BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001748
(1018 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255540419|ref|XP_002511274.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
[Ricinus communis]
gi|223550389|gb|EEF51876.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
[Ricinus communis]
Length = 1025
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/1042 (59%), Positives = 740/1042 (71%), Gaps = 42/1042 (4%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNG 60
M+GRRHSVDIPISRTLIALRRVRSLRDPSTN MSKFSALL+NVNWETNS+NGIS +F G
Sbjct: 2 MDGRRHSVDIPISRTLIALRRVRSLRDPSTNCMSKFSALLENVNWETNSTNGISLQFTGG 61
Query: 61 CK-------GLFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDTDNPNL--- 110
C+ G + +N ++ E+ DD L L SK NL +N
Sbjct: 62 CQQGGSDHNGFARLNNSGLNRIRDEEIDDFHLQHDLVKSK----PNLNLAREENAGASLR 117
Query: 111 IKQVDRLDNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVG 170
K+++ LDN +E+V G +SL ER INH ++ ++ C P S + +
Sbjct: 118 TKKLEGLDNGVLYQEDVSGKKSLSERYYINHRDKGLELTCITPLSNAESNNELI----LR 173
Query: 171 SSSMEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSLFANEEID 230
S +E DQS S K QYKN + G SRV +PC S+S+ ++++ SL ANE+ D
Sbjct: 174 SPKVECFDQSISRKKSQYKNHDKSSGMVGDILSRVGSPCLSVSDALSSYGVSLLANEDTD 233
Query: 231 -VNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEIST 289
+ Q+ GCG+SCCW+RTPR R+SN SD+E PLL ++ ET +G+ KLI NE
Sbjct: 234 FMVQNDRGCGISCCWTRTPRFRESNPYSDVEGRPLLLKDLAETIPHGQRNLKLITNE--- 290
Query: 290 YSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIF 349
+P S SQKFRP F+ELVGQNVVVRSLLSAI++G VTS YLFHGPRGTGKTSASRIF
Sbjct: 291 ---SPRSFSQKFRPKSFEELVGQNVVVRSLLSAIAQGRVTSLYLFHGPRGTGKTSASRIF 347
Query: 350 AAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSS 409
AAALNCLSLE+ KPCGLCREC F SGRSRDVKEVDSVRINR +R+ +L+K+A +PP SS
Sbjct: 348 AAALNCLSLEEYKPCGLCRECVQFFSGRSRDVKEVDSVRINRVERIRALIKNAAIPPVSS 407
Query: 410 RFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKI 469
RFK+FI+DEC LL GETWAT+LNSLEN+ QHVVFVM+TP LDKLPRSA++ SQKYHFPKI
Sbjct: 408 RFKVFIVDECHLLQGETWATILNSLENLPQHVVFVMVTPHLDKLPRSAVTHSQKYHFPKI 467
Query: 470 KDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYE 529
KD DIA RL+ IC+EE I+FDQ ALDFIAAKSNGS+RDAEM+LDQ+SLLGK+IT+SLAYE
Sbjct: 468 KDADIAVRLKNICIEEGIDFDQVALDFIAAKSNGSLRDAEMMLDQMSLLGKRITMSLAYE 527
Query: 530 LIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE 589
L G+VSDDELLDLLDLALSSDTSNTVIRARELMRS+IDPMQL+SQLAN+IMD+LAGKC E
Sbjct: 528 LAGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPMQLVSQLANIIMDMLAGKCQE 587
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS- 648
D SE R+ F +H +EADMQ+LS ALK+LSETEKQLRMSK Q+TWLTVALLQLSS E+
Sbjct: 588 DSSEVRRKFSSRHATEADMQRLSHALKVLSETEKQLRMSKSQSTWLTVALLQLSSLEAPF 647
Query: 649 LDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIW 708
L+ ND +R A D+DGD T S +S K L+ SC K + G D K TLESIW
Sbjct: 648 LNANDPNPSIRNAQDRDGDFCSTSSTGESLKLLLPCSCEDGKLHNGG---DCKATLESIW 704
Query: 709 KTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQS 768
K ATELCQSNSL+ FL KQGKLSSL VN LAVAELEFH DYVS+AEKSWK IAS LQS
Sbjct: 705 KNATELCQSNSLRNFLGKQGKLSSLCVNQDLAVAELEFHRPDYVSKAEKSWKTIASALQS 764
Query: 769 VLGCNVEIRL---LC--APVSAKENKPSFSLFSCSRWV-QQSRSTTERETDSDYSDYFSE 822
+LG NVEIR+ LC A K K FSLFSCSR V ++S+ TE +DSDYS + SE
Sbjct: 765 ILGRNVEIRINLVLCDSALKCKKLRKLPFSLFSCSRRVLRRSQLPTECGSDSDYSGHMSE 824
Query: 823 KPMIRARHTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDISRS 882
KP+ R LTCSSDC SQM H + DVV+ALR++EGNVLS G S HRS+QDD +
Sbjct: 825 KPIKGDRVILTCSSDCRSQMPHYIFPRVDVVKALRNNEGNVLSIGRNSSHRSLQDDTLKI 884
Query: 883 AGCEISSLNR--NDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSEMVCT----SNK 936
SL + S +E E QP+CF RTLRLQK+L +++ S +VC +NK
Sbjct: 885 PAYGNDSLKEEGGSLGYETFSSEETEEQPNCFSRTLRLQKRLPSTNHSRIVCMGNQEANK 944
Query: 937 LALSIPKKTSFDTYISVDDPHVFYGSSNYHHSSVRDEDGPQENSDVLCWRTPTFPLKKAG 996
LALS P K S +T S + S+N ++S R EDG ENS LCWRTPTF KA
Sbjct: 945 LALSFPAKRSIETCNSTTNGSYVLNSNNDTNNS-RSEDGLTENSAALCWRTPTFTQSKAW 1003
Query: 997 QMAHQRKRSNIMDCILPCTNAK 1018
Q+ H R+RS + +LPC +AK
Sbjct: 1004 QLTHHRRRSPLARWVLPCASAK 1025
>gi|224119534|ref|XP_002318098.1| predicted protein [Populus trichocarpa]
gi|222858771|gb|EEE96318.1| predicted protein [Populus trichocarpa]
Length = 965
Score = 1056 bits (2732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/972 (60%), Positives = 716/972 (73%), Gaps = 40/972 (4%)
Query: 2 EGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNGC 61
+GRRHSVDIPI+RTLIALRRVRSLRDPSTNSMSKFSALL+N WETNS+ IS +F +
Sbjct: 3 DGRRHSVDIPITRTLIALRRVRSLRDPSTNSMSKFSALLENATWETNSTKEISIQFADVS 62
Query: 62 K-------GLFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDT-DNPNLIKQ 113
K GL ++L ++ ++E+ D+ + + S+ + ++ G + + D P ++
Sbjct: 63 KEGRLNHTGLSGWKNLGLDEHREEQVDNFDSQYDMGRSELIFRESSGGVKSMDAPLTAEK 122
Query: 114 VDRLDNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVGSSS 173
V+R DNY E E G + L E C +H N+ D+ C+ P S +ED GP GS
Sbjct: 123 VER-DNY---EREASGTKLLSEEYCGSHRNKVLDLVCTTPLSNQLEDRDSTSGPITGSPL 178
Query: 174 MEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSLFANEEID-VN 232
D S K + KN+ + SR +PC S+S+ +++HS SLFANEE D +
Sbjct: 179 GSD--HSVPRQKPRSKNQVKSYSGVGDVLSRAGSPCLSVSDALSSHSTSLFANEETDFMV 236
Query: 233 QSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSE 292
Q+ GCG+SCCW++TPR R SN SD E NPLLS ++ ET RS N E
Sbjct: 237 QNDRGCGISCCWTKTPRLRDSNPYSDAEGNPLLSRDVAETTRGKRSWKHTTN-------E 289
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
TP SLSQKFRP FDELVGQNVVVRSLL AIS+G +TS YLFHGPRGTGKTSASRIFAAA
Sbjct: 290 TPRSLSQKFRPKSFDELVGQNVVVRSLLGAISKGRITSLYLFHGPRGTGKTSASRIFAAA 349
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
LNCLS E KPCG+CREC F SGRSRDVKEVDS+RINR+ + SL+K+A +PP SSRFK
Sbjct: 350 LNCLSRE-YKPCGVCRECVAFFSGRSRDVKEVDSMRINRAKGIRSLIKNASMPPISSRFK 408
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
+FI+DEC LLHGETW TVLNSLEN+SQ+VVFVMITPELD LPRSA+SRSQKYHFPKIKD
Sbjct: 409 VFIVDECHLLHGETWGTVLNSLENLSQNVVFVMITPELDMLPRSAVSRSQKYHFPKIKDA 468
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIG 532
DIA RLR ICVEE ++FDQ ALDFIAAKS+GS+RDAE++LDQLSLLGK+IT+SLA+ELIG
Sbjct: 469 DIAGRLRNICVEEDLDFDQVALDFIAAKSSGSLRDAEIMLDQLSLLGKRITMSLAHELIG 528
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS 592
+VSDDEL DLLDLALSSDTS+TVIRARELMRS+IDPM+L+SQLANLIMD+LAGKC ++ S
Sbjct: 529 VVSDDELFDLLDLALSSDTSSTVIRARELMRSRIDPMRLVSQLANLIMDVLAGKCQDNSS 588
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS-LDL 651
E R+ F KH SE DMQ+LS ALKILSE+EKQLRMSK+Q+TWLTVALLQLSS E+S +D+
Sbjct: 589 EVRRKFSRKHASEGDMQRLSHALKILSESEKQLRMSKNQSTWLTVALLQLSSLEASPMDV 648
Query: 652 NDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTA 711
NDSK +R HD+DGD T S +S KHLV SC K+ +L D K TL+SIWK A
Sbjct: 649 NDSKSSMRNGHDRDGDFSSTPSTGESLKHLVLHSCEDRKSERLQVQGDCKVTLDSIWKRA 708
Query: 712 TELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLG 771
+ELC+SNSL+ FLRKQGKLSSLH + GLAVAELEFHH +Y S+AEKSWK IAS+LQ+VLG
Sbjct: 709 SELCKSNSLRNFLRKQGKLSSLHFDKGLAVAELEFHHPNYASKAEKSWKFIASSLQTVLG 768
Query: 772 CNVEIRL---LCAPVS--AKENKPSFSLFSCSRWVQQSRSTTERE----TDSDYSDYFSE 822
CNVEIR+ +CAPVS AK + SFSLF CSR + + +S E +DSDYSD+ SE
Sbjct: 769 CNVEIRINLVVCAPVSKCAKLRRLSFSLFGCSR-ITRHKSHPPMECGCGSDSDYSDHISE 827
Query: 823 KPMIRARHTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDISRS 882
KPMIR + C SDCGSQ+ H+C H+ +V +ALR+SEGNVLS G S HRS+ +D S++
Sbjct: 828 KPMIREKAISACPSDCGSQIPHSCYHRVEVGKALRNSEGNVLSIGPTSSHRSLPNDTSKT 887
Query: 883 AGCEI--SSLNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSEMV--CT--SNK 936
G S +D+ + S QE E QP+CFP++LRL KK R+S+T+++V CT NK
Sbjct: 888 PGYGFPSSKAGESDHDYTIFSGQEAEDQPNCFPKSLRLPKKSRSSETTKVVRICTHQENK 947
Query: 937 LALSIPKKTSFD 948
LALSIP K S +
Sbjct: 948 LALSIPGKESVE 959
>gi|224133772|ref|XP_002321657.1| predicted protein [Populus trichocarpa]
gi|222868653|gb|EEF05784.1| predicted protein [Populus trichocarpa]
Length = 907
Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/947 (57%), Positives = 666/947 (70%), Gaps = 78/947 (8%)
Query: 2 EGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNGC 61
+GRRHSVDIPI+RTLIALRRVRSLRDPSTNSMSKFSALL+N NWETNS+ IS + NG
Sbjct: 3 DGRRHSVDIPITRTLIALRRVRSLRDPSTNSMSKFSALLENANWETNSTKDISLQSANGS 62
Query: 62 KGLFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDTDNPNLIKQVDRLDNYQ 121
K G ++++ ++NLG +D + + D +++
Sbjct: 63 K-----------------------EGGSNHNRVSGWKNLG-LDGQSKQQVDNFDSGSDFE 98
Query: 122 SKEEEVDGHESLGERRCINHL--NREFDMCCSMPYSQPMEDVGFCKGPNVGSSSMEDIDQ 179
K + + G G + H +E D+ C P S +ED
Sbjct: 99 -KSKLIFGDSLGGVKNMDAHFRNKKELDLVCITPSSNHLED------------------- 138
Query: 180 SASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSLFANEEID-VNQSHHGC 238
S + K +YKN+ + G SRV +PC S S+ ++ SLFAN+E D + Q HGC
Sbjct: 139 SVTRRKSRYKNQVQSYGGVGDILSRVGSPCFSGSDAFSSQGTSLFANKEADFMVQKDHGC 198
Query: 239 GLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWSLS 298
G+SCCW+RTPR R SN SD E NPLLS ++ ET+ G+ K NE TP SLS
Sbjct: 199 GISCCWTRTPRLRDSNPYSDAEGNPLLSRDVAETSPCGKRSWKHATNE------TPRSLS 252
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
QKFRP FDELVGQ VV RSLL AISRG +TS YLFHGPRGTGKTSAS+IFAAALNCLS
Sbjct: 253 QKFRPKSFDELVGQGVVARSLLGAISRGRITSLYLFHGPRGTGKTSASKIFAAALNCLSH 312
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
E+ KPCGLCREC +F SGRS+DVKEVDSVRIN++ R+ SL+K A +PP SSRFK+FI+DE
Sbjct: 313 EENKPCGLCRECYVFFSGRSQDVKEVDSVRINQTRRIRSLIKDASMPPISSRFKVFIVDE 372
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
C LLHGETWA VLNSLEN+S++VVFVMITPELD LP+SA++RSQKYHFPKIK+ DIA RL
Sbjct: 373 CHLLHGETWAIVLNSLENLSENVVFVMITPELDMLPKSAVTRSQKYHFPKIKEADIAGRL 432
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDE 538
R ICVEEA++FDQ ALDFIA KS+GS+RDAE++LDQLSLLGK+IT+++ +ELIG+VSDDE
Sbjct: 433 RNICVEEALDFDQVALDFIATKSSGSLRDAEIMLDQLSLLGKRITMTMVHELIGVVSDDE 492
Query: 539 LLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNF 598
LL LLDLALSSDTS+TVIRARELMRS+IDPMQL+SQLANLIMD+LAGKC +D SE R+ F
Sbjct: 493 LLGLLDLALSSDTSSTVIRARELMRSRIDPMQLVSQLANLIMDVLAGKCKDDSSEVRRKF 552
Query: 599 FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-SSLDLNDSKLC 657
KH+SE DMQ+LS ALKILSE+EKQLRMS++Q+TWLT ALLQLSS E S++D+NDS
Sbjct: 553 SRKHSSEGDMQRLSHALKILSESEKQLRMSRNQSTWLTAALLQLSSLEASAVDVNDSN-- 610
Query: 658 LRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTATELCQS 717
T S +S KHL SC K K + TL++IWK +ELCQS
Sbjct: 611 -------------TPSTGESLKHLALYSCEDSKLQKSQVQGGCQATLDTIWKRTSELCQS 657
Query: 718 NSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIR 777
NSL+ FLRKQGKLSSLH+N GLAVAELEFHH DY S+AEKSWKLIAS LQ++LGCNVEIR
Sbjct: 658 NSLRNFLRKQGKLSSLHINRGLAVAELEFHHSDYASKAEKSWKLIASLLQTILGCNVEIR 717
Query: 778 L---LCAPVS---AKENKPSFSLFSCSRWVQ-QSRSTTERETDSDYSDYFSEKPMIRARH 830
+ LC P + AK K SF F CSR ++ +S+ E DSDYSD+ SE+PMIR R
Sbjct: 718 INLVLCTPPASKCAKLWKQSFCFFGCSRRMRHKSQPPIECGIDSDYSDHISERPMIRERA 777
Query: 831 TLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDISRSAGCEISS- 889
C SD SQ+ HNC H+ +VVRALR+SEGNVLS GT S RS+ DD S++ G SS
Sbjct: 778 ISACPSDSRSQIPHNCYHRAEVVRALRNSEGNVLSIGTTSSLRSLHDDTSKTPGYGFSSS 837
Query: 890 -LNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSEMVCTSN 935
ND V S QE E QP+CFP++LRLQK +R+S+ +++VC N
Sbjct: 838 KAGGNDLDYTVFSSQEAEDQPNCFPKSLRLQKMIRSSENTQVVCIGN 884
>gi|297733651|emb|CBI14898.3| unnamed protein product [Vitis vinifera]
Length = 875
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/811 (64%), Positives = 606/811 (74%), Gaps = 46/811 (5%)
Query: 222 SLFANEEID-VNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGH 280
SL ANEE + ++ + GCG+ CCWSRTPR R+SNL SD +
Sbjct: 97 SLLANEESNAIDHNDRGCGIRCCWSRTPRFRESNLLSD------------------KWSW 138
Query: 281 KLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGT 340
K NNEI+ YSE+P SLSQKFRP F+ELVGQNVV RSLL AISRG +TSFYLFHGPRGT
Sbjct: 139 KCFNNEITPYSESPRSLSQKFRPKAFNELVGQNVVARSLLGAISRGRITSFYLFHGPRGT 198
Query: 341 GKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK 400
GKTSASRIFAAALNCLSLE+ +PCGLCREC LF SGRSRD KE+D+VRIN++ R+ SL+K
Sbjct: 199 GKTSASRIFAAALNCLSLEEHRPCGLCRECVLFFSGRSRDSKEIDTVRINQTGRMRSLIK 258
Query: 401 SAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSR 460
A P SSRFK+FIIDEC LL GETWATVLNSL+++ QHVVF+MITP LDKLPRSA+SR
Sbjct: 259 HAIGRPVSSRFKVFIIDECHLLRGETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSR 318
Query: 461 SQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
SQ+YHFPKIKD DIAS+L RICVEE + FDQ ALDFIAAKSNGS+RDAEM+LDQLSLLGK
Sbjct: 319 SQRYHFPKIKDADIASKLGRICVEECLEFDQVALDFIAAKSNGSLRDAEMMLDQLSLLGK 378
Query: 521 KITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIM 580
+IT+S+ YELIGIVSDDELLDLLDLALSSDTSNTV RARELMRS+IDPMQLISQLANLIM
Sbjct: 379 RITMSMTYELIGIVSDDELLDLLDLALSSDTSNTVRRARELMRSRIDPMQLISQLANLIM 438
Query: 581 DILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL 640
DILAGKC E SE R+NFF HTSE D+QKLS ALKILSETEKQLR SK+QTTWLTVALL
Sbjct: 439 DILAGKCQEGTSEVRRNFFEGHTSEVDLQKLSHALKILSETEKQLRASKNQTTWLTVALL 498
Query: 641 QLSSSESS-LDLNDSKLCLRYAHDKDGDSHCTISPR-DSFKHLVRGSCVGDKANKLGALE 698
QLSS ESS LD NDS+ LR H PR ++ K LV +C +K + E
Sbjct: 499 QLSSVESSFLDANDSRAFLRTEH-----------PRGENVKRLVTCACDNNKPHICEVQE 547
Query: 699 DYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKS 758
D KG LE +WK ATE+CQS+SLK FLRKQGKLSS+ V+ G+AVAELEF H DYVS+AEKS
Sbjct: 548 DCKGQLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELEFQHPDYVSKAEKS 607
Query: 759 WKLIASTLQSVLGCNVEIRLLCAPVS-----AKENKPSFSLFSCSRWVQ-QSRSTTERET 812
WKLIAS+LQS+LGCNVEIR+ AP + AK KPSFS FSCSR ++ +S ST+E +
Sbjct: 608 WKLIASSLQSILGCNVEIRINLAPCTSVKGYAKVKKPSFSFFSCSRRMRLKSHSTSEHGS 667
Query: 813 D-SDYSDYFSEKPMIRARHTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVSF 871
D SD SD+ SEK MIR + TCSSDCGSQ+SH C +T+ R LR+ EGNVL GT++
Sbjct: 668 DQSDCSDFTSEKAMIRDKTIGTCSSDCGSQVSHVCYLRTEAARTLRNREGNVLGIGTITP 727
Query: 872 HRSIQDDISRSAGCEISSLNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSEMV 931
HR QD+I + G E+ S C QEPE QP+C T L KKLR+S+ S+M
Sbjct: 728 HRPFQDEIPKGTGFEVGSSKEEQSSCGC---QEPENQPNCLFNTFGLHKKLRSSEASQMT 784
Query: 932 C----TSNKLALSIPKKTSFDTYISVDDPHVFYGSSNYHHSSVRDEDGPQENSDVLCWRT 987
C NKLALS+PK TSF+ Y +D + F SSN +S RDEDG +E+S V CW
Sbjct: 785 CLRYQAQNKLALSVPKNTSFEPYFWANDRYAFSSSSNNFNSCPRDEDGLREDSKVHCWGA 844
Query: 988 PTFPLKKAGQMAHQRKRSNIMDCILPCTNAK 1018
PTFPLKKA Q H+R+ SN++ +LPC K
Sbjct: 845 PTFPLKKAWQSRHRREGSNLVGWVLPCGATK 875
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 63/75 (84%), Gaps = 4/75 (5%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNG 60
M+GRRHSVDIPIS+TL+ALRRVRSLRDPSTNSMSKFSAL+D++NWETNSSNGIS RF NG
Sbjct: 2 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKFSALVDSLNWETNSSNGISLRFVNG 61
Query: 61 CKGLFESESLSINGL 75
F+ NGL
Sbjct: 62 ----FQEGGPDNNGL 72
>gi|356513662|ref|XP_003525530.1| PREDICTED: uncharacterized protein LOC100786687 [Glycine max]
Length = 976
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/991 (53%), Positives = 673/991 (67%), Gaps = 51/991 (5%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISS--RFD 58
M+GRRHSVDIPIS+TL+AL+RVRSLRDPSTN +S+ S L+D+ +WE SSNG+S RF
Sbjct: 1 MDGRRHSVDIPISKTLVALKRVRSLRDPSTNGVSRLSPLVDDGDWEDGSSNGVSLSLRFL 60
Query: 59 NGC-------KGLFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDTDNPNLI 111
NG GL S SL G K++ + EL + NSK M++ + +
Sbjct: 61 NGSHVCDSNGNGLLRSSSLDFKGQKEQDTAEFELE--MWNSK-MNYCGISCQEG------ 111
Query: 112 KQVDRLDNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVGS 171
Q D L K++ + G +S E C NH R D+ MP S ++D G +
Sbjct: 112 LQDDGLVYSNPKQQGISGDKSPNESCCSNHEGRGLDLVSIMPSSNHLKD-----GESCYL 166
Query: 172 SSMEDIDQSASIWKLQYKNEGRLCGAANGGASRV-STPCPSISEIMANHSRSLFANEEID 230
S ++ S S K KN+ + AS V S C S+ + + S S +E+D
Sbjct: 167 SIATRVEHSKSARKSLCKNQVKPSEVIGDIASHVGSQQCLSVFDACSARSASEHIAQEVD 226
Query: 231 VNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTY 290
V SHHGCGL C S++PR R+SN S++E PL+ + ET G + I EIS
Sbjct: 227 VLDSHHGCGLRSCLSKSPRFRESNRYSEIESLPLILQHVNETDLNGHRSMRHIGVEISPT 286
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
SETP SLS KFRP F +LVGQNV+ +SLL AIS G ++SFY+FHGPRGTGKTSASRIFA
Sbjct: 287 SETPRSLSMKFRPKSFSDLVGQNVIGKSLLGAISTGRISSFYIFHGPRGTGKTSASRIFA 346
Query: 351 AALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSR 410
AA+NCLS +QKPCGLCREC LF GRS++VKEVDS+RINR+D+V SL+KSA +PP SS
Sbjct: 347 AAMNCLSPLEQKPCGLCRECVLFFLGRSKNVKEVDSLRINRADKVKSLVKSACIPPASSS 406
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
FK+FI+DECQ+LHGETWA +LN LEN+S VVFVMITP+LDKLPRSA+SR+Q+YHF KIK
Sbjct: 407 FKVFIVDECQVLHGETWACLLNCLENVSPRVVFVMITPDLDKLPRSAVSRAQRYHFAKIK 466
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530
D DIA RL++ICVEE + +Q ALDFIAA+S GS+RDAE +LDQLSLLGKKIT+SL +EL
Sbjct: 467 DADIARRLKKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITISLVHEL 526
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED 590
G++SDDELLDLLDLALSSDTSNTVIRAR+L+R++IDP+QLISQLANLIMDILAGKC
Sbjct: 527 TGVISDDELLDLLDLALSSDTSNTVIRARKLVRTRIDPLQLISQLANLIMDILAGKCELG 586
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-SSL 649
SE R F ++TSEADMQKLS AL+ILSETEKQLR+SK+QTTW T ALLQLSS E SS+
Sbjct: 587 ASETRTRFCNRYTSEADMQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSVEYSSV 646
Query: 650 DLNDSKLCLRYAHDKDGDSHCTISPR-DSFKHLVRGSCVGDKANK--LGALEDYKGTLES 706
D ND+KLC R + DGD C+ P+ DS +HL DK LG ED+KGTL+S
Sbjct: 647 DTNDAKLCARAVSNGDGDI-CSTPPKGDSLEHLATTGQCDDKPYTLGLGVQEDHKGTLDS 705
Query: 707 IWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTL 766
IW ATE+CQS+ LKTFLRKQGKLSS+ ++ G AVAELEFHHRDYVSRAEKSWKLIAS+L
Sbjct: 706 IWYKATEMCQSSRLKTFLRKQGKLSSVCISQGRAVAELEFHHRDYVSRAEKSWKLIASSL 765
Query: 767 QSVLGCNVEIRLLCAP------VSAKENKPSFSLFSCSRWVQ-QSRSTTERETDSDYSDY 819
Q +LGCN+E+R+ P + AK + SF+ F CSR ++ +S + E+ ++SDY+DY
Sbjct: 766 QFILGCNLELRINYVPSCTSDSIYAKLKRTSFNFFGCSRRIRWKSLPSNEQGSESDYADY 825
Query: 820 FSEKPMIRARHTLTCSSDCGSQM----SHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSI 875
S+KPM++ + T TCSSDC + S+N V+ LRSSEGN+LS+G + +R
Sbjct: 826 TSQKPMMKDQ-TQTCSSDCEPPVPPFESYN---GMQVMTTLRSSEGNLLSSGKMLLNRQD 881
Query: 876 QDDISRSAGCEISSLNRNDYYCQVLSPQ--EPETQPSCFPRTLRLQKKLRASDTSEMVCT 933
Q + R + + SL + L+P + + Q CFPRT L KK +S S+
Sbjct: 882 Q-ETPRISCSRVDSLKEEGCNYEHLAPSTLDLDNQTDCFPRTRWLHKKFSSSYASQQ--- 937
Query: 934 SNKLALSIPKKTSFDTYISVDDPHVFYGSSN 964
LSIPK +TY +P +F SSN
Sbjct: 938 -KNFVLSIPKFKCSETYRYDLEPCIFSHSSN 967
>gi|356563163|ref|XP_003549834.1| PREDICTED: uncharacterized protein LOC100808544 [Glycine max]
Length = 976
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/996 (53%), Positives = 672/996 (67%), Gaps = 62/996 (6%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISS--RFD 58
M+GRRHSVDIPIS+TL+ALRRVRSLRDPSTN +S+ S L+D+ +WE SSNG+S RF
Sbjct: 1 MDGRRHSVDIPISKTLMALRRVRSLRDPSTNGVSRLSPLIDDGDWEDGSSNGVSLSLRFL 60
Query: 59 NGC-------KGLFESESLSINGLKKEKDDDLEL--------HCGLDNSKFMSFQNLGWI 103
NG GL S SL G +++ + EL HCG+ +
Sbjct: 61 NGSHACDSNGNGLLRSSSLDFKGQREQDTAEFELDMWNSKMNHCGISCQEG--------- 111
Query: 104 DTDNPNLIKQVDRLDNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGF 163
+Q D L K++ + G +S E C NH R D+ MP S ++D
Sbjct: 112 --------QQDDGLVYSNPKQQCISGDKSSNESCCSNHEGRGLDLVSIMPSSNHLKD--- 160
Query: 164 CKGPNVGSSSMEDIDQSASIWKLQYKNEGRLCGAANGGASRV-STPCPSISEIMANHSRS 222
G + S+ ++ S S K KN+ + AS V S C S+ + + S S
Sbjct: 161 --GESCYLSTATRVEHSKSARKSLRKNQVKPSEVIGDIASHVGSQQCLSVFDAPSARSAS 218
Query: 223 LFANEEIDVNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKL 282
++ DV ++HGCGL CWS++PR R+SN S++E PL+ + ET G +
Sbjct: 219 EHITQDEDVLDNYHGCGLRSCWSKSPRFRESNHYSEIEGLPLILQHVSETDLNGHRNMRH 278
Query: 283 INNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGK 342
I EIS ETP SLS KFRP F +LVG NV+ +SLL AIS G ++SFYLFHGPRGTGK
Sbjct: 279 IGGEISPTLETPRSLSMKFRPKSFSDLVGHNVIGKSLLGAISTGRISSFYLFHGPRGTGK 338
Query: 343 TSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSA 402
TSASRIFAAALNCLS +QKPCGLCREC LF GRS+ VKE+DS+RINR+D+V SL+K+A
Sbjct: 339 TSASRIFAAALNCLSPLEQKPCGLCRECVLFFLGRSKHVKEIDSLRINRADKVKSLVKNA 398
Query: 403 FLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462
+P SS FK+FI+DECQLLH ETWA +LNSLEN+S HVVFVMITP+LDKLP SALSR+Q
Sbjct: 399 CIPRVSSCFKVFIVDECQLLHAETWACLLNSLENVSPHVVFVMITPDLDKLPPSALSRAQ 458
Query: 463 KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKI 522
+YHF KIKD DIA RL +ICVEE + +Q ALDFIAA+S GS+RDAE +LDQLSLLGKKI
Sbjct: 459 RYHFAKIKDVDIAIRLEKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKKI 518
Query: 523 TLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI 582
T+SL +EL G++SDDELLDLLDLALS+DTSNTVIRAREL+R++IDP+QLISQLANLIMDI
Sbjct: 519 TISLVHELTGVISDDELLDLLDLALSTDTSNTVIRARELVRTRIDPLQLISQLANLIMDI 578
Query: 583 LAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
LAGK SE R+ F ++TSEAD+QKLSRAL+ILSETEKQLR+SK+QTTW T ALLQL
Sbjct: 579 LAGKFELGDSEIRR-FCNRYTSEADLQKLSRALRILSETEKQLRISKNQTTWFTAALLQL 637
Query: 643 SSSE-SSLDLNDSKLCLRYAHDKDGDSHCTISPR-DSFKHLVRGSCVGDKANK--LGALE 698
SS E SS D ND+KLC R A ++DGD C+ SP+ DS +HL DK++ LG E
Sbjct: 638 SSVEYSSADTNDTKLCARSASNRDGDI-CSTSPKGDSLEHLATTGQCDDKSDTLGLGVRE 696
Query: 699 DYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKS 758
D++ TL+SIW ATE+CQSN LKTFLRKQGKLSS+ ++ G AVAELEFHHRDYVSRAEKS
Sbjct: 697 DHRRTLDSIWYKATEMCQSNRLKTFLRKQGKLSSVCISQGRAVAELEFHHRDYVSRAEKS 756
Query: 759 WKLIASTLQSVLGCNVEIRLLCAP------VSAKENKPSFSLFSCSRWVQ-QSRSTTERE 811
W+LIAS+LQ +LGCN+E+R+ C P + AK + SFS F CSR ++ +S S+ E+
Sbjct: 757 WRLIASSLQFILGCNLELRINCVPSCTSDSIYAKLKRTSFSFFGCSRRIRWKSISSNEQG 816
Query: 812 TDSDYSDYFSEKPMIRARHTLTCSSDCGSQM-SHNCCHKTDVVRALRSSEGNVLSTGTVS 870
++SDY+DY S++PM++ + TLTCSS+ ++ S + VV LRSSEGN+LS+G +
Sbjct: 817 SESDYADYTSQRPMMKTQ-TLTCSSNREPRVPSFESYNGMQVVTTLRSSEGNLLSSGKMF 875
Query: 871 FHRSIQDDISRSAGCEISSLNRNDYYCQVLSPQ--EPETQPSCFPRTLRLQKKLRASDTS 928
+R Q + R + + SL ++L+P + + Q CFPRT L KK +S S
Sbjct: 876 LNRPDQ-ETPRISCSGVDSLKEEGCNYELLAPSTLDLDNQSDCFPRTRWLHKKFSSSYAS 934
Query: 929 EMVCTSNKLALSIPKKTSFDTYISVDDPHVFYGSSN 964
+ LSIPK + Y +P VF SSN
Sbjct: 935 Q----EKNFVLSIPKFKCSEAYGYDLEPRVFSHSSN 966
>gi|356518927|ref|XP_003528127.1| PREDICTED: uncharacterized protein LOC100812040 [Glycine max]
Length = 979
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/988 (52%), Positives = 668/988 (67%), Gaps = 48/988 (4%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRF--- 57
M+GRRHSVDIPIS+TL+ALRRVRSLRDP+TNSMSK S+L+DNV+WE S N IS RF
Sbjct: 2 MDGRRHSVDIPISKTLVALRRVRSLRDPTTNSMSKLSSLVDNVHWENGSGNEISLRFSDA 61
Query: 58 ----DNGCKGLFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDTDNPNLIKQ 113
D+ F S +L G +K D D L+ GL NS+ + D +Q
Sbjct: 62 AGPCDSDDNAAFRSRNLGFKGHRKPDDADFLLNHGLLNSRLKPSGMMSCKDD------QQ 115
Query: 114 VDRLDNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVGSSS 173
D + + + + + G +S E N + D+ C + S +D C SS
Sbjct: 116 DDEMVHSKPNLQCISGDKSPSESCGSNLGGKGLDLSCIVLPSNNFKDGDSCYIETARSSQ 175
Query: 174 MEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSLFANEEIDVNQ 233
+ D S S K KN+ + A AS +PCPS + + +S + N+++DV
Sbjct: 176 LGRTDYSKSAKKSLRKNQVKPSEVAISIASNEGSPCPSGYDAFSPYSAKVGINQDVDVLD 235
Query: 234 SHH-GCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSE 292
++ GCG+SCCWS++PR R+SNL ++ED PL+S + ET + IS E
Sbjct: 236 NNDDGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDETDLDAHRSMRHNGGGISPTLE 295
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
TP SLS KFRP F +LVGQNVVVRSLL+AISRG +TSFYLF+GPRGTGKTS SR+FAAA
Sbjct: 296 TPRSLSMKFRPKSFSDLVGQNVVVRSLLAAISRGRITSFYLFYGPRGTGKTSTSRMFAAA 355
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
LNCLS+ +++PCGLCREC L SGR++DVKEVDSV INR+++V SL+K+A +PP SSRFK
Sbjct: 356 LNCLSVVEKRPCGLCRECVLLFSGRNKDVKEVDSVTINRAEQVKSLIKNASIPPVSSRFK 415
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
+FIIDECQLL+GETWA++ NSLEN+SQHVVFVMITP+LDKLPRSA+SR+Q+YHFPK+KD
Sbjct: 416 VFIIDECQLLNGETWASISNSLENLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKVKDA 475
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIG 532
DI RL +IC EE ++F+Q ALDFI AKS GS+RDAEM+LDQ+SLLGKKI +SLAYEL G
Sbjct: 476 DIVCRLEKICAEEGLDFEQDALDFIGAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTG 535
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS 592
IVSDDELLDLLDLALSSDTSNTVIRARELMRS+IDP+ L+SQLANLIMDILAGKC S
Sbjct: 536 IVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLHLVSQLANLIMDILAGKCENGGS 595
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-SSLDL 651
+ R F +H SEAD+QKL+ ALKILSETEKQLR SK+QTTW VALLQLSS + S+D
Sbjct: 596 DVRSRFSRRHNSEADLQKLNNALKILSETEKQLRNSKNQTTWFIVALLQLSSVDCQSVDA 655
Query: 652 NDSKLC--LRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWK 709
ND+ L K+ D T+S +H+ G C +K+ +L ED+KGTL+SIW
Sbjct: 656 NDTNFLYSLNNMDIKNVDICNTLSTGQRLEHVTTGLC-DNKSYRLEP-EDHKGTLDSIWY 713
Query: 710 TATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSV 769
ATE+C S+ LKTF R +GKLSSLHV+ LA+AELEFHHR +VS+AEKSWK IAS+LQ +
Sbjct: 714 KATEMCHSSQLKTFFRNKGKLSSLHVDGSLAIAELEFHHRHHVSKAEKSWKAIASSLQFI 773
Query: 770 LGCNVEIRLLCAPVSAKEN----KPSFSLFSCSRWVQQSR--STTERETDSDYSDYFSEK 823
LGCN+E+R+ AP ++ + SFS+F CS ++Q + S+ E+ ++SDY+DY SE
Sbjct: 774 LGCNIELRITYAPCASDSKYAKLRSSFSIFGCSHRIRQQKSLSSNEQVSESDYADYTSEN 833
Query: 824 PMIRARHTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDISRSA 883
PM++ R + +SDCG D V ALRSSEGN+LS+G +RS Q + R++
Sbjct: 834 PMMKDRIS---TSDCG----------MDAVTALRSSEGNLLSSGERFLNRSFQ-ETKRTS 879
Query: 884 GCEISSLNRNDYYCQVLSPQEPET----QPSCFPRTLRLQKKLRASDTSEM----VCTSN 935
E+ Y C L P ++ Q +CFP+TL LQKK R+S +S++ +
Sbjct: 880 SAEVDFSKEEGYNCAHLDPSMLDSDNNHQSNCFPKTLWLQKKFRSSHSSKLTFQGIQPQK 939
Query: 936 KLALSIPKKTSFD-TYISVDDPHVFYGS 962
+S+PK + TY ++P +F S
Sbjct: 940 DFVISVPKMCACSGTYTYANEPSIFSSS 967
>gi|356507313|ref|XP_003522412.1| PREDICTED: uncharacterized protein LOC100819111 [Glycine max]
Length = 952
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/975 (53%), Positives = 659/975 (67%), Gaps = 61/975 (6%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNG 60
M+GRRHSVDIPIS+TL+ALRRVRSLRDP+TNSMSK S+L+DNV+WE S+N IS RF +
Sbjct: 2 MDGRRHSVDIPISKTLVALRRVRSLRDPTTNSMSKLSSLVDNVHWENGSANEISLRFSDA 61
Query: 61 CK-------GLFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDTDNPNLIKQ 113
+ F S +L G ++ D D L+ GL NS+ + G D+ +
Sbjct: 62 TRLCDSDDNAAFRSRNLGFKGHREPDDADFVLNHGLLNSRL---KPSGMSCKDDQRDDEL 118
Query: 114 VDRLDNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVGSSS 173
V N Q + ES G NH + D+ C + S +D C SS
Sbjct: 119 VYSKPNLQCTSGDKSPSESCGS----NHGGKGLDLACIVLPSNNFKDGDSCYVGTARSSQ 174
Query: 174 MEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSLFANEEIDV-N 232
+ ID S S K KN+ A AS +PCPS + + + S+ N+++DV +
Sbjct: 175 LGRIDCSKSAKKSLRKNQVNPSELAGSIASNEGSPCPSGYDAFSPYCASVGINQDVDVLD 234
Query: 233 QSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGET-AHYGRSGHKLINNEISTYS 291
+ +GCG+SCCWS++PR R+SNL ++ED PL++ + ET H RS IS
Sbjct: 235 NNDNGCGISCCWSKSPRFRESNLYGEIEDRPLITHRVDETDLHAHRSMRHNGGGGISPTL 294
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
ETP SLS KFRP F +LVGQNVVVRSLL AISRG +TSFYLF+GPRGTGKTSASR+FAA
Sbjct: 295 ETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRMFAA 354
Query: 352 ALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
ALNCLS+ +Q+PCGLCREC L SGRS+DVKEVDSVRINR+D+V SL+K+A +PP SSRF
Sbjct: 355 ALNCLSVVEQRPCGLCRECVLLFSGRSKDVKEVDSVRINRADQVKSLIKNASIPPVSSRF 414
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+F IDECQLL+GETWA++ NSLEN+SQ+VVFVMITP+LDKLP SA+SR+Q+YHFPK+KD
Sbjct: 415 KVFFIDECQLLNGETWASISNSLENLSQYVVFVMITPDLDKLPPSAVSRAQRYHFPKVKD 474
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
DI RL +IC EE + F+Q ALDFIAAKS GS+RDAEM+LDQ+SLLGKKI +SLAYEL
Sbjct: 475 ADIVCRLEKICAEEGLEFEQDALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELT 534
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
GIVSDDELLDLLDLALSSDTSNTVIRARELMRS+IDP+QL+SQLANLIMDILAGKC
Sbjct: 535 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGG 594
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-SSLD 650
SE R F +++SEAD+QKL+ ALK+LS+TEK LR SK+QTTW TVALLQLSS + S+D
Sbjct: 595 SEVRSRFSRRYSSEADLQKLNNALKVLSDTEKHLRFSKNQTTWFTVALLQLSSVDCQSVD 654
Query: 651 LNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVR-------GSCVGD-KANKLGALEDYKG 702
ND+KL LR A C D F ++ C+ D K+ +L ED+KG
Sbjct: 655 ANDTKLSLRGA--------CNGGELDFFPLVITLFSIPFLHCCLCDNKSYRLEVPEDHKG 706
Query: 703 TLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLI 762
TL+SIW ATE+C S LK FLRK+GKLSSLHV+ LA+AELEFHHR +VS+AEKSWK I
Sbjct: 707 TLDSIWYKATEMCHSGQLKNFLRKKGKLSSLHVDRSLAIAELEFHHRHHVSKAEKSWKAI 766
Query: 763 ASTLQSVLGCNVEIRLLCAPVSAKEN----KPSFSLFSCSRWVQQSR--STTERETDSDY 816
AS++Q +LGCN+E+R+ AP ++ + SFS+F CSR ++Q + S+ ER ++SDY
Sbjct: 767 ASSMQFILGCNIELRITYAPCASDPKYAKLRSSFSIFGCSRRIRQQKSLSSNERGSESDY 826
Query: 817 SDYFSEKPMIRARHTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQ 876
+D SE P + T +SDCG D ALRSSEGN+LS+G +RS Q
Sbjct: 827 ADNNSENP----KKDRTSTSDCG----------MDAATALRSSEGNLLSSGERFLNRSFQ 872
Query: 877 DDISRSAGCEISSLNRNDYYCQVLSPQEPET---QPSCFPRTLRLQKKLRASDTSEM--- 930
+ R++ ++ Y C L P ++ +CFP+TL LQKK R+S +S++
Sbjct: 873 -ETKRTSFAKVDFSKEEGYNCAHLDPSMLDSDNNHSNCFPKTLWLQKKFRSSYSSKLTFQ 931
Query: 931 -VCTSNKLALSIPKK 944
+ +S+PKK
Sbjct: 932 GILPQKDFVVSVPKK 946
>gi|357477253|ref|XP_003608912.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
gi|355509967|gb|AES91109.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
Length = 936
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/958 (53%), Positives = 652/958 (68%), Gaps = 65/958 (6%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRF--- 57
M+GRRHSVD+PIS+TL+ALRRVRSLRDPSTN +SK S L+DN +WE NGIS RF
Sbjct: 1 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNEHWE----NGISLRFVNA 56
Query: 58 -------DNGCKGLFESESLSINGLKKEKDDD----LELHCGLDNSKFMSFQNLGWIDTD 106
DNGC S+ L G ++E D D E+ C + N + D
Sbjct: 57 TYVCESDDNGC---LRSKDLDFKG-RREHDIDSTTNFEMGCHMMN----------YCDKQ 102
Query: 107 NPNLIKQVDRLDNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKG 166
+Q D L K++ G++S E C NH D+ +P S ++D C
Sbjct: 103 -----QQDDELVYSNPKQQGDFGNKSPKESCCSNHEAVGLDLASIIPSSNHLKDKESCYL 157
Query: 167 PNVGSSSMEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSLFAN 226
+ SS + ID S KL KN+ + AS V +PC S S
Sbjct: 158 SSQLSSRLGRIDYKKSTRKLLQKNQAKPFELMQDNASSVDSPCLSASTQTP--------- 208
Query: 227 EEIDVNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYG-RSGHKLINN 285
+++DV ++GCG+SCCWS++PR R +N S++ED PL+ + ET +G +S +I +
Sbjct: 209 QDVDVLVDYNGCGISCCWSKSPRFRDANYYSEMEDLPLMLQHVNETDLHGQKSMRHIIGS 268
Query: 286 EISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSA 345
EIS ETP SLS KFRP F++LVGQN+V +SL AISRG + SFYLFHGPRGTGKTSA
Sbjct: 269 EISPTLETPRSLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSA 328
Query: 346 SRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSA-FL 404
SRIFAAALNC+SLE+++PCGLC EC LF SGRS+DVKEVDS+RINR D+ SL+K+A
Sbjct: 329 SRIFAAALNCISLEERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTT 388
Query: 405 PPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKY 464
PFSSR+K+FIIDECQLL+ ETWAT+LNSL SQHVVFVMITP+L+KLPRSA+SR+Q+Y
Sbjct: 389 APFSSRYKVFIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRY 448
Query: 465 HFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITL 524
HF KIKD DIASRL+RICVEE + +Q ALDFIAAKS GS+RDAEM+LDQLSLLGKKIT+
Sbjct: 449 HFTKIKDADIASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITI 508
Query: 525 SLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
SL YEL G++SDDELLDLLDL+LSSDTSNTVIRAREL+RS+IDP+QLISQLANLIMDILA
Sbjct: 509 SLVYELTGVISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILA 568
Query: 585 GKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
GKC SE R+ F +H +E+ MQKLS AL+ILSETEKQLR+SK+QTTW T ALLQLS
Sbjct: 569 GKCELTGSEIRRRFSDRHILAESSMQKLSHALRILSETEKQLRISKNQTTWFTAALLQLS 628
Query: 644 SSE-SSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKG 702
S E SS+D NDSKLC+R A ++DGD T S +S KHL G C +K+ K+ +D K
Sbjct: 629 SLEYSSVDANDSKLCIRAASNRDGDLCSTSSTAESLKHLATGKC-AEKSYKIEVQDDDKA 687
Query: 703 TLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLI 762
TL+ IW ATE+C+S LK FLRKQGKLSS+ +N GLA ELEFHHR YV+RAEKSWK I
Sbjct: 688 TLDCIWYKATEICESKRLKAFLRKQGKLSSVCINQGLAAVELEFHHRVYVARAEKSWKQI 747
Query: 763 ASTLQSVLGCNVEIRLLCAPVS-----AKENKPSFSLFSCSRWV-QQSRSTTERETDSDY 816
AS+LQ +LGCN+E+R+ P + A+ + SF+ F+CSR + ++S S+ E+ +SDY
Sbjct: 748 ASSLQFILGCNIELRINHVPCTTDSKYARLKRSSFNFFNCSRRILRKSLSSDEQGCESDY 807
Query: 817 SDYFSEKPMIRARHTLTCSSDCGSQMSH-NCCHKTDVVRALRSSEGNVLSTGTVSFHRSI 875
+D S+KPM+ R TL+ SSDCGS++ H ++V LRS EGN+LS+G + +R
Sbjct: 808 ADCTSQKPMMMDR-TLSRSSDCGSRVPPLESYHGMELVTTLRSCEGNLLSSGKIILNRID 866
Query: 876 QD----DISRSAGCEISSLNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSE 929
Q+ SR + N D + T +CFPRTL L KKL +S S+
Sbjct: 867 QETPRISFSRDDSVKEEECNYEDLASSTADLE--NTHSNCFPRTLWLHKKLSSSYASK 922
>gi|358348981|ref|XP_003638519.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
gi|355504454|gb|AES85657.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
Length = 903
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/943 (49%), Positives = 628/943 (66%), Gaps = 60/943 (6%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNG---ISSRF 57
M+GRRHSVD+PIS+ L+ALRRVRSL+DPSTNS++ S L+DN++WE ++ NG F
Sbjct: 3 MDGRRHSVDLPISKALVALRRVRSLKDPSTNSVTNHSPLIDNLHWENSTGNGSLMFPDAF 62
Query: 58 DNGCKGLFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDTDNPNLIKQVDRL 117
D+ L S L G ++ LEL GL NS+ PN
Sbjct: 63 DSD-DNLASSRHLGFKGGRELDATSLELSHGLLNSR--------------PN-------- 99
Query: 118 DNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVGSSSMEDI 177
V G++S E NH + D+ +D G SS + +
Sbjct: 100 ------RRSVYGNKSPSESCGSNHGGKGLDI-------NDFKDGGLYYREIGRSSKLGRM 146
Query: 178 DQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSLFANEEIDV-NQSHH 236
D + KL KN+ + AS +STPCP + ++ N++ V + +
Sbjct: 147 DHAKPARKLLRKNQVKPSDVVGDIASNLSTPCPCVRNALSPQGSLALVNKDFGVLDNREN 206
Query: 237 GCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWS 296
GCG +CC S +PR R+SNL + ED L+ + +T +G + E S ETP
Sbjct: 207 GCGKNCCLSNSPRFRESNLCFEKEDRSLILNCVDDTDLHGHRNVRDNGGESSPNLETPRM 266
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
LS KFRP FD+LVGQ++VVRSLL+A+S +TSFYLFHGPRGTGKTSAS+IFA ALNC+
Sbjct: 267 LSMKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFHGPRGTGKTSASKIFACALNCI 326
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
S + Q+PCGLCREC LF SGRS+DVKEVDSVRIN +D+V SL+K+A PP SSRFK+FII
Sbjct: 327 SNKKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVKNACTPPVSSRFKVFII 386
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DECQLL+ ETWA + N+ +NISQH VFVMIT +LDKLP+SA+SR+QKY+FPK++D +IA
Sbjct: 387 DECQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQSAVSRAQKYYFPKVQDANIAC 446
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
+L +IC EE ++F+QAALD IAA+S GS+RDAE++LDQLSLLGKKI +SL YEL GIVSD
Sbjct: 447 KLEKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGKKIKISLVYELTGIVSD 506
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
DELLDLLDLALS DTSNTVIRARELMRS+IDP+QL+SQL NLIMDILAG E R
Sbjct: 507 DELLDLLDLALSPDTSNTVIRARELMRSRIDPLQLVSQLVNLIMDILAGNHENGGDEVRS 566
Query: 597 NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-SSLDLNDSK 655
+ ++TS+AD++KLS AL+I +E EKQLR+SK+Q+TW TVALLQLSS++ S D + +K
Sbjct: 567 KYSSRYTSKADLRKLSHALRIFTEAEKQLRISKNQSTWFTVALLQLSSADYPSTDADGNK 626
Query: 656 LCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTATELC 715
L L A + D + +H GSC +K+ +L A ED++GTL++IW AT +C
Sbjct: 627 LSLGGACNGD-------ELGKNMEHFDAGSC-ENKSFRLVAQEDHEGTLDAIWYKATGIC 678
Query: 716 QSNSLKTFLRKQGKLSSLHVNH---GLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGC 772
QS+ LKTFLR++GKLSSL V+ LA+ ELEF R +VS+AEKSWKLIAS+LQ +LGC
Sbjct: 679 QSSKLKTFLRRKGKLSSLLVDQSTSSLAIVELEFGRRHHVSKAEKSWKLIASSLQCLLGC 738
Query: 773 NVEIRLLCAPVSAKEN--KPSFSLFSCSRWVQQSRSTTERETDSDYSDYFSEKPMIRARH 830
N+E+R++ P+S + + SF++FSCSR +QQ ++ E+E++ DY+DY SE P+++ +
Sbjct: 739 NIELRIIDVPLSTSNSPKRSSFNIFSCSRRIQQ--TSNEQESEIDYADYTSENPIMKNK- 795
Query: 831 TLTCSSD-CGSQM-SHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDISRS-AGCEI 887
TL+CSS CGSQ+ N ++TD V +LRS EGN+LS+ + + S+ + + S +G +
Sbjct: 796 TLSCSSSYCGSQIPPQNSYNETDPVSSLRSCEGNLLSSREIFLNTSMHEIMGASCSGVDS 855
Query: 888 SSLNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSEM 930
S ++ V S + + +CFP++L QKK R+S +S +
Sbjct: 856 SKEEGHNGVHLVPSLPNSDNRSNCFPQSLWFQKKFRSSYSSNL 898
>gi|147765605|emb|CAN69246.1| hypothetical protein VITISV_010442 [Vitis vinifera]
Length = 1057
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/656 (63%), Positives = 492/656 (75%), Gaps = 27/656 (4%)
Query: 376 GRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLE 435
RSRD KE+D+VRIN++ R+ SL+K A P SSRFK+FIIDEC LL GETWATVLNSL+
Sbjct: 416 ARSRDSKEIDTVRINQTGRMRSLIKHAIGRPVSSRFKVFIIDECHLLRGETWATVLNSLD 475
Query: 436 NISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALD 495
++ QHVVF+MITP LDKLPRSA+SRSQ+YHFPKIKD DIAS+L RICVEE + FDQ ALD
Sbjct: 476 DLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDADIASKLGRICVEECLEFDQVALD 535
Query: 496 FIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTV 555
FIAAKSNGS+RDAEM+LDQLSLLGK+IT+S+ YELIGIVSDDELLDLLDLALSSDTSNTV
Sbjct: 536 FIAAKSNGSLRDAEMMLDQLSLLGKRITMSMTYELIGIVSDDELLDLLDLALSSDTSNTV 595
Query: 556 IRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRAL 615
RARELMRS+IDPMQLISQLANLIMDILAGKC E SE R NFF HTSE D+QKLS AL
Sbjct: 596 RRARELMRSRIDPMQLISQLANLIMDILAGKCQEGTSEVRXNFFEGHTSEVDLQKLSHAL 655
Query: 616 KILSETEKQLRMSKHQTTWLTVALLQLSSSESS-LDLNDSKLCLRYAHDKDGDSHCTISP 674
KILSETEKQLR SK+QTTWLTVALLQLSS ESS LD NDS+ LR H P
Sbjct: 656 KILSETEKQLRASKNQTTWLTVALLQLSSVESSFLDANDSRAFLRTEH-----------P 704
Query: 675 R-DSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSL 733
R ++ K LV +C +K + ED KG LE +WK ATE+CQS+SLK FLRKQGKLSS+
Sbjct: 705 RGENVKRLVTCACDNNKPHICEVQEDCKGQLEFLWKQATEICQSSSLKNFLRKQGKLSSV 764
Query: 734 HVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVS-----AKEN 788
V+ G+AVAELEF H DYVS+AEKSWKLIAS+LQS+LGCNVEIR+ AP + AK
Sbjct: 765 IVSQGMAVAELEFQHPDYVSKAEKSWKLIASSLQSILGCNVEIRINLAPCTSVKGYAKVK 824
Query: 789 KPSFSLFSCSRWVQ-QSRSTTERETD-SDYSDYFSEKPMIRARHTLTCSSDCGSQMSHNC 846
KPSFS FSCSR ++ +S ST+E +D SD SD+ SEK MIR + TCSSDCGSQ+SH C
Sbjct: 825 KPSFSFFSCSRRMRLKSHSTSEHGSDQSDCSDFTSEKAMIRDKTIGTCSSDCGSQVSHVC 884
Query: 847 CHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDISRSAGCEISSLNRNDYYCQVLSPQEPE 906
+T+ R LR+ EGNVL GT++ HRS QB+I + G E+ S C QEPE
Sbjct: 885 YXRTEAARTLRNREGNVLGIGTITPHRSFQBEIPKGTGFEVGSSKEEQSSCGC---QEPE 941
Query: 907 TQPSCFPRTLRLQKKLRASDTSEMVC----TSNKLALSIPKKTSFDTYISVDDPHVFYGS 962
QP+C T L KKLR+S+ S+M C NKLALS+PK TSF+ Y +D + F S
Sbjct: 942 NQPNCLFNTFGLHKKLRSSEASQMTCLRYQAQNKLALSVPKNTSFEPYFWANDRYAFSSS 1001
Query: 963 SNYHHSSVRDEDGPQENSDVLCWRTPTFPLKKAGQMAHQRKRSNIMDCILPCTNAK 1018
SN +S RDEDG +E+S V CW PTFPLKKA Q H+R+ SN++ +LPC K
Sbjct: 1002 SNNFNSCPRDEDGLREDSKVHCWGAPTFPLKKAWQSRHRREGSNLVGWVLPCGATK 1057
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/329 (50%), Positives = 210/329 (63%), Gaps = 14/329 (4%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNG 60
M+GRRHSVDIPIS+TL+ALRRVRSLRDPSTNSMSKFSAL+D++NWETNSSNGIS RF NG
Sbjct: 93 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKFSALVDSLNWETNSSNGISLRFVNG 152
Query: 61 CK--GLFESESLSINGLKKEKDDDLELHCGL--DNSKFMSFQNLGWIDTDN--PNLIKQV 114
+ G + L + +++ EL+ GL + K S +N G+ P + K+
Sbjct: 153 FQEGGPDNNGXLGLENFPGQRE---ELYGGLRKPDPKLFSSENPGFFGNTGLAPTVTKRA 209
Query: 115 DRLDNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVGSSSM 174
D LD + +EE +SL ER C D+ P S +E C GP +GSS
Sbjct: 210 DGLDYCGTIKEEAYDKKSLSERYCSGLRENGLDLMNITPSSNGLEGADSCNGPILGSSHA 269
Query: 175 EDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIM---ANHSRSLFANEEID- 230
E D AS WK QYKN+ + S V +PCPS+S+++ ++ S SL ANEE +
Sbjct: 270 ERTDHXASKWKSQYKNQLKSFTGLGDVVSCVGSPCPSLSDVLLEGSSRSTSLLANEESNA 329
Query: 231 VNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRS-GHKLINNEIST 289
++ + GCG+ CCWSRTPR R+SNL SD+EDNPLL GE+GET G+ K NNEI+
Sbjct: 330 IDHNDRGCGIRCCWSRTPRFRESNLLSDVEDNPLLLGEVGETILSGQKWSWKCFNNEITP 389
Query: 290 YSETPWSLSQKFRPNFFDELVGQNVVVRS 318
YSE+P SLSQKFRP F+ELVGQNVV RS
Sbjct: 390 YSESPRSLSQKFRPKAFNELVGQNVVARS 418
>gi|125579060|gb|EAZ20206.1| hypothetical protein OsJ_35804 [Oryza sativa Japonica Group]
Length = 949
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1000 (43%), Positives = 589/1000 (58%), Gaps = 85/1000 (8%)
Query: 4 RRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNGCKG 63
RRHSVD+P+SRTL+ L+RVRSLRDP+TNS+SK+++ DN+ WET SSNG++ D G
Sbjct: 5 RRHSVDVPLSRTLVQLKRVRSLRDPATNSLSKYASPSDNMIWETASSNGVA--MDLG--- 59
Query: 64 LFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDTDNPNLIK--QVDRLDNYQ 121
S + E+D DLE L + + N +++K ++ N Q
Sbjct: 60 ------RSAHHQLIEEDGDLEAEATLGSERSFRAPNARTASYRKSSVVKIRGLNPPRNKQ 113
Query: 122 SKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVGSSSMEDIDQSA 181
+ DGH + NH + + +M V + ++S
Sbjct: 114 AHRARQDGHRKSVDSSHSNHSSIR-QLANTM--------VNNVAEEKEEEEEVNSYERSV 164
Query: 182 SIWKLQYKNEGRLCG------AANGGASRVSTPCPSISEIMANHSR-----SLFANEEID 230
+ E ++ G ++ SRV +PC S SE + SR + +N+ +
Sbjct: 165 PTPPAKTDEEVKMPGFSKFRNKSSAAMSRVGSPCMSASEARSVRSRRTEETQVRSNDVVG 224
Query: 231 VNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTY 290
N S GCG+S CWS + R+ SD + PLLS E + A E Y
Sbjct: 225 SNFS--GCGISYCWSGASKYRELYYDSDGPEQPLLSPEGTDAAF----------QENVPY 272
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
+ETP LSQKFRP F EL+G NVV +SLL + +G V YLFHGPRGTGKTS +RIFA
Sbjct: 273 TETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTSTARIFA 332
Query: 351 AALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSR 410
AALNCLSLE+Q+PCG C+EC + SGRSRDVKE+D+ +++R RV +L+KSA L P+SSR
Sbjct: 333 AALNCLSLEEQRPCGFCKECVILFSGRSRDVKELDAAKMDRLGRVKALLKSASLVPYSSR 392
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
FK+FI+DEC LL + W+ +L SL+ +H V++MIT ++D LPR++++ QK+HFPKIK
Sbjct: 393 FKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDSLPRTSITHCQKFHFPKIK 452
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530
DI RL RIC+EE + FD L FI+AKSNGS+RDAE++LDQLSLLGKKIT+SL +EL
Sbjct: 453 VADIVYRLERICIEEGLEFDHDGLYFISAKSNGSLRDAEIMLDQLSLLGKKITISLVHEL 512
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED 590
+G VSDDEL++LLDLALSSDT+NTV RARELM S IDP+QL+SQLANLIMDIL+G+C
Sbjct: 513 VGSVSDDELIELLDLALSSDTTNTVRRARELMASAIDPLQLVSQLANLIMDILSGRCQSA 572
Query: 591 CSEARKNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+E K+F G++ +E ++KL ALKILSETEKQLR S++Q TW+TVALLQ ++ES+L
Sbjct: 573 VTEVSKSFLGRYALAEVGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQFGTNESNL 632
Query: 650 DLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGS---CVGDKANKLGALEDY--KGTL 704
A D +H I D + V S C +NK E + + L
Sbjct: 633 ----------IAESNDMHAHSAIGYTDDWVSKVNSSSNFCHACNSNKSNCSERHCRRLKL 682
Query: 705 ESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIAS 764
E+IW+ A CQS S K FLRK+G LSS+HV LA+AE+ F H D++SRAEK LI S
Sbjct: 683 ENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEELAIAEVGFSHPDHISRAEKMQSLIES 742
Query: 765 TLQSVLGCNVEIRLLCAP----VSAKENKPSFSLFSCSRWVQQSRSTTERETDSDYSDYF 820
TLQ+VLGCNVE++ P A+ + SFSL SCS Q+ +DS +D
Sbjct: 743 TLQNVLGCNVEVKFKLVPRPVRKDARSKRQSFSLLSCSGRKQEL-------SDSAVTD-- 793
Query: 821 SEKPMIRARHTLTCSSDCGS-QMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDI 879
E +R T S S Q S +TD + E + S T++ +RS+ DD+
Sbjct: 794 -EDETVRHGARETPSKGYSSQQQSPFIMQRTDSKPTVHGCEDDARS--TLTSNRSMTDDM 850
Query: 880 SRSAGCEISSLNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSEMVCTS----N 935
+R+ E + + S QEP+ QP+CF RTL+LQK+ +SD + +C N
Sbjct: 851 TRTCRSETNYSKGVSEQGRFDSIQEPDLQPNCFSRTLKLQKRFFSSDAAHTICLKIQPHN 910
Query: 936 KLALSIPKKTSFDTYISVDDPHVFYGSSNYHHS-SVRDED 974
K+ +PKK FDTY +P+ SN H + S RD++
Sbjct: 911 KMDF-LPKK-EFDTYFCAYEPYEQCSRSNSHATCSSRDDN 948
>gi|297803640|ref|XP_002869704.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315540|gb|EFH45963.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 818
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/882 (49%), Positives = 562/882 (63%), Gaps = 113/882 (12%)
Query: 2 EGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRF-DNG 60
E RRHSVD+PI+RTL+ALRRVRSLRDP T SMSKF++LLDNV WET S+NGIS +F ++G
Sbjct: 3 ETRRHSVDVPITRTLVALRRVRSLRDPCTTSMSKFASLLDNVKWETGSNNGISLQFVEHG 62
Query: 61 CKGLFESESLSINGLKKEKDDDL--ELHCGLDNSKFMSFQNLGWIDTDNPNLIKQVDRLD 118
+ + + GL + EL G D K S + V+
Sbjct: 63 DDACKAAAADATVGLIPFGSYSIMEELESGCDLHKLSS-------------KVLNVEGDA 109
Query: 119 NYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVGSSSMEDID 178
+S + +G S+ R ++ C++P S+ ++
Sbjct: 110 CSRSSQRSCNGDLSVKGR----------ELACNVP-------------------SISHVE 140
Query: 179 QSASIWKLQYKN-EGRLCGAANGGASRVSTPCPSISEIMANHSRSLFANEEIDVN-QSHH 236
++AS + + + +L + SR+ +P M + + S + +E++D + QS+
Sbjct: 141 EAASGGRYRTNHYSTKLASSVGEYGSRLGSP-------MTSTNHSYYGDEDVDFDSQSNR 193
Query: 237 GCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWS 296
GCG++ CWSRTPR R SN SSD+E+ PLL G + H++++ S
Sbjct: 194 GCGITYCWSRTPRYRGSNQSSDVEEYPLLPGNGNGESDVVTPSHEVLSR----------S 243
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
LSQKFRP FDELVGQ VVV+ LLS I RG +TS YLFHGPRGTGKTS S+IFAAALNCL
Sbjct: 244 LSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCL 303
Query: 357 S-LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S +PCGLC EC + SGR RDV E DS ++NR + SL+K+A LPP +SRFK+FI
Sbjct: 304 SQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKNASLPPVTSRFKVFI 363
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDECQLL ETW T+LNSL+N SQH VF+++T EL+KLPR+ LSRSQKYHF K+ D DI+
Sbjct: 364 IDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADIS 423
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
++L +ICVEE I+FDQ A+DFIA+KS+GS+RDAE++LDQLSLLGK+IT SLAY+LIG+VS
Sbjct: 424 TKLAKICVEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLIGVVS 483
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN+IMDI+AG E S R
Sbjct: 484 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESSSATR 543
Query: 596 KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSK 655
F +HTSE +MQKL ALKILS+ EK LR SK+QTTWLTVALLQLS+++SS
Sbjct: 544 LRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQLSNTDSS------- 596
Query: 656 LCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGD---KANKLGALEDYKGTLESIWKTAT 712
+A D++G + + +D C GD + ++ K T+E++WKT T
Sbjct: 597 ---SFATDENGRNQIS---KDVELSSTSSDCPGDVIKSETEERQKKNCKETVETVWKTVT 650
Query: 713 ELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGC 772
+LC S+SLK FL K+G+L+SL V+ G+A+AELEF+ +V+RAEKSWKLIA + QSVLGC
Sbjct: 651 DLCCSDSLKRFLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKSWKLIADSFQSVLGC 710
Query: 773 NVEIRL-----LCAPVSAKENKPS--FSLFSCSRWVQQSRSTTERETDSDYSDYFSEKP- 824
NVEIR+ C+P + + S F LFSCSR + T R TDSD + SEKP
Sbjct: 711 NVEIRMNLVISACSPPKSAKAAASLFFGLFSCSRRMLHKSYLTSR-TDSDCT---SEKPA 766
Query: 825 -----------MIRARHT---------LTCSSDCGSQMSHNC 846
++RAR ++CSSD G S C
Sbjct: 767 VTNSLRSCQGNVLRARSVRSSANASSRMSCSSDQGDANSAMC 808
>gi|125536334|gb|EAY82822.1| hypothetical protein OsI_38032 [Oryza sativa Indica Group]
Length = 950
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/1002 (42%), Positives = 581/1002 (57%), Gaps = 123/1002 (12%)
Query: 4 RRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNGCKG 63
RRHSVD+P+SRTL+ L+RVRSLRDP+TNS+SK+++ DN+ WET SSNG++ D G
Sbjct: 5 RRHSVDVPLSRTLVQLKRVRSLRDPATNSLSKYASPSDNMIWETASSNGVA--MDLG--- 59
Query: 64 LFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDTDNPNLIK--QVDRLDNYQ 121
S + E+D DLE L + + N +++K ++ N Q
Sbjct: 60 ------RSAHHQLIEEDGDLEAEATLGSERSFRAPNARTASYRKSSVVKIRGLNPPRNKQ 113
Query: 122 SKEEEVDGHESLGERRCINHLN----------------------REFDMCCSMPYSQPME 159
+ DGH + NH + ++ P ++ E
Sbjct: 114 AHRARQDGHRKSVDSSHSNHSSIRQLANTMVNNVAEEKEEEEEVNSYERSVPTPLAKTDE 173
Query: 160 DV---GFCKGPNVGSSSMEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIM 216
+V GF K N S++M SRV +PC S SE
Sbjct: 174 EVKMPGFSKFRNKSSAAM----------------------------SRVGSPCMSASEAR 205
Query: 217 ANHSR-----SLFANEEIDVNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGE 271
+ SR + +N+ + N S GCG+S CWS + R+ SD + PLLS E +
Sbjct: 206 SVRSRRTEETQVRSNDVVGSNFS--GCGISYCWSGASKYRELYYDSDGPEQPLLSPEGTD 263
Query: 272 TAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSF 331
A E Y+ETP LSQKFRP F EL+G NVV +SLL + +G V
Sbjct: 264 AAF----------QENVPYTETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPM 313
Query: 332 YLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINR 391
YLFHGPRGTGKTS +RIFAAALNCLSLE+Q+PCG C+EC + SGRSRDVKE+D+ +++R
Sbjct: 314 YLFHGPRGTGKTSTARIFAAALNCLSLEEQRPCGFCKECVILFSGRSRDVKELDAAKMDR 373
Query: 392 SDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
RV +L+KSA L P+SSRFK+FI+DEC LL + W+ +L SL+ +H V++MIT ++D
Sbjct: 374 LGRVKALLKSASLVPYSSRFKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDID 433
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
LPR++++ QK+HFPKIK DI RL RIC+EE + FD L FI+AKSNGS+RDAE++
Sbjct: 434 SLPRTSITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFISAKSNGSLRDAEIM 493
Query: 512 LDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQL 571
LDQLSLLGKKIT+SL +EL+G VSDDEL++LLDLALSSDT+NTV RARELM S IDP+QL
Sbjct: 494 LDQLSLLGKKITISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMASAIDPLQL 553
Query: 572 ISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKH 630
+SQLANLIMDIL+G+C +E K+F G++ +E ++KL ALKILSETEKQLR S++
Sbjct: 554 VSQLANLIMDILSGRCQSAVTEVSKSFLGRYALAEVGIKKLRHALKILSETEKQLRTSRN 613
Query: 631 QTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGS---CV 687
Q TW+TVALLQ ++ES+L A D +H + D + V S C
Sbjct: 614 QATWVTVALLQFGTNESNL----------IAESNDMHAHSAMGYTDDWVSKVNSSSNFCH 663
Query: 688 GDKANKLGALEDY--KGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELE 745
+NK E + + LE+IW+ A CQS S K FLRK+G LSS+HV LA+AE+
Sbjct: 664 ACNSNKSNCSERHCRRLKLENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEELAIAEVG 723
Query: 746 FHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAP----VSAKENKPSFSLFSCSRWV 801
F H D++SRAEK LI S LQ+VLGCNVE++ P A+ + SFSL SCS
Sbjct: 724 FSHPDHISRAEKMQSLIESALQNVLGCNVEVKFKLVPRPVRKDARSKRQSFSLLSCSGRK 783
Query: 802 QQSRSTTERETDSDYSDYFSEKPMIR--ARHTLTCSSDCGSQMSHNCCHKTDVVRALRSS 859
Q+ +DS +D E +R AR T + Q S +TD +
Sbjct: 784 QEL-------SDSAVTD---EDETVRHGARETPSKGYSSSQQQSPFIMQRTDSKPTVHGC 833
Query: 860 EGNVLSTGTVSFHRSIQDDISRSAGCEISSLNRNDYYCQVLSPQEPETQPSCFPRTLRLQ 919
E + S T++ +RS+ DD++R+ E + + S QEP+ QP+CF RTL+LQ
Sbjct: 834 EDDARS--TLTSNRSMTDDMTRTCRSETNYSKGVSEQGRFDSIQEPDLQPNCFSRTLKLQ 891
Query: 920 KKLRASDTSEMVCTS----NKLALSIPKKTSFDTYISVDDPH 957
K+ +SD + +C NK+ +PKK FDTY +P+
Sbjct: 892 KRFFSSDAAHTICLKIQPHNKMDF-LPKK-EFDTYFCAYEPY 931
>gi|357164239|ref|XP_003579992.1| PREDICTED: uncharacterized protein LOC100823838 [Brachypodium
distachyon]
Length = 977
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/1029 (42%), Positives = 599/1029 (58%), Gaps = 104/1029 (10%)
Query: 4 RRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNGCKG 63
RRHSVD+P+SRTL+ L+RVRSLRDP+TNS+S++++ DN+ WET SSNG+
Sbjct: 5 RRHSVDVPLSRTLVQLKRVRSLRDPATNSLSRYASASDNMIWETASSNGVPIEL------ 58
Query: 64 LFESESLSINGLKKEKDDDLELHCGLD--------NSKFMSFQNLGWIDTD--NPNLIKQ 113
S S + E+D D E + N++ S++ + NP KQ
Sbjct: 59 -----SRSTHHQLIEEDGDFEAEAAMGSERSLRAPNARTTSYRKSSVVKIRGLNPPRNKQ 113
Query: 114 VDRLDNYQSKEEEVDGHESLGERRCI--NHLNREFDMCCSMPYSQPMEDVGFCKGPNVGS 171
V R+ DGH R+ + NH N + + + ++ K
Sbjct: 114 VHRVRG--------DGH-----RKSVDSNHSN---NSSLRQLANNVVNNMEEKKEEEEEV 157
Query: 172 SSMEDID---QSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRS------ 222
+S E D + +++ + + ++ SRV +PC S SE + SR
Sbjct: 158 NSYERADVLLPEKTDEEVKMPGQSKFRDKSSAAMSRVGSPCMSASEARSVGSRRSTLGHG 217
Query: 223 -----LFANEEIDVNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGR 277
+ +N+ + N S GCG+S CWS + R SD + PLLS E E A
Sbjct: 218 TEDTRVRSNDVVGSNFS--GCGISYCWSGASKYRDLYSDSDGPEQPLLSTEGTEVAF--- 272
Query: 278 SGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGP 337
+ + Y+ETP LSQKFRP F EL+G NVV +SLL + +G V YLFHGP
Sbjct: 273 -------QDNAPYTETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGP 325
Query: 338 RGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGS 397
RGTGKTS +RIFAAALNCLSLE+Q+PCG C+EC + SGRSRDVKE+D+ +++R RV +
Sbjct: 326 RGTGKTSTARIFAAALNCLSLEEQRPCGFCKECVILFSGRSRDVKELDAAKLDRLGRVKA 385
Query: 398 LMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSA 457
L+KSA L P+SSRFK+FI+DEC LL + W+ ++ SL+ +H V++MIT +LD LPR++
Sbjct: 386 LLKSASLVPYSSRFKVFIVDECHLLQEDAWSAIMKSLDEPYRHTVYIMITSDLDSLPRAS 445
Query: 458 LSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL 517
++ QK+HFPKIK DI RL RIC+EE + FD L FIAAKSNGS+RD+E++LDQLSL
Sbjct: 446 ITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFIAAKSNGSLRDSEIMLDQLSL 505
Query: 518 LGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN 577
LGK++T+SL +EL+G+VSDDEL++LLDLALSSDT+NTV RARELM S IDP+QL+SQLAN
Sbjct: 506 LGKRVTVSLVHELVGLVSDDELIELLDLALSSDTTNTVRRARELMASSIDPLQLVSQLAN 565
Query: 578 LIMDILAGKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLT 636
LIMDIL+G+C +E K+F ++ +E +QKL ALKILSETEKQLR S+++ TW+T
Sbjct: 566 LIMDILSGRCQSAVTEVSKSFLERYALAEVGIQKLRHALKILSETEKQLRTSRNKATWVT 625
Query: 637 VALLQLSSSESSL--DLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKL 694
VALLQ ++E ++ D ND AH G + +S +S + C +NK
Sbjct: 626 VALLQFGTNECNIVADTNDMN-----AHSATGYTDDWVSKVNSSSNF----CDACNSNKS 676
Query: 695 GALEDY--KGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYV 752
E Y + LE+IW+ A CQS S K+FL+K+G LSS+HV LA+AE+ F H D++
Sbjct: 677 NCSERYCRRLKLENIWRRAIGKCQSRSAKSFLKKEGILSSVHVTEELAIAEVGFSHPDHL 736
Query: 753 SRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKEN----KPSFSLFSCSRWVQQSRSTT 808
SRAEK LI S LQ VLG NVEI+ P +A+++ + SFSL SCS Q+ +T
Sbjct: 737 SRAEKMQSLIESMLQHVLGFNVEIKFKIVPRAARKDGRLKRHSFSLLSCSGRKQELSDST 796
Query: 809 ERETDSDYSDYFSEKPMIRARHTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGT 868
TD D E AR T Q S + D + E + S T
Sbjct: 797 --VTDED------ETVRHGARETPLKGYSSSQQQSPFIVQRVDSKPRVHGCEDDARS--T 846
Query: 869 VSFHRSIQDDISRSAGCEISSLNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTS 928
++ +RS+ DD +R+ E + + S QEP+ QP+CF RTL+LQK+ +SD +
Sbjct: 847 LTSNRSMTDDQTRTCRSETNYSKGASEQGRFDSIQEPDLQPNCFSRTLKLQKRFFSSDAA 906
Query: 929 EMVC----TSNKLALSIPKKTSFDTYISVDDPHVFYGSSNYHHS-SVRDED----GPQEN 979
+C NK+ +PKK FDTY +P+ SN + RDED +
Sbjct: 907 HTICFRIQPHNKMGF-LPKK-EFDTYFCAYEPYEQCPRSNSRATYGSRDEDLSIKSSRFG 964
Query: 980 SDVLCWRTP 988
S++LCWR P
Sbjct: 965 SNLLCWRGP 973
>gi|413918695|gb|AFW58627.1| hypothetical protein ZEAMMB73_598041 [Zea mays]
Length = 995
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/1027 (42%), Positives = 594/1027 (57%), Gaps = 102/1027 (9%)
Query: 4 RRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNGCKG 63
RRHSVD+P+SRTL+ L+R+RSLRDP+TNSM KF++ D++ WET SSNG++
Sbjct: 33 RRHSVDVPLSRTLVQLKRLRSLRDPATNSMGKFASPADHMVWETASSNGVALELGR---- 88
Query: 64 LFESESLSINGLKKEKDDDLELHCGLD--------NSKFMSFQNLGWIDTD--NPNLIKQ 113
S + + E+D+D+ + N++ S++ + NP KQ
Sbjct: 89 -------SAHNHQVEEDEDVGAEPTMGSERSFRGPNARTASYRRSSAVRIRGLNPPRNKQ 141
Query: 114 VDRL---DNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVG 170
V R+ + +S + H S+ R+ N+L D E+V + P
Sbjct: 142 VHRVRRDGHRKSVDSSHSNHSSI--RQLANNLVNNVDA---------EEEVNSYERPKFA 190
Query: 171 SSSMEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRS---LFANE 227
D D+ ++ + + SRV +PC S SE + H L +N+
Sbjct: 191 MPGKSDEDE------VKMPGHSKFRSKPSAAMSRVGSPCMSASEARSGHGTEDTRLRSND 244
Query: 228 EIDVNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEI 287
+ N S GCG+S CWS + R+ SD D PLLS + E A G
Sbjct: 245 VVGSNFS--GCGISYCWSGASKCRELYSDSDGPDQPLLSTDGTEAAFQGNV--------- 293
Query: 288 STYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASR 347
Y+ETP LSQKFRP F ELVG NVV +SLL + +G V YLFHGPRGTGKTS +R
Sbjct: 294 -PYTETPRCLSQKFRPRSFSELVGLNVVAQSLLYSCCKGKVAPMYLFHGPRGTGKTSTAR 352
Query: 348 IFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPF 407
IFAAALNC+SLE+Q+PCG C+EC + SG+ RDVKE+D ++ R RV +L+KSA L P+
Sbjct: 353 IFAAALNCVSLEEQRPCGFCKECVILFSGKGRDVKELDVAKMGRLGRVKALLKSASLVPY 412
Query: 408 SSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFP 467
SSRFK+FIIDEC LL + W+ +L SL+ +H V++MIT +++ LPR++++R QK+HFP
Sbjct: 413 SSRFKVFIIDECHLLQEDAWSAILKSLDEPYRHTVYIMITSDIESLPRASITRCQKFHFP 472
Query: 468 KIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527
KIK DI RL +IC+ E + FD L FIAAKS+GS+RD+E++LDQLSLLGKKIT+SL
Sbjct: 473 KIKVADIVYRLEKICIGEGLEFDHDGLYFIAAKSSGSLRDSEVMLDQLSLLGKKITISLV 532
Query: 528 YELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC 587
+EL+G VSDDEL++LLDLALSSDT+NTV RARELM S IDP+QL+SQLANLIMDIL+G+C
Sbjct: 533 HELVGSVSDDELIELLDLALSSDTTNTVRRARELMGSAIDPLQLVSQLANLIMDILSGRC 592
Query: 588 LEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
SE K+F G++ SE ++KL ALKILSETEKQLR S++Q TW+TVALLQ ++E
Sbjct: 593 QSAVSEVSKSFLGRYALSEVGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQFGTNE 652
Query: 647 SSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGS---CVGDKANKLGALEDY--K 701
+L A D SH D + V + C ++K E + +
Sbjct: 653 PNL----------IAEPNDMHSHSVTGYTDDWVSKVHSNTNFCQACNSSKSNCSERHCRR 702
Query: 702 GTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKL 761
LE+IW+ A C+S S K+FLRK+G LSS+HV LA+AE+ F H D++SRAEK L
Sbjct: 703 LKLENIWRRAIGKCRSRSAKSFLRKEGFLSSVHVTEELAIAEVGFGHPDHLSRAEKMQSL 762
Query: 762 IASTLQSVLGCNVEIRLLCAPVSAKEN----KPSFSLFSCSRWVQQSRSTTERETDSDYS 817
I +LQ VLGCNVEIR P +++ + SFS SCS Q+ +DS +
Sbjct: 763 IECSLQHVLGCNVEIRFKLVPCPVRKDARLKRHSFSFLSCSGRKQEL-------SDSVVT 815
Query: 818 DYFSEKPMIR--ARHTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSI 875
D E +R AR T Q S + D E + S T++ +RS+
Sbjct: 816 D---EDEAVRPGARETPLKGYTSSQQESPYTMQRVDSKPTAYGCEDDGRS--TLTSNRSM 870
Query: 876 QDDISRSAGCEIS-SLNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSEMVC-- 932
DD++R+ E + S + S QEP+ QPSCF RTLRLQKKL +S + +C
Sbjct: 871 TDDMTRTCRSETNYSKGGVSDQGRFGSIQEPDLQPSCFSRTLRLQKKLLSSGAAHTICLR 930
Query: 933 --TSNKLALSIPKKTSFDTYISVDDPHVFYGSSNYHHS-SVRDEDGPQEN----SDVLCW 985
NK+ +PKK FDTY +P+ S + S RD+D +N S++LCW
Sbjct: 931 IQPHNKMEF-LPKK-EFDTYFCAYEPYEQCPRSVSRATYSSRDDDLWSKNSRFGSNLLCW 988
Query: 986 RTPTFPL 992
+ P P+
Sbjct: 989 KAPKQPM 995
>gi|326500876|dbj|BAJ95104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 974
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/1028 (41%), Positives = 593/1028 (57%), Gaps = 105/1028 (10%)
Query: 4 RRHSV--DIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNGC 61
RRHSV D+P+SRTL+ L+RVRSLRDP+TNSMSK+++ D++ WET SSNG
Sbjct: 5 RRHSVSVDVPLSRTLVQLKRVRSLRDPATNSMSKYASPSDSMIWETASSNG--------- 55
Query: 62 KGLFESESLSINGLKKEKDDDLELHCGLD--------NSKFMSFQ--NLGWIDTDNPNLI 111
+ E S S + E+D DLE + N++ S++ ++ I NP
Sbjct: 56 -AMMEG-SRSAHHHLIEEDVDLEAQATMGSERSFRAPNARTASYRKSSVVRIRGLNPPRN 113
Query: 112 KQVDRL---DNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPN 168
KQV R+ + +S + H SL R+ N++ E
Sbjct: 114 KQVHRVRGDGHRKSVDSNHSNHSSL--RQLANNIVTNVVEEKEEEEVNSYERA------- 164
Query: 169 VGSSSMEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSR------- 221
+ S E++ K + G ++ S +PC S SE + SR
Sbjct: 165 LPEKSEEEV-----------KRRSKFKGKSSAAMSHAGSPCMSASEARSVGSRRSTLGHG 213
Query: 222 ----SLFANEEIDVNQSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGR 277
+ +N+ + N S GCG+S CWS + R SD + PLLS E
Sbjct: 214 TEDTRVRSNDVVGSNFS--GCGISYCWSGASKYRDLYSDSDGPEQPLLSPE--------- 262
Query: 278 SGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGP 337
G ++ E Y+ETP LSQKFRP F EL+G NVV +SLL + +G + YLFHGP
Sbjct: 263 -GTEVPFQENVPYTETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKIAPMYLFHGP 321
Query: 338 RGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGS 397
RGTGKTS +RIFAAALNCLSLE+Q+PCG C+EC + SGRSRDVKE+D+ +++R RV +
Sbjct: 322 RGTGKTSTARIFAAALNCLSLEEQRPCGFCKECVILFSGRSRDVKEIDASKMDRLGRVKA 381
Query: 398 LMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSA 457
L+KSA L P+SSRFK+FI+DEC LL + W+ ++ SL+ +H V++MIT +LD LPR++
Sbjct: 382 LLKSASLVPYSSRFKVFIVDECHLLLEDAWSAIVKSLDEPYRHTVYIMITSDLDSLPRTS 441
Query: 458 LSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL 517
++ QK+HFPKIK DI RL RIC++E + FD AL FIAAKSNGS+RDAE++LDQLSL
Sbjct: 442 VTYCQKFHFPKIKVADIVHRLERICIDEGLEFDHDALHFIAAKSNGSLRDAEIMLDQLSL 501
Query: 518 LGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN 577
LGK++T+SL +EL+G+VSDDEL++LLDLALSSDT+NTV RARELM S +DP+QL+SQLAN
Sbjct: 502 LGKRVTISLVHELVGLVSDDELIELLDLALSSDTTNTVRRARELMASSVDPLQLVSQLAN 561
Query: 578 LIMDILAGKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLT 636
LIMDIL+G+C +E K+F G++ ++ ++KL ALKILSE EKQLR S+++ TW+T
Sbjct: 562 LIMDILSGRCQSAVTEVSKSFLGRYALADVGIEKLRHALKILSEAEKQLRTSRNKATWVT 621
Query: 637 VALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGA 696
VALLQ S+ES + + + R A D ++ +F C +NK
Sbjct: 622 VALLQFGSAESDIVAETNDMHARSATGYTDDWVSKVNSSSNF-------CDACNSNKSNC 674
Query: 697 LEDY--KGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSR 754
E + + LE+IW+ A CQS S K+FL+K+G LSS+HV +A+AE+ F H D++SR
Sbjct: 675 SERHCRRLKLENIWRRAIGKCQSRSAKSFLKKEGILSSVHVTEEVAIAEVGFSHPDHLSR 734
Query: 755 AEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKEN----KPSFSLFSCSRWVQQSRSTTER 810
AEK LI LQ VLG NVEIR P +A+++ + SFSL CS Q+ +T
Sbjct: 735 AEKMQSLIQGVLQHVLGFNVEIRFKLVPCAARKDARSKRHSFSLLGCSGRKQELSDST-- 792
Query: 811 ETDSDYSDYFSEKPMIRARHTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVS 870
TD D E AR T Q S + D + SE + S T++
Sbjct: 793 VTDED------EPVRHGARETPLKGYSSSQQPSPFIVQRVDSKPTVHGSEDDARS--TLT 844
Query: 871 FHRSIQDDISRSAGCEISSLNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSEM 930
+RS+ DD++R+ E + + S QEP+ QP+CF RTL+LQK+ +SD +
Sbjct: 845 SNRSMTDDLTRTCRSETNYSKGASEQGRFDSIQEPDLQPNCFSRTLKLQKRFFSSDAAHT 904
Query: 931 VC----TSNKLALSIPKKTSFDTYISVDDPHVFYGSSNYHHS-SVRDED-----GPQENS 980
+C NK+ +PKK FDTY P+ SN + RDED S
Sbjct: 905 ICFRIQPHNKMGF-LPKK-EFDTYFCTYGPYEQCPRSNSRATYGSRDEDLSIKTSSGFGS 962
Query: 981 DVLCWRTP 988
++LCWR P
Sbjct: 963 NLLCWRGP 970
>gi|4220511|emb|CAA22984.1| DNA polymerase III like protein [Arabidopsis thaliana]
gi|7269330|emb|CAB79389.1| DNA polymerase III like protein [Arabidopsis thaliana]
Length = 815
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/716 (52%), Positives = 478/716 (66%), Gaps = 72/716 (10%)
Query: 164 CKGPNVGSSSMEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSL 223
C P S+ ++++ S + + +L + SR+ +P S NHS
Sbjct: 129 CNAP-----SISHVEEAGSGGRYRTHYSTKLASSVGEYGSRLGSPMNS-----TNHS--Y 176
Query: 224 FANEEIDVN-QSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKL 282
+ +E++D + QS+ GCG++ CWSRTPR R SN SSD+E+ PLL G + H++
Sbjct: 177 YGDEDVDFDSQSNRGCGITYCWSRTPRYRGSNQSSDVEEYPLLPGNGNGESDVVTPSHEV 236
Query: 283 INNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGK 342
++ SLSQKFRP FDELVGQ VVV+ LLS I RG +TS YLFHGPRGTGK
Sbjct: 237 LSR----------SLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGK 286
Query: 343 TSASRIFAAALNCLS-LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS 401
TS S+IFAAALNCLS +PCGLC EC + SGR RDV E DS ++NR + SL+KS
Sbjct: 287 TSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKS 346
Query: 402 AFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRS 461
A LPP SSRFK+FIIDECQLL ETW T+LNSL+N SQH VF+++T EL+KLPR+ LSRS
Sbjct: 347 ASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRS 406
Query: 462 QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK 521
QKYHF K+ D DI+++L +IC+EE I+FDQ A+DFIA+KS+GS+RDAE++LDQLSLLGK+
Sbjct: 407 QKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKR 466
Query: 522 ITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD 581
IT SLAY+LIG+VSDDELLDLLDLA+SSDTSNTVIRARELMRSKIDPMQLISQLAN+IMD
Sbjct: 467 ITTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMD 526
Query: 582 ILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
I+AG E S R F +HTSE +MQKL ALKILS+ EK LR SK+QTTWLTVALLQ
Sbjct: 527 IIAGNSQESSSATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQ 586
Query: 642 LSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKAN---KLGALE 698
LS+++SS +A D++G + +D C GD + G
Sbjct: 587 LSNTDSS----------SFATDENGRNQIN---KDVELSSTSSGCPGDVIKSDAEKGQER 633
Query: 699 DYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKS 758
+ T+ES+WKT T+LC S+SLK FL K+G+L+SL V+ G+A+AELEF+ +V+RAEKS
Sbjct: 634 NCNETVESVWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKS 693
Query: 759 WKLIASTLQSVLGCNVEIRL-----LCAPVSAKENKPS--FSLFSCSRWVQQSRSTTERE 811
WKLIA + QSVLGCNVEI++ C+P + + S F LFSCSR + T R
Sbjct: 694 WKLIADSFQSVLGCNVEIQMNLVISACSPPKSAKAAASLFFGLFSCSRRMLHKSYLTTR- 752
Query: 812 TDSDYSDYFSEKP------------MIRARHT---------LTCSSDCGSQMSHNC 846
TDSD + SEKP ++RAR ++CSSD G S C
Sbjct: 753 TDSDCA---SEKPAVTNSLRSCQGNVLRARSVRSSANASSRMSCSSDQGDATSAMC 805
>gi|186513260|ref|NP_194210.2| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|186513264|ref|NP_001119046.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332659557|gb|AEE84957.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332659558|gb|AEE84958.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 857
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/716 (52%), Positives = 478/716 (66%), Gaps = 72/716 (10%)
Query: 164 CKGPNVGSSSMEDIDQSASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSL 223
C P S+ ++++ S + + +L + SR+ +P S NHS
Sbjct: 129 CNAP-----SISHVEEAGSGGRYRTHYSTKLASSVGEYGSRLGSPMNS-----TNHS--Y 176
Query: 224 FANEEIDVN-QSHHGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKL 282
+ +E++D + QS+ GCG++ CWSRTPR R SN SSD+E+ PLL G + H++
Sbjct: 177 YGDEDVDFDSQSNRGCGITYCWSRTPRYRGSNQSSDVEEYPLLPGNGNGESDVVTPSHEV 236
Query: 283 INNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGK 342
++ SLSQKFRP FDELVGQ VVV+ LLS I RG +TS YLFHGPRGTGK
Sbjct: 237 LSR----------SLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGK 286
Query: 343 TSASRIFAAALNCLS-LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS 401
TS S+IFAAALNCLS +PCGLC EC + SGR RDV E DS ++NR + SL+KS
Sbjct: 287 TSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKS 346
Query: 402 AFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRS 461
A LPP SSRFK+FIIDECQLL ETW T+LNSL+N SQH VF+++T EL+KLPR+ LSRS
Sbjct: 347 ASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRS 406
Query: 462 QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK 521
QKYHF K+ D DI+++L +IC+EE I+FDQ A+DFIA+KS+GS+RDAE++LDQLSLLGK+
Sbjct: 407 QKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKR 466
Query: 522 ITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD 581
IT SLAY+LIG+VSDDELLDLLDLA+SSDTSNTVIRARELMRSKIDPMQLISQLAN+IMD
Sbjct: 467 ITTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMD 526
Query: 582 ILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
I+AG E S R F +HTSE +MQKL ALKILS+ EK LR SK+QTTWLTVALLQ
Sbjct: 527 IIAGNSQESSSATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQ 586
Query: 642 LSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKAN---KLGALE 698
LS+++SS +A D++G + +D C GD + G
Sbjct: 587 LSNTDSS----------SFATDENGRNQIN---KDVELSSTSSGCPGDVIKSDAEKGQER 633
Query: 699 DYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKS 758
+ T+ES+WKT T+LC S+SLK FL K+G+L+SL V+ G+A+AELEF+ +V+RAEKS
Sbjct: 634 NCNETVESVWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKS 693
Query: 759 WKLIASTLQSVLGCNVEIRL-----LCAPVSAKENKPS--FSLFSCSRWVQQSRSTTERE 811
WKLIA + QSVLGCNVEI++ C+P + + S F LFSCSR + T R
Sbjct: 694 WKLIADSFQSVLGCNVEIQMNLVISACSPPKSAKAAASLFFGLFSCSRRMLHKSYLTTR- 752
Query: 812 TDSDYSDYFSEKP------------MIRARHT---------LTCSSDCGSQMSHNC 846
TDSD + SEKP ++RAR ++CSSD G S C
Sbjct: 753 TDSDCA---SEKPAVTNSLRSCQGNVLRARSVRSSANASSRMSCSSDQGDATSAMC 805
>gi|242073490|ref|XP_002446681.1| hypothetical protein SORBIDRAFT_06g020470 [Sorghum bicolor]
gi|241937864|gb|EES11009.1| hypothetical protein SORBIDRAFT_06g020470 [Sorghum bicolor]
Length = 855
Score = 637 bits (1642), Expect = e-179, Method: Compositional matrix adjust.
Identities = 377/818 (46%), Positives = 510/818 (62%), Gaps = 58/818 (7%)
Query: 198 ANGGASRVSTPCPSISEIMANHSRS-----------LFANEEIDVNQSHHGCGLSCCWSR 246
++ SRV +PC S SE + SR L +N+ + N S GCG+S CWS
Sbjct: 65 SSAAMSRVGSPCMSASEARSVGSRRSTLGHGTEDTRLRSNDVVGSNFS--GCGISYCWSG 122
Query: 247 TPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFF 306
+ R+ SD D PLLS + E A G Y+ETP LSQKFRP F
Sbjct: 123 ASKYRELYSDSDGPDQPLLSTDGTEAAFQGNV----------PYTETPRCLSQKFRPRSF 172
Query: 307 DELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGL 366
EL+G NVV +SLL + +G V YLFHGPRGTGKTS +RIFAAALNC+SLE+Q+PCG
Sbjct: 173 SELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTSTARIFAAALNCVSLEEQRPCGF 232
Query: 367 CRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGET 426
C+EC + SG+SRDVKE+D+ +++R RV +L+KSA L P+SSRFK+FIIDEC LL +
Sbjct: 233 CKECVILFSGKSRDVKELDAAKMDRLGRVKALLKSASLVPYSSRFKVFIIDECHLLQEDA 292
Query: 427 WATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEA 486
W+ +L SL+ +H V++MIT +++ LPR++++ QK+HFPKIK DI RL RIC+EE
Sbjct: 293 WSAILKSLDEPYRHTVYIMITSDIESLPRTSITHCQKFHFPKIKVADIVYRLERICIEEG 352
Query: 487 INFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLA 546
+ FD L FIAAKSNGS+RD+E++LDQLSLLGKKIT+SL +EL+G VSDDEL++LLDLA
Sbjct: 353 LEFDHDGLYFIAAKSNGSLRDSEIMLDQLSLLGKKITISLVHELVGSVSDDELIELLDLA 412
Query: 547 LSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SE 605
LSSDT+NTV RARELM S IDP+QL+SQLANLIMDIL+G+C +E K+F G++ SE
Sbjct: 413 LSSDTTNTVRRARELMGSAIDPLQLVSQLANLIMDILSGRCQSAVTEVSKSFLGRYALSE 472
Query: 606 ADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKD 665
++KL ALKILSETEKQLR S++Q TW+TVALLQ S++E +L + + +AH
Sbjct: 473 IGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQFSTNEPNLAAEPNDM---HAHSVT 529
Query: 666 GDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLR 725
G + +S S + + +C K+N + LE+IW+ A C+S S K+FLR
Sbjct: 530 GYTDDWVSKVHSSANFCQ-ACNSSKSN-CSERHCRRLKLENIWRRAIGKCRSRSAKSFLR 587
Query: 726 KQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSA 785
K+G LSS+HV LA+AE+ F H D++SRAEK LI +LQ VLGCNVEIR P
Sbjct: 588 KEGFLSSVHVTEELAIAEVGFGHPDHLSRAEKMQSLIECSLQHVLGCNVEIRFKLVPCPV 647
Query: 786 KEN----KPSFSLFSCSRWVQQSRSTTERETDSDYSDYFSEKPMIR--ARHTLTCSSDCG 839
+++ + SFS +CS Q+ +DS +D E ++R AR T
Sbjct: 648 RKDARLKRQSFSFLNCSGRKQEL-------SDSVVTD---EDEVVRPGARETPLKGYTSS 697
Query: 840 SQMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDISRSAGCEISSLNRNDYYCQV 899
Q S + D + E + S T++ +RS+ DD++R+ E + +
Sbjct: 698 QQESPYTMQRVDSKPTVHGCEDDARS--TLTSNRSMTDDLTRTCRSETNYSKGVSEHGHF 755
Query: 900 LSPQEPETQPSCFPRTLRLQKKLRASDTSEMVC----TSNKLALSIPKKTSFDTYISVDD 955
S QEP+ QP+CF RTL+LQKKL +S + +C NK+ +PKK FDTY +
Sbjct: 756 DSIQEPDLQPNCFSRTLKLQKKLLSSGAAHTICLRIQPHNKMDF-LPKK-EFDTYFCAYE 813
Query: 956 PHVFYGSSNYHHS-SVRDEDGPQEN----SDVLCWRTP 988
P+ SN + S RD+D +N S++LCWR P
Sbjct: 814 PYEQCSRSNSRATYSSRDDDLWSKNSRFGSNLLCWRAP 851
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 48/56 (85%), Gaps = 2/56 (3%)
Query: 1 MEGRRHSV--DIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGIS 54
M+ RRHSV D+P+SRTL+ L+RVRSLRDP+TNSMSK+++ D++ WET SSNG++
Sbjct: 2 MDTRRHSVSVDVPLSRTLVQLKRVRSLRDPATNSMSKYASPSDHMIWETASSNGVT 57
>gi|414586712|tpg|DAA37283.1| TPA: hypothetical protein ZEAMMB73_202347 [Zea mays]
Length = 814
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 381/832 (45%), Positives = 506/832 (60%), Gaps = 93/832 (11%)
Query: 203 SRVSTPCPSISEIMANHSRS-----------LFANEEIDVNQSHHGCGLSCCWSRTPRSR 251
SRV +PC S SE + SR L +N+ + N S GCG+S CWS + R
Sbjct: 26 SRVGSPCMSASEARSVGSRRSTLGHGTEDTRLRSNDVVGSNFS--GCGISYCWSGASKYR 83
Query: 252 QSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVG 311
+ SD D PLLS + E A G Y+ET LSQKFRP F EL+G
Sbjct: 84 ELYSDSDGPDQPLLSTDGIEAAFQGNV----------PYTETLRCLSQKFRPRSFSELIG 133
Query: 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371
NVV +SLL + +G V YLFHGPRGTGKTS +RIFAAALNC+SLE+Q+PCG C+EC
Sbjct: 134 LNVVAQSLLYSTCKGKVAPMYLFHGPRGTGKTSTARIFAAALNCVSLEEQRPCGFCKECV 193
Query: 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVL 431
+ SG+SRDVKE+D+ +++R RV +L+KSA L P+SSRFK+FI+DEC LL + W+ +L
Sbjct: 194 ILFSGKSRDVKELDAAKMDRLGRVKALLKSASLVPYSSRFKVFIVDECHLLREDAWSAIL 253
Query: 432 NSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQ 491
SL+ +H V++MIT +++ LPR++++ QK+HFPKIK DI RL RIC+EE + FD
Sbjct: 254 KSLDEPYRHTVYIMITSDIESLPRASITHCQKFHFPKIKVADIVYRLERICIEEGLEFDH 313
Query: 492 AALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDT 551
L FIAAKSNGS+RD+E++LDQLSLLGKK+T+SL +EL+G VSDDEL++LLDLALSSDT
Sbjct: 314 DGLYFIAAKSNGSLRDSEIMLDQLSLLGKKVTISLVHELVGSVSDDELIELLDLALSSDT 373
Query: 552 SNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQK 610
+NTV RARELM S IDP+QL+SQLANLIMDIL+G+C +E K+F G++ SE ++K
Sbjct: 374 TNTVRRARELMGSAIDPLQLVSQLANLIMDILSGRCQSAVTEVSKSFLGRYALSEVGIKK 433
Query: 611 LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS--LDLNDSKLCLRYAHDKDGDS 668
L ALKILSETEKQLR S++Q TW+TVALLQ S++E + + ND +AH G +
Sbjct: 434 LRHALKILSETEKQLRTSRNQATWVTVALLQFSTNEPNPVAETND-----MHAHSVTGYT 488
Query: 669 HCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQG 728
+S S + + +C K+N + LE+IW+ A C+S S K+FLRK+G
Sbjct: 489 DDWVSKVHSSANFCQ-ACNSSKSN-CSERHCRRLKLENIWRRAIGKCRSRSAKSFLRKEG 546
Query: 729 KLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIR--LLCAPVS-- 784
LSS+HV LA+AE+ F H D++SRAEK LI S+LQ VLGCNVEIR L+ PVS
Sbjct: 547 FLSSVHVTEELAIAEVGFEHPDHLSRAEKMQSLIESSLQHVLGCNVEIRFKLVPCPVSKD 606
Query: 785 AKENKPSFSLFSCSRWVQQ------------SRSTTERETD-SDYSDYFSEKPMIRARHT 831
A+ + FS +CS Q+ +R RET Y+ E P R
Sbjct: 607 ARLKRQPFSFLNCSGRKQELSDSVVTDEDEAARGPGARETPLKGYTSSQQESPYTMRR-- 664
Query: 832 LTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDISRSAGCE----- 886
D H C E + ST T S RS DD++R+ E
Sbjct: 665 ----VDSKPTTVHGC-------------EDDARSTLTSS--RSTADDLTRTCRSETGYPK 705
Query: 887 -ISSLNRNDYYCQVLSPQEPETQPSCFPRTLRLQKKLRASDTSEMVC----TSNKLALSI 941
+ R+D + QEP+ QP+CF RTL+LQKKL +S + +C NK+ +
Sbjct: 706 GVREQGRSDG-----TQQEPDLQPNCFSRTLKLQKKLLSSGAAHTICLRVQPHNKMDF-L 759
Query: 942 PKKTSFDTYISVDDPHVFYGSSNYHHS-SVRDEDGPQEN----SDVLCWRTP 988
PKK FDTY +P+ S+ + S RD+D +N S++LCWR P
Sbjct: 760 PKK-EFDTYFCAYEPYEQCPRSDSRATYSSRDDDLWSKNSRFGSNLLCWRAP 810
>gi|413921404|gb|AFW61336.1| hypothetical protein ZEAMMB73_064194 [Zea mays]
Length = 816
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/551 (45%), Positives = 348/551 (63%), Gaps = 30/551 (5%)
Query: 241 SCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWSLSQK 300
SCC S S +S +D G +G+ GR E ST+ E+ SL QK
Sbjct: 128 SCC------SAISGMSRSTKDRAF--GLVGDGEEIGR-------REASTFQESSRSLLQK 172
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F ELVG V+ +SL A+ +G + YLFHGP G GKTS +R FAAALNC S +
Sbjct: 173 YRPRSFSELVGHGVIAQSLSGAVLKGKLAPIYLFHGPHGVGKTSTARTFAAALNCRSPGE 232
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PCG C EC SG S V E+D+ +++ RV +L+++A SS FK+ I+D+CQ
Sbjct: 233 NQPCGRCDECMPIFSGSSSSVVEIDASKLDCKSRVAALLRNACEVLASSHFKVLIVDDCQ 292
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+ E W ++ NSLE I + +FVMIT +++KLP +++ Q Y F KI D +IA RL +
Sbjct: 293 HMDKEGWYSIYNSLEGIPESTIFVMITSDIEKLPSNSIGWCQSYRFCKIDDAEIARRLIK 352
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELL 540
IC +E + F+ ALD +A K+NGSIRDA +LDQL+LLGK+I+ S+ +ELIG VSDDELL
Sbjct: 353 ICTKEGMEFEAEALDLLARKANGSIRDAIQMLDQLTLLGKRISKSVTHELIGDVSDDELL 412
Query: 541 DLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFG 600
DLL+LA+SSD + V RAREL+ SK+DP+QL++QLAN IMDILAGK D SE R+ G
Sbjct: 413 DLLNLAMSSDAATIVRRARELLSSKVDPLQLLAQLANHIMDILAGKHPSDSSEVRR-VTG 471
Query: 601 KHTS-EADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLR 659
KHTS + D+ KL AL+ILSETEKQL+ +K+Q+TWLT ALLQ + E L+D+ +
Sbjct: 472 KHTSADVDVHKLRNALEILSETEKQLKTTKNQSTWLTAALLQFNMREPYC-LDDTAVSSM 530
Query: 660 Y--AHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKG---TLESIWKTATEL 714
+ +H DG + D+ HL NK+ +L+ G LE+IW A E
Sbjct: 531 FTESHTDDGTAALKDESLDTSSHLC-------SQNKISSLDMNLGDPDVLETIWMKALEN 583
Query: 715 CQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNV 774
C S L+ L K GKLSSL+ G+AVAEL+F H + V ++ WK + ++LQ++L C+V
Sbjct: 584 CSSPPLQNLLLKDGKLSSLYTTQGVAVAELQFCHPEVVPTSKNFWKPLCASLQNLLRCSV 643
Query: 775 EIRLLCAPVSA 785
+IR+ +P+S
Sbjct: 644 DIRINLSPISG 654
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNS 49
++GRRHSVDIP+SR L+A+ R RSLRDP TNS++KFSA WE +S
Sbjct: 16 IDGRRHSVDIPVSRALLAIMRSRSLRDPDTNSLAKFSA--KKTIWEGSS 62
>gi|242078039|ref|XP_002443788.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor]
gi|241940138|gb|EES13283.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor]
Length = 802
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 255/545 (46%), Positives = 348/545 (63%), Gaps = 18/545 (3%)
Query: 267 GEIGETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRG 326
G +G+ GR G E ST+ E+ SL QK+RP F ELVG V+ +SL A+ +G
Sbjct: 135 GLVGDGEELGRRG------EASTFQESSRSLLQKYRPKSFSELVGHGVIAQSLSGAVLKG 188
Query: 327 MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDS 386
+ YLFHGP G GKTS +R FAAALNC S +PCG C EC SG S V E+D+
Sbjct: 189 KLAPIYLFHGPHGVGKTSMARTFAAALNCRSPGGNQPCGRCDECVAIFSGSSSSVVEIDA 248
Query: 387 VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMI 446
+++ RV +L+++A P SS FK+ I+D+CQ + E W ++ NSLE I + +FVMI
Sbjct: 249 SKLDCKSRVAALLRNACEVPASSHFKVMIVDDCQHMDKEGWYSIYNSLEGIPESTIFVMI 308
Query: 447 TPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIR 506
T ++DKLP +++ Q Y F KI D +IA RL +IC +E + F+ ALD +A K+NGSIR
Sbjct: 309 TSDIDKLPSNSIGWCQSYRFCKIDDAEIARRLIKICTKEGMEFEAEALDLLARKANGSIR 368
Query: 507 DAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKI 566
DA +LDQL+LLGK+I+ S+ +ELIG VSD+ELLDLL+LA+SSD + V RAREL+ SK+
Sbjct: 369 DAIQMLDQLTLLGKRISKSVTHELIGDVSDEELLDLLNLAMSSDAATIVRRARELLSSKV 428
Query: 567 DPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTS-EADMQKLSRALKILSETEKQL 625
DP+QL++QLANLIMDILAGK D SE R+ GKHTS + D+ KL AL+ILSETEKQL
Sbjct: 429 DPLQLLAQLANLIMDILAGKHPSDSSEVRR-VNGKHTSADVDVHKLRNALEILSETEKQL 487
Query: 626 RMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPR--DSFKHLVR 683
+ +K+Q+TWLT ALLQ + E L+D+ + + + D + D+ HL
Sbjct: 488 KTTKNQSTWLTAALLQFNMREPYC-LDDTAVSSMFTESQTDDGTAVLKDESLDTSSHL-- 544
Query: 684 GSCVGDKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAE 743
C +K + L LE+IW A E C S L+ LRK GKLSSL+ G+AVAE
Sbjct: 545 --CSQNKVSSLDMNLGDPDVLETIWMKALENCSSPPLQNLLRKDGKLSSLYTTQGVAVAE 602
Query: 744 LEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVS---AKENKPSFSLFSCSRW 800
L+F H + V +E WK + ++LQ++L CNV+IR+ +P+S A S SL SR
Sbjct: 603 LQFCHPEVVPTSESFWKPLCASLQNLLRCNVDIRINLSPISGSRAGSKDSSVSLVMESRE 662
Query: 801 VQQSR 805
+Q++
Sbjct: 663 DRQAQ 667
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWE 46
M+GRRHSVDIP+SR L+A+ R RSLRDP TNS++KFSA WE
Sbjct: 2 MDGRRHSVDIPVSRALVAIMRSRSLRDPDTNSLAKFSA--KKTIWE 45
>gi|115474561|ref|NP_001060877.1| Os08g0120200 [Oryza sativa Japonica Group]
gi|42407584|dbj|BAD10815.1| putative DNA polymerase III like protein [Oryza sativa Japonica
Group]
gi|42407921|dbj|BAD09061.1| putative DNA polymerase III like protein [Oryza sativa Japonica
Group]
gi|113622846|dbj|BAF22791.1| Os08g0120200 [Oryza sativa Japonica Group]
gi|222639822|gb|EEE67954.1| hypothetical protein OsJ_25853 [Oryza sativa Japonica Group]
Length = 799
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 256/539 (47%), Positives = 341/539 (63%), Gaps = 17/539 (3%)
Query: 279 GHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPR 338
G +L E +T+ E+ SL QK+RP F EL GQNVV +SL SA+ +G + YLFHGP
Sbjct: 133 GEQLGRREGATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPH 192
Query: 339 GTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSL 398
G GKTSA+RIFAA+LNC S +PCG C EC SG S V E+D+ +++ RV +L
Sbjct: 193 GIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAAL 252
Query: 399 MKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSAL 458
+++A P SS FK+ I+D+CQ + E W +V +SLE I +FVMIT ++DKLP +++
Sbjct: 253 LRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSV 312
Query: 459 SRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL 518
Q Y F K+ + +IA RL RIC+ E + F+ AL+ IA K+NGSIRDA +LDQL+LL
Sbjct: 313 GWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLL 372
Query: 519 GKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL 578
GK+I+ S+ Y+LIG VSD+ELLDLL+LA SSD + V RAREL+ SK+DP+QL++QLANL
Sbjct: 373 GKRISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANL 432
Query: 579 IMDILAGKCLEDCSEARKNFFGKHTS-EADMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
IMDILAG+ D E RK GKHTS E D+ KL AL+ILSETEKQL+ +K+Q+TWLT
Sbjct: 433 IMDILAGRHQSDSQEVRK-VTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTA 491
Query: 638 ALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPR--DSFKHLVRGSCVGDKANKLG 695
ALLQ + E L+D+ + + + D + D+ HL NK+G
Sbjct: 492 ALLQFNMREPYC-LDDAAVSSMFTESQTDDGAAILKDESLDTSSHLCY-------QNKIG 543
Query: 696 ALEDYKG---TLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYV 752
L+ G LE+IW A E C S L + LRK GKLSSL+ G+AVAEL+F H + V
Sbjct: 544 CLDMNLGDPDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHPEDV 603
Query: 753 SRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFSLFSCSRWVQQSRSTTERE 811
E W +LQ++L CNV+IR+ +P+S S S V QSR E E
Sbjct: 604 PTTESFWNPFVVSLQNLLKCNVDIRINLSPISTSNR--VVSKNSSVSLVMQSREDQETE 660
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWE 46
+EGRRHSVDIPISR L+A+ R RSLRDP TNS++KFSA WE
Sbjct: 2 IEGRRHSVDIPISRALLAVMRSRSLRDPETNSLAKFSA--KKTIWE 45
>gi|218200402|gb|EEC82829.1| hypothetical protein OsI_27632 [Oryza sativa Indica Group]
Length = 811
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 256/539 (47%), Positives = 341/539 (63%), Gaps = 17/539 (3%)
Query: 279 GHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPR 338
G +L E +T+ E+ SL QK+RP F EL GQNVV +SL SA+ +G + YLFHGP
Sbjct: 145 GEQLGRREGATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPH 204
Query: 339 GTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSL 398
G GKTSA+RIFAA+LNC S +PCG C EC SG S V E+D+ +++ RV +L
Sbjct: 205 GIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAAL 264
Query: 399 MKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSAL 458
+++A P SS FK+ I+D+CQ + E W +V +SLE I +FVMIT ++DKLP +++
Sbjct: 265 LRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSV 324
Query: 459 SRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL 518
Q Y F K+ + +IA RL RIC+ E + F+ AL+ IA K+NGSIRDA +LDQL+LL
Sbjct: 325 GWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLL 384
Query: 519 GKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL 578
GK+I+ S+ Y+LIG VSD+ELLDLL+LA SSD + V RAREL+ SK+DP+QL++QLANL
Sbjct: 385 GKRISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANL 444
Query: 579 IMDILAGKCLEDCSEARKNFFGKHTS-EADMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
IMDILAG+ D E RK GKHTS E D+ KL AL+ILSETEKQL+ +K+Q+TWLT
Sbjct: 445 IMDILAGRHQSDSQEVRK-VTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTA 503
Query: 638 ALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPR--DSFKHLVRGSCVGDKANKLG 695
ALLQ + E L+D+ + + + D + D+ HL NK+G
Sbjct: 504 ALLQFNMREPYC-LDDAAVSSMFTESQTDDGAAILKDESLDTSSHLCY-------QNKIG 555
Query: 696 ALEDYKG---TLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYV 752
L+ G LE+IW A E C S L + LRK GKLSSL+ G+AVAEL+F H + V
Sbjct: 556 CLDMNLGDPDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHPEDV 615
Query: 753 SRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFSLFSCSRWVQQSRSTTERE 811
E W +LQ++L CNV+IR+ +P+S S S V QSR E E
Sbjct: 616 PTTESFWNPFVVSLQNLLKCNVDIRINLSPISTSNR--VVSKNSSVSLVMQSREDQETE 672
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWE 46
+EGRRHSVDIPISR L+A+ R RSLRDP TNS++KFSA WE
Sbjct: 14 IEGRRHSVDIPISRALLAVMRSRSLRDPETNSLAKFSA--KKTIWE 57
>gi|108862500|gb|ABA97148.2| expressed protein [Oryza sativa Japonica Group]
Length = 544
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 260/564 (46%), Positives = 346/564 (61%), Gaps = 44/564 (7%)
Query: 445 MITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGS 504
MIT ++D LPR++++ QK+HFPKIK DI RL RIC+EE + FD L FI+AKSNGS
Sbjct: 1 MITSDIDSLPRTSITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFISAKSNGS 60
Query: 505 IRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRS 564
+RDAE++LDQLSLLGKKIT+SL +EL+G VSDDEL++LLDLALSSDT+NTV RARELM S
Sbjct: 61 LRDAEIMLDQLSLLGKKITISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMAS 120
Query: 565 KIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEK 623
IDP+QL+SQLANLIMDIL+G+C +E K+F G++ +E ++KL ALKILSETEK
Sbjct: 121 AIDPLQLVSQLANLIMDILSGRCQSAVTEVSKSFLGRYALAEVGIKKLRHALKILSETEK 180
Query: 624 QLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVR 683
QLR S++Q TW+TVALLQ ++ES+L A D +H I D + V
Sbjct: 181 QLRTSRNQATWVTVALLQFGTNESNL----------IAESNDMHAHSAIGYTDDWVSKVN 230
Query: 684 GS---CVGDKANKLGALEDY--KGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHG 738
S C +NK E + + LE+IW+ A CQS S K FLRK+G LSS+HV
Sbjct: 231 SSSNFCHACNSNKSNCSERHCRRLKLENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEE 290
Query: 739 LAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAP----VSAKENKPSFSL 794
LA+AE+ F H D++SRAEK LI STLQ+VLGCNVE++ P A+ + SFSL
Sbjct: 291 LAIAEVGFSHPDHISRAEKMQSLIESTLQNVLGCNVEVKFKLVPRPVRKDARSKRQSFSL 350
Query: 795 FSCSRWVQQSRSTTERETDSDYSDYFSEKPMIRARHTLTCSSDCGS-QMSHNCCHKTDVV 853
SCS Q+ +DS +D E +R T S S Q S +TD
Sbjct: 351 LSCSGRKQEL-------SDSAVTD---EDETVRHGARETPSKGYSSQQQSPFIMQRTDSK 400
Query: 854 RALRSSEGNVLSTGTVSFHRSIQDDISRSAGCEISSLNRNDYYCQVLSPQEPETQPSCFP 913
+ E + S T++ +RS+ DD++R+ E + + S QEP+ QP+CF
Sbjct: 401 PTVHGCEDDARS--TLTSNRSMTDDMTRTCRSETNYSKGVSEQGRFDSIQEPDLQPNCFS 458
Query: 914 RTLRLQKKLRASDTSEMVCTS----NKLALSIPKKTSFDTYISVDDPHVFYGSSNYHHS- 968
RTL+LQK+ +SD + +C NK+ +PKK FDTY +P+ SN H +
Sbjct: 459 RTLKLQKRFFSSDAAHTICLKIQPHNKMDF-LPKK-EFDTYFCAYEPYEQCSRSNSHATC 516
Query: 969 SVRDEDGPQEN----SDVLCWRTP 988
S RD++ +N S +LCWR P
Sbjct: 517 SSRDDNLWNKNSRFGSHLLCWRGP 540
>gi|297739441|emb|CBI29623.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/530 (43%), Positives = 323/530 (60%), Gaps = 45/530 (8%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP FFDEL+GQN+VV+SL++AISRG + YLF GPRGTGKTS +RIF AALNC
Sbjct: 320 SLSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNC 379
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFL--PPFSSRFKI 413
L++ + KPCG+CREC+ F SG+SR +E+D DR+ L+K+ P S +K+
Sbjct: 380 LAVGETKPCGICRECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYKV 439
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F+IDEC LL +TW L LE VVF+ ITP+L+ +PR+ LSR QKY F KIK+GD
Sbjct: 440 FVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGD 499
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I +RLR+I +E ++ + AL+ IA ++GS+RDAE +LDQLSLLGK+IT SL +L+G+
Sbjct: 500 IVARLRKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLLGKRITTSLVNDLVGV 559
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCS 592
VSD++LL+LL+LA+SSDT+ TV RARELM S +DP+ L+SQLA+LIMDI+AG + D
Sbjct: 560 VSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVDAQ 619
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL- 651
++ F G+ +EA+M +L ALK+LSE EKQLR+S ++TW T LLQL S L
Sbjct: 620 QSDSFFGGRSLTEAEMDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSPSPDPTLS 679
Query: 652 ------------NDSKLCLRYA---HDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGA 696
+D R A H + ++H PR SF + + G
Sbjct: 680 GSSRRQSSKTTEDDPSSASRDATIVHKQKPNAHHM--PRKSFSPISMPKSAEKNSTHQGD 737
Query: 697 LEDYKGT------------------------LESIWKTATELCQSNSLKTFLRKQGKLSS 732
L ++ + L+ IW+ E C S +L+ L GKL S
Sbjct: 738 LFQFRNSGASASSHDDVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKLVS 797
Query: 733 LHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAP 782
+ G VA + F D RAE+ I ++++ V+ NVE++++ P
Sbjct: 798 ISEAEGGLVAYVAFQDEDIKCRAERFLSSITNSIEIVMRSNVEVKIILLP 847
>gi|357139536|ref|XP_003571337.1| PREDICTED: uncharacterized protein LOC100827993 [Brachypodium
distachyon]
Length = 807
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 249/524 (47%), Positives = 337/524 (64%), Gaps = 22/524 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL QK+RP FF EL GQN V +SL SA+S+G + YLFHGP G GKTSA+RIFAA LNC
Sbjct: 143 SLLQKYRPRFFSELAGQNAVAQSLSSAVSQGKLAPIYLFHGPHGIGKTSAARIFAATLNC 202
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S +PCG C EC SG S V E+D+ +++ RV +L++SA P SS FK+ I
Sbjct: 203 HSPGGNQPCGNCDECVAIFSGISSSVVEIDASKLDCKARVAALLRSACEVPASSNFKVLI 262
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+D+CQ + E W ++ +SLE I +FVMIT ++DKLP ++ Q Y F K+ D +I
Sbjct: 263 VDDCQHMDKEGWYSIYSSLEGIPDSSIFVMITSDVDKLPSNSAGWCQSYRFCKVDDAEIV 322
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RL +IC +E + F+ AL+ +A K++GSIRDA +LDQL+LLGK+I+ S+ Y+LIG VS
Sbjct: 323 RRLSKICTKEGMEFEAEALELLARKASGSIRDAVQMLDQLTLLGKRISRSVTYDLIGDVS 382
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
D+ELLDLL+L++SSD + V RAREL+ SK+DP+QL++QLANLIMDILAGK D SE R
Sbjct: 383 DEELLDLLNLSMSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDILAGKHQSDSSEVR 442
Query: 596 KNFFGKHTS-EADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDS 654
K GK+TS + D+ +L AL+ILSETEKQL+ +K+Q+TWLT ALLQ + E
Sbjct: 443 K-VIGKNTSADVDVHRLRNALEILSETEKQLKTTKNQSTWLTAALLQFNMRE-------- 493
Query: 655 KLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKA-----NKLGALEDYKG---TLES 706
CL D S T S D +++ + + NK+G L+ G LE+
Sbjct: 494 PYCLETLDDTAVSSMFTESQTDDGAGVLKDESLETSSHLCYQNKMGCLDMNLGDPDVLET 553
Query: 707 IWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTL 766
IW A E C SNSL L+K GKLSSL+ G+AVAEL+F H + V +E W + +L
Sbjct: 554 IWMKALENCTSNSLHNLLQKDGKLSSLYTTQGVAVAELQFCHPEDVPTSETFWMPLVGSL 613
Query: 767 QSVLGCNVEIRLLCAPVS----AKENKPSFSLFSCSRWVQQSRS 806
Q++L CNV+IR+ +P+S A S SL SR Q++R+
Sbjct: 614 QNLLKCNVDIRINLSPISMSNRAGSKNSSVSLVMQSREDQETRN 657
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 34/38 (89%)
Query: 1 MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSA 38
+EGRRHSVDIPISR L+A+ R RSLRDP TNS++KFSA
Sbjct: 2 IEGRRHSVDIPISRALVAVMRSRSLRDPDTNSLAKFSA 39
>gi|302805609|ref|XP_002984555.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
gi|300147537|gb|EFJ14200.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
Length = 1241
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/541 (41%), Positives = 319/541 (58%), Gaps = 43/541 (7%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLS K+RP F ++VGQNVV++SL +A+ RG + S YLF GPRGTGK+SA+R+FAAALNC
Sbjct: 500 SLSYKYRPKTFRDMVGQNVVMQSLANAVLRGRIVSLYLFQGPRGTGKSSAARVFAAALNC 559
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LS E+ +PCGLCREC + G+S DV+E D+ R N V L++ A LPP S R+++ +
Sbjct: 560 LSSEELRPCGLCRECVALNLGKSLDVREFDASRFNGLGSVKELLEVAILPPSSGRYRLSV 619
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE L E+W L +E + + + ++IT ++LPR+ SR QKY F K+KD DI
Sbjct: 620 VDEVHTLTAESWNFFLKGMEELPGNSIVILITSNPEQLPRTLGSRCQKYPFTKLKDPDII 679
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
SRL+++ +E I+ + AL+ IA++SNGS+RDAEM LDQL LLG+ +TLS EL+G++
Sbjct: 680 SRLQKLATKENIDIEIEALELIASRSNGSLRDAEMTLDQLGLLGQVVTLSTLQELVGLLP 739
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
DD+L+DLLD ALS DT +TV R L+ S ++P+ L+SQLA LI D+LAG ++ +
Sbjct: 740 DDKLMDLLDFALSGDTVSTVKSVRNLLESGVEPLALMSQLATLITDMLAGSYKPVLTQRK 799
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES------- 647
+ FF K T S+ D+++L +ALKILSE EKQ+R S QTTWLT A+LQ + +
Sbjct: 800 RRFFHKITLSKEDLERLRQALKILSEAEKQVRASSDQTTWLTAAILQFAPDRAYIFPASS 859
Query: 648 -------SLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDK-----ANKL- 694
SL ND+ D + F++ V + V K ANK
Sbjct: 860 SGSSATQSLVGNDTSEKETIESDSGALKQGWEPEHEHFENPVDDTAVFAKPEVPWANKSL 919
Query: 695 -----GALEDYKGT----------------LESIWKTATELCQSNSLKTFLRKQGKLSSL 733
+ Y T L+ +W+ A + +S SLK LR GKL SL
Sbjct: 920 STVPEARIHPYVQTASTNDGHDTCAFDQKRLDDVWQKALKNSRSKSLKHLLR-HGKLISL 978
Query: 734 HVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFS 793
+ A E+EF H ++AEKS I+ QS LGC VE+++ A + +K S
Sbjct: 979 SMQEVQATVEIEFQHSKQKAKAEKSRSRISHAFQSSLGCPVEVQIKLASKLLEHDKKRVS 1038
Query: 794 L 794
L
Sbjct: 1039 L 1039
>gi|302797513|ref|XP_002980517.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
gi|300151523|gb|EFJ18168.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
Length = 1291
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/541 (41%), Positives = 318/541 (58%), Gaps = 43/541 (7%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLS K+RP F ++VGQNVV++SL +A+ RG + S YLF GPRGTGK+SA+R+FAAALNC
Sbjct: 500 SLSYKYRPKTFRDMVGQNVVMQSLANAVLRGRIVSLYLFQGPRGTGKSSAARVFAAALNC 559
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LS E+ +PCGLCREC + G+S DV+E D+ R N V L++ A LPP S R+++ +
Sbjct: 560 LSSEELRPCGLCRECVALNLGKSLDVREFDASRFNGLGSVKELLEVAILPPSSGRYRLSV 619
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE L E+W L +E + + + ++IT ++LPR+ SR QKY F K+KD DI
Sbjct: 620 VDEVHTLTAESWNFFLKGMEELPGNSIVILITSNPEQLPRTLGSRCQKYPFTKLKDPDII 679
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
SRL+++ +E I+ + AL+ IA++SNGS+RDAEM LDQL LLG+ +TLS EL+G++
Sbjct: 680 SRLQKLATKENIDIEIEALELIASRSNGSLRDAEMTLDQLGLLGQVVTLSTLQELVGLLP 739
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
DD+L+DLLD ALS DT +TV R L+ S ++P+ L+SQLA LI D+LAG ++ +
Sbjct: 740 DDKLMDLLDFALSGDTVSTVKSVRNLLESGVEPLALMSQLATLITDMLAGSYKPVLTQRK 799
Query: 596 KNFFGK-HTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES------- 647
+ FF K S+ D+++L +ALKILSE EKQ+R S QTTWLT A+LQ + +
Sbjct: 800 RRFFHKIALSKEDLERLRQALKILSEAEKQVRASSDQTTWLTAAILQFAPDRAYIFPASS 859
Query: 648 -------SLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDK-----ANKL- 694
SL ND+ D + F++ V + V K ANK
Sbjct: 860 SGSSATQSLVGNDTSEKETIESDSGALKQGWEPEHEHFENPVDDTAVFAKPEVPWANKSL 919
Query: 695 -----GALEDYKGT----------------LESIWKTATELCQSNSLKTFLRKQGKLSSL 733
+ Y T L+ +W+ A + +S SLK LR GKL SL
Sbjct: 920 STVPEARIHPYVQTASTNDGHDTCAFDQKRLDDVWQKALKNSRSKSLKHLLR-HGKLISL 978
Query: 734 HVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFS 793
+ A E+EF H ++AEKS I+ QS LGC VE+++ A + +K S
Sbjct: 979 SMQEVQATVEIEFQHSKQKAKAEKSRSRISHAFQSSLGCPVEVQIKLASKLLEHDKKRVS 1038
Query: 794 L 794
L
Sbjct: 1039 L 1039
>gi|326528909|dbj|BAJ97476.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1174
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 223/538 (41%), Positives = 323/538 (60%), Gaps = 58/538 (10%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP + E+VGQN VV+SL +AI R + YLFHGPRGTGKTSA+RIF+AAL+C
Sbjct: 407 SLSQKYRPRSYHEIVGQNFVVQSLSNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSC 466
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + KPCG+C EC F SG ++ EVD+ +R+ L+++ SSR+K+F+
Sbjct: 467 TANGENKPCGVCMECNDFFSGNGINLIEVDASNKKGINRIRHLIENIPASATSSRYKVFV 526
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DEC ++ + W+ + L+ HVVF+ IT + + LPR+ +SR QKY F KIKD DI
Sbjct: 527 VDECHMVSSKVWSAFMKFLDEPLPHVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIV 586
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RLR+I V+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+G+VS
Sbjct: 587 CRLRKIAVKETLDIELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVS 646
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LED--CS 592
++ LLDLL++A+SSDT+ TV R+RELM S +DPM L+SQLA LIMDI+AG L D C
Sbjct: 647 EENLLDLLEIAMSSDTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCG 706
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL---------- 642
E G++ ++A++++L +ALKILS+ EKQ+R+S ++TW T ALLQL
Sbjct: 707 EG---IGGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHDSEITH 763
Query: 643 ---SSSESSLDLNDSKL-CLRYAHDKDGDSHCTISPRDSFK------------------- 679
SS +S+ +++ L +R + SH + R S K
Sbjct: 764 SRSSSKQSAKATSETMLEAVRESSASRSVSHPLFTIRGSRKTLDHRTASGRSSPNDLASL 823
Query: 680 --------HLVRGSC------VGDKANKLGALE-----DYKGTLESIWKTATELCQSNSL 720
+L+ G C + D A + E + L IW+ + C S +L
Sbjct: 824 SSRMRPSDNLIYGDCRSVDRVLLDSAQASNSTEQKPIINGSSDLIQIWRKCIDNCHSKTL 883
Query: 721 KTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRL 778
+ L GKL+S+ G VA + F +SRA++ I +++++ L CNVE+R+
Sbjct: 884 QQLLSDHGKLASIKEFEGYLVAFISFEDSKIMSRAQRFVSSIRNSMETALRCNVEVRV 941
>gi|326498857|dbj|BAK02414.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1174
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 223/538 (41%), Positives = 323/538 (60%), Gaps = 58/538 (10%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP + E+VGQN VV+SL +AI R + YLFHGPRGTGKTSA+RIF+AAL+C
Sbjct: 407 SLSQKYRPRSYHEIVGQNFVVQSLSNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSC 466
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + KPCG+C EC F SG ++ EVD+ +R+ L+++ SSR+K+F+
Sbjct: 467 TANGENKPCGVCMECNDFFSGNGINLIEVDASNKKGINRIRHLIENIPASATSSRYKVFV 526
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DEC ++ + W+ + L+ HVVF+ IT + + LPR+ +SR QKY F KIKD DI
Sbjct: 527 VDECHMVSSKVWSAFMKFLDEPLPHVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIV 586
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RLR+I V+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+G+VS
Sbjct: 587 CRLRKIAVKETLDIELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVS 646
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LED--CS 592
++ LLDLL++A+SSDT+ TV R+RELM S +DPM L+SQLA LIMDI+AG L D C
Sbjct: 647 EENLLDLLEIAMSSDTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCG 706
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL---------- 642
E G++ ++A++++L +ALKILS+ EKQ+R+S ++TW T ALLQL
Sbjct: 707 EG---IGGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHDSEITH 763
Query: 643 ---SSSESSLDLNDSKL-CLRYAHDKDGDSHCTISPRDSFK------------------- 679
SS +S+ +++ L +R + SH + R S K
Sbjct: 764 SRSSSKQSAKATSETMLEAVRESSASRSVSHPLFTIRGSRKTLDHRTASGRSSPNDLASL 823
Query: 680 --------HLVRGSC------VGDKANKLGALE-----DYKGTLESIWKTATELCQSNSL 720
+L+ G C + D A + E + L IW+ + C S +L
Sbjct: 824 SSRMRPSDNLIYGDCRSVDRVLLDSAQASNSTEQKPIINGSSDLIQIWRKCIDNCHSKTL 883
Query: 721 KTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRL 778
+ L GKL+S+ G VA + F +SRA++ I +++++ L CNVE+R+
Sbjct: 884 QQLLSDHGKLASIKEFEGYLVAFISFEDSKIMSRAQRFVSSIRNSMETALRCNVEVRV 941
>gi|359486198|ref|XP_002268959.2| PREDICTED: uncharacterized protein LOC100242129 [Vitis vinifera]
Length = 1274
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/352 (55%), Positives = 260/352 (73%), Gaps = 3/352 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP FFDEL+GQN+VV+SL++AISRG + YLF GPRGTGKTS +RIF AALNC
Sbjct: 446 SLSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNC 505
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFL--PPFSSRFKI 413
L++ + KPCG+CREC+ F SG+SR +E+D DR+ L+K+ P S +K+
Sbjct: 506 LAVGETKPCGICRECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYKV 565
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F+IDEC LL +TW L LE VVF+ ITP+L+ +PR+ LSR QKY F KIK+GD
Sbjct: 566 FVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGD 625
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I +RLR+I +E ++ + AL+ IA ++GS+RDAE +LDQLSLLGK+IT SL +L+G+
Sbjct: 626 IVARLRKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLLGKRITTSLVNDLVGV 685
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCS 592
VSD++LL+LL+LA+SSDT+ TV RARELM S +DP+ L+SQLA+LIMDI+AG + D
Sbjct: 686 VSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVDAQ 745
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
++ F G+ +EA+M +L ALK+LSE EKQLR+S ++TW T LLQL S
Sbjct: 746 QSDSFFGGRSLTEAEMDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGS 797
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L+ IW+ E C S +L+ L GKL S+ G VA + F D RAE+ I
Sbjct: 910 LDDIWERCIERCHSKTLRQLLHAHGKLVSISEAEGGLVAYVAFQDEDIKCRAERFLSSIT 969
Query: 764 STLQSVLGCNVEIRLLCAP 782
++++ V+ NVE++++ P
Sbjct: 970 NSIEIVMRSNVEVKIILLP 988
>gi|413916697|gb|AFW56629.1| hypothetical protein ZEAMMB73_394019 [Zea mays]
Length = 1174
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 220/543 (40%), Positives = 315/543 (58%), Gaps = 61/543 (11%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
P SLSQK+RP F E+V QN+ V+SL +AI+R + YLF GPRGTGKTS +RIF+AAL
Sbjct: 415 PRSLSQKYRPRAFPEIVSQNIAVQSLSNAITRERIAPAYLFQGPRGTGKTSTARIFSAAL 474
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS--SRF 411
NCL+ D KPCG+C C F SG++ ++KEVD+ + L+++ LPP + SR+
Sbjct: 475 NCLTTGDNKPCGVCNHCTDFFSGKASNIKEVDASNRKSIGIIKHLLEN--LPPSAPLSRY 532
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+F++DEC ++ + W+ + L+ +VVF+ IT + + +PR+ +SR QKY F KIKD
Sbjct: 533 KVFVVDECHMIPSKLWSAFMKFLDEPFPYVVFIFITIDPNNVPRAVVSRCQKYVFSKIKD 592
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
D RLR+ICV+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+
Sbjct: 593 IDTVCRLRKICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLV 652
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LED 590
G+VS+++LLDLL++A+S DT+ TV R+RELM S DPM L+SQLA LIMDI+AG L D
Sbjct: 653 GVVSEEKLLDLLEIAMSGDTAETVKRSRELMDSGTDPMALMSQLAGLIMDIIAGTYKLAD 712
Query: 591 CSEARKNFF-GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + G+ +EA++++L +ALKILS+ EKQ+ +S + TW T ALLQL SS
Sbjct: 713 VACCNGSAVGGRSLTEAELERLQQALKILSDAEKQISLSSERPTWFTAALLQLGCGHSS- 771
Query: 650 DLNDSKLCLRYAHDKDGDSHCTISPRDS---FKH-------------------------- 680
D+N K + H D+ I+ S F H
Sbjct: 772 DVNQQKGSTQEHHKVANDAMSEIARESSSRTFSHSLSAFGISKRTLDSKTISVHSSPQVL 831
Query: 681 ------------LVRGSCV-------------GDKANKLGALEDYKGTLESIWKTATELC 715
LV G C G+ + + + +L +W E C
Sbjct: 832 ASHSSRLRLNDNLVYGECRSVDRVPLNSNQLNGNCSQQRALVNGISDSLAQVWIRCIENC 891
Query: 716 QSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVE 775
S +L+ L GKL S+ G A A + SRA++ I ++L++VL CNVE
Sbjct: 892 HSKTLQHLLLDHGKLVSIRQFEGHATAFIAIEDCGIKSRAQRFLSSITNSLETVLKCNVE 951
Query: 776 IRL 778
+++
Sbjct: 952 VKI 954
>gi|297849856|ref|XP_002892809.1| hypothetical protein ARALYDRAFT_888824 [Arabidopsis lyrata subsp.
lyrata]
gi|297338651|gb|EFH69068.1| hypothetical protein ARALYDRAFT_888824 [Arabidopsis lyrata subsp.
lyrata]
Length = 1130
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 229/532 (43%), Positives = 329/532 (61%), Gaps = 49/532 (9%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
E+ SLSQK++P FFDEL+GQ++VV+SL+SA+ +G + YLF GPRGTGKTS +RI +A
Sbjct: 433 ESIQSLSQKYKPMFFDELIGQSIVVQSLMSAVKKGRIAHVYLFQGPRGTGKTSTARILSA 492
Query: 352 ALNC-LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS--AFLPPFS 408
ALNC + E+ KPCG C+EC+ + G+SRD+ E+D+ + N +++V L+K P S
Sbjct: 493 ALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSS 552
Query: 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468
R+K+F+IDEC LL TW ++L LEN Q VVF+ IT +LD +PR+ SR QKY F K
Sbjct: 553 PRYKVFVIDECHLLPSMTWLSLLKFLENPLQKVVFICITTDLDNVPRTIQSRCQKYLFNK 612
Query: 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAY 528
++DGDI RLR+I ++E ++ + ALD IA ++GS+RDAE +L+QLSL+GK+IT+ L
Sbjct: 613 VRDGDIVVRLRKIALDENLDVESQALDLIALNADGSLRDAETMLEQLSLMGKRITVDLVN 672
Query: 529 ELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAG--K 586
EL+G+VSDD+LL+LL+LALSSDT+ TV +AREL+ DP+ ++SQLA+LIMDI+AG K
Sbjct: 673 ELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPVLMMSQLASLIMDIIAGAYK 732
Query: 587 CL-EDCSEA---RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
L E SEA R+N +EAD+++L ALK+LSE EKQLR+S ++TW LLQL
Sbjct: 733 ALDEKYSEAFLDRRNL-----TEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQL 787
Query: 643 SS---------------SESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFK-----HLV 682
S S + D + S+ + Y + SP K H V
Sbjct: 788 GSVPSPGTTHTGSSRRQSSRATDESISREVIAYKQRSGLQCSNSASPTSMRKSGNLVHEV 847
Query: 683 RGSC----VGDKANKLGALEDYKGT-----------LESIWKTATELCQSNSLKTFLRKQ 727
+ S V + + + +D + L IW + C S +LK L
Sbjct: 848 KLSSSSREVLESETSIASHDDTTTSSMTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAH 907
Query: 728 GKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLL 779
GKL S+ G+ VA + F R+ +RAE+ I ++++ VL NVE+R++
Sbjct: 908 GKLLSISEVEGILVAYIAFGEREIKARAERFVSSITNSIEMVLRRNVEVRII 959
>gi|62733734|gb|AAX95843.1| hypothetical protein LOC_Os11g13990 [Oryza sativa Japonica Group]
gi|77549593|gb|ABA92390.1| ATPase, AAA family protein [Oryza sativa Japonica Group]
Length = 1121
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 214/512 (41%), Positives = 320/512 (62%), Gaps = 27/512 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP F+ELVGQ+ VV+SL +AI R + YLFHGPRGTGKTSA+RIF+AAL+C
Sbjct: 336 SLSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSC 395
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+++ + KPCG C EC F +G ++ EVD+ +R+ L+++ SSR+K+F+
Sbjct: 396 VAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLIENIPASATSSRYKVFV 455
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DEC ++ + W+ + L+ VVF+ IT + + LPR+ +SR QKY F KIKD DI
Sbjct: 456 VDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIV 515
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RLR+I V+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+G+VS
Sbjct: 516 CRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVS 575
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCSEA 594
+++LLDLL++A+S+DT+ TV R+RELM S +DPM L+SQLA LIMDI+AG L D +
Sbjct: 576 EEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCG 635
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLND- 653
+ G++ ++A++++L +ALKILS+ EKQ+R+S ++TW T ALLQL S +S +
Sbjct: 636 GEGIGGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHNSEMIQSR 695
Query: 654 ----------SKLCLRYAHDKDGD---SHCTISPRDSFKHLVRGSCVGDKA--------N 692
S++ + + +H + R S K L + G + +
Sbjct: 696 SSSKQSAKATSEIVMDAVRESSASRTTAHPLFTLRGSRKTLDLRTASGHSSPQGVVSVSS 755
Query: 693 KLGALEDYK-GTLESIWKTATELCQ-SNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRD 750
++ A ++ K G S+ + + Q SNS + LR N G +A + F D
Sbjct: 756 RMRANDNLKHGECRSVDRVLQDSAQRSNS--SELRPMTNDGVQTFNEGYYIAFIAFEGSD 813
Query: 751 YVSRAEKSWKLIASTLQSVLGCNVEIRLLCAP 782
SRA++ I +++++VL CNVE+R+ P
Sbjct: 814 IKSRAQRFTSSIRNSMETVLRCNVEVRIGLMP 845
>gi|7262689|gb|AAF43947.1|AC012188_24 Contains similarity to DNA Pol III Gamma and Tau from Chlamydia
trachomatis gb|AE001306.1 and contains an AAA (ATPase)
PF|00004 domain [Arabidopsis thaliana]
Length = 1071
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 236/582 (40%), Positives = 343/582 (58%), Gaps = 60/582 (10%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
E+ SLSQK++P FFDEL+GQ++VV+SL++A+ +G V YLF GPRGTGKTS +RI +A
Sbjct: 419 ESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSA 478
Query: 352 ALNC-LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS--AFLPPFS 408
ALNC + E+ KPCG C+EC+ + G+SRD+ E+D+ + N +++V L+K P S
Sbjct: 479 ALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSS 538
Query: 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468
R+K+F+IDEC LL TW ++L LEN Q VFV IT +LD +PR+ SR QKY F K
Sbjct: 539 QRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNK 598
Query: 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAY 528
++DGDI RLR+I +E ++ + ALD IA ++GS+RDAE +L+QLSL+GK+IT+ L
Sbjct: 599 VRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLMGKRITVDLVN 658
Query: 529 ELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAG--K 586
EL+G+VSDD+LL+LL+LALSSDT+ TV +AREL+ DP+ ++SQLA+LIMDI+AG K
Sbjct: 659 ELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGAYK 718
Query: 587 CL-EDCSEA---RKN--FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL 640
L E SEA R+N + +EAD+++L ALK+LSE EKQLR+S ++TW LL
Sbjct: 719 ALDEKYSEAFLDRRNCEYLKLQMTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLL 778
Query: 641 QLSS---------------SESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFK--HLVR 683
QL S S + + + S+ + Y T SP K +LVR
Sbjct: 779 QLGSMPSPGTTHTGSSRRQSSRATEESISREVIAYKQRSGLQCSNTASPTSIRKSGNLVR 838
Query: 684 GSCVGDKA-------NKLGALEDYKGT-----------LESIWKTATELCQSNSLKTFLR 725
+ + + + +D + L IW + C S +LK L
Sbjct: 839 EVKLSSSSSEVLESDTSMASHDDTTASTMTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLY 898
Query: 726 KQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSA 785
GKL S+ G+ VA + F + +RAE+ I ++++ VL NVE+R++
Sbjct: 899 AHGKLLSISEVEGILVAYIAFGEGEIKARAERFVSSITNSIEMVLRRNVEVRII------ 952
Query: 786 KENKPSFSLFSCSRWVQQSRSTTERETDSDYSDYFSEKPMIR 827
L S + + ++ T S Y++ +E PM R
Sbjct: 953 --------LLSETELLNSKQTRQIAVTTSSYTESGNEIPMKR 986
>gi|255556667|ref|XP_002519367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223541434|gb|EEF42984.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 1270
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/355 (54%), Positives = 260/355 (73%), Gaps = 3/355 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK++P FF E++GQN+VV+SL++AISRG + YLF GPRGTGKTS +RIFA+ALNC
Sbjct: 454 SLSQKYKPLFFGEVIGQNIVVQSLINAISRGRIAPVYLFQGPRGTGKTSTARIFASALNC 513
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK--SAFLPPFSSRFKI 413
+S E+ KPCG CR+C+ F SG++RD+ EVD D+V L+K S + P SSR+K+
Sbjct: 514 ISTEETKPCGYCRDCSDFISGKARDLWEVDGTNKKGIDKVRHLLKKVSQWPPTGSSRYKV 573
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F+IDEC LL + W L LE Q VVF+ IT + D +PR+ SR QKY F KIKDGD
Sbjct: 574 FLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFITTDPDNVPRTVQSRCQKYLFNKIKDGD 633
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I +RLR++ EE ++ + ALD IA ++GS+RDAE +LDQLSLLGK+IT SL EL+G+
Sbjct: 634 IVARLRKVSSEENLDVELDALDLIALNADGSLRDAETMLDQLSLLGKRITTSLVNELVGV 693
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-CLEDCS 592
V D++LL+LL+L++SSDT+ TV RAR+L+ S +DP+ L+SQLA+LIMDI+AG + D
Sbjct: 694 VPDEKLLELLELSMSSDTAETVKRARDLLHSGVDPLVLMSQLASLIMDIIAGTHNVADAK 753
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+ F G+ +EA++++L ALK+LSE EKQLR+S ++TW T LLQL S S
Sbjct: 754 YSISLFGGRSLTEAELERLKHALKLLSEAEKQLRVSSDRSTWFTATLLQLGSVPS 808
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L+ IW+ C SN+L+ L GKL SL G V + F D +RAE+ I
Sbjct: 911 LDRIWEKCIANCHSNTLRQLLHTHGKLFSLSEVEGALVVYVAFGDEDIKARAERFMSSIT 970
Query: 764 STLQSVLGCNVEIRLLCAP 782
++++ VL CNVE+R++ P
Sbjct: 971 NSIEMVLRCNVEVRIIFVP 989
>gi|30683811|ref|NP_172898.2| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332191046|gb|AEE29167.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 1116
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 236/580 (40%), Positives = 342/580 (58%), Gaps = 63/580 (10%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
E+ SLSQK++P FFDEL+GQ++VV+SL++A+ +G V YLF GPRGTGKTS +RI +A
Sbjct: 419 ESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSA 478
Query: 352 ALNC-LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS--AFLPPFS 408
ALNC + E+ KPCG C+EC+ + G+SRD+ E+D+ + N +++V L+K P S
Sbjct: 479 ALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSS 538
Query: 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468
R+K+F+IDEC LL TW ++L LEN Q VFV IT +LD +PR+ SR QKY F K
Sbjct: 539 QRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNK 598
Query: 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAY 528
++DGDI RLR+I +E ++ + ALD IA ++GS+RDAE +L+QLSL+GK+IT+ L
Sbjct: 599 VRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLMGKRITVDLVN 658
Query: 529 ELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAG--K 586
EL+G+VSDD+LL+LL+LALSSDT+ TV +AREL+ DP+ ++SQLA+LIMDI+AG K
Sbjct: 659 ELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGAYK 718
Query: 587 CL-EDCSEA---RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
L E SEA R+N +EAD+++L ALK+LSE EKQLR+S ++TW LLQL
Sbjct: 719 ALDEKYSEAFLDRRNL-----TEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQL 773
Query: 643 SS---------------SESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFK--HLVRGS 685
S S + + + S+ + Y T SP K +LVR
Sbjct: 774 GSMPSPGTTHTGSSRRQSSRATEESISREVIAYKQRSGLQCSNTASPTSIRKSGNLVREV 833
Query: 686 CVGDKA-------NKLGALEDYKGT-----------LESIWKTATELCQSNSLKTFLRKQ 727
+ + + + +D + L IW + C S +LK L
Sbjct: 834 KLSSSSSEVLESDTSMASHDDTTASTMTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAH 893
Query: 728 GKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKE 787
GKL S+ G+ VA + F + +RAE+ I ++++ VL NVE+R++
Sbjct: 894 GKLLSISEVEGILVAYIAFGEGEIKARAERFVSSITNSIEMVLRRNVEVRII-------- 945
Query: 788 NKPSFSLFSCSRWVQQSRSTTERETDSDYSDYFSEKPMIR 827
L S + + ++ T S Y++ +E PM R
Sbjct: 946 ------LLSETELLNSKQTRQIAVTTSSYTESGNEIPMKR 979
>gi|224129822|ref|XP_002328811.1| predicted protein [Populus trichocarpa]
gi|222839109|gb|EEE77460.1| predicted protein [Populus trichocarpa]
Length = 1197
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 197/359 (54%), Positives = 261/359 (72%), Gaps = 4/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK++P FF EL+GQN+VV+SL +AISRG + YLF GPRG GKTSA+RIFA+ALNC
Sbjct: 476 SLSQKYKPVFFSELIGQNIVVQSLTNAISRGRIAPVYLFQGPRGIGKTSAARIFASALNC 535
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS-AFLPPF-SSRFKI 413
S E+ KPCG CREC+ SG++RD+ EVD D+V L+K + PP SS +K+
Sbjct: 536 TSAEEIKPCGYCRECSDSISGKTRDLWEVDGTDKKGIDKVRYLLKKISHRPPLGSSHYKV 595
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F+IDEC LL + W L LE Q VVF+ +T + D +PR+ SR QKY F KIKDGD
Sbjct: 596 FLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFNKIKDGD 655
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I +RLR+I EE ++ + ALD I+ ++GS+RDAE +LDQLSLLGKKIT SL EL+G+
Sbjct: 656 IVARLRKISKEENLDVELGALDLISLNADGSLRDAETMLDQLSLLGKKITTSLVNELVGV 715
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
VSD++LL+LL+LA+SSDT+ TV RAR+LM S +DPM L+SQLA+LIMDI+AG ++
Sbjct: 716 VSDEKLLELLELAMSSDTAETVKRARDLMDSGVDPMVLMSQLASLIMDIIAGTYNVVDAK 775
Query: 594 ARKNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
+ FG H +EA++++L AL++LSE EKQLR+S ++TW T LLQL S+ S+DL
Sbjct: 776 HGDSLFGTHNLTEAELERLKHALRLLSEAEKQLRISSDRSTWFTATLLQLGST-PSMDL 833
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L+ IW+ E C S +L+ L GKL S+ G + F +D +RAE+ I
Sbjct: 933 LDDIWEKCIEKCHSQTLRQLLHAHGKLLSISEVDGALAVYVAFEDQDIKARAERFLSSIT 992
Query: 764 STLQSVLGCNVEIRLL 779
++++ VL NVE+R++
Sbjct: 993 NSIEIVLRRNVEVRII 1008
>gi|356520145|ref|XP_003528725.1| PREDICTED: uncharacterized protein LOC100814391 [Glycine max]
Length = 1237
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 205/397 (51%), Positives = 268/397 (67%), Gaps = 7/397 (1%)
Query: 258 DLEDNPLLSGEIGETAHYGRSGHKLIN-NEISTYSETP---WSLSQKFRPNFFDELVGQN 313
DLE L G ++ + G +++ N Y TP S SQK+RP FF EL+GQN
Sbjct: 412 DLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYDGTPENNRSFSQKYRPMFFGELIGQN 471
Query: 314 VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373
VVV+SL+SA+SRG + YLF GPRGTGKTS +RIFAAALNC S + KPCG CREC F
Sbjct: 472 VVVQSLISAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPNESKPCGYCRECVDF 531
Query: 374 SSGRSRDVKEVDSVRINRSDRVGSLMK--SAFLPPFSSRFKIFIIDECQLLHGETWATVL 431
SG+S D+ EVD D+ L+K S S ++ IF+IDEC LL +TW L
Sbjct: 532 ISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTIFVIDECHLLPSKTWLGFL 591
Query: 432 NSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQ 491
LE Q VVF+ IT +LD +PR+ SR QKY F KIKDGDI +RLR+I +E ++ +
Sbjct: 592 KFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEA 651
Query: 492 AALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDT 551
ALD IA ++GS+RDAE +L+QLSLLGK+IT SL EL+G+VSD++LL+LL+LA+SSDT
Sbjct: 652 DALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDT 711
Query: 552 SNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQK 610
TV RARELM S +DPM L+SQLA LIMDI+AG ++ +FFG + +++++++
Sbjct: 712 VETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNQSELER 771
Query: 611 LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L ALK+LSE EKQLR S ++TW T LLQL S+ S
Sbjct: 772 LKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPS 808
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%)
Query: 702 GTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKL 761
G L IW E C S +L+ L GKL S+ G+ VA + F D R E+ +
Sbjct: 914 GKLCDIWVHCIERCHSKTLRQLLHNHGKLVSVCEVEGVLVAYVAFGDADIKVRVERFLRS 973
Query: 762 IASTLQSVLGCNVEIRLLCAPVSAKENK 789
I ++++ VL NVE+R++ P EN+
Sbjct: 974 ITNSMEMVLRRNVEVRIIHLPDGEGENQ 1001
>gi|395399800|gb|AFN58239.1| trichome branching-like protein [Gossypium arboreum]
Length = 1223
Score = 369 bits (946), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 193/353 (54%), Positives = 257/353 (72%), Gaps = 4/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK++P FFDEL+GQN+VV+SL++A+S+G + FYLF GPRGTGKTS +RIF+AALNC
Sbjct: 461 SLSQKYKPMFFDELIGQNIVVQSLMNAVSKGRIAPFYLFQGPRGTGKTSTARIFSAALNC 520
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK--SAFLPPFSSRFKI 413
+ +D KPCG C EC F+SG+ R+ E DS DRV L+K S L SSR+K+
Sbjct: 521 QTTDDDKPCGCCTECTEFTSGKRREFWEFDSTNRRGIDRVRYLLKSLSTGLASSSSRYKV 580
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F+IDEC LL + W +L LE+ +VF+ IT +LD +PR+ SR QKY F KIKD D
Sbjct: 581 FVIDECHLLPSKIWLALLKFLEDPPPRLVFIFITTDLDNVPRTVQSRCQKYLFNKIKDCD 640
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL-IG 532
I +RLR++ +E + + ALD IA ++GS+RDAE +LDQLSLLGK+IT SL EL +G
Sbjct: 641 IMARLRKMSADENLEVESDALDLIALNADGSLRDAETMLDQLSLLGKRITASLVNELVVG 700
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDC 591
+VSD++LL+LL+LA+SSDT+ TV RARELM S +DPM L+SQLA+LIMDI+AG + D
Sbjct: 701 VVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYNIVDS 760
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ F G+ +EA++++L ALK+LSE EKQLR+S ++TW T LLQL S
Sbjct: 761 KYSHSFFGGRAVTEAEVERLKDALKLLSEAEKQLRVSSERSTWFTATLLQLGS 813
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L+ IW C S +L+ L GKL SL + G+ +A L F D SRAE+ I
Sbjct: 925 LDDIWAKCINKCHSKTLRQLLLAHGKLLSLAEDEGVLIAYLAFADGDIKSRAERFLSSIT 984
Query: 764 STLQSVLGCNVEIR-LLCAPV-----SAKENKPSFS 793
++++ V+ NVE++ +L A V S K +K SFS
Sbjct: 985 NSMEIVMRRNVEVQIILLADVDLHQESRKVSKGSFS 1020
>gi|224070732|ref|XP_002303217.1| predicted protein [Populus trichocarpa]
gi|222840649|gb|EEE78196.1| predicted protein [Populus trichocarpa]
Length = 1241
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 198/359 (55%), Positives = 263/359 (73%), Gaps = 4/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK++P FF EL+GQN+VV+SL++AISRG + YLF GPRGTGKTSA+RIFA+ALNC
Sbjct: 469 SLSQKYKPAFFSELIGQNIVVQSLINAISRGRIARVYLFQGPRGTGKTSAARIFASALNC 528
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS-AFLPPF-SSRFKI 413
+S E+ KPCG CREC SSG++RD+ EVD D+V L+K + PP SSR+K+
Sbjct: 529 MSTEEIKPCGCCRECNDSSSGKTRDLWEVDGTDKKGIDKVRYLLKKISRGPPLGSSRYKV 588
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F+IDEC LL + W L LE Q VVF+ +T + D +PR+ SR QKY F KIKD D
Sbjct: 589 FLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFSKIKDRD 648
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I +RLR+I EE ++ + ALD IA ++GS+RDAE +LDQLSLLGKKIT SL EL+G
Sbjct: 649 IVARLRKISNEENLDVELNALDLIALNADGSLRDAETMLDQLSLLGKKITTSLVNELVGD 708
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
VSD++LL+LL+LA+SS+T+ TV RAR+LM S IDPM L+SQLA+LIMDI+AG ++
Sbjct: 709 VSDEKLLELLELAMSSETAETVKRARDLMDSGIDPMVLMSQLASLIMDIIAGTYNVVYAK 768
Query: 594 ARKNFFG-KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
+ G ++ +EA++++L AL++LSE EKQLR+S ++TW T LLQL S+ S+DL
Sbjct: 769 HGDSLIGTQNLTEAELERLKHALRLLSEAEKQLRISSDRSTWFTATLLQLGST-PSMDL 826
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L+ IW+ E C S +L+ L GKL S+ G + F D +RAE+ I
Sbjct: 917 LDDIWEKCIEKCHSQTLRQLLHAHGKLLSISEVDGALAVYVAFEDEDIKARAERFLSSIT 976
Query: 764 STLQSVLGCNVEIRLL 779
++++ VL CNVE+R++
Sbjct: 977 NSIEIVLRCNVEVRIV 992
>gi|115487814|ref|NP_001066394.1| Os12g0209300 [Oryza sativa Japonica Group]
gi|77553354|gb|ABA96150.1| ATPase, AAA family protein, expressed [Oryza sativa Japonica Group]
gi|113648901|dbj|BAF29413.1| Os12g0209300 [Oryza sativa Japonica Group]
gi|125578827|gb|EAZ19973.1| hypothetical protein OsJ_35564 [Oryza sativa Japonica Group]
Length = 1174
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 184/356 (51%), Positives = 256/356 (71%), Gaps = 5/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP F E+VGQ++V +SL +AI+R + YLF GPRGTGKTS +RIF+ L+C
Sbjct: 401 SLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLSC 460
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPP--FSSRFKI 413
L+ + KPCG+C+EC F SG ++ EVD+ +R+ +L+++ +PP SSR+K+
Sbjct: 461 LAPGENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLEN--IPPSATSSRYKL 518
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F++DEC ++ + W+ + L+ VVFV IT + D LPR+ +SR QKY F KIKD D
Sbjct: 519 FVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDID 578
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I RLRRICV+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+G+
Sbjct: 579 IVCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGV 638
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCS 592
VS+++LLDLL++A+SSDT+ TV R+RELM S IDPM L+SQLA LIMDI+AG L D +
Sbjct: 639 VSEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKLADST 698
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
G+ ++ ++++L +ALKILS+ EKQ+R+S ++TW T ALLQLS SS
Sbjct: 699 ANDMAVGGRSLTDGELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLSCGHSS 754
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 702 GTLES---IWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKS 758
G LES IW E C S +L+ L GKL + G +A + F SRAE+
Sbjct: 859 GNLESLAHIWMRCIENCHSKTLQQLLFDHGKLVCVRQCEGCVLAFIAFEDSSIRSRAERF 918
Query: 759 WKLIASTLQSVLGCNVEIRLLCAP 782
I +++++VL C VE+R+ P
Sbjct: 919 LSSITNSIETVLRCTVEVRMGLLP 942
>gi|356564432|ref|XP_003550458.1| PREDICTED: uncharacterized protein LOC100791561 [Glycine max]
Length = 1236
Score = 362 bits (930), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 203/397 (51%), Positives = 268/397 (67%), Gaps = 7/397 (1%)
Query: 258 DLEDNPLLSGEIGETAHYGRSGHKLIN-NEISTYSETP---WSLSQKFRPNFFDELVGQN 313
DLE L G ++ + G +++ N Y TP S SQK+RP FF EL GQN
Sbjct: 409 DLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYESTPENNRSFSQKYRPMFFGELFGQN 468
Query: 314 VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373
+VV+SL++A+SRG + YLF GPRGTGKTS +RIFAAALNC S ++ KPCG CREC F
Sbjct: 469 IVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDESKPCGYCRECVDF 528
Query: 374 SSGRSRDVKEVDSVRINRSDRVGSLMK--SAFLPPFSSRFKIFIIDECQLLHGETWATVL 431
SG+S D+ EVD D+ L+K S+ S ++ IF+IDEC LL +TW L
Sbjct: 529 ISGKSSDLLEVDGTNKRGIDKARYLLKRLSSGSSSASPQYTIFVIDECHLLPSKTWLGFL 588
Query: 432 NSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQ 491
LE VVF+ IT +LD +PR+ SR QKY F KIKDGDI +RLR+I +E ++ +
Sbjct: 589 KFLEEPPLRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEA 648
Query: 492 AALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDT 551
ALD IA ++GS+RDAE +L+QLSLLGK+IT SL EL+G+VSD++LL+LL+LA+SSDT
Sbjct: 649 DALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDT 708
Query: 552 SNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQK 610
TV RARELM S +DPM L+SQLA LIMDI+AG ++ +FFG + +E+++++
Sbjct: 709 VETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNESELER 768
Query: 611 LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L ALK+LSE EKQLR S ++TW T LLQL S+ S
Sbjct: 769 LKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPS 805
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%)
Query: 702 GTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKL 761
G L IW E C S +L+ L GKL S+ G+ VA + F D R E+ +
Sbjct: 913 GKLCYIWVHCIERCHSKTLRQLLHNHGKLVSVCEVEGVLVAYVAFEDADIKVRVERFLRS 972
Query: 762 IASTLQSVLGCNVEIRLLCAPVSAKENK 789
I ++++ VL NVE+R++ P EN+
Sbjct: 973 ITNSMEMVLRRNVEVRIIHLPNGEGENQ 1000
>gi|125536092|gb|EAY82580.1| hypothetical protein OsI_37801 [Oryza sativa Indica Group]
Length = 1174
Score = 362 bits (930), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 184/356 (51%), Positives = 255/356 (71%), Gaps = 5/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP F E+VGQ++V +SL +AI+R + YLF GPRGTGKTS +RIF+ L+C
Sbjct: 401 SLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLSC 460
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPP--FSSRFKI 413
L+ + KPCG+C+EC F SG ++ EVD+ +R+ +L+++ +PP SSR+K+
Sbjct: 461 LAPGENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLEN--IPPSATSSRYKL 518
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F++DEC ++ + W+ + L+ VVFV IT + D LPR+ +SR QKY F KIKD D
Sbjct: 519 FVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDID 578
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I RLRRICV+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+G+
Sbjct: 579 IVCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGV 638
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCS 592
VS+++LLDLL++A+SSDT+ TV R+RELM S IDPM L+SQLA LIMDI+AG L D +
Sbjct: 639 VSEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKLADST 698
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
G+ + ++++L +ALKILS+ EKQ+R+S ++TW T ALLQLS SS
Sbjct: 699 ANDMAVGGRSLTGGELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLSCGHSS 754
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 702 GTLES---IWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKS 758
G LES IW E C S +L+ L GKL + G +A + F R SRAE+
Sbjct: 859 GNLESLAHIWMRCIENCHSKTLQQLLFDHGKLVCVRQCEGCVLAFIAFEDRSIRSRAERF 918
Query: 759 WKLIASTLQSVLGCNVEIRLLCAP 782
I +++++VL C VE+R+ P
Sbjct: 919 LSSITNSIETVLRCTVEVRMGLLP 942
>gi|18395372|ref|NP_565285.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
gi|8980710|gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis thaliana]
gi|20197093|gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit
[Arabidopsis thaliana]
gi|330250491|gb|AEC05585.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
Length = 1218
Score = 362 bits (928), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 199/398 (50%), Positives = 273/398 (68%), Gaps = 9/398 (2%)
Query: 258 DLEDNPLLSGEIGETAHYGRSGHKLI----NNEISTYSETPWSLSQKFRPNFFDELVGQN 313
DLE L G T++ + G + + E + ET S SQK+RP FF+EL+GQ+
Sbjct: 408 DLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFEELIGQS 467
Query: 314 VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373
+VV+SL++A+ R + YLF GPRGTGKTS +RIF+AALNC++ E+ KPCG C+EC F
Sbjct: 468 IVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECNDF 527
Query: 374 SSGRSRDVKEVDSVRINRSDRVGSLMKS--AFLPPFSSRFKIFIIDECQLLHGETWATVL 431
SG+S+D E+D +D+V L+K+ LP SS +K+F+IDEC LL +TW + L
Sbjct: 528 MSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSKTWLSFL 587
Query: 432 NSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQ 491
LEN Q VVF+ IT +L+ +PR+ SR QK+ F K+KD DI RL++I +E ++ D
Sbjct: 588 KFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDL 647
Query: 492 AALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDT 551
ALD IA ++GS+RDAE +L+QLSLLGK+IT +L EL+G+VSD++LL+LL+LALSSDT
Sbjct: 648 HALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSSDT 707
Query: 552 SNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF--GKHTSEADMQ 609
+ TV RAREL+ DP+ L+SQLA+LIMDI+AG + E N F G++ +EADM+
Sbjct: 708 AETVKRARELLDLGADPIVLMSQLASLIMDIIAG-TYKVVDEKYSNAFFDGRNLTEADME 766
Query: 610 KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L ALK+LSE EKQLR+S ++TW T LLQL S S
Sbjct: 767 GLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPS 804
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L IW+ E C S +L+ L GKL S+ G+ VA + F D RAE+ I
Sbjct: 912 LNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEGILVAYIAFGENDIKLRAERFLSSIT 971
Query: 764 STLQSVLGCNVEIRLLCAP 782
++++ VL +VE+R++ P
Sbjct: 972 NSIEMVLRRSVEVRIILLP 990
>gi|222615775|gb|EEE51907.1| hypothetical protein OsJ_33507 [Oryza sativa Japonica Group]
Length = 905
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 220/544 (40%), Positives = 320/544 (58%), Gaps = 60/544 (11%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP F+ELVGQ+ VV+SL +AI R + YLFHGPRGTGKTSA+RIF+AAL+C
Sbjct: 89 SLSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSC 148
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+++ + KPCG C EC F +G ++ EVD+ +R+ L+++ SSR+K+F+
Sbjct: 149 VAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLIENIPASATSSRYKVFV 208
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DEC ++ + W+ + L+ VVF+ IT + + LPR+ +SR QKY F KIKD DI
Sbjct: 209 VDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIV 268
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RLR+I V+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+G+VS
Sbjct: 269 CRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVS 328
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCSEA 594
+++LLDLL++A+S+DT+ TV R+RELM S +DPM L+SQLA LIMDI+AG L D +
Sbjct: 329 EEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCG 388
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQL----------------------------R 626
+ G++ ++A++++L +ALKILS+ EKQ+ R
Sbjct: 389 GEGIGGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHNSEMIQSR 448
Query: 627 MSKHQTTWLTVALLQLSSSESS---------LDLNDSK--LCLRYAHDKDG-DSHCTISP 674
S Q+ T ++ + ESS L S+ L LR A ++S
Sbjct: 449 SSSKQSAKATSEIVMDAVRESSASRTTAHPLFTLRGSRKTLDLRTASGHSSPQGVVSVSS 508
Query: 675 R----DSFKHLVRGSC------VGDKANKLGALEDYKGT------LESIWKTATELCQSN 718
R D+ KH G C + D A + + E T L IW+ + C S
Sbjct: 509 RMRANDNLKH---GECRSVDRVLQDSAQRSNSSELRPMTNVSSDNLARIWRKCIDNCHSK 565
Query: 719 SLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRL 778
+LK L GKL+S+ G +A + F D SRA++ I +++++VL CNVE+R+
Sbjct: 566 TLKQLLCDHGKLASVKDYGGYYIAFIAFEGSDIKSRAQRFTSSIRNSMETVLRCNVEVRI 625
Query: 779 LCAP 782
P
Sbjct: 626 GLMP 629
>gi|218185516|gb|EEC67943.1| hypothetical protein OsI_35669 [Oryza sativa Indica Group]
Length = 860
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 257/354 (72%), Gaps = 1/354 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP F+ELVGQ+ VV+SL +AI R + YLFHGPRGTGKTSA+RIF+AAL+C
Sbjct: 89 SLSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSC 148
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+++ + KPCG C EC F +G ++ EVD+ +R+ L+++ SSR+K+F+
Sbjct: 149 VAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLIENIPASATSSRYKVFV 208
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DEC ++ + W+ + L+ VVF+ IT + + LPR+ +SR QKY F KIKD DI
Sbjct: 209 VDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIV 268
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RLR+I V+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+G+VS
Sbjct: 269 CRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVS 328
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCSEA 594
+++LLDLL++A+S+DT+ TV R+RELM S +DPM L+SQLA LIMDI+AG L D +
Sbjct: 329 EEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCG 388
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ G++ ++A++++L +ALKILS+ EKQ+R+S ++TW T ALLQL S +S
Sbjct: 389 GEGIGGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHNS 442
>gi|297814494|ref|XP_002875130.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp.
lyrata]
gi|297320968|gb|EFH51389.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp.
lyrata]
Length = 1222
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 199/398 (50%), Positives = 273/398 (68%), Gaps = 9/398 (2%)
Query: 258 DLEDNPLLSGEIGETAHYGRSGHKLI----NNEISTYSETPWSLSQKFRPNFFDELVGQN 313
DLE L G T++ + G + + E + ET S SQK+RP FF+EL+GQ+
Sbjct: 412 DLEAQSRLDGRRWSTSYRSQDGLEAVALDGEGEDGSTPETIRSFSQKYRPMFFEELIGQS 471
Query: 314 VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373
+VV+SL++A+ R + YLF GPRGTGKTS +RIF+AALNC++ E+ KPCG C+EC F
Sbjct: 472 IVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECNEF 531
Query: 374 SSGRSRDVKEVDSVRINRSDRVGSLMKS--AFLPPFSSRFKIFIIDECQLLHGETWATVL 431
SG+S+D E+D +D+V L+K+ LP SS +K+F+IDEC LL +TW + L
Sbjct: 532 MSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPLKTWLSFL 591
Query: 432 NSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQ 491
LEN Q VVF+ IT +L+ +PR+ SR QK+ F K+KD DI RL++I +E ++ D
Sbjct: 592 KFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDL 651
Query: 492 AALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDT 551
ALD IA ++GS+RDAE +L+QLSLLGK+IT +L EL+G+VSD++LL+LL+LALSSDT
Sbjct: 652 HALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSSDT 711
Query: 552 SNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF--GKHTSEADMQ 609
+ TV RAREL+ DP+ L+SQLA+LIMDI+AG + E N F G++ +EADM+
Sbjct: 712 AETVKRARELLDLGADPIVLMSQLASLIMDIIAG-TYKVVDEKYSNAFLDGRNLTEADME 770
Query: 610 KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L ALK+LSE EKQLR+S ++TW T LLQL S S
Sbjct: 771 GLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPS 808
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L IW+ E C S +L+ L GKL S+ G+ VA + F D RAE+ I
Sbjct: 916 LNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEGILVAYIAFGETDIKLRAERFLSSIT 975
Query: 764 STLQSVLGCNVEIRLLCAP 782
++++ VL +VE+R++ P
Sbjct: 976 NSIEMVLRRSVEVRIILLP 994
>gi|357157005|ref|XP_003577650.1| PREDICTED: uncharacterized protein LOC100846453 [Brachypodium
distachyon]
Length = 1180
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 179/356 (50%), Positives = 253/356 (71%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP + E+VGQN V++SL +AI R + YLFHGPRGTGKTS +RIF+AAL+C
Sbjct: 416 SLSQKYRPRSYHEIVGQNFVIQSLTNAIIRERIAPAYLFHGPRGTGKTSVARIFSAALSC 475
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ + KPCG+C EC F +G ++ EVD+ +R+ L+++ SSR+K+F+
Sbjct: 476 VANGENKPCGICTECTDFFTGNGTNLIEVDASNRKGINRIRQLIENIPASATSSRYKVFV 535
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DEC ++ + W+ + L+ VVF+ IT + + +PR+ +SR QKY F KIKD DI
Sbjct: 536 VDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENIPRAVISRCQKYMFSKIKDIDIV 595
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RLR+I V+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+G+VS
Sbjct: 596 CRLRKIAVKENLDIELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVS 655
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LED--CS 592
+++LLDLL++A+SSDT+ TV R+RELM S +DPM L+SQLA LIMDI+AG L D C
Sbjct: 656 EEKLLDLLEIAMSSDTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCG 715
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
E G++ ++A++++L +ALKILS+ EKQ+R+S + TW T ALLQL S S
Sbjct: 716 EG---IGGRNITDAELERLQQALKILSDAEKQIRLSSERATWFTAALLQLGSGHDS 768
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L IW+ E C S +L+ L GKL+S+ G +A + F SRA++ I
Sbjct: 871 LVKIWRNCIEKCHSKTLQQLLSDHGKLASIKECEGYLLAFIAFEDSTIKSRAQRFVSSIR 930
Query: 764 STLQSVLGCNVEIRLLCAP 782
+++++VL CNVE+ + P
Sbjct: 931 NSMETVLRCNVEVIVGLMP 949
>gi|242058891|ref|XP_002458591.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor]
gi|241930566|gb|EES03711.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor]
Length = 1176
Score = 356 bits (913), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 178/354 (50%), Positives = 254/354 (71%), Gaps = 1/354 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP F E+VGQN VV+SL +AI+R + YLFHGPRGTGKTS++RI +AAL+C
Sbjct: 418 SLSQKYRPRSFLEIVGQNFVVQSLSNAIARERIAPAYLFHGPRGTGKTSSARILSAALSC 477
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + KPCG+C EC+ F +G ++ EVD+ +RV L+++ SSR+K+F+
Sbjct: 478 TATGETKPCGVCTECSDFFTGNGINLIEVDATNRKGINRVRHLIENIPASATSSRYKVFV 537
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DEC ++ + W+ + L+ VVF+ IT + + LPRS +SR QKY F KIKD DI
Sbjct: 538 VDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRSVVSRCQKYMFSKIKDIDIV 597
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RLR+I ++E ++ + AALD IA S+GS+RDAE +LDQL LLGKKIT SL +L+G+VS
Sbjct: 598 CRLRKIAMKENLDVELAALDLIALNSDGSLRDAETMLDQLCLLGKKITPSLVNDLVGVVS 657
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCSEA 594
+++LLDLL++A+SSDT+ TV R+RELM S +DPM L+SQLA LIMDI+AG L D +
Sbjct: 658 EEKLLDLLEIAMSSDTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCG 717
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
G++ ++A++++L +AL+ILS+ EKQ+R+S ++TW T ALLQL S +S
Sbjct: 718 GDGIGGRNITDAELERLQQALRILSDAEKQIRLSSERSTWFTAALLQLGSGHNS 771
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L IW+ E C S +L+ L GKL+S+ G VA + F D RA++ I
Sbjct: 880 LTRIWRKCIENCHSKTLRQLLYDHGKLASVKECEGTIVAFIAFEDNDIKFRAQRFISSIR 939
Query: 764 STLQSVLGCNVEIRL 778
+++++VL CNVE+R+
Sbjct: 940 NSMETVLKCNVEVRI 954
>gi|357154954|ref|XP_003576959.1| PREDICTED: uncharacterized protein LOC100826587 [Brachypodium
distachyon]
Length = 1204
Score = 356 bits (913), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 180/356 (50%), Positives = 254/356 (71%), Gaps = 5/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP+ F E+VGQ++VV+SL ++I R + YL GPRGTGKTS +RIF+AAL+C
Sbjct: 411 SLSQKYRPSIFSEIVGQDIVVQSLSNSIIRERIAPAYLLQGPRGTGKTSVARIFSAALSC 470
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPP--FSSRFKI 413
+ D KPCG C+EC F SG ++ EVD+ +R+ L+++ +PP SSR+K+
Sbjct: 471 AATGDNKPCGTCKECTEFFSGNGINLIEVDASNRKSINRIKHLLEN--IPPSATSSRYKV 528
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F++DEC ++ + W+ + L+ VVF+ IT + + LPR+ +SR QKY F KIKD D
Sbjct: 529 FVVDECHMVSSKVWSAFVKFLDEQLPRVVFIFITIDPNNLPRAVISRCQKYIFSKIKDID 588
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I RLR+IC++E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+G+
Sbjct: 589 IVCRLRKICMKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGV 648
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCS 592
VS+++LLDLL++A+SSDT+ TV R+RELM S IDP+ L+SQLA LIMDI+AG L D +
Sbjct: 649 VSEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPIALMSQLAGLIMDIIAGTYKLADST 708
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
G+ + ++++L +ALKILS+ EKQ+R+S ++TW T ALLQL S SS
Sbjct: 709 CNGVGIGGRSLTAGELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHSS 764
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L IW E C S L+ L GKL S G +A + F R +SR ++ I
Sbjct: 873 LAQIWMRCIENCHSKILQQLLFDHGKLVSTRQCEGRTIAFIAFEDRGIMSRVQRFLSSIT 932
Query: 764 STLQSVLGCNVEIRL 778
+++++VL CNVE+R+
Sbjct: 933 NSMETVLRCNVEVRV 947
>gi|414880241|tpg|DAA57372.1| TPA: hypothetical protein ZEAMMB73_111215 [Zea mays]
Length = 1220
Score = 355 bits (910), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/354 (50%), Positives = 254/354 (71%), Gaps = 1/354 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP F E+VGQN VV+SL +AI+R + YLFHGPRGTGKTS++RI +AAL+C
Sbjct: 464 SLSQKYRPRSFLEIVGQNFVVQSLSNAIARERIAPAYLFHGPRGTGKTSSARILSAALSC 523
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + KPCG+C EC+ F +G ++ EVD+ +RV L+++ SSR+K+F+
Sbjct: 524 TATGETKPCGVCTECSDFFTGNGTNLIEVDATNRKGINRVRHLIENIPASATSSRYKVFV 583
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DEC ++ + W+ + L+ VVF+ IT + + LPRS +SR QKY F KIKD DI
Sbjct: 584 VDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRSVVSRCQKYMFSKIKDIDIV 643
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RLR+I ++E ++ + AALD IA S+GS+RDAE +LDQL LLGKKIT SL +L+G+VS
Sbjct: 644 CRLRKIAMKENLDVELAALDLIALNSDGSLRDAETMLDQLCLLGKKITPSLVNDLVGVVS 703
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCSEA 594
+++LLDLL++A+SS+T+ TV R+RELM S +DPM L+SQLA LIMDI+AG L D +
Sbjct: 704 EEKLLDLLEIAMSSNTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCG 763
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
G++ ++A++++L +AL+ILS+ EKQ+R+S ++TW T ALLQL S +S
Sbjct: 764 GDGIGGRNITDAELERLQQALRILSDAEKQIRLSSERSTWFTAALLQLGSGHNS 817
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L IW E C S +L+ L GKL+S+ G VA + F D RA++ I
Sbjct: 924 LTRIWMKCIENCHSKTLRQLLYDHGKLTSVKECEGTIVAFIAFEDNDIKFRAQRFISSIR 983
Query: 764 STLQSVLGCNVEIRL 778
+++++VL CNVE+R+
Sbjct: 984 NSMETVLKCNVEVRI 998
>gi|297740543|emb|CBI30725.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 352 bits (904), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 208/544 (38%), Positives = 309/544 (56%), Gaps = 29/544 (5%)
Query: 236 HGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPW 295
+GCG+ WSR ++ L D+ L G + R GH+
Sbjct: 227 NGCGIPWNWSRIHHRGKTFL--DMAGRSLSCGL--SDSRLRRGGHQ-------------- 268
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+QK+ P F LVGQN+V ++L +A+ + V Y+F+GP GTGKTS +RIFA ALNC
Sbjct: 269 NLTQKYMPRTFGGLVGQNLVAQALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFARALNC 328
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S+E KPCG C C G+SR+++EV V + + +L+ + +++++FI
Sbjct: 329 PSMEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNLDFEGIMNLLDNVIASQLPTQYRVFI 388
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
D+C L + W+ + ++ + +VFV+++ LD LP +SR QK+ FPK+KD DI
Sbjct: 389 FDDCDTLSPDCWSAISKLIDRAPRRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKDADII 448
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L+ I +E + D+ AL IA++S+GS+RDAEM L+QLSLLG++I++ L EL+G++S
Sbjct: 449 YTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 508
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
D++L+DLLDLALS+DT NTV RE+M + ++P+ L+SQLA +I DILAG R
Sbjct: 509 DEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMSQLATVITDILAGSYDFTKERLR 568
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDS 654
+ FF + S+ DM+KL +ALK LSE EKQLRMS + TWLT ALLQL+ + + + S
Sbjct: 569 RKFFRRQALSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPSSS 628
Query: 655 KLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTATEL 714
R H G + S + + + G + K K +E IW E
Sbjct: 629 ADTNRKKHAGSGMARQQSSAHSADTNRLSGKQIPGKVRK---------EIEEIWLEVLEK 679
Query: 715 CQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNV 774
Q ++LK FL K+GKL S+ + V +L F S+AEK I +S+LG V
Sbjct: 680 IQVDTLKEFLYKEGKLISVSIGAAPTV-QLMFSSHLTKSKAEKYRGHILRAFESILGSPV 738
Query: 775 EIRL 778
I +
Sbjct: 739 TIEI 742
>gi|225443722|ref|XP_002265273.1| PREDICTED: uncharacterized protein LOC100249702 [Vitis vinifera]
Length = 1161
Score = 348 bits (893), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 195/487 (40%), Positives = 289/487 (59%), Gaps = 20/487 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+QK+ P F LVGQN+V ++L +A+ + V Y+F+GP GTGKTS +RIFA ALNC
Sbjct: 457 NLTQKYMPRTFGGLVGQNLVAQALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFARALNC 516
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S+E KPCG C C G+SR+++EV V + + +L+ + +++++FI
Sbjct: 517 PSMEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNLDFEGIMNLLDNVIASQLPTQYRVFI 576
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
D+C L + W+ + ++ + +VFV+++ LD LP +SR QK+ FPK+KD DI
Sbjct: 577 FDDCDTLSPDCWSAISKLIDRAPRRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKDADII 636
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L+ I +E + D+ AL IA++S+GS+RDAEM L+QLSLLG++I++ L EL+G++S
Sbjct: 637 YTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 696
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
D++L+DLLDLALS+DT NTV RE+M + ++P+ L+SQLA +I DILAG R
Sbjct: 697 DEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMSQLATVITDILAGSYDFTKERLR 756
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDS 654
+ FF + S+ DM+KL +ALK LSE EKQLRMS + TWLT ALLQL+ D
Sbjct: 757 RKFFRRQALSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP--------DQ 808
Query: 655 KLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALE---DYKGTLESIWKTA 711
+ L + +H + P +S H N+L + + +E IW
Sbjct: 809 QYMLPSSSADTSFNHSPLVPNNSSAH-------SADTNRLSGKQIPGKVRKEIEEIWLEV 861
Query: 712 TELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLG 771
E Q ++LK FL K+GKL S+ + V +L F S+AEK I +S+LG
Sbjct: 862 LEKIQVDTLKEFLYKEGKLISVSIGAAPTV-QLMFSSHLTKSKAEKYRGHILRAFESILG 920
Query: 772 CNVEIRL 778
V I +
Sbjct: 921 SPVTIEI 927
>gi|357447087|ref|XP_003593819.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
gi|355482867|gb|AES64070.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
Length = 1177
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 215/586 (36%), Positives = 316/586 (53%), Gaps = 49/586 (8%)
Query: 236 HGCGLSCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPW 295
HG + CW S + + D + ++ A G +KL N S +
Sbjct: 409 HGSTENACWGHG-YSGELGIYGDNLFKQDIDSDLASEARSGSQHNKLRRNHHSRHQ---- 463
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL+QK+ P F ++VGQN+V ++L +A+SR V Y+F+GP GTGKTS +RIFA ALNC
Sbjct: 464 SLTQKYIPRTFRDMVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNC 523
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S E KPCG C C G+SR+++EV V + + L+ + + S++++FI
Sbjct: 524 SSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPSQYRVFI 583
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
D+C L + W + ++ + VVF++++ LD LP +SR QK+ FPK+KD DI
Sbjct: 584 FDDCDSLSADCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIV 643
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L I +E ++ D+ AL IA++S+GS+RDAEM L+QLSLLG++I++ L EL+G++S
Sbjct: 644 YTLHGIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 703
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
D++L+DLLDLALS+DT NTV R +M + ++P+ L+SQLA +I DILAG R
Sbjct: 704 DEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERCR 763
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-------S 647
+ FF + S+ DM+KL +ALK LSE EKQLRMS + TWLT ALLQL+ + S
Sbjct: 764 RKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSS 823
Query: 648 SLDLNDSKLCLRYAHDKDGDSHCTISP--------RDSFKHLVRGSCVGDKANKLGALED 699
N S L + K+ + T +P R S + S G A++ +L
Sbjct: 824 DNSFNHSPFALNNGNVKEA-TRNTGNPVEILNRTRRMSMDARMESSNAGSSADRRHSLSG 882
Query: 700 Y------------------------KGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHV 735
Y + ++ IW E LK FL K GKL + +
Sbjct: 883 YAPQHTYSHSTDKTRINERQTSDRNRKEIDEIWLEVLERIHYPGLKEFLYKAGKL--IFI 940
Query: 736 NHGLA-VAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLC 780
+ G A +L F+ + S AEK I +SVLG +V I + C
Sbjct: 941 SFGAAPTVQLMFNSQLSKSTAEKFTGHILQAFESVLGSSVTIEIRC 986
>gi|255562516|ref|XP_002522264.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223538517|gb|EEF40122.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 1105
Score = 343 bits (879), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 209/512 (40%), Positives = 294/512 (57%), Gaps = 21/512 (4%)
Query: 273 AHYGRSG--HKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTS 330
A RSG HKL N S + + +QK+ P F +LVGQN+V ++L +A+ R V
Sbjct: 434 ASEARSGGQHKLRRNHNSRHQ----NFTQKYMPRTFRDLVGQNLVAQALSNAVVRRKVGL 489
Query: 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRIN 390
Y+F+GP GTGKTS +RIFA ALNC SLE KPCG C C G+SR+++EV V
Sbjct: 490 LYVFYGPHGTGKTSCARIFARALNCQSLEHPKPCGYCNSCISHDMGKSRNIREVGPVSNF 549
Query: 391 RSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450
+ L+ + + S++++FI D C L + W+ + ++ + VVFV+++ L
Sbjct: 550 DFGNIVDLLDNMIISHLPSQYRVFIFDGCDTLSSDCWSAISKVIDRAPRRVVFVLVSSSL 609
Query: 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEM 510
D LP +SR QK+ FPK+KD DI L+ I +E I+ D+ AL IA++S+GS+RDA+M
Sbjct: 610 DVLPHIIISRCQKFFFPKLKDADIIYTLQWIASKEDIDIDKDALKLIASRSDGSLRDAQM 669
Query: 511 LLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ 570
L+QLSLLG KI++ L EL+G++SD++L+DLLDLALS+DT NTV R +M + ++P+
Sbjct: 670 TLEQLSLLGLKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKHLRVIMETGVEPLA 729
Query: 571 LISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEKQLRMSK 629
L+SQLA +I DILAG R+ FF + S+ DM+KL +ALK LSE EKQLRMS
Sbjct: 730 LMSQLATVITDILAGSYNFTKERHRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSN 789
Query: 630 HQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGD 689
+ TWLT ALLQL+ + + L S + H K G + S S + G V
Sbjct: 790 DKLTWLTAALLQLAPDQQYM-LPSSSTETSFNH-KTGVAPQWASALSSDTVRINGKQVSG 847
Query: 690 KANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLA-VAELEFHH 748
K K E IW Q NS+K FL ++GKL S V+ G A +L F
Sbjct: 848 KTRK---------GYEEIWLEVIGKIQFNSIKEFLYQEGKLIS--VSFGAAPTVQLMFSS 896
Query: 749 RDYVSRAEKSWKLIASTLQSVLGCNVEIRLLC 780
+AEK I +SV G + + + C
Sbjct: 897 HLTKLKAEKFRAHILQAFESVFGSQITLEIRC 928
>gi|357128701|ref|XP_003566008.1| PREDICTED: uncharacterized protein LOC100843955 [Brachypodium
distachyon]
Length = 1097
Score = 342 bits (876), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 203/515 (39%), Positives = 304/515 (59%), Gaps = 35/515 (6%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL+QK+ P F ++VGQ++VV++L +AI R + Y+F+GP GTGKTS +R+FA ALNC
Sbjct: 357 SLTQKYAPRTFKDVVGQSLVVQALSNAILRRKIGLVYVFYGPHGTGKTSCARVFAKALNC 416
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S E +PC LC C + G+SR + E+ V D + ++ + L P ++ ++FI
Sbjct: 417 HSGEHPRPCDLCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPAPAQHRVFI 476
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+D+C L +TW+ + +E + VVF++I+P LD LP +SR QK+ FPK+K+ DI
Sbjct: 477 VDDCNTLPPDTWSVISKVVERAPRRVVFILISPNLD-LPHIIMSRCQKFFFPKLKECDIV 535
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ L+ IC + ++ D+ AL IA++S+GS+RDAEM LDQLSLLG++I++SL EL+G+VS
Sbjct: 536 NTLQWICTSDGLDVDRDALRLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVGLVS 595
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
DD+L++LLDLALS+DT+NTV R++ + ++P+ L+SQLA +I DILAG R
Sbjct: 596 DDKLVNLLDLALSADTANTVKTLRDITETGVEPLSLMSQLATIITDILAGTYTFTQERIR 655
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--------SSE 646
+ FF + T S+ DM++L +ALK LSE EKQLR+S + TWLT ALLQL+ SS
Sbjct: 656 RRFFKRPTLSKEDMERLRQALKTLSEAEKQLRLSNDKMTWLTAALLQLAPDKQYILPSSS 715
Query: 647 SSLDLNDSKLC------LRYAHDKDGDSH-------CT--------ISPRDSFKHLVRGS 685
+S N L A D+ + C+ I R +H G
Sbjct: 716 TSTSFNQGNEIYAGHHGLPRASDQGNQQYRNSNAGICSSNVMASTYIGGRRPREHTPDGC 775
Query: 686 CVGDKANKLGALED-YKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAEL 744
+ A ++ K + IW+ E QS+SL+ + K+G++ S+ + V +L
Sbjct: 776 ILSSSATRVNERSKCSKTDNDMIWQAVLENIQSDSLRKMMAKEGRVISVSLGTAPTV-QL 834
Query: 745 EFHHRDYVSRAEKSWKLIASTLQSVLGCNV--EIR 777
F S+AEKS I +SVL N+ EIR
Sbjct: 835 TFSSHVNKSKAEKSRGQILQAFESVLSSNIILEIR 869
>gi|79530257|ref|NP_199384.2| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332007905|gb|AED95288.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 966
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 235/663 (35%), Positives = 359/663 (54%), Gaps = 55/663 (8%)
Query: 229 IDVNQSHHGCGLSCCWSR-----TPRSRQSNLSSDLEDNPLL-------------SGEIG 270
+D+ CG+S R TP S+ SSD E PLL SGE+G
Sbjct: 257 LDIAGRSLSCGISDSKGRKGEAGTPMFSDSS-SSDREALPLLVDSADNEEWVHDYSGELG 315
Query: 271 ETA-HYGRSGHKLINNEISTYSETPW--SLSQKFRPNFFDELVGQNVVVRSLLSAISRGM 327
A + ++G + + S+ T W S +QK+ P F +L+GQN+VV++L +AI++
Sbjct: 316 IFADNLLKNGKDSVIGKKSSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRR 375
Query: 328 VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV 387
V Y+FHGP GTGKTS +R+FA ALNC S E KPCG+C C + G++R ++E+ V
Sbjct: 376 VGLLYVFHGPNGTGKTSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPV 435
Query: 388 RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447
+ S +L+ + + + I D+C + + W T+ ++ + VVFV++
Sbjct: 436 K---SFDFENLLDKTNIRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVC 492
Query: 448 PELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRD 507
LD LP +SR QK+ FPK+KD DI L+ I +E I+ D+ AL +A++S+GS+RD
Sbjct: 493 SSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRD 552
Query: 508 AEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKID 567
AEM L+QLSLLG +I++ L E++G++SD++L+DLLDLALS+DT NTV R +M + ++
Sbjct: 553 AEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLE 612
Query: 568 PMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEKQLR 626
P+ L+SQLA +I DILAG + ++ FF + S+ DM+KL +ALK LSE+EKQLR
Sbjct: 613 PLALMSQLATVITDILAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLR 672
Query: 627 MSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGD-SHCTISPRDSFKHLVRGS 685
+S + TWLT ALLQL+ D + L ++ D +H ++ D H+V G+
Sbjct: 673 VSNDKLTWLTAALLQLAP--------DKQYLLPHSSSADASFNHTPLTDSDPSNHVVAGT 724
Query: 686 CVGDKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELE 745
D +K G + ++E IW E + N L+ FL K+GK+ S+ + V +L
Sbjct: 725 RRDD--SKQGFSCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSAPMV-QLM 781
Query: 746 FHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFSLFSCSRWVQQSR 805
F+ S AE + I ++VLG V + + E+K S Q
Sbjct: 782 FNSPIAKSTAENFEEHILKAFEAVLGSPVTLEM------RTESKKDLGFSSL-----QGL 830
Query: 806 STTERETDSDYSDYF----SEKPMIRARHT-LTCSSDCGSQMSHNCCH-KTDVVRALRSS 859
S ER +S S+ SE PM R R L S + + + K + + ++ +
Sbjct: 831 SNGERFRESGRSEIVEVADSESPMTRVRRKHLEASQNQNQNQNQSIVRGKVSLAQVIKQA 890
Query: 860 EGN 862
EGN
Sbjct: 891 EGN 893
>gi|334188215|ref|NP_001190476.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332007906|gb|AED95289.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 956
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 234/662 (35%), Positives = 355/662 (53%), Gaps = 63/662 (9%)
Query: 229 IDVNQSHHGCGLSCCWSR-----TPRSRQSNLSSDLEDNPLL-------------SGEIG 270
+D+ CG+S R TP S+ SSD E PLL SGE+G
Sbjct: 257 LDIAGRSLSCGISDSKGRKGEAGTPMFSDSS-SSDREALPLLVDSADNEEWVHDYSGELG 315
Query: 271 ETA-HYGRSGHKLINNEISTYSETPW--SLSQKFRPNFFDELVGQNVVVRSLLSAISRGM 327
A + ++G + + S+ T W S +QK+ P F +L+GQN+VV++L +AI++
Sbjct: 316 IFADNLLKNGKDSVIGKKSSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRR 375
Query: 328 VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV 387
V Y+FHGP GTGKTS +R+FA ALNC S E KPCG+C C + G++R ++E+ V
Sbjct: 376 VGLLYVFHGPNGTGKTSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPV 435
Query: 388 RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447
+ S +L+ + + + I D+C + + W T+ ++ + VVFV++
Sbjct: 436 K---SFDFENLLDKTNIRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVC 492
Query: 448 PELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRD 507
LD LP +SR QK+ FPK+KD DI L+ I +E I+ D+ AL +A++S+GS+RD
Sbjct: 493 SSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRD 552
Query: 508 AEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKID 567
AEM L+QLSLLG +I++ L E++G++SD++L+DLLDLALS+DT NTV R +M + ++
Sbjct: 553 AEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLE 612
Query: 568 PMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRM 627
P+ L+SQLA +I DILAG +F S+ DM+KL +ALK LSE+EKQLR+
Sbjct: 613 PLALMSQLATVITDILAGSY---------DFTKDQLSKEDMEKLKQALKTLSESEKQLRV 663
Query: 628 SKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGD-SHCTISPRDSFKHLVRGSC 686
S + TWLT ALLQL+ D + L ++ D +H ++ D H+V G+
Sbjct: 664 SNDKLTWLTAALLQLAP--------DKQYLLPHSSSADASFNHTPLTDSDPSNHVVAGTR 715
Query: 687 VGDKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEF 746
D +K G + ++E IW E + N L+ FL K+GK+ S+ + V +L F
Sbjct: 716 RDD--SKQGFSCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSAPMV-QLMF 772
Query: 747 HHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFSLFSCSRWVQQSRS 806
+ S AE + I ++VLG V + + E+K S Q S
Sbjct: 773 NSPIAKSTAENFEEHILKAFEAVLGSPVTLEM------RTESKKDLGFSSL-----QGLS 821
Query: 807 TTERETDSDYSDYF----SEKPMIRARHT-LTCSSDCGSQMSHNCCH-KTDVVRALRSSE 860
ER +S S+ SE PM R R L S + + + K + + ++ +E
Sbjct: 822 NGERFRESGRSEIVEVADSESPMTRVRRKHLEASQNQNQNQNQSIVRGKVSLAQVIKQAE 881
Query: 861 GN 862
GN
Sbjct: 882 GN 883
>gi|449433559|ref|XP_004134565.1| PREDICTED: uncharacterized protein LOC101212118 [Cucumis sativus]
Length = 1120
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 206/536 (38%), Positives = 300/536 (55%), Gaps = 33/536 (6%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L+QK+ P F +LVGQ++V ++L +A+ R V Y+F+GP GTGKTS +RIFA ALNC
Sbjct: 457 LTQKYMPRTFKDLVGQHLVAQALSNAVLRKKVGLLYVFYGPHGTGKTSCARIFARALNCQ 516
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
SLE KPCGLC C + G+SR+++EV V + + L+ S++ +FI
Sbjct: 517 SLEHSKPCGLCNSCVGYDMGKSRNIREVVPVSNLDFESITELLDHMIASQLPSQYTVFIF 576
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
D+C W+ + ++ + +VFV++ LD LP +SR QK+ FPK+KD D+
Sbjct: 577 DDCDSFSANCWSAITKVIDRAPRRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIH 636
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L+ I +E + D+ AL I ++S+GS+RDAEM L+QLSLLG++I++ L EL+G++SD
Sbjct: 637 TLQWIATQENLEIDKDALKLITSRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISD 696
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
++L+DLLDLALS+DT NTV R ++ S ++PM L+SQ+A +I DILAG R+
Sbjct: 697 EKLVDLLDLALSADTVNTVKHLRLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRR 756
Query: 597 NFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS-------SSESS 648
FF + S+ DM+KL +ALK LSE EKQLRMS + TWLT ALLQL+ SS +
Sbjct: 757 KFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLSSSAE 816
Query: 649 LDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIW 708
N S L L +S R R S V +K +E IW
Sbjct: 817 TSFNHSPLALN-----------NVSGRGISLDRKRHSGVSGTTHK---------AMEEIW 856
Query: 709 KTATELCQSNSLKTFLRKQGKLSSLHVNHGLA-VAELEFHHRDYVSRAEKSWKLIASTLQ 767
+ NS+K FL ++G L+S V+ G A L F+ + S+AEK + I +
Sbjct: 857 LEVLGKIRMNSIKEFLIQEGTLAS--VSFGAAPTVRLIFNSHNAKSKAEKLREQILQAFE 914
Query: 768 SVLGCNV--EIRLLCAPVSAKENKPSFSLFSCSRWVQQSRSTTERETDSDYSDYFS 821
S LG +V EIR + N S +L + + Q R + + + + Y S
Sbjct: 915 SALGSSVIIEIRYESKRDTLVGNHSSVTLPASKNGLLQIRDISGNMSQAQLTHYGS 970
>gi|9758675|dbj|BAB09214.1| unnamed protein product [Arabidopsis thaliana]
Length = 900
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 232/663 (34%), Positives = 354/663 (53%), Gaps = 67/663 (10%)
Query: 229 IDVNQSHHGCGLSCCWSR-----TPRSRQSNLSSDLEDNPLL-------------SGEIG 270
+D+ CG+S R TP S+ SSD E PLL SGE+G
Sbjct: 257 LDIAGRSLSCGISDSKGRKGEAGTPMFSDSS-SSDREALPLLVDSADNEEWVHDYSGELG 315
Query: 271 ETA-HYGRSGHKLINNEISTYSETPW--SLSQKFRPNFFDELVGQNVVVRSLLSAISRGM 327
A + ++G + + S+ T W S +QK+ P F +L+GQN+VV++L +AI++
Sbjct: 316 IFADNLLKNGKDSVIGKKSSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRR 375
Query: 328 VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV 387
V Y+FHGP GTGKTS +R+FA ALNC S E KPCG+C C + G++R ++E+ V
Sbjct: 376 VGLLYVFHGPNGTGKTSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPV 435
Query: 388 RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447
+ S +L+ + + + I D+C + + W T+ ++ + VVFV++
Sbjct: 436 K---SFDFENLLDKTNIRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVC 492
Query: 448 PELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRD 507
LD LP +SR QK+ FPK+KD DI L+ I +E I+ D+ AL +A++S+GS+RD
Sbjct: 493 SSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRD 552
Query: 508 AEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKID 567
AEM L+QLSLLG +I++ L E++G++SD++L+DLLDLALS+DT NTV R +M + ++
Sbjct: 553 AEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLE 612
Query: 568 PMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEKQLR 626
P+ L+SQLA +I DILAG + ++ FF + S+ DM+KL +ALK LSE+EKQLR
Sbjct: 613 PLALMSQLATVITDILAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLR 672
Query: 627 MSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGD-SHCTISPRDSFKHLVRGS 685
+S + TWLT ALLQL+ D + L ++ D +H ++ D H+V G+
Sbjct: 673 VSNDKLTWLTAALLQLAP--------DKQYLLPHSSSADASFNHTPLTDSDPSNHVVAGT 724
Query: 686 CVGDKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELE 745
D +K G + ++E IW E + N L+ FL K+GK+ S+ + + AE
Sbjct: 725 RRDD--SKQGFSCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSAKSTAENF 782
Query: 746 FHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFSLFSCSRWVQQSR 805
H I ++VLG V + + E+K S Q
Sbjct: 783 EEH-------------ILKAFEAVLGSPVTLEMRT------ESKKDLGFSSL-----QGL 818
Query: 806 STTERETDSDYSDYF----SEKPMIRARHT-LTCSSDCGSQMSHNCCH-KTDVVRALRSS 859
S ER +S S+ SE PM R R L S + + + K + + ++ +
Sbjct: 819 SNGERFRESGRSEIVEVADSESPMTRVRRKHLEASQNQNQNQNQSIVRGKVSLAQVIKQA 878
Query: 860 EGN 862
EGN
Sbjct: 879 EGN 881
>gi|449479207|ref|XP_004155535.1| PREDICTED: uncharacterized protein LOC101226355 [Cucumis sativus]
Length = 1120
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 206/536 (38%), Positives = 300/536 (55%), Gaps = 33/536 (6%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L+QK+ P F +LVGQ++V ++L +A+ R V Y+F+GP GTGKTS +RIFA ALNC
Sbjct: 457 LTQKYMPRTFKDLVGQHLVAQALSNAVLRKKVGLLYVFYGPHGTGKTSCARIFARALNCQ 516
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
SLE KPCGLC C + G+SR+++EV V + + L+ S++ +FI
Sbjct: 517 SLEHSKPCGLCNSCVGYDMGKSRNIREVVPVSNLDFESITELLDHMIASQLPSQYTVFIF 576
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
D+C W+ + ++ + +VFV++ LD LP +SR QK+ FPK+KD D+
Sbjct: 577 DDCDSFSANCWSAITKVIDRAPRRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIH 636
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L+ I +E + D+ AL I ++S+GS+RDAEM L+QLSLLG++I++ L EL+G++SD
Sbjct: 637 TLQWIATQENLEIDKDALKLITSRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISD 696
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
++L+DLLDLALS+DT NTV R ++ S ++PM L+SQ+A +I DILAG R+
Sbjct: 697 EKLVDLLDLALSADTVNTVKHLRLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRR 756
Query: 597 NFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS-------SSESS 648
FF + S+ DM+KL +ALK LSE EKQLRMS + TWLT ALLQL+ SS +
Sbjct: 757 KFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLSSSAE 816
Query: 649 LDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIW 708
N S L L +S R R S V +K +E IW
Sbjct: 817 TSFNHSPLALN-----------NVSGRGISLDRKRHSGVSGTTHK---------AMEEIW 856
Query: 709 KTATELCQSNSLKTFLRKQGKLSSLHVNHGLA-VAELEFHHRDYVSRAEKSWKLIASTLQ 767
+ NS+K FL ++G L+S V+ G A L F+ + S+AEK + I +
Sbjct: 857 LEVLGKIRMNSIKEFLIQEGTLAS--VSFGAAPTVRLIFNSHNAKSKAEKLREQILQAFE 914
Query: 768 SVLGCNV--EIRLLCAPVSAKENKPSFSLFSCSRWVQQSRSTTERETDSDYSDYFS 821
S LG +V EIR + N S +L + + Q R + + + + Y S
Sbjct: 915 SALGSSVIIEIRYESKRDTLVGNHSSVTLPASKNGLLQIRDISGNMSQAQLTHYGS 970
>gi|297791151|ref|XP_002863460.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297309295|gb|EFH39719.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 970
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 222/633 (35%), Positives = 346/633 (54%), Gaps = 52/633 (8%)
Query: 256 SSDLEDNPLL-------------SGEIGETA-HYGRSGHKLINNEISTYSETPW--SLSQ 299
SSD E +PLL SGE+G A + ++G + S+ W S +Q
Sbjct: 291 SSDREASPLLVDSAENEEWVHDYSGELGIFADNLLKNGKDSGFGKKSSRKNARWHQSFTQ 350
Query: 300 KFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE 359
K+ P F +L+GQN+VV++L +A+++ V Y+FHGP GTGKTS +RIFA ALNC S E
Sbjct: 351 KYAPRTFRDLLGQNLVVQALSNAVAKRRVGLLYVFHGPNGTGKTSCARIFARALNCHSTE 410
Query: 360 DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDEC 419
KPCG+C C + G++R ++E+ V+ S +L+ + + +FI D+C
Sbjct: 411 QSKPCGVCGSCVSYDGGKNRYIREMGPVK---SFDFENLLDKMNIRQQQRQQLVFIFDDC 467
Query: 420 QLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLR 479
+ + W + ++ + VVF+++ LD LP +SR QK+ FPK+KD DI + L+
Sbjct: 468 DTMSTDCWNALSKIVDRAPRRVVFILVCSSLDVLPHIIVSRCQKFFFPKLKDADIINSLQ 527
Query: 480 RICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDEL 539
I +E I+ ++ AL +A++S+GS+RDAEM L+QLSLLG ++++ L E++G++SD++L
Sbjct: 528 LIASKEEIDIEKDALKLVASRSDGSLRDAEMTLEQLSLLGTRVSVPLVQEMVGLISDEKL 587
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
+DLLDLALS+DT NTV R +M + ++P+ L+SQLA +I DILAG + ++ FF
Sbjct: 588 VDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKDQCKRKFF 647
Query: 600 GKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCL 658
+ S+ DM+KL +ALK LSE+EKQLR+S + TWLT ALLQL+ D + L
Sbjct: 648 RRQPLSKEDMEKLKQALKTLSESEKQLRVSSDKLTWLTAALLQLAP--------DKQYLL 699
Query: 659 RYAHDKDGD-SHCTISPRDSFKHLVRGSCVGDKANKLGALEDY----KGTLESIWKTATE 713
++ D +H I D V G+ + G+++ + + ++E IW E
Sbjct: 700 PHSSSADASFNHTPIMDSDPSNDAVAGT------RRDGSMQGFSCKNRPSVEDIWLAVIE 753
Query: 714 LCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCN 773
+ N LK FL K+GK+ S+ + V +L F+ S AE I ++VLG
Sbjct: 754 KVRVNGLKEFLYKEGKIFSISIGSAPTV-QLLFNSPIAKSTAENFKDNILKAFEAVLGSP 812
Query: 774 VEIRLLCAPVSAKENKPSFSLFSCSRWVQQSRSTTERETDSDYSDYF----SEKPMIRAR 829
V + + +K+ + L S Q S ER +S S+ SE PM R R
Sbjct: 813 VTLEFR---IESKKQPKNVDLSSL-----QGLSNGERFRESGRSEIVEVAESESPMTRVR 864
Query: 830 HTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGN 862
+S +Q K + + ++ +EGN
Sbjct: 865 RKHLEASQNQNQNQSIVRGKVSLAQVIKQAEGN 897
>gi|307136186|gb|ADN34025.1| DNA polymerase III gamma-tau subunit [Cucumis melo subsp. melo]
Length = 1170
Score = 336 bits (861), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 205/535 (38%), Positives = 297/535 (55%), Gaps = 53/535 (9%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+QK+ P F +LVGQ++V ++L +A+ + V Y+F+GP GTGKTS +RIFA ALNC
Sbjct: 456 NLTQKYMPRTFKDLVGQHLVAQALSNAVLKKKVGLLYVFYGPHGTGKTSCARIFARALNC 515
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
SLE KPCGLC C + G+SR+++EV V + + L+ S++ +FI
Sbjct: 516 QSLEHSKPCGLCNSCVGYDMGKSRNIREVVPVSNLDFESITELLDHMIASQLPSQYTVFI 575
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
D+C W+ + ++ + +VFV++ LD LP +SR QK+ FPK+KD D+
Sbjct: 576 FDDCDSFSANCWSAITKVIDRAPRRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVI 635
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L+ I +E + D+ AL I ++S+GS+RDAEM L+QLSLLG++I++ L EL+G++S
Sbjct: 636 HTLQWIATQENLEIDKDALKLITSRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLIS 695
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
D++L+DLLDLALS+DT NTV R ++ S ++PM L+SQ+A +I DILAG R
Sbjct: 696 DEKLVDLLDLALSADTVNTVKHLRLIIESGVEPMALMSQIATVITDILAGSYDFKKERPR 755
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS-------SSES 647
+ FF + S+ DM+KL +ALK LSE EKQLRMS + TWLT ALLQL+ SS +
Sbjct: 756 RKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLSSSA 815
Query: 648 SLDLNDSKLCLRYAHDKDG----DSHCTISP--------------RDSFKHLV------- 682
N S L L + D H IS DSF + +
Sbjct: 816 ETSFNHSPLALNNVSGRGASRNVDQHGQISAGEKGLPTDVKFAGHSDSFDNRISKGISLD 875
Query: 683 ----RGSCVGDKANKLGALED--------YKGT----LESIWKTATELCQSNSLKTFLRK 726
G CV + +G D GT +E IW + NS+K FL +
Sbjct: 876 RKRHSGVCVSPQ-RTIGTATDLMKSSGKQVSGTTHKAIEEIWLEVLGKIRINSIKEFLIQ 934
Query: 727 QGKLSSLHVNHGLA-VAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLC 780
+G L+S V+ G A L F+ + S+AEK + I +S LG +V I + C
Sbjct: 935 EGTLAS--VSFGAAPTVRLIFNSHNAKSKAEKLREQILQAFESALGSSVIIEIRC 987
>gi|356549172|ref|XP_003542971.1| PREDICTED: uncharacterized protein LOC100809005 [Glycine max]
Length = 1101
Score = 336 bits (861), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 204/512 (39%), Positives = 295/512 (57%), Gaps = 22/512 (4%)
Query: 273 AHYGRSG--HKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTS 330
A RSG KL N S + SL+QK+ P F +++GQN+V ++L +A+ + V
Sbjct: 432 ASEARSGDQRKLRGNRHSRHQ----SLTQKYMPQTFRDMIGQNLVAQALSNAVMKRKVGL 487
Query: 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRIN 390
Y+F+GP GTGKTS +RIFA ALNC S E KPCG C C G+SR+++EV V
Sbjct: 488 LYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCVAHDMGKSRNIREVGPVSNF 547
Query: 391 RSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450
+ + L+ + L S +++FI D+C L + W + ++ + + VVF++++ L
Sbjct: 548 DFEGIMDLLDNMTLSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRVPRRVVFILVSSSL 607
Query: 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEM 510
D LP +SR QK+ FPK+KD DI L+ I +E + D+ AL IA++S+GS+RDAEM
Sbjct: 608 DVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEGLEIDKDALKLIASRSDGSLRDAEM 667
Query: 511 LLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ 570
L+QLSLLG++I++ L EL+G++SD++L+DLLDLALS+DT NTV R +M + ++P+
Sbjct: 668 TLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA 727
Query: 571 LISQLANLIMDILAGKC-LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSK 629
L+SQLA +I DILAG RK F + S+ DM+KL +ALK LSE EKQLRMS
Sbjct: 728 LMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSN 787
Query: 630 HQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGD 689
+ TWLT ALLQL+ D + L + D + +P +H +
Sbjct: 788 DKLTWLTAALLQLAP--------DQQYVLPTSSDNSFNHRSGFTP----QHAHSQTTDKI 835
Query: 690 KANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLA-VAELEFHH 748
+ ++ L +E IW E Q LK FL K+GKL S V+ G A +L F
Sbjct: 836 RMSERQILGKNHKEIEEIWLEVLERIQVTGLKEFLFKEGKLIS--VSFGAAPTVQLMFSS 893
Query: 749 RDYVSRAEKSWKLIASTLQSVLGCNVEIRLLC 780
+ S AEK I +SVLG ++ I + C
Sbjct: 894 QLTKSTAEKFRGHILQAFESVLGSSITIEIRC 925
>gi|449431904|ref|XP_004133740.1| PREDICTED: uncharacterized protein LOC101212356 [Cucumis sativus]
gi|449478091|ref|XP_004155220.1| PREDICTED: uncharacterized protein LOC101227259 [Cucumis sativus]
Length = 1267
Score = 335 bits (860), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 206/427 (48%), Positives = 277/427 (64%), Gaps = 18/427 (4%)
Query: 231 VNQSHHGCGLSCCWSRTPRSRQSNLSS-DLEDNPLLSGEIGETAHYGRSGHKLI--NNEI 287
N + G G S R+ +N DLE L G ++ G +++ N E+
Sbjct: 408 TNSADGGVGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSHEGLEIVALNGEV 467
Query: 288 --STYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSA 345
E+ S SQK++P FF+EL+GQN+VV+SL++AISRG + YLF GPRGTGKT+A
Sbjct: 468 EGGGTPESTRSFSQKYKPMFFNELIGQNIVVQSLINAISRGRIAPVYLFQGPRGTGKTAA 527
Query: 346 SRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK----- 400
+RIFAAALNCL+ E+ KPCG CREC F +G+ +D+ EVD D++ +K
Sbjct: 528 ARIFAAALNCLAPEENKPCGYCRECTDFMAGKQKDLLEVDGTNKKGIDKIRYQLKLLSSG 587
Query: 401 --SAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSAL 458
SAF R+KIF++DEC LL + W L E Q VVF+ IT +LD +PR+
Sbjct: 588 QSSAFF-----RYKIFLVDECHLLPSKAWLAFLKLFEEPPQRVVFIFITTDLDSVPRTIQ 642
Query: 459 SRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL 518
SR QKY F KIKD D+ RL+RI +E ++ D ALD IA ++GS+RDAE +L+QLSLL
Sbjct: 643 SRCQKYLFNKIKDCDMVERLKRISADENLDVDLDALDLIAMNADGSLRDAETMLEQLSLL 702
Query: 519 GKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL 578
GK+IT SL EL+GIVSD++LL+LL LA+SS+T+ TV RARELM S +DP+ L+SQLA+L
Sbjct: 703 GKRITTSLVNELVGIVSDEKLLELLALAMSSNTAETVKRARELMDSGVDPLVLMSQLASL 762
Query: 579 IMDILAGKC-LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
IMDI+AG + D + F G+ SEA++++L ALK LSE EKQLR+S ++TW T
Sbjct: 763 IMDIIAGTYNIIDTKDGASIFGGRSLSEAEVERLKHALKFLSEAEKQLRVSSERSTWFTA 822
Query: 638 ALLQLSS 644
LLQL S
Sbjct: 823 TLLQLGS 829
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L SIW E C S +L+ L GKL S+ + G +A + F D SRAE+ I
Sbjct: 942 LNSIWVHCIERCHSKTLRQLLYAHGKLLSISESEGTLIAYVAFEDVDIKSRAERFLSSIT 1001
Query: 764 STLQSVLGCNVEIRLLCAP 782
++++ VL CNVE+R++ P
Sbjct: 1002 NSMEMVLRCNVEVRIILLP 1020
>gi|224079031|ref|XP_002305724.1| predicted protein [Populus trichocarpa]
gi|222848688|gb|EEE86235.1| predicted protein [Populus trichocarpa]
Length = 1188
Score = 335 bits (859), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 217/554 (39%), Positives = 306/554 (55%), Gaps = 60/554 (10%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+QK+ P F +LVGQN+V ++L +A+SR V Y+F+GP GTGKTS +RIFA ALNC
Sbjct: 449 NLTQKYMPRTFRDLVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNC 508
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
SLE KPCG C C G+SR+++EV V + + L+ + + S +++FI
Sbjct: 509 QSLEHPKPCGFCNSCISHDMGKSRNIREVGPVSNFDFESIMDLLDNMIVYQIPSLYRVFI 568
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
D+C L + W+ +L ++ + VVFV++ LD LP +SR QK+ FPK+KD DI
Sbjct: 569 FDDCDSLSPDCWSAILKVIDRAPRRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADII 628
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L+ I +E I+ D+ AL IA++S+GS+RDAEM L+QLSLLG+KI++ L EL+G++S
Sbjct: 629 YTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLIS 688
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-LEDCSEA 594
D++L+DLLDLALS+DT NTV R +M + ++P+ L+SQLA +I DILAG
Sbjct: 689 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKERPR 748
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL----------SS 644
RK F K S+ DM+KL +ALK LSE EKQLRMS + TWLT ALLQL SS
Sbjct: 749 RKFFRRKPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPSSS 808
Query: 645 SESSLD---LNDSKLCLRYAHDKDGDSHCTISPRDSFKHL------------------VR 683
+E+S + L + + R K G+ + RD H+
Sbjct: 809 TETSFNHSPLAQNNMGGRDISRKGGEHEMPNNGRDLPMHVRLESLPGGTSADFRNNGSTN 868
Query: 684 GSCVGDKANKLGAL----------------------EDYKGTLESIWKTATELCQSNSLK 721
G+ + K N + + +KG E IW E Q NS++
Sbjct: 869 GTSIDRKRNAASVMAPQWTPVQTSDAIRVNSRQVSGKSHKG-YEEIWLEVLEKIQINSMR 927
Query: 722 TFLRKQGKLSSLHVNHGLA-VAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLC 780
FL ++GKL S V+ G A +L F +AEK I +SVLG V I + C
Sbjct: 928 EFLYQEGKLIS--VSFGAAPTVQLIFSSHFTKLKAEKFRAHILQAFESVLGSPVTIEIRC 985
Query: 781 APVSAKENKPSFSL 794
S KE F +
Sbjct: 986 E--SNKETSAGFRV 997
>gi|147856456|emb|CAN80768.1| hypothetical protein VITISV_013865 [Vitis vinifera]
Length = 785
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/312 (54%), Positives = 230/312 (73%), Gaps = 2/312 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP FFDEL+GQN+VV+SL++AISRG + YLF GPRGTGKTS +RIF AALNC
Sbjct: 448 SLSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNC 507
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFL--PPFSSRFKI 413
L++ + KPCG+CREC+ F SG+SR +E+D DR+ L+K+ P S +K+
Sbjct: 508 LAVGETKPCGICRECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYKV 567
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
F+IDEC LL +TW L LE VVF+ ITP+L+ +PR+ LSR QKY F KIK+GD
Sbjct: 568 FVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGD 627
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I +RLR+I +E ++ + AL+ IA ++GS+RDAE +LDQLSLLGK+IT SL +L+G+
Sbjct: 628 IVARLRKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLLGKRITTSLVNDLVGV 687
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
VSD++LL+LL+LA+SSDT+ TV RARELM S +DP+ L+SQLA+LIMDI+AG ++
Sbjct: 688 VSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVDAQ 747
Query: 594 ARKNFFGKHTSE 605
+FFG + E
Sbjct: 748 QSDSFFGGRSRE 759
>gi|334186680|ref|NP_193617.3| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332658694|gb|AEE84094.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 1097
Score = 330 bits (845), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 208/538 (38%), Positives = 307/538 (57%), Gaps = 39/538 (7%)
Query: 261 DNPLLSGEIGETAHYGRSGHKLIN-----NEISTYSETPWSLSQKFRPNFFDELVGQNVV 315
D+ L + E + A GRSG K N + + SL++K+ P F +L+GQN+V
Sbjct: 392 DSLLKNDEDSDLASEGRSGEKKHKKKSHVNARHRHRQQHQSLTEKYTPKTFRDLLGQNLV 451
Query: 316 VRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375
V++L +A++R + Y+FHGP GTGKTS +RIFA ALNC S+E KPCG C C
Sbjct: 452 VQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALNCHSMEQPKPCGTCSSCVSHDM 511
Query: 376 GRSRDVKEVDSVRINRSDRV-----GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV 430
G+S +++EV V +++ G++M S+ P ++FI D+C L + W +
Sbjct: 512 GKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSP------RVFIFDDCDTLSSDCWNAL 565
Query: 431 LNSLENIS-QHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINF 489
++ + +HVVF+++ LD LP +SR QK+ FPK+KD DI L+ I +E I
Sbjct: 566 SKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDADIVYSLQWIASKEEIEI 625
Query: 490 DQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSS 549
D+ AL IA++S+GS+RDAEM L+QLSLLG++I++ L EL+G+VSD++L+DLLDLALS+
Sbjct: 626 DKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLVSDEKLVDLLDLALSA 685
Query: 550 DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADM 608
DT NTV R +M + ++P+ L+SQLA +I DILAG + ++ FF + + DM
Sbjct: 686 DTVNTVKNLRTIMETSVEPLALMSQLATVITDILAGSYDFTKDQHKRKFFRRQPLPKEDM 745
Query: 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDS 668
+KL +ALK LSE EKQLR+S + TWLT ALLQL+ ++ L L D G
Sbjct: 746 EKLRQALKTLSEAEKQLRVSNDKLTWLTAALLQLAPDQNYL------LQRSSTADTGG-- 797
Query: 669 HCTISPRDSFKHLVRGS--CVGDKANKL----GALEDYKGTLESIWKTATELCQSNSLKT 722
R+S H + S G +++ L G + +E IW E + N L+
Sbjct: 798 ------RESSDHHLDPSSDAAGGRSSGLDRRRGDSRKNRPAVEEIWLEVIEKLRVNGLRE 851
Query: 723 FLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLC 780
FL K+G++ SL++ V L F S AEK I ++VL V I + C
Sbjct: 852 FLYKEGRIVSLNLGSAPTV-HLMFSSPLTKSTAEKFRSHIMQAFEAVLESPVTIEIRC 908
>gi|326530674|dbj|BAK01135.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1088
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 165/349 (47%), Positives = 239/349 (68%), Gaps = 2/349 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL+QK+ P F ++VGQ++VV++L +AI + + S Y+F+GP GTGKTS +R+FA ALNC
Sbjct: 344 SLTQKYAPRTFKDVVGQSLVVQALSNAILKRKIGSVYVFYGPHGTGKTSCARVFAKALNC 403
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S E KPC C C + G+SR + E+ V D + ++ + L P + ++FI
Sbjct: 404 HSPEHPKPCDTCASCIAHNLGKSRSLMEIGPVGNIDLDSIVDILDNVILSPLPAHHRVFI 463
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+D+C L +TW+ + +E + VVFV+I+P LD LP +SR QK+ FPK+K+ DI
Sbjct: 464 VDDCNTLPPDTWSVISKVVERAPRRVVFVLISPNLD-LPHIIMSRCQKFFFPKLKECDIV 522
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ L+ IC + ++ D+ AL IA++S+GS+RDAEM LDQLSLLG++IT+ L EL G+VS
Sbjct: 523 NTLQWICTSDGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRITMPLVQELAGLVS 582
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
DD+L++LLDLALS+DT+NTV R++ + ++P+ L+SQLA +I DILAG R
Sbjct: 583 DDKLVNLLDLALSADTANTVKALRDITETGVEPLSLMSQLATIITDILAGTYTFAQERIR 642
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ FF + T S+ DM+KL +ALK LSE EKQLR+S + TWLT ALLQL+
Sbjct: 643 RKFFKRPTLSKEDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLA 691
>gi|168053850|ref|XP_001779347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669263|gb|EDQ55854.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 356
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/360 (47%), Positives = 249/360 (69%), Gaps = 9/360 (2%)
Query: 289 TYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRI 348
++SE P +L+QK+RP F+E+VGQNV V+SL +AI +G V YLF GPRGTGKTSA+R+
Sbjct: 1 SHSEGPRTLNQKYRPKNFNEIVGQNVAVKSLSTAIVKGKVAPVYLFMGPRGTGKTSAARV 60
Query: 349 FAAALNCLSLE-DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPF 407
FAA LNCLS + ++PCG+CREC RS DV+++D+ + + ++M S F P
Sbjct: 61 FAAGLNCLSPDRARRPCGICRECGTMKLNRSADVRQIDAASNIDAASMRAMMGS-FTP-- 117
Query: 408 SSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFP 467
+++K+FI++ C LL + W L LE ++VVF++IT + +++P +A SR QK+HF
Sbjct: 118 HAQYKVFIVEGCDLLSSDIWNAFLKVLEEPPRNVVFILITTDAERIPSTAFSRCQKFHFS 177
Query: 468 KIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527
K+KD DI SRL + +E ++ + ALD IAA+S+GS+RDAE+ LDQL LL + +++S
Sbjct: 178 KLKDADIVSRLELLATKEDLHVEVGALDLIAARSDGSLRDAEIFLDQLCLLDRNVSISSV 237
Query: 528 YELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC 587
+EL+G++ +++ L+LLD ALS+D +TV RE++ S ++P+ L+SQL LI DILAG
Sbjct: 238 HELVGLLPNNKTLELLDYALSADAVHTVRTMREVLISGVEPLSLVSQLGALITDILAGS- 296
Query: 588 LEDCSEARK-NFFGKHTSEADMQ---KLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ EARK FF ++ E+ Q +L ALKILSE EKQLR+S Q TWLT ALLQ +
Sbjct: 297 FDLHQEARKEGFFNRNLCESVKQEHLRLREALKILSEAEKQLRVSTDQATWLTAALLQFA 356
>gi|218189003|gb|EEC71430.1| hypothetical protein OsI_03625 [Oryza sativa Indica Group]
Length = 815
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 222/554 (40%), Positives = 325/554 (58%), Gaps = 50/554 (9%)
Query: 253 SNLSSDLEDNPLLSGEIGETA---HYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDEL 309
SN +S++E + L G G + +GR H+ SL+QKF P F ++
Sbjct: 85 SNQTSEMESDLLSEGRSGHKSRGSQHGRGRHR--------------SLTQKFAPKAFKDV 130
Query: 310 VGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369
VGQ++VV++L +A+ R + Y+F+GP GTGKTS +R+FA ALNC S E +PC C
Sbjct: 131 VGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCTS 190
Query: 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWAT 429
C + G+SR V E+ V D + ++ + L P S +++FI D+C L +TW+
Sbjct: 191 CIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSL 250
Query: 430 VLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINF 489
+ ++ + VVF++++P LD LP LSR QK+ FPK+K+ DI + L+ I E+++
Sbjct: 251 ISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIVNTLQWISTSESLDV 309
Query: 490 DQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSS 549
D+ AL IA++S+GS+RDAEM LDQLSLLG++I+LSL EL+G+VSDD+L+DLLDLALS+
Sbjct: 310 DRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVGLVSDDKLVDLLDLALSA 369
Query: 550 DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADM 608
DT NTV R++ + +DP+ L+SQLA +I DILAG R+ FF + T S+ DM
Sbjct: 370 DTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRERLRRKFFKRPTLSKDDM 429
Query: 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL---------SSSESSLD-------LN 652
+KL +ALK LSE EKQLR+S +TTWLT ALLQL SSS +SL+
Sbjct: 430 EKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLAPDKQYVLPSSSSTSLNHGVLAGSFP 489
Query: 653 DSKLCLRYAHDKDGDSHCTISPRD-------SFKHLVRGSCVGDKANKLGALEDYKGTLE 705
D + + A + +G+ T S R+ S HL+ S +AN+ + K E
Sbjct: 490 DRDMAIHSALEHNGNMAST-SYRERRPVEHTSNSHLL--STSAPRANEQS--RNSKIENE 544
Query: 706 SIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIAST 765
IW E QS++L+ + K+G+LSS+ + V +L F R S+AE + I
Sbjct: 545 LIWHAVLESIQSDTLRKIMAKEGRLSSVSLGTAPTV-QLIFSSRVNKSKAENYREQILQA 603
Query: 766 LQSVLGCNV--EIR 777
+SVL + EIR
Sbjct: 604 FESVLRSAIILEIR 617
>gi|168028953|ref|XP_001766991.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681733|gb|EDQ68157.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1473
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 167/356 (46%), Positives = 247/356 (69%), Gaps = 5/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
S+SQK+RP F ++VGQ +VV+SL +AI++G V YLF GPRG+GKT+ +R+FAAAL C
Sbjct: 690 SMSQKYRPKSFKDMVGQTLVVKSLTTAITKGKVAPVYLFAGPRGSGKTTCARVFAAALVC 749
Query: 356 LSLED-QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
L+ E ++PCGLCRECA + RSRDVKE+D D + L+ LP + R ++F
Sbjct: 750 LNTEPHRRPCGLCRECATMTLNRSRDVKEIDVSTCPDLDHMRLLLN---LPSSNGRQQVF 806
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
I++ C L+ E W L L++ ++VVF++IT L++LP SA SR QKYHF K+K+ +I
Sbjct: 807 ILEGCDFLNTELWTAFLKFLDDPPRNVVFILITTNLERLPLSATSRCQKYHFGKLKESEI 866
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+RL+ + +E ++ D+AAL IA+++ GS+RDAEM+LDQLSLL + ITL++ EL G++
Sbjct: 867 MTRLQGLAEKEHLDIDEAALFLIASRAEGSLRDAEMMLDQLSLLDQTITLAMVQELSGLI 926
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+++L++LLD+AL++DT NTV REL+ + +D + L++QLA+LI +ILAG
Sbjct: 927 PEEKLINLLDMALAADTVNTVKGMRELLDAGVDALSLVAQLASLIANILAGAIDLRRETR 986
Query: 595 RKNFFGKHTS-EADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+K FF ++ + Q+L +ALK+L+E EKQLR S + TWLT ALLQ + S L
Sbjct: 987 KKGFFYRNMPRREEQQRLRQALKVLAECEKQLRASNDRPTWLTAALLQFAPDRSYL 1042
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHV--NHGLAVAELEFHHRDYVSRAEKSWKL 761
+E IW + C+SN L+ L QG L +L V + AVA +EF + +RAE+
Sbjct: 1181 MEDIWGKVLDGCRSNVLRQLLSSQGTLMALSVARDETFAVAHVEFRSPGHKARAERLRSS 1240
Query: 762 IASTLQSVLGCNVEIRLL--CAP 782
Q LGC VE++L C P
Sbjct: 1241 TCHAFQMALGCPVELKLSLECPP 1263
>gi|356557765|ref|XP_003547181.1| PREDICTED: uncharacterized protein LOC100793832 [Glycine max]
Length = 1191
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 210/561 (37%), Positives = 304/561 (54%), Gaps = 60/561 (10%)
Query: 273 AHYGRSG--HKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTS 330
A RSG KL N S + SL+QK+ P F ++VGQN+V ++L +A+ + V
Sbjct: 436 ASEARSGDQRKLRGNRHSRHQ----SLTQKYMPRTFRDMVGQNLVAQALSNAVMKKKVGL 491
Query: 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRIN 390
Y+F+GP GTGKTS++RIFA ALNC S E KPCG C C G+SR+++EV V
Sbjct: 492 LYVFYGPHGTGKTSSARIFARALNCNSSEHPKPCGFCNYCVAHDMGKSRNIREVGPVSNF 551
Query: 391 RSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450
+ + L+ + + S +++FI D+C L + W + ++ + VVF++++ L
Sbjct: 552 DFESIMELLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRAPRRVVFILVSSSL 611
Query: 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEM 510
D LP +SR QK+ FPK+KD DI L I +E + D+ AL IA++S+GS+RDAEM
Sbjct: 612 DVLPHIIISRCQKFFFPKLKDADIIYTLEWIATKEGLEIDKDALKLIASRSDGSLRDAEM 671
Query: 511 LLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ 570
L+QLSLLG++I++ L EL+G++SD++L+DLLDLALS+DT NTV R +M + ++P+
Sbjct: 672 TLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA 731
Query: 571 LISQLANLIMDILAGKCLEDCSEARKNFFGKH-TSEADMQKLSRALKILSETEKQLRMSK 629
L+SQLA +I DILAG R+ FF + S+ DM+KL +ALK LSE EKQLRMS
Sbjct: 732 LMSQLATVITDILAGTYDFRKDRRRRKFFRRPLLSKEDMEKLRQALKTLSEAEKQLRMSN 791
Query: 630 HQTTWLTVALLQLSSSESSL-------DLNDSKLCLRYAHDKDGDSHCTISPRD------ 676
+ TWLT ALLQL+ + + N S L+ A ++ + T +P D
Sbjct: 792 DKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFALKDADAREA-ARLTGNPVDIPNKGR 850
Query: 677 ------SFKHLVRGSCVGDKANKLGA------------------------------LEDY 700
+++ GS LG+ L
Sbjct: 851 RLSMDARIENVHAGSSADGMTRGLGSEKKRHSVSGFTPQHANSQATEKIRMSERQILGIN 910
Query: 701 KGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLA-VAELEFHHRDYVSRAEKSW 759
+ +E IW E Q LK FL K+GKL S V+ G A +L F + S AEK
Sbjct: 911 RTKIEEIWLEVLERIQITGLKEFLFKEGKLIS--VSFGAAPTVQLMFSSQLTKSTAEKFR 968
Query: 760 KLIASTLQSVLGCNVEIRLLC 780
I +SVLG ++ I + C
Sbjct: 969 GHILQAFESVLGSSITIEIRC 989
>gi|222625938|gb|EEE60070.1| hypothetical protein OsJ_12890 [Oryza sativa Japonica Group]
Length = 1050
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 222/554 (40%), Positives = 324/554 (58%), Gaps = 50/554 (9%)
Query: 253 SNLSSDLEDNPLLSGEIGETA---HYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDEL 309
SN +S++E + L G G + +GR H+ SL+QKF P F ++
Sbjct: 319 SNQTSEMESDLLSEGRSGHKSRGSQHGRGRHR--------------SLTQKFAPKTFKDV 364
Query: 310 VGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369
VGQ++VV++L +A+ R + Y+F+GP GTGKTS +R+FA ALNC S E +PC C
Sbjct: 365 VGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCTS 424
Query: 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWAT 429
C + G+SR V E+ V D + ++ + L P S +++FI D+C L +TW+
Sbjct: 425 CIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSL 484
Query: 430 VLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINF 489
+ ++ + VVF++++P LD LP LSR QK+ FPK+K+ DI + L+ I E+++
Sbjct: 485 ISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIVNTLQWISTSESLDV 543
Query: 490 DQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSS 549
D+ AL IA++S+GS+RDAEM LDQLSLLG++I+LSL EL+G+VSDD+L+DLLDLALS+
Sbjct: 544 DRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVGLVSDDKLVDLLDLALSA 603
Query: 550 DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADM 608
DT NTV R++ + +DP+ L+SQLA +I DILAG R+ FF + T S+ DM
Sbjct: 604 DTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRERLRRKFFKRPTLSKDDM 663
Query: 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL---------SSSESSLD-------LN 652
+KL +ALK LSE EKQLR+S +TTWLT ALLQL SSS +SL+
Sbjct: 664 EKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLAPDKQYVLPSSSSTSLNHGVLAGSFP 723
Query: 653 DSKLCLRYAHDKDGDSHCTISPRD-------SFKHLVRGSCVGDKANKLGALEDYKGTLE 705
D + + A + +G+ T S R+ S HL+ S +AN+ + K E
Sbjct: 724 DRDMAIHSALEHNGNMAST-SYRERRPVEHTSNSHLL--STSAPRANEQS--RNSKIENE 778
Query: 706 SIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIAST 765
IW E QS++L+ + K+G+LSS+ + V +L F R S+AE I
Sbjct: 779 LIWHAVLESIQSDTLRKIMAKEGRLSSVSLGTAPTV-QLIFSSRVNKSKAENYRGQILQA 837
Query: 766 LQSVLGCNV--EIR 777
+SVL + EIR
Sbjct: 838 FESVLRSAIILEIR 851
>gi|242058597|ref|XP_002458444.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
gi|241930419|gb|EES03564.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
Length = 1026
Score = 325 bits (834), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 213/552 (38%), Positives = 321/552 (58%), Gaps = 45/552 (8%)
Query: 253 SNLSSDLEDNPLLSGEIGETAH---YGRSGHKLINNEISTYSETPWSLSQKFRPNFFDEL 309
SN +S+++ + L + G+ +H +GR H+ SL+QKF P F ++
Sbjct: 315 SNQTSEMDSDLLSESQSGQKSHASQHGRGRHR--------------SLTQKFAPKTFKDV 360
Query: 310 VGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369
VGQ++VV++L +AI R + Y+F+GP GTGKTS +R+FA ALNCLS E +PC C
Sbjct: 361 VGQSLVVQALSNAILRRKIGLVYVFYGPHGTGKTSCARVFAKALNCLSSEHPRPCDSCTS 420
Query: 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWAT 429
C + G+SR + E+ V D + ++ + L P S +++FI D+C L +TW+
Sbjct: 421 CIAHNLGKSRSLMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIFDDCDTLPPDTWSA 480
Query: 430 VLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINF 489
+ ++ + VVF++++P L+ LP LSR QK+ FPK+++ DI + L+ IC E+++
Sbjct: 481 ISKVVDRAPRRVVFILVSPNLE-LPHIILSRCQKFFFPKLRESDIVNTLQWICTSESLDV 539
Query: 490 DQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSS 549
D+ AL IA++S+GS+RDAEM LDQLSLLG++I+LSL EL+G+VSDD+L+DLLDLALS+
Sbjct: 540 DKDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVGLVSDDKLVDLLDLALSA 599
Query: 550 DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADM 608
DT NTV R++ + ++P+ L+SQLA +I DILAG R+ FF + T S+ DM
Sbjct: 600 DTVNTVKTLRDITETGVEPLALMSQLATIITDILAGSYAFTRERPRRKFFKRPTLSKEDM 659
Query: 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL--------DLNDSKLCLRY 660
+KL +ALK LSE EKQLR+S + TWLT ALLQL+ + L LN L +
Sbjct: 660 EKLRQALKTLSEAEKQLRVSSDKATWLTAALLQLAPDKQYLLPSSSTSTSLNHGVLVGSF 719
Query: 661 ----------AHDKDGDSHCTISPRDSFKHLVRGSCVGD---KANKLGALEDYKGTLESI 707
K + + R + +H G + +AN+ GA + K E I
Sbjct: 720 PDRVIGRTSAVEHKGNVAGTSYGERRTVEHTENGHVLSTSSVRANE-GA-KHRKAENEMI 777
Query: 708 WKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQ 767
W+ E QS+SL+ + K+ +L+S+ + V +L F R S+AE I +
Sbjct: 778 WQAVLESIQSDSLRKMMAKEARLNSVSLGTAPTV-QLIFSSRINKSKAENYRAQILQAFE 836
Query: 768 SVLGCNV--EIR 777
SVL + EIR
Sbjct: 837 SVLRAAIILEIR 848
>gi|4539401|emb|CAB37467.1| putative protein [Arabidopsis thaliana]
gi|7268676|emb|CAB78884.1| putative protein [Arabidopsis thaliana]
Length = 1057
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 208/552 (37%), Positives = 307/552 (55%), Gaps = 53/552 (9%)
Query: 261 DNPLLSGEIGETAHYGRSGHKLIN-----NEISTYSETPWSLSQKFRPNFFDELVGQNVV 315
D+ L + E + A GRSG K N + + SL++K+ P F +L+GQN+V
Sbjct: 392 DSLLKNDEDSDLASEGRSGEKKHKKKSHVNARHRHRQQHQSLTEKYTPKTFRDLLGQNLV 451
Query: 316 VRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375
V++L +A++R + Y+FHGP GTGKTS +RIFA ALNC S+E KPCG C C
Sbjct: 452 VQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALNCHSMEQPKPCGTCSSCVSHDM 511
Query: 376 GRSRDVKEVDSVRINRSDRV-----GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV 430
G+S +++EV V +++ G++M S+ P ++FI D+C L + W +
Sbjct: 512 GKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSP------RVFIFDDCDTLSSDCWNAL 565
Query: 431 LNSLENIS-QHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINF 489
++ + +HVVF+++ LD LP +SR QK+ FPK+KD DI L+ I +E I
Sbjct: 566 SKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDADIVYSLQWIASKEEIEI 625
Query: 490 DQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL--------------IGIVS 535
D+ AL IA++S+GS+RDAEM L+QLSLLG++I++ L EL +G+VS
Sbjct: 626 DKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVSIVLSHHHIKQLKVGLVS 685
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
D++L+DLLDLALS+DT NTV R +M + ++P+ L+SQLA +I DILAG + +
Sbjct: 686 DEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLATVITDILAGSYDFTKDQHK 745
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDS 654
+ FF + + DM+KL +ALK LSE EKQLR+S + TWLT ALLQL+ ++ L
Sbjct: 746 RKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSNDKLTWLTAALLQLAPDQNYL----- 800
Query: 655 KLCLRYAHDKDGDSHCTISPRDSFKHLVRGS--CVGDKANKL----GALEDYKGTLESIW 708
L D G R+S H + S G +++ L G + +E IW
Sbjct: 801 -LQRSSTADTGG--------RESSDHHLDPSSDAAGGRSSGLDRRRGDSRKNRPAVEEIW 851
Query: 709 KTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQS 768
E + N L+ FL K+G++ SL++ V L F S AEK I ++
Sbjct: 852 LEVIEKLRVNGLREFLYKEGRIVSLNLGSAPTV-HLMFSSPLTKSTAEKFRSHIMQAFEA 910
Query: 769 VLGCNVEIRLLC 780
VL V I + C
Sbjct: 911 VLESPVTIEIRC 922
>gi|224116784|ref|XP_002317391.1| predicted protein [Populus trichocarpa]
gi|222860456|gb|EEE98003.1| predicted protein [Populus trichocarpa]
Length = 1190
Score = 318 bits (814), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 168/379 (44%), Positives = 242/379 (63%), Gaps = 9/379 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+Q++ P F +LVGQN+ ++L +A R V Y+F+GP GTGKTS +RIF+ ALNC
Sbjct: 453 NLTQRYMPRTFRDLVGQNLAAQALSNAAVRRKVGFLYVFYGPHGTGKTSCARIFSRALNC 512
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
SLE KPCG C C G+SR+++EV V + L+ + + S++++FI
Sbjct: 513 QSLEHPKPCGYCNSCISHDMGKSRNIREVGPVSNFDFKSIIDLLDNMIISQTPSQYRVFI 572
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
D+C L + W+ + ++ + VVFV++ LD LP +SR QK+ FPK+KD DI
Sbjct: 573 FDDCDTLAPDCWSAISKVIDRAPRRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADII 632
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L+ I +E I+ D+ AL IA++S+GS+RDAEM L+QLSLLG+KI++ L EL+G++S
Sbjct: 633 YTLQWISSKEDIDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLIS 692
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
D++L+DLLDLA+S+DT NTV R +M + ++P+ L+SQLA +I DILAG R
Sbjct: 693 DEKLVDLLDLAISADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKERPR 752
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--------SSE 646
+ FF ++ S+ DM+KL +ALK LSE EKQLRMS + TWLT ALLQL+ SS
Sbjct: 753 RKFFRRNPLSKDDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPSSS 812
Query: 647 SSLDLNDSKLCLRYAHDKD 665
+ N S L L +D
Sbjct: 813 TETSFNHSPLALNNMGGRD 831
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 705 ESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLA-VAELEFHHRDYVSRAEKSWKLIA 763
E IW E Q NS++ FL ++GKL S V+ G A +L F +AEK I
Sbjct: 916 EEIWLEVLEKIQINSMREFLYQEGKLIS--VSFGAAPTVQLIFSSHLTKLKAEKFRAHIL 973
Query: 764 STLQSVLGCNVEIRLLCAPVSAKENKPSFSLFSCSR 799
+SVLG V I + C KE F L + S+
Sbjct: 974 QAFESVLGSPVTIEIRCE--LNKETNAGFHLPAASK 1007
>gi|413951159|gb|AFW83808.1| hypothetical protein ZEAMMB73_506142, partial [Zea mays]
Length = 1039
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 205/533 (38%), Positives = 310/533 (58%), Gaps = 37/533 (6%)
Query: 266 SGEIGETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISR 325
SG+ + + +GR H+ SL+QKF P F ++VGQ++VV++L +AI R
Sbjct: 320 SGQKSQASQHGRGRHR--------------SLTQKFAPKTFKDVVGQSLVVQALSNAILR 365
Query: 326 GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVD 385
+ Y+F+GP GTGKTS +R+FA ALNCLS E +PC C C + G+SR + E+
Sbjct: 366 RKIGLVYVFYGPHGTGKTSCARVFAKALNCLSSEHPRPCDSCTVCIAHNLGKSRSLMEIG 425
Query: 386 SVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVM 445
V D + ++ + L P S +++FI D+C L +TW+ + ++ + VVF++
Sbjct: 426 PVGNIDIDGIVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSAISKVVDRAPRRVVFIL 485
Query: 446 ITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSI 505
++P L+ LP LSR QK+ FPK ++ DI + L+ IC E+++ D+ AL IA++S+GS+
Sbjct: 486 VSPNLE-LPHIILSRCQKFFFPKHRESDIVNTLQWICTSESLDVDKDALKLIASRSDGSL 544
Query: 506 RDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSK 565
RDAEM LDQLSLLG++I+L+L EL+G+VSDD+L+DLLDLALS+DT TV R++ +
Sbjct: 545 RDAEMTLDQLSLLGQRISLTLVQELVGLVSDDKLVDLLDLALSADTVKTVKTLRDITETG 604
Query: 566 IDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSETEKQ 624
++P+ L+SQLA +I DILAG + ++ FF + T S+ DM KL +ALKILSETEKQ
Sbjct: 605 VEPLALMSQLATIITDILAGSYAFNRERPKRKFFKRPTLSKEDMGKLRQALKILSETEKQ 664
Query: 625 LRMSKHQTTWLTVALLQLSSSESSL--------DLNDSKLCLRYAHDKDGDS-----HCT 671
LR+S +TTWLT ALLQL+ + L LN L + G S C
Sbjct: 665 LRVSSDKTTWLTAALLQLAPDKQYLLPSSSTSTSLNHGLLVGSFPDRGIGRSSAVEHKCN 724
Query: 672 IS----PRDSFKHLVRGSCVGDKANKLG-ALEDYKGTLESIWKTATELCQSNSLKTFLRK 726
++ + +H G + + K ++ K E IW+ E QS++L+ + K
Sbjct: 725 LAGTSYGEGTVEHTENGHVLSTSSVKGNEGTKNRKADNEMIWQAVLESIQSDTLRKMMAK 784
Query: 727 QGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNV--EIR 777
+ +L+S+ + V +L F R +AE I +SVL + EIR
Sbjct: 785 EARLNSVSLGTAPTV-QLIFSSRINKFKAENYRAQILQAFESVLHSAIILEIR 836
>gi|357130892|ref|XP_003567078.1| PREDICTED: uncharacterized protein LOC100837374 [Brachypodium
distachyon]
Length = 1063
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 203/505 (40%), Positives = 292/505 (57%), Gaps = 26/505 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL+QKF P F E+VGQ +VV++L +A+ R + Y+F+GP GTGKTS +R+FA ALNC
Sbjct: 338 SLTQKFAPRTFKEVVGQGLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNC 397
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S E +PC C C + G+SR + E+ V D + ++ + L P S +++FI
Sbjct: 398 HSAEHPRPCNSCTSCIAHNVGKSRSLMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFI 457
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
D+C L +TW+ + ++ + VVF++++P LD LP LSR QK+ FPK+K+ DI
Sbjct: 458 FDDCDTLPADTWSIISKVIDRSPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIV 516
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ LR I E+++ D+ AL IA++S+GS+RDAEM LDQLSLLG++I+LSL +L+G+VS
Sbjct: 517 NTLRWISTSESLDVDKDALRLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQQLVGLVS 576
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
DD+L+DLLDLALS+DT NTV R++ + ++P+ L+SQLA +I DILAG R
Sbjct: 577 DDKLVDLLDLALSADTVNTVKTLRDITEAGVEPLALMSQLATIITDILAGSYTFARERLR 636
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-------- 646
+ FF + T S+ DM+KL ALK LSE EKQLR+S + TWLT ALLQL+ +
Sbjct: 637 RKFFKRPTLSKDDMEKLRLALKTLSEAEKQLRVSNDKATWLTAALLQLAPDKQYTLPSSS 696
Query: 647 SSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGS------------CVGDKANKL 694
+S N L + H KD H I + G + A
Sbjct: 697 TSTSFNHGVLAGSFPH-KDVARHSAIEHNGNVASTSYGERRPIERTPNCHRLLASVAKAN 755
Query: 695 GALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSR 754
G + K E IW+ E QS+ L+ + K+GKL S+ + V ++ F R S+
Sbjct: 756 GRSKHNKTENEMIWQAVLESIQSDILRKMMAKEGKLRSVSLGTAPTV-QVIFSSRVNKSK 814
Query: 755 AEKSWKLIASTLQSVLGCNV--EIR 777
AE I +SVL + EIR
Sbjct: 815 AENFRGQIMQAFESVLHSAIILEIR 839
>gi|242085200|ref|XP_002443025.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor]
gi|241943718|gb|EES16863.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor]
Length = 1074
Score = 302 bits (773), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 192/541 (35%), Positives = 277/541 (51%), Gaps = 101/541 (18%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
P SLSQK+RP F E+VGQN+ +SL +AI+R + YLF GPRGTGKTS +RIF+AAL
Sbjct: 408 PRSLSQKYRPRAFPEIVGQNIAAQSLSNAIARERIAPAYLFQGPRGTGKTSTARIFSAAL 467
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS--SRF 411
NCL+ D KPCG+C +C F SG+ ++KEVD+ + L+++ LPP + SR+
Sbjct: 468 NCLTTGDNKPCGVCNQCTDFFSGKGTNLKEVDASNRKSISIIKHLLEN--LPPSAPLSRY 525
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+F++DEC + + W+ + L+ VVF+ IT + D LPR+ +SR QKY F KIKD
Sbjct: 526 KVFVVDECHMTPSKLWSAFMKFLDEPFPRVVFIFITIDPDNLPRAVVSRCQKYVFSKIKD 585
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
D RLR+ICV+E ++ + AALD IA S+GS+RDAE +LDQLSLLGKKIT SL +L+
Sbjct: 586 IDTVCRLRKICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLL 645
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
+ D + LA + + + + R L
Sbjct: 646 AGLIMDIIAGTYKLADVACCNGSAVGGRSL------------------------------ 675
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
+EA++++L +ALKILS+ EKQ+R+S + TW T ALLQL SS D+
Sbjct: 676 ------------TEAELERLQQALKILSDAEKQIRLSSERPTWFTAALLQLGCGHSS-DM 722
Query: 652 NDSKLCLRYAHDKDGDSHCTI--------------------------------SPRDSFK 679
N K + H D+ I SP+
Sbjct: 723 NQQKCSTQEHHKLTNDAMSEIARESSSRAVSHSLSAFGISKRTIDTKTVSVHSSPQVIAS 782
Query: 680 H---------LVRGSC------------VGDKANKLGALED-YKGTLESIWKTATELCQS 717
H LV G C + D ++ AL + +L +W E C S
Sbjct: 783 HSSQLRLNDNLVYGECRSVDRLPLNFNQLNDNCSQQMALVNGISDSLAQVWIRCIENCHS 842
Query: 718 NSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIR 777
+L+ L GKL S+ G A+A + F SRA++ I +++++VL CNVE++
Sbjct: 843 KTLQQLLIDHGKLVSIRQLEGHAIAFIAFEDCSIKSRAQRFLSSITNSIETVLKCNVEVK 902
Query: 778 L 778
+
Sbjct: 903 I 903
>gi|218197144|gb|EEC79571.1| hypothetical protein OsI_20723 [Oryza sativa Indica Group]
Length = 1079
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 162/349 (46%), Positives = 238/349 (68%), Gaps = 2/349 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL+QK+ P F +++GQ++VV++L +AI + + Y+F+GP GTGKTS +R+FA ALNC
Sbjct: 355 SLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALNC 414
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S E +PC C C + G+SR + E+ V D + ++ + L P ++ ++FI
Sbjct: 415 HSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFI 474
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+D+C L +TW+ + +E + VVF++I+P LD LP +SR QK+ FPK+K+ DI
Sbjct: 475 VDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIV 533
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ L+ I E ++ D+ AL IA++S+GS+RDAEM LDQLSLLG++I++SL EL+G+VS
Sbjct: 534 NTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVGLVS 593
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
DD+L+DLLDLALS+DT NTV R++ + ++P+ L+SQLA +I DILAG R
Sbjct: 594 DDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQERVR 653
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ FF T S+ DM+KL +ALK LSE EKQLR+S + TWLT ALLQL+
Sbjct: 654 RKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLA 702
>gi|222632318|gb|EEE64450.1| hypothetical protein OsJ_19296 [Oryza sativa Japonica Group]
Length = 1012
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 162/349 (46%), Positives = 238/349 (68%), Gaps = 2/349 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL+QK+ P F +++GQ++VV++L +AI + + Y+F+GP GTGKTS +R+FA ALNC
Sbjct: 332 SLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALNC 391
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S E +PC C C + G+SR + E+ V D + ++ + L P ++ ++FI
Sbjct: 392 HSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFI 451
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+D+C L +TW+ + +E + VVF++I+P LD LP +SR QK+ FPK+K+ DI
Sbjct: 452 VDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIV 510
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ L+ I E ++ D+ AL IA++S+GS+RDAEM LDQLSLLG++I++SL EL+G+VS
Sbjct: 511 NTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVGLVS 570
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
DD+L+DLLDLALS+DT NTV R++ + ++P+ L+SQLA +I DILAG R
Sbjct: 571 DDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQERVR 630
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ FF T S+ DM+KL +ALK LSE EKQLR+S + TWLT ALLQL+
Sbjct: 631 RKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLA 679
>gi|115465047|ref|NP_001056123.1| Os05g0529600 [Oryza sativa Japonica Group]
gi|45642717|gb|AAS72345.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
Group]
gi|52353403|gb|AAU43971.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
Group]
gi|113579674|dbj|BAF18037.1| Os05g0529600 [Oryza sativa Japonica Group]
Length = 1023
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/349 (46%), Positives = 238/349 (68%), Gaps = 2/349 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL+QK+ P F +++GQ++VV++L +AI + + Y+F+GP GTGKTS +R+FA ALNC
Sbjct: 355 SLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALNC 414
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S E +PC C C + G+SR + E+ V D + ++ + L P ++ ++FI
Sbjct: 415 HSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFI 474
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+D+C L +TW+ + +E + VVF++I+P LD LP +SR QK+ FPK+K+ DI
Sbjct: 475 VDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIV 533
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ L+ I E ++ D+ AL IA++S+GS+RDAEM LDQLSLLG++I++SL EL+G+VS
Sbjct: 534 NTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVGLVS 593
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
DD+L+DLLDLALS+DT NTV R++ + ++P+ L+SQLA +I DILAG R
Sbjct: 594 DDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQERVR 653
Query: 596 KNFFGKHT-SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ FF T S+ DM+KL +ALK LSE EKQLR+S + TWLT ALLQL+
Sbjct: 654 RKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLA 702
>gi|255564671|ref|XP_002523330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223537418|gb|EEF39046.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 187
Score = 272 bits (695), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 170/187 (90%)
Query: 387 VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMI 446
+RINR +R+ +L+K+A +PP SSRFK+FI+DEC LL GETWAT+LNSLEN+SQHVVFV +
Sbjct: 1 MRINRVERIRALIKNAAIPPVSSRFKVFIVDECHLLQGETWATILNSLENLSQHVVFVTV 60
Query: 447 TPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIR 506
TP LDKLPRS ++ SQKYHFPKIKD DIA +L+ IC+EE I+FDQ ALDFIAAKSNGS+R
Sbjct: 61 TPHLDKLPRSVVTHSQKYHFPKIKDADIAVKLKNICIEEGIDFDQVALDFIAAKSNGSLR 120
Query: 507 DAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKI 566
DAEM+LDQ+SLLGK+IT+SLAYEL+ +VSDDELLDLLDL LSSDTSNTVIRARELMRS+I
Sbjct: 121 DAEMMLDQMSLLGKRITMSLAYELVRVVSDDELLDLLDLVLSSDTSNTVIRARELMRSRI 180
Query: 567 DPMQLIS 573
DP+Q++S
Sbjct: 181 DPIQIVS 187
>gi|302822922|ref|XP_002993116.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii]
gi|300139007|gb|EFJ05756.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii]
Length = 220
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 157/220 (71%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP F ++VGQN++V++L +A++RG + YLFHGPRGTGKTSA++I AAALNC
Sbjct: 1 SLSQKYRPKTFRDIVGQNMLVQALGNAVTRGRIAPVYLFHGPRGTGKTSAAKILAAALNC 60
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+S+ED +PCG+CREC L G+S DVKEVD + + + L+ A + P S R+K+FI
Sbjct: 61 VSVEDTRPCGVCRECLLLCLGKSGDVKEVDVASHDSTSLMKKLLMDAVVGPSSGRYKVFI 120
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDEC L E W L LE +H VF++ T + ++LP A +R QK+HFPKIKD D+
Sbjct: 121 IDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRCQKFHFPKIKDSDVV 180
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL 515
SRL+ + +E++ ++ ALD IAA+S GS+RDAE LDQL
Sbjct: 181 SRLQALAAKESLEVEKDALDLIAARSGGSLRDAETTLDQL 220
>gi|302762260|ref|XP_002964552.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii]
gi|300168281|gb|EFJ34885.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii]
Length = 220
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 156/220 (70%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLSQK+RP F ++VGQN++V++L +A++RG + YLFHGPRGTGKTSA++I AAALNC
Sbjct: 1 SLSQKYRPKTFRDIVGQNMLVQALGNAVTRGRIAPVYLFHGPRGTGKTSAAKILAAALNC 60
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+S+ED +PCG+CREC L G+S DVKEVD + + + L+ A + P S R+K+FI
Sbjct: 61 VSVEDTRPCGVCRECLLLCLGKSGDVKEVDVASHDSTSLMKKLLMDAVVGPSSGRYKVFI 120
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDEC L E W L LE +H VF++ T + ++LP A +R QK+HFPKIKD D+
Sbjct: 121 IDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRCQKFHFPKIKDSDVV 180
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL 515
SRL+ + +E + ++ ALD IAA+S GS+RDAE LDQL
Sbjct: 181 SRLQALAAKENLEVEKDALDLIAARSGGSLRDAETTLDQL 220
>gi|284928754|ref|YP_003421276.1| DNA polymerase III subunit gamma/tau [cyanobacterium UCYN-A]
gi|284809213|gb|ADB94918.1| DNA polymerase III, subunit gamma/tau [cyanobacterium UCYN-A]
Length = 726
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 218/403 (54%), Gaps = 15/403 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L QK+RP FD LVGQ +V +L +AI ++ YLF GPRGTGKTS +RIFA ++NCL
Sbjct: 7 LYQKYRPQTFDGLVGQKSIVLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAKSINCL 66
Query: 357 SLEDQK--PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + PCG C C + G S DV E+D+ D + +++ A P R+KI+
Sbjct: 67 ASDAPSISPCGNCEACQTINKGSSLDVIEIDAASNTGVDNIREIIEQAKFAPMQLRYKIY 126
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
I+DEC +L + +L LE +HV+F++ T + ++ + +SR Q++ + +I +I
Sbjct: 127 IVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPTIISRCQRFDYRRIAIEEI 186
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L +I EE IN + AL+ +A SNG +RDAE LLDQLSL KI +L+G++
Sbjct: 187 VQHLGKIAKEENINIEIDALNLVAKISNGGLRDAESLLDQLSLFTGKINSEKVNDLVGLI 246
Query: 535 SDDELLDLLDLALSSDTSNTVIR-ARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
S+ +LL LL A+ S+ S +I +L+ +P+ ++ +AN +++L K C E
Sbjct: 247 SERDLLSLLQ-AIRSNNSKLIIEFCGQLINKGKEPLTILQNIANFHLNLLISKVSPQCPE 305
Query: 594 ---ARKNFFGKHTSEADMQKLSRALK---ILSETEKQLRMSKHQTTWLTVALLQL--SSS 645
K+ + + EA+ K R LK L +E QL+ + W+ + LL L
Sbjct: 306 LTMISKDIWKELCIEAEFWKTDRILKNQQKLRNSEIQLKSTTQPYLWIEIILLDLLQEEK 365
Query: 646 ESSLDLNDSKLCLRYAHDKD---GDSHCTISPRDSFKHLVRGS 685
E S+D N+ + +++ +K D + + K+LV S
Sbjct: 366 EFSIDSNNLDIAAKFSSNKKLVIDDPKIEDQTKGNIKNLVENS 408
>gi|167999753|ref|XP_001752581.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696112|gb|EDQ82452.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 366
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 218/377 (57%), Gaps = 25/377 (6%)
Query: 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468
+R+K+ I++ C LL+ + W L LE + VVFV+ T + +++P +A SR QK+HF K
Sbjct: 8 ARYKVIIVEGCDLLNTDIWNAFLTLLEEPPKDVVFVLNTTDAERIPATATSRCQKFHFSK 67
Query: 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAY 528
+ + DI RL + +E ++ + AL IAA+S+GS+RDA +LLDQ+ LL K +++ L
Sbjct: 68 VSEADIVKRLEYLAEKEGLHVEAGALSLIAARSDGSLRDAVILLDQVCLLDKNVSVDLVR 127
Query: 529 ELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL 588
E+ G+ ++ LDLLD ALS+DT NTV RE++ S ++P++L+SQL LI DILAG L
Sbjct: 128 EVGGLPPVNKNLDLLDFALSADTINTVKTLREVLASSVEPLRLVSQLGGLITDILAG-SL 186
Query: 589 EDCSEARKN--FFGKH-TSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
E +RK+ FF ++ +++ + +L +ALK+LSE E QLR + + TWLT ALLQ +
Sbjct: 187 EVDRGSRKDGSFFNRNFSAKVEQHRLRQALKVLSEAELQLRGAGDKATWLTAALLQFAPD 246
Query: 646 ESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKH---LVRGSCVGDKANKLGALEDYKG 702
S L + D T S R S K L R S LG
Sbjct: 247 RSFL-----------PSEASTDVALT-SARPSTKTSEPLRRAS-----ETTLGFQIFRDD 289
Query: 703 TLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHG-LAVAELEFHHRDYVSRAEKSWKL 761
L +W+ S +L+ L+ G+L + V +G LAV LEF H +AE+SW+
Sbjct: 290 ELVELWRAVLWNITSRNLRQLLQTHGQLVAGGVANGSLAVVSLEFDHPRDKYKAERSWRT 349
Query: 762 IASTLQSVLGCNVEIRL 778
I+ST Q+VL +VE+++
Sbjct: 350 ISSTFQAVLNTDVELQI 366
>gi|434397165|ref|YP_007131169.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
gi|428268262|gb|AFZ34203.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
Length = 780
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 204/361 (56%), Gaps = 8/361 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + R+L++AI++ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQRFADLVGQSAIARTLINAINQKKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S +D +PCG C C ++G + DV E+D+ D + +++ A P R+K++
Sbjct: 66 SSDDPTDQPCGKCEVCRAIATGTALDVIEIDAASNTGVDNIREVIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE ++V+FV+ T + ++ + +SR Q++ + +I ++
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPRNVIFVLATTDPQRVLSTIISRCQRFDYRRIPLEEM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L I EEAI+ + AL +A +NG +RDAE LLDQLSLL + IT+ ++L+G V
Sbjct: 186 VAHLSYIAREEAIDITEDALTLVAQIANGGLRDAESLLDQLSLLPETITVEKIWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL---EDC 591
+ +LL LL S+ + + R L+ +P+ ++ LA +++L K D
Sbjct: 246 PEQDLLSLLQAIRESNPEQILQKCRNLLDRGREPIIVLQNLAGFYLNLLIAKTAAHRSDL 305
Query: 592 SEARKNFFGKHTSEA---DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
++ + K EA ++ + R + L E E QL+ + WL V LL L S+
Sbjct: 306 VAVKETTWQKLIQEAKNWEINLILRGQQQLKEGEVQLKHTTQPRLWLEVILLGLLQGSST 365
Query: 649 L 649
L
Sbjct: 366 L 366
>gi|115439733|ref|NP_001044146.1| Os01g0730900 [Oryza sativa Japonica Group]
gi|57899145|dbj|BAD87007.1| putative DNA polymerase III subunit gamma/tau [Oryza sativa
Japonica Group]
gi|113533677|dbj|BAF06060.1| Os01g0730900 [Oryza sativa Japonica Group]
Length = 622
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 178/291 (61%), Gaps = 18/291 (6%)
Query: 253 SNLSSDLEDNPLLSGEIGETA---HYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDEL 309
SN +S++E + L G G + +GR H+ SL+QKF P F ++
Sbjct: 319 SNQTSEMESDLLSEGRSGHKSRGSQHGRGRHR--------------SLTQKFAPKTFKDV 364
Query: 310 VGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369
VGQ++VV++L +A+ R + Y+F+GP GTGKTS +R+FA ALNC S E +PC C
Sbjct: 365 VGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCTS 424
Query: 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWAT 429
C + G+SR V E+ V D + ++ + L P S +++FI D+C L +TW+
Sbjct: 425 CIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSL 484
Query: 430 VLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINF 489
+ ++ + VVF++++P LD LP LSR QK+ FPK+K+ DI + L+ I E+++
Sbjct: 485 ISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIVNTLQWISTSESLDV 543
Query: 490 DQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELL 540
D+ AL IA++S+GS+RDAEM LDQLSLLG++I+LSL EL+ +S LL
Sbjct: 544 DRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVRYLSSLILL 594
>gi|282895316|ref|ZP_06303518.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281199622|gb|EFA74482.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 663
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/394 (32%), Positives = 203/394 (51%), Gaps = 11/394 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AIS V YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAISLVKVAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
PCG+C C + G S DV E+D+ D + L++ A P R+K++
Sbjct: 66 QSGHPTPTPCGVCDICQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I+ +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L +I E I Q A+ +A S G +RDAE LLDQL+LL ++ ++L+G V
Sbjct: 186 VKHLSKIAHNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGDVSPEQVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
S+ +L LL +D+ N + R+++ +P+ ++ L D+L K L
Sbjct: 246 SEKDLFALLQAIAQNDSENVLDNTRKILDRGREPLIILQNLGAFYRDLLIAKTASSRQDL 305
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSE 646
C++ +E D+ + R + L E QL+ + WL V LL L +
Sbjct: 306 VSCTQETWQQLVNFATELDITFILRGQQQLRTAEAQLKSTTQPRLWLEVTLLGLLPITQN 365
Query: 647 SSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKH 680
S + ++ L L +++G +H +SP ++
Sbjct: 366 SMVAPSNPSLHLGNIQNQNGTNH-NVSPSHVYRQ 398
>gi|381183647|ref|ZP_09892365.1| DNA polymerase III subunits gamma and tau [Listeriaceae bacterium
TTU M1-001]
gi|380316455|gb|EIA19856.1| DNA polymerase III subunits gamma and tau [Listeriaceae bacterium
TTU M1-001]
Length = 574
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 201/358 (56%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP FD++VGQ+ V ++L +AI++ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFDDVVGQSHVTKTLQNAITQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C + G + DV E+D+ N + + + + P S++KI+I
Sbjct: 65 ENSTNGEPCNECDVCKGITDGSNPDVLEIDAASNNGVEEIRDIREKVKYAPTVSKYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTKDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
R+ I EE I FD+ AL IA + G +RDA LLDQ+ G ++++ A E+ G V
Sbjct: 185 QRMAYILNEEKITFDEKALMIIARAAEGGMRDALSLLDQVISYGSDEVSVQDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L DL+ L+ D S ++ R L+ DP++L+ L DIL + + E
Sbjct: 245 AQNLLTDLVAAILNQDASLSMERLSSLLLEGKDPVRLVEDLLVFFRDILLYQKAPNLEET 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+ F + A ++ + +++L++T Q+R S H ++ VA++ L+ ES
Sbjct: 305 LERAVPDEPFRELAKSATASQIYKGVELLNKTTTQMRFSNHPGIYVEVAIVMLTQLES 362
>gi|299820909|ref|ZP_07052798.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM
20601]
gi|299817930|gb|EFI85165.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM
20601]
Length = 580
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 198/356 (55%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ+ V ++L +AI + ++ YLF GPRGTGKTSA+++FA A+NC
Sbjct: 5 ALYRVFRPQAFQDIVGQSHVTKTLQNAIVQNKISHAYLFSGPRGTGKTSAAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G + DV E+D+ N + + + + P +S++K++I
Sbjct: 65 ERSTDGEPCNECDTCKGITDGSNPDVLEIDAASNNGVEEIRDIREKVKYAPTNSKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
+ + I E+I ++ AL I + G +RDA LLDQ+ G +++ + A E+ G V
Sbjct: 185 AHMASILDSESIQYEDKALQIIGRAAEGGLRDALSLLDQVISFGSEEVGVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L DL++ + D + L+ DP++L+ L DIL + D EA
Sbjct: 245 AQNLLTDLVEAVMDKDPKQAISTLSSLLAEGKDPVRLVEDLLVFFRDILLYQKAPDLDEA 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ + F +AD + +K+L++T++Q+R S H ++ VA++Q++ S
Sbjct: 305 LERALVDDSFEALAKKADAAVIYHCVKVLNDTQQQMRFSNHPGIYVEVAMVQMTQS 360
>gi|119493255|ref|ZP_01624095.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119452728|gb|EAW33906.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 683
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 194/360 (53%), Gaps = 14/360 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + +L +AI RG + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQDAIATTLTNAIHRGRIVPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQK--PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S ++ PCG C C ++G + DV E+D+ D + L++ A P R+K++
Sbjct: 66 STDEPTATPCGTCAVCKGITNGSTLDVIEIDAASNTGVDNIRELIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE + VVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPERVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEPM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L+ I +E I A+ +A + G +RDAE LLDQLSLL +I + ++L+G V
Sbjct: 186 VQHLQFIAEKEQIPITLEAIKMVAQIAQGGLRDAESLLDQLSLLAGEINVEQVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +LL+LL S ++++ + R+L+ +P+ ++ LA D+L K S+
Sbjct: 246 PERDLLELLKAIASENSTDIIDYIRQLLNRGREPLVVLQNLAEFYRDLLIAKTAPQRSDL 305
Query: 595 RKNF---------FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K F H ++Q + A K L E E Q++ + WL + LL L S
Sbjct: 306 VKLTQPTWEELCQFAHH---WEIQTILAAQKYLREGETQIKNTTQPRLWLEIILLGLLPS 362
>gi|422810741|ref|ZP_16859152.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
FSL J1-208]
gi|378750946|gb|EHY61537.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
FSL J1-208]
Length = 580
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 195/359 (54%), Gaps = 6/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + D E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPDLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQS 363
>gi|159904325|ref|YP_001551669.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9211]
gi|159889501|gb|ABX09715.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9211]
Length = 578
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 196/346 (56%), Gaps = 17/346 (4%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
S T L K+RP FD+LVGQ V+ +L A+ + YLF GPRGTGKTS++RI A
Sbjct: 2 SNTYAPLHNKYRPQSFDDLVGQKVIASTLKQALLTNRIAPAYLFCGPRGTGKTSSARILA 61
Query: 351 AALNCLSLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS 408
+LNCL++E+ PC C C S+G + DV E+D+ D + L++ + P
Sbjct: 62 RSLNCLNVEEPTINPCCQCNLCQTISAGNALDVIEIDAASNTGVDNIRDLIEKSKFAPVI 121
Query: 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468
+R+KI++IDEC +L + +L +LE VVF++ T + +L + +SR Q++ F +
Sbjct: 122 ARWKIYVIDECHMLSAAAFNALLKTLEEPPSRVVFILATTDPQRLLPTIISRCQRFDFSQ 181
Query: 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAY 528
I+ D+ + L+ I +E I ++ A++ +A +S G +RDA+ +LDQLSLL + IT++
Sbjct: 182 IELNDLINHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQLSLLPQPITVNAVL 241
Query: 529 ELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL 588
+L+G VS+++LLDL D N ++ REL+ + DPM ++ LA+++ D++
Sbjct: 242 DLLGEVSEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGILQGLASILRDLVLKNAA 301
Query: 589 ED----CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKH 630
D CS S+ QKLS + L E E+ L+ H
Sbjct: 302 PDYPDLCS----------ISQESHQKLSE-IASLVEPERLLQWQSH 336
>gi|254931024|ref|ZP_05264383.1| DNA polymerase III [Listeria monocytogenes HPB2262]
gi|405751049|ref|YP_006674515.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
ATCC 19117]
gi|417318743|ref|ZP_12105308.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1-220]
gi|293582570|gb|EFF94602.1| DNA polymerase III [Listeria monocytogenes HPB2262]
gi|328469564|gb|EGF40505.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1-220]
gi|404220249|emb|CBY71613.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
ATCC 19117]
Length = 579
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQASQSV 364
>gi|339448592|ref|ZP_08652148.1| DNA polymerase III subunits gamma and tau [Lactobacillus
fructivorans KCTC 3543]
Length = 592
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 202/368 (54%), Gaps = 10/368 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ V+ ++L +A+ ++ YLF GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRTWRPQRFDEIVGQPVITQTLKNALITNQISHAYLFTGPRGTGKTSAAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C + G DV E+D+ N + + ++ A P ++K++I
Sbjct: 65 PNLKDGEPCNECATCLAINKGAFNDVIEIDAASNNGVEEIRNIRDKAKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR+Q++ F +IK DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPEHVIFILATTEPQKIPATIISRTQRFDFKRIKASDIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I E+ I++D AL IA + G +RDA +LDQ LS K+T A + G V
Sbjct: 185 KRMEYILSEKNIDYDDKALKVIAKSAEGGMRDALSILDQALSYSNDKVTYESALSVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ D+L ++ +SD + +E++ D Q I L + +IL +D
Sbjct: 245 TRDKLQSYIEAVFNSDVQTGLKMVQEILDDGKDANQFIEDLVDYCQNILL--YHQDPEMV 302
Query: 595 RKNFFG-------KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+K+ G K E + + + ++I+S+ + Q+R S H +L + ++L++++
Sbjct: 303 QKSELGLLGSNFKKIAGEIGSELIYQYVEIMSDVQNQMRYSSHPDVYLDILTVKLANAKK 362
Query: 648 SLDLNDSK 655
S + SK
Sbjct: 363 SGTVAGSK 370
>gi|424715523|ref|YP_007016238.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
serotype 4b str. LL195]
gi|424014707|emb|CCO65247.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
serotype 4b str. LL195]
Length = 614
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 40 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 99
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 100 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 159
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 160 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 219
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 220 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVDDALEITGSV 279
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 280 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 339
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 340 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALIQLTQAGQSV 399
>gi|16804741|ref|NP_466226.1| hypothetical protein lmo2704 [Listeria monocytogenes EGD-e]
gi|254827269|ref|ZP_05231956.1| dnaX [Listeria monocytogenes FSL N3-165]
gi|255028847|ref|ZP_05300798.1| hypothetical protein LmonL_06056 [Listeria monocytogenes LO28]
gi|284800410|ref|YP_003412275.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
gi|284993596|ref|YP_003415364.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
gi|386051687|ref|YP_005969678.1| DNA polymerase III subunits gamma and Tau [Listeria monocytogenes
FSL R2-561]
gi|386054893|ref|YP_005972451.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
Finland 1998]
gi|404285213|ref|YP_006686110.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2372]
gi|404414782|ref|YP_006700369.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC7179]
gi|405759769|ref|YP_006689045.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2479]
gi|16412204|emb|CAD00917.1| dnaX [Listeria monocytogenes EGD-e]
gi|258599651|gb|EEW12976.1| dnaX [Listeria monocytogenes FSL N3-165]
gi|284055972|gb|ADB66913.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
gi|284059063|gb|ADB70002.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
gi|346425533|gb|AEO27058.1| DNA polymerase III subunits gamma and Tau [Listeria monocytogenes
FSL R2-561]
gi|346647544|gb|AEO40169.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
Finland 1998]
gi|404234715|emb|CBY56118.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2372]
gi|404237651|emb|CBY59053.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2479]
gi|404240481|emb|CBY61882.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC7179]
Length = 579
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 305 MERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSV 364
>gi|405756835|ref|YP_006680299.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2540]
gi|404226035|emb|CBY77397.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2540]
Length = 579
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSV 364
>gi|46908883|ref|YP_015272.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
serotype 4b str. F2365]
gi|226225256|ref|YP_002759363.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|386733396|ref|YP_006206892.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
07PF0776]
gi|405753917|ref|YP_006677382.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2378]
gi|406705445|ref|YP_006755799.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
L312]
gi|46882156|gb|AAT05449.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
serotype 4b str. F2365]
gi|225877718|emb|CAS06432.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|384392154|gb|AFH81224.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
07PF0776]
gi|404223117|emb|CBY74480.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2378]
gi|406362475|emb|CBY68748.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
L312]
Length = 579
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVDDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALIQLTQAGQSV 364
>gi|428769843|ref|YP_007161633.1| DNA polymerase III subunits gamma and tau [Cyanobacterium aponinum
PCC 10605]
gi|428684122|gb|AFZ53589.1| DNA polymerase III, subunits gamma and tau [Cyanobacterium aponinum
PCC 10605]
Length = 626
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/361 (32%), Positives = 198/361 (54%), Gaps = 8/361 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +L GQ + ++L++AI + YLF GPRGTGKTS++RI A +LNC+
Sbjct: 6 LHHKYRPQTFSQLTGQEAIAQTLINAIKNEKIVPAYLFCGPRGTGKTSSARILAKSLNCI 65
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ +PCG C C S+G + DV E+D+ D + +++ A P R+K++
Sbjct: 66 ESDRPTAEPCGKCEVCKSISNGSALDVVEIDAASNTGVDNIREIIEKAQYAPVKCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE S V+FV+ T + ++ + +SR Q++ + +I ++
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPSPRVIFVLATTDPQRVLPTIISRCQRFDYRRIPLIEM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L+ I ++E I+ L +A +NG +RDA+ LLDQLSLL IT ++L+G V
Sbjct: 186 VKHLQDIAIKENIDITPEGLSLVAQLANGGMRDAQTLLDQLSLLSGTITPERVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
S+ +LL L+ S + +I+ R+L+ +P+ ++ LAN + +L K E
Sbjct: 246 SEQDLLALISAIASDNPEEVIIQCRKLLDRGREPLIVLQNLANFYLTLLIAKTSPQKKEL 305
Query: 594 --ARKNFFGKHTSEA---DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + K EA D++ + + K L ++E Q+R + WL + LL L S ++
Sbjct: 306 VAITDDTWQKLIQEAHQWDLKVILQGQKKLKDSEVQIRNTTQPRLWLEITLLSLLPSANA 365
Query: 649 L 649
L
Sbjct: 366 L 366
>gi|254824931|ref|ZP_05229932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
gi|254851991|ref|ZP_05241339.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
gi|255520363|ref|ZP_05387600.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
FSL J1-175]
gi|300763536|ref|ZP_07073534.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
FSL N1-017]
gi|404282278|ref|YP_006683176.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2755]
gi|404288092|ref|YP_006694678.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|258605289|gb|EEW17897.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
gi|293594171|gb|EFG01932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
gi|300515813|gb|EFK42862.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
FSL N1-017]
gi|404228913|emb|CBY50318.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2755]
gi|404247021|emb|CBY05246.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
serotype 7 str. SLCC2482]
Length = 579
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSV 364
>gi|386045012|ref|YP_005963817.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
10403S]
gi|404411956|ref|YP_006697544.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC5850]
gi|345538246|gb|AEO07686.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
10403S]
gi|404231782|emb|CBY53186.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC5850]
Length = 579
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSV 364
>gi|47095511|ref|ZP_00233120.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 1/2a F6854]
gi|254912955|ref|ZP_05262967.1| DNA polymerase III [Listeria monocytogenes J2818]
gi|254937336|ref|ZP_05269033.1| DNA polymerase III [Listeria monocytogenes F6900]
gi|386048439|ref|YP_005966771.1| DNA polymerase III gamma and tau [Listeria monocytogenes J0161]
gi|47016121|gb|EAL07045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 1/2a F6854]
gi|258609942|gb|EEW22550.1| DNA polymerase III [Listeria monocytogenes F6900]
gi|293590956|gb|EFF99290.1| DNA polymerase III [Listeria monocytogenes J2818]
gi|345535430|gb|AEO04871.1| DNA polymerase III gamma and tau [Listeria monocytogenes J0161]
Length = 579
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSV 364
>gi|335357635|ref|ZP_08549505.1| DNA polymerase III subunits gamma and tau [Lactobacillus animalis
KCTC 3501]
Length = 578
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 195/354 (55%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +LVGQ + ++L +A+ T YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQVFSDLVGQEFITKTLKNALLTKQTTHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 RNQKDGEPCNQCETCKAITAGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPTNVVFILATTEPHKIPTTIISRTQRFDFRRITPQAIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ +D+AAL IA + G +RDA +LDQ LS ++TL A + G V
Sbjct: 185 KRMEYILQQKGFTYDEAALKVIAKAAEGGMRDALSILDQVLSFGDNQVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ D L L ++ DTS+ + E++ D +LI L N D+L A K +E+
Sbjct: 245 TRDNLTKYLHQVVAKDTSSALATIHEILEDGKDAKRLIEDLINYCRDLLLYQQAPKLVEE 304
Query: 591 CSEAR-KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
N F K E D ++L + + IL+E ++ +R + H+ +L V ++LS
Sbjct: 305 SELGMLDNDFKKFAGEVDPEQLYQMIDILNEQQENMRFTVHEAIYLEVLTVKLS 358
>gi|255026196|ref|ZP_05298182.1| hypothetical protein LmonocytFSL_07310 [Listeria monocytogenes FSL
J2-003]
Length = 446
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 196/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 305 MERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSV 364
>gi|423101273|ref|ZP_17088977.1| DNA polymerase III, subunit gamma and tau, partial [Listeria
innocua ATCC 33091]
gi|370792059|gb|EHN59950.1| DNA polymerase III, subunit gamma and tau, partial [Listeria
innocua ATCC 33091]
Length = 616
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 195/359 (54%), Gaps = 6/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 42 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 101
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 102 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 161
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 162 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 221
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 222 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 281
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 282 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 341
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S
Sbjct: 342 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQS 400
>gi|315283987|ref|ZP_07871985.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
gi|313612362|gb|EFR86506.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
Length = 579
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 196/359 (54%), Gaps = 6/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
+RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 ARLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNAAQQQMRFSNHPGIYVEVALVQLTQAGQS 363
>gi|16801912|ref|NP_472180.1| hypothetical protein lin2852 [Listeria innocua Clip11262]
gi|16415387|emb|CAC98078.1| dnaX [Listeria innocua Clip11262]
Length = 579
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 194/359 (54%), Gaps = 6/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S
Sbjct: 305 LERALIDEDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQS 363
>gi|116874071|ref|YP_850852.1| DNA polymerase III subunits gamma and tau [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116742949|emb|CAK22073.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 579
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 195/359 (54%), Gaps = 6/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQS 363
>gi|75908432|ref|YP_322728.1| AAA ATPase [Anabaena variabilis ATCC 29413]
gi|75702157|gb|ABA21833.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413]
Length = 650
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 192/360 (53%), Gaps = 10/360 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + +PCG+C C + G S DV E+D+ D + L++ A P R+K++
Sbjct: 66 NSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I+ +
Sbjct: 126 VIDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E IN A+ +A S G +RDAE LLDQL+LL ++T ++L+G V
Sbjct: 186 VKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLALLPNEVTPEQVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
S+ +LL LL A++ D V+ R+++ +P+ ++ LA D+L K
Sbjct: 246 SEQDLLVLL-AAIAQDNPELVLDSTRQILDRGREPLTILQNLAAFYRDLLIAKTAPNRHN 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L C++ N + + + K L E E Q++ + WL V LL L S S
Sbjct: 305 LVACTQQTWNALVESAQSLPISTILLGQKHLQEAELQIKHTTQPRLWLEVTLLGLLPSAS 364
>gi|443322915|ref|ZP_21051928.1| DNA polymerase III, subunit gamma/tau [Gloeocapsa sp. PCC 73106]
gi|442787333|gb|ELR97053.1| DNA polymerase III, subunit gamma/tau [Gloeocapsa sp. PCC 73106]
Length = 697
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 198/355 (55%), Gaps = 10/355 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI+ + YLF GPRGTGKTS++RI A +LNC+
Sbjct: 15 LHHKYRPQTFAELVGQEAIATTLANAITLARIAPAYLFTGPRGTGKTSSARILAKSLNCV 74
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S +PCG C C + G + DV E+D+ D + +++ A P R+K++
Sbjct: 75 SGTQPTPQPCGKCEMCMAIARGSALDVIEIDAASNTGVDNIREIIERAQFSPLKYRYKVY 134
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE VVFV+ T + K+ + +SR Q++ + +I G +
Sbjct: 135 VIDECHMLSTAAFNALLKTLEEPPPSVVFVLATTDPQKVLPTIISRCQRFDYRRISIGAM 194
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L +I EE I A+ +A +NG +RDA+ LLDQLSL +IT ++L+G
Sbjct: 195 VTHLEKIAREEKIEISTEAITLVAQLANGGLRDAQSLLDQLSLFSGEITSERIWDLVGAT 254
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKC----LE 589
+ +L+DLL A+++ T +++ + REL+ ++P+ ++ LA+ +++L K LE
Sbjct: 255 PEQDLIDLLQ-AIATGTPVSILQKCRELLNRGLEPLIVLQNLASFYLNLLIAKTGPQQLE 313
Query: 590 DCSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + + T + + ++ +A + L ++E Q++ + WL LL L
Sbjct: 314 LVTVTPQTWQKLLELTPQWSVAEILKAQQYLKQSEIQIKNTTQPYLWLEATLLGL 368
>gi|428217762|ref|YP_007102227.1| DNA polymerase III subunits gamma and tau [Pseudanabaena sp. PCC
7367]
gi|427989544|gb|AFY69799.1| DNA polymerase III, subunits gamma and tau [Pseudanabaena sp. PCC
7367]
Length = 684
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 195/358 (54%), Gaps = 10/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F L+GQ + R+L +AI++ + YLF G RGTGKTS +RI A +LNCL
Sbjct: 6 LHHKYRPQTFAALIGQEAIARTLTNAINQRRIAPAYLFTGSRGTGKTSTARIMAKSLNCL 65
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + PCG C C + G + DV E+D+ D + L++ + P +R+K++
Sbjct: 66 SYDAPTPTPCGTCDMCQSIAKGIALDVTEIDAASNTGVDNIRELIERSQFAPVQARYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IDEC +L + +L +LE +HVVF++ T + ++ + +SR Q++ F +I +
Sbjct: 126 AIDECHMLSTAAFNALLKTLEEPPEHVVFILATTDPQRVLSTIISRCQRFDFRRIPLDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ LR I E I Q AL +A + G +RDAE LLDQLSLL +IT+ ++L+G V
Sbjct: 186 VAHLREIADTEQIEITQEALILVAQIAQGGLRDAESLLDQLSLLEGEITIEAVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ +LLDL+ A+++D S ++ + R++M +P+ ++ LA L D+L + D +
Sbjct: 246 PERDLLDLI-AAIAADNSTQILEKVRQVMDRGREPLIVLQNLAGLYRDLLIAQAASDRHD 304
Query: 594 -ARKNFFGKHTSEADMQKLSRALKI-----LSETEKQLRMSKHQTTWLTVALLQLSSS 645
+G LSRA+ + L + E Q++ + WL V LL L S
Sbjct: 305 LVALTSYGWDRLNQLAHSLSRAVILKGQQHLRDAEVQIKNTTQPRLWLEVTLLGLQPS 362
>gi|290891886|ref|ZP_06554883.1| dnaX protein [Listeria monocytogenes FSL J2-071]
gi|404409082|ref|YP_006691797.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2376]
gi|290558480|gb|EFD91997.1| dnaX protein [Listeria monocytogenes FSL J2-071]
gi|404243231|emb|CBY64631.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2376]
Length = 580
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 193/354 (54%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLT 358
>gi|300867457|ref|ZP_07112111.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
6506]
gi|300334572|emb|CBN57279.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
6506]
Length = 664
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 198/362 (54%), Gaps = 18/362 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + ++L +AI + + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQEAIAQTLSNAIRQDRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + PCG C C GR+ DV E+D+ D + L++ A P R+K++
Sbjct: 66 AGNVPTATPCGKCDVCQGIVEGRTLDVIEIDAASNTGVDSIRDLIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + ++L +LE VVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 VIDECHMLSVSAFNSLLKTLEEPPDRVVFVLATTDAQRVLPTIISRCQRFDFRRIPVVAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ LR I +E IN A+ +A + G +RDAE LLDQLSLL ++T+ ++L+G V
Sbjct: 186 TNHLREIAQKENINIAPDAVQMVAQIAQGGLRDAESLLDQLSLLAGEVTVEKVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIR-ARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+++L+ LL+ A++SDT+ TVI R LM +P+ ++ LA D L K +
Sbjct: 246 PENDLMALLE-AIASDTTETVIDCVRHLMDRGREPLLVLQNLAGFYRDFLIAK----TAP 300
Query: 594 ARKNFFG--KHTSEA--------DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R N + T E D++ + + K L +E Q++ + WL + LL L
Sbjct: 301 KRYNLVALTQQTWEKLCDFSKGWDVEMILASQKHLQSSEVQIKNTTQPRLWLEMTLLGLL 360
Query: 644 SS 645
S
Sbjct: 361 PS 362
>gi|217966098|ref|YP_002351776.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
gi|386009482|ref|YP_005927760.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
L99]
gi|386028102|ref|YP_005948878.1| DNA polymerase III subunit gamma and tau [Listeria monocytogenes
M7]
gi|217335368|gb|ACK41162.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
gi|307572292|emb|CAR85471.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
L99]
gi|336024683|gb|AEH93820.1| DNA polymerase III gamma and tau subunit [Listeria monocytogenes
M7]
Length = 580
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 193/354 (54%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLT 358
>gi|47092324|ref|ZP_00230115.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 4b H7858]
gi|417313913|ref|ZP_12100619.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1816]
gi|47019303|gb|EAL10045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 4b H7858]
gi|328468184|gb|EGF39190.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1816]
Length = 579
Score = 209 bits (531), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 195/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRIFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ I EE I +D+ AL +A + G +RDA LLDQ+ G +++ + A E+ G V
Sbjct: 185 GRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVAVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 305 LERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGKSV 364
>gi|289435979|ref|YP_003465851.1| DNA polymerase III subunits gamma and tau [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289172223|emb|CBH28769.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 578
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 193/358 (53%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIIQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V
Sbjct: 185 GRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+ + F AD K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S
Sbjct: 305 LERALVDDDFVALAKRADSLKIYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQTGS 362
>gi|282901379|ref|ZP_06309304.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
CS-505]
gi|281193658|gb|EFA68630.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
CS-505]
Length = 660
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 188/362 (51%), Gaps = 9/362 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AIS + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAISLVKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SL--EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
PCG+C C + G S DV E+D+ D + L++ A P R+K++
Sbjct: 66 QTGHPTPTPCGVCDTCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I+ +
Sbjct: 126 VIDECHMLSAAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L +I E I Q A+ +A S G +RDAE LLDQL+LL +++ ++L+G V
Sbjct: 186 VKHLSKIAYNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGEVSPEQVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
S+ +L LL +D+ + R ++ +P+ ++ L D+L K L
Sbjct: 246 SEKDLFALLQAIAQNDSEKVLDHTRNILDRGREPLIILQNLGAFYRDLLIAKTASSRQDL 305
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL-QLSSSES 647
C++ +E D+ + + L E QL+ + WL V LL L ++S
Sbjct: 306 VSCTQETWQQLVSFAAELDITFILHGQQQLRTAEVQLKSTTQPRLWLEVTLLGMLPITQS 365
Query: 648 SL 649
S+
Sbjct: 366 SM 367
>gi|427732172|ref|YP_007078409.1| DNA polymerase III subunits gamma and tau [Nostoc sp. PCC 7524]
gi|427368091|gb|AFY50812.1| DNA polymerase III, subunit gamma/tau [Nostoc sp. PCC 7524]
Length = 647
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 191/358 (53%), Gaps = 10/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F E+VGQ + +L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKIFAEVVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ +PCG+C C + G S DV E+D+ D + L++ A P R+K++
Sbjct: 66 KTDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I+ +
Sbjct: 126 VIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIELEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
A L I E I+ AA+ +A S G +RDAE LLDQL+LL +++ ++L+G V
Sbjct: 186 ARHLSAIASNENIHISPAAITLVAQLSQGGLRDAESLLDQLALLSGEVSPDRVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKC------ 587
S+ +LL LL A++ D V+ A R+++ +P+ ++ LA D+L K
Sbjct: 246 SERDLLALLG-AIAQDHPEAVLDATRQILDRGREPLTILQNLAAFYRDLLIAKTAPNRHN 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L C++ + M + K L + E Q++ + WL V LL L S
Sbjct: 305 LVACTQQTWTALVECAQSLSMSTILLGQKHLQQAELQIKNTTQPRLWLEVTLLGLLPS 362
>gi|166368134|ref|YP_001660407.1| DNA polymerase III subunit gamma/tau [Microcystis aeruginosa
NIES-843]
gi|166090507|dbj|BAG05215.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa
NIES-843]
Length = 654
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/456 (28%), Positives = 224/456 (49%), Gaps = 32/456 (7%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + +L +A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + P CG C C ++G + DV E+D+ D + +++ + P R+K++
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L++I EAI+ + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 186 VAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL------ 588
+ +LL LL + + + + R LM +P+ ++ LA +++L K
Sbjct: 246 PERDLLTLLKVIHGNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRPEM 305
Query: 589 ---------EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
E C+EAR ++++ R ++L ++E QL+ + WL V L
Sbjct: 306 VAVTAPTWQELCTEART---------WSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTL 356
Query: 640 LQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALED 699
L L + L + + R + + +P ++ + + + +
Sbjct: 357 LGLLPQAQVIPLVATAVPSRPQTSVERPTEVITAPA-PVNQPIKPAVITPTTSVAVPKTE 415
Query: 700 YKGTL-----ESIWKTATELCQSNSLKTFLRKQGKL 730
K E IW+ E+ + + +T LR+ G L
Sbjct: 416 VKTVASDDNHEQIWQRVLEVMEPPTTRTLLRQHGSL 451
>gi|434393523|ref|YP_007128470.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
gi|428265364|gb|AFZ31310.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
Length = 648
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 192/360 (53%), Gaps = 9/360 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L++A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 5 LHHKYRPQSFAELVGQEAIATTLINAVRTSRIAPAYLFTGPRGTGKTSSARILAKSLNCL 64
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + + PCG+C C ++G + DV E+D+ D + +++ + P R+K++
Sbjct: 65 ASRVPTETPCGVCEVCRGIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 124
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IDEC +L + +L +LE HVVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 125 AIDECHMLSTAAFNALLKTLEEPPPHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLAAM 184
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L+ I +E I AL +A S G +RDAE LLDQLSLL ++T+ ++L+G V
Sbjct: 185 VQHLQAIAAQEQIQITSEALTLVAQLSQGGLRDAESLLDQLSLL-PEVTVERVWDLVGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
++ +LL LLD ++ + R R+L+ +P+ ++ LA+ D+L K L
Sbjct: 244 AEPDLLALLDAIAQNNAEQLLDRTRQLLERGREPLTILQNLASCYRDLLIAKTAPHRNDL 303
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
C+ + ++ + K L +E Q++ S WL V LL L + S+
Sbjct: 304 VACTATTWQAMCDLVQQWNIATILDGQKNLKASEAQIKTSTQPRLWLEVTLLGLLPTTST 363
>gi|413946123|gb|AFW78772.1| hypothetical protein ZEAMMB73_060572 [Zea mays]
Length = 555
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 168/276 (60%), Gaps = 15/276 (5%)
Query: 265 LSGEIG----------ETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNV 314
SGE+G + A RSG K + + + S +QK+ P F ++VGQ++
Sbjct: 282 FSGELGIFSKSSELDSDLASEARSGQKSRGSHRARHR----SFTQKYAPRTFKDVVGQSL 337
Query: 315 VVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374
VV++L +AI + + Y+F+GP GTGKTS +R+FA ALNC S E +PC C C +
Sbjct: 338 VVQALSNAILKKKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCASCIAHN 397
Query: 375 SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSL 434
G+SR + E+ V D + ++ + L P S+ ++FIID+C L +TW+ + +
Sbjct: 398 LGKSRSLLEIGPVGNIDLDGIVDILDNVMLSPVKSQHRVFIIDDCNTLPPDTWSVISKVV 457
Query: 435 ENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAAL 494
E + VVF++I+P LD LP +SR QK+ FPK+K+ DI S L+ I E ++ D+ AL
Sbjct: 458 ERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIISTLQWISTSEGLDVDRDAL 516
Query: 495 DFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530
IA++S+GS+RDAEM LDQLSLLG+ I++SL EL
Sbjct: 517 KLIASRSDGSLRDAEMTLDQLSLLGQTISMSLVQEL 552
>gi|72383094|ref|YP_292449.1| DNA polymerase III subunit tau [Prochlorococcus marinus str.
NATL2A]
gi|72002944|gb|AAZ58746.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str.
NATL2A]
Length = 565
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 252/512 (49%), Gaps = 38/512 (7%)
Query: 287 ISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSAS 346
I+TY L K+RP FDELVGQ+ + +L A+ + Y+F GPRGTGKTS++
Sbjct: 2 ITTYE----PLHHKYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSA 57
Query: 347 RIFAAALNCLSLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFL 404
RIFA +LNCL E PCG C C SSG + DV E+D+ + + L++ +
Sbjct: 58 RIFAKSLNCLKSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIERSRF 117
Query: 405 PPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKY 464
P +R+K+++IDEC +L + +L +LE + VVF++ T + ++ + LSR ++
Sbjct: 118 APAKARWKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMRF 177
Query: 465 HFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITL 524
F +I D+ S L I +E I ++ A+ IA S G +RDAE LLDQ+SLL IT
Sbjct: 178 DFRRIALHDLESHLINIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQVSLLPPPITQ 237
Query: 525 SLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
LIG + ++EL+ L ++ D ++ + L+ +P+ ++ +A+++ D++
Sbjct: 238 LNIINLIGAIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILRDLVV 297
Query: 585 GKCLED----CSEARK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWL 635
K C+ +++ NF ++ + L LK +E +R S WL
Sbjct: 298 TKVTNKPTNLCNISQEHSESLNFLATSSNLDQILNLQAKLK---GSESNIRNSNQPNLWL 354
Query: 636 TVALLQLSSSESSLDLNDSKLCLRYAHDKD-------GDSHCTISPRDSFKHLVRGSCVG 688
+ LL + S E S + N+ K L D ++ +I P ++ K ++ +
Sbjct: 355 EIHLLGMLSDEVSKENNNIKQSLVKTKISDNSESENTNNTSNSIVP-NTEKEQIKTTAFL 413
Query: 689 DKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHG-LAVAELEFH 747
D+ L L+ IWK + + S K L +Q KL +L + +A++E
Sbjct: 414 DETKTSPTL-----NLDDIWKKVIAMLELPSTKMLLSQQAKLINLSSDSAEIAISE---- 464
Query: 748 HRDYVSRAEKSWKLIASTLQSVLGCNVEIRLL 779
+++ + LI +G + ++ L+
Sbjct: 465 --KWINMIQSRKNLIEDAFYKAIGSSTKVLLI 494
>gi|443662745|ref|ZP_21133015.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
DIANCHI905]
gi|159027138|emb|CAO86769.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332037|gb|ELS46667.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
DIANCHI905]
Length = 654
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 130/458 (28%), Positives = 224/458 (48%), Gaps = 32/458 (6%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + +L +A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + P CG C C ++G + DV E+D+ D + +++ + P R+K++
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L++I EAI+ + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 186 VAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL------ 588
+ +LL LL + + + + R LM +P+ ++ LA +++L K
Sbjct: 246 PERDLLTLLKVIHGNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRPEM 305
Query: 589 ---------EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
E C+EAR ++++ R ++L ++E QL+ + WL V L
Sbjct: 306 VAVTAPTWQELCTEART---------WSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTL 356
Query: 640 LQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALED 699
L L + L + R + + +P ++ + + + +
Sbjct: 357 LGLLPQAQVIPLVATAAPSRPQTSAERPTEMITAPV-PVNEPIKPAVITSTTSVAVPKTE 415
Query: 700 YKGTL-----ESIWKTATELCQSNSLKTFLRKQGKLSS 732
K E IW+ E+ + + +T LR+ G L S
Sbjct: 416 VKTVTSDDNHEQIWQQVLEVMEPPTTRTLLRQHGSLFS 453
>gi|86605279|ref|YP_474042.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
JA-3-3Ab]
gi|86553821|gb|ABC98779.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
JA-3-3Ab]
Length = 692
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 196/381 (51%), Gaps = 11/381 (2%)
Query: 300 KFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE 359
K+RP F E+VGQ VV++L +AI G V YLF GPRGTGKTS++RI A +LNC
Sbjct: 13 KYRPQRFAEVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKSLNCEQGP 72
Query: 360 DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDEC 419
PC +C +C ++G S DV E+D+ D + L++ A P +SR+K+++IDEC
Sbjct: 73 TPDPCQVCSQCRAITAGSSLDVIEIDAASNTGVDNIRELIERAQFAPVNSRYKVYVIDEC 132
Query: 420 QLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLR 479
+L + +L +LE VVFV+ T + ++ + +SR Q++ F +I D+ + L
Sbjct: 133 HMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLDDMVAHLG 192
Query: 480 RICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDEL 539
+I +E I AL +A + G +RDAE LLDQLSLL IT ++L+G + + +L
Sbjct: 193 QIAAQEGIPIAPEALHLVAQLAQGGLRDAERLLDQLSLLEGSITPEAVWDLVGGIPERQL 252
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------LEDCSE 593
LDL D L+ D + + R+L+ +P+ ++ L D+L K L ++
Sbjct: 253 LDLTDALLAQDVQAVLAQTRQLLERGREPLVVLQSLVVFYRDLLLAKTAPQQRQLAAVTD 312
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLND 653
+ ++ L A L + E Q+R S WL +ALL L L
Sbjct: 313 PTWAALQQRAPRYSVEMLLAAQSHLRQCEPQIRQSGQPQLWLEIALLDLLG-----QLRQ 367
Query: 654 SKLCLRYAHDKDGDSHCTISP 674
S + L K G+ + P
Sbjct: 368 SAVPLPSIEAKGGEPLPAVGP 388
>gi|425437010|ref|ZP_18817439.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9432]
gi|389678112|emb|CCH92995.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9432]
Length = 654
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 130/456 (28%), Positives = 222/456 (48%), Gaps = 32/456 (7%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + +L +A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + P CG C C ++G + DV E+D+ D + +++ + P R+K++
Sbjct: 66 SSDHPTPIPCGKCSVCHAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L++I EAI+ + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 186 VAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL------ 588
+ +LL LL + S+ + + R LM +P+ ++ LA +++L K
Sbjct: 246 PERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRPEM 305
Query: 589 ---------EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
E C+EAR ++++ R ++L ++E QL+ + WL V L
Sbjct: 306 VAVTAPTWQELCAEART---------WSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTL 356
Query: 640 LQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALED 699
L L + L + R + +P ++ + + +
Sbjct: 357 LGLLPQAQVIPLVATVAPSRPQTSAERPPEVITAPA-PVNEPIKPPVITPTTSVAVPKTE 415
Query: 700 YKGTL-----ESIWKTATELCQSNSLKTFLRKQGKL 730
K E IW+ E+ + + +T LR+ G L
Sbjct: 416 VKTVTSDDNHEQIWQQVLEVMEPPTTRTLLRQHGSL 451
>gi|294794411|ref|ZP_06759547.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
gi|294454741|gb|EFG23114.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
Length = 892
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 184/361 (50%), Gaps = 6/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C SG+S DV E+D+ D V +L +S P R K+FI
Sbjct: 65 EQGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DIA
Sbjct: 125 IDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL + +E D AA IA ++G +RDA +LDQ + + IT + ELIG+V
Sbjct: 185 QRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
S + ++ LD + D + + + D Q++ L + +L GK D E
Sbjct: 245 SKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVGKVAPDADEL 304
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
A KN F + D +L++ ++ + + T + + LL L + S+
Sbjct: 305 KVYDAFKNEFLAQANSVDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAKLGSV 364
Query: 650 D 650
D
Sbjct: 365 D 365
>gi|17232424|ref|NP_488972.1| DNA polymerase III subunits gamma and tau [Nostoc sp. PCC 7120]
gi|17134070|dbj|BAB76631.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
Length = 655
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 190/358 (53%), Gaps = 10/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + +PCG+C C + G S DV E+D+ D + L++ A P R+K++
Sbjct: 66 NSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I+ +
Sbjct: 126 VIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E IN A+ +A S G +RDAE LLDQL+LL ++T ++L+G V
Sbjct: 186 VKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLALLPNEVTPEQVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
S+ +LL LL A++ D V+ R+++ +P+ ++ LA D+L K
Sbjct: 246 SEQDLLVLL-AAIAQDNPELVLDSTRQILDRGREPLTILQNLAAFYRDLLIAKTAPNRHN 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L C++ + + + K L E E Q++ + WL V LL L S
Sbjct: 305 LVACTQQTWKALVESAQSLPISTILLGQKHLQEAELQIKHTTQPRLWLEVTLLGLLPS 362
>gi|425455862|ref|ZP_18835573.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9807]
gi|389803161|emb|CCI17876.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9807]
Length = 654
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 129/456 (28%), Positives = 222/456 (48%), Gaps = 32/456 (7%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + +L +A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + P CG C C ++G + DV E+D+ D + +++ + P R+K++
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L++I EAI+ + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 186 VVHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED---- 590
+ +LL LL + S+ + + R LM +P+ ++ LA +++L K +
Sbjct: 246 PERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRPEM 305
Query: 591 -----------CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
C+EAR ++++ R ++L ++E QL+ + WL V L
Sbjct: 306 VAVTAPTWQDLCTEART---------WSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTL 356
Query: 640 LQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALED 699
L L + L + R + +P ++ + + + +
Sbjct: 357 LGLLPQAQVIPLVATVAPSRPQTSAERPPEMITAPA-PVNEPIKPAVITPTTSVAVPKTE 415
Query: 700 YKGTL-----ESIWKTATELCQSNSLKTFLRKQGKL 730
K E IW+ E+ + + +T LR+ G L
Sbjct: 416 VKTVASDDNHEQIWQQVLEVMEPPTTRTLLRQHGSL 451
>gi|440756560|ref|ZP_20935760.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
TAIHU98]
gi|440172589|gb|ELP52073.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
TAIHU98]
Length = 654
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 127/447 (28%), Positives = 219/447 (48%), Gaps = 14/447 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + +L +A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + P CG C C ++G + DV E+D+ D + +++ + P R+K++
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L++I EAI+ + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 186 VAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +LL LL + S+ + + R LM +P+ ++ LA +++L K + E
Sbjct: 246 PERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRPEM 305
Query: 595 RK------NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
K ++++ R ++L ++E QL+ + WL V LL L
Sbjct: 306 VAVTAPTWQDLCKEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQAQV 365
Query: 649 LDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTL---- 704
+ L + R + +P ++ + + + K
Sbjct: 366 IPLVATVAPSRPQTSAERPPEVITAPA-PVNEPIKPPVITPTTSVAVPKTEVKTVTSDDN 424
Query: 705 -ESIWKTATELCQSNSLKTFLRKQGKL 730
E IW+ E+ + + +T LR+ G L
Sbjct: 425 HEQIWQQVLEVMEPPTTRTLLRQHGSL 451
>gi|428313466|ref|YP_007124443.1| DNA polymerase III subunits gamma and tau [Microcoleus sp. PCC
7113]
gi|428255078|gb|AFZ21037.1| DNA polymerase III, subunit gamma/tau [Microcoleus sp. PCC 7113]
Length = 789
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/359 (33%), Positives = 190/359 (52%), Gaps = 12/359 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 30 LHHKYRPQTFADLVGQEAIATTLTNAILSERIAPAYLFTGPRGTGKTSSARILAKSLNCL 89
Query: 357 SLEDQK---PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
+DQ PCG C C +SG + DV E+D+ D + +++ A P R+K+
Sbjct: 90 K-QDQPTESPCGYCDVCKSIASGAALDVIEIDAASNTGVDNIREIIERAQFAPVQCRYKV 148
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
+++DEC +L + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I
Sbjct: 149 YVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLDA 208
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
+ LR I +E I+ AL +A + G +RDAE LLDQLSLL +K+ + ++L+G
Sbjct: 209 MVGHLRHISSQEQIDITPEALTLVAQVAQGGLRDAESLLDQLSLLPEKVAVEHVWDLVGA 268
Query: 534 VSDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKC----- 587
V + +L+ L ALSSD S V+ R LM +P+ ++ LA D+L K
Sbjct: 269 VPERDLMALTK-ALSSDNSEAVLDHCRRLMDKGREPLIVLQNLAGFYRDLLIAKTAPNRN 327
Query: 588 -LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + D+ + + + L +E Q++ + WL V LL L S
Sbjct: 328 DLVAVTPPTWEQLREFAKSLDISTILQGQQHLKNSEAQIKNTTQPRLWLEVTLLGLLKS 386
>gi|118445160|ref|YP_879267.1| DNA polymerase III subunits gamma and tau [Clostridium novyi NT]
gi|118135616|gb|ABK62660.1| DNA polymerase III, gamma and tau subunits [Clostridium novyi NT]
Length = 539
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/358 (31%), Positives = 201/358 (56%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FDE+VGQ + +L + + + YLF G RGTGKTS ++IF+ A+NC
Sbjct: 5 ALYREWRPQTFDEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C S+G S DV E+D+ N+ D + L++ PP R+K++I
Sbjct: 65 LNPQDGEPCNECEMCKKISAGLSIDVSEMDAASHNKVDDIRDLIEEVKYPPQEGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++V+F++ T + KLP + LSR Q++ F +IK DI
Sbjct: 125 MDEAHMLTQGAVNAFLKTLEEPPENVIFILATTDPQKLPITILSRCQRFDFKRIKSDDIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL +I E+ I D +L IA S+G++RDA +LDQ +S+ K+ ++G+V
Sbjct: 185 GRLIKITKEQGIFGDNKSLKLIARMSDGAMRDALSILDQAISMGNGKVDYEQVINMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE----- 589
+++ L+ L + + D N++ +++ + D I + + + +++ K +
Sbjct: 245 TNENLIKLTNTIIDKDVENSIRIIDDVVYAGKDINLFIKDMIHHMRNLMMAKVTQKPEDV 304
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D SE NF + ++ ++++ R ++IL E E+Q + SK +L +A++++ E
Sbjct: 305 LDMSEENINFLKEQANKIRIEEIMRCIRILQECEEQSKWSKQGRIYLELAVIKMCKIE 362
>gi|425450409|ref|ZP_18830237.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
7941]
gi|389768796|emb|CCI06200.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
7941]
Length = 654
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 127/447 (28%), Positives = 219/447 (48%), Gaps = 14/447 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + +L +A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + P CG C C ++G + DV E+D+ D + +++ + P R+K++
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L++I EAI+ + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 186 VAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +LL LL + S+ + + R LM +P+ ++ LA +++L K + E
Sbjct: 246 PERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRPEM 305
Query: 595 RK------NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
K ++++ R ++L ++E QL+ + WL V LL L
Sbjct: 306 VAVTAPTWQDLCKEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQAQV 365
Query: 649 LDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTL---- 704
+ L + R + +P ++ + + + K
Sbjct: 366 IPLVATVAPSRPQTSAERPPEVITAPA-PVNEPIKPPVITPTTSVAVPKTEVKTVTSDDN 424
Query: 705 -ESIWKTATELCQSNSLKTFLRKQGKL 730
E IW+ E+ + + +T LR+ G L
Sbjct: 425 HEQIWQQVLEVMEPPTTRTLLRQHGSL 451
>gi|86608779|ref|YP_477541.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557321|gb|ABD02278.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 779
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 188/349 (53%), Gaps = 6/349 (1%)
Query: 300 KFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE 359
K+RP F ++VGQ VV++L +AI G V YLF GPRGTGKTS++RI A +LNC
Sbjct: 13 KYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKSLNCEQGP 72
Query: 360 DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDEC 419
PC C +C ++G S DV E+D+ D + L++ A P +SR+K+++IDEC
Sbjct: 73 TPDPCQACSQCRAITAGASLDVLEIDAASNTGVDNIRELIERAQFAPVNSRYKVYVIDEC 132
Query: 420 QLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLR 479
+L + +L +LE VVFV+ T + ++ + +SR Q++ F +I D+ + L
Sbjct: 133 HMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLDDMVAHLG 192
Query: 480 RICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDEL 539
+I +E I AL +A S G +RDAE LLDQLSLL IT ++L+G + + +L
Sbjct: 193 KIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQLSLLEGSITPEAVWDLVGGIPEQQL 252
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------LEDCSE 593
L L+D L+ D + + R+L+ +P+ L+ L L D+L K L ++
Sbjct: 253 LALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNLVALYRDLLLVKTAPQQRELVAVTD 312
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + ++ L A L + E Q+R S WL +AL+ L
Sbjct: 313 STWAALQQRAPRYSVEILLAAQSHLRQCEPQIRQSGQPQLWLEIALVDL 361
>gi|334118530|ref|ZP_08492619.1| DNA polymerase III, subunits gamma and tau [Microcoleus vaginatus
FGP-2]
gi|333459537|gb|EGK88150.1| DNA polymerase III, subunits gamma and tau [Microcoleus vaginatus
FGP-2]
Length = 685
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 193/358 (53%), Gaps = 10/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + ++L SAI + + YLF GPRGTGKTS++RIFA +LNC+
Sbjct: 6 LHHKYRPQTFAELVGQEAIAQTLTSAILQERIAPAYLFTGPRGTGKTSSARIFAKSLNCI 65
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + PCG C C + G + DV E+D+ D + L++ A P R+K++
Sbjct: 66 STDAPTPTPCGKCNVCQEIARGSTLDVIEIDAASNTGVDNIRDLIERAQFSPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDE +L + + +L +LE VVFV+ T + ++ + +SR QK+ F +I +
Sbjct: 126 VIDEVHMLSTQAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQKFDFRRIPLDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L +I E IN A+ +A + G +RDAE LLDQLSL ++T+ ++L+G V
Sbjct: 186 IAHLHKIAKLENINIASDAVQMVAQIAQGGLRDAESLLDQLSLFQGEVTVEKVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
+++L+DLL A+ +D + +I R LM +P+ ++ LA+ D+L K
Sbjct: 246 PENDLMDLLQ-AIDTDNATALIDMTRHLMDRGREPLIVLQSLASFYRDLLIAKAAPKRSD 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + A G + +++ + + K L E Q++ + WL V LL L S
Sbjct: 305 LVALTSATWEKLGDFARKWEVELILASQKHLQTHEVQIKNTTQPRLWLEVTLLGLLPS 362
>gi|269798692|ref|YP_003312592.1| DNA polymerase III subunits gamma/tau [Veillonella parvula DSM
2008]
gi|269095321|gb|ACZ25312.1| DNA polymerase III, subunits gamma and tau [Veillonella parvula DSM
2008]
Length = 895
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 189/375 (50%), Gaps = 8/375 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C SG+S DV E+D+ D V +L +S P R K+FI
Sbjct: 65 EHGPTDHPCNECSACRSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DIA
Sbjct: 125 IDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL + +E + D AA IA ++G +RDA +LDQ + + IT + ELIG+V
Sbjct: 185 QRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
S + ++ LD + D + + + D Q++ L + +L GK D E
Sbjct: 245 SKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVGKVAPDADEL 304
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
A K+ F + D +L++ ++ + + T + + LL L + S+
Sbjct: 305 KVYDAFKDEFLAQANSVDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAKLGSV 364
Query: 650 D--LNDSKLCLRYAH 662
D L D L A
Sbjct: 365 DESLEDRVYALESAE 379
>gi|254414978|ref|ZP_05028741.1| DNA polymerase III, subunits gamma and tau, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196178125|gb|EDX73126.1| DNA polymerase III, subunits gamma and tau, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 700
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 190/355 (53%), Gaps = 10/355 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + ++L +AI + V YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQEAIAQTLTNAIRQEKVAPAYLFCGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + +PCG C C + G + D+ E+D+ D + +++ A P R+K++
Sbjct: 66 TTDKPTPQPCGTCDVCRTIAQGTALDITEIDAASNTGVDNIREIIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 VVDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLAAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L+ I +E+IN A+ +A + G +RDAE LLDQLSLL +IT+ ++L+G V
Sbjct: 186 VKHLQYIATKESINITTEAITLVAQVAQGGLRDAESLLDQLSLLAGEITVECIWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIR-ARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
+ +LL L A++ + + V+ R LM +P+ ++ LA D+L K
Sbjct: 246 PERDLL-ALSQAITDNHAQAVLDCCRNLMDRGREPLVVLQNLAGFYRDLLIAKTAPSRQD 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
L + G+ D + + + L +E Q++ + WL V LL L
Sbjct: 305 LVAVTPPTWKQLGELAQSMDTTDILQGQQHLKSSEVQVKNTTQPRLWLEVTLLGL 359
>gi|417000436|ref|ZP_11940652.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula
ACS-068-V-Sch12]
gi|333976138|gb|EGL77010.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula
ACS-068-V-Sch12]
Length = 901
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 188/374 (50%), Gaps = 8/374 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C SG+S DV E+D+ D V +L +S P R K+FI
Sbjct: 65 EHGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DIA
Sbjct: 125 IDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL + +E D AA IA ++G +RDA +LDQ + + IT + ELIG+V
Sbjct: 185 QRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
S + ++ LD + D + + + D Q++ L + +L GK D E
Sbjct: 245 SKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVGKVAPDADEL 304
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
A K+ F + D +L++ ++ + + T + + LL L + S+
Sbjct: 305 KIYDAFKDEFLAQANSVDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAKLGSV 364
Query: 650 D--LNDSKLCLRYA 661
D L D L A
Sbjct: 365 DESLEDRIYALESA 378
>gi|319789969|ref|YP_004151602.1| DNA polymerase III, subunits gamma and tau [Thermovibrio
ammonificans HB-1]
gi|317114471|gb|ADU96961.1| DNA polymerase III, subunits gamma and tau [Thermovibrio
ammonificans HB-1]
Length = 460
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 187/350 (53%), Gaps = 18/350 (5%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
++ +K+RP FD++VGQ+ + ++L +AI G Y+F GPRG GKT+ +RI A ALN
Sbjct: 4 LAIPRKYRPQRFDQVVGQDFITKTLKNAIKSGRFAHAYIFAGPRGVGKTTTARIVAKALN 63
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C + D +PC C +C S G DV EVD+ D++ L +S P + K++
Sbjct: 64 CENPTDGEPCNSCPQCLEISKGAHPDVIEVDAATNRGIDQIRELRESVHYAPARGKRKVY 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L E + +L +LE +H VF++ T E+DK+P + LSR QK+ F K+ I
Sbjct: 124 IIDEFHMLTKEAFNALLKTLEEPPEHAVFILATTEIDKIPPTILSRCQKFLFRKVPRELI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGI 533
L RIC E + FD+ AL+ IA S G IRDAE LLDQ ++L G ++ + E +G+
Sbjct: 184 VETLERICRSEGVEFDREALELIAVASEGCIRDAESLLDQAIALGGGRVDSKVVSEFLGV 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
++ EL +LL A D + + + L +P+ ++ QL + + + L
Sbjct: 244 LTGRELRNLLQTAFKGDKAELRTQVKRLEELGYNPLFVVKQLLSWLEEELF--------- 294
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
T+ ++++ A ++LSE + L+ T L L +LS
Sbjct: 295 --------RTTTFSEEEVNAAFQLLSECYRSLQNHPQPYTALLFYLFRLS 336
>gi|282849744|ref|ZP_06259128.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
17745]
gi|282580681|gb|EFB86080.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
17745]
Length = 902
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/361 (33%), Positives = 185/361 (51%), Gaps = 6/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C SG+S DV E+D+ D V +L +S P R K+FI
Sbjct: 65 EHGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DIA
Sbjct: 125 IDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL + +E + D AA IA ++G +RDA +LDQ + + IT + ELIG+V
Sbjct: 185 QRLSYVAEKEGFSLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
S + ++ LD + D + + + D Q++ L + +L GK D E
Sbjct: 245 SKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVGKVAPDADEL 304
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
A K+ F + D +L++ ++ + + T + + LL L + S+
Sbjct: 305 KVYDAFKDEFLAQANSVDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAKLGSV 364
Query: 650 D 650
D
Sbjct: 365 D 365
>gi|443328498|ref|ZP_21057095.1| DNA polymerase III, subunit gamma/tau [Xenococcus sp. PCC 7305]
gi|442791952|gb|ELS01442.1| DNA polymerase III, subunit gamma/tau [Xenococcus sp. PCC 7305]
Length = 763
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/358 (31%), Positives = 193/358 (53%), Gaps = 8/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L++AI + + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFGDLVGQEAIANTLVNAIEQEKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQK--PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
++ PCG C C + G + DV E+D+ D + +++ A P SR+K++
Sbjct: 66 AVPKPTATPCGQCAVCQAIAVGTALDVIEIDAASNTGVDNIREIIERAKFAPVQSRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IDEC +L + +L +LE VVF++ T + ++ + +SR Q++ + +I G++
Sbjct: 126 AIDECHMLSTAAFNALLKTLEEPPPQVVFILATTDPQRVLSTIISRCQRFDYRRIPLGEM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I E I + A+ +A +NG +RDAE LLDQLSL IT+ ++L+G V
Sbjct: 186 TRHLEYIAATEKIAIAKEAITLVAQIANGGLRDAESLLDQLSLFPDTITIDQVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
+ +LL LL S + + + + R L+ +P+ ++ LA+ ++++ K D
Sbjct: 246 PEQDLLGLLKSIRSKNLEHILEKCRNLLDRGREPLVVLQNLASFYLNLVIAKTSPQRNDL 305
Query: 592 SEARKNFFGKHTSEADMQKLSRAL---KILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ + + +EA +++ L + L + E QL+ + WL V LL L S++
Sbjct: 306 VAVTETCWQELQTEAAHWEIALILQGQQQLKDAEVQLKNTTQPRLWLEVTLLGLVSTQ 363
>gi|428320532|ref|YP_007118414.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428244212|gb|AFZ09998.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 693
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 191/361 (52%), Gaps = 16/361 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + ++L SAI + + YLF GPRGTGKTS++RIFA +LNC+
Sbjct: 6 LHHKYRPQTFAELVGQEAIAQTLTSAILQERIAPAYLFTGPRGTGKTSSARIFAKSLNCI 65
Query: 357 SL--EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S PCG C C + G + DV E+D+ D + L++ A P R+K++
Sbjct: 66 STVAPTPTPCGKCNVCQEIARGSTLDVIEIDAASNTGVDNIRDLIERAQFSPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDE +L + + +L +LE VVFV+ T + ++ + +SR QK+ F +I +
Sbjct: 126 VIDEVHMLSTQAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQKFDFRRIPLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L +I E IN A+ +A + G +RDAE LLDQLSL ++T+ ++L+G V
Sbjct: 186 IAHLHKIAKLENINIASDAVQMVAQIAQGGLRDAESLLDQLSLFQGEVTVEKVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGK------- 586
+++L+DLL A+ +D + +I R LM +P+ ++ LA+ D+L K
Sbjct: 246 PENDLMDLLQ-AIDTDNATALIDMTRHLMDRGREPLIVLQSLASFYRDLLIAKAAPKRSD 304
Query: 587 --CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
L + + F +H D + + K L E Q++ + WL V LL L
Sbjct: 305 LVALTSATWEKLATFARHW---DAELILAGQKHLQTHEVQIKNTTQPRLWLEVTLLGLLP 361
Query: 645 S 645
S
Sbjct: 362 S 362
>gi|33241267|ref|NP_876209.1| DNA polymerase III subunit gamma/tau [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33238797|gb|AAQ00862.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 559
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 155/519 (29%), Positives = 258/519 (49%), Gaps = 32/519 (6%)
Query: 290 YSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIF 349
S+T L QK+RP FD+LVGQ+ +V +L A+ + YLF GPRGTGKTS++RI
Sbjct: 1 MSKTYQPLHQKYRPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARIL 60
Query: 350 AAALNCLSLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPF 407
A +LNC E PC C C G + D+ E+D+ D + L++ + P
Sbjct: 61 ARSLNCQQSEKPTIAPCCQCNLCKEIGKGTALDIIEIDAASNTGVDNIRELIERSQFAPV 120
Query: 408 SSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFP 467
+R+K+++IDEC +L + +L +LE VFV+ T + +L ++ LSR Q++ F
Sbjct: 121 QARWKVYVIDECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILSRCQRFDFR 180
Query: 468 KIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527
+I + S L I +E I DQ +++ IA +S G +RDAE LLDQLSLL I L
Sbjct: 181 RIPITSLTSHLTTIASKEKIEIDQESINLIAQRSEGGLRDAESLLDQLSLLKPPINLQSI 240
Query: 528 YELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC 587
+EL+G V +++L+ L +S D + + R+L + +P+ ++ L + D++ K
Sbjct: 241 WELLGEVPENDLIILTSSLISQDPISLLKTCRKLFDNGKEPISILQGLTATLRDLVLIKS 300
Query: 588 LED----CSEARKN--FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL- 640
L D CS ++++ K +SE ++ ++ K L +E Q+R S WL V LL
Sbjct: 301 LPDQPSLCSLSKQSQETLTKISSELELDRILYWQKYLKGSESQIRFSLQPRLWLEVLLLG 360
Query: 641 -----QLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLG 695
+S ++S ++ + K+ A++ + H + VR D
Sbjct: 361 LLSNPNISEKKASKNIQEVKV---NANNTLNNDHVIEKQILNTDESVRQEVTADN----- 412
Query: 696 ALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRA 755
E K L S W+ + S + L +Q +L++L N AE+ +++
Sbjct: 413 --EQSKSGLLSQWEQILSQIELPSTRMLLSQQARLTNLTKNQ----AEISISE-NWLGMI 465
Query: 756 EKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFSL 794
+ +I ++ LG N+E+ L+ +K N PS +
Sbjct: 466 QSRKNIIQKAIRKCLGENIELSLI---QQSKLNTPSIEV 501
>gi|119513249|ref|ZP_01632292.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
gi|119462090|gb|EAW43084.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
Length = 650
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 198/359 (55%), Gaps = 12/359 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQ---KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
+ DQ +PCG+C C + G S DV E+D+ D + L++ A P R+K+
Sbjct: 66 N-SDQPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKV 124
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
+++DEC +L + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I+
Sbjct: 125 YVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEA 184
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
+ + L I +E IN A+ I + G +RDAE LLDQL+L ++T ++L+G
Sbjct: 185 MVNHLSAIASKENINITSDAVTLIGQIAQGGLRDAESLLDQLALTVGEVTPDKVWDLVGS 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIR-ARELMRSKIDPMQLISQLANLIMDILAGKC----- 587
VS+ +L+ LL+ A++ + + V+ +R+++ S +P+ ++ LA L D+L +
Sbjct: 245 VSEQDLIALLN-AIAQNRAEGVLDCSRKILDSGREPLIILQNLAALYRDLLIAQTASNRQ 303
Query: 588 -LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L C++ + + + DM + + + L E Q++ + WL V LL L S
Sbjct: 304 DLVTCTQQTWTALVELSQKLDMSTILQGQQHLRTAEVQIKNTTQPRLWLEVTLLGLLPS 362
>gi|186684248|ref|YP_001867444.1| DNA polymerase III subunits gamma and tau [Nostoc punctiforme PCC
73102]
gi|186466700|gb|ACC82501.1| DNA polymerase III, subunits gamma and tau [Nostoc punctiforme PCC
73102]
Length = 707
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/361 (32%), Positives = 190/361 (52%), Gaps = 10/361 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIGTSKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ +PCG+C C + G + DV E+D+ D + L++ A P R+K++
Sbjct: 66 KSDRPTAEPCGVCDVCQGITKGYALDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I+ +
Sbjct: 126 VIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E I+ A+ +A S G +RDAE LLDQL LL +T ++L+G V
Sbjct: 186 VKHLSAIASKENIHISPEAVTLVAQLSQGGLRDAESLLDQLGLLAGVVTPDRVWDLVGTV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
S+ +LL LL+ A++ D V+ +++ +P+ + LA D+L K
Sbjct: 246 SEQDLLGLLN-AIAQDKPEAVLDSTHKILDRGREPLTFLQNLAAFYRDLLIAKTAPNRHD 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L C++ + DM + + L + E Q++ S WL V LL L S +
Sbjct: 305 LVACTQQTWTALVEFAQYFDMTMILAGQEHLRKAEVQIKNSTQPRLWLEVTLLGLLPSAT 364
Query: 648 S 648
+
Sbjct: 365 T 365
>gi|301067270|ref|YP_003789293.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei str.
Zhang]
gi|417984293|ref|ZP_12624917.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei 21/1]
gi|300439677|gb|ADK19443.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei str.
Zhang]
gi|410525921|gb|EKQ00816.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei 21/1]
Length = 565
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 195/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ S DP +LI L + D+L A L D
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDPGRLIEDLIEYLRDLLVNQQAPTLLGD 304
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 305 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 362
>gi|206895302|ref|YP_002246820.1| DNA polymerase III subunit gamma and tau [Coprothermobacter
proteolyticus DSM 5265]
gi|206737919|gb|ACI16997.1| DNA polymerase III, gamma and tau subunit [Coprothermobacter
proteolyticus DSM 5265]
Length = 522
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 169/285 (59%), Gaps = 2/285 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+E+VGQ+ V L A+ ++ YLF GP+G+GKTS +RIFA LNC
Sbjct: 2 ALYRKYRPQTFEEVVGQSHVTEILTKALDNQKISHAYLFAGPKGSGKTSCARIFAKGLNC 61
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ KPC C C L + G S DV E+D+ D + L + P SR+K++I
Sbjct: 62 ETGITSKPCNECESCKLINEGHSLDVIEIDAASNRGVDEIRELRERVKYRPAQSRYKVYI 121
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE ++VVF++ T + K+P + LSR Q++ F K+ ++
Sbjct: 122 IDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQRFRFKKLTSDEVF 181
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
L +C E ++ + AL+ IA S+G++RDA LL+Q+S++ + K+++ A L+ +V
Sbjct: 182 QILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLEQISVVDEGKVSIKTARFLLNVV 241
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLI 579
D+ +LDLL A +D V R ELM S ++PM+L + +L+
Sbjct: 242 EDEVILDLLKTAF-ADMDEAVERLAELMESGVEPMELFRTMKSLV 285
>gi|239630120|ref|ZP_04673151.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239527732|gb|EEQ66733.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 566
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 195/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 6 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 65
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 66 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 125
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 126 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 185
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 186 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ S DP +LI L + D+L A L D
Sbjct: 246 TTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDPGRLIEDLIEYLRDLLVNQQAPTLLGD 305
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 306 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 363
>gi|428209786|ref|YP_007094139.1| DNA polymerase III subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
gi|428011707|gb|AFY90270.1| DNA polymerase III, subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
Length = 681
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 10/360 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L AI R + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQEAIATTLTHAIERQKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ +PCG+C C + G + DV E+D+ D V L++ A P R+K++
Sbjct: 66 NSNKPTAQPCGVCVVCQGVAKGATLDVIEIDAASNTGVDNVRELIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IDEC +L + +L +LE HVVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 AIDECHMLSTAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E+I+ A+ +A+ + G +RDAE LLDQLSLL +T+ ++L+G V
Sbjct: 186 IGHLSAIAAKESIDITPEAIHLVASFAQGGLRDAESLLDQLSLLAGVVTVERIWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKC------ 587
++ +LL++L A++ + ++ A R +M +P+ L+ LA D+L K
Sbjct: 246 AEPDLLEILQ-AIAQNQPEALLDAVRRIMDRGREPLTLLQNLAGFYRDLLVAKTAPNRND 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L + A + D+ + + L+++E Q++ + WL V+LL L S S
Sbjct: 305 LIAVTPATWDALCTQAKVWDISNILVGQQHLAKSEAQIKNTTQPRLWLEVSLLGLLPSAS 364
>gi|294792632|ref|ZP_06757779.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
gi|294456531|gb|EFG24894.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
Length = 901
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 188/375 (50%), Gaps = 8/375 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C SG+S DV E+D+ D + +L +S P R K+FI
Sbjct: 65 EYGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DIA
Sbjct: 125 IDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL + +E D AA IA ++G +RDA +LDQ + + IT + ELIG+V
Sbjct: 185 QRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
S + ++ LD + D + + + D Q++ L + +L GK D E
Sbjct: 245 SKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVGKVAPDADEL 304
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
A K+ F + D +L++ ++ + + T + + LL L + ++
Sbjct: 305 KVYDAFKDEFLAQANSVDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAKLGAV 364
Query: 650 D--LNDSKLCLRYAH 662
D L D L A
Sbjct: 365 DGSLEDRVYALESAE 379
>gi|428304953|ref|YP_007141778.1| DNA polymerase III subunits gamma and tau [Crinalium epipsammum PCC
9333]
gi|428246488|gb|AFZ12268.1| DNA polymerase III, subunits gamma and tau [Crinalium epipsammum
PCC 9333]
Length = 656
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 192/358 (53%), Gaps = 10/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI + YLF G RGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFAQLVGQEAIATTLSNAIRLRRIAPAYLFTGARGTGKTSSARILAKSLNCL 65
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + PCG C C + G + D+ E+D+ D + L++ A P R K++
Sbjct: 66 SSDVPTSSPCGKCEVCRAIAFGSALDIIEIDAASNTGVDNIRELIERAQFAPVQCRHKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE HVVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 IIDEVHMLSTAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLDPM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
A LR+I E IN A+ +A + G +RDAE LLDQLSLL ++T+ ++L G V
Sbjct: 186 AQHLRKIAEAENINITDEAVTLVAQMAQGGLRDAESLLDQLSLLAGQVTVEKVWDLTGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKCLE---D 590
+ +L+ L+ A++++ + TV+ RAR LM +P+ ++ LA D+L K D
Sbjct: 246 PERDLIVLVQ-AIAANNAETVLDRARSLMERGREPLVVLQNLAGFYRDLLIAKTAPSRGD 304
Query: 591 CSEARKNFFGKHTSEA---DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ + + EA D ++ + K L ++E Q++ + WL V LL L S
Sbjct: 305 LVALTAQTWQQLSQEAKNWDANQILASQKHLKDSEVQIKNTTQPRLWLEVTLLGLLPS 362
>gi|238018439|ref|ZP_04598865.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
gi|237864910|gb|EEP66200.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
Length = 922
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/361 (33%), Positives = 183/361 (50%), Gaps = 6/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C SG+S DV E+D+ D V +L +S P R K+FI
Sbjct: 65 EHGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DIA
Sbjct: 125 IDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL + +E D AA IA ++G +RDA +LDQ + + IT + ELIG+V
Sbjct: 185 QRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATGTITPQVVEELIGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
S + ++ LD + D + + + D Q++ L + +L GK D E
Sbjct: 245 SKEWIIHFLDALRNGDGPKLLSYIHDALAEGRDATQIMEALIQHVRALLVGKVAPDADEL 304
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
A K+ F D +L++ ++ + + T + + LL L + S+
Sbjct: 305 KVYDAFKDEFLAQAESIDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAKLGSV 364
Query: 650 D 650
D
Sbjct: 365 D 365
>gi|298492637|ref|YP_003722814.1| DNA polymerase III subunits gamma and tau ['Nostoc azollae' 0708]
gi|298234555|gb|ADI65691.1| DNA polymerase III, subunits gamma and tau ['Nostoc azollae' 0708]
Length = 663
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 189/358 (52%), Gaps = 10/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AIS + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKSFAELVGQEAITTTLTNAISSAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ P CG+C C + G S DV E+D+ D + L++ A P R+K++
Sbjct: 66 KSDKPTPIPCGVCDICQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE ++VVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPKYVVFVLATTDPQRVLPTIISRCQRFDFRRIHLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E IN A+ +A S G +RDAE LLDQL+L ++ ++L+G V
Sbjct: 186 VKHLGAIASKENINICLDAVTLVAQMSQGGLRDAESLLDQLALFPGEVIPDQVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
S+ +LL LLD A++ D + V+ R+++ +P+ ++ +A D+L K
Sbjct: 246 SEKDLLALLD-AITQDNAEIVLDSTRQILDRGREPLTILQNVAAFYRDLLIAKTAPNRQD 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L C++ + D+ + R + L E QL+ + WL V LL L S
Sbjct: 305 LVACTQQTWTTLINFAHKLDITTILRGQQHLRTAEVQLKNTTQPRLWLEVTLLGLLPS 362
>gi|124026832|ref|YP_001015947.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. NATL1A]
gi|123961900|gb|ABM76683.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. NATL1A]
Length = 565
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/473 (29%), Positives = 236/473 (49%), Gaps = 26/473 (5%)
Query: 287 ISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSAS 346
I+TY L K+RP FDELVGQ+ + +L A+ + Y+F GPRGTGKTS++
Sbjct: 2 ITTYE----PLHHKYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSA 57
Query: 347 RIFAAALNCLSLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFL 404
RIFA +LNCL E PCG C C SSG + DV E+D+ + + L++ +
Sbjct: 58 RIFAKSLNCLKSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIERSRF 117
Query: 405 PPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKY 464
P +R+K+++IDEC +L + +L +LE + VVF++ T + ++ + LSR ++
Sbjct: 118 APAKARWKVYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMRF 177
Query: 465 HFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITL 524
F +I D+ S L +I +E I ++ A+ IA S G +RDAE LLDQ+SLL IT
Sbjct: 178 DFRRIALHDLESHLIKIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQVSLLPPPITQ 237
Query: 525 SLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
LIG + ++EL+ L ++ D ++ + L+ +P+ ++ +A+++ D++
Sbjct: 238 LNIINLIGAIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILRDLVV 297
Query: 585 GKC------LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVA 638
K L + S + +++ ++ L +E +R S WL +
Sbjct: 298 TKVTNKPTNLCNISREHSESLNDLATSSNLDQILNLQAKLKGSESNIRNSNQPNLWLEIH 357
Query: 639 LLQLSSSESSLDLNDSKLCLRYAHDKD-------GDSHCTISPRDSFKHLVRGSCVGDKA 691
LL + + E S + N + L D ++ I P ++ K ++ + D+
Sbjct: 358 LLGMLTDEVSKENNKIEQSLVKTKISDNSESKNTNNTSNRIVP-NTEKEQIKTTAFLDET 416
Query: 692 NKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHG-LAVAE 743
L L+ IWK + + S K L +Q KL +L+ + +A++E
Sbjct: 417 KTSPTL-----NLDDIWKKVIAMLELPSTKMLLSQQAKLINLNSDSAEIAISE 464
>gi|255564673|ref|XP_002523331.1| conserved hypothetical protein [Ricinus communis]
gi|223537419|gb|EEF39047.1| conserved hypothetical protein [Ricinus communis]
Length = 198
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 115/199 (57%), Positives = 131/199 (65%), Gaps = 16/199 (8%)
Query: 580 MDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
MD+LAGKC ED SE R+ F +H +EADMQ+LS ALK+LSETEKQLRMSK
Sbjct: 1 MDMLAGKCQEDNSEVRRKFSSRHVTEADMQRLSHALKVLSETEKQLRMSK---------- 50
Query: 640 LQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALED 699
L+ ND +R A D+DGD T S +S K L+ SC K +KLG D
Sbjct: 51 ------TPFLNANDPNPSIRNAQDRDGDFCSTSSTWESLKLLLPCSCEDGKLHKLGMQGD 104
Query: 700 YKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSW 759
K TLESIWK A ELCQSNSL+ FL KQGKLSSL VN L V EL FH DYVS+AEKSW
Sbjct: 105 CKATLESIWKNAIELCQSNSLRNFLGKQGKLSSLCVNQDLVVVELGFHRPDYVSKAEKSW 164
Query: 760 KLIASTLQSVLGCNVEIRL 778
K IAS LQS+LG NVEIR+
Sbjct: 165 KTIASALQSILGRNVEIRI 183
>gi|443329784|ref|YP_007378855.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
gi|428682410|gb|AFZ61174.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
Length = 437
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 191/354 (53%), Gaps = 8/354 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI+ + YLF GPRGTGKTS++RIFA +LNC
Sbjct: 6 LHLKYRPQSFVELVGQRAIATTLTNAITSQRIAPAYLFTGPRGTGKTSSARIFAKSLNCQ 65
Query: 357 --SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S PCGLC C S G S DV E+D+ + + + ++ + P +SR+K+F
Sbjct: 66 HGSSPTPTPCGLCNSCTSISKGLSLDVVEIDAASNSGVENIRQIIDRTHIIPVNSRYKVF 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DE L + + +L +LE ++VVF++ T E+ K+P + +SR Q++ F +I D+
Sbjct: 126 VLDEVHSLSSQGFQALLKTLEEPPKNVVFILCTTEIHKVPATIISRCQRFDFKRIGVEDM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L +I EE I+ AL IA S+G +RD++ LLDQLSLL I + +E++G V
Sbjct: 186 IQHLNQIVNEELIDITPEALRLIAQISSGCLRDSQCLLDQLSLLNITIDQNWVWEMVGNV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ ELL +++ +D+ + + R L+ +P+ ++ L + D+L K +
Sbjct: 246 PEYELLTMVERIAENDSDSVINIIRNLLEWGKEPLVILQNLTSFYRDMLIAKTSPSSKEM 305
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+E + T + + + L + E Q+++S WL V +L L
Sbjct: 306 VMLTEDTWQQLCQITKSWETTTILAGQQHLRQCEVQIKLSTQPQLWLEVGILGL 359
>gi|390933731|ref|YP_006391236.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569232|gb|AFK85637.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 529
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 150/490 (30%), Positives = 240/490 (48%), Gaps = 28/490 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E++GQN +VR+L + I G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPRSFGEVLGQNHIVRTLKNQIKSGRIGHAYLFCGTRGTGKTSVAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C+ C ++ D+ E+D+ N D V L + P S ++K++I
Sbjct: 64 PNSVDGEPCNKCQICQSANNNSLMDIIEIDAASNNSVDDVRELRDNIIYAPSSCKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L G + +L +LE QH +F++ T E +K+P + LSR Q++ F +I I+
Sbjct: 124 IDEVHMLSGSAFNALLKTLEEPPQHAIFILATTEPNKIPATILSRCQRFDFKRISAKVIS 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+++I + IN D A+ IA NGS+RDA +L+Q + +T +++G V+
Sbjct: 184 QNIKKIAEDSQINIDGRAIALIAKHGNGSMRDAISILEQCASYSDVLTYDDVCDILGTVN 243
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL----EDC 591
DD L L+ D T+ +LM ID L+ L + + D++ K E+
Sbjct: 244 DDTLFALVRSLSDRDGKETIRLIDKLMLYGIDVNNLVKALLSFLRDVIVYKTCGAESEEI 303
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
E N K S DM LS AL+ L + + ++R ++ L + LL+L + E S D+
Sbjct: 304 LETEVNDTIKDASLFDMAFLSNALEKLMDLQGKIRYAQSPRIMLEITLLKLINPEISPDI 363
Query: 652 ND--SKLCLRYAHDKDGDSHC-----------TISPRDSF------KHLVRGSCVGDKAN 692
+ +L + + K G T+ P +F K + V DKA+
Sbjct: 364 DSILDRLSMLESMIKSGKMMLPVEKDIAVNDETLKPEKAFDDVAIKKEAKKADDVVDKAD 423
Query: 693 K---LGALEDYKGTLESIWKTATELCQSNSL-KTFLRKQGKLSSLHVNHGLAVAEL-EFH 747
K + E +K L I K + SL K +L+ + H EL +
Sbjct: 424 KSIEINVNEVFKKLLSIIKKDRPMIFSFLSLGKPYLKDGNFVIEYPKEHVFYKEELNKIE 483
Query: 748 HRDYVSRAEK 757
++DY+ A K
Sbjct: 484 NKDYIKDAIK 493
>gi|113474658|ref|YP_720719.1| DNA polymerase III subunits gamma and tau [Trichodesmium erythraeum
IMS101]
gi|110165706|gb|ABG50246.1| DNA polymerase III, subunits gamma and tau [Trichodesmium
erythraeum IMS101]
Length = 695
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 195/362 (53%), Gaps = 18/362 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+V+ ++L +AI + YLF GPRGTGKTS++R+ A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAKSLNCL 65
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + PCG C C + G + DV E+D+ D + L++ + P R+K++
Sbjct: 66 SYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDE +L + +L +LE + VVF++ T + ++ + +SR Q++ F +I +
Sbjct: 126 VIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRIPLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +EE I+ A+ IA + G +RDAE LLDQLSLL +IT+ ++L+G V
Sbjct: 186 VKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQLSLLAGEITVERVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIR-ARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ +L+ L++ A+++D S V++ R++M +P+ ++ LA D+L K +
Sbjct: 246 PERDLMVLVE-AIAADNSIKVLKCTRQIMDRGKEPIIVLQNLAGFYRDLLIAK----TAP 300
Query: 594 ARKNFFG----------KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
KN + + + D+ + K L +E Q++ + WL V LL L
Sbjct: 301 TSKNLVALTKPTWEKLCQFSQDWDIGTILAGQKHLQTSEVQIKNTTQPRLWLEVTLLGLL 360
Query: 644 SS 645
S
Sbjct: 361 PS 362
>gi|428205008|ref|YP_007100634.1| DNA polymerase III subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
gi|428013127|gb|AFY91243.1| DNA polymerase III, subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
Length = 444
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 214/443 (48%), Gaps = 30/443 (6%)
Query: 300 KFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE 359
K+RP +LVGQ+++ +L +AI+ G + YLF GPRGTGKTS +RI A +LNC S
Sbjct: 10 KYRPQTLAQLVGQDIIATTLSNAINGGKIAPAYLFVGPRGTGKTSTARILAKSLNCQSAN 69
Query: 360 DQK--PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIID 417
PCG C+ C +S S DV E+D+ + + + +++ A P SR+K+ I+D
Sbjct: 70 QATTTPCGECQSCRAIASSHSLDVNELDAASNSGVENIREIVERASFAPVESRYKVIILD 129
Query: 418 ECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASR 477
EC L + ++L +LE +VVFV+ T E+ K+P + +SR Q++ F +I I
Sbjct: 130 ECHSLSQAAFNSLLKTLEQPPSNVVFVLCTTEVHKVPLTIISRCQRFDFRRIDTKTITEH 189
Query: 478 LRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDD 537
L+ I V E I+ AL +A S+G +RDA LLDQLS +G +I Y + G V +
Sbjct: 190 LQAIAVAEQIDITPEALQLVAQTSHGCLRDALTLLDQLSNIGTQIADVQVYLMAGTVPEP 249
Query: 538 ELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE---- 593
ELLDLLD + + + ++L+ DP + + ++ D+L K D +E
Sbjct: 250 ELLDLLDNISTGNVTACCRIIQKLVEQGKDPSLVYLDILRILKDLLVIKTCPDATELEWQ 309
Query: 594 -----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
R +H +Q A+K+L+ + +Q++ Q WL V +L+L+
Sbjct: 310 ATEKWERLLSLVQHWKAISIQD---AIKLLNSSSRQMKQQSSQ-LWLEVTILELAKIPLP 365
Query: 649 LDLN-----DSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGT 703
L N D Y D +H + P ++ L K AL G
Sbjct: 366 LAANNKPTADPWYSWEYPSDAIAWAH-QLLPHLGYREL---------WEKWNALATINGK 415
Query: 704 LESIWKTATELCQSNSLKTFLRK 726
W A E + N T + K
Sbjct: 416 KAPAWVKAIEEARFNKQLTTVGK 438
>gi|347550041|ref|YP_004856369.1| putative DNA polymerase III subunits gamma and tau [Listeria
ivanovii subsp. ivanovii PAM 55]
gi|346983112|emb|CBW87160.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria
ivanovii subsp. ivanovii PAM 55]
Length = 577
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/360 (32%), Positives = 193/360 (53%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + + P +++K++I
Sbjct: 65 EHGHDGEPCNECDICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL I EE +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G +
Sbjct: 185 GRLEFILKEEKTPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVDDALEITGSI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L L+ A D + + L+ DP++L+ L D+L + + E
Sbjct: 245 AQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEET 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F A+ K+ +KIL+ ++Q+R S H ++ VAL+QL+ + ++
Sbjct: 305 LERALIDDEFVSLAKRANSFKIYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQTV 364
>gi|331270686|ref|YP_004397178.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
BKT015925]
gi|329127236|gb|AEB77181.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
BKT015925]
Length = 541
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 149/525 (28%), Positives = 268/525 (51%), Gaps = 36/525 (6%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+E+VGQ + +L + + + YLF G RGTGKTS ++IF+ A+NC
Sbjct: 5 ALYREWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C ++G + DV E+D+ N+ D + L++ PP ++K++I
Sbjct: 65 LNPQDGEPCNECDMCKKINAGLAIDVSEMDAASHNKVDDIRDLIEEVKYPPREGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +IK DI
Sbjct: 125 MDEAHMLTQGAVNAFLKTLEEPPENVVFILATTDPQKLPITILSRCQRFDFKRIKSDDIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL +I E+ I D +L IA S+G++RDA +LDQ +S+ K+ ++G+V
Sbjct: 185 QRLIKITKEQGIFADNKSLSLIARMSDGAMRDALSILDQAISMGNGKVDYEQVINMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE----- 589
++D LL L + + D N++ +++ D I + + + +++ K +
Sbjct: 245 TNDNLLKLTNAIIDKDVENSIRIIDDVVYGGKDINLFIKDMIHHMRNLMMVKVSQNPEDV 304
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-- 646
D SE NF + +++ ++++ R ++IL E E+Q + SK +L +A++++ E
Sbjct: 305 LDMSEENINFLKEQSTKIRIEEIMRCIRILQECEEQSKWSKQGRIYLELAIIKMCKIEYD 364
Query: 647 SSLDLNDSKLCLRYAHDKDGDSHCTISPRDS--------FKHLVRGSCVGDKANKLGALE 698
+S ++ S+L KDG + TI+ +++ K +V+ S V K KL E
Sbjct: 365 TSKEVLLSRLNKLENIIKDG--NITINTKENNTRDKCSENKSMVKASTV--KKQKLDIKE 420
Query: 699 -------DYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNH---GLAVAELEFHH 748
D K T+E + K+ ++ + K + L + +V G+ + E +
Sbjct: 421 EVIEVNSDSKITVEDVKKSWKDILEVFKAKRHMVLYASLITGNVTECTGGVITIKYEQQY 480
Query: 749 RDYVSRAEK--SWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPS 791
+ R EK S K++ L V I+ + V KE + S
Sbjct: 481 AFNIKRLEKEDSRKIVEEIFSHELKEKVRIKYI---VDKKEERKS 522
>gi|434389958|ref|YP_007125664.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
gi|428262536|gb|AFZ28484.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
Length = 447
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 193/360 (53%), Gaps = 8/360 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI+ + YLF GPRGTGKTS++RI A +LNC
Sbjct: 19 LHLKYRPQSFTELVGQRAIATTLTNAITSQRIAPAYLFTGPRGTGKTSSARILAKSLNCQ 78
Query: 357 --SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
PCG C C S G S DV E+D+ + + + ++ + P +SR+K+F
Sbjct: 79 HGDFPTPTPCGQCNSCTGISKGLSLDVVEIDAASNSGVENIRQIIDRTHIIPVNSRYKVF 138
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DE L + + +L +LE ++VVF++ T E+ K+P + +SR Q++ F +I D+
Sbjct: 139 VLDEVHSLSSQGFQALLKTLEEPPKNVVFILCTTEIHKVPATIISRCQRFDFKRIGVEDM 198
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I EE IN AL +A S+G +RD++ LLDQLSLL I + +E++G V
Sbjct: 199 VQHLNHIVTEELINITPEALRLVAQISSGCLRDSQCLLDQLSLLNITIDQNWVWEMVGNV 258
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ +LL +++ +D+++ + R L+ +P+ ++ L + D+L K +
Sbjct: 259 PEYKLLTMVERIAENDSNSIITIIRNLLEWGKEPLVILQNLTSFYRDMLIAKTSPSSKEM 318
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+E + + + + + A + L + E Q+++S WL V +L L + +S
Sbjct: 319 VMLTEDTWQQLCQISKDWETTTILAAQQHLRQCEVQVKLSTQPQLWLEVGILGLLPATNS 378
>gi|313894455|ref|ZP_07828020.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 158 str. F0412]
gi|313441279|gb|EFR59706.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 158 str. F0412]
Length = 856
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 121/361 (33%), Positives = 182/361 (50%), Gaps = 6/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C SG+S DV E+D+ D V +L +S P R K+FI
Sbjct: 65 EHGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRESVKFMPVEGRKKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DIA
Sbjct: 125 IDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL + +E D AA IA ++G +RDA +LDQ + + IT + ELIG+V
Sbjct: 185 QRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATGTITPQVVEELIGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
S + ++ LD + D + + + D Q++ L + +L GK D E
Sbjct: 245 SKEWIIHFLDALRNGDGPKLLSYIHDALAEGRDATQIMDALIQHVRALLVGKVATDADEL 304
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
A K F D +L++ ++ + + T + + LL L + S+
Sbjct: 305 KVYDAFKAEFLAQAESIDFNELNQYVRSAQSIMNDAKQVDNPRTIIEMGLLVLCAKLGSV 364
Query: 650 D 650
D
Sbjct: 365 D 365
>gi|430742263|ref|YP_007201392.1| DNA polymerase III subunits gamma and tau [Singulisphaera
acidiphila DSM 18658]
gi|430013983|gb|AGA25697.1| DNA polymerase III, subunit gamma/tau [Singulisphaera acidiphila
DSM 18658]
Length = 589
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 199/364 (54%), Gaps = 8/364 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
+++++RP F+++VGQ+ VV SL +AI VT YLF G RG GKTS +RIFA LNC+
Sbjct: 13 VARRYRPQRFEDVVGQDNVVESLRNAIKLNRVTHAYLFSGTRGVGKTSIARIFAKCLNCV 72
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+PC C C ++G DV E+D N + V L ++ L P +RFKI+ I
Sbjct: 73 KGPTDQPCLQCDICQAIATGEDVDVLEIDGASNNGVESVRELRQNTGLRPSRARFKIYYI 132
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F T E K+P + LSR Q+Y F I I +
Sbjct: 133 DEVHMLSTGAFNALLKTLEEPPPHVKFFFATTEPGKIPVTVLSRCQRYDFAGITPEQIVA 192
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L IC+ E I + AL IA ++ GS+RDA+ L++Q LS G+++T+ + L+G S
Sbjct: 193 TLSDICIREQIQAEPEALQTIARRAGGSMRDAQSLVEQLLSSAGERLTVEAVHRLLGTAS 252
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSK-IDPMQLISQLANLIMDIL-----AGKCLE 589
D+ +LD+LD AL+ S V+R + ++ I P L++ + + + D++ A + +
Sbjct: 253 DERILDVLD-ALADHDSGAVLRLVDAAANQGIQPTDLLNGVIDFLRDVMVLSAGADQTVL 311
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ ++ + + AL+IL E +LR S H T + V L++++ E+
Sbjct: 312 TATPRQRPRLQAVVDRWPLDSILAALQILPEARSKLRGSPHGRTIIEVGLVKVARLENLA 371
Query: 650 DLND 653
+++D
Sbjct: 372 EISD 375
>gi|294508590|ref|YP_003572649.1| DNA polymerase III subunit tau [Salinibacter ruber M8]
gi|294344919|emb|CBH25697.1| DNA polymerase III subunit tau [Salinibacter ruber M8]
Length = 759
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 190/365 (52%), Gaps = 11/365 (3%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F E+V Q V +L +AI + YLF GPRG GKT+A+RI A A+NC +
Sbjct: 41 ARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAINCET 100
Query: 358 LEDQK-----PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
+++ PC C C F +GRS +V E+D+ N+ D + L + +PP + K
Sbjct: 101 PREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNNKVDDIRELREKVRIPPQGDQKK 160
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
++I+DE +L + + +L +LE H +F+ T E K+ + LSR Q++ F +I
Sbjct: 161 VYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRRIPVP 220
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELI 531
+I RLR IC E + D+ +L +A K NG++RDA DQ LSL G + + +
Sbjct: 221 EIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAFDQALSLCGATLEYGELTQAL 280
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN-----LIMDILAGK 586
G+V D L D + DT+ + R ++RS D +++ LA L+ L G+
Sbjct: 281 GVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLVGLAEHLRNLLVAHSLGGE 340
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
LE+ +E+ + + D L R L + ++TE ++ S L LL+++
Sbjct: 341 ALEEVAESTRTRYADEAERFDEADLLRLLTMAADTEDDIKQSPQPRLTLETTLLKMAQLR 400
Query: 647 SSLDL 651
S DL
Sbjct: 401 RSADL 405
>gi|20806577|ref|NP_621748.1| DNA polymerase III subunit gamma and tau [Thermoanaerobacter
tengcongensis MB4]
gi|20515019|gb|AAM23352.1| DNA polymerase III, gamma/tau subunits [Thermoanaerobacter
tengcongensis MB4]
Length = 518
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 199/364 (54%), Gaps = 9/364 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E+VGQ+ +VR+L + I G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPKSFSEVVGQDHIVRTLRNQIKMGRIGHAYLFTGTRGTGKTSVAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C ++G + DV E+D+ N + V L +S P +++K++I
Sbjct: 64 LNPKDGEPCNSCEVCQAINTGTTMDVLEIDAASNNSVNDVRELRESVIYSPSLTKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E +KLP + LSR Q++ F KI IA
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPRHVIFILATTEPEKLPDTILSRCQRFDFKKIPTKQIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L RIC + I +Q + IA NGS+RDA LL+Q S IT E++G+
Sbjct: 184 QNLERICQDSGIQIEQNGIRAIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEILGVA 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+++ L LLD D ++ + +++ ID + ++ D++ K D E
Sbjct: 244 NEEMLFSLLDHIYEKDAVASLQQLDKILSYGIDLGNFLRSFTYMLRDMVIYKTGGD--EL 301
Query: 595 RKNFFG-KHTSEADMQK-----LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ +G + T +A QK L+ AL+ + ++++R + T L + +L+L E S
Sbjct: 302 IEILYGDQETIKAKSQKYSIGFLTNALEKFTALQREIRYAVSPVTLLELTILRLIRPEIS 361
Query: 649 LDLN 652
D+
Sbjct: 362 YDMG 365
>gi|22298675|ref|NP_681922.1| DNA polymerase III subunits gamma and tau [Thermosynechococcus
elongatus BP-1]
gi|22294855|dbj|BAC08684.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus
elongatus BP-1]
Length = 603
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 192/358 (53%), Gaps = 12/358 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L A+ + + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAKSLNCL 65
Query: 357 --SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S PCG C C ++G S DV E+D+ D + L++ A P R+K++
Sbjct: 66 RSSKPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE VVF++ T + ++ + +SR Q++ F +I G++
Sbjct: 126 VIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRIPLGEM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L+ I +E I+ + AL +A S G +RDAE LLDQLSL ++IT+ ++L G V
Sbjct: 186 VAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLYPERITVEQVWQLTGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED---- 590
+ +L LL D + + R+L+ DP+ ++ LA+L D+L K +
Sbjct: 246 PEQDLRQLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAKTVPQRRDL 305
Query: 591 ---CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+E + +EA ++++ A + L E Q++ S WL +++L L +
Sbjct: 306 VALTAETWQALIA--LAEAWSVEEILHAQEHLRTCEGQIKQSNQPRLWLEISILGLMT 361
>gi|333895907|ref|YP_004469781.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111172|gb|AEF16109.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 530
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 196/361 (54%), Gaps = 4/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E++GQN +VR+L + I G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPKSFCEVLGQNHIVRTLKNQIKSGRIGHAYLFCGTRGTGKTSVAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C+ C ++ D+ E+D+ N D V L + P S ++K++I
Sbjct: 64 PNSVDGEPCNKCQICESANNNSLMDIIEIDAASNNSVDDVRELRDNIIYAPSSCKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L G + +L +LE QH +F++ T E +K+P + LSR Q++ F +I I+
Sbjct: 124 IDEVHMLSGSAFNALLKTLEEPPQHAIFILATTEPNKIPATILSRCQRFDFKRISSKVIS 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+++I + IN D A+ IA NGS+RDA +L+Q + +T +++G V+
Sbjct: 184 QNIKKIAEDSQINIDGKAIALIAKHGNGSMRDAISILEQCASYSDVLTYDDVCDILGTVN 243
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL----EDC 591
DD L L++ D + + +LM ID L+ L + + D++ K E+
Sbjct: 244 DDTLFALVNSLNDRDGKEIIKQIDKLMLYGIDVNNLVKALLSFLRDVIVYKTCGDESEEI 303
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
E N + S DM LS AL+ L + + ++R ++ L + LL+L + E S D+
Sbjct: 304 LETEINDVIEKASLFDMAFLSNALEKLIDLQGKIRYAQSPRIMLEITLLKLINPEISPDI 363
Query: 652 N 652
+
Sbjct: 364 D 364
>gi|83814225|ref|YP_446655.1| DNA polymerase III subunits gamma and tau [Salinibacter ruber DSM
13855]
gi|83755619|gb|ABC43732.1| DNA polymerase III, subunits gamma and tau, putative [Salinibacter
ruber DSM 13855]
Length = 728
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 190/365 (52%), Gaps = 11/365 (3%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F E+V Q V +L +AI + YLF GPRG GKT+A+RI A A+NC +
Sbjct: 10 ARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAINCET 69
Query: 358 LEDQK-----PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
+++ PC C C F +GRS +V E+D+ N+ D + L + +PP + K
Sbjct: 70 PREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNNKVDDIRELREKVRIPPQGDQKK 129
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
++I+DE +L + + +L +LE H +F+ T E K+ + LSR Q++ F +I
Sbjct: 130 VYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRRIPVP 189
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELI 531
+I RLR IC E + D+ +L +A K NG++RDA DQ LSL G + + +
Sbjct: 190 EIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAFDQALSLCGATLEYGELTQAL 249
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN-----LIMDILAGK 586
G+V D L D + DT+ + R ++RS D +++ LA L+ L G+
Sbjct: 250 GVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLVGLAEHLRNLLVAHSLGGE 309
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
LE+ +E+ + + D L R L + ++TE ++ S L LL+++
Sbjct: 310 ALEEVAESTRTRYADEAERFDEADLLRLLTMAADTEDDIKQSPQPRLTLETTLLKMAQLR 369
Query: 647 SSLDL 651
S DL
Sbjct: 370 RSADL 374
>gi|37521178|ref|NP_924555.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus
PCC 7421]
gi|35212174|dbj|BAC89550.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus
PCC 7421]
Length = 632
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/363 (31%), Positives = 188/363 (51%), Gaps = 18/363 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ++VGQ +V +L +A+ G + YLF G RGTGKT+ +R+ A ALNC+
Sbjct: 6 LHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKALNCI 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PCG C +C ++G + DV E+D+ D + L++ A P SR K++I+
Sbjct: 66 HGPTPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIERAQFAPVQSRQKVYIL 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV FV+ T + K+ + +SR Q++ F +I D+
Sbjct: 126 DEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRFDFRRIPLTDMVK 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L I +E I+ + A++ +A + G +RDAE LLDQL+LL I ++L+G V +
Sbjct: 186 HLEEIAWKEDIDIEHEAVELVAQIAQGGLRDAESLLDQLALLEGTIGAERIWQLVGAVPE 245
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
ELL + + + D++ + + R L+ S +P+Q++ L D+L D R+
Sbjct: 246 RELLVIGECIQAGDSTRLIEQVRRLLDSGKEPLQVLQDLLGFYRDLLIAHTAPD----RR 301
Query: 597 NFFGKHTSEADMQKLSRALKILS------------ETEKQLRMSKHQTTWLTVALLQLSS 644
+ + A Q++ K LS + E Q++ S WL V LL L +
Sbjct: 302 DLVA--VTAASWQQMCERAKTLSIPQLLALQERLRQAEPQIKTSTQPRLWLEVGLLGLLA 359
Query: 645 SES 647
S S
Sbjct: 360 SPS 362
>gi|304440577|ref|ZP_07400463.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304370953|gb|EFM24573.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 589
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 197/370 (53%), Gaps = 21/370 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ+ V+ S+ + V+ Y+F G RGTGKTS ++I A A+NC
Sbjct: 4 ALYRKYRSRTFDEVVGQDQVINSIKYQVKNSTVSHAYIFSGTRGTGKTSTAKILARAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C G + DV E+D+ N D + L + AF PP +S++K++I
Sbjct: 64 EHPIDGNPCNECETCKSILRGTNLDVVEMDAASNNGVDDIRDLREKAFYPPSTSKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L LE +H++F++ T E++++P++ LSR+Q+Y F +I I+
Sbjct: 124 IDEVHMLSKGAFNALLKILEEPPKHLIFILATTEIERVPQTILSRTQRYTFKRISIDTIS 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
+ I +E + D+A +D IA ++GS+RDA LLD++ + I+ E++G+
Sbjct: 184 KNISEILAKEGKSIDEAGIDLIAQMADGSMRDAVSLLDRVVAINDNNISYDKIIEVLGVT 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++D L +L L+SD S+ ++ L D M LI + + +IL K L
Sbjct: 244 TEDTLFELATSILNSDASSIIMSVANLADDGKDMMVLIDGIVSFFRNILIAKNL------ 297
Query: 595 RKNFFGKHTSEADMQK------------LSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
N+ K DM + + +KILSET+ + R ++ T L ALL++
Sbjct: 298 --NYPRKIIRVRDMDRYVAIANAFSNSEILNIIKILSETKARSRYITNKRTMLEAALLEI 355
Query: 643 SSSESSLDLN 652
+S LN
Sbjct: 356 VASRQDDILN 365
>gi|440680875|ref|YP_007155670.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
gi|428677994|gb|AFZ56760.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
Length = 505
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 187/352 (53%), Gaps = 13/352 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L QK+RP ELVGQ + +L +AI + YL G RGTGKTS +RIFA +LNC
Sbjct: 5 ALHQKYRPQTLAELVGQPYIKTALTNAIKHLQIAPAYLLTGSRGTGKTSTARIFAKSLNC 64
Query: 356 LSLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
L+ + KPCG+C+ C + S DV E+D+ N D +L++ L P + R++I
Sbjct: 65 LNTKKPTDKPCGICQSCRSIETSNSLDVSEIDAASNNGVDDARALIERCTLAPIAGRYRI 124
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
FI+DEC L G + +L +E HVVF++ T E K+ + +SR Q ++F +
Sbjct: 125 FILDECHCLTGNAFNALLKCIEEPPPHVVFILCTTEQHKVLPTIVSRCQVFNFRTLSIQT 184
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I LR I E+I+ ++ AL IA S+G +RDA LL Q SLL IT E++G
Sbjct: 185 IVQHLRIIADAESISINEEALIAIARLSDGGLRDALQLLGQASLLDVDITAHHVMEIVGG 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------- 586
V++ EL+ +L +++T N + AREL+ S P +IS L D+L K
Sbjct: 245 VTEAELMAILQAISTNNTFNLLQVARELVDSGKTPKLIISNLLQTYRDLLIIKSAPQEQA 304
Query: 587 CLEDC-SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
L C S + F KH + + L+ +L L + E LR + + WL V
Sbjct: 305 LLTGCVSHTQLKAFAKH---WNFETLNLSLAELQKAENYLRYTVNAAVWLEV 353
>gi|425737929|ref|ZP_18856199.1| DNA polymerase III subunits gamma and tau [Staphylococcus
massiliensis S46]
gi|425481082|gb|EKU48244.1| DNA polymerase III subunits gamma and tau [Staphylococcus
massiliensis S46]
Length = 564
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/351 (32%), Positives = 191/351 (54%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQQFGDVVGQEHVTKTLQNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ + +PC C C + G + DV E+D+ N D + ++ P S+FK++I
Sbjct: 65 LNQSNGEPCNECDICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPEHAIFILATTEPHKIPPTIISRAQRFDFKAIGVEQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR + E+ I+++ AL FIA S G +RDA ++DQ G +TL A ++ G V
Sbjct: 185 ERLRYVATEQGIDYEDEALAFIAKVSEGGMRDALSIMDQAIAFGDDHLTLKDALDVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED--CS 592
++ L L +S D ++ R E + + +LI+ + + D + K E
Sbjct: 245 DEEALNGLFKEVVSGDVKSSFKRYHEFVSEGKEVNRLINDMIYFVRDTIVSKTTEQELTY 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A ++F ++ L + + I+++T +R S +Q L V L++LS
Sbjct: 305 DALQSF--------ELPTLYKMIDIINDTLVSIRFSVNQNVHLEVLLVKLS 347
>gi|323488472|ref|ZP_08093718.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis
MPA1U2]
gi|323397864|gb|EGA90664.1| DNA polymerase III subunit gamma/tau [Planococcus donghaensis
MPA1U2]
Length = 577
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 187/352 (53%), Gaps = 6/352 (1%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F E+ GQ V ++L +A+ T YLF GPRGTGKTSA++IFA ALNC
Sbjct: 10 YRPQSFSEMTGQTHVKQTLQNALLYNKTTHAYLFSGPRGTGKTSAAKIFAKALNCEQAPT 69
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E D+ +R + + +++ P +SRFKI+IIDE
Sbjct: 70 AEPCNECTSCRSINEGSNTDVIEFDAASNSRVEEMREIIEKVRFSPANSRFKIYIIDEVH 129
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE +HVVF++ T E KLP + +SR Q++ F DI SR+
Sbjct: 130 MLSNSAFNALLKTLEEPPEHVVFILATTEPHKLPLTIISRCQRFDFKSHTQVDIVSRMVE 189
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDEL 539
+ + I +++ L IA + G +RDA LLDQ +S G ++T+ A + G VS D
Sbjct: 190 VLTDAKIPYNEQVLKIIAQAAAGGMRDALSLLDQVVSFSGDEMTVEDALLVTGSVSQDVF 249
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE-----A 594
+ + L+ D + +L+R DP++L+ D+L + D + A
Sbjct: 250 YGIAEALLAKDIGQALTLLEQLVRDGKDPVRLVEDFITFFRDLLLIQTAPDLHDMLELAA 309
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ F + + + L L ILS+T++++R S H ++ ALL+++ ++
Sbjct: 310 HEPRFEELANRFESTTLYNWLDILSKTQQEMRFSNHTKIYMETALLKMAQAD 361
>gi|417990568|ref|ZP_12631041.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei A2-362]
gi|410534489|gb|EKQ09136.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei A2-362]
Length = 565
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 194/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ S D +LI L + D+L A L D
Sbjct: 245 TTTVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYLRDLLVNQQAPTLLGD 304
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 305 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 362
>gi|116074345|ref|ZP_01471607.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916]
gi|116069650|gb|EAU75402.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916]
Length = 679
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 187/354 (52%), Gaps = 8/354 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQN + +L A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDQLVGQNAIAATLGHALRSNRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 SSDGPTPEPCGSCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLDAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L I +EAI A+ +A ++ G +RDAE LLDQLSLL I ++L+G V
Sbjct: 188 EAHLTWIAEQEAIPIQPEAVHVVAQRAQGGLRDAESLLDQLSLLPAPIEADAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED---- 590
+ +L+ L + S D V +R L+ DP ++ LA ++ D++ D
Sbjct: 248 PEQDLIALAEALASGDPLQLVESSRSLLDRGRDPGAVLQGLAGILRDLVLMAAAPDRPEL 307
Query: 591 --CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
S ++ + Q+L + L +E+QLR+S WL V L+ L
Sbjct: 308 TSVSPQFRDQLPELAKRIGRQRLLQWQARLRGSEQQLRLSVQPRLWLEVLLMGL 361
>gi|70727533|ref|YP_254449.1| DNA polymerase III subunits gamma and tau [Staphylococcus
haemolyticus JCSC1435]
gi|68448259|dbj|BAE05843.1| DNA polymerase III gamma and tau subunits [Staphylococcus
haemolyticus JCSC1435]
Length = 571
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 190/351 (54%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNPQDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGTEQIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
RLR + E+ +++D AL+FIA S G +RDA ++DQ G + +TL A ++ G V
Sbjct: 185 DRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALDVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+ L +L + + N R + + + +LI+ + + D + K + + +E
Sbjct: 245 DEAALNELFKDVIDGNVKNAFTRYHQFISEGKEVNRLINDMIYFVRDTIMNKTVNNHAEF 304
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
A NF D+ L + I+++T +R S +Q V L++++
Sbjct: 305 DALMNF--------DLDMLYHMIDIINDTLVSIRFSVNQNVHFEVLLVKIA 347
>gi|325294717|ref|YP_004281231.1| DNA polymerase III subunits gamma and tau [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065165|gb|ADY73172.1| DNA polymerase III, subunits gamma and tau [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 463
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 186/349 (53%), Gaps = 18/349 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ +K+RP+ F E+ GQ + +L +AI G Y+F GPRG GKT+ +RI A ALNC
Sbjct: 5 AIPRKYRPSKFSEVTGQEYITNTLKNAIKTGRFAHAYVFAGPRGVGKTTTARIVAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
SL D +PC C C S G DV E+D+ D++ L +S P + K++I
Sbjct: 65 ESLIDGEPCNECSNCQAISKGSFPDVIEIDAATNRGIDQIRELRESVNYAPVKGKKKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +HVVF++ T E+DK+P + LSR QK+ F +I +
Sbjct: 125 IDEFHMLTKEAFNALLKTLEEPPEHVVFILATTEIDKIPPTILSRCQKFVFRRIPKDLMV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
L+RIC +E +++++ AL IA S G +RDAE LLDQ LG + S E +G++
Sbjct: 185 ETLKRICEKEDVSYEEEALYLIATASEGCMRDAESLLDQAIALGNGLVKTSYISEFLGVL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ E+ ++L L+ S + + L +P+ ++ QL LE
Sbjct: 245 TGKEIFEILSLSFSGKKRELREKLKRLESQGYNPLFIVKQL------------LEKVE-- 290
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R+ GK+ SE ++L A KILS+ K + + T L L +LS
Sbjct: 291 REFIEGKNFSE---EELLAAFKILSDAHKVVATHPYPYTALFFYLFKLS 336
>gi|418003048|ref|ZP_12643151.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei UCD174]
gi|410543040|gb|EKQ17433.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei UCD174]
Length = 565
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 194/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ S D +LI L + D+L A L D
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYLRDLLVNQQAPTLLGD 304
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 305 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 362
>gi|116495715|ref|YP_807449.1| DNA polymerase III, subunit gamma/tau [Lactobacillus casei ATCC
334]
gi|417981477|ref|ZP_12622143.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei 12A]
gi|417987559|ref|ZP_12628114.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei 32G]
gi|417993892|ref|ZP_12634229.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei CRF28]
gi|417997057|ref|ZP_12637324.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei M36]
gi|417999896|ref|ZP_12640101.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei T71499]
gi|418005990|ref|ZP_12645959.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei UW1]
gi|418011629|ref|ZP_12651383.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei Lc-10]
gi|116105865|gb|ABJ71007.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei ATCC
334]
gi|410521875|gb|EKP96830.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei 12A]
gi|410522879|gb|EKP97817.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei 32G]
gi|410530904|gb|EKQ05664.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei CRF28]
gi|410533763|gb|EKQ08429.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei M36]
gi|410538452|gb|EKQ13006.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei T71499]
gi|410545010|gb|EKQ19318.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei UW1]
gi|410551887|gb|EKQ25927.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei Lc-10]
Length = 565
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 194/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ S D +LI L + D+L A L D
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYLRDLLVNQQAPTLLGD 304
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 305 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 362
>gi|409998064|ref|YP_006752465.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei W56]
gi|406359076|emb|CCK23346.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei W56]
Length = 578
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 194/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 18 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 77
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 78 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 137
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 138 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 197
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 198 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 257
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ S D +LI L + D+L A L D
Sbjct: 258 TTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYLRDLLVNQQAPTLLGD 317
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 318 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 375
>gi|289551726|ref|YP_003472630.1| DNA polymerase III subunits gamma and tau [Staphylococcus
lugdunensis HKU09-01]
gi|315660106|ref|ZP_07912964.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
lugdunensis M23590]
gi|385785273|ref|YP_005761446.1| DNA polymerase III subunit tau [Staphylococcus lugdunensis N920143]
gi|418415671|ref|ZP_12988876.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289181257|gb|ADC88502.1| DNA polymerase III subunits gamma and tau [Staphylococcus
lugdunensis HKU09-01]
gi|315495007|gb|EFU83344.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
lugdunensis M23590]
gi|339895529|emb|CCB54858.1| DNA polymerase III, tau subunit [Staphylococcus lugdunensis
N920143]
gi|410875127|gb|EKS23057.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 576
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/351 (31%), Positives = 189/351 (53%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQSFSDVVGQEHVTQTLKNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C ++G + DV E+D+ N D + ++ P S+FK++I
Sbjct: 65 LNSNDGEPCNECAICKGITTGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAINSEQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR + E+ I++D AAL+FIA S G +RDA ++DQ G +TL A ++ G V
Sbjct: 185 ERLRFVADEQQIDYDIAALEFIAKASEGGMRDALSIMDQAIAFGDDHLTLKDALDVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED--CS 592
+ L DL ++ D R + + +LI+ + + D + K ++
Sbjct: 245 DEAALNDLFKDIVNGDVREAFTRYHHFISEGKEVNRLINDMIYFVRDTIMSKTADESMTY 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A +F D++ L + I+++T +R S +Q V L++++
Sbjct: 305 DALADF--------DLEMLYHMIDIINDTLVSIRFSVNQNVHFEVLLVKIA 347
>gi|227533726|ref|ZP_03963775.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227188710|gb|EEI68777.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 578
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 194/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 18 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 77
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 78 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 137
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 138 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 197
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 198 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 257
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ S D +LI L + D+L A L D
Sbjct: 258 TTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYLRDLLVNQQAPTLLGD 317
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 318 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 375
>gi|456013027|gb|EMF46702.1| DNA polymerase III subunits gamma and tau [Planococcus
halocryophilus Or1]
Length = 591
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 187/352 (53%), Gaps = 6/352 (1%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F E+ GQ V ++L +A+ T YLF GPRGTGKTSA++IFA ALNC
Sbjct: 24 YRPQSFSEMTGQMHVKQTLQNALLYNKTTHAYLFSGPRGTGKTSAAKIFAKALNCEQAPT 83
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E D+ +R + + +++ P +SRFKI+IIDE
Sbjct: 84 AEPCNECTSCKSINEGSNTDVIEFDAASNSRVEEMREIIEKVRFSPANSRFKIYIIDEVH 143
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE +HVVF++ T E KLP + +SR Q++ F DI SR+
Sbjct: 144 MLSNSAFNALLKTLEEPPEHVVFILATTEPHKLPLTIISRCQRFDFKSHTQVDIVSRMVE 203
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDEL 539
+ + I +++ L IA + G +RDA LLDQ +S G ++T+ A + G VS D
Sbjct: 204 VLTDAEIPYNEQVLKIIAQAAAGGMRDALSLLDQVVSFSGDEMTVEDALLVTGSVSQDVF 263
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE-----A 594
+ + L+ D + +L+R DP++L+ D+L + D + A
Sbjct: 264 YGIAEALLAKDIGQALTLLEQLVRDGKDPVRLVEDFITFFRDLLLIQTAPDLHDMLELAA 323
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ F + + + L + ILS+T++++R S H ++ ALL+++ ++
Sbjct: 324 HEPRFEELANRFEPSTLYNWIDILSKTQQEMRFSNHTKIYMETALLKMAQAD 375
>gi|191639203|ref|YP_001988369.1| DNA-directed DNA polymerase III gamma/tau subunit [Lactobacillus
casei BL23]
gi|385820954|ref|YP_005857341.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei LC2W]
gi|385824137|ref|YP_005860479.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei BD-II]
gi|190713505|emb|CAQ67511.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
casei BL23]
gi|327383281|gb|AEA54757.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei LC2W]
gi|327386464|gb|AEA57938.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei BD-II]
Length = 565
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 194/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ S D +LI L + D+L A L D
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYLRDLLVNQQAPTLLGD 304
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 305 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 362
>gi|418008804|ref|ZP_12648655.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei UW4]
gi|410545760|gb|EKQ20047.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei UW4]
Length = 565
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 194/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVAGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ S D +LI L + D+L A L D
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYLRDLLVNQQAPTLLGD 304
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 305 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 362
>gi|418635755|ref|ZP_13198117.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
lugdunensis VCU139]
gi|374841535|gb|EHS05004.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
lugdunensis VCU139]
Length = 576
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/351 (31%), Positives = 189/351 (53%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQSFSDVVGQEHVTQTLKNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C ++G + DV E+D+ N D + ++ P S+FK++I
Sbjct: 65 LNSNDGEPCNECAICRGITTGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAINSEQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR + E+ I++D AAL+FIA S G +RDA ++DQ G +TL A ++ G V
Sbjct: 185 ERLRFVADEQQIDYDIAALEFIAKASEGGMRDALSIMDQAIAFGDDHLTLKDALDVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED--CS 592
+ L DL ++ D R + + +LI+ + + D + K ++
Sbjct: 245 DEAALNDLFKDIVNGDVREAFTRYHHFISEGKEVNRLINDMIYFVRDTIMSKTADESMTY 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A +F D++ L + I+++T +R S +Q V L++++
Sbjct: 305 DALADF--------DLEMLYHMIDIINDTLVSIRFSVNQNVHFEVLLVKIA 347
>gi|418013954|ref|ZP_12653573.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei Lpc-37]
gi|410555045|gb|EKQ29008.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei Lpc-37]
Length = 565
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 194/358 (54%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C ++G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTQARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK----CLED 590
+ L L L+ D + + +L+ S D +LI L + D+L + L D
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDAGRLIEDLIEYLRDLLVNQQTPTLLGD 304
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ + K SE +++ + +L+ T++QLRM+ H +L VA ++LS + +
Sbjct: 305 LEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETTT 362
>gi|78780135|ref|YP_398247.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT
9312]
gi|78713634|gb|ABB50811.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT
9312]
Length = 579
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 194/355 (54%), Gaps = 14/355 (3%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
QK+RP+ DELVGQN + +L A+ ++ YLF+GPRGTGKTS++RIFA +LNC +
Sbjct: 10 QKYRPSNLDELVGQNFISITLKQALLTKKISPAYLFNGPRGTGKTSSARIFAKSLNCQAF 69
Query: 359 EDQK--PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
E+ PCG C C + G + D+ E+D+ + + +++ A P +R+K+++I
Sbjct: 70 EEPTIHPCGKCDLCRQITDGNALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYVI 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DEC +L +L ++E VVF++ T +++ + SR QK+ F +I DI
Sbjct: 130 DECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIQSRCQKFDFRRISPSDIFQ 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L I +E+I ++ AL+ IA +SNG +RDA+ LL+QL+LL + IT++ L+G VS+
Sbjct: 190 HLSEIAEKESIKYEVQALNIIAKRSNGGMRDAQSLLEQLNLLPEGITINNIKNLLGEVSE 249
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
EL +L+ + ++ + +I +L +P Q+I L N+ D+L S+
Sbjct: 250 IELTNLIKSLIENNPESLIITCNKLYDDGNEPYQIIIGLLNITRDLLLHTTNNKYSDL-- 307
Query: 597 NFFGKHTSEADMQKLSRALKI---------LSETEKQLRMSKHQTTWLTVALLQL 642
++ + ++ K+S+ + L E QL+ S + WL + L L
Sbjct: 308 -YYTSDGFQDELDKISKTINKSTIINWHNHLRNIEYQLKTSDNPRLWLEIHLTGL 361
>gi|56750639|ref|YP_171340.1| DNA polymerase III subunits gamma and tau [Synechococcus elongatus
PCC 6301]
gi|81299721|ref|YP_399929.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942]
gi|56685598|dbj|BAD78820.1| DNA polymerase III gamma and tau subunits [Synechococcus elongatus
PCC 6301]
gi|81168602|gb|ABB56942.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942]
Length = 652
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 134/501 (26%), Positives = 234/501 (46%), Gaps = 25/501 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + R+L A+++ + YLF GPRGTGKTS++RI A +LNC
Sbjct: 6 LHHKYRPQCFADLVGQEAIARTLSQALAQQRIAPAYLFTGPRGTGKTSSARILAKSLNCQ 65
Query: 357 --SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
++ PCG C C + G + DV E+D+ D + L++ A P RFK++
Sbjct: 66 QSTVPTASPCGECEACRAIARGNALDVIEIDAASNTGVDNIRELIERAQFAPVQCRFKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE VVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLQAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L+ I +E+I + A+ +A + G +RDAE LLDQL LL +T ++L+G V
Sbjct: 186 TDHLQVIAQKESIEIEPTAIALVAQLAQGGLRDAESLLDQLGLLPPPVTPEAVWDLLGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ +LL LL+ ++D + R+L+ +P+ ++ L D+L + L
Sbjct: 246 PERQLLQLLEAIAANDPEALLTLIRQLLDRGREPLTVLQNLTAFSRDLLIARTAPQRRDL 305
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+EA + +++ + + L ++E Q++ + WL VALL L S +
Sbjct: 306 TTVTEATWQELCTFAEDWTPEQILQLQQHLRQSELQIKNTTQPRLWLEVALLGLLPSAQA 365
Query: 649 LDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGT----- 703
+ + + + + P ++ + V +
Sbjct: 366 -PVTTAPPAIAAPVTRPVSIPAAVVPAETPSSPAAVAPVAIPVAPAVTTTPPEVPAIAAA 424
Query: 704 ------LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEK 757
LE +W+ S + L++QG+L L G AV + +++S +
Sbjct: 425 APEPLNLEELWQRVLINIASRGTQMLLQQQGRL--LRCQAGQAVVSV---PPNWLSIVQG 479
Query: 758 SWKLIASTLQSVLGCNVEIRL 778
L+A Q+VLG + + L
Sbjct: 480 KRNLLAEAFQTVLGQAIAVEL 500
>gi|395241987|ref|ZP_10418987.1| DNA polymerase III, subunit gamma and tau [Lactobacillus pasteurii
CRBIP 24.76]
gi|394480735|emb|CCI85227.1| DNA polymerase III, subunit gamma and tau [Lactobacillus pasteurii
CRBIP 24.76]
Length = 577
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 192/355 (54%), Gaps = 3/355 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L ++I R ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSIVGQEAITETLKNSIKRNKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADKGALADIIEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPAHVVFILATTELQKVPATIISRTQRYNFKRISKQDLM 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E I ++ A+ IA ++G +RDA +LDQ LS +T A ++ G
Sbjct: 185 DRMVFILDQEKIAYEDQAISVIAQVADGGMRDALSILDQLLSYEQDSVTYQDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL--EDCS 592
+ +++ +L L TS + +A +L++ ++ +L +L +L + + D +
Sbjct: 245 AKEKIEQVLIDLLLDQTSQALAKAEQLLKDGATAKNILDELIDLASKVLINQKMGSSDQT 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
E FG+ + D QK+ + + + + LR + Q L V L+Q S+S +
Sbjct: 305 EFVTENFGQTVASIDPQKIFKLIDLANGALNDLRYTNQQQIPLEVFLVQSSTSAA 359
>gi|417659116|ref|ZP_12308726.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU045]
gi|329736044|gb|EGG72317.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU045]
Length = 568
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTYVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L R + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|397906212|ref|ZP_10507030.1| DNA polymerase III subunits gamma and tau [Caloramator australicus
RC3]
gi|397160729|emb|CCJ34365.1| DNA polymerase III subunits gamma and tau [Caloramator australicus
RC3]
Length = 533
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 222/423 (52%), Gaps = 17/423 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FDE+VGQ +V++L + I G ++ YLF G RGTGKTS +RIFA A+NC
Sbjct: 4 ALYRKWRPQNFDEVVGQEPIVKTLKNQIKAGHISHAYLFSGTRGTGKTSTARIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D PC C C+ + G D E+D+ NR + L+ + +PP +++K++I
Sbjct: 64 LNPIDGNPCNECEICSGINKGTLLDFIEIDAASNNRVENARDLIDTVSIPPSKAKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++ VF++ T + K+P + LSR Q+++F +IK +I
Sbjct: 124 IDEVHMLSTHAFNALLKTLEEPPEYAVFILATTDPQKVPVTILSRCQRFNFKRIKKDEIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIV 534
RL+ I E + ++ LD IA+ S+G++RDA LLDQL S + KI ++G+
Sbjct: 184 ERLKLIVNEIGVEIEENVLDLIASNSDGALRDALSLLDQLVSTVSGKIDYESVISILGLT 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S + + L+DL + D N++ +++ D I ++ + ++L K ++ SE
Sbjct: 244 SKENIFKLVDLIIEKDIQNSLKLVDKIILEGKDINNFIEEIIAHLRNLLMVKVSKNPSEI 303
Query: 595 ----------RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
KN G+ +SE M R + I E E + L +A+++
Sbjct: 304 IDASIDYIKELKNQAGRISSEEIM----RGINIFIEAENDAKTFMQPRIALEMAVIKFCR 359
Query: 645 SE--SSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKG 702
E +SL++ ++L K G+ + ++ R+ K + ++A K A E+
Sbjct: 360 IEYDTSLEVILNRLNRLEEAIKSGNVNINVNLREEHKKETKQILKVEEAAKQEAKEEAAL 419
Query: 703 TLE 705
T++
Sbjct: 420 TVD 422
>gi|406830133|ref|ZP_11089727.1| DNA polymerase III subunits gamma and tau [Schlesneria paludicola
DSM 18645]
Length = 592
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 186/358 (51%), Gaps = 15/358 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L+++FRP F E+VGQ V ++L +AI G V YLF G RG GKTS +RIFA ALNC
Sbjct: 8 LARRFRPQTFTEVVGQERVAQTLRNAIHDGRVAHAYLFTGARGVGKTSMARIFAKALNCP 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D PC +C +C S G+ DV E+D D + SL + + S+FKI+II
Sbjct: 68 DAVDGVPCNVCEQCRGISVGQDVDVSEIDGASNRGIDDIRSLRANVNIKSMRSKFKIYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + +L +LE V F+ T E +K+P + LSR Q++ F I +I
Sbjct: 128 DEVHMLTKEAFNALLKTLEEPPPMVKFIFCTTESNKVPDTILSRCQRFDFGTISTDNITI 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIVS 535
RLR++ E D+AAL+ +A ++ GS+RD++ L DQL G K+I+ + + L+G
Sbjct: 188 RLRQLAEAEGFQVDEAALELVARRAAGSMRDSQSLFDQLLAFGSKQISSADVHRLLGTAP 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL------- 588
DD L ++D + + ++R MR + QL D++ C
Sbjct: 248 DDRLTGMVDALIERRQGDALMRLDAAMREGVQLEAFTDQLVAYFRDLMVTACEATSIPLL 307
Query: 589 ---EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
DC ++ + +Q ++ A++IL+E + +++ + +AL+++S
Sbjct: 308 AVGSDC----RDLLRQQAQRWGLQTITTAMQILAEAKSRMQRVSYGRVLAELALVRIS 361
>gi|429204762|ref|ZP_19196045.1| DNA polymerase III subunits gamma and tau [Lactobacillus saerimneri
30a]
gi|428146985|gb|EKW99218.1| DNA polymerase III subunits gamma and tau [Lactobacillus saerimneri
30a]
Length = 580
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 197/356 (55%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +LVGQ ++ ++L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFADLVGQELITKTLRNALVTKQTSHAYLFCGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC C C ++GR DV E+D+ N + + + P + +K++I
Sbjct: 65 HQQKDGEPCNECETCRAITAGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQRFDFKRITLAALL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
R+ I ++ I +DQ AL IA + G +RDA +LDQ+ G+ ++TL A + G V
Sbjct: 185 HRMEYILQQKEIKYDQQALQVIAKAAEGGMRDALSILDQVLSFGENEVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ EL + L L+ DT+ +I ++L++ DP +LI L D+L + + EA
Sbjct: 245 TRQELHNYLAQVLNHDTAAALITIQKLLQDGKDPSRLIEDLIMYCRDLLLYQEAPEIVEA 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ + F + +L + + +L+E ++ +R + HQ+ +L V ++L+ +
Sbjct: 305 NRMGVIDDSFKEFAQATAADRLYQMIDVLNEQQENMRFTTHQSVYLEVMTVKLTQA 360
>gi|167748328|ref|ZP_02420455.1| hypothetical protein ANACAC_03072 [Anaerostipes caccae DSM 14662]
gi|167652320|gb|EDR96449.1| DNA polymerase III, subunit gamma and tau [Anaerostipes caccae DSM
14662]
Length = 529
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 202/373 (54%), Gaps = 22/373 (5%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +KFRP+ FDE+ GQ+ +V +L + + G + YLF G RGTGKTS +++ A A+N
Sbjct: 1 MALYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAVN 60
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C ED PCG+C C G S +V E+D+ N D + + + P S ++K+F
Sbjct: 61 CEHPEDGNPCGVCESCREIQEGSSMNVMEIDAASNNGVDNIRDIKEQVQYSPASGKYKVF 120
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q+Y F +I I
Sbjct: 121 IIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRITADVI 180
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIG 532
A RL + EE + ++ AL ++A ++GS+RDA LLDQ LGKK+T E++G
Sbjct: 181 ADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLLDQCIAFYLGKKLTYENVLEVLG 240
Query: 533 IVSDDELLDLLDLALSSDTS-------NTVIRARELMRSKIDPMQLISQLANLIMDILAG 585
V LLD L++D + V + REL + D I L NL +LAG
Sbjct: 241 TVDISVYARLLDSILANDVTEVIGIVGKVVEQGRELSQFITD---FIWYLRNL---LLAG 294
Query: 586 K------CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
K LE +E + + + T++ + + + R ++ILS+ Q+R S + VAL
Sbjct: 295 KGDASMEALEVSAE-QLSLMQEKTAQVEEETVIRYIRILSDLLNQIRFSTSKRVLAEVAL 353
Query: 640 LQLSSSESSLDLN 652
+++ + DL+
Sbjct: 354 IKMCRPQMETDLS 366
>gi|317504994|ref|ZP_07962942.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
15606]
gi|315663876|gb|EFV03595.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
15606]
Length = 599
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 192/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC +
Sbjct: 8 ARKYRPMTFDSVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEN 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+D + C +C C F+ RS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 68 PSQDGEACNVCESCKAFNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQIGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ G+
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNTIE 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I +D AL IA K++G +RDA + DQ S IT E + ++
Sbjct: 188 HLKSVAAKEGITYDDEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++D ALS+ S ++ ++ D LIS LA + ++L + L +
Sbjct: 248 SDYYFKIVDFALSNKVSEIMVLVNNILSKGFDGGNLISGLACHVRNVLMARDETTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE ++ + + + +Q L +ALK+L++ + + S ++ + + L+Q++
Sbjct: 308 TSEQQRKKYHEQAKKCPVQYLYQALKLLNQCDINYKQSSNKRLLVEITLIQVA 360
>gi|27469225|ref|NP_765862.1| DNA polymerase III subunits gamma and tau [Staphylococcus
epidermidis ATCC 12228]
gi|57866110|ref|YP_187710.1| DNA polymerase III, gamma and tau subunits [Staphylococcus
epidermidis RP62A]
gi|251811247|ref|ZP_04825720.1| DNA-directed DNA polymerase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282874603|ref|ZP_06283485.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis SK135]
gi|293367695|ref|ZP_06614347.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417909558|ref|ZP_12553294.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU037]
gi|417913571|ref|ZP_12557236.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU109]
gi|418605166|ref|ZP_13168495.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU041]
gi|418607212|ref|ZP_13170462.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU057]
gi|418609111|ref|ZP_13172279.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU065]
gi|418612290|ref|ZP_13175334.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU117]
gi|418618389|ref|ZP_13181260.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU120]
gi|418624171|ref|ZP_13186848.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU125]
gi|418626507|ref|ZP_13189105.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU126]
gi|419767994|ref|ZP_14294135.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-250]
gi|419772692|ref|ZP_14298720.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-K]
gi|420166176|ref|ZP_14672864.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM088]
gi|420170844|ref|ZP_14677400.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM070]
gi|420173005|ref|ZP_14679502.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM067]
gi|420182164|ref|ZP_14688305.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM049]
gi|420195620|ref|ZP_14701410.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM021]
gi|420197488|ref|ZP_14703211.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM020]
gi|420202871|ref|ZP_14708458.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM018]
gi|420207886|ref|ZP_14713372.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM008]
gi|420210538|ref|ZP_14715963.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM003]
gi|420211597|ref|ZP_14716956.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM001]
gi|420214800|ref|ZP_14720075.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05005]
gi|420217939|ref|ZP_14723064.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05001]
gi|420220707|ref|ZP_14725665.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH04008]
gi|420222665|ref|ZP_14727580.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH08001]
gi|420224747|ref|ZP_14729586.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH06004]
gi|420227608|ref|ZP_14732372.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05003]
gi|420230805|ref|ZP_14735484.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH04003]
gi|420233254|ref|ZP_14737871.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH051668]
gi|421608522|ref|ZP_16049738.1| DNA polymerase III subunits gamma and tau [Staphylococcus
epidermidis AU12-03]
gi|27316774|gb|AAO05949.1|AE016751_244 DNA polymerase III gamma and tau subunits [Staphylococcus
epidermidis ATCC 12228]
gi|57636768|gb|AAW53556.1| DNA polymerase III, gamma and tau subunits [Staphylococcus
epidermidis RP62A]
gi|251805208|gb|EES57865.1| DNA-directed DNA polymerase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281296527|gb|EFA89039.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis SK135]
gi|291318265|gb|EFE58659.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
epidermidis M23864:W2(grey)]
gi|341652862|gb|EGS76637.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU037]
gi|341655265|gb|EGS78997.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU109]
gi|374402864|gb|EHQ73879.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU041]
gi|374405706|gb|EHQ76625.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU057]
gi|374408984|gb|EHQ79789.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU065]
gi|374815887|gb|EHR80108.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU120]
gi|374819592|gb|EHR83712.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU117]
gi|374827895|gb|EHR91745.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU125]
gi|374831577|gb|EHR95314.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU126]
gi|383359025|gb|EID36462.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-K]
gi|383361420|gb|EID38793.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-250]
gi|394234231|gb|EJD79816.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM088]
gi|394239451|gb|EJD84892.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM070]
gi|394241271|gb|EJD86689.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM067]
gi|394250494|gb|EJD95679.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM049]
gi|394263119|gb|EJE07863.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM021]
gi|394265589|gb|EJE10240.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM020]
gi|394268890|gb|EJE13437.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM018]
gi|394275119|gb|EJE19511.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM008]
gi|394276150|gb|EJE20500.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM003]
gi|394280932|gb|EJE25203.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM001]
gi|394282928|gb|EJE27108.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05005]
gi|394285746|gb|EJE29816.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH04008]
gi|394286178|gb|EJE30204.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05001]
gi|394288619|gb|EJE32523.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH08001]
gi|394294427|gb|EJE38110.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH06004]
gi|394296227|gb|EJE39857.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH04003]
gi|394296459|gb|EJE40084.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05003]
gi|394300462|gb|EJE43966.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH051668]
gi|406655682|gb|EKC82105.1| DNA polymerase III subunits gamma and tau [Staphylococcus
epidermidis AU12-03]
Length = 568
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L R + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|383811331|ref|ZP_09966800.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 306 str. F0472]
gi|383356081|gb|EID33596.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 306 str. F0472]
Length = 604
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 198/353 (56%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC +
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEN 67
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
++ + C C C F+ GRS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 68 PTNEGEACNECESCKAFAEGRSYNIFELDAASNNSVENIKTLMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ +I +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E I +D+ AL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKAVAEKENIQYDEQALNIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE-----D 590
+D ++++LAL + S+ ++ ++ D LI+ LA+ + ++L K ++ +
Sbjct: 248 EDNYFNIINLALENKVSDIMVLLNNVINKGFDGGHLINGLASHVRNVLMAKDVQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE ++ + + + L ALKI+++ + + R S ++ + + L+Q++
Sbjct: 308 VSEQQRKRYQEQAQKCPTLFLYNALKIMNQCDVEYRQSSNKRLLVELTLIQVA 360
>gi|375087786|ref|ZP_09734132.1| DNA polymerase III, subunit gamma and tau [Dolosigranulum pigrum
ATCC 51524]
gi|374564062|gb|EHR35366.1| DNA polymerase III, subunit gamma and tau [Dolosigranulum pigrum
ATCC 51524]
Length = 579
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 191/353 (54%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD+++GQ+VVV++L +A+++G + YLF GPRGTGKTS ++I A A+NC
Sbjct: 5 ALYRVWRPQSFDDVLGQDVVVQTLKNAVAQGNTSHAYLFSGPRGTGKTSVAKILAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
ED +PC C C + G DV E+D+ N D + + + A P + +K++I
Sbjct: 65 PYAEDGQPCNECHLCTEITKGALGDVIEIDAASNNGVDEIRDIREKAQYAPTQAPYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPATIISRLQRFDFKRILPQVII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL + + I +D AL IA + G +RDA LLDQ LS + +++T+ A ++ G +
Sbjct: 185 ERLEHVLGADEITYDADALVVIANAAEGGMRDALSLLDQALSFMDEQLTVDDALQITGSI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + LLD + T + E++ DP + I L+ D+L + E
Sbjct: 245 TQERLLDYIQQIADRQTEVALSILSEVLAEGKDPARFIEDTILLVRDMLLYQQNNGGIEP 304
Query: 595 RKNFFGKHTSEADM----QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ G+ E + R +++ +ET ++LR S H +L VA ++L+
Sbjct: 305 KLAIIGEPFQEVATNLAPEVAYRLIQVFNETGRELRQSNHADIYLEVATVKLT 357
>gi|385840750|ref|YP_005864074.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius CECT
5713]
gi|300214871|gb|ADJ79287.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius CECT
5713]
Length = 579
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 198/362 (54%), Gaps = 9/362 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +LVGQ +V R+L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFMDLVGQEMVTRTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ +PC C C + GR DV E+D+ N + + + P + +K++I
Sbjct: 65 RFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAESIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I ++ +++D AL IA + G +RDA LLDQ+ G +TL A + G V
Sbjct: 185 QRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDNNVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
+ + L + L LS DT+N + ++++ D +LI L N D+L + E S+
Sbjct: 245 TQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQQAPEMVSD 304
Query: 594 AR----KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTW---LTVALLQLSSSE 646
N F + + + ++ ++ + + L++ ++ +R S HQ+ + LTV L QLS++
Sbjct: 305 GELGLLDNKFKELSQQINVTQIYQIIDELNKQQENMRFSSHQSIYLEVLTVKLTQLSTNS 364
Query: 647 SS 648
S
Sbjct: 365 ES 366
>gi|418628108|ref|ZP_13190667.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU127]
gi|374838867|gb|EHS02401.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU127]
Length = 568
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L R + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|242372721|ref|ZP_04818295.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
gi|242349638|gb|EES41239.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
Length = 560
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 187/344 (54%), Gaps = 7/344 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NCL+ +D
Sbjct: 2 YRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDD 61
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E+D+ N D + ++ P S++K++IIDE
Sbjct: 62 GEPCNECEICRGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVH 121
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H +F++ T E K+P + +SR+Q++ F I I RL+
Sbjct: 122 MLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISMDQIVDRLKF 181
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIVSDDEL 539
+ +++++D+AAL+FIA S G +RDA ++DQ G +K+TL A + G V + L
Sbjct: 182 VADSQSLDYDEAALEFIAKASEGGMRDALSIMDQAIAFGEEKLTLQDALNVTGSVDEAAL 241
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
+L ++ D R + + +LI+ + + D + K + E F
Sbjct: 242 NELFKDVVNGDVKAAFGRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNETIE----FD 297
Query: 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E DM L R + I+++T +R S +Q V L++L+
Sbjct: 298 ALIDFELDM--LYRMIDIINDTLVSIRFSVNQNVHFEVLLVKLA 339
>gi|414085491|ref|YP_006994202.1| DNA polymerase III subunits gamma and tau [Carnobacterium
maltaromaticum LMA28]
gi|412999078|emb|CCO12887.1| DNA polymerase III, subunits gamma and tau [Carnobacterium
maltaromaticum LMA28]
Length = 628
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 197/354 (55%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++ GQ + ++L +A+ +G + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFQDIAGQQAITQTLRNALIQGKSSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LED +PC C C +SG+ DV E+D+ N + + + A P S+ +K++I
Sbjct: 65 QFLEDGEPCNECETCKAITSGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKNVIFILATTEPHKIPLTIISRTQRFDFKRISVKDIC 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
+R+ I +E I F+ AAL IA + G +RDA +LDQ+ G +T++ A + G +
Sbjct: 185 ARMVYILNQEKIGFEDAALPVIARVAEGGMRDALSILDQVISYGDDMVTVANAMSVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ + LL D + ++T + + ++ D + + L D+L A + L+
Sbjct: 245 TQELLLSYFDAIVMNNTEKGLSILQSILAEGKDAARFVEDLILFSRDLLVYQQAPEMLDL 304
Query: 591 CSEARK-NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
EA N F + + + + L + IL+ET+ ++R S H +L VA ++++
Sbjct: 305 LEEASADNGFKELSQKIPAKTLYSVITILNETQGEMRFSNHPDIYLEVATVKMT 358
>gi|392531426|ref|ZP_10278563.1| DNA polymerase III subunits gamma and tau [Carnobacterium
maltaromaticum ATCC 35586]
Length = 628
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 197/354 (55%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++ GQ + ++L +A+ +G + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFQDIAGQQAITQTLRNALIQGKSSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LED +PC C C +SG+ DV E+D+ N + + + A P S+ +K++I
Sbjct: 65 QFLEDGEPCNECETCKAITSGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKNVIFILATTEPHKIPLTIISRTQRFDFKRISVKDIC 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
+R+ I +E I F+ AAL IA + G +RDA +LDQ+ G +T++ A + G +
Sbjct: 185 ARMVYILNQEKIGFEDAALPVIARVAEGGMRDALSILDQVISYGDDMVTVANAMSVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ + LL D + ++T + + ++ D + + L D+L A + L+
Sbjct: 245 TQELLLSYFDAIVMNNTEKGLSILQSILAEGKDAARFVEDLILFSRDLLVYQQAPEMLDL 304
Query: 591 CSEARK-NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
EA N F + + + + L + IL+ET+ ++R S H +L VA ++++
Sbjct: 305 LEEASADNGFKELSQKIPAKTLYSVITILNETQGEMRFSNHPDIYLEVATVKMT 358
>gi|417912534|ref|ZP_12556225.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU105]
gi|418620823|ref|ZP_13183618.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU123]
gi|420188984|ref|ZP_14694983.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM039]
gi|341650575|gb|EGS74394.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU105]
gi|374831130|gb|EHR94878.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU123]
gi|394253796|gb|EJD98791.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM039]
Length = 568
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKGAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L + + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|164686926|ref|ZP_02210954.1| hypothetical protein CLOBAR_00526 [Clostridium bartlettii DSM
16795]
gi|164604029|gb|EDQ97494.1| DNA polymerase III, subunit gamma and tau [Clostridium bartlettii
DSM 16795]
Length = 551
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 193/355 (54%), Gaps = 7/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ +VR+L + I V YLF G RGTGKTS ++IF+ A+NC
Sbjct: 7 ALYRVYRPKNFSDVIGQEHIVRTLKNQIENNNVGHAYLFCGTRGTGKTSTAKIFSRAVNC 66
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L + +PC C C ++ DV E+D+ N D + L ++ P +++K++I
Sbjct: 67 TNLHNDEPCNECENCREILEDKTMDVVEIDAASNNSVDDIRELRENVKYSPAKAKYKVYI 126
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q++ F ++ DI+
Sbjct: 127 IDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKRVTVKDIS 186
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SR+R IC +E I D+ AL+ IA S G++RDA +LDQ +S G KI+ + EL+G V
Sbjct: 187 SRMRYICEKEGIEADEKALNLIARNSQGALRDALSILDQCISFEGNKISYNDVIELLGSV 246
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ ++L DL + + DT ++ + + D L++ L + +++ K D E
Sbjct: 247 NIEQLFDLAESIIKEDTRKSLQILNDFIIWGKDVRNLVNDLIDHFRNLMVCKISNDLDEI 306
Query: 595 RK------NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + D L R L ILSE + +++S + + V +++++
Sbjct: 307 ISLPEETIDLLKQQAETIDTNNLIRILNILSEAQDGMKISSNPRVLMEVTMMKIA 361
>gi|418412906|ref|ZP_12986156.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis BVS058A4]
gi|410883766|gb|EKS31601.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis BVS058A4]
Length = 568
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L + + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESIHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|416349856|ref|ZP_11680683.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum C
str. Stockholm]
gi|338196469|gb|EGO88661.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum C
str. Stockholm]
Length = 541
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 200/358 (55%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+E+VGQ + +L + + + YLF G RGTGKTS ++IF+ A+NC
Sbjct: 5 ALYREWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C ++G + DV E+D+ N+ D + L++ PP ++K++I
Sbjct: 65 LNPQDGEPCNECDMCKKINAGLAIDVSEMDAASHNKVDDIRDLIEEVKYPPREGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE + VVF++ T + KLP + LSR Q++ F +IK DI
Sbjct: 125 MDEAHMLTQGAVNAFLKTLEEPPEKVVFILATTDPQKLPITILSRCQRFDFKRIKSDDIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL +I E+ I D +L IA S+G++RDA +LDQ +S+ K+ ++G+V
Sbjct: 185 ERLIKITKEQGIFADNKSLSLIARMSDGAMRDALSILDQAISMGNGKVDYDQVINMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
++D LL L + + D N++ +++ + D I + + + +++ K +
Sbjct: 245 TNDNLLKLTNTIIDKDIENSIRIIDDVVYAGKDINLFIKDMIHHMRNLMMVKVSQNPEDV 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D SE NF + + + ++++ R ++IL E E+Q + SK +L ++++++ E
Sbjct: 305 LDMSEENINFLKEQSKKIRIEEIMRCIRILQECEEQSKWSKQGRIYLELSIIKMCKIE 362
>gi|288802676|ref|ZP_06408114.1| DNA polymerase III, gamma and tau subunit protein [Prevotella
melaninogenica D18]
gi|288334826|gb|EFC73263.1| DNA polymerase III, gamma and tau subunit protein [Prevotella
melaninogenica D18]
Length = 603
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 192/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F GRS ++ E+D+ N + + SLM +PP R+K+FII
Sbjct: 68 PTADGEACNECESCKAFGEGRSYNIFELDAASNNSVENIKSLMDQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ +I +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+R+ +E I FD+ AL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE-----D 590
+ +++DLAL + S ++ ++ D L++ LA+ + ++L K ++ +
Sbjct: 248 AENYFNIIDLALENKVSEIMVLLNSVINKGFDGGHLVNGLASHVRNVLMAKDVQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE +N + + + L AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 VSEQLRNRYQLQAQKCPVNFLYTALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|302345714|ref|YP_003814067.1| DNA polymerase III, subunit gamma and tau [Prevotella
melaninogenica ATCC 25845]
gi|302150079|gb|ADK96341.1| DNA polymerase III, subunit gamma and tau [Prevotella
melaninogenica ATCC 25845]
Length = 603
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 191/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F GRS ++ E+D+ N + + SLM +PP R+K+FII
Sbjct: 68 PTADGEACNECESCKAFGEGRSYNIFELDAASNNSVENIKSLMDQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ +I +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+R+ +E I FD+ AL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ +++DLAL + S ++ ++ D L++ LA+ + ++L K L +
Sbjct: 248 AENYFNIIDLALENKVSEIMVLLNSVINKGFDGGHLVNGLASHVRNVLMAKDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE +N + + + L AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 VSEQLRNRYQLQAQKCPVNFLYTALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|258509261|ref|YP_003172012.1| DNA polymerase III subunits gamma and tau [Lactobacillus rhamnosus
GG]
gi|385828898|ref|YP_005866670.1| DNA polymerase III subunits gamma and tau [Lactobacillus rhamnosus
GG]
gi|257149188|emb|CAR88161.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus
GG]
gi|259650543|dbj|BAI42705.1| DNA polymerase III subunits gamma and tau [Lactobacillus rhamnosus
GG]
Length = 565
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 190/356 (53%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ+ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P +C C + G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNICEICQAINDGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTRARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED-CSE 593
+ L L L+ D + + +L+ + D +LI L + D+L + E
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEYLRDLLVNQQAPALLGE 304
Query: 594 ARKNF----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+ F + ++ + +L+ T++QLRM+ H +L VA ++LS +
Sbjct: 305 LEKSLLDDQFKILSENFKPTQIYHMIDVLNTTQQQLRMTNHPEIYLEVATVRLSET 360
>gi|291333850|gb|ADD93532.1| DNA polymerase III subunits gamma and tau [uncultured marine
bacterium MedDCM-OCT-S04-C191]
Length = 625
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 201/383 (52%), Gaps = 8/383 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K RPN F++L+GQ + R+L +A++ G V +LF G RG GKTSA+RI ALNCL
Sbjct: 6 LARKLRPNRFEDLIGQKTISRTLRNAVTSGRVAHAFLFSGSRGVGKTSAARILTKALNCL 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ ED PCG CR C + S DV E+D+ + + L + P R+K++II
Sbjct: 66 APEDGNPCGKCRNCIEITENASPDVYEIDAASNRGIENIRELRDNVQYAPAQCRYKVYII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E++ +L +LE HV F++ T + KLP++ +SR Q+Y F ++ +A
Sbjct: 126 DEAHMLTLESFNALLKTLEEPPSHVKFILATTDPHKLPQTIISRCQRYDFVRVPLQQMAG 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L ++ V E ++ + AL+ I+ ++ G +RDA ++DQ LS G E++GIV
Sbjct: 186 FLEKVTVAEQLSISRRALEIISRQAVGGMRDALTMIDQVLSFTGDSAKDEEVLEILGIVD 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQL------ANLIMDILAGKCL- 588
D L+ + S +I + L D +L++QL +LI + L
Sbjct: 246 GDSRFAFLESLIGSRADEAMIHFQNLQDHGHDLHELLAQLLKEVKTLSLIQAVGPESVLF 305
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+D + + + K E +L + IL + E+Q++ S H T +ALLQ+ S +
Sbjct: 306 QDYTRDDVDSYRKLAGETTSSRLQQIFDILLDLEEQMKRSTHARTCFEMALLQIISLQPL 365
Query: 649 LDLNDSKLCLRYAHDKDGDSHCT 671
+ + + +R + GD++ +
Sbjct: 366 VGVPELLKEIRKLRKESGDTNSS 388
>gi|87123287|ref|ZP_01079138.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
gi|86169007|gb|EAQ70263.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
Length = 597
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 182/340 (53%), Gaps = 8/340 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ+V+ +L A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDQLVGQDVIAATLSHALRSDRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S +PCG C C S+G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 SSDTPTPEPCGTCELCTTISAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ LR I +EAI + AL +A ++ G +RDAE LLDQLSLL I +EL+G V
Sbjct: 188 EAHLRWIAEQEAIGIEPEALHVVAQRAQGGLRDAESLLDQLSLLPAPIKAEAVWELLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ EL+ L + + + + +R L+ DP ++ LA ++ D++ L
Sbjct: 248 PEQELIGLAEALANGEPLPLLEGSRRLLDRGRDPGAVLQGLAAILRDLVLMAAAPERPEL 307
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMS 628
S ++ Q+L + L +E+QLR+S
Sbjct: 308 TSVSPQLRDQLPPLAQRIGRQRLLQWQARLRGSEQQLRLS 347
>gi|253682734|ref|ZP_04863530.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str.
1873]
gi|253561056|gb|EES90509.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str.
1873]
Length = 541
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 200/358 (55%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+E+VGQ + +L + + + YLF G RGTGKTS ++IF+ A+NC
Sbjct: 5 ALYREWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C ++G + DV E+D+ N+ D + L++ PP ++K++I
Sbjct: 65 LNPQDGEPCNECDMCKKINAGLAIDVSEMDAASHNKVDDIRDLIEEVKYPPREGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE + VVF++ T + KLP + LSR Q++ F +IK DI
Sbjct: 125 MDEAHMLTQGAVNAFLKTLEEPPEKVVFILATTDPQKLPITILSRCQRFDFKRIKSDDIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL +I E+ I D +L IA S+G++RDA +LDQ +S+ K+ ++G+V
Sbjct: 185 ERLIKITKEQGIFADNKSLSLIARMSDGAMRDALSILDQAISMGNGKVDYDQVINMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
++D LL L + + D N++ +++ + D I + + + +++ K +
Sbjct: 245 TNDNLLKLTNTIIDKDIENSIRIIDDVVYAGKDINLFIKDMIHHMRNLMMVKVSQNPEDV 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D SE NF + + + ++++ R ++IL E E+Q + SK +L ++++++ E
Sbjct: 305 LDMSEENINFLKEQSKKIRIEEIMRCIRILQECEEQSKWSKQGRIYLELSIIKMCKIE 362
>gi|418325149|ref|ZP_12936357.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU071]
gi|420163750|ref|ZP_14670492.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM095]
gi|420168006|ref|ZP_14674657.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM087]
gi|420185132|ref|ZP_14691231.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM040]
gi|365228753|gb|EHM69931.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU071]
gi|394234039|gb|EJD79628.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM095]
gi|394237400|gb|EJD82890.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM087]
gi|394255514|gb|EJE00464.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM040]
Length = 568
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L + + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|416127711|ref|ZP_11597028.1| DNA polymerase III, subunits gamma and tau [Staphylococcus
epidermidis FRI909]
gi|418329654|ref|ZP_12940708.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis 14.1.R1.SE]
gi|319399737|gb|EFV87985.1| DNA polymerase III, subunits gamma and tau [Staphylococcus
epidermidis FRI909]
gi|365229902|gb|EHM71027.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 568
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L + + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|366087654|ref|ZP_09454139.1| DNA polymerase III subunits gamma and tau [Lactobacillus zeae KCTC
3804]
Length = 566
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 193/356 (54%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ+ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L+D +P C C + G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LNLKDGEPDNTCEICQAINDGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTRARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKKITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L L L+ D + + +L+ + D +LI L + D+L A L D
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMIEDLLAAGKDAGRLIEDLIEYLRDLLVNQQAPSLLGD 304
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
++ + K SE ++ + +L+ T++QLRM+ H +L VA ++LS +
Sbjct: 305 LEKSLLDDQFKILSENFKPAQIYHMIDVLNNTQQQLRMTNHPEIYLEVATVRLSET 360
>gi|317472133|ref|ZP_07931465.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
gi|316900537|gb|EFV22519.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
Length = 532
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 201/373 (53%), Gaps = 22/373 (5%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +KFRP+ FDE+ GQ+ +V +L + + G + YLF G RGTGKTS +++ A A+N
Sbjct: 4 MALYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAVN 63
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C ED PCG+C C G S +V E+D+ N D + + + P S ++K+F
Sbjct: 64 CEHPEDGNPCGVCESCREIQEGSSMNVMEIDAASNNGVDNIRDIKEQVQYSPASGKYKVF 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q+Y F +I I
Sbjct: 124 IIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRITADVI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIG 532
A RL + EE + ++ AL ++A ++GS+RDA LLDQ LGKK+T E++G
Sbjct: 184 ADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLLDQCIAFYLGKKLTYENVLEVLG 243
Query: 533 IVSDDELLDLLDLALSSDTS-------NTVIRARELMRSKIDPMQLISQLANLIMDILAG 585
V LLD L++D + V + REL + D I L NL +LAG
Sbjct: 244 TVDISVYARLLDSILANDVTEVIGIVGKVVEQGRELSQFITD---FIWYLRNL---LLAG 297
Query: 586 K------CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
K LE +E + + + ++ + + + R ++ILS+ Q+R S + VAL
Sbjct: 298 KGDASMEALEVSAE-QLSLMQEKAAQVEEETVIRYIRILSDLLNQIRFSTSKRVLAEVAL 356
Query: 640 LQLSSSESSLDLN 652
+++ + DL+
Sbjct: 357 IKMCRPQMETDLS 369
>gi|384916622|ref|ZP_10016777.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum
fumariolicum SolV]
gi|384525946|emb|CCG92650.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum
fumariolicum SolV]
Length = 592
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 133/394 (33%), Positives = 205/394 (52%), Gaps = 18/394 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
S+K+RP F E+VGQ+ VVR+L +AI V YLF GPRGTGKT+ +RI A +LNC
Sbjct: 5 FSRKYRPKVFSEVVGQDHVVRTLKNAIRLQRVAHAYLFSGPRGTGKTTLARILAKSLNCT 64
Query: 357 S-----LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
+ P C +GRS D E+D N D+V L ++A P SR+
Sbjct: 65 DGPNADFDPNDPI-----CLDIDAGRSFDCIEIDGASNNGVDQVRDLREAAKTLPVQSRY 119
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
KI+IIDE +L + +L LE QHV F+ T E K+P + +SR Q++HF +I
Sbjct: 120 KIYIIDEVHMLTQAAFNALLKILEEPPQHVKFIFATTEPHKIPTTVISRCQRFHFKRIPR 179
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYEL 530
IA L++IC E I+ D+ AL+ IA S G++RDAE+ LDQL S G++I L+ E+
Sbjct: 180 KLIADHLQKICSYEQIDADRKALEIIADISEGALRDAEVALDQLISFYGERIDLASVQEM 239
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC--- 587
GIV + L +L S + + + L+ S DP+ L + NL+ ++ K
Sbjct: 240 FGIVGLEPLCGILRDIASGQSLEALKKVHMLLESGKDPILLAREFRNLLHNVALFKASIT 299
Query: 588 -LEDCSEARK-NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L+ +A + + + + + + L+ + E +LR + H+ +A+L+LS
Sbjct: 300 TLKGQLDAEELDLIREASKHLSLPLVIDLLEAMDSWENKLRYALHKEVLFEIAILELSQL 359
Query: 646 ESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFK 679
+ ++L + L Y+ + S I P S K
Sbjct: 360 KEKVELEE--LLAMYSRSEGNLSEEKIFPLPSAK 391
>gi|420145703|ref|ZP_14653159.1| DNA-directed DNA polymerase III, gamma/tau subuni t [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
gi|398402655|gb|EJN55970.1| DNA-directed DNA polymerase III, gamma/tau subuni t [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
Length = 564
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 191/353 (54%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ + ++L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFADIVGQETITQTLRNALEAHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C ++G DV E+D+ N D + + A P S+ FK++I
Sbjct: 65 PNLKDGEPCNECPTCQAITAGTLNDVIEIDAASNNGVDEIRDIRDKAKYAPTSAPFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSHVVFILATTEPHKVPLTIISRTQRFDFQRISAQAIY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SR+ I E+ I F++ AL IA + G +RDA +LDQ LS +TL A ++ G
Sbjct: 185 SRMSYILQEKGITFEEPALKTIAKAAEGGMRDALSVLDQVLSFSDNHVTLDNALQVTGSA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L D + S DT + ++++ + D + I L D+L A +E
Sbjct: 245 AQQLLADYMQAVQSHDTPQALELLQQVLAAGKDAGRFIEDLIEYSRDLLLYQQAPAMVEK 304
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ K S+A +L R + +L+++++QLR + H +L VA ++L
Sbjct: 305 IELGSIDDQFKQLSQAFAADELYRVIDVLNDSQQQLRFTNHPDIYLEVASVKL 357
>gi|227891208|ref|ZP_04009013.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC
11741]
gi|227867082|gb|EEJ74503.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius ATCC
11741]
Length = 585
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 197/359 (54%), Gaps = 9/359 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +LVGQ +V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 11 ALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 70
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ +PC C C + GR DV E+D+ N + + + P + +K++I
Sbjct: 71 RFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKVYI 130
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I I
Sbjct: 131 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAESIL 190
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I ++ +++D AL IA + G +RDA LLDQ+ G +TL A + G V
Sbjct: 191 QRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDNNVTLDNALLVTGSV 250
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
+ + L + L LS DT+N + + ++++ D +LI L N D+L + E S+
Sbjct: 251 TQESLFNYLKFVLSKDTTNALKKIQQIVEQGKDANRLIEDLINYCRDLLLYQQAPEMVSD 310
Query: 594 ARKNF----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTW---LTVALLQLSSS 645
F + + + ++ +L + + L++ ++ +R S HQ+ + LTV L QLS++
Sbjct: 311 GELGLLDDKFKELSQQINVTQLYQIIDELNKQQENMRFSSHQSIYLEVLTVKLTQLSTN 369
>gi|254421557|ref|ZP_05035275.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
sp. PCC 7335]
gi|196189046|gb|EDX84010.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
sp. PCC 7335]
Length = 745
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 189/358 (52%), Gaps = 16/358 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + ++L A+ + + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 5 LHHKYRPQTFSQLVGQDAIAQTLTHALEQKRIAPAYLFCGPRGTGKTSSARILAKSLNCL 64
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S E +PCG C C G + DV E+D+ D + L++ + P R+K++
Sbjct: 65 SSEVPTAQPCGQCDVCQAVIQGIALDVVEIDAASNTGVDNIRELIERSQFAPVQCRYKLY 124
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DE +L + +L +LE VVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 125 VLDEVHMLSTAAFNALLKTLEEPPSRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLPSM 184
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I EEAI + +A+ +A S G +RDAE LLDQLSL KIT+ ++L+G V
Sbjct: 185 IKHLSYISAEEAIQIEPSAIQLVAQISQGGLRDAESLLDQLSLQANKITVETVWDLVGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +LL+L+ + D++ + R R LM +P+ ++ L D+L K +
Sbjct: 245 PERDLLNLVRAIAADDSTALLERVRHLMDKGREPLIVLQSLVGFYRDLLIAK----RAPK 300
Query: 595 RKNFFGKHTSE-ADM----QKLSRALKILSE-----TEKQLRMSKHQTTWLTVALLQL 642
R + + A+M QKLS A + S+ E Q++ + WL + L L
Sbjct: 301 RVDLVAITSPTWAEMIPFAQKLSAAALLASQQKLQSAEVQIKNTTQPRLWLEITLTGL 358
>gi|418577142|ref|ZP_13141268.1| DNA polymerase III gamma and tau subunit [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379324326|gb|EHY91478.1| DNA polymerase III gamma and tau subunit [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 578
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 189/351 (53%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 13 ALYRMFRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 72
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G + DV E+D+ N D + ++ P S+FK++I
Sbjct: 73 LERSDGEPCNECAICKGITRGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKFKVYI 132
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I +I
Sbjct: 133 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISQEEIV 192
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
RL+ + +AI +D+AAL+FIA S G +RDA ++DQ G + +TL A + G V
Sbjct: 193 ERLKFVAESQAIEYDEAALNFIAKASEGGMRDALSIMDQAIAFGDEHLTLEDALNVTGSV 252
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
L +L + D N + + + +LI+ + + D + K + +E
Sbjct: 253 DAKALNELFKEVVEGDVRNAFSTYHQFISQGKEVNRLINDMIYFVRDTIMNKTSNEETEY 312
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
A +F D++ L + + I+++T +R S +Q+ V L++++
Sbjct: 313 DALMHF--------DLEVLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKIA 355
>gi|417657463|ref|ZP_12307124.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU028]
gi|418665548|ref|ZP_13226992.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU081]
gi|329734326|gb|EGG70640.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU028]
gi|374408435|gb|EHQ79257.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU081]
Length = 568
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 190/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++ L A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLILQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L R + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|325279833|ref|YP_004252375.1| DNA polymerase III, subunits gamma and tau [Odoribacter
splanchnicus DSM 20712]
gi|324311642|gb|ADY32195.1| DNA polymerase III, subunits gamma and tau [Odoribacter
splanchnicus DSM 20712]
Length = 369
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 186/352 (52%), Gaps = 7/352 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ + +L +AI + YLF GPRG GKT+ +RIFA +NCL+
Sbjct: 8 ARKYRPASFDTVVGQLAITSTLRNAIVNHQLAQAYLFTGPRGVGKTTCARIFAKTINCLN 67
Query: 358 LE-DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L+ + +PC C C F++GRS ++ E+D+ N D + L++ + P ++ ++II
Sbjct: 68 LQPNAEPCNECESCKAFNAGRSLNIHELDAASNNSVDDIRGLVEQVRILPQVGKYSVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE H +F++ T E K+ + LSR Q Y F ++K GD
Sbjct: 128 DEVHMLSTSAFNAFLKTLEEPPAHAIFILATTEKHKILPTILSRCQIYDFNRMKVGDTVE 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ I +E I ++AALD IA K++G++RDA + DQ +S GK +T E + ++
Sbjct: 188 HLKYISAKEGITAEEAALDVIAQKADGAMRDALSIFDQVVSFCGKNLTYEKVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D L DL + + E++ D LI+ L D+L K L +
Sbjct: 248 YDYYFRLTDLFNAGKVGEAFLLFNEIIGKGFDGGNLIAGLGKHFRDVLVSKDPATVQLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
S K + K ++ + L ALKI+ + E Q ++ + + +AL++L
Sbjct: 308 VSAGIKARYAKQAADCQVDFLYEALKIVEQCEMQYKVRMEKRLCIELALIKL 359
>gi|408409587|ref|ZP_11180879.1| DNA polymerase III, gamma/tau subunit [Lactobacillus sp. 66c]
gi|407876256|emb|CCK82685.1| DNA polymerase III, gamma/tau subunit [Lactobacillus sp. 66c]
Length = 648
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 190/351 (54%), Gaps = 8/351 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L ++I RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDAVVGQEAITDTLKNSIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L+D +PC C C G D+ E+D+ N D + L+ P ++K++I
Sbjct: 65 LNLQDGEPCNECANCLAADQGAMPDITEMDAASNNSVDEIRELLDKVHYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE V+F++ T EL K+P + +SR+Q+Y+F +I + D+
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVIFILATTELQKVPATIISRTQRYNFKRISNADLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E + ++ AL IA ++G +RDA +LDQ LS K+ A E+ G
Sbjct: 185 KRMEYILGQEGVAYEDRALSVIAQVADGGMRDALSILDQLLSFEKDKLLYDDALEITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +++ LL L+ D + + A++ + + +++++ +L + ++ L +
Sbjct: 245 AREDIEQLLLALLNRDAAKALDLAKKAIANGASSQNILNEIISLAVQVM---LLAKSGQG 301
Query: 595 RKNF----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
+ F F S+ +L+ ++ ++ LR + Q L V L++
Sbjct: 302 QDAFVSEGFADAVSQVPASRLTGIVEAANQALGDLRFTNQQQIPLEVFLVK 352
>gi|228474144|ref|ZP_04058881.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119]
gi|228271839|gb|EEK13176.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119]
Length = 569
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 191/351 (54%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNPHDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISTEQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR + E+++++++AAL+FIA S G +RDA ++DQ G + +TL ++ G V
Sbjct: 185 ERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDVLDVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-- 592
+ L +L + ++ + R + + +LI+ + + D + K + + +
Sbjct: 245 DEASLNELFNDIVNGNVKEAFSRYHHFVSEGKEVNRLINDMIYFVRDTIMNKTINEQTSY 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A F D++ L + I+++T +R S +Q V L++L+
Sbjct: 305 DALTQF--------DLETLYYMIDIINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|421768665|ref|ZP_16205376.1| DNA polymerase III subunits gamma and tau [Lactobacillus rhamnosus
LRHMDP2]
gi|421773699|ref|ZP_16210337.1| DNA polymerase III subunits gamma and tau [Lactobacillus rhamnosus
LRHMDP3]
gi|411181465|gb|EKS48638.1| DNA polymerase III subunits gamma and tau [Lactobacillus rhamnosus
LRHMDP3]
gi|411186338|gb|EKS53463.1| DNA polymerase III subunits gamma and tau [Lactobacillus rhamnosus
LRHMDP2]
Length = 565
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 189/356 (53%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ+ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C + G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINDGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTRARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED-CSE 593
+ L L L+ D + + +L+ + D +LI L + D+L + E
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEYLRDLLVNQQAPALLGE 304
Query: 594 ARKNF----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+ F + ++ + +L+ T++QLRM+ H +L VA ++LS +
Sbjct: 305 LEKSLLDDQFKILSENFKPAQIYHMIDVLNTTQQQLRMTNHPEIYLEVATVRLSET 360
>gi|418618851|ref|ZP_13181703.1| DNA polymerase III, subunit gamma and tau [Staphylococcus hominis
VCU122]
gi|374826420|gb|EHR90317.1| DNA polymerase III, subunit gamma and tau [Staphylococcus hominis
VCU122]
Length = 569
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 191/351 (54%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNPHDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISTEQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR + E+++++++AAL+FIA S G +RDA ++DQ G + +TL ++ G V
Sbjct: 185 ERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDVLDVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-- 592
+ L +L + ++ + R + + +LI+ + + D + K + + +
Sbjct: 245 DEASLNELFNDIVNGNVKEAFSRYHHFVSEGKEVNRLINDMIYFVRDTIMNKTINEQTSY 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A F D++ L + I+++T +R S +Q V L++L+
Sbjct: 305 DALTQF--------DLETLYYMIDIINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|229552944|ref|ZP_04441669.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
gi|258540445|ref|YP_003174944.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus
Lc 705]
gi|385836083|ref|YP_005873858.1| DNA polymerase III, subunit gamma and tau [Lactobacillus rhamnosus
ATCC 8530]
gi|229313688|gb|EEN79661.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
gi|257152121|emb|CAR91093.1| DNA polymerase III gamma and tau subunits [Lactobacillus rhamnosus
Lc 705]
gi|355395575|gb|AER65005.1| DNA polymerase III, subunit gamma and tau [Lactobacillus rhamnosus
ATCC 8530]
Length = 565
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 189/356 (53%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ+ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C + G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINDGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTRARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED-CSE 593
+ L L L+ D + + +L+ + D +LI L + D+L + E
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEYLRDLLVNQQAPALLGE 304
Query: 594 ARKNF----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+ F + ++ + +L+ T++QLRM+ H +L VA ++LS +
Sbjct: 305 LEKSLLDDQFKILSENFKPAQIYHMIDVLNTTQQQLRMTNHPEIYLEVATVRLSET 360
>gi|314935127|ref|ZP_07842480.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis
subsp. hominis C80]
gi|313656462|gb|EFS20201.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis
subsp. hominis C80]
Length = 569
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 191/351 (54%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNPHDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISTEQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR + E+++++++AAL+FIA S G +RDA ++DQ G + +TL ++ G V
Sbjct: 185 ERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDVLDVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-- 592
+ L +L + ++ + R + + +LI+ + + D + K + + +
Sbjct: 245 DEASLNELFNDIVNGNVKEAFSRYHHFVSEGKEVNRLINDMIYFVRDTIMNKTINEQTSY 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A F D++ L + I+++T +R S +Q V L++L+
Sbjct: 305 DALTQF--------DLETLYYMIDIINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|199599027|ref|ZP_03212434.1| DNA polymerase III, gamma/tau subunit [Lactobacillus rhamnosus
HN001]
gi|418072719|ref|ZP_12709989.1| DNA polymerase III subunits gamma and tau [Lactobacillus rhamnosus
R0011]
gi|423077336|ref|ZP_17066039.1| DNA polymerase III, subunit gamma and tau [Lactobacillus rhamnosus
ATCC 21052]
gi|199590063|gb|EDY98162.1| DNA polymerase III, gamma/tau subunit [Lactobacillus rhamnosus
HN001]
gi|357537116|gb|EHJ21143.1| DNA polymerase III subunits gamma and tau [Lactobacillus rhamnosus
R0011]
gi|357554634|gb|EHJ36349.1| DNA polymerase III, subunit gamma and tau [Lactobacillus rhamnosus
ATCC 21052]
Length = 565
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 189/356 (53%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ+ + ++L +A+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRVWRPQQFKDVIGQDAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L LED +P C C + G DV E+D+ N D + + A P +R K++I
Sbjct: 65 LHLEDGEPDNTCEICQAINDGSLTDVIEIDAASNNGVDEIRDIRDKAKYAPTRARVKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ I +D AAL IA + G +RDA +LDQ LS +T A ++ G V
Sbjct: 185 KRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVTGGV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED-CSE 593
+ L L L+ D + + +L+ + D +LI L + D+L + E
Sbjct: 245 TTAVLGKYLAAVLAKDHAQALKMVEDLLAAGKDAGRLIEDLIEYLRDLLVNQQAPALLGE 304
Query: 594 ARKNF----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+ F + ++ + +L+ T++QLRM+ H +L VA ++LS +
Sbjct: 305 LEKSLLDDQFKILSENFKPAQIYHMIDVLNTTQQQLRMTNHPEIYLEVATVRLSET 360
>gi|73663587|ref|YP_302368.1| DNA polymerase III gamma and tau subunits [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|72496102|dbj|BAE19423.1| DNA polymerase III gamma and tau subunits [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 570
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 189/351 (53%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G + DV E+D+ N D + ++ P S+FK++I
Sbjct: 65 LERSDGEPCNECAICKGITRGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I +I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISQEEIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
RL+ + +AI +D+AAL+FIA S G +RDA ++DQ G + +TL A + G V
Sbjct: 185 ERLKFVAESQAIEYDEAALNFIAKASEGGMRDALSIMDQAIAFGDEHLTLEDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
L +L + D N + + + +LI+ + + D + K + +E
Sbjct: 245 DAKALNELFKEVVEGDVRNAFSTYHQFISQGKEVNRLINDMIYFVRDTIMNKTSNEETEY 304
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
A +F D++ L + + I+++T +R S +Q+ V L++++
Sbjct: 305 DALMHF--------DLEVLYKMIGIINDTLVSIRFSVNQSVHFEVLLVKIA 347
>gi|409351315|ref|ZP_11234081.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
equicursoris CIP 110162]
gi|407876823|emb|CCK86139.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
equicursoris CIP 110162]
Length = 652
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 195/358 (54%), Gaps = 9/358 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L ++I RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDAVVGQEAITDTLKNSIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L+D +PC C C G D+ E+D+ N D + L+ P ++K++I
Sbjct: 65 LNLQDGEPCNECANCLAADQGAMPDITEMDAASNNSVDEIRELLDKVHYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE V+F++ T EL K+P + +SR+Q+Y+F +I + D+
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVIFILATTELQKVPATIISRTQRYNFKRISNADLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E + ++ AL IA ++G +RDA +LDQ LS K+ A E+ G
Sbjct: 185 KRMEYILGQEGVAYEDRALYVIAQVADGGMRDALSILDQLLSFEKDKLLYDDALEITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +++ LL L+ D + + A++ + + +++++ +L + I+ L +
Sbjct: 245 AREDIEQLLLALLNRDAAKALDLAKKAIANGASSQNILNEIISLAVQIM---LLAKSGQG 301
Query: 595 RKNF----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ F F S+ +L+ ++ ++ LR + Q L V L++ ++ ES+
Sbjct: 302 QDAFVSEGFADAVSQVPASRLTGIVEAANQALGDLRFTNQQQIPLEVFLVK-AAQEST 358
>gi|417646348|ref|ZP_12296208.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU144]
gi|329727982|gb|EGG64429.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU144]
Length = 568
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV ++D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNNDVIDIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L + + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|255527108|ref|ZP_05393996.1| DNA polymerase III, subunits gamma and tau [Clostridium
carboxidivorans P7]
gi|296187897|ref|ZP_06856290.1| DNA polymerase III, subunit gamma and tau [Clostridium
carboxidivorans P7]
gi|255509210|gb|EET85562.1| DNA polymerase III, subunits gamma and tau [Clostridium
carboxidivorans P7]
gi|296047518|gb|EFG86959.1| DNA polymerase III, subunit gamma and tau [Clostridium
carboxidivorans P7]
Length = 541
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 199/358 (55%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FD++VGQ + +L + I + YLF G RGTGKTS ++I A A+NC
Sbjct: 5 ALYREWRPRIFDDVVGQKHITVTLKNQIRNNRIAHAYLFSGTRGTGKTSTAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C +SG S DV E+D+ R + + ++++ PP ++K++I
Sbjct: 65 TDLRDGEPCNECDMCKKINSGISIDVIEMDAASKRRLEDIKDVIENVKYPPQEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR QK+ F +IK DI
Sbjct: 125 MDEVHMLTAEAVNAFLKTLEEPPSNVIFILATTDPQKLPVTILSRCQKFDFRRIKSSDIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I E+ I D +L+ IA S+G++RDA +LDQ +S+ G K+ ++G+V
Sbjct: 185 GRMRDIVKEQGIFADDRSLNLIARMSDGAMRDALSILDQAISMGGGKVEYESVVSMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ----LISQLANLIMDILAGKCLE- 589
+++ ++ L D + + ++ +++ S D +I+ L NL+M ++ + E
Sbjct: 245 TNENMIKLADSIIDKNVEESMKVIDDIVLSGKDIYNFIRDMITHLRNLLMVKVSKEPEEI 304
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D SE + + + +++ R ++IL + E+Q + +K +L +A++++ E
Sbjct: 305 LDMSEENIELLKEQSKKTKSEEIMRNIRILQDAEEQSKWTKQSRIYLELAVIKMCKIE 362
>gi|78211617|ref|YP_380396.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9605]
gi|78196076|gb|ABB33841.1| DNA-directed DNA polymerase [Synechococcus sp. CC9605]
Length = 614
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 183/342 (53%), Gaps = 8/342 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ + +L A++ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ E +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 NSEGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLDAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L I +EAI A+ +A +S G +RDAE LLDQLSLL I + ++L+G V
Sbjct: 188 NTHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEAAAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED---C 591
+ ELL+L+ S++ + R L+ DP ++ LA ++ D++ D
Sbjct: 248 PEQELLELVGAMSSAEPVQLLEATRNLLDRGRDPGAVLQGLAGMLRDLVLMAAAPDRLEL 307
Query: 592 SEARKNFFGKHTSEADMQKLSRALKI---LSETEKQLRMSKH 630
+ F + + A +R L+ L TE+QLR S
Sbjct: 308 TSVSPQFREQLPALAKAIGRARLLQWQAQLRGTEQQLRQSMQ 349
>gi|406981790|gb|EKE03187.1| hypothetical protein ACD_20C00234G0009 [uncultured bacterium]
Length = 653
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 203/362 (56%), Gaps = 12/362 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L +K+RP F ++VGQ +VR+L +A+ V YL GPRGTGKTS +RIFA +LNC
Sbjct: 8 LYRKYRPQKFKDIVGQESIVRTLSNALELNKVAHAYLLTGPRGTGKTSTARIFAKSLNCQ 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG C C + + DV E+D+ + + +L++ P + ++KI+II
Sbjct: 68 NGPTLDPCGECPSCLDIARSNAIDVIEIDAASNRKVEDARNLLEKVQFVPVAGKYKIYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + T+L +LE ++VF++ T E K+ + +SR Q++ F +I+ I
Sbjct: 128 DEVHMLTTEAFNTLLKTLEEPPPNLVFILATTEAHKVLNTIISRCQRFDFRRIRQDLIVE 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG---KKITLSLAYELIGI 533
RL+ I E IN + AL IA +S G +RDA LLDQ+S+L K++T L+G
Sbjct: 188 RLKEIIKIENININDKALSLIARRSAGGLRDALSLLDQVSILASIQKEVTEKDILTLLGC 247
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ +D L L D + +TSN + E+++ +P+Q++ +L N ++L K ++ E
Sbjct: 248 LQEDTLYGLADAMANRNTSNLIAILDEVIQLGSEPIQILRELMNYFRNLLLVKTTDNIDE 307
Query: 594 ------ARKNFFG---KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ F+G K + + ++ ++++ + LS EK LR++ Q WL VAL+ +++
Sbjct: 308 IITMIDVSEQFYGEIKKQSEQFEVLEITQIIDKLSNYEKTLRVTSQQHLWLEVALISIAN 367
Query: 645 SE 646
+
Sbjct: 368 RQ 369
>gi|259048077|ref|ZP_05738478.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens
ATCC 49175]
gi|259035138|gb|EEW36393.1| DNA polymerase III, gamma and tau subunits [Granulicatella adiacens
ATCC 49175]
Length = 572
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 194/354 (54%), Gaps = 2/354 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++VGQ+ V +L +AIS + YLF GPRGTGKTSA+++FA A+NC
Sbjct: 5 ALYRKWRPQTFDDMVGQSAVTHTLKNAISNQKTSHAYLFTGPRGTGKTSAAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ ++ +PC C C ++G DV E+D+ N + + + A P + +KI+I
Sbjct: 65 PNQKNGEPCNECEICKGITNGTIGDVIEIDAASNNGVEEIRDIRDKARYAPTQAEYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q V+F++ T E K+P + +SR+Q++ F +I +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQKVIFILATTEPHKIPATIISRTQRFDFRRITSQEII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL I +E I ++ AL +A +NG +RDA LLDQ+ G K+T A ++ G +
Sbjct: 185 DRLAYILDQEGIPYEADALSVVARCANGGMRDALSLLDQMISFGDGKVTFEEAIQVSGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+DD ++D + + + ++L + + +L+ + D+L K +
Sbjct: 245 TDDLMIDFVADLQAQKAEEALESLQQLFKMGKEASRLVEEWLEFARDLLVAKQSGEAV-G 303
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
R F + E D L R ++ L++T++++R + T L V ++++ ++S
Sbjct: 304 RSERFLQFKDEVDAAFLYRFVEALNQTQQEMRFTTKPTISLEVLTIKMAQPQTS 357
>gi|90962203|ref|YP_536119.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius
UCC118]
gi|90821397|gb|ABE00036.1| DNA polymerase III subunit gamma/tau [Lactobacillus salivarius
UCC118]
Length = 579
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 196/359 (54%), Gaps = 9/359 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +LVGQ +V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ +PC C C + GR DV E+D+ N + + + P + +K++I
Sbjct: 65 RFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAESIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I ++ +++D AL IA + G +RDA LLDQ+ G +TL A + G V
Sbjct: 185 QRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDNNVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
+ + L + L LS DT+N + ++++ D +LI L N D+L + E S+
Sbjct: 245 TQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQQAPEMVSD 304
Query: 594 ARKNF----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTW---LTVALLQLSSS 645
F + + + ++ +L + + L++ ++ +R S HQ+ + LTV L QLS++
Sbjct: 305 GELGLLDDKFKELSQQINVTQLYQIIDELNKQQENMRFSSHQSIYLEVLTVKLTQLSTN 363
>gi|333394621|ref|ZP_08476440.1| DNA polymerase III subunits gamma and tau [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
gi|336391921|ref|ZP_08573320.1| DNA polymerase III subunits gamma and tau [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
Length = 566
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 191/353 (54%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ + ++L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 7 ALYRVWRPQRFADIVGQETITQTLRNALEAHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 66
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C ++G DV E+D+ N D + + A P S+ FK++I
Sbjct: 67 PNLKDGEPCNECPTCQAITAGTLNDVIEIDAASNNGVDEIRDIRDKAKYAPTSAPFKVYI 126
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + +SR+Q++ F +I I
Sbjct: 127 IDEVHMLSTGAFNALLKTLEEPPSHVVFILATTEPHKVPLTIISRTQRFDFQRISAQAIY 186
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I E+ I F++ AL IA + G +RDA +LDQ LS +TL A ++ G
Sbjct: 187 NRMSYILQEKGITFEEPALKTIAKAAEGGMRDALSVLDQVLSFSDNHVTLDNALQVTGSA 246
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L D + S DT + ++++ + D + I L D+L A +E
Sbjct: 247 AQQLLADYMQAVQSHDTPQALELLQQVLAAGKDAGRFIEDLIEYSRDLLLYQQAPAMVEK 306
Query: 591 CSEARKNFFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ K S+A +L R + +L+++++QLR + H +L VA ++L
Sbjct: 307 IELGSIDDQFKQLSQAFAADELYRVIDVLNDSQQQLRFTNHPDIYLEVASVKL 359
>gi|242243365|ref|ZP_04797810.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
gi|418614443|ref|ZP_13177411.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU118]
gi|418631222|ref|ZP_13193691.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU128]
gi|418634817|ref|ZP_13197208.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU129]
gi|420176573|ref|ZP_14682993.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM061]
gi|420190539|ref|ZP_14696480.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM037]
gi|420192562|ref|ZP_14698421.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM023]
gi|420205841|ref|ZP_14711364.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM015]
gi|420235837|ref|ZP_14740371.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH051475]
gi|242233314|gb|EES35626.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
gi|374820151|gb|EHR84253.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU118]
gi|374835608|gb|EHR99207.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU128]
gi|374836359|gb|EHR99946.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU129]
gi|394241117|gb|EJD86538.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM061]
gi|394258472|gb|EJE03352.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM037]
gi|394261292|gb|EJE06092.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM023]
gi|394269526|gb|EJE14060.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM015]
gi|394302149|gb|EJE45598.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH051475]
Length = 568
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ ++ +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDNGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L + + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|260435304|ref|ZP_05789274.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109]
gi|260413178|gb|EEX06474.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109]
Length = 626
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 182/340 (53%), Gaps = 8/340 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ + +L A++ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ E +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 NSEGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLNAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +EAI A+ +A +S G +RDAE LLDQLSLL I + ++L+G V
Sbjct: 188 NKHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEAAAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED---C 591
+ ELL+L+ S++ + R L+ DP ++ LA ++ D++ D
Sbjct: 248 PEQELLELVGAMSSAEPVQLLKATRNLLDRGRDPGAVLQGLAGMLRDLVLMAAAPDRLEL 307
Query: 592 SEARKNFFGKHTSEADMQKLSRALKI---LSETEKQLRMS 628
+ F + + A +R L+ L TE+QLR S
Sbjct: 308 TSVSPQFREQLPALAKAIGRARLLQWQAQLRGTEQQLRQS 347
>gi|417788579|ref|ZP_12436262.1| DNA polymerase III subunits gamma and tau [Lactobacillus salivarius
NIAS840]
gi|334308756|gb|EGL99742.1| DNA polymerase III subunits gamma and tau [Lactobacillus salivarius
NIAS840]
Length = 579
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 192/359 (53%), Gaps = 9/359 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +LVGQ +V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ +PC C C + GR DV E+D+ N + + + P + +K++I
Sbjct: 65 RFSKEGEPCNECETCKAITEGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAESIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I ++ +++D AL IA + G +RDA LLDQ+ G +TL A + G V
Sbjct: 185 QRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDNNVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
+ + L + L LS DT+N + ++++ D +LI L N D+L + E S+
Sbjct: 245 TQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQQAPEMVSD 304
Query: 594 ARKNFFGKHTSEADMQ-KLSRALKILSETEKQ---LRMSKHQTTW---LTVALLQLSSS 645
E Q +++ +I+ E KQ +R S HQ+ + LTV L QLS++
Sbjct: 305 GELGLLDDKFKELSQQINVTQIYQIIDELNKQQENMRFSSHQSIYLEVLTVKLTQLSTN 363
>gi|420178411|ref|ZP_14684743.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM057]
gi|420179140|ref|ZP_14685440.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM053]
gi|394246601|gb|EJD91857.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM057]
gi|394254528|gb|EJD99496.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM053]
Length = 568
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ ++ +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDNGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L + + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|326390316|ref|ZP_08211875.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus JW 200]
gi|325993593|gb|EGD52026.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus JW 200]
Length = 518
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/361 (32%), Positives = 194/361 (53%), Gaps = 5/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E+VGQ +VR+L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C ++ + DV E+D+ N + V L +S P +++K++I
Sbjct: 64 LNNKDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYSPSIAKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E DKLP + LSR Q++ F KI IA
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKKIPTRLIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L +IC++ I ++ L IA NGS+RDA LL+Q S IT E++G+
Sbjct: 184 QNLEKICIDSNIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLGVA 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ L LLD + D + ++ + +++ ID + L ++ D++ G+ L++
Sbjct: 244 NDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEELKE 303
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+ + L+ AL+ + +K++R + T L V +L+L E S D
Sbjct: 304 ILYSDVETVKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPEISYD 363
Query: 651 L 651
+
Sbjct: 364 M 364
>gi|436670132|ref|YP_007317871.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
gi|428262404|gb|AFZ28353.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
Length = 499
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/357 (35%), Positives = 188/357 (52%), Gaps = 13/357 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L QK+RP ELVGQ + +L +A+ + YLF G RGTGKTS +RIFA +LNC
Sbjct: 5 ALHQKYRPQTLAELVGQPYIKTALTNAVKNLQIAPAYLFTGSRGTGKTSTARIFAKSLNC 64
Query: 356 LSLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
L+ + KPCG+C+ C + S DV E+D+ N D +L++ L P + R++I
Sbjct: 65 LNTKKPTDKPCGICQSCRSIETSNSLDVSEIDAASNNGVDDARALIERCTLVPVAGRYRI 124
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
FI+DE L ++ +L +E HVVF++ T EL K+ + +SR Q ++F +
Sbjct: 125 FILDESHQLTTQSQNALLKCIEEPPPHVVFILCTTELHKVLPTIVSRCQVFNFRTLSVKT 184
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I LR + E+I+ + AL IA S+G +RDA LL Q SLL IT E++G
Sbjct: 185 IVQHLRIVADAESISINDEALIAIARLSDGGLRDALQLLGQASLLNADITAHHVMEIVGG 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------- 586
V++ EL+ +L +++T N + AR L+ S P ++S L D+L K
Sbjct: 245 VTETELMAILQAITTNNTFNLLQVARVLVDSGKTPKLILSNLLQTYRDLLVIKSVPKEQA 304
Query: 587 CLEDC-SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
L C S + F H + + L+ +L L + E LR + + WL V LL L
Sbjct: 305 LLTGCVSHTQLKAFANH---WNFETLNLSLAELQKAENYLRYTVNAAVWLEVCLLNL 358
>gi|392940072|ref|ZP_10305716.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma/tau
[Thermoanaerobacter siderophilus SR4]
gi|392291822|gb|EIW00266.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma/tau
[Thermoanaerobacter siderophilus SR4]
Length = 542
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 199/373 (53%), Gaps = 8/373 (2%)
Query: 284 NNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKT 343
NNE+ + SL +K+RP F E+VGQ +VR+L + I + YLF G RGTGKT
Sbjct: 19 NNEVLNMYQ---SLYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKT 75
Query: 344 SASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF 403
S ++IFA A+NCL+ +D +PC C C ++ + DV E+D+ N + V L +S
Sbjct: 76 SVAKIFAKAVNCLNNKDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVI 135
Query: 404 LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQK 463
P +++K++IIDE +L + +L +LE HV+F++ T E DKLP + LSR Q+
Sbjct: 136 YSPSLAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQR 195
Query: 464 YHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKI 522
+ F KI IA L +IC++ I ++ L IA NGS+RDA LL+Q S I
Sbjct: 196 FDFKKIPTRLIAQNLEKICIDSNIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEGLI 255
Query: 523 TLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI 582
T E++G+ +D+ L LLD + D + ++ + +++ ID + L ++ D+
Sbjct: 256 TYEDVCEMLGVANDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDM 315
Query: 583 L----AGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVA 638
+ G+ L++ + + L+ AL+ + +K++R + T L V
Sbjct: 316 VLYKTGGEELKEILYSDVETVKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVT 375
Query: 639 LLQLSSSESSLDL 651
+L+L E S D+
Sbjct: 376 ILRLIKPEISYDM 388
>gi|299144510|ref|ZP_07037589.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517598|gb|EFI41338.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 548
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/361 (31%), Positives = 198/361 (54%), Gaps = 5/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDELVGQN + +L + I+ ++ YLF G RGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSKTFDELVGQNHITTALKNQIANNEISHAYLFSGTRGTGKTSAAKIFARAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L E+ PC C C R DV E+D+ N D + L + PP + ++K++I
Sbjct: 64 LCSENGNPCNHCENCLSILDDRVMDVIEMDAASNNSVDDIRELKEKVVYPPQNLKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L LE +H++F++ T E +K+P++ LSR+Q+++F +I I
Sbjct: 124 IDEVHMLSKSAFNALLKVLEEPPKHLIFILATTEPEKIPQTILSRTQRFNFKRINPEIII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L+ I E + D+ I+ S+G++RDA LLDQ LS K I+ +LA E++GI
Sbjct: 184 ENLKNITALENKSCDEDVFSLISNNSDGAMRDALSLLDQCLSFTDKHISYNLATEILGIT 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
SDD L + + + N + +E+ D LIS L + +++ K +++ SE
Sbjct: 244 SDDILFKISRALIDRNLENAISSLQEIYSKGKDISILISDLISHFRNLMIVKTIKNTSEL 303
Query: 594 ---ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
R + + K + ++ LKIL+ET ++ + + +++++++ + ++
Sbjct: 304 LYTTRLDDYIKEACMLSVDRIIDILKILNETLLNVKYANDKRIIFEMSIIKITMLKDTVS 363
Query: 651 L 651
L
Sbjct: 364 L 364
>gi|365924292|ref|ZP_09447055.1| DNA polymerase III subunits gamma and tau [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 570
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 192/358 (53%), Gaps = 14/358 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +LVGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQKFVDLVGQKMITQTLQNAIMTQQTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + GR DV E+D+ N D + + P + +K++I
Sbjct: 65 HNQKDGEPCNECATCRAITEGRLNDVIEIDAASNNSVDEIRDIRDKVKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I + DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSNVVFILATTEPHKIPATIISRTQRFDFKRITNDDII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I E+ +++ AL +A S G +RDA +LDQ LS +TL A + G V
Sbjct: 185 ARMQYILAEKNFKYEEKALRVVAKASAGGMRDALSILDQVLSFGNDVVTLENALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIM-----DILAG 585
++L L L +T+ + +E+M D +L+ + NL++ I+
Sbjct: 245 KHEQLNLYLKLVFEGETAQALQALQEIMSEGKDANRLVEDVIDYCRNLLLYQASPSIVEQ 304
Query: 586 KCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
L D + K K T +Q L A+ IL+E ++ +R S H +L V ++LS
Sbjct: 305 NSLLDIDDDFKGLASKTT----VQSLYEAIDILNEQQQNMRFSTHSDIYLEVLTVKLS 358
>gi|168003463|ref|XP_001754432.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694534|gb|EDQ80882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 220
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 148/222 (66%), Gaps = 4/222 (1%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
E + +QK+RP F+E+VGQNVVV+SL +A+++ Y+F GPRGTGKTSA+R+FAA
Sbjct: 2 ELTRTFNQKYRPKNFNEIVGQNVVVKSLSTAVAKRKAAPVYMFMGPRGTGKTSAARVFAA 61
Query: 352 ALNCLSLE-DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSR 410
LNCLS + ++PCG+CREC + RS DV+++D+ + +LM S F P ++
Sbjct: 62 GLNCLSPDYARRPCGICRECGTIALNRSADVRQIDAASNMDMASMRALMGS-FTP--HAQ 118
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
+KIFI++ C LL + W L LE ++VVF++IT +++P +A+SR QK+ F K+K
Sbjct: 119 YKIFIVEGCDLLSSDIWNAFLKLLEEPPRNVVFILITTHAERIPPTAISRCQKFQFFKLK 178
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLL 512
+ DI RL+ + +E + + AL IA +S+GS+RDAE+ L
Sbjct: 179 EPDIVKRLQFLAAKEDLRVEADALALIATRSDGSLRDAEIFL 220
>gi|269926492|ref|YP_003323115.1| DNA polymerase III subunits gamma and tau [Thermobaculum terrenum
ATCC BAA-798]
gi|269790152|gb|ACZ42293.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum
ATCC BAA-798]
Length = 550
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 178/318 (55%), Gaps = 13/318 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+R FDELVGQ V ++L++AI G + YLF GPRGTGKTS +R+ A A+NC
Sbjct: 4 SLYRKYRSQTFDELVGQEHVKKTLINAIKSGKIAHAYLFCGPRGTGKTSTARLLAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LS E KPC C C + GR+ D+ E+D+ + + V +++ P R+K++I
Sbjct: 64 LS-EGTKPCNSCSACLSINEGRAVDLIEIDAASRRKVEDVADIIERVNFAPAELRYKVYI 122
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +FV+ T E+ K+ + +SR Q++ F +I +I
Sbjct: 123 IDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRCQRFDFRRITPREIV 182
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL I E I + AL IA S GS+RDA +LDQL++ G ++ITL +L+GIV
Sbjct: 183 ERLAFIAENENIKIQKDALIAIAKASTGSLRDAISILDQLTVYGDEEITLEHVKQLLGIV 242
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+D + + + + +DT + +L +DP Q +L + + D++ K
Sbjct: 243 GEDVVANFVGAIIDNDTQAALSLLTQLSEHGVDPRQFTQELVSYLRDLMLLKA------- 295
Query: 595 RKNFFGKHTSEADMQKLS 612
+ ++ S+A ++++S
Sbjct: 296 ----YNQNASKAGIERVS 309
>gi|347534183|ref|YP_004840853.1| DNA polymerase III subunit gamma/tau [Lactobacillus
sanfranciscensis TMW 1.1304]
gi|345504239|gb|AEN98921.1| DNA polymerase III subunit gamma/tau [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 575
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 197/360 (54%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ V+ ++L +A+ ++ YLF+GPRGTGKTS ++I A A+NC
Sbjct: 5 ALYRVWRPQRFDEIVGQQVITQTLKNALVTDQISHAYLFNGPRGTGKTSTAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C ++G DV E+D+ N + + ++ A P +++K++I
Sbjct: 65 EHLKDGEPCNECDICVAINNGSLNDVIEIDAASNNGVEEIRNIRDKAKYAPTEAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I+ DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVIFILATTEPHKIPATIISRVQRFDFKRIQAKDIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
++ +I + I +D AL IA + G +RDA +LDQ LS +IT A ++ G V
Sbjct: 185 EQMEKILDSKKIKYDDRALKVIAKSAEGGMRDALSILDQVLSYSDDEITYDSALQVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ D+L + ++ D + + ++ + D Q I L N +IL K + EA
Sbjct: 245 ARDDLQAYMQAIINGDVRVGLKEVQAILNNGKDASQFIEDLINYCQNILLYKQDSEMVEA 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F + + K+ ++ +++ ++QLR + H +L + ++L++ + +
Sbjct: 305 SELGLLGDDFKEIAEKVKSSKVYYYVETMNDVQRQLRSTYHPDVYLDILTVKLANQPAEI 364
>gi|345883785|ref|ZP_08835214.1| hypothetical protein HMPREF0666_01390 [Prevotella sp. C561]
gi|345043444|gb|EGW47513.1| hypothetical protein HMPREF0666_01390 [Prevotella sp. C561]
Length = 603
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 191/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPLSFDAVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C FS GRS ++ E+D+ N + + +LM +PP R+K+FII
Sbjct: 68 PTADGEACNECESCKAFSEGRSYNIFELDAASNNSVENIKALMDQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ +I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIID 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+R+ +E I +++ AL IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKRVAEKENIQYEEEALSVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ +++DLAL + S ++ ++ D L++ LA+ + ++L K L +
Sbjct: 248 TENYFNIVDLALENKVSEIMVLLNTVINKGFDGGHLVNGLASHVRNVLMAKDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE +N + + + + L AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 VSEQLRNRYQQQAQKCPVNFLYTALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|227513703|ref|ZP_03943752.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC
11577]
gi|227522507|ref|ZP_03952556.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC
8290]
gi|227083022|gb|EEI18334.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC
11577]
gi|227090329|gb|EEI25641.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC
8290]
Length = 630
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 203/383 (53%), Gaps = 14/383 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ+++ ++L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 47 ALYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAVNC 106
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LED +PC C C + G DV E+D+ N + + + P + +K++I
Sbjct: 107 HYLEDGEPCNKCETCRAINEGSLSDVIEIDAASNNGVEEIRDIRDKVKYAPTKADYKVYI 166
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+QK+ F +I+ DI
Sbjct: 167 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIRPEDIL 226
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ I +D AL IA + G +RDA +LDQ +S K+T A ++ G V
Sbjct: 227 ERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDKVTYENALQVTGSV 286
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+++ L ++ + DT N +I ++++ + D + + L + DIL + E
Sbjct: 287 TNELLTTYVEQVIKKDTKNALITVQKVLDNGKDASRFVEDLTSYCQDILLYQQDPQIVEQ 346
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS------ 643
+ + F + + +++ + + L+E LR + H +L V ++++
Sbjct: 347 LELGMVDDKFKALSDQISDEEIYQIINELNEIANSLRYTAHPDVYLQVLTVKITHLKQLE 406
Query: 644 --SSESSLDLNDSKLCLRYAHDK 664
S+ +S+D D ++ DK
Sbjct: 407 DVSTTTSVDNADENGKIKMLTDK 429
>gi|227510687|ref|ZP_03940736.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227189808|gb|EEI69875.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 630
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 192/354 (54%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ+++ ++L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 47 ALYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAVNC 106
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LED +PC C C + G DV E+D+ N + + + P + +K++I
Sbjct: 107 HYLEDGEPCNKCETCRAINEGSLSDVIEIDAASNNGVEEIRDIRDKVKYAPTKADYKVYI 166
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+QK+ F +I+ DI
Sbjct: 167 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIRPEDIL 226
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ I +D AL IA + G +RDA +LDQ +S K+T A ++ G V
Sbjct: 227 ERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDKVTYENALQVTGSV 286
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+++ L ++ + DT N +I ++++ + D + + L + DIL + E
Sbjct: 287 TNELLTTYVEQVIKKDTKNALITVQKVLDNGKDASRFVEDLTSYCQDILLYQQDPQIVEQ 346
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F + + +++ + + L+E LR + H +L V ++++
Sbjct: 347 LELGMVDDKFKALSDQISDEEIYQIINELNEIANSLRYTAHPDVYLQVLTVKIT 400
>gi|373463828|ref|ZP_09555410.1| DNA polymerase III, subunit gamma and tau [Lactobacillus kisonensis
F0435]
gi|371763842|gb|EHO52295.1| DNA polymerase III, subunit gamma and tau [Lactobacillus kisonensis
F0435]
Length = 589
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 191/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ+++ R+L +A+ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDEIVGQSIITRTLKNALITKQISHAYLFTGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 HYLKDGEPCNQCETCKAINEGSLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+QK+ F +IK DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPHKIPATIISRTQKFDFKRIKPKDIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ +++D AL IA + G +RDA +LDQ +S +IT A + G V
Sbjct: 185 ERMAYILKQKDVSYDDRALKLIAKAAEGGMRDALSILDQAMSYGDNQITYENALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+++ L ++ DT + ++ ++++ D + I L + DIL + E
Sbjct: 245 TNELLTTYMEQVHQKDTKSALMTVQKILDGGKDASRFIEDLTSYCQDILLYQQDPQMVEQ 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F K + E Q + + + L+E LR + H +L V ++++
Sbjct: 305 MELGIIDDQFKKLSGEISDQDIYQMINELNEISNSLRFTAHPDVYLEVLTVKIT 358
>gi|189219682|ref|YP_001940323.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum
V4]
gi|189186540|gb|ACD83725.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum
V4]
Length = 618
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 189/369 (51%), Gaps = 38/369 (10%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
S+K+RP F E+VGQ VVR+L +AI G V YLF GPRGTGKT+ +RI A +LNC
Sbjct: 19 FSRKYRPRVFSEVVGQEHVVRTLKNAIRLGRVAHAYLFSGPRGTGKTTLARILAKSLNCA 78
Query: 357 S-----LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
+ P C +GRS D E+D N D+V L ++A P SR+
Sbjct: 79 DGPNADFDPDDPI-----CLDIDAGRSLDCIEIDGASNNGVDQVRELREAAKSLPVQSRY 133
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
KI+IIDE +L + +L LE HV F+ T E K+P + SR Q++HF +I
Sbjct: 134 KIYIIDEVHMLTQAAFNALLKILEEPPAHVKFIFATTEPYKIPPTVSSRCQRFHFKRIPR 193
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYEL 530
IA L++IC++E I+ ++ AL+ IA S G++RDAE+ LDQL S G+KI S E+
Sbjct: 194 RLIADHLQKICIQEKIDAERKALEMIADISEGALRDAEVALDQLISFYGEKIDQSSVQEM 253
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI-LAGKCLE 589
G+V + L LL D + A +L+ S DP+ L+ NL+ DI L +E
Sbjct: 254 FGLVGIEPLCRLLTDLAQGDGRGALKEAHQLLESGKDPLSLLRSFRNLLHDIALYMASVE 313
Query: 590 DCSEARKNFFGKHTSEADMQKLSRA---------------LKILSETEKQLRMSKHQTTW 634
E D ++L + L+ + + E +LR + H+
Sbjct: 314 SLG-----------LELDPEELDQVRSMSSRLSLSFVINLLEAIDQWENKLRYALHKEVL 362
Query: 635 LTVALLQLS 643
+A+L+LS
Sbjct: 363 FEIAILELS 371
>gi|403670154|ref|ZP_10935319.1| DNA polymerase III subunit gamma/tau [Kurthia sp. JC8E]
Length = 588
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 188/351 (53%), Gaps = 11/351 (3%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F E+ GQ+ V R+L +A++ T YLF GPRGTGKTS +RIFA ALNC
Sbjct: 10 YRPQTFREVSGQSHVKRTLQNALAANKTTHAYLFSGPRGTGKTSMARIFAKALNCEHAPT 69
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS-SRFKIFIIDEC 419
+PC C C + G+S DV E D+ +R + + +++ L P + +R+KI+IIDE
Sbjct: 70 TEPCNECAHCKEINEGKSNDVFEYDAASNSRVEDMREMLEYIDLAPSNGTRYKIYIIDEV 129
Query: 420 QLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLR 479
+L + +L +LE HVVF++ T E K+P + +SR+Q++ F ++ D+ R++
Sbjct: 130 HMLSTSAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFKRLSSNDLVERMK 189
Query: 480 RICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDE 538
+ + + +D+ A+ IA + G +RDA +LDQ +S ++ L A + G +S D
Sbjct: 190 VVLEDINMTYDERAVKVIAQSAAGGMRDALSMLDQVVSFSDSEVGLEDALFVTGSISQDV 249
Query: 539 LLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL-------AGKCLEDC 591
+L L D +N + +LM D ++L L D+L G LE
Sbjct: 250 FYNLAQSLLQKDVANVLAMLEQLMAEGKDAVRLSEDLITFFRDLLLLQTAPDLGDLLELA 309
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
S K F + + M L + ILS+T++++R+S H +L ALL++
Sbjct: 310 STDEK--FSELAEQFSMDTLYSYIDILSKTQQEMRLSLHSKVYLETALLKM 358
>gi|113955220|ref|YP_729300.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
CC9311]
gi|113882571|gb|ABI47529.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
CC9311]
Length = 643
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 169/300 (56%), Gaps = 4/300 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ + +L A++ G + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + +PCG C C + G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 SHDGPTPQPCGTCELCNTIARGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
S L I +E+I AL +A ++ G +RDAE LLDQLSLL I ++L+G V
Sbjct: 188 NSHLAWIAEQESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKADAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ ELL+L + AL+ T++ A R L+ DP ++ LA ++ D++ D E
Sbjct: 248 PEQELLNLAE-ALAEGEPLTLLEASRRLLDRGRDPGAVLQGLAGILRDLVLMAVAPDRPE 306
>gi|223043407|ref|ZP_03613453.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14]
gi|417905868|ref|ZP_12549665.1| DNA polymerase III, subunit gamma and tau [Staphylococcus capitis
VCU116]
gi|222443196|gb|EEE49295.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14]
gi|341598538|gb|EGS41042.1| DNA polymerase III, subunit gamma and tau [Staphylococcus capitis
VCU116]
Length = 568
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 188/351 (53%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIISRAQRFDFKAISMNQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++ +D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+ L DL + + R + + +LI+ + + D + K + E
Sbjct: 245 DEAALNDLFKDVVEGNVKEAFGRYHHFISEGKEVNRLINDMIYFVRDTIMIKTSNESIEY 304
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
A +F ++ L R + I+++T +R S +Q V L++L+
Sbjct: 305 DALVSF--------ELDTLYRMIDIINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|406839016|ref|ZP_11098610.1| DNA polymerase III subunits gamma and tau [Lactobacillus vini DSM
20605]
Length = 567
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 187/349 (53%), Gaps = 2/349 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +LVGQ ++ ++L +AI+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQQFTDLVGQQLITQTLKNAIAAKQTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ +PC C C + GR DV E+D+ N D + + + P + +KI+I
Sbjct: 65 HFQKNGEPCNQCEICRAITEGRLNDVIEIDAASNNSVDEIRDIREKVKYAPTQADYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D +
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPYKIPATIISRTQRFDFHRINDQTLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E + FD AAL+ IA + G +RDA +LDQ LS + TL A + G V
Sbjct: 185 KRMEYILKQEKVTFDPAALEVIAKAAAGGMRDALSMLDQVLSFGNHQATLKDALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-CLEDCSE 593
+ ++L L S + + ++L+ DP QL L + +L + +D
Sbjct: 245 AQEQLAAYLRAVFSQQAAPAFQQIQQLLADGKDPNQLFEGLIDYCRQLLLQQTVFKDQKG 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + +AL ILS+ ++ +R + HQ +L VA ++L
Sbjct: 305 ESNQVLISLAKKIPTKVIYQALDILSQEQQAMRFATHQEVYLDVATVKL 353
>gi|401679099|ref|ZP_10811032.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. ACP1]
gi|400219681|gb|EJO50543.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. ACP1]
Length = 808
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 179/354 (50%), Gaps = 6/354 (1%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+N
Sbjct: 4 MALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAIN 63
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C PC C C SG+S DV E+D+ D + +L +S P R K+F
Sbjct: 64 CEHGPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVF 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DI
Sbjct: 124 IIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGI 533
A RL+ + +E + A IA ++G +RDA +LDQ + + +IT ++ ELIG+
Sbjct: 184 AQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPAIVEELIGL 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
VS D ++ L D + + + D Q++ L + +L K D E
Sbjct: 244 VSKDWIIKFLSALHDGDGPAVLKYIQNALSEGRDGAQIMEALTQHLRALLIAKVAPDAEE 303
Query: 594 AR-----KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + F + + D +++ +K L + + T + + LL L
Sbjct: 304 LKVYDSFRTEFLEQAQDIDFGTINQYIKQLQSIMSDAKQVDNPRTVIEMGLLVL 357
>gi|424824455|ref|ZP_18249468.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes str.
Scott A]
gi|332313135|gb|EGJ26230.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes str.
Scott A]
Length = 556
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 184/341 (53%), Gaps = 6/341 (1%)
Query: 315 VVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374
+ ++L +AI + + YLF GPRGTGKTSA++IFA A+NC D +PC C C +
Sbjct: 1 MTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTT 60
Query: 375 SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSL 434
G DV E+D+ N + + + + P +++K++IIDE +L + +L +L
Sbjct: 61 DGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTL 120
Query: 435 ENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAAL 494
E +HV+F++ T E KLP + +SR Q++ F +I DI RL+ I EE I +D+ AL
Sbjct: 121 EEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKAL 180
Query: 495 DFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIVSDDELLDLLDLALSSDTSN 553
+A + G +RDA LLDQ+ G +++T+ A E+ G V+ + L L+ A D +
Sbjct: 181 MIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAE 240
Query: 554 TVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK-----NFFGKHTSEADM 608
+ L+ DP++L+ L D+L + + E + + F AD
Sbjct: 241 AISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETLERALIDDDFVALAKRADS 300
Query: 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
K+ +KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 301 LKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQASQSV 341
>gi|33864597|ref|NP_896156.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102]
gi|33632120|emb|CAE06576.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102]
Length = 593
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 186/341 (54%), Gaps = 11/341 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ + +L A++ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 NSDGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLDAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L I +EAI A+ +A +S G +RDAE LLDQLSLL I + ++L+G V
Sbjct: 188 EAHLSWIAEQEAIEIQPEAIHVVALRSQGGLRDAESLLDQLSLLPPPIEATAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ ELL L+ A+SS ++ A R L+ DP ++ LA ++ D++ D
Sbjct: 248 PEQELLQLVQ-AMSSAEPVALLEATRNLLDRGRDPGAVLQGLAGILRDLVLMAAAPD--- 303
Query: 594 ARKNFFGKHTSEAD-MQKLSRAL--KILSETEKQLRMSKHQ 631
R G D + L++AL L + + QLR S+ Q
Sbjct: 304 -RPELTGVSPQFRDQLPPLAKALGRARLLQWQAQLRGSEQQ 343
>gi|373456663|ref|ZP_09548430.1| DNA polymerase III, subunits gamma and tau [Caldithrix abyssi DSM
13497]
gi|371718327|gb|EHO40098.1| DNA polymerase III, subunits gamma and tau [Caldithrix abyssi DSM
13497]
Length = 522
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 187/356 (52%), Gaps = 12/356 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
+++++RP F+E++GQ V ++L +AI+ G + Y+F GPRG GKT+ +RI A A+NC
Sbjct: 6 IARRYRPQTFEEVIGQEHVSKTLANAIANGRIAHAYIFSGPRGVGKTTTARILAKAVNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PC C C + G + DV E+D D + +L + P +++++II
Sbjct: 66 KGPTPTPCNACPSCQAITKGNALDVYEIDGASNRGIDEIRNLREKIRFAPSMGKYRVYII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + +L +LE +HV+F+ T E+ ++P + LSR Q++ F ++ I
Sbjct: 126 DEVHMLTKEAFNALLKTLEEPPEHVIFIFATTEIHRVPPTILSRCQRFDFRRMPIKTIME 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
LR+IC E I ++ AL IA K++GS+RD++ +LDQL S G +I + +G++
Sbjct: 186 HLRKICDSENIKVEEEALLQIAKKADGSMRDSQSILDQLISFSGNEIKFEDVAKALGVIH 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC-----LED 590
DE L D +SD N ++ A ++ ++ D + + L +IL K L D
Sbjct: 246 QDEFFHLTDYIRNSDIKNIILTANKIFQTGYDLNEFLLGLEEHFRNILVLKATNSPDLLD 305
Query: 591 CSEA---RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE R K SE D L LK + ET ++ S+ + L++L+
Sbjct: 306 TSEVYLERYRELAKEISEND---LIGYLKTIGETINAVKASQQPQLKFELGLVKLA 358
>gi|319891430|ref|YP_004148305.1| DNA polymerase III subunits gamma and tau [Staphylococcus
pseudintermedius HKU10-03]
gi|386320229|ref|YP_006016392.1| DNA polymerase III subunits gamma and tau [Staphylococcus
pseudintermedius ED99]
gi|317161126|gb|ADV04669.1| DNA polymerase III subunits gamma and tau [Staphylococcus
pseudintermedius HKU10-03]
gi|323465400|gb|ADX77553.1| DNA polymerase III, subunits gamma and tau [Staphylococcus
pseudintermedius ED99]
Length = 567
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 189/351 (53%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ V ++L +AI++G + Y+F GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRMFRPQSFEDVVGQEHVTKTLKNAIAKGKQSHAYIFSGPRGTGKTSIAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 EVRDDGEPCNECASCKGITQGYNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAINANRIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR + ++ I FD+AAL FIA S G +RDA ++DQ G +++TL A ++ G +
Sbjct: 185 DRLRYVAHQQQIEFDEAALTFIAKVSEGGMRDALSIMDQAIAFGDERLTLKDALDVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC--LEDCS 592
+ +L L + R + + + +LI+ + + D + K LE
Sbjct: 245 DESDLNALFQDVVQGHVHEAFERYHQFVSEGKEVNRLINDMIYFVRDTIMAKTTQLETEY 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A F +++ L + + ++++T +R S +Q L V L++LS
Sbjct: 305 DALMPF--------NLEVLYKMIDVINDTLVSIRFSVNQNVHLEVLLVKLS 347
>gi|282881347|ref|ZP_06290026.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
CRIS 5C-B1]
gi|281304753|gb|EFA96834.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
CRIS 5C-B1]
Length = 610
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 191/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ ++ +L +A+ G + YLF GPRG GKT+ +RIFA A+NCL
Sbjct: 25 ARKYRPTSFDTVVGQTALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLH 84
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N + + SLM +PP ++K+FII
Sbjct: 85 PTADGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKSLMDQTRIPPQVGKYKVFII 144
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ DI +
Sbjct: 145 DEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTTNDIIN 204
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+++ +E I ++ AL+ IA K++G +RDA + DQ S IT + E + ++
Sbjct: 205 HLKKVAEKEGITYEDEALNIIAEKADGGMRDALSVFDQAASFCQGNITYAKVTEDLNVLD 264
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D +++DL L + S+ ++ ++ I+ LA+ I ++L K L +
Sbjct: 265 TDNYFNIVDLCLQNKVSDAMLLLNSIIAKGFAGGHFINGLASHIRNVLMAKDAQTLPLLE 324
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + L +ALK+L++ + R S ++ + + L+Q++
Sbjct: 325 VSQQQRQKYEEQAKKCPTTFLYQALKLLNQCDINYRQSSNKRLLVEITLIQIA 377
>gi|326802965|ref|YP_004320783.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651277|gb|AEA01460.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae
ACS-120-V-Col10a]
Length = 641
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 198/368 (53%), Gaps = 6/368 (1%)
Query: 282 LINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTG 341
++ NE + +L +K+RP F ++VGQ V R+L +AI++ + YLF+GPRGTG
Sbjct: 1 MVENEGREAMMSYQALYRKWRPQIFADIVGQEAVSRTLKNAINQDKTSHAYLFNGPRGTG 60
Query: 342 KTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS 401
KTSA++IFA A+NC + D +PC C C + GR DV E+D+ N + + +
Sbjct: 61 KTSAAKIFAKAINCPNQNDGEPCNECHLCQAITEGRLADVIEIDAASNNGVEEIRDIRDK 120
Query: 402 AFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRS 461
P + +K++IIDE +L + +L +LE V+F++ T E K+P + +SR+
Sbjct: 121 VRYAPTEANYKVYIIDEVHMLSTGAFNALLKTLEEPPSRVIFILATTEAHKIPATVISRT 180
Query: 462 QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK 520
Q++ F ++ + I R+ I +E + ++ AL+ IA +NG +RDA LLDQ +S
Sbjct: 181 QRFDFKRLSNQAIKDRMAYILGQEGVTYEAEALELIAQDANGGMRDALSLLDQVISFSQG 240
Query: 521 KITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIM 580
+IT ++ ++ GI+SD++ + ++ DT + R+++++ + + + ++
Sbjct: 241 EITTAMTRQVTGILSDEQKIAYVEALGQGDTDQALAVLRQILQAGREASRFVEEMLLFTR 300
Query: 581 DILAGKCLEDC--SEARKNF---FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWL 635
D+L K + ++ KN+ F D + + +K ++ +R + +L
Sbjct: 301 DLLLAKQSQGAKDTDLMKNYDQSFYDLAKNLDRDLIYQMMKEFRSVQEDIRFAIQGDIYL 360
Query: 636 TVALLQLS 643
VA ++L+
Sbjct: 361 EVATIKLA 368
>gi|389819536|ref|ZP_10209387.1| DNA polymerase III subunit gamma/tau [Planococcus antarcticus DSM
14505]
gi|388463256|gb|EIM05621.1| DNA polymerase III subunit gamma/tau [Planococcus antarcticus DSM
14505]
Length = 577
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 187/356 (52%), Gaps = 14/356 (3%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F ++ GQ V ++L +A+ T YLF GPRGTGKTSA++IFA ALNC
Sbjct: 10 YRPQSFSDMTGQIHVKQTLQNALLYNKTTHAYLFSGPRGTGKTSAAKIFAKALNCEQAPA 69
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E D+ +R + + +++ P +SRFKI+IIDE
Sbjct: 70 AEPCNECASCRSINEGSNTDVIEFDAASNSRVEEMREIIEKVRFSPANSRFKIYIIDEVH 129
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE +HVVF++ T E KLP + +SR Q++ F DI SR+
Sbjct: 130 MLSNSAFNALLKTLEEPPEHVVFILATTEPHKLPLTIISRCQRFDFKSHTQVDIVSRMVE 189
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDEL 539
+ + I +++ L IA + G +RDA LLDQ +S G ++T+ A + G +S D
Sbjct: 190 VLTDAKIPYNEQVLKIIAQAAAGGMRDALSLLDQVVSFSGDEMTVEDALLVTGSISQDMF 249
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
+ + L+ D + +L+R DP++L+ D+L + D +
Sbjct: 250 YGIAEALLAKDIGQALTLLEKLVRDGKDPVRLVEDFITFFRDLLLIQTAPDL----HDML 305
Query: 600 GKHTSEADMQKLSRALK---------ILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
T E ++L++ + +LS+T++++R S H ++ ALL+++ ++
Sbjct: 306 ELATHEPRFEELAKRFEPATLYTWIDVLSKTQQEMRFSNHTKIYMETALLKMAQAD 361
>gi|218441342|ref|YP_002379671.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7424]
gi|218174070|gb|ACK72803.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7424]
Length = 730
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 193/349 (55%), Gaps = 8/349 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + ++L++AI+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFMDLVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + P CG C C + + D+ E+D+ D + +++ A P R+K++
Sbjct: 66 SSDKPTPIPCGTCEVCKAIARSSALDIIEIDAASNTGVDNIREIIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE HVVFV+ T + ++ + +SR Q++ + +I D+
Sbjct: 126 VIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQRFDYRRIPLEDM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L+ I +E+I+ D A+ +A +NG +RDAE LLDQLSLL IT + +EL+G +
Sbjct: 186 VKHLKLIANKESIDIDDEAITLVAQIANGGLRDAESLLDQLSLLSGTITPARVWELVGAI 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE---DC 591
+ +LL LL S D ++ + R LM +P+ ++ LA ++++ K D
Sbjct: 246 PELDLLKLLKAIASKDPTHILDSCRHLMNRGKEPLTILQNLAGFYLNLVIAKTAPTRSDL 305
Query: 592 SEARKNFFGKHTSEA---DMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
+ + + EA +++++ + + L E+E QL+ + WL V
Sbjct: 306 VAVTASTWTQLCQEAQQWNLEEILQGQQHLKESEAQLKHTTQPRLWLEV 354
>gi|323487365|ref|ZP_08092664.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum
WAL-14163]
gi|323694200|ref|ZP_08108376.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
gi|355629216|ref|ZP_09050274.1| hypothetical protein HMPREF1020_04353 [Clostridium sp. 7_3_54FAA]
gi|323399326|gb|EGA91725.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum
WAL-14163]
gi|323501673|gb|EGB17559.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
gi|354819234|gb|EHF03682.1| hypothetical protein HMPREF1020_04353 [Clostridium sp. 7_3_54FAA]
Length = 536
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 191/365 (52%), Gaps = 10/365 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FDE+ GQ+ +V++L + I+ G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPVSFDEVKGQDHIVKTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S D PCG C C +S S +V E+D+ N + + + PP R++++I
Sbjct: 65 ESPVDGSPCGECSMCRQIASSASLNVVEIDAASNNGVENIRDIRDQVQYPPTEGRYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I I+
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRITIDTIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
+RL + E I+ ++ AL ++A ++GS+RDA LLDQ + G+K+T E++G
Sbjct: 185 ARLHELTQAEQIDVEERALRYVAKAADGSMRDALSLLDQCTAFHFGEKLTYDNVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC-- 591
V + L + DT + E++ D Q+++ + ++L K +D
Sbjct: 245 VDNSVFSSLFRAVTAGDTKGCIYTIEEMIIQGRDLTQMVNDFVWYMRNLLVVKTTDDAED 304
Query: 592 ----SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--SS 645
S + D L R ++I SE QLR + + +A ++L+ S
Sbjct: 305 MLDMSSENIAILKEEAELTDSDTLMRFIRIFSELSGQLRYASQKRVLAEIAFIKLTKPSM 364
Query: 646 ESSLD 650
E +LD
Sbjct: 365 EQNLD 369
>gi|254431925|ref|ZP_05045628.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
gi|197626378|gb|EDY38937.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
Length = 645
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 3/294 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ + ++ +A+ G + YLF GPRGTGKTS++RI A +LNC
Sbjct: 8 LHHKYRPQRFDQLVGQEAIAATMANALRSGRIAPAYLFSGPRGTGKTSSARILARSLNCT 67
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ P CG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 AAAGPTPDPCGRCELCTTIAAGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLESL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
LR I EEAI AL +A ++ G +RDAE LLDQLSLL + + ++L+G V
Sbjct: 188 EGHLRWIAAEEAIAITPEALHVVAQRAQGGLRDAESLLDQLSLLPPPVEVDAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKC 587
+ ELL L ++ + R L+ +P ++ L +L+ D +LAG
Sbjct: 248 PEQELLQLAGALAGAEPIALIEATRHLLERGREPAAVLQGLTSLLRDLVLAGTA 301
>gi|420200178|ref|ZP_14705840.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM031]
gi|394270227|gb|EJE14748.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM031]
Length = 568
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 191/349 (54%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ ++ +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDNGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++++D AAL+FIA S G +RD+ ++DQ G +++TL A + G V
Sbjct: 185 DRLKYVANSQSLDYDDAALEFIAKASEGGMRDSLSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L +L + + SD R + + +LI+ + + D + K +
Sbjct: 245 DEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKT------S 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ + D+ L + + I+++T +R S +Q+ V L++L+
Sbjct: 299 NESVHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|51891151|ref|YP_073842.1| DNA polymerase III subunits gamma and tau [Symbiobacterium
thermophilum IAM 14863]
gi|51854840|dbj|BAD38998.1| DNA polymerase III gamma and tau subunits [Symbiobacterium
thermophilum IAM 14863]
Length = 570
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 190/357 (53%), Gaps = 9/357 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ + R+L +AI +G + YL GPRGTGKT+ +RI A A+NC
Sbjct: 5 ALYREYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C +SG + D+ E+D+ D + L P ++K++I
Sbjct: 65 LNPQDGEPCNECEACRRITSGEALDLIEIDAASNRGIDEIRDLRDKVNFAPVELKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+FV+ T E KLP + LSR Q + + ++ +I
Sbjct: 125 IDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFDYRRLSADEIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK--KITLSLAYELIGI 533
+RLR +C ++ + AL IA ++G +RDA LLDQ+ +ITL + ++G
Sbjct: 185 ARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYAAEGEITLDMTLAVLGT 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL------AGKC 587
D+ L L L D ++ E++R+ D QL+ + D+L +
Sbjct: 245 APLDQFLALDGHLLRGDVGAALLWLDEMVRAGKDLRQLVRDYLAHLRDLLLVKLEAGAQV 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
L +EA + + A+ Q L RA+++L + E +LR+S + VAL++L+
Sbjct: 305 LGLPAEALEQMRARAEPFAERQ-LIRAIRLLGQAETELRLSPSPRLLVEVALIRLTG 360
>gi|314935108|ref|ZP_07842467.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae
C87]
gi|313653038|gb|EFS16801.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae
C87]
Length = 568
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 188/351 (53%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSDDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIISRAQRFDFKAISMDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++ +D AAL+FIA S G +RDA ++DQ G +++TL A + G V
Sbjct: 185 DRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+ L DL + + R + + +LI+ + + D + K + E
Sbjct: 245 DEAALNDLFKDVVEGNVKEAFGRYHHFISEGKEVNRLINDMIYFVRDTIMIKTSNESIEY 304
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
A +F ++ L R + I+++T +R S +Q V L++L+
Sbjct: 305 DALVSF--------ELDTLYRMIDIINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|193213861|ref|YP_001995060.1| DNA polymerase III subunits gamma and tau [Chloroherpeton
thalassium ATCC 35110]
gi|193087338|gb|ACF12613.1| DNA polymerase III, subunits gamma and tau [Chloroherpeton
thalassium ATCC 35110]
Length = 403
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 198/374 (52%), Gaps = 26/374 (6%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
+++K+RP F ++ Q V R+L +AI G + Y+F G RG GKT+A+RI A LNC
Sbjct: 6 IARKYRPQKFSDITAQEHVTRTLRNAIRTGRIAHGYIFSGSRGVGKTTAARILAKGLNCE 65
Query: 357 S-LEDQ-------KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS 408
L+D+ +PCG C C F +G S ++ E D+ N D + +L ++ P
Sbjct: 66 KILKDEAYRETVSEPCGECESCRDFDAGSSLNISEFDAASNNSVDDIRALRENVRYAPQK 125
Query: 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468
R+K++IIDE +L + L +LE H VF+ T EL+K+P + SR QK++F +
Sbjct: 126 GRYKVYIIDEFHMLSNAAFNAFLKTLEEPPSHAVFIFATTELNKVPPTIASRCQKFNFKR 185
Query: 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-----LSLLGKKIT 523
I DI RL IC EAIN D +L IA K++G++RDA+ LLDQ LS +KI
Sbjct: 186 ISVLDIQERLAEICAAEAINIDVDSLTLIARKADGAMRDAQSLLDQVISFFLSTENEKIE 245
Query: 524 LSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN------ 577
+ L+G + D+ + D + + + +R + + D + +++L
Sbjct: 246 YTNVAALLGDIDDEHFFAVTDSIKEKNHAKVLELSRYIFDNGFDTLDFLARLVEHFRNFL 305
Query: 578 LIMDILAGKCLEDCSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTW 634
L+ ++ + K +E A+K ++ +EAD ++L R + ++++ EK +R +
Sbjct: 306 LVKNLRSSKLIERTEAAKK----RYEAEADTFSAEELMRFIDVVNQAEKDIRFFREPQLR 361
Query: 635 LTVALLQLSSSESS 648
+ALL+L ++ S
Sbjct: 362 FELALLKLLHADVS 375
>gi|352096779|ref|ZP_08957535.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. WH
8016]
gi|351676001|gb|EHA59159.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. WH
8016]
Length = 652
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 184/345 (53%), Gaps = 18/345 (5%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ + +L A++ G + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + +PCG C C + G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 SHDGPTPQPCGTCELCTTIARGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E+I AL +A ++ G +RDAE LLDQLSLL I ++L+G V
Sbjct: 188 HQHLAWIAEQESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKADAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ ELL+L + AL+ T++ A R L+ DP ++ LA ++ D++ D
Sbjct: 248 PEQELLNLTE-ALAEGEPLTLLEASRRLLDRGRDPGAVLQGLAGILRDLVLMAVAPD--- 303
Query: 594 ARKNFFG-----KHTSEADMQKLSRALKI-----LSETEKQLRMS 628
R G + A Q+L R + L +E+QLR S
Sbjct: 304 -RPELTGVSPQFREQLPALAQRLGRQRLLHWQAQLKGSEQQLRQS 347
>gi|167038707|ref|YP_001661692.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter sp.
X514]
gi|300913734|ref|ZP_07131051.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
X561]
gi|307723250|ref|YP_003903001.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter sp.
X513]
gi|166852947|gb|ABY91356.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
X514]
gi|300890419|gb|EFK85564.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
X561]
gi|307580311|gb|ADN53710.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter sp.
X513]
Length = 518
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 192/361 (53%), Gaps = 5/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E+VGQ +V++L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C ++ + DV E+D+ N + V L +S P +++K++I
Sbjct: 64 LNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E DKLP + LSR Q++ F +I IA
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRLIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L RIC + I ++ L IA NGS+RDA LL+Q S IT E++G+
Sbjct: 184 QNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLGVA 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ L LLD + D + ++ + +++ ID + L ++ D++ G+ L++
Sbjct: 244 NDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEELKE 303
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+ + L+ AL+ + +K++R + T L V +L+L E S D
Sbjct: 304 ILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPEISYD 363
Query: 651 L 651
+
Sbjct: 364 M 364
>gi|392971161|ref|ZP_10336558.1| DNA polymerase III, gamma and tau subunits [Staphylococcus equorum
subsp. equorum Mu2]
gi|392510894|emb|CCI59826.1| DNA polymerase III, gamma and tau subunits [Staphylococcus equorum
subsp. equorum Mu2]
Length = 572
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 188/351 (53%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ V ++L +AI++ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQSFEDVVGQEHVTKTLRNAIAKSKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G + DV E+D+ N D + ++ P S+FK++I
Sbjct: 65 LERTDGEPCNECAICKGITRGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SRSQ++ F I + +I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRSQRFDFKAISEDEIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
RL+ + + I +D AAL+FIA S G +RDA ++DQ G + +TL A + G V
Sbjct: 185 ERLKFVANSQEIEYDTAALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC--LEDCS 592
L +LL + D + + + + +LI+ + + D + K +E
Sbjct: 245 DASALNELLKEVVQGDVKSAFSTYHQFISQGKEVNRLINDMIYFVRDTIMNKTSNVETEY 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A +F D+ L + + I+++T +R S +Q+ V L++++
Sbjct: 305 DALMHF--------DLDVLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKIA 347
>gi|169343396|ref|ZP_02864400.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
C str. JGS1495]
gi|169298482|gb|EDS80568.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
C str. JGS1495]
Length = 547
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D +PC C C + G + D+ E+D+ N D + ++ PP +RFK++I
Sbjct: 65 LDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +I DI
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISKKDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR+I E+ I D +LD +A S+G++RD+ +LDQ +S+ K+ ++G+V
Sbjct: 185 GRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
++D L ++D + D N + EL+ + D I L NL+M + E
Sbjct: 245 TNDNLFKIVDSIIKRDIENAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNPEEV 304
Query: 591 CSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
A +N ++ ++++ R ++I+ E +++ ++SK +L +A++++ E
Sbjct: 305 LDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKIE 362
>gi|167038580|ref|YP_001666158.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116975|ref|YP_004187134.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166857414|gb|ABY95822.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319930066|gb|ADV80751.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 518
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 119/361 (32%), Positives = 192/361 (53%), Gaps = 5/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E+VGQ +VR+L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C ++ + DV E+D+ N + V L +S P +++K++I
Sbjct: 64 LNNKDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E DKLP + LSR Q++ F +I IA
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRLIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L RIC + I ++ L IA NGS+RDA LL+Q S IT E++G+
Sbjct: 184 QNLDRICNDSGIKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLGVA 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ L LLD + D + ++ + +++ ID + L ++ D++ G+ L++
Sbjct: 244 NDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEELKE 303
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+ + L+ AL+ +K++R + T L V +L+L E S D
Sbjct: 304 ILYSDVETVKERVQNFGTAFLTNALEKFINLQKEVRYAISPLTLLEVTILRLIKPEISYD 363
Query: 651 L 651
+
Sbjct: 364 M 364
>gi|392947858|ref|ZP_10313481.1| DNA polymerase III subunits gamma and tau [Lactobacillus pentosus
KCA1]
gi|392436923|gb|EIW14824.1| DNA polymerase III subunits gamma and tau [Lactobacillus pentosus
KCA1]
Length = 567
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 190/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 64 HHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I E+ + +D+ AL IAA + G +RDA +LDQ+ G +TL A + G V
Sbjct: 184 DRMVYILNEKGVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDNTVTLDDALMVTGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L + + +T + RE+++ D + I L + D+L A + ++
Sbjct: 244 TKQLLANYVTQVTHHETKPALETMREILQEGKDANRFIEDLISYTRDVLLYQQAPEMVDS 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F E D + L + +K L++ ++Q+R + H +L V ++L+
Sbjct: 304 VAMGEDDQQFEAFAKEIDAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKLA 357
>gi|282859211|ref|ZP_06268333.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
JCVIHMP010]
gi|424900327|ref|ZP_18323869.1| DNA polymerase III, subunit gamma/tau [Prevotella bivia DSM 20514]
gi|282588030|gb|EFB93213.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
JCVIHMP010]
gi|388592527|gb|EIM32766.1| DNA polymerase III, subunit gamma/tau [Prevotella bivia DSM 20514]
Length = 595
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 194/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPATFDSVVGQAALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTTARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + C C C F+ GRS ++ E+D+ N + + LM+ +PP ++K+FII
Sbjct: 68 PTSEGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKDLMEQTRIPPQIGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + + L +LE V+F++ T E K+ + LSR Q Y F ++ DI
Sbjct: 128 DEVHMLSSQAFNAFLKTLEEPPAQVIFILATTEKHKILPTILSRCQIYDFERMSVPDIIE 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+R+ +E I +++ AL+ IA K++G +RDA + DQ++ + IT E + ++
Sbjct: 188 HLKRVAAKENITYEEKALNIIAEKADGGMRDALSVFDQVASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+D +++DLAL + S+ ++ + D +LI+ LA+ + ++L K L +
Sbjct: 248 EDNYFNIIDLALQNKVSDIMVVMNNAINKGFDAGRLINGLASHVRNVLMAKDVATLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE +K + + ++ L +AL+ +++ + R S ++ + L++++
Sbjct: 308 ASEQQKTRYQEQAAKCPTSFLYKALQQMNQCDVNYRQSSNKRLLAELTLIEVA 360
>gi|395243165|ref|ZP_10420152.1| DNA polymerase III, gamma and tau subunits [Lactobacillus hominis
CRBIP 24.179]
gi|394484395|emb|CCI81160.1| DNA polymerase III, gamma and tau subunits [Lactobacillus hominis
CRBIP 24.179]
Length = 610
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 194/357 (54%), Gaps = 17/357 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI R ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDAVVGQEAITDTLKNAIKRQKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCKAADQGSLNDIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYTFKRIDSQDLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SR+ I +E + F+ ALD IA ++G +RDA +LDQ LS KI A ++ G
Sbjct: 185 SRMTYILNQEGVEFEPKALDIIAQVADGGMRDALSILDQILSYDQDKIKYEDALKITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIR-ARELMRSKIDPMQLISQLANL---IMDILAGKCLED 590
+++ +LL L L++ S+ ++ +EL+ + ++ ++ L +M L G
Sbjct: 245 DQEKIENLL-LDLANQKSDVALKTVKELLDNGASSKNILDEIIALSVKVMMALKG----- 298
Query: 591 CSEARKNFFGKHTSEA----DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + FF ++ + + KLS+ + + ++ LR + Q L V +++ S
Sbjct: 299 --DTAQTFFTENYQDKIKGIAVNKLSQIVDLANQALNDLRYTNQQQIPLDVFVVKTS 353
>gi|33862332|ref|NP_893892.1| DNA polymerase III subunits gamma/tau [Prochlorococcus marinus str.
MIT 9313]
gi|33640445|emb|CAE20234.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9313]
Length = 606
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 163/299 (54%), Gaps = 2/299 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD LVGQ+ + +L A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 NCDQPTPEPCGNCELCKSIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I EAI + AL +A ++ G +RDAE LLDQLSLL I +EL+G V
Sbjct: 188 EQHLEMIATREAIPIEPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKAEAVWELMGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ ELL L + +D + + R L+ DP L+ LA ++ D++ D E
Sbjct: 248 PEQELLKLAEALAQADPLSLLETCRNLLNRGRDPGALLQGLAAVLRDLVLMTAAPDRPE 306
>gi|260591457|ref|ZP_05856915.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis
F0319]
gi|260536488|gb|EEX19105.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis
F0319]
Length = 604
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 195/353 (55%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
++ + C C C F+ GRS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 68 PTKEGEACNECESCKAFTEGRSYNIFELDAASNNSVENIKTLMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ +I +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E I +++ AL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKAVAEKENIQYEEQALNIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+D ++++LAL + S+ ++ ++ D LI+ LA+ + ++L K L +
Sbjct: 248 EDNYFNIINLALENKVSDIMVLLNNVINKGFDGGHLINGLASHVRNVLMAKDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + L ALKI++ + + R S ++ + + L+Q++
Sbjct: 308 VSDQQRKRYQEQAQKCPTLFLYNALKIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|395240954|ref|ZP_10417976.1| Possible DNA-directed DNA polymerase [Lactobacillus gigeriorum
CRBIP 24.85]
gi|394475462|emb|CCI87953.1| Possible DNA-directed DNA polymerase [Lactobacillus gigeriorum
CRBIP 24.85]
Length = 573
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 188/351 (53%), Gaps = 3/351 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +A+ R ++ +LF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITETLKNALVRDTISHAFLFAGPRGTGKTSCAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECPNCLAADKGALADIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPAHVVFILATTELQKVPATIISRTQRYNFKRISKADLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I+++ A+ IA ++G +RDA +LDQ LS K + + A ++ G
Sbjct: 185 KRMKFILEQEQISYEDDAIAVIAQVADGGMRDALSILDQLLSYEQKSVKYTDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL--EDCS 592
+ +++ LL LS+++ + +A+EL ++ +L +L L K E +
Sbjct: 245 AKEKIEQLLLKILSANSGEALKQAKELQDEGATAKNILDELIDLTTKALIAKQTQQEQAN 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E F ++++L + + + + LR + Q L V L+Q S
Sbjct: 305 EFITKDFLTQIGNYELEQLFKLVDLANAALNDLRYTNQQQIPLEVFLVQAS 355
>gi|282878261|ref|ZP_06287057.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC
35310]
gi|281299679|gb|EFA92052.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC
35310]
Length = 593
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 197/363 (54%), Gaps = 7/363 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ+ ++ +L +A+ G + YLF GPRG GKT+ +RIFA A+NCL+
Sbjct: 8 ARKYRPMTFDAVVGQSALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLN 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N + + SLM +PP ++K+FII
Sbjct: 68 PTADGEACNECESCQAFNEQRSYNIFELDAASNNSVENIKSLMDQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + +SR Q Y F ++ DI +
Sbjct: 128 DEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERMATTDIIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I ++ AAL+ IA K++G +RDA + DQ S IT E + ++
Sbjct: 188 HLKNVAQQEGITYEDAALNIIAEKADGGMRDALSVFDQAASFCQGNITYDKVLEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++DL+L + S+ ++ ++ D L + LA+ I ++L K L +
Sbjct: 248 ADNYFKMVDLSLENKVSDVMVLLNSILAKGFDGGLLTNGLASHIRNVLMAKDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
SE ++ + + + + L +ALKIL+ + R S ++ + + L++++ + D
Sbjct: 308 VSEQQRQKYQQQAQKCPTKFLYQALKILNRCDVNYRQSSNKRLLVELTLIEVAQVTQADD 367
Query: 651 LND 653
+D
Sbjct: 368 ASD 370
>gi|299141517|ref|ZP_07034653.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
gi|298576853|gb|EFI48723.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
Length = 599
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 192/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
ED + C C C F+ RS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 68 PGEDGEACNACESCKAFNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ G+
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNTIE 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E+I +D+ AL IA K++G +RDA + DQ S IT E + ++
Sbjct: 188 HLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE-----D 590
D ++D AL++ S ++ ++ D LI LA + ++L + ++ +
Sbjct: 248 SDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMARDVQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + + + L +ALK+L++ + + S ++ + + L+Q++
Sbjct: 308 TSQQQREKYHEQSKKCPVNFLYQALKLLNQCDINYKQSSNKRLLVEITLIQVA 360
>gi|336399730|ref|ZP_08580530.1| DNA polymerase III, tau subunit [Prevotella multisaccharivorax DSM
17128]
gi|336069466|gb|EGN58100.1| DNA polymerase III, tau subunit [Prevotella multisaccharivorax DSM
17128]
Length = 604
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 196/353 (55%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC +
Sbjct: 8 ARKYRPMTFSSVVGQEALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEN 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+D + C C C F+ GRS ++ E+D+ N + + +LM+ +PP + R+K+FII
Sbjct: 68 PTQDGEACNECESCRAFNEGRSMNIFELDAASNNSVENIKTLMEQTLIPPQTGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E +K+ + LSR Q Y F ++ +I
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPAHVIFILATTEKNKILPTILSRCQIYDFERMTVPEIIR 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L + +E I +++ AL+ IA K++G +RDA + DQ+ S IT + + ++
Sbjct: 188 HLEMVAGKEGITYEEEALNVIAEKADGGMRDALSIFDQVASFCQGHITYEKVLQDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++DL+L + ++ ++ +++ D +I+ LA+ + +++ K L +
Sbjct: 248 ADNYFKIIDLSLENKAADIMVLLDSIIQRGFDGSNVINGLASHVRNVMMAKDEQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + ++ L +ALKIL+E + Q R S ++ + + L++++
Sbjct: 308 VSQNQRQKYKDQAAKCPQTFLYQALKILNECDVQYRQSSNKRLLVELTLIRVA 360
>gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-049-V-Sch6]
gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-049-V-Sch6]
Length = 763
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 180/354 (50%), Gaps = 6/354 (1%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+N
Sbjct: 4 MALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAIN 63
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C PC C C SG+S DV E+D+ D + +L +S P R K+F
Sbjct: 64 CEHGPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVF 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DI
Sbjct: 124 IIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGI 533
A RL+ + +E + A IA ++G +RDA +LDQ + + +IT ++ ELIG+
Sbjct: 184 AQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPAVVEELIGL 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
VS D ++ L + D + + + D Q++ L + +L K D E
Sbjct: 244 VSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQIMEALTQHLRALLIAKVAPDAEE 303
Query: 594 AR-----KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + F + + + +++ +K L + + T + + LL L
Sbjct: 304 LKVYDSFRTEFLEQAKDIEFGTINQYIKQLQSIMSDAKQVDNPRTVIEMGLLVL 357
>gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-134-V-Col7a]
gi|429759877|ref|ZP_19292372.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica KON]
gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-134-V-Col7a]
gi|429179097|gb|EKY20359.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica KON]
Length = 804
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 180/354 (50%), Gaps = 6/354 (1%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +K+RP F ++VGQ+ V +L+ AI V YLF GPRGTGKTS ++IFA A+N
Sbjct: 4 MALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAIN 63
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C PC C C SG+S DV E+D+ D + +L +S P R K+F
Sbjct: 64 CEHGPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRESVKFMPVEGRKKVF 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L E W +L ++E HV+F+ T E++KLP + +SR Q+Y F +I DI
Sbjct: 124 IIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDDI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGI 533
A RL+ + +E + A IA ++G +RDA +LDQ + + +IT ++ ELIG+
Sbjct: 184 AQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPAVVEELIGL 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
VS D ++ L + D + + + D Q++ L + +L K D E
Sbjct: 244 VSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQIMEALTQHLRALLIAKVAPDAEE 303
Query: 594 AR-----KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + F + + + +++ +K L + + T + + LL L
Sbjct: 304 LKVYDSFRTEFLEQAKDIEFGTINQYIKQLQSIMSDAKQVDNPRTVIEMGLLVL 357
>gi|126697186|ref|YP_001092072.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9301]
gi|126544229|gb|ABO18471.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9301]
Length = 586
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 191/355 (53%), Gaps = 14/355 (3%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
QK+RPN DELVGQ + +L A+ + YLF+GPRGTGKTS++RIFA +LNC +
Sbjct: 10 QKYRPNNLDELVGQKFISITLKQALLTKKIAPAYLFNGPRGTGKTSSARIFAKSLNCQAF 69
Query: 359 EDQK--PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PC C C + G + D+ E+D+ + + +++ A P +R+K+++I
Sbjct: 70 DQPTITPCCKCDLCRQITDGSALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYVI 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DEC +L +L ++E VVF++ T +++ + SR QK+ F +I DI
Sbjct: 130 DECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLSTIKSRCQKFDFRRISPSDIFQ 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L I +E+I ++ AL IA +SNG +RDA+ LL+QL+LL + IT++ L+G VS+
Sbjct: 190 HLSEIAEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQLNLLPEGITINNIQNLLGEVSE 249
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
+EL +L+ + ++ + +I +L + +P+Q+I L N+ D+L S+
Sbjct: 250 NELTNLIKSLVENNPESLIITCNKLYDAGNEPLQIIIGLLNITRDLLLHTTNNKYSDL-- 307
Query: 597 NFFGKHTSEADMQKLSRALKI---------LSETEKQLRMSKHQTTWLTVALLQL 642
++ + ++ K+S+ + L E Q++ S + W + L L
Sbjct: 308 -YYTSDEFQDELNKISKTINKSTIINWHNNLRNIEYQIKSSDNPRLWFEIHLTGL 361
>gi|417836966|ref|ZP_12483206.1| DNA polymerase III subunit gamma and tau [Lactobacillus johnsonii
pf01]
gi|338762645|gb|EGP13912.1| DNA polymerase III subunit gamma and tau [Lactobacillus johnsonii
pf01]
Length = 602
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 196/357 (54%), Gaps = 3/357 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I+F++ AL+ IA ++G +RD+ +LDQ LS K+ A + G
Sbjct: 185 ARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L+ +TS + L++ ++ +L +L + +LA K ++ +
Sbjct: 245 AQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTVKGMLAIKSNKEETF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+N + ++ +K ++ + LR + Q L V ++Q++ + + D
Sbjct: 305 LTEN-YASELAKIPEEKFYSLVQAANNALNDLRYTNQQQIPLDVFVVQVTQAPAKAD 360
>gi|218246891|ref|YP_002372262.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 8801]
gi|218167369|gb|ACK66106.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
8801]
Length = 648
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 195/358 (54%), Gaps = 10/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ D PCG C C + G + DV E+D+ D + +++ A P R+K++
Sbjct: 67 AFSDPTATPCGKCEVCRAITRGSALDVIEIDAASNTGVDNIREIIERAQFAPVQCRYKVY 126
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 127 VIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIPLAAM 186
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
S L +I +E I+ Q AL +A +NG +RDAE LLDQLSLL IT +EL+G V
Sbjct: 187 VSHLGKIAQQETIDIAQDALILVAQIANGGLRDAESLLDQLSLLSGTITTDKVWELVGAV 246
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKCL---ED 590
+ +LL LL A++S+ + VI R R LM +P+ ++ LA +++L K D
Sbjct: 247 PEQDLLLLLQ-AIASNNAELVIDRCRHLMNRGREPLVVLQNLAGFYLNLLIAKTAPNRPD 305
Query: 591 CSEARKNFFGKHTSEA---DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ +EA +++ + + + L ++E QL+ + WL V LL L S
Sbjct: 306 MVAVTAPTWQALCNEAHQWNLETILQGQQRLKDSEFQLKNTTQPRLWLEVTLLSLLPS 363
>gi|427413412|ref|ZP_18903603.1| DNA polymerase III, subunit gamma and tau [Veillonella ratti
ACS-216-V-Col6b]
gi|425715405|gb|EKU78393.1| DNA polymerase III, subunit gamma and tau [Veillonella ratti
ACS-216-V-Col6b]
Length = 800
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 157/299 (52%), Gaps = 1/299 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++VGQ V +L+ AI V YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPQTFTDVVGQKQVSETLMRAIREDKVAHAYLFSGPRGTGKTSVAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C +G+S DV E+D+ D + SL +S P R KIFI
Sbjct: 65 EKGPTDHPCNECTSCKQILNGQSMDVLEIDAASNRGIDEIRSLRESVKFLPVEGRKKIFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E W +L ++E H++F+ T E+DKLP + LSR Q+Y F +I DIA
Sbjct: 125 IDEAHMLTNEAWNALLKTIEEPPPHIMFIFATTEVDKLPVTILSRCQRYTFRRITAEDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
L + E I A IA ++G +RDA +LDQ S + K IT +IG+V
Sbjct: 185 EHLLHVATESNIQLAPDAAQLIAIHADGGLRDALSILDQCSGMTKDMITAKTVETMIGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ +++ LD D + ++ +++ + D Q+I L + +L K + E
Sbjct: 245 GKEWIMEFLDYLRRGDGAAVLVASKQALSEGRDSKQIIEALIQHVRALLIEKVMPTAEE 303
>gi|18309027|ref|NP_560961.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
str. 13]
gi|168213992|ref|ZP_02639617.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
CPE str. F4969]
gi|18143702|dbj|BAB79751.1| DNA polymerase III gamma and tau subunits [Clostridium perfringens
str. 13]
gi|170714512|gb|EDT26694.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
CPE str. F4969]
Length = 547
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 195/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D +PC C C + G + D+ E+D+ N D++ ++ PP +RFK++I
Sbjct: 65 LDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDKIRDIIDDVQYPPQEARFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +I DI
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRKDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR+I E+ I D +LD +A S+G++RD+ +LDQ +S+ K+ ++G+V
Sbjct: 185 GRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
++D L ++D + D + + EL+ + D I L NL+M + E
Sbjct: 245 TNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNPEEV 304
Query: 591 CSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
A +N S+ ++++ R ++I+ E +++ ++SK +L +A++++ E
Sbjct: 305 LDTAEENIEKLKVQGSKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKIE 362
>gi|123969399|ref|YP_001010257.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. AS9601]
gi|123199509|gb|ABM71150.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. AS9601]
Length = 584
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 196/368 (53%), Gaps = 14/368 (3%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
QK+RPN DELVGQ + +L A+ + YLF+GPRGTGKTS++RIFA +LNC +
Sbjct: 10 QKYRPNNLDELVGQKFISITLKQALLTKKIAPAYLFNGPRGTGKTSSARIFAKSLNCQAF 69
Query: 359 EDQK--PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PC C C + G + D+ E+D+ + + +++ A P +R+K+++I
Sbjct: 70 DQPTITPCCKCDLCRQITEGSALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYVI 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DEC +L +L ++E VVF++ T +++ + SR QK+ F +I DI
Sbjct: 130 DECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIKSRCQKFDFRRISPSDIFQ 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L I +E+I ++ AL IA +SNG +RDA+ LL+QL+LL + IT++ L+G VS+
Sbjct: 190 HLSEISEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQLNLLPEGITINGIQNLLGEVSE 249
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
EL +L+ + ++ + + +L S +P+Q+I L N+ D+L S+
Sbjct: 250 SELTNLIKSLVENNPESLIDTCNKLYDSGNEPLQIIIGLLNITRDLLLHTTNNKYSDL-- 307
Query: 597 NFFGKHTSEADMQKLSRAL---KI------LSETEKQLRMSKHQTTWLTVALLQLSSSES 647
++ ++ K+S+ + KI L E Q++ S + WL + L L S+
Sbjct: 308 -YYTSDEFRDELDKISKTINKSKIVNWHNNLRNIEYQIKSSDNPRLWLEIHLTGLLDSQE 366
Query: 648 SLDLNDSK 655
L + K
Sbjct: 367 INSLENKK 374
>gi|254525893|ref|ZP_05137945.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str.
MIT 9202]
gi|221537317|gb|EEE39770.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str.
MIT 9202]
Length = 586
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 189/355 (53%), Gaps = 14/355 (3%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
QK+RPN DELVGQ + +L A+ + YLF+GPRGTGKTS++RIFA +LNCL+
Sbjct: 10 QKYRPNNLDELVGQKFISITLKEALLTKKIAPAYLFNGPRGTGKTSSARIFAKSLNCLAF 69
Query: 359 EDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PC C C + G + D+ E+D+ + + +++ A P +R+K+++I
Sbjct: 70 DKPTINPCCKCDLCRQITDGNALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYVI 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DEC +L +L ++E V+F++ T +++ + SR QK+ F +I GDI
Sbjct: 130 DECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQKFDFRRISPGDIFQ 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L I +E+I ++ AL IA +SNG +RDA+ L +QL+LL + IT+ L+G VS+
Sbjct: 190 HLTEIAEKESIEYEVQALKMIAKRSNGGMRDAQSLFEQLNLLPEGITIKNIQNLLGEVSE 249
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
EL +L+ + ++ + +I +L + +P Q+I L N+ D+L S+
Sbjct: 250 IELTNLIQSLVENNPESLIITCNKLYDAGNEPNQIIIGLLNITRDLLLYTTDNKYSDL-- 307
Query: 597 NFFGKHTSEADMQKLSRALKI---------LSETEKQLRMSKHQTTWLTVALLQL 642
++ + ++ K+S+ + L E Q++ S + W + L L
Sbjct: 308 -YYTSDEFQDELDKISKTINKSTIINWHNNLRNIEYQIKTSDNPRLWFEIHLTGL 361
>gi|331701734|ref|YP_004398693.1| DNA polymerase III subunits gamma and tau [Lactobacillus buchneri
NRRL B-30929]
gi|329129077|gb|AEB73630.1| DNA polymerase III, subunits gamma and tau [Lactobacillus buchneri
NRRL B-30929]
Length = 600
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 189/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ+++ R+L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDEIVGQSIITRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 HYLKDGEPCNQCETCKAINEGSLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+QK+ F +IK DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIKPQDIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I ++ + +D AL IA + G +RDA +LDQ +S KIT A + G V
Sbjct: 185 ERMKYILDQKKVEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDNKITYENALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+++ L + ++ DT + +I ++++ D + I L + DIL + E
Sbjct: 245 TNELLTTYMQQVVNKDTKSALITIQKILDEGKDASRFIEDLTSYCQDILLYQQDPGIVEE 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F + + Q + + + L+ LR + H +L V ++++
Sbjct: 305 MELGIIDDQFKTLSGQISDQAIYQMINELNAISNSLRFTAHPDVYLEVLTVKIT 358
>gi|281425324|ref|ZP_06256237.1| hypothetical protein HMPREF0971_02296 [Prevotella oris F0302]
gi|281400617|gb|EFB31448.1| DNA polymerase III, gamma and tau subunits [Prevotella oris F0302]
Length = 599
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 192/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
ED + C C C F+ RS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 68 PGEDGEACNACESCKAFNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ G+
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNTIE 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E+I +D+ AL IA K++G +RDA + DQ S IT E + ++
Sbjct: 188 HLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE-----D 590
D ++D AL++ S ++ ++ D LI LA + ++L + ++ +
Sbjct: 248 SDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMARDVQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + + + L +ALK+L++ + + S ++ + + L+Q++
Sbjct: 308 TSQQQREKYHEQSKKCPVNFLYQALKLLNQCDINYKQSSNKRLLVEITLIQVA 360
>gi|256751423|ref|ZP_05492301.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749642|gb|EEU62668.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus CCSD1]
Length = 518
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 242/496 (48%), Gaps = 19/496 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E+VGQ +V++L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C ++ + DV E+D+ N + V L +S P +++K++I
Sbjct: 64 LNNTDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQAKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E DKLP + LSR Q++ F +I IA
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRLIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L RIC + + ++ L IA NGS+RDA LL+Q S IT E++G+
Sbjct: 184 QNLDRICNDSGMKIEEKGLKTIAIYGNGSMRDAISLLEQCASYKEGLITYEDVCEMLGVA 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ L LLD + D + ++ + +++ ID + L ++ D++ G+ L++
Sbjct: 244 NDEVLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMVLYKTGGEELKE 303
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+ + L+ AL+ + +K++R + T L V +L+L E S D
Sbjct: 304 ILYSDVETIKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRLIKPEISYD 363
Query: 651 LNDSKLCLRYAHDK--DGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIW 708
+ + DK G ++ + S + L ++ LE +W
Sbjct: 364 MMSLLARVEQIEDKLEKGQFFLKEEKKEVENKKINISLENKENVTLQIVQQEDIDLEKVW 423
Query: 709 KTATELCQSN--SLKTFLRKQGKLSSLHVNHGLAVAELEFHH---RDYVSRAE-KSWKLI 762
E+ + +L F+ K + ++ G V E + ++ +S+AE KS+ I
Sbjct: 424 AEVKEMIKKERIALYAFIEK----GTPYLKKGTIVVEYPEEYALLKEELSKAENKSF--I 477
Query: 763 ASTLQSVLGCNVEIRL 778
L+ ++G + ++
Sbjct: 478 EGILKELVGKAIPLKF 493
>gi|299542068|ref|ZP_07052384.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
ZC1]
gi|424740299|ref|ZP_18168702.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
ZB2]
gi|298725383|gb|EFI66031.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
ZC1]
gi|422946201|gb|EKU40619.1| DNA polymerase III subunit gamma/tau [Lysinibacillus fusiformis
ZB2]
Length = 595
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 181/350 (51%), Gaps = 10/350 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F E+ GQ V R+L +A+ T YLF GPRGTGKTS ++IFA ALNC
Sbjct: 10 YRPQSFREMSGQTHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKALNCEHAPS 69
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
++PC C C + G DV E D+ +R + + +++ P SSR+K++IIDE
Sbjct: 70 KEPCNECATCISITDGSHPDVIEFDAASNSRVEEIRDIIEKVRFAPASSRYKVYIIDEVH 129
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H VF++ T E KLP + +SR Q++ F ++ DI R++
Sbjct: 130 MLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLSTNDIIERMKV 189
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDEL 539
+ + + +++ L IA + G +RDA LLDQ +S G+K+ L + G +S D
Sbjct: 190 VLEDIDLPYEEQGLKVIAQSAAGGMRDALSLLDQVVSFSGEKLKLEDTLLVTGSISQDIF 249
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL-------AGKCLEDCS 592
DL + D + + +L+ DP++L L D+L + LE S
Sbjct: 250 YDLAEALKVKDVAQMLALLEQLIADGKDPLRLSEDLITFFRDLLLLQTSDDLAELLELVS 309
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ F H +M L + IL++T++++R S H +L ALL++
Sbjct: 310 PEERVFTLAHEFAPNM--LYGYIDILAKTQQEMRFSHHTKIYLETALLKM 357
>gi|339637543|emb|CCC16477.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
pentosus IG1]
Length = 567
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 190/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 64 HHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I E+ + +D+ AL IAA + G +RDA +LDQ+ G +TL A + G V
Sbjct: 184 DRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDNTVTLDDALMVTGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L + + +T + RE+++ D + I L + D+L A + ++
Sbjct: 244 TKQLLANYVTQVTHHETKPALETMREILQEGKDANRFIEDLISYTRDVLLYQQAPEMVDS 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F E D + L + +K L++ ++Q+R + H +L V ++L+
Sbjct: 304 VAMGEDDQQFEAFAKEIDAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKLA 357
>gi|334881817|emb|CCB82724.1| DNA-directed DNA polymerase III, gamma/tau subuni t [Lactobacillus
pentosus MP-10]
Length = 567
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 190/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 64 HHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I E+ + +D+ AL IAA + G +RDA +LDQ+ G +TL A + G V
Sbjct: 184 DRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDNTVTLDDALMVTGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L + + +T + RE+++ D + I L + D+L A + ++
Sbjct: 244 TKQLLANYVTQVTHHETKPALETMREILQEGKDANRFIEDLISYTRDVLLYQQAPEMVDS 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F E D + L + +K L++ ++Q+R + H +L V ++L+
Sbjct: 304 VAMGEDDQQFEAFAKEIDAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKLA 357
>gi|296120960|ref|YP_003628738.1| DNA polymerase III subunits gamma and tau [Planctomyces limnophilus
DSM 3776]
gi|296013300|gb|ADG66539.1| DNA polymerase III, subunits gamma and tau [Planctomyces
limnophilus DSM 3776]
Length = 682
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 191/349 (54%), Gaps = 19/349 (5%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L+++FRP F E+VGQ+ + ++L +AI G V YLF G RG GKTS +RIFA ALNC
Sbjct: 9 LARRFRPQTFSEVVGQDRIAQTLRNAILEGRVAHAYLFTGARGVGKTSMARIFAKALNCP 68
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + PC C C S+G+ DV E+D D + +L + + +R+K++II
Sbjct: 69 NAVEAVPCNTCEICRAVSAGQDVDVSEIDGASNRGIDDIRTLRANVNVKSMRTRYKVYII 128
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + +L +LE Q V F+ T E +KLP + LSR Q++ F + I
Sbjct: 129 DEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILSRCQRFDFGTVNIESIGE 188
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIVS 535
RLR+I E D A++ ++ ++NGS+RD++ L DQ+ G + +T++ + L+G S
Sbjct: 189 RLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVLAFGHQHVTVADVHRLLGTAS 248
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKI------DPM--QLISQLANLIMDI--LAG 585
DD +++L+ + + RA E + I D + QLIS L +L++ + G
Sbjct: 249 DDRVIELVQALIDRHAA----RALEALDQAILDGVQLDALTDQLISYLRDLMVTAAGVKG 304
Query: 586 KCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTW 634
L +E+ ++ ++ +S AL+IL+E +++M++ TW
Sbjct: 305 IALLGATESSRSRVETQAEAWGLKTISAALQILAEA--KIKMAR--ATW 349
>gi|307591376|ref|YP_003900175.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7822]
gi|306986230|gb|ADN18109.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7822]
Length = 477
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/495 (30%), Positives = 225/495 (45%), Gaps = 40/495 (8%)
Query: 300 KFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE 359
K+RP +LVGQ + +L +AI+ G + YLF GPRGTGKTS +RI A +LNCLS E
Sbjct: 9 KYRPQTLADLVGQQPIATTLTNAITTGRIAPAYLFSGPRGTGKTSTARILAKSLNCLS-E 67
Query: 360 DQK---PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLM-KSAFLPPFSSRFKIFI 415
D PCG C C +S S DV E+D+ N +++ L+ KS F+P + +K++I
Sbjct: 68 DNPTVTPCGQCDSCGAIASSNSLDVIEIDAASNNSVEQIRDLIEKSQFVP--HNLYKVWI 125
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DEC L +L +LEN + VVF++ T E ++L + +SR Q+++F + D I
Sbjct: 126 LDECHALSHFAIQALLKTLENPPERVVFILCTTEPERLGDTIISRCQRFNFRRESDSVII 185
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L I E I D L IA G +RDA+ LL+QLSLL +T YEL G V
Sbjct: 186 EHLAAIAQRENITIDPHVLRLIAQHCQGGLRDAQCLLEQLSLLSNTLTPEQVYELTGSVP 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILA--------GK 586
+ +LL L + DT + R REL +DP+ + L I +LA GK
Sbjct: 246 EQDLLLLFNAIQEEDTEQVIKRTRELYEVGLDPLVIAQNLLEFHITALLAQTADNAELGK 305
Query: 587 CLEDCSEARKNF-FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
E + H A + KL L Q+++S+ L V L+ L +
Sbjct: 306 VTASTWEILQGLNIPDHRLIAQISKLKSGL-------TQIKLSRVPRIILEVTLIGLFAP 358
Query: 646 ESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLE 705
ND Y S + H + + L L+
Sbjct: 359 ------NDV-----YVPSPPNSSKELSGSAERVPHPSVNKFLTPLPASIATLPCEPINLD 407
Query: 706 SIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIAST 765
S+WK +L L +Q KL +L N VA ++ + R +S ++ +
Sbjct: 408 SLWKQIIAAQTQKALSALLNQQAKLVALQEN----VATIQVPEV-FKPRISQSSSTLSDS 462
Query: 766 LQSVLGCNVEIRLLC 780
+ +LG V I L+
Sbjct: 463 FEKILGHKVNIELVV 477
>gi|255974819|ref|ZP_05425405.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2]
gi|307278710|ref|ZP_07559778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0860]
gi|255967691|gb|EET98313.1| DNA-directed DNA polymerase III [Enterococcus faecalis T2]
gi|306504650|gb|EFM73852.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0860]
Length = 586
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ NL+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRNLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|440685071|ref|YP_007159865.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
gi|428682190|gb|AFZ60955.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
Length = 499
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/352 (35%), Positives = 184/352 (52%), Gaps = 13/352 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L QK+RP ELVGQ + +L +AI + YL G RGTGKTS +RIFA +LNC
Sbjct: 5 ALHQKYRPQTLAELVGQPYIKTALTNAIKHLQIAPAYLLTGSRGTGKTSTARIFAKSLNC 64
Query: 356 LSLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
L+ + KPCG+C+ C + S DV E+D+ N D +L++ L P + R++I
Sbjct: 65 LNSKKPTDKPCGICQSCRAIETSNSLDVSEIDAASNNGVDDARALIERCTLAPVAGRYRI 124
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
FI+DE L ++ +L +E HV+F++ T E K+ + +SR Q ++F +
Sbjct: 125 FILDENHQLTTQSQNALLKCIEEPPPHVIFILCTTEQHKVLPTIISRCQVFNFRTLSIKT 184
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I LR I E+I D AL IA S+G +RDA LL Q SLL IT E++G
Sbjct: 185 IVQHLRIIADAESIAVDDEALSAIARLSDGGLRDALQLLGQASLLDVDITAHHVMEIVGG 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------- 586
V++ EL+ +L +++T N + AR L+ S P +IS L D+L K
Sbjct: 245 VTEAELIAILQAISTNNTFNLLQVARVLVDSGKTPKLIISNLLQTYRDLLIIKSAPQEQA 304
Query: 587 CLEDC-SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
L C S + F KH + + L+ +L L + E LR + + T WL V
Sbjct: 305 LLTGCVSHTQLKAFAKH---WNFETLNLSLGELQKAENYLRYTVNATVWLEV 353
>gi|359404867|ref|ZP_09197676.1| DNA polymerase III, subunit gamma and tau [Prevotella stercorea DSM
18206]
gi|357559896|gb|EHJ41321.1| DNA polymerase III, subunit gamma and tau [Prevotella stercorea DSM
18206]
Length = 587
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 190/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC++
Sbjct: 8 ARKYRPMTFDSVVGQAALTATLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCMN 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + CG C C F+ GRS ++ E+D+ N + + SLM+ +PP ++K+FII
Sbjct: 68 PTTEGEACGECESCKAFAEGRSYNIFELDAASNNSVEHIKSLMEQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HVVF++ T E K+ + LSR Q Y F ++ + +
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPAHVVFILATTEKHKILPTILSRCQIYDFERMSVENTIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L+ + +E I +++ AL IA K++G +RDA + DQ S IT + E + +
Sbjct: 188 HLKYVAEKEGITYEEEALALIAEKADGGMRDALSIFDQTASFCQGNITYAKVIEDLNELD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D +D AL++ S ++ ++ D LI+ LA+ + ++L K L +
Sbjct: 248 TDNYFKFVDYALANKVSECMVLLNAIIEKGFDGGNLINGLASHVRNVLMAKDAQTLKLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE ++ + Q L +ALK++++ + R S ++ + + L+Q++
Sbjct: 308 VSEKQREKYSAQAKACPTQFLYKALKLMNQCDLSYRQSSNKRLLVELTLIQVA 360
>gi|385825345|ref|YP_005861687.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii DPC
6026]
gi|329666789|gb|AEB92737.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii DPC
6026]
Length = 602
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 195/357 (54%), Gaps = 3/357 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I+F++ AL+ IA ++G +RD+ +LDQ LS K+ A + G
Sbjct: 185 ARMTYILDQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L+ +TS + L++ ++ +L +L + +LA K ++ +
Sbjct: 245 AQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTVKGMLAIKSNKEETF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+N + ++ +K ++ + LR + Q L V ++Q++ + D
Sbjct: 305 LTEN-YASELAKIPEEKFYSLVQAANNALNDLRYTNQQQIPLDVFVVQVTQAPVKAD 360
>gi|254555739|ref|YP_003062156.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum JDM1]
gi|254044666|gb|ACT61459.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum JDM1]
Length = 565
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 190/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 64 HHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I E+ + +D+ AL IAA + G +RDA +LDQ+ G +TL A + G V
Sbjct: 184 DRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDNTVTLDDALMVTGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L + + DT + R++++ D + I L + D+L A + ++
Sbjct: 244 TKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEMVDS 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F + D + L + +K L++ ++Q+R + H +L V ++L+
Sbjct: 304 VAMGEDDQQFEAFAKQIDAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKLA 357
>gi|168206163|ref|ZP_02632168.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
E str. JGS1987]
gi|170662345|gb|EDT15028.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
E str. JGS1987]
Length = 547
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 193/358 (53%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D +PC C C + G + D+ E+D+ N D + ++ PP +RFK++I
Sbjct: 65 LDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +I DI
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRKDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR+I E+ I D +LD +A S+G++RD+ +LDQ +S+ K+ ++G+V
Sbjct: 185 GRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
++D L ++D + D + + EL+ + D I L D+L K +
Sbjct: 245 TNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRDLLMIKVTSNPEEV 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D +E ++ ++++ R +KI+ E +++ ++SK +L +A++++ E
Sbjct: 305 LDTAEENIEKLKVQGAKLKVEEIMRCIKIVQECDEEAKLSKQARVYLELAVIKMCKIE 362
>gi|427703526|ref|YP_007046748.1| DNA polymerase III subunits gamma and tau [Cyanobium gracile PCC
6307]
gi|427346694|gb|AFY29407.1| DNA polymerase III, subunit gamma/tau [Cyanobium gracile PCC 6307]
Length = 638
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 159/278 (57%), Gaps = 2/278 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ V +L A+ + + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDQLVGQKAVADTLSQALLQNRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ +PCG C+ C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 ASPAPTPEPCGRCQLCNDIAAGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I D+
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEDL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L+ I EE+I A+ +A +S G +RDAE LLDQLSLL + I ++L+G V
Sbjct: 188 VGHLQWIAAEESIGITPEAVHLVAQRSQGGLRDAESLLDQLSLLPEPIAADAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI 572
+ ELL L + ++D V REL+ +P ++
Sbjct: 248 PEVELLQLAEAMAAADPLQVVEGCRELLDRGREPAAVL 285
>gi|301058434|ref|ZP_07199455.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium
NaphS2]
gi|300447490|gb|EFK11234.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium
NaphS2]
Length = 564
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 192/369 (52%), Gaps = 18/369 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F++++GQ + ++L++AI G + Y+F GPRG GKTS +RIFA A+NC
Sbjct: 6 LARKWRPQVFEDVIGQEHITQTLVNAIKTGRLAHAYIFGGPRGVGKTSVARIFAKAINCA 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
E PC CR C + G S DV+E+D D + L +SA P +SR++I++I
Sbjct: 66 EGEPGIPCNRCRSCREITEGNSVDVQEIDGASNRGIDEIRELRESARYMPSASRYRIYVI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F+ T E K+P + LSR Q++ F +I I +
Sbjct: 126 DEVHMLTLPAFNALLKTLEEPPPHVKFIFATTESHKVPITILSRCQRFDFKRIALQKIVA 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L +I E + AL IA ++ GS+RDAE LLDQ +S G K++ E++GI+
Sbjct: 186 YLEKISGHEGVAIGTTALAMIAREAEGSMRDAESLLDQVVSFAGDKVSDDQVPEILGIID 245
Query: 536 DDELLD----LLD------LALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAG 585
+ + +++ LA+ + +E R+ L++Q NL++ ++A
Sbjct: 246 RGLIFESSSAIIEGAAPRCLAVVEKVYSRGYDIKEFYRA------LMAQFRNLLVSLIAP 299
Query: 586 -KCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ L D SE+ + + A +KL L L E LR S + L L++L +
Sbjct: 300 EENLIDMSESDRKEIRRQAEMAGTEKLQVVLNFLISREDALRFSTYPRLVLEATLIKLCT 359
Query: 645 SESSLDLND 653
L +D
Sbjct: 360 LGEYLSFDD 368
>gi|254993826|ref|ZP_05276016.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
FSL J2-064]
Length = 551
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 180/335 (53%), Gaps = 6/335 (1%)
Query: 321 SAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD 380
+AI + + YLF GPRGTGKTSA++IFA A+NC D +PC C C + G D
Sbjct: 2 NAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPD 61
Query: 381 VKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQH 440
V E+D+ N + + + + P +++K++IIDE +L + +L +LE +H
Sbjct: 62 VLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKH 121
Query: 441 VVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAK 500
V+F++ T E KLP + +SR Q++ F +I DI RL+ I EE I +D+ AL +A
Sbjct: 122 VIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARA 181
Query: 501 SNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRAR 559
+ G +RDA LLDQ+ G +++T+ A E+ G V+ + L L+ A D + +
Sbjct: 182 AEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLT 241
Query: 560 ELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK-----NFFGKHTSEADMQKLSRA 614
L+ DP++L+ L D+L + + E + + F AD K+
Sbjct: 242 ALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETLERALIDDDFVALAKRADSLKVYEF 301
Query: 615 LKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+KIL+ ++Q+R S H ++ VAL+QL+ + S+
Sbjct: 302 VKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSV 336
>gi|354567395|ref|ZP_08986564.1| DNA polymerase III, subunits gamma and tau [Fischerella sp. JSC-11]
gi|353542667|gb|EHC12128.1| DNA polymerase III, subunits gamma and tau [Fischerella sp. JSC-11]
Length = 634
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 192/360 (53%), Gaps = 10/360 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIRASKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ +PCG+C C + G S DV E+D+ D + +++ A P R+K++
Sbjct: 66 KSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIREIIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE +HVVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 VVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E IN + A+ +A + G +RDAE LLDQLSLL ++T ++L+G V
Sbjct: 186 VQHLSTIATKENININPEAITLVAQIAQGGLRDAESLLDQLSLLSGEVTPDHVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIR-ARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
S+ +LL LL A+++D V+ R+++ +P+ ++ LA L D+L K
Sbjct: 246 SERDLLTLLG-AIATDNPEAVLDCTRQILDRGREPLIILQNLAALYRDLLIAKTAPSRQN 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L C+ + D+ + + + L E QL+ + WL V LL L S +
Sbjct: 305 LVACTPQTWQALVSFAQQLDISTILQGQQHLRTAELQLKNTTQPRLWLEVTLLGLLPSAT 364
>gi|304382042|ref|ZP_07364594.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM
16973]
gi|304336796|gb|EFM03020.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM
16973]
Length = 592
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC++
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLRNAVKSGKLAHAYLFCGPRGVGKTTCARIFARAINCMN 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + CG C C F+ RS ++ E+D+ N + + +LM +PP ++K+FII
Sbjct: 68 PTTEGEACGTCESCKAFNEQRSYNIFELDAASNNSVENIKALMDQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + + L +LE HV+F++ T E K+ + LSR Q Y F ++ D +
Sbjct: 128 DEVHMLSTQAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVADTIA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+R+ +E I +++ AL IA K++G +RDA + DQ S +IT E + ++
Sbjct: 188 HLKRVAEQEGIGYEEEALAVIAEKADGGMRDALSIFDQSASFCQGQITYKKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++D+AL + SN ++ ++ D I LA+ ++L K L +
Sbjct: 248 SDNYFRIIDMALKQEVSNMMVLLDTVIGKGFDGGIFIQGLASYTRNVLMAKDERTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ + + + + +ALK++++ + R S ++ + + L+Q++
Sbjct: 308 VSKKQAERYKEQAQRCPTDFMYKALKLMNDCDVHYRQSNNKRLLVELTLIQIA 360
>gi|301300447|ref|ZP_07206647.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851944|gb|EFK79628.1| DNA polymerase III, subunit gamma and tau [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 579
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 191/359 (53%), Gaps = 9/359 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +LVGQ +V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFMDLVGQEMVTKTLKNAIITHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ +PC C C + G DV E+D+ N + + + P + +K++I
Sbjct: 65 RFSKEGEPCNECETCKAITEGCLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRITAESIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I ++ +++D AL IA + G +RDA LLDQ+ G +TL A + G V
Sbjct: 185 QRMIYILDQKNVDYDDKALKVIAKAAEGGMRDALSLLDQVISFGDNNVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
+ + L + L LS DT+N + ++++ D +LI L N D+L + E S+
Sbjct: 245 TQESLFNYLKFVLSKDTTNALKEIQQIVEQGKDANRLIEDLINYCRDLLLYQQAPEMVSD 304
Query: 594 ARKNFFGKHTSEADMQ-KLSRALKILSETEKQ---LRMSKHQTTW---LTVALLQLSSS 645
E Q +++ +I+ E KQ +R S HQ+ + LTV L QLS++
Sbjct: 305 GELGLLDDKFKELSQQINVTQIYQIIDELNKQQENMRFSSHQSIYLEVLTVKLTQLSTN 363
>gi|418274335|ref|ZP_12889833.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum subsp. plantarum NC8]
gi|376009901|gb|EHS83227.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum subsp. plantarum NC8]
Length = 565
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 190/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 64 HHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I E+ + +D+ AL IAA + G +RDA +LDQ+ G +TL A + G V
Sbjct: 184 DRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDNTVTLDDALMVTGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L + + DT + R++++ D + I L + D+L A + ++
Sbjct: 244 TKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEMVDS 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F + D + L + +K L++ ++Q+R + H +L V ++L+
Sbjct: 304 VAMGEDDQQFEAFAKQIDAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKLA 357
>gi|407472626|ref|YP_006787026.1| DNA polymerase III subunit gamma/tau [Clostridium acidurici 9a]
gi|407049134|gb|AFS77179.1| DNA polymerase III subunit gamma/tau [Clostridium acidurici 9a]
Length = 490
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 194/363 (53%), Gaps = 7/363 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ +KFRP FD+++GQ + L + I + YLF G RGTGKTS +RI A A+NC
Sbjct: 5 AIYRKFRPRVFDDVLGQEHITTILKNQILNDNIAHAYLFSGTRGTGKTSTARILARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D PC C C D+ E+D+ N + + L +++ PP R+K++I
Sbjct: 65 IDNKDGNPCNTCEVCEEILDESIMDIVEIDAASNNSVEDIRELRENSKYPPSKCRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L + +L LE +H++F++ T E KLP + +SR Q+Y F ++ DI
Sbjct: 125 VDEVHMLSKGAFNALLKVLEEPPKHLIFILATTEPQKLPATIISRCQRYDFKRVSIEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
++ IC+E +N ++ AL IA S+G++RDA +LDQ +S + +IT +GIV
Sbjct: 185 KNMKDICLEIDVNIEEKALYLIARNSDGAMRDALSILDQCISFIDGEITYDYILSTLGIV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
++D + ++++ + +D N + ++++ ID Q I + +++ K E+
Sbjct: 245 NNDLMFEIVNGIIDNDIDNVLNFIDTIVQNGIDINQFIKDMILHFRNLMISKTSSNSENT 304
Query: 592 SEARKNFFGK---HTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + F + + + D+ + L ILSE E + + S L V+++++ + S
Sbjct: 305 IDGSQEFIHQLKVQSEKIDLNTIITFLNILSEAETKSKWSTQPRVILEVSVIKMMETPVS 364
Query: 649 LDL 651
LD+
Sbjct: 365 LDI 367
>gi|110738810|dbj|BAF01328.1| STICHEL [Arabidopsis thaliana]
Length = 634
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 135/209 (64%), Gaps = 6/209 (2%)
Query: 258 DLEDNPLLSGEIGETAHYGRSGHKLI----NNEISTYSETPWSLSQKFRPNFFDELVGQN 313
DLE L G T++ + G + + E + ET S SQK+RP FF+EL+GQ+
Sbjct: 408 DLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFEELIGQS 467
Query: 314 VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373
+VV+SL++A+ R + YLF GPRGTGKTS +RIF+AALNC++ E+ KPCG C+EC F
Sbjct: 468 IVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECNDF 527
Query: 374 SSGRSRDVKEVDSVRINRSDRVGSLMKS--AFLPPFSSRFKIFIIDECQLLHGETWATVL 431
SG+S+D E+D +D+V L+K+ LP SS +K+F+IDEC LL +TW + L
Sbjct: 528 MSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSKTWLSFL 587
Query: 432 NSLENISQHVVFVMITPELDKLPRSALSR 460
LEN Q VVF+ IT +L+ +PR+ SR
Sbjct: 588 KFLENPLQKVVFIFITTDLENVPRTIQSR 616
>gi|42518518|ref|NP_964448.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC
533]
gi|41582803|gb|AAS08414.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC
533]
Length = 602
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 195/357 (54%), Gaps = 3/357 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I+F++ AL+ IA ++G +RD+ +LDQ LS K+ A + G
Sbjct: 185 ARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L+ TS + L++ ++ +L +L + +LA K ++ +
Sbjct: 245 AQEKIEQVLLNLLNGKTSAALEIVHALLQDGASTKNILDELISLTVKGMLAIKSNKEETF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+N + ++ +K ++ ++ LR + Q L V ++Q++ + D
Sbjct: 305 LTEN-YASELAKIPEEKFYSLVQAANKALNDLRYTNQQQIPLDVFVVQVTQAPVKAD 360
>gi|380031696|ref|YP_004888687.1| DNA-directed DNA polymerase III subunit gamma/tau [Lactobacillus
plantarum WCFS1]
gi|342240939|emb|CCC78173.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum WCFS1]
Length = 565
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 190/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 64 HHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I E+ + +D+ AL IAA + G +RDA +LDQ+ G +TL A + G V
Sbjct: 184 DRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDNTVTLDDALMVTGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L + + DT + R++++ D + I L + D+L A + ++
Sbjct: 244 TKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEMVDS 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F + D + L + +K L++ ++Q+R + H +L V ++L+
Sbjct: 304 VAMGEDDQQFEAFAKQIDAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKLA 357
>gi|325111245|ref|YP_004272313.1| DNA polymerase III subunits gamma and tau [Planctomyces
brasiliensis DSM 5305]
gi|324971513|gb|ADY62291.1| DNA polymerase III, subunits gamma and tau [Planctomyces
brasiliensis DSM 5305]
Length = 593
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 185/363 (50%), Gaps = 7/363 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++++RP FD +VGQ V ++L +AI V YLF G RG GKTS +RI A ALNC
Sbjct: 11 LARRYRPQTFDAVVGQQHVAQALRNAIRAERVAHAYLFTGARGVGKTSMARILAKALNCT 70
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ +D PC C C S+G DV E+D D + SL + + +R K++II
Sbjct: 71 NSQDGNPCNQCELCQAISTGSDVDVMEIDGASNRGIDDIRSLRANVGIRSMRTRVKMYII 130
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + +L +LE +V FV T E K+P + LSR Q++ F I+ I+
Sbjct: 131 DEVHMLTKEAFNALLKTLEEPPPNVKFVFCTTEPHKVPDTILSRCQRFDFSSIETQKISE 190
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RL I E I A+D +A ++ GS+RD++ L DQ L+ G +I + +L+G
Sbjct: 191 RLAEIAASEGIEVAPEAVDLVARRAGGSMRDSQSLFDQLLAFGGARIEAADVNQLLGTAG 250
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE-- 593
D LL+L++ A S ++ + + R + L+ QL N D++ C D E
Sbjct: 251 DQRLLNLIESAHSGQQADLLAEVDQASREGVQLGNLLDQLVNCYRDMMVLSCGADSLELI 310
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
K + +Q + A++ILSE + +L H + +AL+++S E+
Sbjct: 311 GVGPGAKESLQQIGQRIGLQTVMAAMQILSEAKSKLSRVSHGRALVDLALIRISMLENLD 370
Query: 650 DLN 652
DL
Sbjct: 371 DLT 373
>gi|268318939|ref|YP_003292595.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii
FI9785]
gi|262397314|emb|CAX66328.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii
FI9785]
Length = 602
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 196/357 (54%), Gaps = 3/357 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I+F++ AL+ IA ++G +RD+ +LDQ LS K+ A + G
Sbjct: 185 ARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L+ +TS + L++ ++ +L +L + +LA K ++ +
Sbjct: 245 AQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTVKGMLAIKSNKEETF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+++ + T + +K ++ + LR + Q L V ++Q++ + D
Sbjct: 305 LTEDYVSELTKIPE-EKFYSLVQAANNALNDLRYTNQQQIPLDVFVVQVTQAPVKAD 360
>gi|317968362|ref|ZP_07969752.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
CB0205]
Length = 614
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 163/292 (55%), Gaps = 3/292 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ + +L +A+ G + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDQLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 SSDHPTPEPCGSCELCTSIANGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T E ++ + LSR Q++ + +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTEPQRVLPTILSRCQRFDYRRIPLDAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I EE I AL +A ++ G +RDAE LLDQLSLL + + +EL+G V
Sbjct: 188 EQHLGWIAKEENIQITPEALHVVAQRAQGGLRDAESLLDQLSLLPGPVEPTAVWELLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAG 585
+ ELL L ++ + R L+ +P ++ +A L+ D +LAG
Sbjct: 248 PEQELLQLAQALAGAEPLGVIEAIRNLLERGREPGAVLQGMAGLLRDLVLAG 299
>gi|227888769|ref|ZP_04006574.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
gi|227850606|gb|EEJ60692.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
Length = 602
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 197/357 (55%), Gaps = 3/357 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I+F++ AL+ IA ++G +RD+ +LDQ LS K+ A + G
Sbjct: 185 ARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L+ +TS + L++ ++ +L +L + +LA + ++ +
Sbjct: 245 AQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTVKGMLAIRSNKEETF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+++ + T + +K ++ + LR + Q L V ++Q++ + +D
Sbjct: 305 LTEDYVSELTKIPE-EKFYSLVQAANNALNDLRYTNQQQIPLDVFVVQVTQAPVKVD 360
>gi|296131618|ref|YP_003638865.1| DNA polymerase III subunits gamma and tau [Thermincola potens JR]
gi|296030196|gb|ADG80964.1| DNA polymerase III, subunits gamma and tau [Thermincola potens JR]
Length = 537
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 191/366 (52%), Gaps = 9/366 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ + R+L +AI + YLF GPRGTGKT+ +++FA ALNC
Sbjct: 5 ALYREWRPQIFQDIVGQQHITRTLQNAIKANRIAHAYLFCGPRGTGKTTTAKVFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G S DV E+D+ D + L + P R++I+I
Sbjct: 65 KEGPNAEPCNQCNNCIRITDGVSMDVLEIDAASNRGIDEIRDLREKVKFSPTEGRYRIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HV+F++ T E K+P + LSR Q++ F +I G+I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPHHVIFILATTEPHKIPTTILSRCQRFDFRRIGTGEIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR +C + D+ L +A + G +RDA +LDQ ++ G+++T+ ++G V
Sbjct: 185 DRLRDVCESLQVQTDEETLTLLAKTAEGGLRDALSVLDQCIAFGGQRVTVEEVNTVLGTV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ----LISQLANLIMDIL---AGKC 587
+ L ++D ++ D+++ + +++ D Q + L NL++ + AG+
Sbjct: 245 DQELLFKMVDYFINKDSTSALFLVDDIVNQGKDLRQFSKDMTEHLRNLLLIQVSDHAGEL 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+ +E+ + + + R + I S TE+++R S L +A+++ +E
Sbjct: 305 IA-VTESTLQMLEEQAQKVSRNMILRLIDIFSLTEREVRWSNQPRLNLELAVIEACKAEP 363
Query: 648 SLDLND 653
D
Sbjct: 364 KYSFED 369
>gi|300769760|ref|ZP_07079642.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300492668|gb|EFK27854.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 569
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 202/391 (51%), Gaps = 15/391 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 64 HHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I E+ + +D+ AL IAA + G +RDA +LDQ+ G +TL A + G V
Sbjct: 184 DRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDNTVTLDDALMVTGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L + + DT + R++++ D + I L + D+L A + ++
Sbjct: 244 TKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEMVDS 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ + F + D + L + +K L++ ++Q+R + H +L V ++L+ +
Sbjct: 304 VAMGEDDQQFEAFAKQIDAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKLAQLDGQA 363
Query: 650 DLNDSKLCLRYAHDKDGDSHCTISPRDSFKH 680
+ + + + T++P+D H
Sbjct: 364 AVQPAVQPV---------AAATVNPKDPTVH 385
>gi|308179718|ref|YP_003923846.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|308045209|gb|ADN97752.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 565
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 190/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 64 HHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I E+ + +D+ AL IAA + G +RDA +LDQ+ G +TL A + G V
Sbjct: 184 DRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDNTVTLDDALMVTGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L + + DT + R++++ D + I L + D+L A + ++
Sbjct: 244 TKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEMVDS 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F + D + L + +K L++ ++Q+R + H +L V ++L+
Sbjct: 304 VAMGEDDQQFEAFAKQIDAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKLA 357
>gi|422701044|ref|ZP_16758885.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1342]
gi|315170423|gb|EFU14440.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1342]
Length = 586
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/480 (26%), Positives = 237/480 (49%), Gaps = 34/480 (7%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTV 360
Query: 647 SSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLES 706
N + ++DG + R + D N++G L K L
Sbjct: 361 QPNKHNTPETA-----NQDGSAE-------------RNPELADLQNQIGQL---KKELAE 399
Query: 707 IWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTL 766
+ K ++++ + R Q SS V L R ++ + W+ + TL
Sbjct: 400 LKKHGVAAKEADAPRQQARPQAPKSSFRVPTERVYQVLNEATRTHLMNVKNVWEDLLQTL 459
>gi|418324059|ref|ZP_12935311.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
pettenkoferi VCU012]
gi|365227717|gb|EHM68906.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
pettenkoferi VCU012]
Length = 580
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 184/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP FD++VGQ+ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQSFDDVVGQSHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 ERSTDGEPCNECPICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H VF++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPSHAVFILATTEPHKIPPTIISRAQRFDFKAIGHDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
RLR + + ++++ AALDFIA S G +RDA ++DQ G +TL A ++ G V
Sbjct: 185 DRLRYVAESQELDYEDAALDFIAKASEGGMRDALSIMDQAIAFGDDHLTLQDALDVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++ + L SD + + + +LI+ + + D + K S+
Sbjct: 245 DEESINRLFKEVAESDVRAAFETYHQFVADGKEVNRLINDMIYFVRDTIMAK----TSDT 300
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
N+ D+ L + + ++++T +R S +Q V L++++
Sbjct: 301 HFNYTA--LENFDLDTLYKMIDVINDTLVSIRFSVNQNVHFEVLLVKMA 347
>gi|345016500|ref|YP_004818853.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344031843|gb|AEM77569.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 544
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 196/373 (52%), Gaps = 8/373 (2%)
Query: 284 NNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKT 343
NNE+ + SL +K+RP F E+VGQ +V++L + I + YLF G RGTGKT
Sbjct: 19 NNEVLNMYQ---SLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKT 75
Query: 344 SASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF 403
S ++IFA A+NCL + +PC C C ++ + DV E+D+ N + V L +S
Sbjct: 76 SVAKIFAKAVNCLKNTEGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVI 135
Query: 404 LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQK 463
P +++K++IIDE +L + +L +LE HV+F++ T E DKLP + LSR Q+
Sbjct: 136 YAPSQAKYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQR 195
Query: 464 YHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKI 522
+ F +I IA L RIC + I ++ L IA NGS+RDA LL+Q S I
Sbjct: 196 FDFKRIPTRLIAQNLDRICNDSGIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEGLI 255
Query: 523 TLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI 582
T E++G+ +D+ L LLD + D + ++ + +++ ID + L ++ D+
Sbjct: 256 TYEDVCEMLGVANDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDM 315
Query: 583 L----AGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVA 638
+ G+ L++ + + L+ AL+ + +K++R + T L V
Sbjct: 316 VLYKTGGEELKEILYSDVETVKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVT 375
Query: 639 LLQLSSSESSLDL 651
+L+L E S D+
Sbjct: 376 ILRLIKPEISYDM 388
>gi|331092483|ref|ZP_08341306.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400986|gb|EGG80586.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 516
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/355 (32%), Positives = 189/355 (53%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ FD++ GQ+ +V +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPSEFDDVKGQDHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
ED PCG C C + G S +V E+D+ N D + + + P ++K++I
Sbjct: 65 QHTEDGSPCGECEMCRSIALGASMNVIEIDAASNNGVDNIREIREEVAYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+FV+ T E K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFVLATTEAHKIPITILSRCQRYDFKRISIDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
RLR + EE + ++ A+ ++A ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 DRLRELMTEENVEVEEKAIRYVAKMADGSMRDALSLLDQCIAFYLGQKLTYDHVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V D LL L D + EL+ + Q+++ + ++L K +E+
Sbjct: 245 VDTDVFSRLLRQILKRDVPAVLKSVEELVMQGRELTQMVNDFTWYLRNLLLAKTSDNMEE 304
Query: 591 CSEARKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + EA+M + L R ++I S+ Q++ + + L V L++L
Sbjct: 305 VLDVSSENLQQLKEEAEMIEVDILLRYIRIFSDLSNQIKYAVQKRILLEVTLIKL 359
>gi|345880805|ref|ZP_08832345.1| hypothetical protein HMPREF9431_01009 [Prevotella oulorum F0390]
gi|343921844|gb|EGV32554.1| hypothetical protein HMPREF9431_01009 [Prevotella oulorum F0390]
Length = 600
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 194/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC +
Sbjct: 8 ARKYRPMSFDAVVGQESLTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCET 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
E + C +C C F+ GRS ++ E+D+ N + + SLM+ +PP R+K+FII
Sbjct: 68 PTEAGEACNVCESCKAFNEGRSYNIFELDAASNNSVENIKSLMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ +I +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIVA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L+++ +E + F++ AL IA K++G +RDA + DQ S IT E + ++
Sbjct: 188 HLKQVAAKENVAFEEEALAVIAEKADGGMRDALSIFDQTASFCQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL-----AGKCLED 590
+ +LD AL + ++ ++ ++R D I+ LA I ++L A L +
Sbjct: 248 AENYFKVLDYALENKVTDVMVLLNNVLRKGFDGGHFINGLAQHIRNVLMAHDAATLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + ++ L RALK+L++ + + S ++ + + L+Q++
Sbjct: 308 VSQQQQTKYQQQAQKCPVKFLYRALKLLNQCDVNYKQSSNKRLLVELTLIQMA 360
>gi|168210522|ref|ZP_02636147.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
B str. ATCC 3626]
gi|168217757|ref|ZP_02643382.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
NCTC 8239]
gi|170711454|gb|EDT23636.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
B str. ATCC 3626]
gi|182380192|gb|EDT77671.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
NCTC 8239]
Length = 547
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D +PC C C + G + D+ E+D+ N D + ++ PP +RFK++I
Sbjct: 65 LDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +I DI
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRKDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR+I E+ I D +LD +A S+G++RD+ +LDQ +S+ K+ ++G+V
Sbjct: 185 GRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
++D L ++D + D + + EL+ + D I L NL+M + E
Sbjct: 245 TNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNPEEV 304
Query: 591 CSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
A +N ++ ++++ R ++I+ E +++ ++SK +L +A++++ E
Sbjct: 305 LDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKIE 362
>gi|403389620|ref|ZP_10931677.1| DNA polymerase III subunits gamma and tau [Clostridium sp. JC122]
Length = 542
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 193/358 (53%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++VGQN + +L +AI + YL G RGTGKTS ++IF+ A+NC
Sbjct: 5 ALYRKFRPQKFEDVVGQNHISTTLKNAIKSERIAHAYLLCGTRGTGKTSTAKIFSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C ++G + DV E+D+ N+ D + ++ PP S++K++I
Sbjct: 65 LNSQDGEPCNECEMCIKINNGTAIDVVELDAASHNKVDNIRDIIDDVQYPPQESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L L +LE +V+F++ T + KLP + LSR QK+ F +IK+ DI
Sbjct: 125 IDEVHMLSQGAVNAFLKTLEEPPSYVIFILATTDPQKLPITILSRCQKFDFKRIKNDDIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL++I + + +L I+ +G++RDA +LDQ +S+ K+ +++G++
Sbjct: 185 LRLKQITDILGVYAEDKSLKLISRICDGAMRDALSILDQAISMSNNKVEYENIVKMLGLM 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++D+L+ L D +S D V + S D I + D++ K E E
Sbjct: 245 TNDDLITLTDFIISKDIEGAVKTINNAISSGKDVNLFIKDFTKHMRDLMMVKVTESPEEV 304
Query: 595 RK------NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ + + ++++ R +KIL +TE+ + SK +L +A++++ E
Sbjct: 305 LEMSIENIELLKLQSEKLRVEEIMRYIKILQDTEENAKYSKQGRIYLELAIIKMCKFE 362
>gi|406027283|ref|YP_006726115.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri CD034]
gi|405125772|gb|AFS00533.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri CD034]
Length = 600
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 187/354 (52%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ+++ R+L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDEIVGQSIITRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 HYLKDGEPCNQCETCKAINEGSLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+QK+ F +IK DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIKPQDIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ + +D AL IA + G +RDA +LDQ +S KIT A + G V
Sbjct: 185 ERMEYILDQKKVEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDNKITYENALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+++ L + + DT + +I ++++ D + I L + DIL + E
Sbjct: 245 TNELLTTYMQQVVKKDTKSALITIQKILDEGKDASRFIEDLTSYCQDILLYQQDPGIVEE 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F + + Q + + + L+ LR + H +L V ++++
Sbjct: 305 MELGIIDDQFKALSGQISDQAIYQMINELNAISNSLRFTAHPDVYLEVLTVKIT 358
>gi|238853617|ref|ZP_04643986.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4]
gi|238833761|gb|EEQ26029.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4]
Length = 602
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 190/350 (54%), Gaps = 3/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I+F++ AL+ IA ++G +RD+ +LDQ LS K+ A ++ G
Sbjct: 185 ARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALKITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L TS L++ ++ +L +L + +L K ++ +
Sbjct: 245 AQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISLTVKGMLVVKSNKEATF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
K+ + ++ +K ++ + LR + Q L V ++Q++
Sbjct: 305 LTKD-YATELAKIPEEKFYNLVQAANTALNDLRYTNQQQIPLDVFVVQVT 353
>gi|182625401|ref|ZP_02953174.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D
str. JGS1721]
gi|177909398|gb|EDT71850.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D
str. JGS1721]
Length = 547
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D +PC C C + G + D+ E+D+ N D + ++ PP +RFK++I
Sbjct: 65 LDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +I DI
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRKDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR+I E+ I D +LD +A S+G++RD+ +LDQ +S+ K+ ++G+V
Sbjct: 185 GRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
++D L ++D + D + + EL+ + D I L NL+M + E
Sbjct: 245 TNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNPEEV 304
Query: 591 CSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
A +N ++ ++++ R ++I+ E +++ ++SK +L +A++++ E
Sbjct: 305 LDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKIE 362
>gi|436735979|ref|YP_007318107.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
gi|428267580|gb|AFZ33524.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
Length = 466
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 124/359 (34%), Positives = 189/359 (52%), Gaps = 11/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +RP ++LVGQ V +L +AI+ + YLF GPRGTGKTS +RIFA +LNC
Sbjct: 4 ALHLAYRPKTLEDLVGQPYVKATLANAITNRQIAPAYLFTGPRGTGKTSTARIFAKSLNC 63
Query: 356 LSLEDQKP----CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
L E +KP CG C+ C S S DV E+D+ N D L++ + P + R+
Sbjct: 64 L--ESKKPTINPCGQCQSCRSIESSSSLDVSEIDAASHNGVDDARELVERSSFAPVAGRY 121
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
+IFI+DEC L ++ +L +E HVVFV+ T E+ K+ + +SR+Q++ F +
Sbjct: 122 RIFILDECHQLTTQSQNALLKCIEEPPAHVVFVLCTTEVHKVLPTIISRTQRFEFRALSI 181
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
G I ++LR++ V E I AL IA NG +RDA LL Q+ LLG+ +T + E+
Sbjct: 182 GTITTQLRKVAVSEEIAIGDDALLAIARIVNGGLRDALQLLSQVRLLGEGVTANQVIEMA 241
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
G ++ ELL +++ + +T + AREL+ + P +++ L D+L +
Sbjct: 242 GGTTESELLAIVEAIAAGNTLQLLQAARELVDAGKTPTLILNSLLQTSRDLLVLQSAPKE 301
Query: 592 SEARKNFFGKHTSEADMQK-----LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
H ++ K L+ L L + E QLR S + WL V LL L S+
Sbjct: 302 QSLLTGVVSYHQLKSLAAKWSFDTLNLVLVQLHKAELQLRQSINAGVWLEVCLLNLMSA 360
>gi|257059952|ref|YP_003137840.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 8802]
gi|256590118|gb|ACV01005.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
8802]
Length = 650
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 195/358 (54%), Gaps = 10/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ D PCG C C + G + DV E+D+ D + +++ A P R+K++
Sbjct: 67 AFSDPTATPCGKCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERAQFAPVQCRYKVY 126
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 127 VIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIPLDAM 186
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L +I +E I+ Q AL +A +NG +RDAE LLDQLSLL IT +EL+G V
Sbjct: 187 VNHLSKIAQQETIDIAQDALILVAQIANGGLRDAESLLDQLSLLSGTITTDKVWELVGAV 246
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKCL---ED 590
+ +LL LL A++S+ + VI R R LM +P+ ++ LA +++L K D
Sbjct: 247 PEQDLLLLLQ-AIASNNAELVIDRCRHLMNRGREPLVVLQNLAGFYLNLLIAKTAPNRPD 305
Query: 591 CSEARKNFFGKHTSEA---DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ +EA +++ + + + L ++E QL+ + WL V LL L S
Sbjct: 306 MVAVTAPTWQALCNEAHQWNLETILQGQQRLKDSEFQLKNTTQPRLWLEVTLLSLLPS 363
>gi|424756765|ref|ZP_18184567.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
R508]
gi|402408159|gb|EJV40648.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
R508]
Length = 586
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 199/362 (54%), Gaps = 13/362 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALESLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTV 360
Query: 647 SS 648
S
Sbjct: 361 QS 362
>gi|227519437|ref|ZP_03949486.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
TX0104]
gi|424677174|ref|ZP_18114033.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV103]
gi|424679246|ref|ZP_18116074.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV116]
gi|424682440|ref|ZP_18119210.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV129]
gi|424685998|ref|ZP_18122671.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV25]
gi|424689003|ref|ZP_18125597.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV31]
gi|424692616|ref|ZP_18129099.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV37]
gi|424695893|ref|ZP_18132265.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV41]
gi|424699084|ref|ZP_18135324.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV62]
gi|424702655|ref|ZP_18138802.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV63]
gi|424705797|ref|ZP_18141819.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV65]
gi|424716056|ref|ZP_18145373.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV68]
gi|424719282|ref|ZP_18148458.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV72]
gi|424724470|ref|ZP_18153416.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV73]
gi|424726190|ref|ZP_18154864.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV81]
gi|424734599|ref|ZP_18163094.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV85]
gi|424746736|ref|ZP_18174957.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV93]
gi|227073049|gb|EEI11012.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
TX0104]
gi|402355204|gb|EJU89981.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV103]
gi|402357624|gb|EJU92329.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV116]
gi|402367473|gb|EJV01813.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV129]
gi|402368072|gb|EJV02397.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV25]
gi|402369431|gb|EJV03709.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV31]
gi|402377627|gb|EJV11524.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV37]
gi|402377813|gb|EJV11705.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV62]
gi|402379127|gb|EJV12947.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV41]
gi|402386684|gb|EJV20182.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV63]
gi|402388819|gb|EJV22244.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV68]
gi|402389227|gb|EJV22627.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV65]
gi|402395017|gb|EJV28151.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV73]
gi|402396857|gb|EJV29902.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV72]
gi|402400214|gb|EJV33053.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV81]
gi|402406944|gb|EJV39484.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV85]
gi|402409148|gb|EJV41583.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
ERV93]
Length = 586
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 199/362 (54%), Gaps = 13/362 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTV 360
Query: 647 SS 648
S
Sbjct: 361 QS 362
>gi|126652951|ref|ZP_01725093.1| DnaX [Bacillus sp. B14905]
gi|126590281|gb|EAZ84403.1| DnaX [Bacillus sp. B14905]
Length = 595
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 181/350 (51%), Gaps = 10/350 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F E+ GQ V R+L +A+ T YLF GPRGTGKTS ++IFA ALNC
Sbjct: 10 YRPQSFREMSGQAHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKALNCEHAPA 69
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
++PC C C + G DV E D+ +R + + +++ P SSR+K++IIDE
Sbjct: 70 KEPCNECATCISITDGSHPDVIEFDAASNSRVEEIRDIIEKVRFAPASSRYKVYIIDEVH 129
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H VF++ T E KLP + +SR Q++ F ++ DI R++
Sbjct: 130 MLSTSAFNALLKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLSTNDIIERMKV 189
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDEL 539
+ + + +++ L IA + G +RDA LLDQ +S G+K+ L + G +S D
Sbjct: 190 VLEDIELPYEEQGLKVIAQSAAGGMRDALSLLDQVVSFSGEKLKLEDTLLVTGSISQDVF 249
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL-------AGKCLEDCS 592
DL + + D + + +L+ DP++L L D+L + LE S
Sbjct: 250 YDLAEALKAKDVAQMLALLEQLIVDGKDPLRLSEDLITFFRDLLLLQTSDDLAELLELVS 309
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ H +M L + IL++T++++R S H +L ALL++
Sbjct: 310 PEERVLSLAHEFAPNM--LYGYIDILAKTQQEMRFSHHTKIYLETALLKM 357
>gi|58336713|ref|YP_193298.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus NCFM]
gi|227903276|ref|ZP_04021081.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus ATCC 4796]
gi|58254030|gb|AAV42267.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus NCFM]
gi|227869081|gb|EEJ76502.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus ATCC 4796]
Length = 596
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 187/352 (53%), Gaps = 2/352 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C + G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAANEGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKEDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I ++ AL+ IA ++G +RDA +LDQ LS + A ++ G
Sbjct: 185 NRMKYILDQENIKYEVKALNVIAQVADGGMRDALSILDQLLSYEKDSVNYEDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + + +L L ++ N + A+E + ++ +L ++ ++ K ED
Sbjct: 245 ARENIEKILLALLEQNSVNALKLAQESLDQGASSKNILDELIDMATKSLMVIKANEDQGA 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
F + + R + + + LR + Q L V L++ SS+
Sbjct: 305 FLTENFIEKIKDVPTDTYYRLITLANNALNDLRYTNQQQIPLKVFLVEASSN 356
>gi|110803673|ref|YP_697397.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
SM101]
gi|110684174|gb|ABG87544.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
SM101]
Length = 547
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D +PC C C + G + D+ E+D+ N D + ++ PP +RFK++I
Sbjct: 65 LDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +I DI
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRKDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR+I E+ I D +LD +A S+G++RD+ +LDQ +S+ K+ ++G+V
Sbjct: 185 GRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
++D L ++D + D + + EL+ + D I L NL+M + E
Sbjct: 245 TNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNPEEV 304
Query: 591 CSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
A +N ++ ++++ R ++I+ E +++ ++SK +L +A++++ E
Sbjct: 305 LDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKIE 362
>gi|257084256|ref|ZP_05578617.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1]
gi|256992286|gb|EEU79588.1| DNA-directed DNA polymerase III [Enterococcus faecalis Fly1]
Length = 586
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 199/362 (54%), Gaps = 13/362 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKTV 360
Query: 647 SS 648
S
Sbjct: 361 QS 362
>gi|422872634|ref|ZP_16919119.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
F262]
gi|380306460|gb|EIA18725.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
F262]
Length = 547
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPQTFNDVVGQEHITTTLKNQIINERAAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D +PC C C + G + D+ E+D+ N D + ++ PP +RFK++I
Sbjct: 65 LDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +I DI
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRKDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR+I E+ I D +LD +A S+G++RD+ +LDQ +S+ K+ ++G+V
Sbjct: 185 GRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
++D L ++D + D + + EL+ + D I L NL+M + E
Sbjct: 245 TNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNPEEV 304
Query: 591 CSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
A +N ++ ++++ R ++I+ E +++ ++SK +L +A++++ E
Sbjct: 305 LDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKIE 362
>gi|110799164|ref|YP_694518.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
ATCC 13124]
gi|422347974|ref|ZP_16428882.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
WAL-14572]
gi|110673811|gb|ABG82798.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
ATCC 13124]
gi|373223070|gb|EHP45424.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
WAL-14572]
Length = 547
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D +PC C C + G + D+ E+D+ N D + ++ PP +RFK++I
Sbjct: 65 LDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +I DI
Sbjct: 125 MDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRKDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR+I E+ I D +LD +A S+G++RD+ +LDQ +S+ K+ ++G+V
Sbjct: 185 GRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
++D L ++D + D + + EL+ + D I L NL+M + E
Sbjct: 245 TNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNPEEV 304
Query: 591 CSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
A +N ++ ++++ R ++I+ E +++ ++SK +L +A++++ E
Sbjct: 305 LDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKIE 362
>gi|403044916|ref|ZP_10900394.1| DNA polymerase III gamma and tau subunits [Staphylococcus sp. OJ82]
gi|402764980|gb|EJX19064.1| DNA polymerase III gamma and tau subunits [Staphylococcus sp. OJ82]
Length = 580
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 187/351 (53%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ V ++L +AI++ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 13 ALYRMFRPQSFEDVVGQEHVTKTLRNAIAKSKQSHAYIFSGPRGTGKTSIAKVFAKAINC 72
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G + DV E+D+ N D + ++ P S+FK++I
Sbjct: 73 LERTDGEPCNECAICKGITRGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKFKVYI 132
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SRSQ++ F I + +I
Sbjct: 133 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRSQRFDFKAISEDEIV 192
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
RL+ + + I D AAL+FIA S G +RDA ++DQ G + +TL A + G V
Sbjct: 193 ERLKFVANSQEIECDTAALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALNVTGSV 252
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC--LEDCS 592
L +LL + D + + + + +LI+ + + D + K +E
Sbjct: 253 DASALNELLKEVVQGDVKSAFSTYHQFISQGKEVNRLINDMIYFVRDTIMNKTSNVETEY 312
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A +F D+ L + + I+++T +R S +Q+ V L++++
Sbjct: 313 DALMHF--------DLDVLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKIA 355
>gi|420147664|ref|ZP_14654939.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
CECT 5714]
gi|398400811|gb|EJN54342.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
CECT 5714]
Length = 602
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 191/352 (54%), Gaps = 3/352 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I+F++ AL+ IA ++G +RD+ +LDQ LS K+ A ++ G
Sbjct: 185 ARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L TS L++ ++ +L +L + +L K ++ +
Sbjct: 245 AQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISLTVKGMLVVKSNKEATF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+ + ++ +K ++ + LR + Q L V ++Q++ +
Sbjct: 305 LTKD-YATELAKIPEEKFYNLVQAANTALNDLRYTNQQQIPLDVFVVQVTQA 355
>gi|116629039|ref|YP_814211.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC
33323]
gi|116094621|gb|ABJ59773.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC
33323]
Length = 602
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 192/352 (54%), Gaps = 3/352 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I+F++ AL+ IA ++G +RD+ +LDQ LS K+ A ++ G
Sbjct: 185 ARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L TS L++ ++ +L +L + +L K ++ +
Sbjct: 245 AQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISLTVKGMLVVKSNKEATF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K++ + ++ +K ++ + LR + Q L V ++Q++ +
Sbjct: 305 LTKDYVTE-LAKIPEEKFYNLVQAANTALNDLRYTNQQQIPLDVFVVQVTQA 355
>gi|295113711|emb|CBL32348.1| DNA polymerase III, subunits gamma and tau [Enterococcus sp. 7L76]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|422697958|ref|ZP_16755885.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1346]
gi|315173519|gb|EFU17536.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1346]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|403386173|ref|ZP_10928230.1| DNA polymerase III subunit gamma/tau [Kurthia sp. JC30]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 183/352 (51%), Gaps = 7/352 (1%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F E+ GQ V R+L +A+ T YLF GPRGTGKTS +RIFA ALNC
Sbjct: 10 YRPQTFREVSGQTHVKRTLQNALVANKTTHAYLFSGPRGTGKTSMARIFAKALNCDHAPT 69
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSA-FLPPFSSRFKIFIIDEC 419
+PC C C + G+S DV E D+ +R + + +++ P +R+KI+IIDE
Sbjct: 70 NEPCNECAHCVEINEGKSNDVFEYDAASNSRVEDMREMLEYIDHAPSNGTRYKIYIIDEV 129
Query: 420 QLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLR 479
+L + +L +LE HVVF++ T E K+P + +SR+Q++ F ++ D+ R++
Sbjct: 130 HMLSTSAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFKRLSSNDLVERMK 189
Query: 480 RICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDE 538
+ + +D+ AL IA + G +RD+ +LDQ +S +++TL A + G +S D
Sbjct: 190 VVLEDINFGYDERALKVIAQAAAGGMRDSLSMLDQVVSFSDEQVTLEDALFVTGSISQDI 249
Query: 539 LLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE----- 593
+L + LS D + + +LM D ++L + D+L + D +
Sbjct: 250 FYELAESLLSKDVAKVLAMLEQLMGEGKDAVRLSEDMITFFRDLLLIQTAPDLGDLLELA 309
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
A F M L + ILS+T++++R S H +L ALL++ S
Sbjct: 310 ASDEKFTNLAHNFSMDTLYTYIDILSKTQQEMRFSLHSKVYLETALLKMVQS 361
>gi|422729599|ref|ZP_16785999.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0012]
gi|315149916|gb|EFT93932.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0012]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|17158706|ref|NP_478217.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
gi|17134655|dbj|BAB77213.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
Length = 429
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 173/293 (59%), Gaps = 3/293 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP E++GQ +VR+L++AI+ + YLF GP+GTGKTS +RI A +LNC
Sbjct: 5 LHLKYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSLNCQ 64
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + KPCG C C ++ S DV E+D+ + + + L+ + P SRFKIF
Sbjct: 65 SSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTTQFAPVESRFKIF 124
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDEC L ++W +L ++E+ +HVVF+ T EL K+P + +SR QK+ F ++ +
Sbjct: 125 IIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPVSLV 184
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGI 533
AS L +I +E+IN +A+ +A + G +RD+ LLDQL+LLG ++IT + +EL G
Sbjct: 185 ASYLEKISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITYNWVWELSGT 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
+ + +LL + + + + + + ++ + S P + + L N + D+L K
Sbjct: 245 IPEYDLLTVCENIIKGEITGNLGILQDWIESGKQPTAIHTSLVNFLKDLLVCK 297
>gi|300362311|ref|ZP_07058487.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
JV-V03]
gi|300353302|gb|EFJ69174.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
JV-V03]
Length = 602
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 190/350 (54%), Gaps = 3/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADRGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I F++ AL+ IA ++G +RD+ +LDQ LS K+ A ++ G
Sbjct: 185 ARMTYILGQEKIGFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L +TS L++ ++ +L +L + +L K ++ +
Sbjct: 245 AQEKIEQVLLDLLKGETSEAFEIVHNLLQDGASTKNILDELISLTVKGMLVIKSNKEATF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
K+ + ++ +K ++ + LR + Q L V ++Q++
Sbjct: 305 LTKD-YAAELAKIPEEKFYNLVQAANTALNDLRYTNQQQIPLDVFVVQVT 353
>gi|256963882|ref|ZP_05568053.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704]
gi|307271831|ref|ZP_07553102.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0855]
gi|422694065|ref|ZP_16752070.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4244]
gi|256954378|gb|EEU71010.1| DNA-directed DNA polymerase III [Enterococcus faecalis HIP11704]
gi|306511709|gb|EFM80708.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0855]
gi|315148740|gb|EFT92756.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4244]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|422734530|ref|ZP_16790819.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1341]
gi|315168761|gb|EFU12778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1341]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMKEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|229544838|ref|ZP_04433563.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
TX1322]
gi|256854074|ref|ZP_05559439.1| DNA polymerase III [Enterococcus faecalis T8]
gi|422684790|ref|ZP_16743015.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4000]
gi|229310006|gb|EEN75993.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
TX1322]
gi|256711017|gb|EEU26060.1| DNA polymerase III [Enterococcus faecalis T8]
gi|315030401|gb|EFT42333.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4000]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits [Macrococcus caseolyticus
JCSC5402]
gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus
caseolyticus JCSC5402]
Length = 546
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 180/349 (51%), Gaps = 8/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FR F+E+VGQ V +L +AI + ++ YLF+GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRVFRSQSFEEVVGQKHVTTTLKNAIQKNKISHAYLFNGPRGTGKTSIAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G + DV E+D+ N D + ++ P S +K++I
Sbjct: 65 TVSTDGEPCNSCDTCVSITKGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPGESTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H VF++ T E K+P + +SR Q++ F I DIA
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAVFILATTEPHKVPATIISRCQRFDFKAISVNDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
L +C E I +D+ AL+FIA + G +RDA +LDQ G + +TL + + G V
Sbjct: 185 EHLAYVCRTEGIKYDEGALNFIATTAEGGMRDALSILDQAIAFGTETLTLEHVHSVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++ +L D ++ D + L+ + +L++ L + DI+ ++ E
Sbjct: 245 GREDFFELTDYIITHDVKEAFKQFHRLLSEGKETTRLVNDLIYFLRDIIMDYAADNKGE- 303
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + D+ L + +++T +R + + V +++LS
Sbjct: 304 ------ESIYQLDIGLLYEMIDKINDTLVSMRFAVNMNVHFEVLIVKLS 346
>gi|29377253|ref|NP_816407.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
V583]
gi|227554263|ref|ZP_03984310.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
HH22]
gi|229549105|ref|ZP_04437830.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
ATCC 29200]
gi|255971824|ref|ZP_05422410.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1]
gi|256616720|ref|ZP_05473566.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|256763401|ref|ZP_05503981.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3]
gi|256958005|ref|ZP_05562176.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5]
gi|257079943|ref|ZP_05574304.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1]
gi|257087744|ref|ZP_05582105.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6]
gi|257091016|ref|ZP_05585377.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis
CH188]
gi|294779698|ref|ZP_06745086.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
PC1.1]
gi|300861270|ref|ZP_07107357.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TUSoD Ef11]
gi|307269190|ref|ZP_07550545.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4248]
gi|307277017|ref|ZP_07558126.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2134]
gi|307288600|ref|ZP_07568582.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0109]
gi|307290217|ref|ZP_07570133.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0411]
gi|312900139|ref|ZP_07759455.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0470]
gi|312902602|ref|ZP_07761808.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0635]
gi|384514104|ref|YP_005709197.1| DNA polymerase III subunit gamma/tau DnaX [Enterococcus faecalis
OG1RF]
gi|384519569|ref|YP_005706874.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
62]
gi|397700965|ref|YP_006538753.1| DNA polymerase III, subunits gamma and tau [Enterococcus faecalis
D32]
gi|421513235|ref|ZP_15960014.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
ATCC 29212]
gi|422687210|ref|ZP_16745392.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0630]
gi|422690941|ref|ZP_16748982.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0031]
gi|422703247|ref|ZP_16761072.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1302]
gi|422710930|ref|ZP_16767865.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0027]
gi|422714866|ref|ZP_16771592.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0309A]
gi|422718006|ref|ZP_16774679.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0309B]
gi|422720179|ref|ZP_16776802.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0017]
gi|422724448|ref|ZP_16780924.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2137]
gi|422725474|ref|ZP_16781935.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0312]
gi|422731849|ref|ZP_16788197.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0645]
gi|422741404|ref|ZP_16795429.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2141]
gi|422868891|ref|ZP_16915418.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1467]
gi|424672040|ref|ZP_18109021.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
599]
gi|428767925|ref|YP_007154036.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
str. Symbioflor 1]
gi|430359096|ref|ZP_19425712.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
OG1X]
gi|430370847|ref|ZP_19429254.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
M7]
gi|29344719|gb|AAO82477.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
V583]
gi|227176623|gb|EEI57595.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
HH22]
gi|229305730|gb|EEN71726.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
ATCC 29200]
gi|255962842|gb|EET95318.1| DNA-directed DNA polymerase III [Enterococcus faecalis T1]
gi|256596247|gb|EEU15423.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|256684652|gb|EEU24347.1| DNA-directed DNA polymerase III [Enterococcus faecalis T3]
gi|256948501|gb|EEU65133.1| DNA-directed DNA polymerase III [Enterococcus faecalis DS5]
gi|256987973|gb|EEU75275.1| DNA-directed DNA polymerase III [Enterococcus faecalis JH1]
gi|256995774|gb|EEU83076.1| DNA-directed DNA polymerase III [Enterococcus faecalis D6]
gi|256999828|gb|EEU86348.1| DNA polymerase III gamma and tau subunits [Enterococcus faecalis
CH188]
gi|294453189|gb|EFG21603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
PC1.1]
gi|300850309|gb|EFK78059.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TUSoD Ef11]
gi|306498638|gb|EFM68139.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0411]
gi|306500435|gb|EFM69770.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0109]
gi|306506312|gb|EFM75473.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2134]
gi|306514482|gb|EFM83042.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX4248]
gi|310634272|gb|EFQ17555.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0635]
gi|311292774|gb|EFQ71330.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0470]
gi|315025455|gb|EFT37387.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2137]
gi|315032629|gb|EFT44561.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0017]
gi|315035150|gb|EFT47082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0027]
gi|315143828|gb|EFT87844.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX2141]
gi|315154258|gb|EFT98274.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0031]
gi|315159651|gb|EFU03668.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0312]
gi|315162057|gb|EFU06074.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0645]
gi|315165347|gb|EFU09364.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1302]
gi|315573755|gb|EFU85946.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0309B]
gi|315579587|gb|EFU91778.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0630]
gi|315580330|gb|EFU92521.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0309A]
gi|323481702|gb|ADX81141.1| DNA polymerase III, subunits gamma and tau [Enterococcus faecalis
62]
gi|327535993|gb|AEA94827.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus faecalis
OG1RF]
gi|329572917|gb|EGG54538.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX1467]
gi|397337604|gb|AFO45276.1| DNA polymerase III, subunits gamma and tau [Enterococcus faecalis
D32]
gi|401673609|gb|EJS79988.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
ATCC 29212]
gi|402357085|gb|EJU91799.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
599]
gi|427186098|emb|CCO73322.1| DNA polymerase III, gamma and tau subunits [Enterococcus faecalis
str. Symbioflor 1]
gi|429513451|gb|ELA03032.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
OG1X]
gi|429515212|gb|ELA04730.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
M7]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|312951953|ref|ZP_07770841.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0102]
gi|310630142|gb|EFQ13425.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0102]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|257421610|ref|ZP_05598600.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
X98]
gi|422707281|ref|ZP_16764978.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0043]
gi|257163434|gb|EEU93394.1| DNA polymerase III subunits gamma and tau [Enterococcus faecalis
X98]
gi|315155639|gb|EFT99655.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
TX0043]
Length = 586
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|307566326|ref|ZP_07628765.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS
21A-A]
gi|307344903|gb|EFN90301.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS
21A-A]
Length = 590
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 194/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP F +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPATFSSVVGQSSLTTTLKNAVISGKLAHAYLFCGPRGVGKTTTARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ D + C C C F+ GRS ++ E+D+ N + + LM+ +PP ++K+FII
Sbjct: 68 PVSDGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKELMEQTRIPPQIGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + + L +LE ++F++ T E K+ + LSR Q Y F ++ DI
Sbjct: 128 DEVHMLSSQAFNAFLKTLEEPPAQIIFILATTEKHKILPTILSRCQIYDFERMSVADIIK 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L ++ +E I ++++AL+ IA K++G +RDA + DQ++ + KIT E + ++
Sbjct: 188 HLEKVAEKENITYEESALNVIAEKADGGMRDALSIFDQVASFSQGKITYQKVTEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D D++DL+L + S ++ + DP ++I+ LA + +IL K L +
Sbjct: 248 IDNYFDIIDLSLQNKVSEIMLLLNNAINRGFDPGRIINGLAAHVRNILMAKDISTLPLIE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ + + S+ ++ L +AL+ +++ + R S ++ + L++++
Sbjct: 308 VSKQQMERYKNQASKCPVKFLYKALEKMNQCDINYRQSSNKRLLAEITLIEVA 360
>gi|257416948|ref|ZP_05593942.1| DNA-directed DNA polymerase III [Enterococcus faecalis ARO1/DG]
gi|257158776|gb|EEU88736.1| DNA-directed DNA polymerase III [Enterococcus faecalis ARO1/DG]
Length = 586
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|429725024|ref|ZP_19259885.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 473 str. F0040]
gi|429151486|gb|EKX94354.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 473 str. F0040]
Length = 631
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ+ + +L +AI+ G + YLF GPRG GKT+++RIFA +NCL+
Sbjct: 8 ARKYRPTNFNSVVGQSALTTTLKNAIATGKLAHAYLFCGPRGVGKTTSARIFAKTINCLT 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
E + C C C F+ GRS ++ E+D+ N D + L+ +PP R+K+FII
Sbjct: 68 PNESGEACDHCESCVAFNEGRSYNIHELDAASNNSVDDIRELIDQVQIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE H +F++ T E K+ + LSR Q Y F +++ GD
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPAHAIFILATTEKHKILPTILSRCQIYDFNRMEVGDTVR 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L+ + +E I +++AAL+ IA K++G +RDA + DQ+ S G IT + + ++
Sbjct: 188 HLQHVADQEGIQYEEAALNVIARKADGGMRDALSIFDQVASFTGGNITYQATIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D + D L + ++++ E++ + +S LA D+L + L +
Sbjct: 248 YDYYFAVTDHLLKGEIPESMMKLNEILSKGFEGGHFMSGLAAHFRDLLVSRDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E + + + + L RALK+ ++ + R + ++ + + L+Q++
Sbjct: 308 VAETVRQQYAEQAQRCSPRFLYRALKLCNDCDMAYRAAPNKRLLVELTLIQVA 360
>gi|399924660|ref|ZP_10782018.1| DNA polymerase III subunits gamma and tau [Peptoniphilus rhinitidis
1-13]
Length = 557
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 194/371 (52%), Gaps = 14/371 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDEL GQ+ VV SL + + ++ Y+F G RGTGKTSA++I + A+NC
Sbjct: 4 ALYRKYRSKTFDELYGQDAVVASLKNQVKNNEISHAYIFQGTRGTGKTSAAKILSRAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D PC C C DV E+D+ N D + L + PP S ++K++I
Sbjct: 64 LNPIDGNPCNECENCKKILKESVLDVVEMDAASNNGVDDIRELKEKVIYPPQSLKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L LE +H++F++ T E++K+P + LSRSQK++F +I DI
Sbjct: 124 IDEVHMLSKGAFNALLKVLEEPPKHLIFILATTEIEKIPATILSRSQKFNFKRISIEDIE 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK---ITLSLAYELIG 532
L+RI E D+ +A S+G++RDA +LDQ LL KK I + A E++G
Sbjct: 184 RNLKRITELEGKTCDEEVFTLLAKNSDGAMRDAISILDQ--LLTKKTDHIKIEDAMEVLG 241
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS 592
I S L +L + + SN++ E+ R +D L QL D+L K L D
Sbjct: 242 ISSSKLLFELSKFLIERNISNSLFTIDEIYREGVDFTTLSGQLLEHFRDLLLVKTLSDPK 301
Query: 593 E----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + F + ++ D++ L ++IL +++ + ++ + +++S +
Sbjct: 302 KIVYTTYLDEFKELATKVDLEDLLIIIEILKNLSNEIKYADNKR-----VVFEMNSVKVC 356
Query: 649 LDLNDSKLCLR 659
+ LCLR
Sbjct: 357 NRVTKDDLCLR 367
>gi|257420166|ref|ZP_05597160.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11]
gi|257161994|gb|EEU91954.1| DNA-directed DNA polymerase III [Enterococcus faecalis T11]
Length = 586
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|257081660|ref|ZP_05576021.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol]
gi|256989690|gb|EEU76992.1| DNA-directed DNA polymerase III [Enterococcus faecalis E1Sol]
Length = 586
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|389576439|ref|ZP_10166467.1| DNA polymerase III, subunit gamma/tau [Eubacterium cellulosolvens
6]
gi|389311924|gb|EIM56857.1| DNA polymerase III, subunit gamma/tau [Eubacterium cellulosolvens
6]
Length = 542
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 198/367 (53%), Gaps = 11/367 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+E+ GQ+ +V++L + + + YLF G RGTGKT+ +++FA A+NC
Sbjct: 5 ALYRKFRPTTFEEVKGQDHIVKTLKNQLRANRIGHAYLFCGTRGTGKTTIAKVFARAVNC 64
Query: 356 L-SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
LED PC C C G S +V E+D+ N D + + + P ++K++
Sbjct: 65 EHPLEDGSPCNECETCRGILKGTSNNVIEIDAASNNGVDNIREIREEVGYRPTQGKYKVY 124
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE ++V+F++ T E++K+P + LSR Q+Y+F +I I
Sbjct: 125 IIDEVHMLSTGAFNALLKTLEEPPEYVIFILATTEINKIPVTILSRCQRYNFHRITIDTI 184
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIG 532
A RLR + E + + A+ ++A ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 AGRLRELLTRENVEAEDRAVRYVAKTADGSMRDALSLLDQCIAFYLGEKLTYEKVLEVLG 244
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGKCL 588
V D LL + D S++V +++R + Q ++ L NL++ + + L
Sbjct: 245 TVDTDVFSRLLRCVIGGDASSSVRILGDMVREGKEMGQFVTDFIWYLRNLML-VQNSEDL 303
Query: 589 EDCSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
ED + + E+ M + L R ++ILS+ QLR + + + AL++L
Sbjct: 304 EDVLDVSTENLEQLREESKMIDSEVLMRYIRILSDLSGQLRFATQKQILVESALIRLCRP 363
Query: 646 ESSLDLN 652
+ DL+
Sbjct: 364 QMDTDLS 370
>gi|241889703|ref|ZP_04777001.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC
10379]
gi|241863325|gb|EER67709.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC
10379]
Length = 569
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 220/429 (51%), Gaps = 38/429 (8%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++VGQN +V L +AI + ++ YLF+G RGTGKTS ++IFA +N
Sbjct: 4 ALYRKYRPQTFNDIVGQNHIVSVLKNAIDKDQISHAYLFYGSRGTGKTSIAKIFANEVNG 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ ++ D+ E+D+ N D V + ++ P ++K++I
Sbjct: 64 NEIYQKENV---------------DIIEIDAASNNGVDEVRDIKEAIKFLPTEGKYKVYI 108
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E+ K+P + LSR Q++ F + +
Sbjct: 109 IDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRCQRFEFKNLSQEQLI 168
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RL+ I EE + ++AA++ IA + G +RDA +LDQ+S ++ITL+ E+ +S
Sbjct: 169 DRLKYIAKEENLVIEEAAIEKIATLAKGGLRDAISILDQVSNYAEEITLNHILEVTSSIS 228
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
+D++L+ L D + ++++ E + D L++ L N+ DI+ K L+D
Sbjct: 229 EDDILEFYRGLLQGDVTKSLLKYNEFVAQAKDTKLLLNDLINVTRDIVVYKNLKDTKHTA 288
Query: 596 KNFFGKHTSEAD---MQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLN 652
N K +E D + ++ LS+TE+ +R S +++ + ++++ S E ++ N
Sbjct: 289 YN-VEKIVTEIDSVSFDYFYKIIEYLSQTEQHIRFSTEYMSYMQICIVKICSKEEGINQN 347
Query: 653 DSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTAT 712
+S + G + T S R+ + N++ LED L K +
Sbjct: 348 NSTIG-------SGQNSMT-SSRNI-----------ELENRIKVLEDKLFKLRDEMKNIS 388
Query: 713 ELCQSNSLK 721
E QSN+L+
Sbjct: 389 ESVQSNNLQ 397
>gi|81427950|ref|YP_394949.1| DNA-directed DNA polymerase III subunit gamma/tau [Lactobacillus
sakei subsp. sakei 23K]
gi|78609591|emb|CAI54637.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
sakei subsp. sakei 23K]
Length = 571
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 190/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ + ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDDVVGQETMTQTLKNAIITKQTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC C C ++G DV E+D+ N + + + A P + +KI+I
Sbjct: 65 HYQKDGEPCNECETCRAITAGALNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E+ K+P + +SR+Q+++F +I D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEVHKVPATIISRTQRFNFKRITAADLF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ + +D AAL IA + G +RDA +LDQ LS +TL A ++ G +
Sbjct: 185 KRMAYILEQKEMTYDPAALKVIAKAAEGGMRDALSILDQVLSFSDNHVTLENALDVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++ L D + + ++++ D + + L + D+L + + A
Sbjct: 245 TEALLADYVQTIHDHAPKAALQLLQQILAEGKDAQRFVEDLIEYVRDLLMYQQAPELVMA 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F + + ++L + IL+ET++QLR + H +L VA ++L+
Sbjct: 305 NEMDLLDEHFKQLSDALSAEQLYTVIDILNETQQQLRFTNHPEIYLEVATVRLT 358
>gi|256960974|ref|ZP_05565145.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96]
gi|293384387|ref|ZP_06630270.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
R712]
gi|293388163|ref|ZP_06632686.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
S613]
gi|312908210|ref|ZP_07767180.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
DAPTO 512]
gi|312978640|ref|ZP_07790371.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
DAPTO 516]
gi|256951470|gb|EEU68102.1| DNA-directed DNA polymerase III [Enterococcus faecalis Merz96]
gi|291078286|gb|EFE15650.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
R712]
gi|291082453|gb|EFE19416.1| DNA polymerase III, gamma and tau subunit [Enterococcus faecalis
S613]
gi|310625799|gb|EFQ09082.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
DAPTO 512]
gi|311288542|gb|EFQ67098.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecalis
DAPTO 516]
Length = 586
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 198/359 (55%), Gaps = 13/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIVQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C + GR DV E+D+ N + + + A P + +K++I
Sbjct: 65 KHSQDGEPCNVCETCVAITEGRLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPLTIISRTQRFDFKRISTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ I E A+++++ AL I + G +RDA +LDQ +S +K+TL A ++ G +
Sbjct: 185 DHMAHIMQEMALDYEEQALYVIGRAAEGGMRDALSILDQTISFSDEKVTLEDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+ +++D + + V RA E + S + + L+ +L+M A K
Sbjct: 245 T----YEMMDHYIQCCVAGDVERALEGLESILGEGKEARRFLEDLLLYCRDLLMYQQAPK 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
L + + F + ++ +K+ + ++ILS+T+ ++R + + +L VA ++L+ +
Sbjct: 301 LLAEKAGTLTEAFKELATQTPAEKIYQLIQILSDTQNEIRFTNNANIYLEVATVKLAKT 359
>gi|448820290|ref|YP_007413452.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum ZJ316]
gi|448273787|gb|AGE38306.1| DNA-directed DNA polymerase III, gamma/tau subunit [Lactobacillus
plantarum ZJ316]
Length = 565
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 189/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ ++ ++L +AI + YLF GPRGTGKTSA++IFA +NC
Sbjct: 4 ALYRVWRPQRFDEIVGQQMITQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKVINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 64 HHLVDGEPCNECETCTAITKGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRTQRFDFRRITAKDSY 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I E+ + +D+ AL IAA + G +RDA +LDQ+ G +TL A + G V
Sbjct: 184 DRMVYILNEKDVTYDEKALRVIAAAAEGGMRDALSILDQVISFGDNTVTLDDALMVTGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ L + + DT + R++++ D + I L + D+L A + ++
Sbjct: 244 TKQLLANYVSEVTDHDTKPALETMRQILQEGKDANRFIEDLISYTRDVLLYQQAPEMVDS 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F + D + L + +K L++ ++Q+R + H +L V ++L+
Sbjct: 304 VAMGEDDQQFEAFAKQIDAEVLYQMVKTLNDIQQQMRFTTHPDVYLEVLTVKLA 357
>gi|326799758|ref|YP_004317577.1| DNA polymerase III subunits gamma/tau [Sphingobacterium sp. 21]
gi|326550522|gb|ADZ78907.1| DNA polymerase III, subunits gamma and tau [Sphingobacterium sp.
21]
Length = 607
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 192/362 (53%), Gaps = 7/362 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI + +LF GPRG GKT+ +RI A +NC
Sbjct: 20 ARKYRPSTFETVVGQQHITGTLKNAIKNSQLAQAFLFCGPRGVGKTTCARILAKTINCQH 79
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L + + CG C C F +G S + E+D+ N D + SL++ +PP + ++KI+II
Sbjct: 80 LSSEIEACGTCDSCKSFQNGNSFSIHELDAASNNSVDDIRSLIEQVRIPPQTGKYKIYII 139
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + + L +LE + +F++ T E K+ + LSR Q + F +IK IA
Sbjct: 140 DEVHMLSTQAFNAFLKTLEEPPAYAIFILATTEKHKILPTILSRCQIFDFNRIKVEHIAG 199
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L I +E + +DQ L IA K++G +RDA + DQ+ S K ++ + + I+
Sbjct: 200 HLANIANKEGVAYDQDGLHLIAQKADGGLRDALSMFDQIVSFSNKNVSYQAVIDNLNILD 259
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D L D S ++ N ++ E++ + D IS LA+ ++L GK L +
Sbjct: 260 YDYYFKLTDAIFSENSVNALLVFDEVLSNGFDGSHFISGLASHFRNLLVGKDASTLKLLE 319
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
SE + + + +A++ L AL I ++ E R SK+Q + +ALL++ S++
Sbjct: 320 VSENIRQRYLEQAQQAEVGLLLSALNIANQCEINYRTSKNQRLQVELALLKMCHIRSAIQ 379
Query: 651 LN 652
N
Sbjct: 380 FN 381
>gi|452993956|emb|CCQ94494.1| DNA polymerase III, gamma and tau subunits [Clostridium ultunense
Esp]
Length = 537
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 136/505 (26%), Positives = 259/505 (51%), Gaps = 24/505 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FDE++GQ + +L + I +G + YLF G +GTGKTS ++IF+ A+NC
Sbjct: 4 ALYRQYRPKTFDEVLGQEHITTTLKNQIQKGNIGHAYLFSGTKGTGKTSTAKIFSRAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ + PC C C D+ E+D+ N D + L PP +++KI+I
Sbjct: 64 LNPVEGNPCNECEICKGILDESIMDIIEMDAASNNSVDDIRELRDKVVYPPARAKYKIYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L + +L +LE +H++F++ T E+++LP++ LSR Q++ F +I + DI
Sbjct: 124 VDEVHMLSKGAFNALLKTLEEPPKHLIFILATTEMERLPQTILSRCQRFDFKRILNKDIV 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ + +IC E + ++ AL IA S+G++RDA LLDQ LS +K+T A +++GI
Sbjct: 184 ANMDKICNELNVPVEEKALRLIARNSDGAMRDALSLLDQCLSYKDEKLTYEDALDILGIA 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ D L ++D + N + + E+++ D Q I L ++L K +
Sbjct: 244 NTDLLFSIVDDIQKKNLENLLFKIDEIIQQGKDINQFIKDLIYHFRNLLIVKTSKSSADI 303
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-- 646
D E + + + ++ + ++L +L+++E + + + L +A ++L + E
Sbjct: 304 LDMDEETVSMYIDQSQNIALEFILKSLDVLNKSENEAKWATQPRIILEMAAIKLVNLEEQ 363
Query: 647 SSLDLNDSKL--CLRYAHDKDGDSHCT-ISPRDSFKHLVRGSCVGDKA-NKLGALEDYK- 701
+SL+ KL + K + T ++ + K R + K + L+D K
Sbjct: 364 ASLEERVKKLETIINSGEIKINEPAVTKVAEKPKRKLEKRENVEKPKVIEPVQILDDGKE 423
Query: 702 ---GTLESIWKTATELCQSNSLKT--FLRKQGKLSSLHVNHGLAVAELEFH--HRDYVSR 754
T++ W E+ + N+++T FL K+G+L S +N+ L++ + + H + + R
Sbjct: 424 LSFKTIKKEWGKILEIVRENNIRTHAFL-KEGRLVSF-LNNNLSIGYKDGYGIHMEAMER 481
Query: 755 AEKSWKLIASTLQSVLGCNVEIRLL 779
+ +L+ + S N+ I +
Sbjct: 482 P-NNKELVKRIVSSYFNKNININFI 505
>gi|320159544|ref|YP_004172768.1| DNA polymerase III subunits gamma and tau [Anaerolinea thermophila
UNI-1]
gi|319993397|dbj|BAJ62168.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila
UNI-1]
Length = 553
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 192/358 (53%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP ++++VGQ+ ++++L +A+ G V YLF GPRGTGKT+ +R+ A A+NC
Sbjct: 4 ALYRKWRPRLWEQVVGQDHIIQTLRNAVRTGRVGHAYLFAGPRGTGKTTTARLLAKAVNC 63
Query: 356 LSLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
L ED ++PC C C + GR D+ E+D+ + V L P R+K+
Sbjct: 64 LE-EDPAKRPCDQCAHCIAVNEGRFLDLIEIDAASNTSVEDVRDLRDKINFAPSQGRYKV 122
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
+IIDE +L + +L +LE H +F++ T E+ K+P + LSR Q++ F ++
Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPAHAIFILATTEVHKIPATVLSRCQRHEFRRVPVQQ 182
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
IA+ LR+ E+ + D+ AL IA ++ GS RDA +LDQLS G+++TL + ++G
Sbjct: 183 IAALLRQKAAEDGLAVDEDALLMIARQATGSFRDAISILDQLSSTGERVTLEMVQSVLGT 242
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK----CLE 589
+ + + L+D L+ + + + ++ + DP Q Q+ + + +L + L
Sbjct: 243 AAGEPIRLLVDAILARNAAQGLQIIQQTLDGGADPRQFARQVVDYLRGLLLVRMNNAALV 302
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
D + + ++ +L +++ + + R + H L +AL++ + +S
Sbjct: 303 DATAETRAQMAAQAGSFEVDRLVEVIRLFNTAATEARTAVHPGLGLELALVEATLEKS 360
>gi|340350868|ref|ZP_08673842.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella nigrescens
ATCC 33563]
gi|339607245|gb|EGQ12195.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella nigrescens
ATCC 33563]
Length = 594
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 193/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F +VGQ + +L++A+ + YLF GPRG GKT+ +RIFA +NC
Sbjct: 8 ARKYRPMSFASVVGQQALTTTLMNAVKSKRLAHAYLFCGPRGVGKTTCARIFAKTINCEH 67
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
DQ + C C C F+ GRS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 68 PTDQGEACNECESCRAFNEGRSYNIFELDAASNNSVENIKTLMEQTRIPPQIGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ I +
Sbjct: 128 DEVHMLSSSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVPGIIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E I +++AAL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKAVAEKEGIAYEEAALNVIAEKADGGMRDALSIFDQAASFSQGNITYRKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D +++DLA+ + ++ ++ D LI+ LA+ + ++L K L +
Sbjct: 248 ADNYFNIMDLAVENKVPEIMVLLNNVINKGFDGGNLINGLASHVRNVLMAKDPQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + ++ Q L +AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 TSDEQRQRYRQQAAKCPTQFLYKALEIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|281420656|ref|ZP_06251655.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
18205]
gi|281405429|gb|EFB36109.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
18205]
Length = 638
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 188/352 (53%), Gaps = 7/352 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
ED + C C C F+ RS ++ E+D+ N D++ LM+ +PP ++K+FII
Sbjct: 68 PREDGEACNECESCRAFNEQRSYNIFELDAASNNGVDQIKVLMEQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE QHV+F++ T E K+ + LSR Q Y F ++ + +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILSRCQIYDFERMTVANTIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I +++ AL IA K++G +RDA + DQ S IT E + ++
Sbjct: 188 HLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFCMGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D L+DLAL + + ++ ++ D +I LA + +++ K L +
Sbjct: 248 SDNYFRLVDLALENKVAEMMVTLDGILNRGFDGGNMIQGLAQHVRNVMMAKDPQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
S+ +K F +A L +AL+++++ + R S ++ + + L+Q+
Sbjct: 308 TSDDQKAKFQAQAQKAPTPFLYKALELMNQCDIHYRASSNKRLLVELTLIQI 359
>gi|302390663|ref|YP_003826484.1| DNA polymerase III subunits gamma and tau [Thermosediminibacter
oceani DSM 16646]
gi|302201291|gb|ADL08861.1| DNA polymerase III, subunits gamma and tau [Thermosediminibacter
oceani DSM 16646]
Length = 571
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 184/364 (50%), Gaps = 20/364 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FDE+VGQ +VR+L + I G + YLF G RGTGKTS +R+FA ALNC
Sbjct: 5 ALYRRYRPRDFDEIVGQEAIVRTLKNQIRTGKIGHAYLFCGMRGTGKTSTARVFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC CR C + G DV E+D+ D + +L +S PP R++++I
Sbjct: 65 EQGPTDTPCNRCRNCLAINEGGMIDVIEMDAASNRGIDDIRTLRESVNFPPSEGRYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +HVVF++ T E +KLP + LSR ++ F +++ ++
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPNKLPSTILSRCMRFDFRRVQTRELV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
S L+RI E + + AL IA S GS+RDA LLD+ L+ G K+T A L G V
Sbjct: 185 SHLKRISAENGVEAEDKALALIARSSQGSMRDALSLLDKALAFGGDKLTYRDALSLFGAV 244
Query: 535 SDDELLD------------LLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI 582
DD + +LD+ V ++L+R D M L L++ I
Sbjct: 245 GDDLFFEISRAVKQRAPGRILDI-----IEEVVGLGKDLLRFTDDLMGFYRNL--LMVSI 297
Query: 583 LAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
A + L D ++ +++ L +L +R + T L A+++L
Sbjct: 298 GADRNLVDVTDEEYGELEALAKSYSREEILNILDLLKTASNDVRWASQPRTVLEAAMVKL 357
Query: 643 SSSE 646
+ E
Sbjct: 358 ALPE 361
>gi|377832131|ref|ZP_09815095.1| DNA polymerase III, subunit gamma and tau [Lactobacillus mucosae
LM1]
gi|377554138|gb|EHT15853.1| DNA polymerase III, subunit gamma and tau [Lactobacillus mucosae
LM1]
Length = 578
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 191/358 (53%), Gaps = 14/358 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ VV ++L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDEIVGQQVVTQTLKNAIITKQISHAYLFAGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC C C ++G+ DV E+D+ N + + + A P + +K++I
Sbjct: 65 HHRQDGEPCNECEICRAITNGQLGDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR Q++ F +I D
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISAQDAF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I ++ ++++ AL IA + G +RDA +LDQ LS ++ L A + G V
Sbjct: 185 ERMQYILDQKHVDYENDALWVIANAAEGGMRDALSILDQVLSFSDNQVKLDDALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L D S ++ + +E++ D + I L + I D+L L S
Sbjct: 245 TKQLLKKYFDETTSHQSAAALHTMKEILDQGKDGQRFIEDLISFIRDVL----LYQESPQ 300
Query: 595 RKNFFGKHTSEADMQKLSRA---------LKILSETEKQLRMSKHQTTWLTVALLQLS 643
N G EAD Q+LS+A + L+E ++++R + H +L V ++LS
Sbjct: 301 LVNVAGSGLKEADFQQLSQAASADELYQMIDELNEIQEEMRFTTHPDVYLEVLTVKLS 358
>gi|297543594|ref|YP_003675896.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296841369|gb|ADH59885.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 516
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 192/361 (53%), Gaps = 5/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E+VGQ +V++L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAYLFTGTRGTGKTSIAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ + +PC C C ++ + DV E+D+ N + V L +S P +++K++I
Sbjct: 64 LNNTEGEPCNSCDICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E DKLP + LSR Q++ F +I IA
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRLIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L RIC + I + L IA NGS+RDA LL+Q +S IT E++G+
Sbjct: 184 QNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKEGFITYEDVCEMLGVA 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ L LLD + D + ++ + +++ ID + L ++ D++ G+ L++
Sbjct: 244 NDEMLFSLLDYINAKDVAASLKQLDKILSYGIDLGNFLKSLTYILRDMVLYKTGGEELKE 303
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+ + L+ AL+ + +++++ + T L + +L+L E S D
Sbjct: 304 ILYSNAETIKEKVQNFGTAFLTNALEKFTNLQREIKYAIAPLTLLEITILRLIKPEISYD 363
Query: 651 L 651
+
Sbjct: 364 M 364
>gi|126658850|ref|ZP_01729993.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110]
gi|126619800|gb|EAZ90526.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110]
Length = 692
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 240/501 (47%), Gaps = 17/501 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 13 LHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCL 72
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
++E PCG C C + G + DV E+D+ D + +++ + P R+K++
Sbjct: 73 AVEVPTAAPCGQCEVCRAITRGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 132
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE + V+FV+ T + ++ + LSR Q++ + +I +
Sbjct: 133 VIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILSRCQRFDYRRIPLEAM 192
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L I +E I + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 193 VNHLTIIAQKENIEIETEALILVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLVGAV 252
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKCL---ED 590
+ +LL LL A++S+ VI + R+LM +P+ ++ LA +++L K D
Sbjct: 253 PEKDLLSLLQ-AINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIAKTAPTRSD 311
Query: 591 CSEARKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+ SEA K + R + L E+E QL+ + WL V LL L
Sbjct: 312 LVAVTSTTWDDLCSEAKHWKTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLSLLPDAC 371
Query: 648 SLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESI 707
+ ++ + + +S T P+ + + D+ L + L I
Sbjct: 372 TPEVIIQSSNISTQTKNNNESKLTNLPQQKPQAKIVEKQFQDQPKALYKPNETITELSEI 431
Query: 708 WKTATELCQSNSLKTFLRKQGKLSS-------LHVNHGLAVAELEFHHRDYVSRAEKSWK 760
+ + L+K LSS +N+ VA + + + A+
Sbjct: 432 LINNDDTNLEEMWQLVLKKLPLLSSALIKQHGYLINYKNTVATVGIKSKQLLKAAQDKLP 491
Query: 761 LIASTLQSVLGCNVEIRLLCA 781
I S Q+V+G V++ L A
Sbjct: 492 QIESAFQAVVGHKVKVNLQVA 512
>gi|445112454|ref|ZP_21377102.1| DNA polymerase III, subunit gamma and tau [Prevotella nigrescens
F0103]
gi|444841678|gb|ELX68692.1| DNA polymerase III, subunit gamma and tau [Prevotella nigrescens
F0103]
Length = 594
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 193/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F +VGQ + +L++A+ + YLF GPRG GKT+ +RIFA +NC
Sbjct: 8 ARKYRPMSFASVVGQQALTTTLMNAVKSKRLAHAYLFCGPRGVGKTTCARIFAKTINCEH 67
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
DQ + C C C F+ GRS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 68 PTDQGEACNECESCRAFNEGRSYNIFELDAASNNSVENIKTLMEQTRIPPQIGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ I +
Sbjct: 128 DEVHMLSSSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVPGIIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E I +++AAL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKAVAEKEGIAYEEAALNVIAEKADGGMRDALSIFDQAASFSQGNITYRKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D +++DLA+ + ++ ++ D LI+ LA+ + ++L K L +
Sbjct: 248 ADNYFNIMDLAVENKVPEIMVLLNNVINKGFDGGNLINGLASHVRNVLMAKDPQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + ++ Q L +AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 TSDEQRQRYRQQAAKCPTQFLYKALEIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|342214108|ref|ZP_08706816.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 780 str. F0422]
gi|341595793|gb|EGS38432.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 780 str. F0422]
Length = 764
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 172/333 (51%), Gaps = 6/333 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ+ V +L AI V YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRWRPKQFTDVVGQHHVSDTLQRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PCG C C G++ DV E+D+ D V +L + P K+FI
Sbjct: 65 EQGPTDTPCGQCESCQQMLQGQALDVIEIDAASNRGIDEVRALREQVNFLPVVGHKKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E W +L ++E HV+F+ T E +KLP + LSR Q+Y F +I DI
Sbjct: 125 IDEAHMLTNEAWNALLKTIEEPPSHVMFIFATTESEKLPVTILSRCQRYTFRRITAKDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS-LLGKKITLSLAYELIGIV 534
+ L + E I+ D AA IA ++G +RDA +LDQ S + + IT L +IG+V
Sbjct: 185 AHLLHVAKESNISLDPAAAQVIAVHADGGLRDALSILDQCSGMTSEMITAPLVETMIGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
S +LD++D+ + + + + E ++ D Q+++ L + ++ K L + E
Sbjct: 245 SKSWVLDMVDILKAGNGAALLQAVDEALQMGRDARQIVTALVEHLRAMIVAKVLPEAEEL 304
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETE 622
K + M+++ R + +L +
Sbjct: 305 LAYDTHKERLLAQANALSMEEIGRYINVLQTVQ 337
>gi|365853230|ref|ZP_09393518.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
parafarraginis F0439]
gi|363712986|gb|EHL96646.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
parafarraginis F0439]
Length = 599
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 192/354 (54%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE+VGQ+++ ++L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 14 ALYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAVNC 73
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + P + +K++I
Sbjct: 74 HYLKDGEPCNECETCRAINEGSLSDVIEIDAASNNGVEEIRDIRDKVKYAPTKADYKVYI 133
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+QK+ F +I+ DI
Sbjct: 134 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIRPQDIL 193
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ I++D AL IA + G +RDA +LDQ +S ++T A + G V
Sbjct: 194 ERMAYILKQKHIDYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDQVTYENALLVTGSV 253
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+++ L ++ + DT + +I ++++ D + + L + DIL + E
Sbjct: 254 TNELLTTYVEQVIQKDTKSALITIQKILDDGKDASRFVEDLTSYCQDILLYQQDPQIVEQ 313
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + F + TS+ ++ + + L++ LR + H +L V ++++
Sbjct: 314 MELGVVDDKFKQLTSQISDDQIYQMINELNDISNSLRFTAHPDVYLQVLTVKIT 367
>gi|340346161|ref|ZP_08669288.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella dentalis DSM
3688]
gi|433651507|ref|YP_007277886.1| DNA polymerase III, subunit gamma/tau [Prevotella dentalis DSM
3688]
gi|339612390|gb|EGQ17201.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella dentalis DSM
3688]
gi|433302040|gb|AGB27856.1| DNA polymerase III, subunit gamma/tau [Prevotella dentalis DSM
3688]
Length = 616
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 190/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP F +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA +NC
Sbjct: 8 ARKYRPMTFSSVVGQEALTTTLKNAVRSGKLAHAYLFCGPRGVGKTTCARIFAKTINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ GRS ++ E+D+ N + + +LM +PP + R+K+FII
Sbjct: 68 PTTDGEACDTCESCRSFNEGRSMNIFELDAASNNSVENIKTLMDQTLIPPQTGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+FV+ T E K+ + LSR Q Y F ++ +I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPHHVIFVLATTEKHKILPTILSRCQIYDFERMAVPEIIG 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L+ + +E I +++ AL IA K++G +RDA + DQ+ S IT E + ++
Sbjct: 188 HLKMVADKEGIGYEEEALSVIAEKADGGMRDALSIFDQVASFCQGNITYQKVLEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++DLAL++ S+ ++ L+ D LI+ LA+ + ++L + L +
Sbjct: 248 ADNYFRIIDLALANQVSDIMLLLDGLVAKGFDAGHLINGLASHVRNVLMARDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + + L +AL+IL+E + R S ++ + L++++
Sbjct: 308 ASQQQRLRYQEQAKKCPIPFLYKALRILNECDVNYRQSSNKRLLAELTLIRVA 360
>gi|166033190|ref|ZP_02236019.1| hypothetical protein DORFOR_02912 [Dorea formicigenerans ATCC
27755]
gi|166027547|gb|EDR46304.1| DNA polymerase III, subunit gamma and tau [Dorea formicigenerans
ATCC 27755]
Length = 522
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 192/357 (53%), Gaps = 10/357 (2%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +KFRPN F+++ GQ+ +VR+L + I + YLF G RGTGKT+ ++IFA A+N
Sbjct: 1 MALYRKFRPNEFEDVKGQDAIVRTLKNQIEADRIGHAYLFCGTRGTGKTTVAKIFAKAVN 60
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C D PCG C C ++G S +V E+D+ N D + + + P R+K++
Sbjct: 61 CEHPVDGSPCGECAVCKAIAAGNSMNVIEIDAASNNGVDNIREIREEVAYRPTEGRYKVY 120
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE ++V+F++ T E K+P + LSR Q+Y F +I I
Sbjct: 121 IIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPVTILSRCQRYDFKRISIETI 180
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS--LLGKKITLSLAYELIG 532
++RL+ + +E + ++ A+ +IA +GS+RDA LLDQ + +G+K+T E++G
Sbjct: 181 SARLQELINKEGWDVEEKAVRYIARMGDGSMRDALSLLDQCAAFYIGQKLTYDHVLEVLG 240
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGKCL 588
V + LL L D + V EL+ + QL + L NL++ + + +
Sbjct: 241 AVDTEVFSRLLRKILDRDVHSVVEIVDELVMQGRELSQLSADFTWYLRNLLL-VRSSDDM 299
Query: 589 EDCSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
ED + + EA M L R +++ S+ QL+ S + L VAL++L
Sbjct: 300 EDVLDVSSENLARLKEEAQMIEDDALIRYIRVFSDLTSQLKYSTQKRVMLEVALIKL 356
>gi|417644573|ref|ZP_12294554.1| DNA polymerase III, subunit gamma and tau [Staphylococcus warneri
VCU121]
gi|445060546|ref|YP_007385950.1| DNA polymerase III subunits gamma and tau [Staphylococcus warneri
SG1]
gi|330684669|gb|EGG96371.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU121]
gi|443426603|gb|AGC91506.1| DNA polymerase III subunits gamma and tau [Staphylococcus warneri
SG1]
Length = 566
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 185/351 (52%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G + DV E+D+ N D + ++ P S +K++I
Sbjct: 65 TNSTDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLEQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++ +D AL+FIA S G +RDA ++DQ G + +TL A + G V
Sbjct: 185 ERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+ L +L + D + R + + + +LI+ + + D + K E
Sbjct: 245 DEASLNELFKDVVKGDVKASFTRYHQFVTEGKEVNRLINDMIYFVRDTIMNKTSNQDVEY 304
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
A +F D+ L R + I+++T +R S +Q+ V L++L+
Sbjct: 305 DALLHF--------DLDTLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|335998168|ref|ZP_08564080.1| DNA polymerase III subunit gamma/tau [Lactobacillus ruminis
SPM0211]
gi|335348682|gb|EGM50183.1| DNA polymerase III subunit gamma/tau [Lactobacillus ruminis
SPM0211]
Length = 577
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 191/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F++LVGQ+++ ++L +A++ T YLF GPRGTGKTS +++FA ALNC
Sbjct: 5 ALYRVWRPQTFEDLVGQDMITKTLKNALATKQTTHAYLFAGPRGTGKTSCAKLFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + PC C C ++GR DV E+D+ N + + + P + +K++I
Sbjct: 65 PNQVNGDPCNECETCKAITAGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T + K+P + +SR+Q++ F +I G I
Sbjct: 125 IDEVHMLSTSAFNALLKTLEEPPANVVFILATTDPHKIPATIISRTQRFDFKRITSGAIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ +D+ AL+ IA + G +RDA +LDQ LS K+TL A + G V
Sbjct: 185 ERMEYILKQKQFEYDEQALNVIARAAEGGMRDALSILDQVLSFGDNKVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ + L+ L + +T + ++ D +L+ L N D+L A + LE
Sbjct: 245 TRENLIKYLSQVQNHETVAGLQTIHAILDEGKDSKRLLEDLINCCRDLLLYKQAPEMLEQ 304
Query: 591 CSEAR-KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F +++ + L R + L+E ++ +R S HQ+ +L V ++L+
Sbjct: 305 TGSVMIDDEFKSMAEKSNPETLYRYIDTLNEQQENMRYSMHQSVYLEVLTVKLA 358
>gi|255018249|ref|ZP_05290375.1| hypothetical protein LmonF_12021 [Listeria monocytogenes FSL
F2-515]
Length = 289
Score = 188 bits (478), Expect = 1e-44, Method: Composition-based stats.
Identities = 101/284 (35%), Positives = 159/284 (55%), Gaps = 1/284 (0%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
FRP F ++VGQ V ++L +AI + + YLF GPRGTGKTSA++IFA A+NC D
Sbjct: 1 FRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHD 60
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G DV E+D+ N + + + + P +++K++IIDE
Sbjct: 61 GEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVH 120
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE +HV+F++ T E KLP + +SR Q++ F +I DI RL+
Sbjct: 121 MLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKF 180
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIVSDDEL 539
I EE I +D+ AL +A + G +RDA LLDQ+ G +++T+ A E+ G V+ + L
Sbjct: 181 ILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLL 240
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
L+ A D + + L+ DP++L+ L D+L
Sbjct: 241 TKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL 284
>gi|325268871|ref|ZP_08135496.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis
DSM 16608]
gi|324988843|gb|EGC20801.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis
DSM 16608]
Length = 601
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 192/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C FS GRS ++ E+D+ N + + SLM +PP R+K+FII
Sbjct: 68 PTADGEACNECESCKAFSEGRSYNIFELDAASNNSVENIKSLMDQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ +I S
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIIS 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E I +++ AL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKSVAEKENIQYEEEALNVIAEKADGGMRDALSIFDQTASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++DLAL + S ++ +++ D L++ LA+ + ++L K L +
Sbjct: 248 ADNYFHIIDLALENKVSEVMVLLNDVINKGFDGGHLVNGLASHVRNVLMAKDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + ++ L AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 TSQQQRQRYQEQAQRCPVRFLYSALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|295397253|ref|ZP_06807349.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans
ATCC 11563]
gi|294974500|gb|EFG50231.1| DNA polymerase III, gamma/tau subunit DnaX [Aerococcus viridans
ATCC 11563]
Length = 631
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 187/357 (52%), Gaps = 8/357 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ V R+L +AI G + YLF GPRGTGKTSA++I + A+NC
Sbjct: 21 ALYRVWRPQTFGDIVGQEAVARTLQNAIRTGKTSHAYLFTGPRGTGKTSAAKILSKAINC 80
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N + + + P +++K++I
Sbjct: 81 PNQVDGEPCNECEICRAITDGTLPDVIEIDAASNNGVEEIRDIRDKVRYAPTEAQYKVYI 140
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I I
Sbjct: 141 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQRFDFKRISRQSIE 200
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ I F+ AL IA +NG +RDA LLDQ +S ++L + + G +
Sbjct: 201 DRMAFILDQDGIEFENGALAVIARAANGGMRDALSLLDQVISFSDGTLSLETSRLVTGAL 260
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-------C 587
S+++L++ + + + + LM D + + + + D++ K
Sbjct: 261 SEEQLVEYTEALANGQVTAALDHLHALMAGGQDAARFVEEQLVFVRDLMIAKETKADTAE 320
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ED ++ F D+ L + +K+ ET+ ++R S T +L VA +Q++S
Sbjct: 321 IEDLTQRYDEAFYSLAKTIDVNVLYKMMKVFRETQAEIRFSLQPTIYLEVATVQVAS 377
>gi|256852105|ref|ZP_05557492.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 27-2-CHN]
gi|260661325|ref|ZP_05862238.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN]
gi|256615517|gb|EEU20707.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 27-2-CHN]
gi|260547780|gb|EEX23757.1| DNA polymerase III gamma-tau [Lactobacillus jensenii 115-3-CHN]
Length = 593
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 192/351 (54%), Gaps = 3/351 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI R V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L+D +PC C C SG D+ E+D+ N D + + P ++K++I
Sbjct: 65 LNLQDGEPCNECENCKAADSGAMPDIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I ++
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKQNLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RD+ +LDQ LS +K+ A + G
Sbjct: 185 DRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + L L+ S ++ + +L++ L+S+L +L + +L K +D SE
Sbjct: 245 AREATEQLFLNLLNQKVSESLELSHKLLQDGATAKNLLSELISLATETMLVLKANKD-SE 303
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
F K ++ ++ + + +E LR + + L V L+++++
Sbjct: 304 FLTKDFTKQITDVPEKRYFQLITAANEALNDLRFTNQEEIPLDVFLVKIAN 354
>gi|323340130|ref|ZP_08080394.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis
ATCC 25644]
gi|417972707|ref|ZP_12613597.1| DNA polymerase III subunits gamma and tau [Lactobacillus ruminis
ATCC 25644]
gi|323092321|gb|EFZ34929.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus ruminis
ATCC 25644]
gi|346330918|gb|EGX99147.1| DNA polymerase III subunits gamma and tau [Lactobacillus ruminis
ATCC 25644]
Length = 577
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 191/354 (53%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F++LVGQ+++ ++L +A++ T YLF GPRGTGKTS +++FA ALNC
Sbjct: 5 ALYRVWRPQTFEDLVGQDMITKTLKNALATKQTTHAYLFAGPRGTGKTSCAKLFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + PC C C ++GR DV E+D+ N + + + P + +K++I
Sbjct: 65 PNQVNGDPCNECETCKAITAGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T + K+P + +SR+Q++ F +I G I
Sbjct: 125 IDEVHMLSTSAFNALLKTLEEPPANVVFILATTDPHKIPATIISRTQRFDFKRITSGAIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ +D+ AL+ IA + G +RDA +LDQ LS K+TL A + G V
Sbjct: 185 ERMEYILKQKQFEYDEQALNVIARAAEGGMRDALSILDQVLSFGDNKVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ + L+ L + +T + ++ D +L+ L N D+L A + LE
Sbjct: 245 TRENLIKYLSQVQNHETVAGLQTIHAILDEGKDSKRLLEDLINCCRDLLLYKQAPEMLEQ 304
Query: 591 CSEAR-KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F +++ + L R + L+E ++ +R S HQ+ +L V ++L+
Sbjct: 305 TGSVMIDDEFKSMAEKSNPETLYRYIDTLNEQQENMRYSMHQSVYLEVLTVKLA 358
>gi|318043030|ref|ZP_07974986.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
CB0101]
Length = 622
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 164/292 (56%), Gaps = 3/292 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ + +L +A+ G + YLF GPRGTGKTS++RI A +LNC+
Sbjct: 8 LHHKYRPQRFDQLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGKTSSARILARSLNCI 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 SGDGPTPEPCGTCELCTSIANGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLDAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E I+ AL +A ++ G +RDAE LLDQLSLL + +EL+G V
Sbjct: 188 ERHLGWIAEQEQISITAEALHVVAQRAQGGLRDAESLLDQLSLLPPPVEPQAVWELLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAG 585
+ ELL L + + + + R L+ +P ++ LA L+ D +LAG
Sbjct: 248 PEQELLQLAESLAAGEPLGLIEAIRTLLERGREPSAVLQGLAGLLRDLVLAG 299
>gi|297205020|ref|ZP_06922416.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii
JV-V16]
gi|297149598|gb|EFH29895.1| DNA polymerase III (DNA directed) gamma-tau [Lactobacillus jensenii
JV-V16]
Length = 593
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 192/351 (54%), Gaps = 3/351 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI R V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L+D +PC C C SG D+ E+D+ N D + + P ++K++I
Sbjct: 65 LNLQDGEPCNECENCKAADSGAMPDIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I ++
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKQNLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RD+ +LDQ LS +K+ A + G
Sbjct: 185 DRMKFILEQEDIPYENQALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + L L+ S ++ + +L++ L+S+L +L + +L K +D SE
Sbjct: 245 AREATEQLFLNLLNQKVSESLELSHKLLQDGATAKNLLSELISLATETMLVLKANKD-SE 303
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
F K ++ ++ + + +E LR + + L V L+++++
Sbjct: 304 FLTKDFTKQITDVPEKRYFQLITAANEALNDLRFTNQEEIPLDVFLVKIAN 354
>gi|357042702|ref|ZP_09104405.1| hypothetical protein HMPREF9138_00877 [Prevotella histicola F0411]
gi|355369081|gb|EHG16483.1| hypothetical protein HMPREF9138_00877 [Prevotella histicola F0411]
Length = 600
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 192/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + + C C C F+ GRS ++ E+D+ N + + SLM+ +PP R+K+FII
Sbjct: 68 PIAEGEACNECESCNAFNEGRSYNIFELDAASNNSVENIKSLMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ DI
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKVLPTILSRCQIYDFERMTVRDIIG 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E I +D+ AL+ IA K++G +RDA + DQ + + I+ E + ++
Sbjct: 188 HLKSVAEKENIKYDEQALNVIAEKADGGMRDALSIFDQAASFSQGDISYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
++ +++DLAL + S ++ ++ D LI+ LA+ + ++L K L +
Sbjct: 248 EENYFNIIDLALENKVSEIMVLLNTVINKGFDGGNLINGLASHVRNVLMAKDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + L ALKI++ + + R S ++ + + L++++
Sbjct: 308 VSDQQRLRYQSQAQKCPTPFLYDALKIMNRCDVEYRQSSNKRLLVELTLIEVA 360
>gi|239637703|ref|ZP_04678673.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri
L37603]
gi|239596728|gb|EEQ79255.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri
L37603]
Length = 566
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 186/351 (52%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G + DV E+D+ N D + ++ P S +K++I
Sbjct: 65 TNSTDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLEQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL+ + +++ +D AL+FIA S G +RDA ++DQ G + +TL A + G V
Sbjct: 185 ERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC--LEDCS 592
+ L +L + D + R + + + +LI+ + + D + K E
Sbjct: 245 DEASLNELFKDVVKGDVKASFTRYHQFVTEGKEVNRLINDMIYFVRDTIMNKTSNQEVEY 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+A +F D+ L R + I+++T +R S +Q+ V L++L+
Sbjct: 305 DALLHF--------DLDTLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLA 347
>gi|238855363|ref|ZP_04645675.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3]
gi|260664921|ref|ZP_05865772.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US]
gi|238832024|gb|EEQ24349.1| DNA polymerase III subunit gamma/tau [Lactobacillus jensenii 269-3]
gi|260561404|gb|EEX27377.1| DNA polymerase III gamma-tau [Lactobacillus jensenii SJ-7A-US]
Length = 593
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/351 (31%), Positives = 194/351 (55%), Gaps = 3/351 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +VGQ + +L +AI R V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVVGQEAITDTLKNAIIRNKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L+D +PC C C SG D+ E+D+ N D + + P ++K++I
Sbjct: 65 LNLQDGEPCNECENCKAADSGAMPDIIEIDAASNNGVDEIREIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I ++
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKQNLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ +AL IA ++G +RD+ +LDQ LS +K+ A + G
Sbjct: 185 DRMKFILEQENIPYEDSALQVIAQVADGGMRDSLSILDQLLSFEKEKVEYKDALNITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + L L+ S ++ + +L++ L+S+L +L + +L K +D
Sbjct: 245 ARETTEQLFLNLLNQKVSESLDLSHKLLQDGATAKNLLSELISLATETMLVLKANKDSEF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
K+F + T+ + ++ + + +E LR + + L V L+++++
Sbjct: 305 LTKDFTNQITTVPE-KRYFQLITAANEALNDLRFTNQEEIPLDVFLVKVAN 354
>gi|255658584|ref|ZP_05403993.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida
DSM 20544]
gi|260849391|gb|EEX69398.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida
DSM 20544]
Length = 631
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 184/357 (51%), Gaps = 6/357 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F +LVGQ + R+L +AI+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRKWRPQTFKDLVGQEHISRTLANAITSGHIGHAYLFAGPRGTGKTSTAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PCG C +C + G S DV E+D+ D + L ++ P R+K++I
Sbjct: 65 EHGPTPEPCGQCEQCRKIADGSSMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HVVF++ T E K+P + SR Q+Y F +I +I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRITVEEIE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
SRLR I E + + AL IA +++G +RDA +LDQ + L + IT +++G+V
Sbjct: 185 SRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAEGTITAERVRQILGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA---NLIMDILAGKCLE-- 589
D + + + + + EL+R D Q++S+L+ +M A +E
Sbjct: 245 GHDWIYKMTKALAARNVQEALQILAELLRDGKDLKQILSELSLHLRSLMIFQAAGTVEAM 304
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D ++ + L R + L E +++ S + VAL++L E
Sbjct: 305 DLYAEPQDVLQDQAKLFAPEVLPRMIARLHEAMTEMKWSPQPRITVEVALMELCRPE 361
>gi|358054236|ref|ZP_09147480.1| DNA polymerase III gamma and tau subunits [Staphylococcus simiae
CCM 7213]
gi|357256766|gb|EHJ07094.1| DNA polymerase III gamma and tau subunits [Staphylococcus simiae
CCM 7213]
Length = 568
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 186/349 (53%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQEHVTKTLKNAISKNKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECAICTGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISISQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + ++++ AL+FIA S G +RDA ++DQ G ++TL A + G V
Sbjct: 185 ERLQYVADAQHLDYEDHALEFIAKASEGGMRDALSIMDQAIAFGDGQLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L + + D R + + +LI+ + + D + K +
Sbjct: 245 HDEALNQLFEEIVKGDVQAAFQRYHHFIAEGKEVNRLINDMIYFVRDTIMNKTAD----- 299
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++N + + D+ L + + I+++T +R S +Q V L++L+
Sbjct: 300 KENDYDALMT-LDLNMLYQMIDIINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|302872970|ref|YP_003841603.1| DNA polymerase III subunits gamma and tau [Clostridium
cellulovorans 743B]
gi|307686515|ref|ZP_07628961.1| DNA polymerase III subunits gamma and tau [Clostridium
cellulovorans 743B]
gi|302575827|gb|ADL49839.1| DNA polymerase III, subunits gamma and tau [Clostridium
cellulovorans 743B]
Length = 539
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 207/390 (53%), Gaps = 9/390 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ+ V +L + + + YL G RGTGKTS ++I + A+NC
Sbjct: 5 ALYREWRPRNFGEVVGQSQVTVTLKNQVKNNRIAHAYLLCGTRGTGKTSTAKILSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++++ PP ++FK++I
Sbjct: 65 LNPIDGEPCNECEMCKKINEGIAIDVTEMDAASHNGVDDIRNIIEDVQYPPQEAKFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L L +LE + V+F++ T + KLP + LSR Q+Y F +I++ DI
Sbjct: 125 IDEVHMLTMGAVNAFLKTLEEPPKRVLFILATTDPQKLPITILSRCQRYDFKRIRNVDIQ 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKIT-LSLAYELIGIV 534
+RLR I + I D AL FIA +G++RDA +LDQ +G + ++GIV
Sbjct: 185 ARLRSIVDNKNIEADDLALSFIARICDGALRDAVSILDQSIAMGNGVVNYDDVINILGIV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE----- 589
+++ LL L + + D + +++ S D + +L + ++L K E
Sbjct: 245 TNEHLLRLTECIIEKDIGKAIHVVDDVIYSGKDVNLFVKELVTHMRNLLMVKVTENPEEV 304
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-- 646
D S + +S+ ++++ R + IL E+E+Q++ SK +L +A++++ E
Sbjct: 305 LDMSMENIAHVKEQSSKIRVEEIMRHINILQESEEQMKWSKQSRIYLELAIIKMCKIEYD 364
Query: 647 SSLDLNDSKLCLRYAHDKDGDSHCTISPRD 676
+S ++ S++ + GD I P++
Sbjct: 365 TSKEMLLSRINKIEEMIQSGDISLEIKPKE 394
>gi|148241162|ref|YP_001226319.1| DNA polymerase III subunit gamma/tau [Synechococcus sp. RCC307]
gi|147849472|emb|CAK26966.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. RCC307]
Length = 604
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 186/345 (53%), Gaps = 14/345 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD+LVGQ + +L A+ RG + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQRFDQLVGQEAIAATLSQALQRGRIAPAYLFSGPRGTGKTSSARILARSLNCL 65
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 66 SSDGPTAEPCGTCELCTAIAAGGALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 126 VVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLQAL 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +EAIN A+ +A + G +RDAE LLDQLSLL + +EL+G V
Sbjct: 186 EQHLLWIAEQEAINITPEAVHLVAQLAQGGLRDAESLLDQLSLLPPPVEPEAVWELLGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ ELL L +SD + + R+L+ +P ++ LA L+ D++ A + LE
Sbjct: 246 PEQELLQLAAALQASDPLDLLQSCRQLLDRGREPAAVLQGLAGLLRDLVLALAAPQHLEL 305
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKI-----LSETEKQLRMSKH 630
S + N + A Q+L RA + L +E QLR S
Sbjct: 306 TSFSPAN---REALPALAQQLGRARLLRWQEGLRGSEVQLRQSAQ 347
>gi|417890624|ref|ZP_12534696.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21200]
gi|341854397|gb|EGS95267.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21200]
Length = 565
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 185/349 (53%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I +++ AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIEYEEEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALNHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|327313805|ref|YP_004329242.1| DNA polymerase III subunit gamma and tau [Prevotella denticola
F0289]
gi|326944679|gb|AEA20564.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
F0289]
Length = 600
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 192/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ GRS ++ E+D+ N + + SLM+ +PP R+K+FII
Sbjct: 68 PTVDGEACNECESCKAFAEGRSYNIFELDAASNNSVENIKSLMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ +I S
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIIS 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E I +++ AL IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D +++ LAL + + ++ +++ D L++ LA+ + ++L K L +
Sbjct: 248 ADNYFNIVSLALENKVNEIMVLLNDVLNKGFDGGHLVNGLASHVRNVLMAKDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + + L AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 VSQQQRLRYQEQAQKCPTRFLYNALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|379794949|ref|YP_005324947.1| DNA polymerase III subunit tau [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356871939|emb|CCE58278.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 565
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 186/349 (53%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSSDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + +A+ +++ AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQALEYEEEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L + + D ++ + + + + +LI+ + + D + K + S+
Sbjct: 245 HDEALNHLFEDIVQGDVQSSFKKYHQFISEGKEVNRLINDMIYFVRDTIMNKTADKDSDY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R D++ L + ++++T +R S +Q V L++L+
Sbjct: 305 RA------LMNLDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|325859977|ref|ZP_08173104.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
CRIS 18C-A]
gi|325482503|gb|EGC85509.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
CRIS 18C-A]
Length = 600
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 192/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ GRS ++ E+D+ N + + SLM+ +PP R+K+FII
Sbjct: 68 PTVDGEACNECESCKAFAEGRSYNIFELDAASNNSVENIKSLMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ +I S
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNIIS 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E I +++ AL IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D +++ LAL + + ++ +++ D L++ LA+ + ++L K L +
Sbjct: 248 ADNYFNIVSLALENKVNEIMVLLNDVLNKGFDGGHLVNGLASHVRNVLMAKDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + + L AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 VSQQQRLRYQEQAQKCPTRFLYNALQIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|169830250|ref|YP_001716232.1| DNA polymerase III subunits gamma and tau [Candidatus Desulforudis
audaxviator MP104C]
gi|169637094|gb|ACA58600.1| DNA polymerase III, subunits gamma and tau [Candidatus Desulforudis
audaxviator MP104C]
Length = 447
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 189/355 (53%), Gaps = 10/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F E+VGQ+ VVR+L +A+ V YLF GPRGTGKT+A+++ A A+NC
Sbjct: 5 TLYRTWRPQRFGEIVGQDHVVRTLQNAVRAERVAHAYLFCGPRGTGKTTAAKVLAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PCG C C +G + DV E+D+ D V L + P + RFK++I
Sbjct: 65 TERDGAEPCGECASCVSIGTGSAVDVLEIDAASNRGVDEVRELRERVKFHPAAGRFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HV+FV+ T E K+P + +SR Q++ F +I D+
Sbjct: 125 IDEVHMLTNEAFNALLKTLEEPPPHVIFVLATTEPHKVPLTIISRCQRFDFRRIGRPDLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGIV 534
SRL + + + + L IA ++GS+RDA +LDQ + L G ++TL+ + ++G V
Sbjct: 185 SRLEEVAAQAGLAVESGVLALIARVADGSLRDALGILDQAAALGGNRVTLADLHSILGTV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L L+ + +T ++ +E+ + + +L + + +L G
Sbjct: 245 TGEVLERLVGHLAAGETGAALLVLQEVEAQGKELRIIARELTDYLRGLLYGAF------- 297
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
G S+ D ++L L + + E+++R + Q L +A+++ S S +
Sbjct: 298 --GAGGATRSDLDRERLIEFLALFARAEQEMRFATRQILPLELAVVRAGRSLSGV 350
>gi|239825603|ref|YP_002948227.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. WCH70]
gi|239805896|gb|ACS22961.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. WCH70]
Length = 561
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 190/362 (52%), Gaps = 6/362 (1%)
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
T +L + FRP F ++VGQ V ++L SA+ + ++ YLF GPRGTGKTSA++I A A
Sbjct: 2 TYQALYRVFRPQRFADVVGQEHVTKTLQSALLQNKISHAYLFSGPRGTGKTSAAKILAKA 61
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
+NC +PC C C ++G DV E+D+ NR D + + P S R+K
Sbjct: 62 VNCEHAPTAEPCNECPACIGITNGAIPDVLEIDAASNNRVDEIRDIRDKVKFAPTSVRYK 121
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
++IIDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFRRIPLH 181
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELI 531
I +RLR++ ++ I AL IA ++G +RDA LLDQ +S ++ L +
Sbjct: 182 SIVARLRQVIEQQGIKASDEALFAIARAADGGMRDALSLLDQAISFSDGELLLEDVLAMT 241
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
G VS L L+ DT+ ++ E+M DP +LI L D+L K
Sbjct: 242 GSVSSATLASLVRAIYEKDTATSLQLLEEMMDQGKDPNRLIEDLILYYRDLLLYKTAPHV 301
Query: 592 SEARK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
A K + F + + +++L++++++++ + H +L VAL++L +
Sbjct: 302 EGAIKGTVVDDTFQHLAQSVPLSDIYETIEVLNKSQQEMKWTNHPRIFLEVALVKLCHQQ 361
Query: 647 SS 648
+S
Sbjct: 362 AS 363
>gi|258424489|ref|ZP_05687366.1| DNA polymerase III [Staphylococcus aureus A9635]
gi|418309231|ref|ZP_12920802.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21194]
gi|418888375|ref|ZP_13442514.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1524]
gi|257845084|gb|EEV69121.1| DNA polymerase III [Staphylococcus aureus A9635]
gi|365234646|gb|EHM75575.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21194]
gi|377756988|gb|EHT80885.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 565
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 185/349 (53%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I +++ AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIEYEEEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALNHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|289577298|ref|YP_003475925.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
italicus Ab9]
gi|289527011|gb|ADD01363.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
italicus Ab9]
Length = 515
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 192/361 (53%), Gaps = 5/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E+VGQ +V++L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAYLFTGTRGTGKTSIAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ + +PC C C ++ + DV E+D+ N + V L +S P +++K++I
Sbjct: 64 LNNAEGEPCNSCDICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYAPSQTKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E DKLP + LSR Q++ F +I IA
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTRLIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L RIC + I + L IA NGS+RDA LL+Q +S IT E++G+
Sbjct: 184 QNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKEGFITYEDVCEMLGVA 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ L LLD + D + ++ + +++ ID + L ++ D++ G+ L++
Sbjct: 244 NDEMLFSLLDCINAKDVAASLKQLDKILSYGIDLGNFLKSLTYILRDMVLYKTGGEELKE 303
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+ + L+ AL+ + +++++ + T L + +L+L E S D
Sbjct: 304 ILYNNPETIKEKVQNFGIAFLTNALEKFTNLQREIKYAISPLTLLEITILRLIKPEISYD 363
Query: 651 L 651
+
Sbjct: 364 M 364
>gi|148655673|ref|YP_001275878.1| DNA polymerase III subunits gamma and tau [Roseiflexus sp. RS-1]
gi|148567783|gb|ABQ89928.1| DNA polymerase III, subunits gamma and tau [Roseiflexus sp. RS-1]
Length = 599
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 183/352 (51%), Gaps = 6/352 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++R FDEL+GQ VVR+L +AI+ G V YLF GPRG GKT+ +R+ A A+NC
Sbjct: 5 ALYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ ++PCG+C C + G + DV E+D+ + +++ P +R K++I
Sbjct: 65 TAPPAERPCGVCESCRAIAEGHAVDVIEMDAASHTSVEDAREIIERVQFRPAVARTKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E+ K+P + LSR Q++ F + IA
Sbjct: 125 IDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHTVASIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIV 534
+ LR I +E + + + IA + GS+RDA +LDQL + G I+L L+G
Sbjct: 185 AHLRSIAAQEGVTLEAGVAEAIARAATGSMRDALSVLDQLMAYGGGTISLEQVRNLLGAG 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQL-----ANLIMDILAGKCLE 589
E+ L D ++ D + + + D Q L A +++ A + L
Sbjct: 245 EMQEVTALADALIAGDLPGALQVIANVAAAGADLRQFTRDLVERLRAVMLLRAGADRSLL 304
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
D +E + AD+ L R +K+ SE + QLR+S + L +A+++
Sbjct: 305 DVAEEEAVQIERQAHSADLGALMRWVKLFSELDYQLRVSSYGQLPLELAVIE 356
>gi|323344967|ref|ZP_08085191.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC
33269]
gi|323094237|gb|EFZ36814.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella oralis ATCC
33269]
Length = 597
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 199/392 (50%), Gaps = 19/392 (4%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC +
Sbjct: 8 ARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCQN 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
E + C C C F+ RS ++ E+D+ N + + +LM+ +PP ++K+FII
Sbjct: 68 PTETGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + +SR Q Y F ++ I
Sbjct: 128 DEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERMSVQGIVD 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I ++ AL IA K++G +RDA + DQ S IT E + ++
Sbjct: 188 HLKMVADKEGITYEDQALSIIAEKADGGMRDALSIFDQAASFCQGNITYKKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ +++DL+L + + ++ ++ D LI+ LA I ++L K L +
Sbjct: 248 AENYFNIVDLSLQNKVAEIMVLLNSIISKGFDGGHLINGLAAHIRNVLMAKDEQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
S +++ F + +A L ALKIL++ + R S ++ + + L+Q++ S D
Sbjct: 308 VSRQQRDKFREQAVKAPTAFLYNALKILNQCDINYRQSSNKRLLVELTLIQVAQLTQSED 367
Query: 651 LNDSKLCLRYAHDKDGDSHCTISPRDSFKHLV 682
D G C + FK++V
Sbjct: 368 ------------DAAGAGRCPTRLKSLFKNIV 387
>gi|325956089|ref|YP_004286699.1| DNA polymerase III subunits gamma and tau [Lactobacillus
acidophilus 30SC]
gi|325332654|gb|ADZ06562.1| DNA polymerase III subunits gamma and tau [Lactobacillus
acidophilus 30SC]
Length = 602
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 187/358 (52%), Gaps = 9/358 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNKCANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKADLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ A+ IA ++G +RDA +LDQ LS + + A ++ G
Sbjct: 185 KRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKESVNYEDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +L LS D + A+E + ++ +L ++ L + +
Sbjct: 245 DRKNVEQILLKLLSKDAPAALKLAQEELDKGASSKNILDELVDMATKSL---MIIKTGDD 301
Query: 595 RKNFFGKHTSEADMQKLS-----RALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
KN F A ++ + R + + ++ LR + Q L V L++ ++SES
Sbjct: 302 DKNMFLSEDFIAKIKDVPTSTYYRLITLANKALNDLRYTNQQQIPLEVFLVEATTSES 359
>gi|385816966|ref|YP_005853356.1| DNA polymerase III subunits gamma and tau [Lactobacillus amylovorus
GRL1118]
gi|327182904|gb|AEA31351.1| DNA polymerase III subunits gamma and tau [Lactobacillus amylovorus
GRL1118]
Length = 602
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 187/358 (52%), Gaps = 9/358 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNKCANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKADLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ A+ IA ++G +RDA +LDQ LS + + A ++ G
Sbjct: 185 KRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKESVNYEDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +L LS D + A+E + ++ +L ++ L + +
Sbjct: 245 DRKNVEQILLKLLSKDAPAALKLAQEELDKGASSKNILDELVDMATKSL---MIIKTGDD 301
Query: 595 RKNFFGKHTSEADMQKLS-----RALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
KN F A ++ + R + + ++ LR + Q L V L++ ++SES
Sbjct: 302 DKNMFLSEDFIAKIKDVPTSTYYRLITLANKALNDLRYTNQQQIPLEVFLVEATTSES 359
>gi|422423441|ref|ZP_16500394.1| DNA polymerase III subunit gamma/tau, partial [Listeria seeligeri
FSL S4-171]
gi|313635974|gb|EFS01905.1| DNA polymerase III subunit gamma/tau [Listeria seeligeri FSL
S4-171]
Length = 547
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 172/322 (53%), Gaps = 6/322 (1%)
Query: 332 YLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINR 391
YLF GPRGTGKTSA++IFA A+NC D +PC C C + G DV E+D+ N
Sbjct: 10 YLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNG 69
Query: 392 SDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
+ + + + P +++K++IIDE +L + +L +LE +HV+F++ T E
Sbjct: 70 VEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPH 129
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
KLP + +SR Q++ F +I DI RL I EE I +D+ AL +A + G +RDA L
Sbjct: 130 KLPLTIISRVQRFDFKRITTQDIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSL 189
Query: 512 LDQLSLLG-KKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ 570
LDQ+ G +++T+ A E+ G V+ L L+ A D + + L+ DP++
Sbjct: 190 LDQVISYGSEEVTVEDALEITGSVAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVR 249
Query: 571 LISQLANLIMDIL---AGKCLEDCSEAR--KNFFGKHTSEADMQKLSRALKILSETEKQL 625
L+ L D+L LE+ E + F AD K+ +KIL+ ++Q+
Sbjct: 250 LVEDLLVFFRDVLLYQKAPSLEETLERALVDDDFVALAKRADSLKIYEFVKILNTAQQQM 309
Query: 626 RMSKHQTTWLTVALLQLSSSES 647
R S H ++ VAL+QL+ + S
Sbjct: 310 RFSNHPGIYVEVALVQLTQTGS 331
>gi|226325913|ref|ZP_03801431.1| hypothetical protein COPCOM_03726 [Coprococcus comes ATCC 27758]
gi|225205455|gb|EEG87809.1| DNA polymerase III, subunit gamma and tau [Coprococcus comes ATCC
27758]
Length = 522
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 193/369 (52%), Gaps = 14/369 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ+ ++ +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPAEFEDVKGQDHIITTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C ++G S +V E+D+ N D + + + P R+K++I
Sbjct: 65 EHPVDGSPCGECTMCKNIAAGTSMNVIEIDAASNNGVDNIREIREEVSYRPTEGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRITIDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+RL + +E + ++ A+ +IA ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 ARLDELMKKEQVEVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGQKLTYDHVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V D LL +S D + EL+ + QL + + ++L K +ED
Sbjct: 245 VDTDVFSRLLRQIISQDVGKVLATVEELVMQGRELTQLAADFTWYLRNLLLVKTSDNMED 304
Query: 591 CSEARKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQL----- 642
+ + EA M + L R ++I SE QL+ + + L V L++L
Sbjct: 305 VLDVSTENLAQLKEEAQMIESGVLLRYIRIFSELTNQLKYATQKRVLLEVTLIKLCKPQM 364
Query: 643 -SSSESSLD 650
S+ +S LD
Sbjct: 365 ESTKDSLLD 373
>gi|313890779|ref|ZP_07824404.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudoporcinus SPIN 20026]
gi|416851546|ref|ZP_11908691.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudoporcinus LQ 940-04]
gi|313120880|gb|EFR43994.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739035|gb|EHI64267.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudoporcinus LQ 940-04]
Length = 560
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 149/242 (61%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFAEMVGQKVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVDGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE SQ+VVF++ T EL K+P + LSR Q++ F IK DI+
Sbjct: 124 IDEVHMLSSGAFNALLKTLEEPSQNVVFILATTELHKIPATILSRVQRFEFKSIKQNDIS 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
S L I E I + +AALD IA ++ G +RDA +LDQ LSL + ++ L++A E+ G
Sbjct: 184 SHLAWILETEEIPYQEAALDLIARRAEGGMRDALSILDQALSLSSENQVDLAIAEEITGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|347525069|ref|YP_004831817.1| DNA polymerase III subunit gamma/tau [Lactobacillus ruminis ATCC
27782]
gi|345284028|gb|AEN77881.1| DNA polymerase III subunit gamma/tau [Lactobacillus ruminis ATCC
27782]
Length = 577
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 192/354 (54%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F++LVGQ+++ ++L +A++ T YLF GPRGTGKTS +++FA ALNC
Sbjct: 5 ALYRVWRPQTFEDLVGQDMITKTLKNALATKQTTHAYLFAGPRGTGKTSCAKLFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + PC C C ++GR DV E+D+ N + + + P + +K++I
Sbjct: 65 PNQVNGDPCNECEICKAITAGRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T + K+P + +SR+Q++ F +I G I
Sbjct: 125 IDEVHMLSTSAFNALLKTLEEPPANVVFILATTDPHKIPATIISRTQRFDFKRITSGAIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ +D+ AL+ IA + G +RDA +LDQ LS ++TL A + G V
Sbjct: 185 ERMEYILKQKQFEYDEKALNVIARAAEGGMRDALSILDQVLSFGDNEVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ + L+ L+ + +T + ++ D +L+ L N D+L A + LE
Sbjct: 245 TRENLIKYLNQVQNHETVAGLQTIHAILDEGKDAKRLLEDLINCCRDLLLYKQAPEMLEQ 304
Query: 591 CSEAR-KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F +++ + L R + L+E ++ +R S HQ+ +L V ++L+
Sbjct: 305 TGSVMIDDEFKDMAEKSNPETLYRYIDTLNEQQENMRYSMHQSVYLEVLTVKLA 358
>gi|315037610|ref|YP_004031178.1| DNA polymerase III, subunit gamma/tau [Lactobacillus amylovorus GRL
1112]
gi|312275743|gb|ADQ58383.1| DNA polymerase III, gamma/tau subunit [Lactobacillus amylovorus GRL
1112]
Length = 602
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 187/358 (52%), Gaps = 9/358 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNKCANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKADLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ A+ IA ++G +RDA +LDQ LS + + A ++ G
Sbjct: 185 KRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKESVNYEDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +L LS D + A+E + ++ +L ++ L + +
Sbjct: 245 DRKNVEQILLKLLSKDAPAALKLAQEELDKGASSKNILDELVDMATKSL---MIIKTGDD 301
Query: 595 RKNFFGKHTSEADMQKLS-----RALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
KN F A ++ + R + + ++ LR + Q L V L++ ++SES
Sbjct: 302 DKNMFLSEDFIAKIKDVPTSTYYRLITLANKALNDLRYTNQQQIPLEVFLVEATTSES 359
>gi|158321874|ref|YP_001514381.1| DNA polymerase III subunits gamma and tau [Alkaliphilus oremlandii
OhILAs]
gi|158142073|gb|ABW20385.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus oremlandii
OhILAs]
Length = 563
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 190/356 (53%), Gaps = 7/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L ++FRP F++++GQ+ V+ L + IS + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LS ED PC C C + DV E+D+ N D V + ++ PP ++KI+I
Sbjct: 65 LSAEDANPCNQCEVCEGILTENIMDVIEIDAASNNGVDNVREIRENVKYPPSKGKYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q++ F ++ DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKPVRINDIM 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL IC + I ++ AL IA S+G++RDA +L+Q +S +T + ++G+V
Sbjct: 185 KRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTEDTLTYTNVVNILGMV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ + + DL+D + DTS+ + +++ D L+ + + IL K L
Sbjct: 245 NYEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDIISHFRSILLAKMNVQLDEL 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
E R++ + + + +++ + LS+ E +L+ S T + + ++ L S
Sbjct: 305 LTLPEERQDRLRQQGALFTINQITSFIYNLSDIESKLKYSAQPKTLIEIGIVGLCS 360
>gi|116071743|ref|ZP_01469011.1| DNA-directed DNA polymerase [Synechococcus sp. BL107]
gi|116065366|gb|EAU71124.1| DNA-directed DNA polymerase [Synechococcus sp. BL107]
Length = 636
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 165/298 (55%), Gaps = 6/298 (2%)
Query: 288 STYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASR 347
STY L K+RP FD+LVGQ + +L +A++ + YLF GPRGTGKTS++R
Sbjct: 3 STYQ----PLHHKYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSAR 58
Query: 348 IFAAALNCLSLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP 405
I A +LNC + + +PCG C C +SG + DV E+D+ D + L++ +
Sbjct: 59 ILARSLNCQNSDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIERSRFA 118
Query: 406 PFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYH 465
P +R+K++++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++
Sbjct: 119 PVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFD 178
Query: 466 FPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLS 525
F +I + L I +E+I A+ +A +S G +RDAE LLDQLSLL I +
Sbjct: 179 FRRIPLDALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEAN 238
Query: 526 LAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
++L+G V + ELL L SS+ + R L+ DP ++ LA ++ D++
Sbjct: 239 AVWDLLGAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGSVLQGLAGVLRDLV 296
>gi|210623910|ref|ZP_03294119.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275]
gi|210153274|gb|EEA84280.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275]
Length = 560
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 194/354 (54%), Gaps = 8/354 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ ++R+L + I G + Y+F G RGTGKT+A++IFA A+NC
Sbjct: 4 ALYREYRPQKFSDVVGQEHIIRTLKNEIMSGNIAHAYMFSGTRGTGKTTAAKIFARAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + + D+ E+D+ N D V + +S P +S++K++I
Sbjct: 64 LNPKDGEPCNECESCKSILNDSTVDIFEIDAASNNSVDDVREIRESVKYTPANSKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L +L ++E ++VVF+ T E +K+ + LSR Q++ F +I ++
Sbjct: 124 IDEAHMLSKGASNALLKTIEEPPEYVVFIFATTEPNKMIPTVLSRCQRFDFKRITVEEMK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
R+R IC +E + ++ AL IA S G++RDA +LD+ L G K + E++GIV
Sbjct: 184 ERMRYICSKEGVEVEEDALSVIARNSQGALRDALSILDRCILFGDKYLRYEDVVEILGIV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRS----KIDPMQLISQLANLIMDILAGKCLED 590
+ DE+ L D ++ + + + + + S +I +L+ + NL++ + AG ++
Sbjct: 244 NIDEIFGLADDIITHNVAAALKKIDSFISSGKDIEILSSELLEHMRNLMICLAAGDSAKE 303
Query: 591 CSEARKNFFG---KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
+ F K D+ + R + ILSE + L+ + + T V +++
Sbjct: 304 IISVSDDEFDRMKKSIENTDIDNVIRIINILSEIQNNLKYATDKRTIFEVGIIK 357
>gi|443477235|ref|ZP_21067096.1| DNA polymerase III, subunits gamma and tau [Pseudanabaena biceps
PCC 7429]
gi|443017680|gb|ELS32071.1| DNA polymerase III, subunits gamma and tau [Pseudanabaena biceps
PCC 7429]
Length = 652
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 195/362 (53%), Gaps = 18/362 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +A++ G + YLF G RGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQIFADLVGQEAIAHTLSNALNTGRIAPAYLFTGARGTGKTSSARIMAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + P CG C C ++G + D+ E+D+ D + L++ A P +RFK++
Sbjct: 66 SSDSPTPHPCGKCELCHSIANGNALDITEIDAASNTGVDNIRELIERAQFAPVKARFKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDEC +L + +L +LE V F++ T + ++ + +SR Q++ F +I +
Sbjct: 126 IIDECHMLSTAAFNALLKTLEEPPDRVTFILATTDPQRVLPTIISRCQRFDFRRIPLDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L +I E IN AL +A + G +RDAE LLDQLSLL +IT+ ++L+G V
Sbjct: 186 VKHLGKIAANENINIHIEALTLVAQIAQGGLRDAESLLDQLSLLDGEITVEAVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ +LL L++ A+++D S +I R +M +P+ ++ LAN+ D+L K D
Sbjct: 246 PEQDLLSLVE-AIAADHSTQLIDYVRRIMDRGREPLIVLQNLANVYRDLLIAKTASD--- 301
Query: 594 ARKNFFGKHTSEAD-MQKLSRALKI---------LSETEKQLRMSKHQTTWLTVALLQLS 643
R + +S + + +L++ L I L E Q+R S WL V L+ L
Sbjct: 302 -RSDLVAMTSSGWERLIQLAQGLAIPNILLGQQHLRSAELQIRNSTQPRLWLEVTLMGLL 360
Query: 644 SS 645
S
Sbjct: 361 PS 362
>gi|332800257|ref|YP_004461756.1| DNA polymerase III subunits gamma and tau [Tepidanaerobacter
acetatoxydans Re1]
gi|332697992|gb|AEE92449.1| DNA polymerase III, subunits gamma and tau [Tepidanaerobacter
acetatoxydans Re1]
Length = 599
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 185/357 (51%), Gaps = 12/357 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FDE+VGQ +V +L + + G + YLF G RGTGKTS +R+FA ALNC
Sbjct: 5 ALYRKYRPQNFDEIVGQKAIVTTLKNQLKSGKIAHAYLFCGMRGTGKTSTARVFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PC C C +SG DV E+D+ D + L + P R+KI+I
Sbjct: 65 EKGPIENPCNTCASCKAITSGNMMDVIEMDAASNRGIDDIRDLREKVNFAPSEGRYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE ++V+F++ T E DKLP + LSR ++ F +I +IA
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPKYVIFILATTEPDKLPPTILSRCMRFDFKRITTSEIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYE----LI 531
RL+++ + I+ D AL IAA S GS+RDA LLD+ GK LAYE L+
Sbjct: 185 ERLKKVAQDSEIDVDDKALLQIAAHSQGSVRDALSLLDKAMAFGKG---KLAYEDILILL 241
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ----LISQLANLIM-DILAGK 586
G VS++ D+ + + ++ + E+ + D + L+ NL+M I A +
Sbjct: 242 GAVSNEVFYDVSAAVIKGNGTDLLNVVDEVAKQGKDLFRFMDDLLEHFRNLLMVSIGADR 301
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
L D + + + +KL + +L + ++ S L AL++L+
Sbjct: 302 SLIDVIDEDYAKLQEISKGYTREKLLSIINVLKDAANDVKWSSQPRIILEAALVKLT 358
>gi|312109169|ref|YP_003987485.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y4.1MC1]
gi|336233564|ref|YP_004586180.1| DNA polymerase III subunits gamma and tau [Geobacillus
thermoglucosidasius C56-YS93]
gi|423718290|ref|ZP_17692472.1| DNA polymerase III, subunits gamma and tau [Geobacillus
thermoglucosidans TNO-09.020]
gi|311214270|gb|ADP72874.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
Y4.1MC1]
gi|335360419|gb|AEH46099.1| DNA polymerase III, subunits gamma and tau [Geobacillus
thermoglucosidasius C56-YS93]
gi|383365287|gb|EID42585.1| DNA polymerase III, subunits gamma and tau [Geobacillus
thermoglucosidans TNO-09.020]
Length = 561
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 190/356 (53%), Gaps = 6/356 (1%)
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
T +L + FRP F ++VGQ V ++L SA+ + ++ YLF GPRGTGKTSA++IFA A
Sbjct: 2 TYQALYRVFRPQRFADVVGQEHVTKTLQSALLQNKISHAYLFSGPRGTGKTSAAKIFAKA 61
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
+NC +PC C C ++G DV E+D+ NR D + + P S R+K
Sbjct: 62 VNCEHAPTAEPCNECPACIGITNGTIPDVLEIDAASNNRVDEIRDIRDKVKFAPTSVRYK 121
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
++IIDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFRRIPLH 181
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELI 531
I +RLR + ++ + AL IA ++G +RDA LLDQ +S ++ L +
Sbjct: 182 SIVARLRHVMEQQGMTASDEALFAIARAADGGMRDALSLLDQAISFSDGELLLEDVLAMT 241
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
G VS L L+ D + ++ E+M DP +L+ L D+L K
Sbjct: 242 GSVSSATLASLIQAVYEKDAATSLRLLEEMMDQGKDPNRLMEDLILYYRDLLLYKTAPHV 301
Query: 592 SEARKNFFG----KHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
A K +H +E+ + + A+++L++++++++ + H +L VAL++L
Sbjct: 302 EGAIKGTIVDDTFQHLAESIPLSDIYEAIEVLNKSQQEMKWTNHPRIFLEVALVKL 357
>gi|428204196|ref|YP_007082785.1| DNA polymerase III subunits gamma and tau [Pleurocapsa sp. PCC
7327]
gi|427981628|gb|AFY79228.1| DNA polymerase III, subunit gamma/tau [Pleurocapsa sp. PCC 7327]
Length = 688
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 194/358 (54%), Gaps = 10/358 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI + YLF GPRGTGKTS++RI +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQEAIATTLTNAIVSQRIAPAYLFAGPRGTGKTSSARILTKSLNCL 65
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S E PCG C C + G + D E+D+ D + L++ A P R+K++
Sbjct: 66 SSERPTPTPCGKCEVCRAIARGSALDAIEIDAASNTGVDNIRDLIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IDEC +L + +L +LE + V+F++ T + ++ + +SR Q++ F +I +
Sbjct: 126 AIDECHMLSTAAFNALLKTLEEPPERVIFILATTDPQRVLPTIISRCQRFDFRRIPLESM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ L+ I +E I + A+ +A +NG +RDA+ LLDQLSLL KIT ++L+G V
Sbjct: 186 VAHLKYIASQENIEINDEAIILVAQIANGGLRDAQSLLDQLSLLSGKITPDRVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKCL---ED 590
++ +LL LL A++SD + V+ + R LM +P+ ++ LAN +++L K D
Sbjct: 246 AERDLLKLLR-AIASDKAEAVLEQCRHLMNRGREPLVILQNLANFYLNLLIAKTAPNRPD 304
Query: 591 CSEARKNFFGKHTSEA---DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ + + EA ++ + R + L ++E QL+ + WL V LL L S
Sbjct: 305 MVAVTSSTWQQLCQEAQRWELNAILRGQQHLKDSEAQLKNTTQPRLWLEVTLLGLLPS 362
>gi|358066466|ref|ZP_09152992.1| hypothetical protein HMPREF9473_05055 [Clostridium hathewayi
WAL-18680]
gi|356695218|gb|EHI56851.1| hypothetical protein HMPREF9473_05055 [Clostridium hathewayi
WAL-18680]
Length = 535
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 189/365 (51%), Gaps = 10/365 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++ GQ+ +V++L + I+ + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPTSFEDVKGQDHIVQTLKNQITSQRIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C S S +V E+D+ N + + + + PP +K++I
Sbjct: 65 EHPIDGSPCNECASCKNILSASSLNVMEIDAASNNGVENIREIREQVQYPPTEGNYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I G +A
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPITVLSRCQRYDFKRITIGTLA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
RLR + + E I + AL +IA ++GS+RDA LLDQ G+K+T A E++G
Sbjct: 185 DRLRELSLAEHIEVEDKALTYIAKAADGSMRDALSLLDQCVAFHYGEKLTYDQALEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE---- 589
V L T + + + EL+ + Q ++ + ++L K E
Sbjct: 245 VDTTVFSQLFRAVREEKTKDCIYKLEELVIQGRELSQFVNDFIWYMRNLLVLKTTEAAED 304
Query: 590 --DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--SS 645
D S + + AD + L R ++I SE QLR + + + +A ++L+ +
Sbjct: 305 ILDMSADNRKMLEEDAKLADEETLMRYIRIFSELSNQLRYASQKRVLVELAFIKLTKPAM 364
Query: 646 ESSLD 650
E +LD
Sbjct: 365 EHNLD 369
>gi|407010067|gb|EKE25066.1| hypothetical protein ACD_5C00307G0001, partial [uncultured
bacterium]
Length = 379
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 153/274 (55%), Gaps = 1/274 (0%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
SL +K+RP F++++GQ +V++L +AI+ G + YLF GPRGTGKT+ +RIFA ++N
Sbjct: 3 LSLYRKYRPATFNDVIGQTHIVQTLSNAITHGRIGHAYLFTGPRGTGKTTMARIFARSVN 62
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C PC C C GRS D+ E+D+ D + L ++ PP +++KI+
Sbjct: 63 CQQPNGAIPCQECDVCKNIIEGRSLDIFEIDAASNTGVDNIRELRENVKFPPSQAKYKIY 122
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE H +F++ T E+ K+P + +SR Q+Y F ++ I
Sbjct: 123 IIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEIHKVPETIISRCQRYDFTRLSLEHI 182
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGI 533
+L +I E + D+ AL+ IA + G +RDAE LL Q +SL KKIT E++G
Sbjct: 183 VKKLSKIAKSEGVEIDKQALEMIAISAEGGMRDAESLLGQVMSLEDKKITAKEVEEILGT 242
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKID 567
L D+ L D++N + EL + D
Sbjct: 243 TRRKSLEDMAKFLLEKDSTNAISLINELSQDGYD 276
>gi|304315581|ref|YP_003850726.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777083|gb|ADL67642.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 533
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 190/361 (52%), Gaps = 4/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E++GQN +VR+L + I G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAYLFCGTRGTGKTSVAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C+ C ++ D+ E+D+ N D V L + P ++K++I
Sbjct: 64 PNSVEGEPCNRCQICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYAPSICKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L G + +L +LE H +F++ T E +K+P + LSR Q++ F +I I+
Sbjct: 124 IDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQRFDFKRIPSKVIS 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ +I + IN + A+ IA NGS+RDA +L+Q +T +++G V+
Sbjct: 184 QNIGKIAKDSNINIENRAIAMIARHGNGSMRDAISILEQCVSYNDVLTYDDVCDILGTVN 243
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL----EDC 591
DD L L+ + + + +LM ID LI + + + DI+ K E+
Sbjct: 244 DDTLYTLVKRINDRNAKEVINQIDKLMLYGIDVSNLIKAMLSFLRDIVIYKTCGTESEEI 303
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
E N SE DM LS A++ L + + ++R ++ + +L+L + E S D+
Sbjct: 304 LETEINDKILKASEFDMSFLSNAIEKLIDLQGKIRYAQSPRILFEITVLKLMNPEISPDI 363
Query: 652 N 652
+
Sbjct: 364 D 364
>gi|291460808|ref|ZP_06600198.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291416581|gb|EFE90300.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 563
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 188/362 (51%), Gaps = 8/362 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F EL GQ V +L + + G + YLF G RGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKWRSRDFGELKGQGAVTEALRNQVRSGKIGHAYLFCGTRGTGKTSAAKIFARAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D PC LCR C SG S +V E+D+ N + + + + PP S R++++I
Sbjct: 64 ENPQDGNPCNLCRSCREILSGSSMNVLEMDAASNNGVEDIRKIREQVEYPPVSGRYRVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + L +LE ++VVF++ T E ++LP + LSR Q+Y F +I IA
Sbjct: 124 IDEVHMLSAAAFNAFLKTLEEPPEYVVFILATTEPNRLPITILSRCQRYDFRRISSEVIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
RL I E I AL +IA +GS+RDA LLDQ S ++I A ++G
Sbjct: 184 ERLGEIAGAEGIPVSAEALSYIARVGDGSMRDAVSLLDQCSAFQFDREINYEDALGILGA 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
V +L+ + + + + EL+ + Q +S + ++L K +ED S
Sbjct: 244 VDSSVFSELIRALSAREIRSALSLLSELIEQGRELSQFLSDFLYYVRNLLLAKTVEDLSG 303
Query: 594 ----ARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+R+NF + +L R ++ LSE QLR S + + + L++L+ E+
Sbjct: 304 LVDLSRENFQRLLEDKELFSTDELLRYIRRLSELINQLRYSPEKRVLIEIELIKLAYPET 363
Query: 648 SL 649
+
Sbjct: 364 DI 365
>gi|404418002|ref|ZP_10999783.1| DNA polymerase III subunits gamma and tau [Staphylococcus arlettae
CVD059]
gi|403489625|gb|EJY95189.1| DNA polymerase III subunits gamma and tau [Staphylococcus arlettae
CVD059]
Length = 574
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 183/351 (52%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMFRPQAFSDVVGQTHVTKTLRNAISKQKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 EHNVDGEPCNECAICTGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESQYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I + +I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAINEEEIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
RL+ + E+ I++D AL FIA S G +RDA ++DQ G + +TL A + G V
Sbjct: 185 ERLKFVAEEQEIDYDDEALTFIAKTSEGGMRDALSIMDQAIAFGDEHLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+ L L + D + + + + +LI+ + + D + K E E
Sbjct: 245 DEASLNQLFTEIIDGDVKSAFTTYHQFVSDGKEVNRLINDMIYFVRDTIMNKTSESTVEY 304
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
A F +++ L + + ++++T +R S +Q V L++LS
Sbjct: 305 DALMGF--------ELETLYQMIDVINDTLVSIRFSVNQNVHFEVLLVKLS 347
>gi|336422383|ref|ZP_08602532.1| hypothetical protein HMPREF0993_01909 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336008831|gb|EGN38837.1| hypothetical protein HMPREF0993_01909 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 523
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 188/355 (52%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ F+++ GQ+ +V++L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPDEFEDVKGQDAIVKTLKNQIKAERIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C ++G S +V E+D+ N D + + + P R+K++I
Sbjct: 65 EHPVDGSPCGECAMCRSIAAGTSMNVIEIDAASNNGVDNIREIREEVAYRPTEGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + LSR Q+Y F +I I+
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRISIETIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
RLR + +E ++ A+ +IA ++GS+RD+ LLDQ +G+K+T E++G
Sbjct: 185 DRLRELIDKEGWEVEEKAVRYIAKMADGSMRDSLSLLDQCVAFYIGEKLTYDHVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V + LL LS D ++ EL+ + QL S + ++L K +ED
Sbjct: 245 VDTETFSRLLRELLSMDVHKVIVTVEELVMQGRELSQLASDFTWYLRNLLLVKSSDNMED 304
Query: 591 CSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + EA M L R ++I S+ QL+ + + L V L++L
Sbjct: 305 VLDVSTENLAQLKEEAQMIDNDTLIRYIRIFSDLTNQLKYATQKRVLLEVTLIKL 359
>gi|365903471|ref|ZP_09441294.1| DNA polymerase III subunits gamma and tau [Lactobacillus
malefermentans KCTC 3548]
Length = 584
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 192/362 (53%), Gaps = 22/362 (6%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE++GQ ++ ++L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDEIIGQELITQTLKNALITKQTSHAYLFAGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 HFLKDGEPCNECDTCKAITRGTLNDVIEIDAASNNGVEEIRDIRDKAKYTPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +IK D
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQRFDFRRIKAADSF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I E+ + +D AL IA + G +RDA +LDQ LS +ITL+ A + G V
Sbjct: 185 KRMKYILDEKQVTYDDQALKVIAKAAEGGMRDALSILDQALSFGDNEITLNNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----------- 583
L + + T++ ++ ++++ D + I L + + ++L
Sbjct: 245 EKGLLSTYISQVIQMKTTDALVTLQKVLEEGKDAHRFIEDLLDYMRNLLLYQQAPEIVAD 304
Query: 584 --AGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
G+ ED + F + S D+ K+ + IL+ + Q+R++ H +L V +Q
Sbjct: 305 SELGEVPEDVEQ-----FSEQLSADDLFKI---INILNNIQSQMRLTNHPDIYLEVLTIQ 356
Query: 642 LS 643
L+
Sbjct: 357 LA 358
>gi|67923223|ref|ZP_00516710.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501]
gi|67854954|gb|EAM50226.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501]
Length = 687
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 195/355 (54%), Gaps = 10/355 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLNNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
++E PCG C C + G + DV E+D+ D + +++ + P R+K++
Sbjct: 67 AVEAPTASPCGECEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 126
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE + V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 127 VIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPLEAM 186
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
S L I +E I + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 187 VSHLTVIAQKENIEIEPEALTLVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLVGAV 246
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ +LL LL A++S+ VI + R+LM +P+ ++ LA +++L K + S+
Sbjct: 247 PERDLLSLLK-AINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIAKTAPERSD 305
Query: 594 ---ARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ +EA+ + + R + L E+E QL+ + WL V LL L
Sbjct: 306 LVAVTSTTWDDLCTEANQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGL 360
>gi|310819971|ref|YP_003952329.1| DNA polymerase III subunits gamma and tau [Stigmatella aurantiaca
DW4/3-1]
gi|309393043|gb|ADO70502.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca
DW4/3-1]
Length = 404
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 181/363 (49%), Gaps = 8/363 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP FD++ GQ +VR++ +AI V YLF GPRG GKT+A+R+ A ALNC
Sbjct: 6 LARKWRPQTFDDMTGQEHIVRTIANAIKMDRVAHAYLFCGPRGVGKTTAARLLAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PCG CR C +SG S DV E+D N + V + ++A P R KI+II
Sbjct: 66 QGPTASPCGTCRACTEITSGTSVDVAEIDGASNNGVENVREIRENAKYLPQRDRHKIYII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L G + +L +LE HV F+ T E KLP + LSR Q+++F +I +
Sbjct: 126 DEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQRHNFRRIPAARMLQ 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RL++IC E +L + +S G +RDA LLDQ L+ G + T E +G +
Sbjct: 186 RLKQICEAEGAGISDRSLSLVVRQSEGGMRDALSLLDQVLASCGAQPTDESVAEALGAID 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLEDC 591
+ D + + D + R E +D +L +LA +L + G+ +
Sbjct: 246 RTVVQDFAEALVRKDARKVLERVEETFNRGLDLKRLAEELALQLRHLFVTKAVGEAPAEL 305
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL---QLSSSESS 648
+E+ + EAD +L+R I+ + + L +ALL QLS S S
Sbjct: 306 AESEQKALIALAQEADSAQLARLFDIVHGCVWDVSRAAQPRLALEMALLKAIQLSPSSSI 365
Query: 649 LDL 651
DL
Sbjct: 366 PDL 368
>gi|346306813|ref|ZP_08848964.1| hypothetical protein HMPREF9457_00673 [Dorea formicigenerans
4_6_53AFAA]
gi|345907790|gb|EGX77491.1| hypothetical protein HMPREF9457_00673 [Dorea formicigenerans
4_6_53AFAA]
Length = 525
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 192/357 (53%), Gaps = 10/357 (2%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +KFRPN F+++ GQ+ +VR+L + I + YLF G RGTGKT+ ++IFA A+N
Sbjct: 4 MALYRKFRPNEFEDVKGQDAIVRTLKNQIEADRIGHAYLFCGTRGTGKTTVAKIFAKAVN 63
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C D PCG C C ++G S +V E+D+ N D + + + P R+K++
Sbjct: 64 CEHPVDGSPCGECAVCKAIAAGNSMNVIEIDAASNNGVDNIREIREEVAYRPTEGRYKVY 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE ++V+F++ T E K+P + LSR Q+Y F +I I
Sbjct: 124 IIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPVTILSRCQRYDFKRISIETI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS--LLGKKITLSLAYELIG 532
++RL+ + +E + ++ A+ +IA +GS+RDA LLDQ + +G+K+T E++G
Sbjct: 184 SARLQELINKEGWDVEEKAVRYIARMGDGSMRDALSLLDQCAAFYIGQKLTYDHVLEVLG 243
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGKCL 588
V + LL L + + V EL+ + QL + L NL++ + + +
Sbjct: 244 AVDTEVFSRLLRKILDRNVHSVVEIVDELVMQGRELSQLSADFTWYLRNLLL-VRSSDDM 302
Query: 589 EDCSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
ED + + EA M L R +++ S+ QL+ S + L VAL++L
Sbjct: 303 EDVLDVSSENLARLKEEAQMIEDDALIRYIRVFSDLTSQLKYSTQKRVMLEVALIKL 359
>gi|194476906|ref|YP_002049085.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora]
gi|171191913|gb|ACB42875.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora]
Length = 584
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 193/361 (53%), Gaps = 8/361 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L QK+RP D+LVGQ + +L +A+ + + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHQKYRPQRLDQLVGQEAIATTLSNALVYRRIATAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + +PCG C C +SGR+ DV E+D+ + + L++ + P +R+K++
Sbjct: 68 NSDSPTTEPCGKCELCISITSGRALDVIEIDAASNTGVENIRELIERSKFSPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE ++F++ T + ++ + +SR Q++ F ++ +
Sbjct: 128 VIDECHMLSAAAFNALLKTLEEPQPKLLFILATTDPQRMLTTVISRCQRFDFRRVCPITL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I E I+ A+ +A + GS+RDAE LLDQLSLL I ++ +EL+G +
Sbjct: 188 KGHLVFIADREDISISVEAISLVAKSAQGSLRDAENLLDQLSLLQGPIEVNSVWELLGEI 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD---ILAGKCLEDC 591
+ ELL+L +S + R R L +P+ ++ L +++ D ++ D
Sbjct: 248 PEQELLELGSALISEKPLTILERCRCLFDRGREPILILQGLTSILRDLVLLIEAPDRPDL 307
Query: 592 SEARKNFFGKHTSEADMQKLSRALKI---LSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
S F+ A KLS+ LK L +E +LR S WL V LL L + +S
Sbjct: 308 SNISLQFWSILQELASDVKLSKLLKWQSKLKGSEFELRQSAQPRLWLEVILLGLLADSNS 367
Query: 649 L 649
L
Sbjct: 368 L 368
>gi|416396022|ref|ZP_11686398.1| DNA polymerase III subunits gamma and Tau [Crocosphaera watsonii WH
0003]
gi|357263028|gb|EHJ12088.1| DNA polymerase III subunits gamma and Tau [Crocosphaera watsonii WH
0003]
Length = 687
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 195/355 (54%), Gaps = 10/355 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLNNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
++E PCG C C + G + DV E+D+ D + +++ + P R+K++
Sbjct: 67 AVEAPTASPCGECEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 126
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE + V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 127 VIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPLEAM 186
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
S L I +E I + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 187 VSHLTVIAQKENIEIEPEALTLVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLVGAV 246
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ +LL LL A++S+ VI + R+LM +P+ ++ LA +++L K + S+
Sbjct: 247 PERDLLSLLK-AINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIAKTAPERSD 305
Query: 594 ---ARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ +EA+ + + R + L E+E QL+ + WL V LL L
Sbjct: 306 LVAVTSTTWDDLCTEANQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGL 360
>gi|260912516|ref|ZP_05919050.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral
taxon 472 str. F0295]
gi|260633365|gb|EEX51521.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella sp. oral
taxon 472 str. F0295]
Length = 608
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 191/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NCL+
Sbjct: 8 ARKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
E + C C C F+ RS ++ E+D+ N + + +LM +PP ++K+FII
Sbjct: 68 PTETGEACNHCESCQAFNDQRSYNIFELDAASNNSVENIKTLMDQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPGIID 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+R+ E + +++ AL IA K++G +RDA + DQ + + +T + ++
Sbjct: 188 HLKRVAENEGVAYEEEALAVIAEKADGGMRDALSIFDQAASFAQGNLTYDSVIADLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++++LAL + S+ ++ +++ D L++ LA + ++L K L +
Sbjct: 248 SDNYFNIINLALENKVSDIMVLVNDIIVKGFDAGNLVNGLATHVRNVLMAKDESTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + + + L +AL+++++ + R S ++ + + L+Q++
Sbjct: 308 VSARQRERFKEQAQKCPTKFLYKALQVMNQCDIHYRASSNKRLLVELTLIQVA 360
>gi|167759644|ref|ZP_02431771.1| hypothetical protein CLOSCI_02002 [Clostridium scindens ATCC 35704]
gi|167662770|gb|EDS06900.1| DNA polymerase III, subunit gamma and tau [Clostridium scindens
ATCC 35704]
Length = 523
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 188/355 (52%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ F+++ GQ+ +V++L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPDEFEDVKGQDAIVKTLKNQIKAERIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C ++G S +V E+D+ N D + + + P R+K++I
Sbjct: 65 EHPVDGSPCGECAMCRSIAAGTSMNVIEIDAASNNGVDNIREIREEVAYRPTEGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + LSR Q+Y F +I I+
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRISIETIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
RLR + +E ++ A+ +IA ++GS+RD+ LLDQ +G+K+T E++G
Sbjct: 185 DRLRELVDKEGWEVEEKAVRYIAKMADGSMRDSLSLLDQCVAFYIGEKLTYDHVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V + LL LS D ++ EL+ + QL S + ++L K +ED
Sbjct: 245 VDTETFSRLLRELLSMDVHKVIVTVEELVMQGRELSQLASDFTWYLRNLLLVKSSDNMED 304
Query: 591 CSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + EA M L R ++I S+ QL+ + + L V L++L
Sbjct: 305 VLDVSTENLTQLKEEAQMIDNDTLIRYIRIFSDLTNQLKYATQKRVLLEVTLIKL 359
>gi|373461447|ref|ZP_09553187.1| DNA polymerase III, subunit gamma and tau [Prevotella maculosa OT
289]
gi|371952405|gb|EHO70244.1| DNA polymerase III, subunit gamma and tau [Prevotella maculosa OT
289]
Length = 598
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 192/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ+ + +L +A+ + YLF GPRG GKT+ +RIFA A+NC +
Sbjct: 8 ARKYRPMTFDSVVGQHALTTTLKNAVKSRKLAHAYLFCGPRGVGKTTCARIFAKAINCEN 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
ED + C C C F+ RS ++ E+D+ N + + SLM+ +PP R+K+FII
Sbjct: 68 PSEDGEACNACESCKAFNEQRSYNIFELDAASNNSVENIKSLMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ G+ +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNTIA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I +++ AL IA K++G +RDA + DQ S IT E + ++
Sbjct: 188 HLKTVADKEGITYEEEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++D AL + S+ ++ +++ D L++ LA + ++L + L +
Sbjct: 248 ADNYFQIVDDALQNKVSDIMLLFNNVLKKGFDGGNLVTGLAAHVRNVLMARDEQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + + L +ALK+L++ + + S ++ + + L+Q++
Sbjct: 308 TSQQQREKYHEQAKKCPVNFLYQALKVLNQCDINYKQSSNKRLLVELTLIQMA 360
>gi|317498613|ref|ZP_07956906.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
gi|291558496|emb|CBL37296.1| DNA polymerase III, subunits gamma and tau [butyrate-producing
bacterium SSC/2]
gi|316894100|gb|EFV16289.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 534
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 196/366 (53%), Gaps = 10/366 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F E+ GQ+ +V++L + + G + YLF G RGTGKT+ ++I A A+NC
Sbjct: 5 ALYRKFRPTRFSEVKGQDHIVKTLENQMRTGRIGHAYLFCGTRGTGKTTVAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PCG C C + G S +V E+D+ N D + + + P + ++K++I
Sbjct: 65 EHPVDGEPCGECEVCKAIAEGSSMNVIEIDAASNNGVDNIREIKEQVQYSPATGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q+Y F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRITAATIK 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+L + +E ++ + AL+++A ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 KQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLLDQCIAFYLGEKLTYDNVLEVLGT 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGKCLE 589
V DLLD+ LS D + + ++ R + Q I+ L NL++ + G E
Sbjct: 245 VDIQVYSDLLDMILSQDINGVMDLLEDVARQGREWSQFITDFLWYLRNLLL-VGQGNAAE 303
Query: 590 DCSEARKN---FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ E + + + + L R ++ILSE +++R + + + V ++++ +
Sbjct: 304 EALEVSTDQLKLLQEKAQQVEENTLIRYIRILSELLERIRYATSKRVLVEVEMMKMCRPQ 363
Query: 647 SSLDLN 652
D N
Sbjct: 364 MEADTN 369
>gi|170078311|ref|YP_001734949.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC
7002]
gi|169885980|gb|ACA99693.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC
7002]
Length = 742
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 193/355 (54%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
L K+RP F +LVGQ + +L +A+ + + YLF GPRGTGKTS++RI A +LNC
Sbjct: 5 PLHHKYRPQTFAQLVGQEAIATTLSNALEQRRIAPAYLFSGPRGTGKTSSARILAKSLNC 64
Query: 356 LSLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
L+ P CG C C ++G + DV E+D+ D + L++ + P R+K+
Sbjct: 65 LNAAQPTPHPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIERSQFAPVQCRYKV 124
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
++IDEC +L + +L +LE HVVFV+ T + ++ + +SR Q++ + +I
Sbjct: 125 YVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDYRRIPLDA 184
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
+ + LR+I E I+ ++ IA +NG +RDAE LLDQLSLL +IT ++L+G
Sbjct: 185 MVAHLRKIAHLENIDIPLESVTLIAQIANGGLRDAESLLDQLSLLSGEITPDKVWDLVGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
V + +LL LL + S+D + + R L+ +P+ ++ LA+ +++L K
Sbjct: 245 VPERDLLQLLQVIHSNDPEAVIQQCRSLLNRGREPLVVLQNLASFYLNLLIAKTAPQRGD 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
L ++ + ++ ++ + + + L E+E QL+ + WL + LL L
Sbjct: 305 LIAVTQPTWEILCQEANQWELSTILQGQQHLKESEYQLKNTTQPRLWLEITLLGL 359
>gi|88809301|ref|ZP_01124809.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805]
gi|88786520|gb|EAR17679.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805]
Length = 587
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 180/341 (52%), Gaps = 10/341 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP D+LVGQ + +L A+ G + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRLDQLVGQEAIAATLGHALRSGRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ E +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 NSEGPTPEPCGHCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E I AL +A ++ G +RDAE LLDQLSLL I ++L+G V
Sbjct: 188 ERHLTWIAEQETIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIQADAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ ELL L+ A+SS ++ A R L+ D ++ LA ++ D++ D E
Sbjct: 248 PEQELLALVT-AMSSGEPVALLEATRTLLDRGRDAGSVLQGLAGILRDLVLMAAAPDRPE 306
Query: 594 ---ARKNFFGKHTSEADMQKLSRALKILSE---TEKQLRMS 628
F + A SR L+ S+ TE+QLR S
Sbjct: 307 LTSVSPQFRDQLPELAKAIGRSRLLQWQSQLRGTEQQLRQS 347
>gi|332980764|ref|YP_004462205.1| DNA polymerase III subunits gamma and tau [Mahella australiensis
50-1 BON]
gi|332698442|gb|AEE95383.1| DNA polymerase III, subunits gamma and tau [Mahella australiensis
50-1 BON]
Length = 549
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 115/364 (31%), Positives = 187/364 (51%), Gaps = 9/364 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ +K+RP FD++ GQ VVR+L I + YLF G RGTGKTS ++I A A+NC
Sbjct: 5 AIYRKWRPQTFDDVYGQPAVVRTLRHQIMNHRIAHAYLFCGSRGTGKTSTAKIMARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LS D PCG C C S + D+ E+D+ N D + L + PP R+KI+I
Sbjct: 65 LSPVDGNPCGRCDVCTKLSDESNMDIIEIDAASNNGVDEIRDLREKVKYPPTIGRYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E +LP + LSR Q+Y F +I + D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPEHVIFILATTEPHRLPATILSRCQRYDFRRISEQDMV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I + + AL IA + G++RDA +LDQ LS I + +++G
Sbjct: 185 ERMRVILTATGAHAEDEALQLIARSAQGAMRDALSMLDQALSFCDGNIGYTDVLDMLGAS 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-CLED--- 590
D + L+D ++ D + + + D L+ ++A + D++ K C +
Sbjct: 245 GTDFVAGLVDAVIAGDDGGALSLIDQAVDQGRDLTALVREIAWYVRDLMIVKSCRQPETM 304
Query: 591 --CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--SSE 646
S+ + + + + D +KL + ILS T+ QLR + + + ++L E
Sbjct: 305 IWASQHQMDVYKAQADKLDERKLIAYMDILSVTDNQLRFAAQPRITVEMMAIKLCHLREE 364
Query: 647 SSLD 650
SS+D
Sbjct: 365 SSMD 368
>gi|374294621|ref|YP_005044812.1| DNA polymerase III, subunit gamma/tau [Clostridium clariflavum DSM
19732]
gi|359824115|gb|AEV66888.1| DNA polymerase III, subunit gamma/tau [Clostridium clariflavum DSM
19732]
Length = 552
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 195/371 (52%), Gaps = 9/371 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++V Q VV++L ++I G + YLF G RGTGKT+ ++IF+ A+NC
Sbjct: 5 ALYRKWRPMVFEDVVEQEHVVKTLKNSILAGRIAHAYLFCGTRGTGKTTMAKIFSRAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D PC C C +G DV E+D+ N D V + P +R+K++I
Sbjct: 65 LNSTDGDPCNECEICKGILNGSLLDVIEIDAASNNSVDNVREIRDEVVYAPSKARYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E KLP + LSR Q++ F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSHVVFILATTEPHKLPATILSRCQRFDFRRIPVESIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R I ++ ++ L IA S+G++RDA +LDQ +SL K +T ++GIV
Sbjct: 185 KRIRYIAENSGVSIEEEGLRLIARMSDGALRDAISILDQCISLGNKHLTYEDVLSIVGIV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDC 591
++ + D++D + + + L+ + Q +S L ++L K E+
Sbjct: 245 NNTFVADVVDAINAKEVDRVLQFINVLVMDGKNITQFVSDLILYYRNLLICSTSKNPEEI 304
Query: 592 SEARKNFFGKHTSE---ADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
EA K+ + + +++ +K LS E +R S H L VAL++L E+
Sbjct: 305 VEASKDMIERMKEQCKSLSHLEITSIIKELSALENTMRWSNHARILLEVALIKL--CETK 362
Query: 649 LDLNDSKLCLR 659
+DLND+ + R
Sbjct: 363 VDLNDAGMTER 373
>gi|282852745|ref|ZP_06262087.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri
224-1]
gi|282556487|gb|EFB62107.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri
224-1]
Length = 602
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 190/352 (53%), Gaps = 3/352 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD +V Q + +L +AI RG ++ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDGVVDQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R+ I +E I+F++ AL+ IA ++G +RD+ +LDQ LS K+ A ++ G
Sbjct: 185 ARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKITGYA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ +L L TS L++ ++ +L +L + +L K ++ +
Sbjct: 245 AQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISLTVKGMLVVKSNKEATF 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+ + ++ +K ++ + LR + Q L V ++Q++ +
Sbjct: 305 LTKD-YATELAKIPEEKFYNLVQAANTALNDLRYTNQQQIPLDVFVVQVTQA 355
>gi|167767544|ref|ZP_02439597.1| hypothetical protein CLOSS21_02063 [Clostridium sp. SS2/1]
gi|429763062|ref|ZP_19295425.1| DNA polymerase III, subunit gamma and tau [Anaerostipes hadrus DSM
3319]
gi|167710836|gb|EDS21415.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. SS2/1]
gi|429179850|gb|EKY21085.1| DNA polymerase III, subunit gamma and tau [Anaerostipes hadrus DSM
3319]
Length = 531
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 196/366 (53%), Gaps = 10/366 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F E+ GQ+ +V++L + + G + YLF G RGTGKT+ ++I A A+NC
Sbjct: 2 ALYRKFRPTRFSEVKGQDHIVKTLENQMRTGRIGHAYLFCGTRGTGKTTVAKILAKAVNC 61
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PCG C C + G S +V E+D+ N D + + + P + ++K++I
Sbjct: 62 EHPVDGEPCGECEVCKAIAEGSSMNVIEIDAASNNGVDNIREIKEQVQYSPATGKYKVYI 121
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q+Y F +I I
Sbjct: 122 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRITAATIK 181
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+L + +E ++ + AL+++A ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 182 KQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLLDQCIAFYLGEKLTYDNVLEVLGT 241
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGKCLE 589
V DLLD+ LS D + + ++ R + Q I+ L NL++ + G E
Sbjct: 242 VDIQVYSDLLDMILSQDINGVMDLLEDVARQGREWSQFITDFLWYLRNLLL-VGQGNAAE 300
Query: 590 DCSEARKN---FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ E + + + + L R ++ILSE +++R + + + V ++++ +
Sbjct: 301 EALEVSTDQLKLLQEKAQQVEENTLIRYIRILSELLERIRYATSKRVLVEVEMMKMCRPQ 360
Query: 647 SSLDLN 652
D N
Sbjct: 361 MEADTN 366
>gi|399889484|ref|ZP_10775361.1| DNA polymerase III subunits gamma and tau [Clostridium arbusti
SL206]
Length = 539
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 199/358 (55%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQN V +L + + + YL G RGTGKTS ++I + A+NC
Sbjct: 5 ALYREWRPKTFKEVVGQNHVTITLRNQVKDSRIAHAYLLCGTRGTGKTSTAKILSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C +SG + DV E+D+ N + + ++++ PP SRFK++I
Sbjct: 65 LNPQDGEPCNECEMCKKINSGLAIDVTELDAASHNGVEDIRNIIEDVQYPPHESRFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L L +LE ++V+F++ T + +LP + LSR Q++ F +IK D+
Sbjct: 125 IDEVHMLSMGAVNAFLKTLEEPPKNVIFILATTDPQRLPITILSRCQRFDFKRIKKYDMF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR I ++ + D +L+ IA S+G++RDA +LDQ +S K+ ++G+V
Sbjct: 185 ERLREIVSKQGVFADDESLNLIARISDGAMRDALSILDQAISTGNGKVQYDDIINMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKID----PMQLISQLANLIMDILAGKCLE- 589
+++ L+++ + + N + +++ S D LI + NL+M ++ E
Sbjct: 245 TNEYLINITSALIEKNIENAMKTVDDIVFSGKDINIFIKDLIIHMRNLMMVKISKNPEEI 304
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S+ + + + ++++ R +KIL ETE++ + SK +L +A++++ E
Sbjct: 305 LDMSQENIKLIKEQSEKIRVEEIMRCIKILQETEEESKWSKQSRIYLELAVIKMCKIE 362
>gi|400290658|ref|ZP_10792685.1| DNA polymerase III subunits gamma and tau [Streptococcus ratti FA-1
= DSM 20564]
gi|399921449|gb|EJN94266.1| DNA polymerase III subunits gamma and tau [Streptococcus ratti FA-1
= DSM 20564]
Length = 555
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 165/290 (56%), Gaps = 2/290 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L A++ G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVATTLKQAVASGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQKDGEPCNHCDICQDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + +VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSAGAFNALLKTLEEPTGNVVFILATTELHKIPATILSRVQRFEFKTIKTKAIQ 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKK-ITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL + ++L +A E+ G
Sbjct: 184 EHLAEILQKEEVSFDEEALSLIAKRAEGGMRDALSILDQALSLTADQHVSLEIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+S L + L+ DTS + + S + + L N + DIL
Sbjct: 244 ISLSALDHYVADLLNHDTSQALNDLEIIFDSGKSMSRFATDLLNYLRDIL 293
>gi|355574933|ref|ZP_09044569.1| hypothetical protein HMPREF1008_00546 [Olsenella sp. oral taxon 809
str. F0356]
gi|354818409|gb|EHF02901.1| hypothetical protein HMPREF1008_00546 [Olsenella sp. oral taxon 809
str. F0356]
Length = 806
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 11/367 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F ++VGQ VV +L A+ G + YLF GPRGTGKT+ +R+ A AL C
Sbjct: 3 SLYRKYRPQTFADVVGQQHVVGTLERAVLEGRQSHAYLFCGPRGTGKTTMARLLAKALMC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRV-GSLMKSAFLPPFSSRFKIF 414
Q P G C +C L ++G DV E+D+ D V ++ S P R+K++
Sbjct: 63 ERGAGQLPDGSCEQCRLIAAGEHPDVYELDAASRTGVDNVREEIINSVGYAPVRGRYKLY 122
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE HVVFV+ T + K+P + LSR Q++ F I DI
Sbjct: 123 IIDEVHMLTTAAFNALLKTLEEPPSHVVFVLCTTDPQKIPATILSRVQRFDFHAIAHEDI 182
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGI 533
+L+++C +E +D AAL+ + + G +RDA L+QLS+ G +++ A +L+G
Sbjct: 183 LHQLQKVCQQEGFGYDPAALELVVRHARGGMRDALSTLEQLSVFGGGQVSAEAARDLLGE 242
Query: 534 VSDDELLDLLDLALS-SDTSNTVIRARELMRSKIDPMQLISQLANLIMD------ILAGK 586
VS +L LAL+ D + L+ + D +Q +LA + D + A
Sbjct: 243 VSGAQLAQ-TSLALARRDVAALFGEVATLVDAGRDLLQFSRELAARLRDCYVVAAVGARL 301
Query: 587 CLEDCSEARKNFFGKHTSE-ADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ D SE + + +LSRAL I+ + +++R + +Q L VAL +++
Sbjct: 302 GVVDLSEDELRALDEEAAAFGSPDRLSRALGIMGDASREMRTATNQRLVLEVALTRIARP 361
Query: 646 ESSLDLN 652
+S L L+
Sbjct: 362 KSDLTLD 368
>gi|402307093|ref|ZP_10826124.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. MSX73]
gi|400379219|gb|EJP32065.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. MSX73]
Length = 615
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 190/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 7 ARKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 66
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+D + C C C F+ RS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 67 PHDDGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGRYKVFII 126
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+FV+ T E K+ + LSR Q Y F ++ + +
Sbjct: 127 DEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQIYDFERMTVPNTIA 186
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I +D+ AL+ IA K++G +RDA + DQ S IT + E + ++
Sbjct: 187 HLKMVADKEGITYDEQALEVIAEKADGGMRDALSIFDQAASFCQGDITYAKVIEDLNVLD 246
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++DLAL + S+ ++ ++ D L++ LA ++L K L +
Sbjct: 247 VDNYFKMIDLALQNKVSDLMVLLNGVLEKGFDGGNLVNGLAAHARNVLMAKDESTLPLLE 306
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE +K + + + +ALKI+++ + R S ++ + + L+Q++
Sbjct: 307 VSEQQKLRYKEQARNCKPDFIYKALKIMNQCDINYRQSSNKRLLVELTLIQVA 359
>gi|357636357|ref|ZP_09134232.1| DNA polymerase III, subunit gamma and tau [Streptococcus macacae
NCTC 11558]
gi|357584811|gb|EHJ52014.1| DNA polymerase III, subunit gamma and tau [Streptococcus macacae
NCTC 11558]
Length = 556
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 148/242 (61%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ + +L A++ G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEIAATTLKQAVASGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQLDGEPCNNCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRANYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I+
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTAAIS 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
L I +E I+FD AAL IA ++ G +RDA +LDQ LSL G +++L +A E+ G
Sbjct: 184 QHLADILQKEGISFDDAALRLIAKQAEGGMRDALSILDQTLSLTGDHELSLEMAEEMTGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|332710811|ref|ZP_08430748.1| DNA polymerase III, subunits gamma and tau [Moorea producens 3L]
gi|332350364|gb|EGJ29967.1| DNA polymerase III, subunits gamma and tau [Moorea producens 3L]
Length = 763
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 202/373 (54%), Gaps = 17/373 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ+ + ++L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQRFADLVGQDAIAKTLTNAIESERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
L PCG C C + G S DV E+D+ D + +++ A P R+K++
Sbjct: 66 KTDLPTPFPCGECHVCREIAGGLSLDVTEMDAASHTGVDNIREIIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + ++L +LE + VVF++ T + ++ + +SR Q++ F +I +
Sbjct: 126 VIDECHMLSTAAFNSLLKTLEEPPERVVFILATTDPQRVLPTIISRCQRFDFRRIPLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
S L+ I V+E I AL +A + G +RDAE LLDQLSLL +++T+ ++L+G +
Sbjct: 186 VSHLKDIAVKENITITPDALTLVAQGAQGGLRDAESLLDQLSLLDEQVTVEQVWDLVGAL 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +LL LL+ SS+ + + L+ +P+ ++ LA+ D+L K + A
Sbjct: 246 PEQDLLALLNAIASSEAVAVLEQCGYLIDRGREPLVILQNLASFYRDLLIAK----TAPA 301
Query: 595 RKNFFG----------KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ-LS 643
R N + + D++ + R + L ++E Q++ + WL V L+ L
Sbjct: 302 RNNLSAITLPTWQKLCELAKQLDVESILRGQQHLKDSEIQIKNTTQPRLWLEVTLMGLLP 361
Query: 644 SSESSLDLNDSKL 656
++ +S + SKL
Sbjct: 362 AALASQSVETSKL 374
>gi|423318231|ref|ZP_17296128.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
FB049-03]
gi|405596720|gb|EKB70053.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
FB049-03]
Length = 601
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 185/354 (52%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKEDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS + + A ++ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + +L L+ D + ++ + ++ ++ +L +L K E+ E
Sbjct: 245 DRENIEKILLALLNQDAGQALQFTQDELAKGASSKNILDEIIDLTTKSLLIVKTDENKQE 304
Query: 594 A--RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+F K S R + + + LR + Q L V L++ SS+
Sbjct: 305 TFLTKDFIEKIKS-VSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEASST 357
>gi|414160258|ref|ZP_11416528.1| DNA polymerase III, subunit gamma and tau [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878604|gb|EKS26480.1| DNA polymerase III, subunit gamma and tau [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 576
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 184/351 (52%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ V ++L +AI++G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFSDVVGQEHVTKTLRNAIAKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 PNSVDGEPCNECDICKSITQGSNSDVIEIDAASNNGVDEIRNIRDKVKYAPSQSKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR + + I FD+ A+ FIA S G +RDA ++DQ G + +TL A + G V
Sbjct: 185 DRLRYVAESQHIEFDEEAIAFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+ L LL+ + + R + + + +LI+ L + D + K ++ +E
Sbjct: 245 DEASLNALLNDVANGEVKAAFARYHQFIEDGKEVNRLINDLIYFVRDTIMNKTAQNQTEY 304
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
A F D L + + ++++T +R S +Q V L++L+
Sbjct: 305 DALMGF--------DFDTLYKMIDLINDTLVSVRFSVNQNVHFEVLLVKLA 347
>gi|315607781|ref|ZP_07882774.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC
33574]
gi|315250250|gb|EFU30246.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella buccae ATCC
33574]
Length = 615
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 190/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 7 ARKYRPMSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 66
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+D + C C C F+ RS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 67 PHDDGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKALMEQTRIPPQVGRYKVFII 126
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+FV+ T E K+ + LSR Q Y F ++ + +
Sbjct: 127 DEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQIYDFERMTVPNTIA 186
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I +D+ AL+ IA K++G +RDA + DQ S IT + E + ++
Sbjct: 187 HLKMVADKEGITYDEQALEVIAEKADGGMRDALSIFDQAASFCQGDITYAKVIEDLNVLD 246
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++DLAL + S+ ++ ++ D L++ LA ++L K L +
Sbjct: 247 VDNYFKMIDLALQNKVSDLMVLLNGVLEKGFDGGNLVNGLAAHARNVLMAKDESTLPLLE 306
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE +K + + + +ALKI+++ + R S ++ + + L+Q++
Sbjct: 307 VSEQQKLRYKEQARNCKPDFIYKALKIMNQCDINYRQSSNKRLLVELTLIQVA 359
>gi|354807449|ref|ZP_09040917.1| DNA polymerase III, subunits gamma and tau [Lactobacillus curvatus
CRL 705]
gi|354514099|gb|EHE86078.1| DNA polymerase III, subunits gamma and tau [Lactobacillus curvatus
CRL 705]
Length = 572
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 195/359 (54%), Gaps = 6/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD+++GQ + ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDDVIGQETMAQTLKNAIMTHQTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC C C ++G DV E+D+ N + + + A P + +KI+I
Sbjct: 65 HYQKDGEPCNECETCRAITAGALNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E+ K+P + +SR+Q+++F +I D+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPTNVVFILATTEVHKVPATIISRTQRFNFKRITAADLF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ + +D AAL IA + G +RDA +LDQ LS +TL A ++ G +
Sbjct: 185 KRMAYILDQKEMTYDPAALKVIAKAAEGGMRDALSILDQVLSFSDNHVTLDNALDVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
++ L D + + + ++++ D + + L + D+L + E +
Sbjct: 245 TEALLADYVQTIQDNAPKQALQLLQQILAEGKDAQRFVEDLIEYVRDLLLYQQAPELVAA 304
Query: 594 ARKNFFGKH----TSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + +H ++ +L + IL+ET++QLR + H +L VA ++L+ +++
Sbjct: 305 SEMDLLDEHFKALSAAMPADRLYGVIDILNETQQQLRFTNHPEIYLEVATVRLTQVQTA 363
>gi|417002232|ref|ZP_11941621.1| DNA polymerase III, subunit gamma and tau [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479373|gb|EGC82469.1| DNA polymerase III, subunit gamma and tau [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 621
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 200/381 (52%), Gaps = 19/381 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FDE++GQ+ VV L + + + Y+F G RG GKT+ ++IFA A+NC
Sbjct: 4 ALYRQYRPKTFDEVLGQDRVVNVLKNQVKNNNFSHAYIFAGERGCGKTTCAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L +D PC C C + D+ E+D+ R D + +L + PP ++K++I
Sbjct: 64 LHPKDGSPCLECENCKAIDDESTIDIIEMDAASNRRIDDIRNLKDNVIYPPNKLKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L +E H+VF++ T E+DK+P + LSR Q + F KI I
Sbjct: 124 IDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDKIPNTILSRVQNFEFNKIDSSKIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
++ I ++ I + A+D I K+NG++RDA +LDQ +S K +S EL+G+V
Sbjct: 184 EQINIILDDKDIKMENEAIDLIIRKANGAMRDALSILDQVISYDSKDFKISDVEELLGVV 243
Query: 535 SDDELLDLLDLALSSDTSNT------VIRARELMRSKIDPMQLISQLANLIMDILAGKCL 588
+ D+ L S + N + RE +S D ++ L + DI+ K
Sbjct: 244 ---DFYDIDKLTSSIFSFNQKEALSYIFSLRENNKSNKD---ILDSLTYYLRDIMVYKMT 297
Query: 589 EDCS----EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
ED S + R +F K + D+++L L ILSE +LR S++ + + ++L +
Sbjct: 298 EDESNFENKERLDFIKKSSENIDIERLLDMLDILSEYSNKLRYSENTDLIIELLAVRLIN 357
Query: 645 SE--SSLDLNDSKLCLRYAHD 663
++ SSLD L +R A D
Sbjct: 358 TKDISSLDSRIRNLEMRNADD 378
>gi|433653778|ref|YP_007297486.1| DNA polymerase III, subunit gamma/tau [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433291967|gb|AGB17789.1| DNA polymerase III, subunit gamma/tau [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 533
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 192/361 (53%), Gaps = 4/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F E++GQN +VR+L + I G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 SLYRKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAYLFCGTRGTGKTSVAKIFAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C+ C ++ D+ E+D+ N D V L + P ++K++I
Sbjct: 64 PNSVEGEPCNRCQICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYAPSICKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L G + +L +LE H +F++ T E +K+P + LSR Q++ F +I I+
Sbjct: 124 IDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQRFDFKRIPSRVIS 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+++I + I+ + +A+ IA NGS+RDA +L+Q +T +++G V+
Sbjct: 184 QNIKKIAKDSNISIENSAIAMIARHGNGSMRDAISILEQCVSYNDVLTYDDVCDILGTVN 243
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL----EDC 591
DD L L+ + + + +LM ID LI + + + D++ K E+
Sbjct: 244 DDTLYTLVKSINDRNAKEVINQIDKLMLYGIDVSNLIKAMLSFLRDVVIYKTCGTESEEI 303
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
E N SE DM LS A++ L + + ++R ++ + +L+L + E S D+
Sbjct: 304 LETEINDKILKASEFDMSFLSNAIEKLIDLQGKIRYAQSPRILFEITVLKLINPEISPDI 363
Query: 652 N 652
+
Sbjct: 364 D 364
>gi|78183642|ref|YP_376076.1| DNA-directed DNA polymerase [Synechococcus sp. CC9902]
gi|78167936|gb|ABB25033.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9902]
Length = 625
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 165/298 (55%), Gaps = 6/298 (2%)
Query: 288 STYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASR 347
STY L K+RP FD+LVGQ + +L +A++ + YLF GPRGTGKTS++R
Sbjct: 3 STYQ----PLHHKYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSAR 58
Query: 348 IFAAALNCLSLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP 405
I A +LNC + + +PCG C C +SG + DV E+D+ D + L++ +
Sbjct: 59 ILARSLNCQNSDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIERSRFA 118
Query: 406 PFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYH 465
P +R+K++++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++
Sbjct: 119 PVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFD 178
Query: 466 FPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLS 525
F +I + L I +E+I A+ +A +S G +RDAE LLDQLSLL I +
Sbjct: 179 FRRIPLDALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEAN 238
Query: 526 LAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
++L+G V + ELL L SS+ + R L+ DP ++ LA ++ D++
Sbjct: 239 AVWDLLGAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGAVLQGLAGVLRDLV 296
>gi|123967081|ref|YP_001012162.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9515]
gi|123201447|gb|ABM73055.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9515]
Length = 595
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 193/355 (54%), Gaps = 14/355 (3%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
QK+RP+ DELVGQ + +L A+ + YLF+GPRGTGKTS++RIFA +LNCLS
Sbjct: 10 QKYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSLNCLSC 69
Query: 359 ED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
E PCG C C + G + D+ E+D+ D + ++ A P +R+K+++I
Sbjct: 70 EQPTANPCGKCELCKQIADGNALDIIEIDAASNTGVDNIREIIDGARFTPTQARWKVYVI 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DEC +L +L ++E + VVF++ T +++ + SR QK+ F +I I
Sbjct: 130 DECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRISSNTIFH 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L I +E+I F+ AL IA +SNG +RDA+ LLDQLSLL +T L+G VS+
Sbjct: 190 NLSEIANKESIKFEDQALKLIAKRSNGGMRDAQSLLDQLSLLPNGVTTKNVQNLLGEVSE 249
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
++L++L++ + ++ + +I +L S +P +++ L N+ D+L + S+
Sbjct: 250 NDLINLINALIYNEPESLLISCNQLYDSGNEPHEILVGLLNITRDLLLKTLNNNYSDI-- 307
Query: 597 NFFGKHTSEADMQKLSR---ALKI------LSETEKQLRMSKHQTTWLTVALLQL 642
F+ + ++ K S+ ++I L + Q++ S + WL V L L
Sbjct: 308 -FYTSIDFQNELNKFSKNISKMRIIDWHNKLKNIDYQIKTSDNPKLWLEVHLTSL 361
>gi|325288352|ref|YP_004264533.1| DNA polymerase III tau subunit [Syntrophobotulus glycolicus DSM
8271]
gi|324963753|gb|ADY54532.1| DNA polymerase III, tau subunit [Syntrophobotulus glycolicus DSM
8271]
Length = 531
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 181/349 (51%), Gaps = 3/349 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ V R L +A+ V YLF GPRGTGKT+A++I A ALNC
Sbjct: 5 ALYREWRPRRFQDLVGQEHVKRILTNALISNKVAHAYLFSGPRGTGKTTAAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++PC C C G++ DV E+D+ D + +L ++ L S +K++I
Sbjct: 65 AFRRGEEPCNECDSCQGIDQGQAMDVLEIDAASNRGIDEIRNLRENVKLAATSGEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE VVF+M T E K+P + LSR Q++ F +I I
Sbjct: 125 IDEVHMLTAEAFNALLKTLEEPPTGVVFIMATTEPHKVPLTILSRVQRFEFHRISPEMIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RL+ +C + AL IA+K+ G +RDA +LDQ L ITL +E++G+V
Sbjct: 185 QRLQEVCDSLDRKIAEEALMVIASKAEGGLRDALSILDQCLLHEGDITLEFVFEILGVVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDCS 592
+ DLL+ L D + + + + DP Q+I +L + L AG S
Sbjct: 245 ESFSADLLEAILGEDCGLVLTKLNDAVAKGRDPRQIIRELLEYLRQGLLFGAGGREPMLS 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
KN + +A ++K+ + +L + E +LR + + + L+Q
Sbjct: 305 PQMKNRLTQQVGQAGIEKILALINVLLKGEGELRAAPNARLSAEMVLVQ 353
>gi|336053584|ref|YP_004561871.1| DNA polymerase III [Lactobacillus kefiranofaciens ZW3]
gi|333956961|gb|AEG39769.1| DNA polymerase III [Lactobacillus kefiranofaciens ZW3]
Length = 597
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 190/360 (52%), Gaps = 13/360 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNKCANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++VVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEYVVFILATTELQKVPATIISRTQRYNFKRISKSDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS + + + A ++ G
Sbjct: 185 KRMKYILEQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYNDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + + +L L+ D + + A++ + ++ +L +L L ++ E
Sbjct: 245 ARENIEQILLALLNQDAGSALKLAQKELDQGASSKNILDELIDLATKSLM--LIKTGDET 302
Query: 595 RKNFFG-------KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+ F KH A +L + + ++ LR + Q L V L++ SS ++
Sbjct: 303 KDTFLSADFITKIKHIPTATYYRL---ITLANKALNDLRYTNQQQIPLEVFLVEASSPQA 359
>gi|313673332|ref|YP_004051443.1| DNA polymerase III subunits gamma/tau [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940088|gb|ADR19280.1| DNA polymerase III, subunits gamma and tau [Calditerrivibrio
nitroreducens DSM 19672]
Length = 529
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 183/336 (54%), Gaps = 5/336 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L++K+RP FDE+VGQ VV++L +AI G ++ YLF GPRG GKT+A+R+FA A+NC
Sbjct: 6 ALARKYRPQNFDEIVGQEFVVKTLKNAIELGRISHAYLFTGPRGIGKTTAARVFAKAVNC 65
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ PC C C ++G S DV E+D + + ++ ++ + P ++++K++I
Sbjct: 66 LNPIGVNPCNQCSNCMEINNGTSVDVIEIDGASNRKVEEARNIRENVRILPINNKYKVYI 125
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +V+F++ T + K+P + LSR QKY F KI + +
Sbjct: 126 IDEVHMLTEEAFNALLKTLEEPPDYVIFILATTDAHKIPMTILSRCQKYDFKKIPNNYMR 185
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIV 534
+ L I +E I+ D +L+ I S+G +RDA L+DQL + G IT E++ +
Sbjct: 186 NYLLSIMEKEGISCDNDSLNLIIRNSDGCMRDALSLIDQLVAFTGGNITYENTSEILDLS 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPM----QLISQLANLIMDILAGKCLED 590
D+ + ++ DT+N E R ID I NL+ + G +
Sbjct: 246 EQKLANDIFEGIINGDTNNLFDLIDEFSRKGIDYQFALETFIVHTRNLLHGLTGGFSDKT 305
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLR 626
++ +F+ + + ++ KL +I +T ++R
Sbjct: 306 LTKDEIDFYERLKPKLNLNKLFGIFQIFQKTLSEMR 341
>gi|293379950|ref|ZP_06626051.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
214-1]
gi|290923463|gb|EFE00365.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
214-1]
Length = 601
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 185/354 (52%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKEDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS + + A ++ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + +L L+ D + ++ + ++ ++ +L +L K E+ E
Sbjct: 245 DRENIEKILLALLNQDAGQALQFTQDELAKGASSKNILDEIIDLTTKSLLIVKTDENKQE 304
Query: 594 A--RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+F K S R + + + LR + Q L V L++ SS+
Sbjct: 305 TFLTKDFIEKIKS-VSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEASST 357
>gi|423320453|ref|ZP_17298325.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
FB077-07]
gi|405605057|gb|EKB78124.1| DNA polymerase III, subunit gamma and tau [Lactobacillus crispatus
FB077-07]
Length = 601
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 185/354 (52%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKEDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS + + A ++ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + +L L+ D + ++ + ++ ++ +L +L K E+ E
Sbjct: 245 DRENIEKILLALLNQDAGQALQFTQDELAKGASSKNILDEIIDLTTKSLLIVKTDENKQE 304
Query: 594 A--RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+F K S R + + + LR + Q L V L++ SS+
Sbjct: 305 TFLTKDFIEKIKS-VSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEASST 357
>gi|161506948|ref|YP_001576902.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC
4571]
gi|160347937|gb|ABX26611.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC
4571]
Length = 595
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 150/253 (59%), Gaps = 2/253 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS +++ A E+ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKERVNYQDALEITGFA 244
Query: 535 SDDELLDLLDLAL 547
+ + + +L LAL
Sbjct: 245 AKENIEKIL-LAL 256
>gi|196047917|ref|ZP_03115095.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
gi|196021173|gb|EDX59902.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
Length = 543
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 198/355 (55%), Gaps = 6/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP+ F EL+GQN + ++LL+A+ T Y+ GPRGTGKTS ++FA A+NC
Sbjct: 4 ALYRKYRPSSFGELIGQNHIKQTLLNALKSNKFTHAYMLTGPRGTGKTSIGKLFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L + +PC C +C + D+ E+D+ N +++ + + P ++K++I
Sbjct: 64 EHLVNGEPCNDCNQCKQIMNNSHPDILEIDAASNNGVEQIRDIREQVTYAPSVGKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++VVF++ T ++ K+P + +SR Q++ F +I D+
Sbjct: 124 IDEVHMLSIGAFNALLKTLEEPPKNVVFILATTDIHKVPVTIISRCQRFDFRRIGQKDLI 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ + E + ++ AL I+ + G +RDA LLDQ ++ +IT + E++G +
Sbjct: 184 ERMKFVASNEELQIEEEALQLISMLAQGGMRDALSLLDQTVAFASGEITKNDVSEVVGRI 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL----ED 590
S +++ + L+ +T+ + E++ + +P+ ++ L + D++ GK ++
Sbjct: 244 SIEKIEMCVQYLLTRNTTEILSLVNEVILNGKEPIYVLDDLIGYLRDLVIGKAFGVKEDN 303
Query: 591 CSEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ A N F K AD+ ++ ++ L+E +++++ S H L V L+QL +
Sbjct: 304 ITTAIVNEHFNKLLKVADVSQMQHMIRKLTEIKQEMKFSNHAQISLEVGLIQLVT 358
>gi|300726477|ref|ZP_07059923.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14]
gi|299776205|gb|EFI72769.1| DNA polymerase III, gamma and tau subunit [Prevotella bryantii B14]
Length = 614
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 189/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F +VGQ+ + +L +A+ + YLF GPRG GKT+ +RIFA +NC +
Sbjct: 8 ARKYRPMTFASVVGQSALTTTLKNAVKSKKLAHAYLFCGPRGVGKTTCARIFAKVINCEN 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
ED + C C C F+ GRS ++ E+D+ N + + +LM+ +PP ++K+FII
Sbjct: 68 PREDGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKTLMEQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+FV+ T E K+ + LSR Q Y F ++ + +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFVLATTEKHKILPTILSRCQIYDFERMTVPNTIA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L++I +E I ++ AAL+ IA K++G +RDA + DQ++ + IT + ++
Sbjct: 188 HLKQIADKEGITYEDAALEVIAEKADGGMRDALSIFDQVASYSQGNITYEKVIADLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L DLAL + S+ ++ ++ D LIS LA I +++ K L +
Sbjct: 248 SNNYFKLTDLALENKVSDAMLLLNSILEKGFDGSHLISGLAQHIRNVMMAKDEVTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE +K F + + L +AL ++++ + R S + + + L+Q++
Sbjct: 308 TSEQQKVKFKEQAKRCPLPFLYKALDLMNQCDIHYRESSSKRLLVELTLIQIA 360
>gi|295692238|ref|YP_003600848.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus crispatus ST1]
gi|295030344|emb|CBL49823.1| DNA polymerase III, gamma/tau subunit [Lactobacillus crispatus ST1]
Length = 601
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 184/353 (52%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKEDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS + + A ++ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + +L L+ D + ++ + ++ ++ +L +L K E+ E
Sbjct: 245 DRENIEKILLALLNQDAGQALQLTQDELAKGASSKNILDEIIDLTTKSLLIVKTDENKQE 304
Query: 594 A--RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
K+F K S R + + + LR + Q L V L++ SS
Sbjct: 305 TFLTKDFIEKIKS-VSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEASS 356
>gi|256844521|ref|ZP_05550007.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN]
gi|256613599|gb|EEU18802.1| DNA polymerase III [Lactobacillus crispatus 125-2-CHN]
Length = 601
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 184/353 (52%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADQGSMSDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKEDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS + + A ++ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + +L L+ D + ++ + ++ ++ +L +L K E+ E
Sbjct: 245 DRENIEKILLALLNQDAGQALQLTQDELAKGASSKNILDEIIDLTTKSLLIVKTDENKQE 304
Query: 594 A--RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
K+F K S R + + + LR + Q L V L++ SS
Sbjct: 305 TFLTKDFIEKIKS-VSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEASS 356
>gi|332523535|ref|ZP_08399787.1| DNA polymerase III, subunit gamma and tau [Streptococcus porcinus
str. Jelinkova 176]
gi|332314799|gb|EGJ27784.1| DNA polymerase III, subunit gamma and tau [Streptococcus porcinus
str. Jelinkova 176]
Length = 560
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 148/242 (61%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFAEMVGQKVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVDGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE SQ+VVF++ T EL K+P + LSR Q++ F IK DI+
Sbjct: 124 IDEVHMLSSGAFNALLKTLEEPSQNVVFILATTELHKIPATILSRVQRFEFKSIKQNDIS 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
S L I E I + + ALD IA ++ G +RDA +LDQ LSL + ++ L++A E+ G
Sbjct: 184 SHLAWILETEEIPYQEGALDLIARRAEGGMRDALSILDQALSLSSENQVDLAIAEEITGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|406920505|gb|EKD58556.1| hypothetical protein ACD_56C00097G0001 [uncultured bacterium]
Length = 614
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 155/274 (56%), Gaps = 1/274 (0%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
SL +K+RP F +++GQ +V++L +AI G V YLF GPRGTGKT+ +RIFA ++N
Sbjct: 8 LSLYRKYRPVTFADVIGQTHIVQTLSNAIIHGRVGHAYLFTGPRGTGKTTMARIFARSVN 67
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C + + KPC C C S GRS D+ E+D+ D + L ++ PP ++FKI+
Sbjct: 68 CQNPDGAKPCLECDVCKNISEGRSLDIFEIDAASNTGVDNIRELRENVKFPPSQAKFKIY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE HV+F++ T E+ K+P + +SR Q+Y F ++ I
Sbjct: 128 IIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEIHKVPETIISRCQRYDFTRLSLDHI 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGI 533
+L I E + D+ AL+ IA + G +RDAE LL Q ++L KKIT E++G
Sbjct: 188 IEKLSVIAKNEKVEIDKNALEMIAISAEGGMRDAESLLGQVMALEDKKITAKEVEEILGT 247
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKID 567
L ++ LS++ + + EL + D
Sbjct: 248 TQRQSLEAMIAYLLSNNATGAITLVNELSQDGYD 281
>gi|386830121|ref|YP_006236775.1| DNA polymerase III subunit tau [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|417799679|ref|ZP_12446815.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21310]
gi|418656913|ref|ZP_13218698.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-105]
gi|334272994|gb|EGL91346.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21310]
gi|375031998|gb|EHS25256.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-105]
gi|385195513|emb|CCG15122.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 565
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 184/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AAL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDAALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|417015746|ref|ZP_11946931.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
MTCC 5463]
gi|328462873|gb|EGF34722.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
MTCC 5463]
Length = 595
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 150/253 (59%), Gaps = 2/253 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS +++ A E+ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKERVNYQDALEITGFA 244
Query: 535 SDDELLDLLDLAL 547
+ + + +L LAL
Sbjct: 245 AKENIEKIL-LAL 256
>gi|227877637|ref|ZP_03995690.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus
JV-V01]
gi|256849090|ref|ZP_05554523.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US]
gi|262047572|ref|ZP_06020527.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus
MV-3A-US]
gi|312977922|ref|ZP_07789668.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
gi|227862785|gb|EEJ70251.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus
JV-V01]
gi|256713866|gb|EEU28854.1| DNA polymerase III [Lactobacillus crispatus MV-1A-US]
gi|260572148|gb|EEX28713.1| DNA polymerase III, gamma/tau subunits [Lactobacillus crispatus
MV-3A-US]
gi|310895229|gb|EFQ44297.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
Length = 601
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 185/354 (52%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKEDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS + + A ++ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYDDALQITGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCSE 593
+ + +L L+ D + ++ + ++ ++ +L +L K E+ E
Sbjct: 245 DRENIEKILLALLNQDAGQALQFTQDELAKGASSKNILDEIIDLTTKSLLIVKTDENKQE 304
Query: 594 A--RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
K+F K S R + + + LR + Q L V L++ SS+
Sbjct: 305 TFLTKDFIEKIKS-VSTDSYYRLINLANNALNDLRYTNQQQIPLEVFLVEASST 357
>gi|82750185|ref|YP_415926.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
RF122]
gi|82655716|emb|CAI80115.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
RF122]
Length = 565
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 184/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSADGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AAL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDAALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|379727835|ref|YP_005320020.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
DAT561]
gi|376318738|dbj|BAL62525.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
DAT561]
Length = 585
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 193/355 (54%), Gaps = 5/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI++ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDIVGQKAITQTLKNAIAQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C +SG DV E+D+ N + + + P SS +K++I
Sbjct: 65 KHSDDGEPCNICDVCLAITSGSLNDVIEIDAASNNGVEEIRDIRDKVKYAPTSSDYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPPNVVFILATTEPHKIPATIISRTQRFDFRRINVHDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E +I +++ AL +A + G +RDA +LDQ +S KK+T+ A + G +
Sbjct: 185 HHLAFILKETSIEYEEQALYTVAQTAEGGMRDALSILDQIISFNNKKVTVEDARRITGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
+D+ + ++ LS + + + + + +L+ L +L+M A L +
Sbjct: 245 TDEMMDQYIEYCLSGEAEKALESLEGMFSAGKEANRLVENLLLYCRDLLMYQQAPTLLTE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
F + E +K+ ++ILS+T+ +R + + +L VA ++L+++
Sbjct: 305 KVGNLTETFKQLAQETSAEKIYTFIQILSDTQNDIRFTNNTAIYLEVATVKLANT 359
>gi|383753284|ref|YP_005432187.1| putative DNA polymerase III subunit gamma/tau [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381365336|dbj|BAL82164.1| putative DNA polymerase III subunit gamma/tau [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 572
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 186/362 (51%), Gaps = 24/362 (6%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F +LVGQ + R+L +AI+ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRKWRPKTFADLVGQEHISRTLSNAINTGRIGHAYLFSGPRGTGKTSTAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PCG CR C + G S DV E+D+ D + L ++ P R+K++I
Sbjct: 65 EQGPTPEPCGKCRACQKINDGSSMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HVVF++ T E K+P + SR Q+Y F +I +I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRITVEEIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL + E + + ALD IA +++G +RDA LLDQ S L ++T + + +G++
Sbjct: 185 GRLETVTAEMGLQVEPEALDMIAIQADGGLRDALSLLDQCSALADGELTAARVRQTLGLI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLI--------------M 580
+ + L + + + + EL+R + Q++++L+ + M
Sbjct: 245 GHESIYRLTEAIYAHKSQTALAVLAELLRDGKELKQVLTELSLHLRSLMIYQSTGTLEQM 304
Query: 581 DILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL 640
D+ A ++ + + FF A ++KL AL +L+ S + VALL
Sbjct: 305 DLYAEP--DEILQTQGKFFSAEEIMAMIKKLHEAL-------AELKWSPQPRITVEVALL 355
Query: 641 QL 642
L
Sbjct: 356 AL 357
>gi|430824005|ref|ZP_19442572.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0120]
gi|430867318|ref|ZP_19482312.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1574]
gi|431744901|ref|ZP_19533766.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2071]
gi|430441389|gb|ELA51486.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0120]
gi|430550329|gb|ELA90125.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1574]
gi|430604826|gb|ELB42256.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2071]
Length = 581
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 196/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + T +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELTQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|333372985|ref|ZP_08464906.1| DNA polymerase III, gamma/tau subunit DnaX, partial [Desmospora sp.
8437]
gi|332971339|gb|EGK10302.1| DNA polymerase III, gamma/tau subunit DnaX [Desmospora sp. 8437]
Length = 356
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 181/352 (51%), Gaps = 6/352 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F++L+GQ V +L +A++ G + YLF GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRVWRPQKFEDLIGQEHVTTTLKNALAEGHFSHAYLFSGPRGTGKTSAAKIMAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L +PC C C + G DV E+D+ D + L P R K++I
Sbjct: 65 LQGPAPEPCNECDACRKITEGSLMDVVEIDAASNRGVDEIRDLRDKVKYAPSEVRCKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E + +L +LE H +F++ T E KLP + +SR Q++ F + G+
Sbjct: 125 VDEVHMLTAEAFNALLKTLEEPPGHAIFILATTEPHKLPSTIISRCQRFSFRRHTLGNTL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
LR+IC + I + +AL IA ++G +RDA LLDQ L+ ++ + + G V
Sbjct: 185 GHLRKICDSQGIQAEDSALAVIAQAADGGMRDALSLLDQVLAFSDDRVDEAAVLSVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S L DL++ L D + + EL+ ++P +LI L L D+L + E
Sbjct: 245 SRATLGDLMEACLGRDAGTALEKVEELLADGLEPERLIHDLVQLSRDLLLLAAAPELKEV 304
Query: 595 RKNFFGKH-----TSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
++ G+ + L L+ L +T++Q++ + H L +AL++
Sbjct: 305 QERLAGEERWNRLIKRESIDGLEGVLETLIQTQQQMKWAPHPRVLLEMALVR 356
>gi|359403129|ref|ZP_09196036.1| DNA polymerase III subunits gamma and tau [Spiroplasma melliferum
KC3]
gi|438118365|ref|ZP_20871342.1| DNA polymerase III subunits gamma and tau [Spiroplasma melliferum
IPMB4A]
gi|357968346|gb|EHJ90855.1| DNA polymerase III subunits gamma and tau [Spiroplasma melliferum
KC3]
gi|434155792|gb|ELL44710.1| DNA polymerase III subunits gamma and tau [Spiroplasma melliferum
IPMB4A]
Length = 690
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 192/353 (54%), Gaps = 10/353 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RPN FD++VGQ + ++L +AI + YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 SLYRKYRPNNFDKIVGQIEIRKALKNAIINNTFSHAYLFSGPRGTGKTSIAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++L++ PC C C + + DV E+D+ N D + + + L P +++K++I
Sbjct: 65 INLDNGNPCNECASCKEINRAGAVDVFEIDAASNNGVDEIREIRNNVQLLPTMTKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE QHVVF++ T E K+P + +SR Q+Y+F KI ++
Sbjct: 125 IDEIHMLTNSAFNALLKTLEEPPQHVVFILATTESHKIPATIISRCQQYNFRKISKVELE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
+ + I +E I +D AA+ IA ++GS RD+ +L+Q+ + + +TL + V
Sbjct: 185 NNIINILQKEEIKYDLAAIKEIALLADGSARDSLSILEQVIMFSDRNVTLENVNIIFATV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CL 588
S L LL L T+ +I ++++ ++ D L L +++ +I K L
Sbjct: 245 SKTIKLKLLKDILEYKTTEVLIASKKIYQAGSDFEVLTLNLLDILKEIFEFKQTNNLIFL 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
SE + F + S ++ L L + +E ++R SK Q + + LL+
Sbjct: 305 SLLSEEQAKGFAEQLSSKELIML---LDLFTEAASKMRNSKTQEMYFELILLK 354
>gi|332686114|ref|YP_004455888.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
ATCC 35311]
gi|332370123|dbj|BAK21079.1| DNA polymerase III subunits gamma and tau [Melissococcus plutonius
ATCC 35311]
Length = 585
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 193/355 (54%), Gaps = 5/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI++ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDIVGQKAITQTLKNAIAQKKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC +C C +SG DV E+D+ N + + + P SS +K++I
Sbjct: 65 KHNDDGEPCNICDVCLAITSGSLNDVIEIDAASNNGVEEIRDIRDKVKYAPTSSDYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPPNVVFILATTEPHKIPATIISRTQRFDFRRINVHDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E +I +++ AL +A + G +RDA +LDQ +S KK+T+ A + G +
Sbjct: 185 HHLAFILKETSIEYEEQALYTVAQTAEGGMRDALSILDQIISFNNKKVTVEDARRITGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
+D+ + ++ LS + + + + + +L+ L +L+M A L +
Sbjct: 245 TDEMMDQYIEYCLSGEAEKALESLEGMFSAGKEANRLVENLLLYCRDLLMYQQAPTLLTE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
F + E +K+ ++ILS+T+ +R + + +L VA ++L+++
Sbjct: 305 KVGNLTETFKQLAQETSAEKIYTFIQILSDTQNDIRFTNNTAIYLEVATVKLANT 359
>gi|448745341|ref|ZP_21727195.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus KT/Y21]
gi|445561334|gb|ELY17543.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus KT/Y21]
Length = 565
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|374855143|dbj|BAL58007.1| DNA polymerase III subunit gamma/tau [uncultured Chloroflexi
bacterium]
Length = 528
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 170/297 (57%), Gaps = 4/297 (1%)
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
T +L +K+R F E+VGQ V ++L++A+ V YLF GPRGTGKT+ +R+ A A
Sbjct: 6 TSQALYRKWRSQTFAEVVGQQHVTQTLVNALKLDRVAHAYLFAGPRGTGKTTTARLLAKA 65
Query: 353 LNCLSLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSR 410
+NC + EDQ +PC C C + GR D+ E+D+ D + L + P +R
Sbjct: 66 VNCQA-EDQAARPCNRCEICLAVNEGRLLDLIEIDAASNTGVDDIRDLREKVNFRPGQAR 124
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
K +IIDE +L + +L +LE +HV+FV+ T E +K+P + SR Q++ F +IK
Sbjct: 125 RKFYIIDEVHMLSNSAFNALLKTLEEPPEHVIFVLATTEPEKIPATITSRCQRFDFRRIK 184
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYE 529
DI +RL I +E + + AAL++IA +++GS+RDA LLDQL+ G + ITL L
Sbjct: 185 LADIVNRLSYIVEQEGLKAEPAALEYIARQASGSMRDAISLLDQLTAYGTETITLELVQT 244
Query: 530 LIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
++G V+ ++ L+D + + + + +++ +DP QL +L + ++ K
Sbjct: 245 VLGAVTSQAVMALVDALIERNVAAGLDLINQIISEGVDPRQLARELVEYLRSVMLVK 301
>gi|359415351|ref|ZP_09207816.1| DNA polymerase III, subunits gamma and tau [Clostridium sp.
DL-VIII]
gi|357174235|gb|EHJ02410.1| DNA polymerase III, subunits gamma and tau [Clostridium sp.
DL-VIII]
Length = 549
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 200/362 (55%), Gaps = 15/362 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I + YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPKNFEDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D +PC C C + G + DV E+D+ N D++ ++ PP +++KI+I
Sbjct: 65 LDLQDGEPCNECEMCKKINQGLAIDVTELDAASNNGIDKIRDIIDDTKYPPQEAKYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++V+F++ T + KLP + LSR Q++ F +IK DI+
Sbjct: 125 MDEVHMLSVGAVNAFLKTLEEPPKNVIFILATTDPQKLPITILSRCQRFDFKRIKQKDIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYE----LI 531
RL++I ++IN++Q +LD I+ +G++RDA +LDQ +G+ + YE ++
Sbjct: 185 DRLKKIVDAQSINYEQKSLDLISRVCDGAMRDALSILDQAIAMGEN---EIKYEDLVSIL 241
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ-----LISQLANLIMDILAGK 586
G+V+++ L ++ D + ++ +L+ S D MQ LI+ NL+M +
Sbjct: 242 GLVTNEHLFNITDAVIDRSVEKAMVIIDKLVYSGKD-MQLFIKDLIAHFRNLLMVKVTNN 300
Query: 587 CLE--DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
E D S + + ++++ RA++IL + E + SK +L +A++++
Sbjct: 301 PEEVLDMSLENIQMVKEQGRKIRVEEIMRAIRILQDAEANSKASKQSRLYLELAIIKMCK 360
Query: 645 SE 646
E
Sbjct: 361 IE 362
>gi|224475611|ref|YP_002633217.1| DNA polymerase III gamma and tau subunits [Staphylococcus carnosus
subsp. carnosus TM300]
gi|222420218|emb|CAL27032.1| DNA polymerase III gamma and tau subunits [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 583
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 184/351 (52%), Gaps = 11/351 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ V ++L +AI++G + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFDDVVGQEHVTKTLRNAIAKGKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 PNSVDGEPCNECDICKSITQGSNSDVIEIDAASNNGVDEIRNIRDKVKYAPSQSKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGLDQII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR + + I +D A+ FIA S G +RDA ++DQ G + +TL A + G V
Sbjct: 185 ERLRYVAESQHIEYDDEAIAFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+ L LL+ + + R + + + +LI+ L + D + K + +E
Sbjct: 245 DEASLNALLNDVANGQVKDAFARYHQFIAEGKEVNRLINDLIYFVRDTIMNKTAQRETEY 304
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
A F D+ L + + ++++T +R S +Q V L++++
Sbjct: 305 DALMAF--------DLDTLYKMIDLINDTLVSVRFSVNQNVHFEVLLVKMA 347
>gi|288928509|ref|ZP_06422356.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral
taxon 317 str. F0108]
gi|288331343|gb|EFC69927.1| DNA polymerase III, gamma and tau subunit [Prevotella sp. oral
taxon 317 str. F0108]
Length = 608
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 189/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NCL+
Sbjct: 8 ARKYRPVSFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
E + C C C F+ RS ++ E+D+ N + + +LM +PP ++K+FII
Sbjct: 68 PTEMGEACNHCESCQAFNDQRSYNIFELDAASNNSVENIKTLMDQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPGIID 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+R+ E I +++ AL IA K++G +RDA + DQ + + +T + ++
Sbjct: 188 HLKRVAENEGIAYEEEALAVIAEKADGGMRDALSIFDQAASFAQGNLTYDSVIADLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D ++DLA+ + S+ ++ +++ D L++ LA + ++L K L +
Sbjct: 248 SDNYFSIIDLAVQNKVSDIMVLVNDIIAKGFDAGNLVNGLATHVRNVLMAKDESTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + + + L +AL+++++ + R S ++ + L+Q++
Sbjct: 308 VSARQRERFKEQAQKCPTKFLYKALQVMNQCDIHYRASSNKRLLAELTLIQVA 360
>gi|148238398|ref|YP_001223785.1| DNA polymerase III subunit gamma/tau [Synechococcus sp. WH 7803]
gi|147846937|emb|CAK22488.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. WH 7803]
Length = 621
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 176/340 (51%), Gaps = 8/340 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP D+LVGQ + +L A+ G + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRLDQLVGQEAIAATLGHALRSGRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ E +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 NSEGPTPEPCGHCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E I AL +A ++ G +RDAE LLDQLSLL I ++L+G V
Sbjct: 188 ERHLTWIAEQETIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIQAEAVWDLLGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+ ELL L+ S + + R L+ D ++ LA ++ D++ D E
Sbjct: 248 PEQELLALVAAMRSGEPVALLEATRNLLDRGRDAGSVLQGLAGILRDLVLMAAAPDRPEL 307
Query: 594 --ARKNFFGKHTSEADMQKLSRALKILSE---TEKQLRMS 628
F + A SR L+ S+ TE+QLR S
Sbjct: 308 TSVSPQFRDQLPELAKAIGRSRLLQWQSQLRGTEQQLRQS 347
>gi|260102437|ref|ZP_05752674.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
gi|260083757|gb|EEW67877.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
Length = 595
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 149/253 (58%), Gaps = 2/253 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS + + A E+ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYQDALEITGFA 244
Query: 535 SDDELLDLLDLAL 547
+ + + +L LAL
Sbjct: 245 AKENIEKIL-LAL 256
>gi|383453970|ref|YP_005367959.1| DNA polymerase III subunits gamma and tau [Corallococcus
coralloides DSM 2259]
gi|380732621|gb|AFE08623.1| DNA polymerase III subunits gamma and tau [Corallococcus
coralloides DSM 2259]
Length = 406
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 180/363 (49%), Gaps = 8/363 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP FD++ GQ VVR++ +AI V YLF GPRG GKT+A+R+ A ALNC
Sbjct: 10 LARKWRPQKFDDMTGQEHVVRTIGNAIKMDRVAHAYLFCGPRGVGKTTAARLLAKALNCE 69
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PCG CR C ++G S DV E+D N + V + ++A P R KI+II
Sbjct: 70 QGPTATPCGTCRACTEITAGTSVDVAEIDGASNNGVENVREIRENAKYLPQRDRHKIYII 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L G + +L +LE HV F+ T E KLP + LSR Q+++F +I +
Sbjct: 130 DEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQRHNFRRISAARMLQ 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RL+ IC E + +L + +S G +RDA LLDQ L+ G T E +G +
Sbjct: 190 RLKEICQAEGAGISEQSLSLVVRQSEGGMRDALSLLDQILASCGPNPTDEAVAEAMGAID 249
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL----EDC 591
+ D + + D + R E+ +D +L +LA + + K L +
Sbjct: 250 RTVVQDFAEALVRKDAKRVLGRVDEVFNRGLDLKRLAEELALQLRHLFVTKSLGEAPAEL 309
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL---QLSSSESS 648
+E+ + EAD +LSR I+ + + L +ALL QLS + S
Sbjct: 310 AESEQKALVALAKEADTAQLSRLFDIVHGCIWDVSRAAQPRLALEMALLKAIQLSPAGSI 369
Query: 649 LDL 651
DL
Sbjct: 370 PDL 372
>gi|292669040|ref|ZP_06602466.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC
43541]
gi|292649295|gb|EFF67267.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC
43541]
Length = 644
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 186/354 (52%), Gaps = 8/354 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ + R+L A++ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 38 ALYRRWRPESFADLVGQEHISRTLSRAVASGQTSHAYLFTGPRGTGKTSTAKILARALNC 97
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PCG+C C S G S DV E+D+ D + L +S P + R+KI+I
Sbjct: 98 AEGPTLTPCGVCESCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTAGRYKIYI 157
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + V+F++ T E K+P + SR Q+Y F +I +I
Sbjct: 158 IDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITVTEIR 217
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL +C E I ++ AL IA +++G +RDA +LDQ + L + ++T E +G+V
Sbjct: 218 DRLLYVCRESGIAAEEDALGLIALQADGGMRDALSILDQCTALAEGQLTTERVQEALGLV 277
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL---IMDILAGKCL--- 588
+ + D + + EL+++ + Q++ +LA +M + G +
Sbjct: 278 GHAWIEKMAMQIADCDAPALIAQLGELLQNGRELKQILGELAQYFRSLMIVGVGGTVSAA 337
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
E C+E +++ + +K+ L+ L+ET ++LR S + + L
Sbjct: 338 EFCAE-QEDVLREEAKRFTQEKIMTILRTLNETMQELRFSPQPRIAVETMFIAL 390
>gi|427725275|ref|YP_007072552.1| DNA polymerase III subunits gamma and tau [Leptolyngbya sp. PCC
7376]
gi|427356995|gb|AFY39718.1| DNA polymerase III, subunits gamma and tau [Leptolyngbya sp. PCC
7376]
Length = 803
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 192/357 (53%), Gaps = 8/357 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +A+ + + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQMFSELVGQEAIATTLSNALEKKRIAPAYLFSGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + P CG C C ++G + DV E+D+ D + L++ + P R+K++
Sbjct: 66 NAANPTPSPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIERSQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE HVVFV+ T + ++ + +SR Q++ + +I +
Sbjct: 126 VIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDYRRIPLDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
LR+I E I ++ +A +NG +RDAE LLDQLSLL +IT ++L+G V
Sbjct: 186 VGHLRKIARNENIEIPLESVILVAQIANGGLRDAESLLDQLSLLSGEITPDKVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE---DC 591
+ +LL L+ + S++ + + R L+ +P+ ++ LA+ +++L K D
Sbjct: 246 PERDLLGLIQVVRSNNPEAVIQQCRSLLNRGREPLVVLQNLASFYLNLLIAKTAPQRGDL 305
Query: 592 SEARKNFFGKHTSEA---DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ + EA D+ + + + L E+E QL+ + WL + LL L S
Sbjct: 306 IAVTQPTWQALCQEAQGWDVALILKGQQHLKESEYQLKNTTQPRLWLEITLLGLLPS 362
>gi|431758349|ref|ZP_19546976.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E3083]
gi|430617407|gb|ELB54280.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E3083]
Length = 581
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 189/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E IN++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ + L + + + +++ + + + + + D+L A +E+
Sbjct: 245 TDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQQAPNLVEE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 305 QSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|332299032|ref|YP_004440954.1| DNA polymerase III subunits gamma and tau [Treponema brennaborense
DSM 12168]
gi|332182135|gb|AEE17823.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense
DSM 12168]
Length = 672
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 10/369 (2%)
Query: 302 RPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQ 361
RP FD+LVGQ V +L +AI G + YLF GPRG GKTS++RI A ALNC
Sbjct: 11 RPQRFDDLVGQEFVAATLKNAIQSGKIAHAYLFAGPRGCGKTSSARILAKALNCEKGPAA 70
Query: 362 KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQL 421
PCG C C + G S DV E+D + V + PP S R+KI+IIDE +
Sbjct: 71 VPCGECAACREITRGSSLDVIEIDGASNTSVNDVRQIKDEVLFPPNSCRYKIYIIDEVHM 130
Query: 422 LHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRI 481
L + +L ++E +V+F+ T EL K+P + SR Q++HF + I L +
Sbjct: 131 LSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQQFHFRLVAVEQIKELLAQA 190
Query: 482 CVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIVSDDELL 540
E + D AL +IA +S GSIRDA L DQ+S IT E +G+V D L
Sbjct: 191 AAEIQVQADDEALYWIARESTGSIRDAYTLFDQVSSFSDGHITFDKIREKLGLVGVDRLN 250
Query: 541 DLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFG 600
L ++ +++D S + R E+++S + Q IS +A+ + +L K EA
Sbjct: 251 GLCEICVAADASAAIERLDEILQSGVSIEQFISNVADYVRSLLLIKT-GITKEALLGQSA 309
Query: 601 KHTSEADMQ-----KLSRALKILSETEKQLRMS---KHQTTWLTVALLQLSSSESSLDLN 652
+ S+A + +L RAL + + +R S +++T L L+S SS ++
Sbjct: 310 ERYSQAVLAAWNQVQLERALSLFLNLYRDIRYSLNPRYETELAVTRLCGLTSFVSSAEVK 369
Query: 653 DSKLCLRYA 661
+ R A
Sbjct: 370 AAIETARIA 378
>gi|430833786|ref|ZP_19451797.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0679]
gi|430837096|ref|ZP_19455072.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0680]
gi|430486191|gb|ELA63059.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0679]
gi|430487877|gb|ELA64585.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0680]
Length = 581
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C +SG DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITSGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|428315131|ref|YP_007151278.1| DNA polymerase III subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428245166|gb|AFZ10948.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 471
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/363 (34%), Positives = 189/363 (52%), Gaps = 15/363 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP ELVGQ+ + +L +AI+ + YLF GPRGTGKTS +RI A +LNCL
Sbjct: 5 LHLKYRPKNLQELVGQDTIKTTLTNAITDSKIARAYLFTGPRGTGKTSTARILAKSLNCL 64
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + PCG C C S + DV E+D+ N D L++ + P SR++I+
Sbjct: 65 NSKKPTATPCGECSNCKTIDSSSNLDVTEIDAASHNGVDDARELIEHSNFAPAMSRYRIW 124
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
I+DEC L +L LE HVVF++ T E K+ + +SR Q ++F + I
Sbjct: 125 ILDECHQLSTSAQNALLKCLEEPPAHVVFILCTTEAHKVLPTIISRCQTFNFRALPVDAI 184
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+L++I E+I ++ IA S+G +RDA LL QLSLL +ITL+ E+ G +
Sbjct: 185 VGQLQKISDAESIAITIDSMRAIARISDGGLRDALQLLSQLSLLHSEITLTQVAEVSGSI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S+ + + LL S DT + ++ AR L+ S P ++S L ++ D+L K C
Sbjct: 245 SEQDSIALLKAIYSGDTLSVLLSARTLIDSGKTPKIILSSLLTVMRDLLVVKSTRQC--- 301
Query: 595 RKNFFGKHTSEA---------DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+N S + D + ++ A L ++E QLR S + TWL V LL L S
Sbjct: 302 -QNLIAGAVSYSQLRSLALHLDFETINAACTQLQKSEIQLRTSTNAATWLEVCLLNLMLS 360
Query: 646 ESS 648
S
Sbjct: 361 NKS 363
>gi|227550400|ref|ZP_03980449.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|257888429|ref|ZP_05668082.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257897196|ref|ZP_05676849.1| DNA directed DNA polymerase [Enterococcus faecium Com12]
gi|293379613|ref|ZP_06625750.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
PC4.1]
gi|293572056|ref|ZP_06683067.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980]
gi|424762987|ref|ZP_18190466.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX1337RF]
gi|431049954|ref|ZP_19493314.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1590]
gi|431738346|ref|ZP_19527291.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1972]
gi|431763822|ref|ZP_19552370.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E3548]
gi|227180459|gb|EEI61431.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|257824483|gb|EEV51415.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257833761|gb|EEV60182.1| DNA directed DNA polymerase [Enterococcus faecium Com12]
gi|291607841|gb|EFF37152.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E980]
gi|292641762|gb|EFF59935.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
PC4.1]
gi|402423587|gb|EJV55797.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX1337RF]
gi|430560363|gb|ELA99660.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1590]
gi|430597784|gb|ELB35567.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1972]
gi|430621646|gb|ELB58398.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E3548]
Length = 581
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 189/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E IN++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ + L + + + +++ + + + + + D+L A +E+
Sbjct: 245 TDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQQAPNLVEE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 305 QSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|433444410|ref|ZP_20409324.1| DNA polymerase III, subunits gamma and tau [Anoxybacillus
flavithermus TNO-09.006]
gi|432001607|gb|ELK22481.1| DNA polymerase III, subunits gamma and tau [Anoxybacillus
flavithermus TNO-09.006]
Length = 559
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 195/372 (52%), Gaps = 15/372 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRVFRPQSFKDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSIAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C +G DV E+D+ N D + + P S+ +K++I
Sbjct: 65 EHRPTAEPCNECPTCLGIMNGSISDVLEIDAASNNGVDEIRDIRDKVKFAPTSAPYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I+ I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRCQRFDFRRIELKSIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SRL+ + EE I+ ++ AL IA ++G +RDA LLDQ +S ++ L + G V
Sbjct: 185 SRLKTVVAEEGIDVEEEALFAIARAADGGMRDALSLLDQAISFSDDRVLLEDVLAVTGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDC 591
S ++ DL+ T + ++LM DP +L+ L D+L A LED
Sbjct: 245 SQRKIADLIYAMYEKKTVEALRLFQDLMEQGKDPNRLVEDLIYYYRDMLLYKAAPQLEDV 304
Query: 592 SEARKNFFGKHTSEADMQKLS---RALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-- 646
+ R + +DM S A+ +LS+++ +R++ H + V +++L E
Sbjct: 305 TH-RVLVDERFRELSDMIPTSFIYEAIDLLSKSQHDMRLTNHPRIHMEVTIVKLCYEEEH 363
Query: 647 -----SSLDLND 653
SSLDL +
Sbjct: 364 AIKSTSSLDLEE 375
>gi|28209849|ref|NP_780793.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88]
gi|28202284|gb|AAO34730.1| DNA polymerase III subunits gamma and tau [Clostridium tetani E88]
Length = 552
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 193/358 (53%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP+ F++++GQ + +L + I + YLF G RGTGKTS ++I A A+NC
Sbjct: 8 ALYREWRPSTFEDVIGQKHITITLKNQIKNERIAHAYLFCGTRGTGKTSTAKILAKAVNC 67
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L D +PC C C +S D++E+D+ N D + S+++ + PP +++K++I
Sbjct: 68 LDLRDGEPCNECEICKKINSNMLIDIEELDAASNNSVDNIRSIIEEVYYPPREAKYKVYI 127
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE +V+F++ T + KLP + LSR Q++ F +IK DI
Sbjct: 128 MDEVHMLSTGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRIKSEDIF 187
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR I ++ D +L I+ S+G++RDA +LDQ+ G ++ ++G++
Sbjct: 188 QRLRFIITQQGFFADDNSLRLISRISDGAMRDALGVLDQVISTGNGRVEYEDVVSILGLI 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+++ L+ L D + D V E++ S D +I L + ++L K +
Sbjct: 248 TNENLIKLTDSIIKKDIEECVKIIEEVIFSGKDSNNIIKDLILHMRNLLIIKVSQNPYEV 307
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D SE + + + ++++ R ++IL E E+Q + K +L +A++++ E
Sbjct: 308 LDMSEENIALLKEQSEKVRVEEIMRFIRILQEAEEQSKWVKQSRVYLELAIIKMCKIE 365
>gi|443313263|ref|ZP_21042875.1| DNA polymerase III, subunit gamma/tau [Synechocystis sp. PCC 7509]
gi|442776668|gb|ELR86949.1| DNA polymerase III, subunit gamma/tau [Synechocystis sp. PCC 7509]
Length = 629
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 199/361 (55%), Gaps = 10/361 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI + + YLF G RGTGKTS++RI + +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQEAIATTLTNAIRKSQIAPAYLFTGSRGTGKTSSARILSKSLNCL 65
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S +KPCG C C + G + DV E+D+ D + +++ A P R+K++
Sbjct: 66 SSPAPIEKPCGKCDACQGITKGIALDVIEIDAASNTGVDNIREIIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IDEC +L + +L +LE + VVF++ T + +++ + +SR Q++ F +I I
Sbjct: 126 AIDECHMLSSAAFNCLLKTLEEPPKSVVFILATTDPERVLPTIISRCQRFDFRRIPMQAI 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
A LR I EE I+ AL +A + G +RDAE LLDQLSLL +IT+ ++L G V
Sbjct: 186 ADHLRYIATEEDISISSDALQLVAGLAQGGLRDAESLLDQLSLLSGEITIERVWDLAGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIR-ARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
S+ + L+LL+ A++ +T++ AR++M +P+ ++ LA+ D+L K
Sbjct: 246 SEKDCLELLN-AIALCHPDTILESARKIMDRGREPLIVLQNLASFYRDLLIAKTAPTRND 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L + A K + ++ + + L+++E Q++ S WL V LL L ++ +
Sbjct: 305 LVSLTSATWESLRKLANNVEIATIVNGQQHLAKSEIQIKNSTQPRLWLEVTLLGLLATNT 364
Query: 648 S 648
+
Sbjct: 365 A 365
>gi|258649122|ref|ZP_05736591.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC
51259]
gi|260850774|gb|EEX70643.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC
51259]
Length = 594
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 191/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD++VGQ+ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NCL
Sbjct: 8 ARKYRPTNFDDVVGQHALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINCLH 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ CG C C F +GRS +V E+D+ N ++ + +L++ + P R+K+FII
Sbjct: 68 PGPGGEACGECESCQAFQAGRSLNVHELDAASNNSAEDIRALIEQVNILPQMGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L L +LE H +F++ T E KL + LSR Q Y F +++ DI
Sbjct: 128 DEVHMLSTAAANAFLKTLEEPPAHAIFILATTEKQKLLPTILSRCQIYDFNRMEVNDIVH 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+R+ ++ I +++AAL+ IA K++G +RDA + DQ++ + +T + E + ++
Sbjct: 188 HLKRVAEDQHIQYEEAALNVIAQKADGGMRDALSIFDQVAGFAEGNLTYAKVIEDLDLLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D + DL L+ ++ E++ IS LA D+L + L +
Sbjct: 248 YDYYFRVTDLLLAGKVPEVLLTLNEILNKGFAANHFISGLAAHFRDLLVSRDAITLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E + +G+ + L +AL++ S+ E Q + S ++ + + L++L+
Sbjct: 308 VAEDVRQRYGEQAGRCSLPFLYKALRLTSDCELQYKDSGNKRLRVELTLIELA 360
>gi|431751220|ref|ZP_19539912.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2620]
gi|430615874|gb|ELB52812.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2620]
Length = 581
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 189/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E IN++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTINYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ + L + + + +++ + + + + + D+L A +E+
Sbjct: 245 TDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQQAPNLVEE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 305 QSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|160946877|ref|ZP_02094080.1| hypothetical protein PEPMIC_00838 [Parvimonas micra ATCC 33270]
gi|158447261|gb|EDP24256.1| DNA polymerase III, subunit gamma and tau [Parvimonas micra ATCC
33270]
Length = 540
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ ++FRP F +VGQ +V L + I G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 6 AIYREFRPKDFTRVVGQAHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVNC 65
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D PC C C + ++ +V E+D+ R D + L + PP ++K++I
Sbjct: 66 LNPIDGNPCNECENCKMILEDKALEVVEMDAASNRRIDDIRELKEKVIYPPQIVKYKVYI 125
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L LE +H++F++ T E+DKLP + +SR Q++ F +I + DI
Sbjct: 126 IDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRINNSDIV 185
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
+ + + ++ ++ I+ S+G++RDA LLDQ+ GK KIT+ E +G+V
Sbjct: 186 ENINYVLNNLNVEIEEDGINLISELSSGAMRDALSLLDQVVATGKEKITIEDINECLGLV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDP----MQLISQLANLIMDILAGKCLED 590
+ + L +L L+S + T+ R L+++ P + LI N+I+ K L
Sbjct: 246 NLNMLFELSQSILNSSKNETIETFRNLVKNGKTPHNIIIDLIKHFRNIILVKSIKKELTT 305
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
++ + +H+++ +M +L L+ L + E +++ S Q + ++++ S
Sbjct: 306 LNDVEYKRYLEHSNKFEMDELIFILENLLDVEDKMKKSDMQNALAELLIIKICS 359
>gi|110003914|emb|CAK98254.1| putative dna polymerase III gamma/tau subunits protein [Spiroplasma
citri]
Length = 690
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 207/390 (53%), Gaps = 18/390 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RPN FD++VGQ + ++L +AI + YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 SLYRKYRPNNFDKIVGQIEIRKALKNAIINNTFSHAYLFSGPRGTGKTSIAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++L++ PC C C + + DV E+D+ N D + + + L P +++K++I
Sbjct: 65 INLDNGNPCNECASCKEINRAGAVDVFEIDAASNNGVDEIREIRNNVQLLPTMTKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE QHVVF++ T E K+P + +SR Q+Y+F KI ++
Sbjct: 125 IDEIHMLTNSAFNALLKTLEEPPQHVVFILATTESHKIPATIISRCQQYNFRKISKVELE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
+ + I +E I +D A+ IA ++GS RD+ +L+Q+ + + +TL + V
Sbjct: 185 NNIINILQKEEIKYDLTAIKEIALLADGSARDSLSILEQVIMFSDRNVTLENVNIIFATV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CL 588
S L LL L T+ +I ++++ ++ D L L +++ +I K L
Sbjct: 245 SKTIKLKLLKDILEYKTTEVLIASKKIYQAGSDFEVLTLNLLDILKEIFEFKQTNNLIFL 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ-LSSSES 647
SE + F + S ++ L L + +E ++R SK Q + + LL+ L+ E+
Sbjct: 305 SLLSEEQAKGFAEQLSSKELIML---LDLFTEAASKMRNSKTQEMYFELILLKALAIFEN 361
Query: 648 ------SLDLNDSKLCLRYAHDKDGDSHCT 671
+L L+D + L Y K + H T
Sbjct: 362 NIKNLEALKLSDL-MILTYEEGKKINQHKT 390
>gi|75812737|ref|YP_320354.1| ATPase [Anabaena variabilis ATCC 29413]
gi|75705493|gb|ABA25165.1| ATPase [Anabaena variabilis ATCC 29413]
Length = 429
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 172/293 (58%), Gaps = 3/293 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP E++GQ +VR+L++AI+ + YLF GP+GTGKTS +RI A +LNC
Sbjct: 5 LHLKYRPQTLSEVIGQEHIVRTLINAIALQKIAPAYLFSGPKGTGKTSTARIIAKSLNCQ 64
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + KPCG C C ++ S DV E+D+ + + + L+ + P RFKIF
Sbjct: 65 SSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTIQFAPVEGRFKIF 124
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDEC L ++W +L ++E+ +HVVF+ T EL K+P + +SR QK+ F ++ +
Sbjct: 125 IIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPVSLV 184
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGI 533
AS L +I +E+IN +A+ +A + G +RD+ LLDQL+LLG ++IT + +EL G
Sbjct: 185 ASYLEQISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITSNWVWELSGT 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
+S+ +LL + + + + + ++ + S P + + L + + D+L K
Sbjct: 245 ISEYDLLTACENIIKGEITGNLGILQDWIESGKQPTAIHTSLVSFLKDLLVCK 297
>gi|340357125|ref|ZP_08679752.1| DNA polymerase III, gamma/tau subunit DnaX [Sporosarcina
newyorkensis 2681]
gi|339618632|gb|EGQ23225.1| DNA polymerase III, gamma/tau subunit DnaX [Sporosarcina
newyorkensis 2681]
Length = 593
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 183/355 (51%), Gaps = 10/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F E+ GQ + ++L + + T YLF GPRGTGKTSA++IFA ALNC
Sbjct: 15 ALYRAYRPQTFGEMSGQQAIKQTLQNTLLHQKTTHAYLFSGPRGTGKTSAAKIFAKALNC 74
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G + DV E D+ +R + + +++ + P ++RFK++I
Sbjct: 75 ENGPATEPCNECETCRSITEGSNTDVTEFDAASNSRVEEIRDIIERVHVAPSNARFKVYI 134
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E KLP + +SR Q++ F I G+I
Sbjct: 135 IDEVHMLSNSAFNALLKTLEEPPAHVVFILATTEPHKLPLTIISRCQRFDFKPITAGEIM 194
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+R++ + + + A+ IA + G +RDA +LDQ +S G ++T A + G +
Sbjct: 195 QRMRKVLDDIGVKAEDGAMRAIAQAATGGMRDALSMLDQAVSFSGDELTTEDALLVTGAI 254
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL-------AGKC 587
++ L + D + + +L+ D +L + DIL
Sbjct: 255 GEEIFYQLAQAIQAKDAGSALTLLHQLIAEGKDVGRLAEDMITFFRDILLLGTAPELTDL 314
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
LE S+ K F + L R + ILS+T++++R S H ++ ALL++
Sbjct: 315 LELISDGEK--FKELAQGFHSDDLYRYIDILSKTQQEMRFSNHGKVYIESALLKM 367
>gi|397690783|ref|YP_006528037.1| DNA polymerase III subunit tau [Melioribacter roseus P3M]
gi|395812275|gb|AFN75024.1| DNA polymerase III subunit tau [Melioribacter roseus P3M]
Length = 527
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 190/362 (52%), Gaps = 6/362 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+E+VGQ + +L +AI + YLF GPRG GKT+ +RI A LNCL+
Sbjct: 8 ARKWRPQKFEEVVGQEHITTTLKNAIKNNRIAHAYLFAGPRGVGKTTTARILAKVLNCLN 67
Query: 358 LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIID 417
D +PC C C F + +S DV E+D R + + SL +S P ++K++IID
Sbjct: 68 PLDGEPCNECEMCKSFHNSQSLDVIEIDGASNRRIEEIRSLRESVKYAPAKGKYKVYIID 127
Query: 418 ECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASR 477
E +L E++ +L +LE +H +F+ T ++ K+P + +SR Q++ F +I+ I
Sbjct: 128 EVHMLTPESFNALLKTLEEPPEHTLFIFATTDVHKVPLTIVSRCQRFDFRRIELNTIKDL 187
Query: 478 LRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSD 536
L +I E I D AL IA K++G++RDAE L DQ +S GKK+ +++ ++
Sbjct: 188 LSKIAEAEGIQIDDTALSLIAKKADGALRDAESLFDQIISYSGKKVNSEEISQMLNLIDQ 247
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQL----ANLIMDILAGKC-LEDC 591
D + D LS D + R + + + + +++L N+ +L L +
Sbjct: 248 DIYFRISDAILSKDYNAAFEVTRTIYDNGWNFIDFLNELNEHFRNIFTVVLRKSTDLVEA 307
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
+E K + + L R L +++T+ +++ + Q + +AL QL E + +
Sbjct: 308 AELYKEKYLLYKDSFSESDLLRILTFINKTQYEIKSATDQRLKIEIALCQLIGLEKTATI 367
Query: 652 ND 653
+D
Sbjct: 368 SD 369
>gi|297209025|ref|ZP_06925425.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|385780743|ref|YP_005756914.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 11819-97]
gi|418573566|ref|ZP_13137753.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21333]
gi|296886296|gb|EFH25229.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|364521732|gb|AEW64482.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 11819-97]
gi|371981464|gb|EHO98643.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21333]
Length = 565
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLNQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|218132674|ref|ZP_03461478.1| hypothetical protein BACPEC_00534 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992400|gb|EEC58403.1| DNA polymerase III, subunit gamma and tau [[Bacteroides]
pectinophilus ATCC 43243]
Length = 540
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 193/368 (52%), Gaps = 10/368 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++ GQ+ +V +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKWRPADFDDVKGQDAIVTTLRNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PCG C C ++G S +V E+D+ N + + + + P R+K++I
Sbjct: 65 EHPVDGRPCGECAMCKSIAAGSSMNVIEIDAASNNGVEDIRKIREEVQYSPTEGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTETHKIPITILSRCQRYDFKRISIETIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
+RL + E IN + AL +IA ++GS+RDA LLDQ L+ LG+ + E++G
Sbjct: 185 ARLEELMKAENINVEDKALRYIAKAADGSLRDALSLLDQCLAFYLGQDLKYDNVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
V + LL + L++DT+ + +L+ D Q + + ++L K ED +
Sbjct: 245 VDTEVFSRLLRMVLAADTTGCIRLLEDLIMQGRDLGQFVVDFVWYLRNLLLVKTSEDAQD 304
Query: 594 A------RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--SS 645
+ + D L R ++I SE ++ S + + +AL++L+ +
Sbjct: 305 VIDMSSDNLALLKEESGLIDDDTLMRYIRIFSELSNDVKYSTQKRIMIEIALIKLTHPAM 364
Query: 646 ESSLDLND 653
E S D++D
Sbjct: 365 EQSRDISD 372
>gi|418643726|ref|ZP_13205885.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-55]
gi|443639489|ref|ZP_21123496.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21196]
gi|375028094|gb|EHS21448.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-55]
gi|443406954|gb|ELS65523.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21196]
Length = 565
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLNQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|225571144|ref|ZP_03780142.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM
15053]
gi|225159975|gb|EEG72594.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM
15053]
Length = 521
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 188/356 (52%), Gaps = 8/356 (2%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +KFRP+ F+++ GQ+ +V++L + I + YLF G RGTGKT+ ++IFA A+N
Sbjct: 1 MALYRKFRPDEFEDVKGQDAIVKTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVN 60
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C D PCG C C +SG S +V E+D+ N D + + + P RFK++
Sbjct: 61 CEHPVDGSPCGECAMCRTIASGTSMNVIEIDAASNNGVDNIREIREEVAYRPTEGRFKVY 120
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE ++V+F++ T E K+P + LSR Q+Y F +I I
Sbjct: 121 IIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRISIETI 180
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS--LLGKKITLSLAYELIG 532
+ RLR + +E + ++ A+ +IA ++GS+RDA LLDQ + +G+++T E++G
Sbjct: 181 SGRLRELIEKEEWDVEEKAVRYIARMADGSMRDALSLLDQCAAFYIGERLTYDHVLEVLG 240
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LE 589
V + LL L D + EL+ + QL + + ++L K +E
Sbjct: 241 AVDTEVFSRLLRELLDMDVHQVIETVEELVMQGRELSQLAADFTWYLRNLLLVKGSDNME 300
Query: 590 DCSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
D + + EA M L R ++I S+ QL+ + + L V L++L
Sbjct: 301 DVLDVSTENLIQLKEEAQMIDNDTLIRYIRIFSDLTNQLKFATQKRVLLEVTLIKL 356
>gi|409387672|ref|ZP_11239852.1| DNA polymerase III subunits gamma and tau [Lactococcus
raffinolactis 4877]
gi|399205229|emb|CCK20767.1| DNA polymerase III subunits gamma and tau [Lactococcus
raffinolactis 4877]
Length = 542
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 145/245 (59%), Gaps = 1/245 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV R+L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRKYRSQRFDEMVGQEVVARTLKNAIITEQISHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC +C C ++G DV E+D+ N D + + + P +++K++I
Sbjct: 65 PNQTDGEPCNVCEICQAVTNGSLEDVIELDAASNNGVDEIRDIRDKSTYAPSRAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVFV+ T E+ K+P + LSR Q++ F I DI
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPTENVVFVLATTEIQKIPATILSRVQRFAFRAITSHDIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L + E + FD++A+ IA ++G +RDA LDQ LS +TL +A + G +
Sbjct: 185 QHLSEVLTAEGVTFDESAVALIANAADGGMRDALSTLDQALSFAENGLTLDVALLVTGAI 244
Query: 535 SDDEL 539
S L
Sbjct: 245 SKQAL 249
>gi|315639690|ref|ZP_07894830.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus italicus
DSM 15952]
gi|315484651|gb|EFU75107.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus italicus
DSM 15952]
Length = 573
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 201/365 (55%), Gaps = 7/365 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FDE+VGQ + ++L +AI + ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDEIVGQQAITQTLKNAIVQQQISHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N + + + A P +++K++I
Sbjct: 65 PHSVDGEPCNECDMCLSITKGSQEDVIEIDAASNNGVEEIRFIRDRANYAPTQAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKKNVIFILATTEPHKIPATIISRTQRFDFKRILPQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E +++++ AL IA + G +RDA +LDQ ++ IT A+++ G +
Sbjct: 185 QHLEEILQEMNLSYEEDALAVIARAAEGGMRDALSILDQAIAFSDGTITTQDAFDVTGSL 244
Query: 535 SDDELLDLLDLA-LSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLE 589
+ EL+D L LA L+ D + + + L+ S + +LI L D+L A L
Sbjct: 245 T-SELMDRLLLACLTHDATGALEQLDGLLESGKEARRLIENLLFYCRDVLVQQQAPALLT 303
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
++ + F + + ++L + IL+ T+ +R++ T +L VA+++L++ S++
Sbjct: 304 KENKRLTDDFLQLAQQLPTERLYEWITILNTTQNDIRLTTSPTVYLEVAMVKLAAEGSTI 363
Query: 650 DLNDS 654
+ S
Sbjct: 364 TVQSS 368
>gi|160936876|ref|ZP_02084240.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC
BAA-613]
gi|158440066|gb|EDP17813.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC
BAA-613]
Length = 560
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 189/366 (51%), Gaps = 12/366 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++ GQ+ +V++L + I+ + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPVSFEDVKGQDPIVQTLKNQITSERIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C SG S +V E+D+ N + + + + PP R++++I
Sbjct: 65 EHPVDGSPCNECPTCRSIQSGSSMNVVEIDAASNNGVENIRDIREQVQYPPTEGRYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRISLETIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
+RLR + E I + AL ++A ++GS+RDA LLDQ GK +T A E++G
Sbjct: 185 NRLRELTQAEQIQVEDKALLYVAKAADGSLRDALSLLDQCVAFHYGKVLTYDNALEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSN-------TVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
V + + T + VI+ REL + D + + L LI +
Sbjct: 245 VDSGVFSQMFGAIVEGRTKDCICSLEEIVIQGRELGQFVTDFIWYMRNLL-LIQSADDAE 303
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--S 644
L D SE + D L R ++I SE QLR + + + VAL++L+ S
Sbjct: 304 GLVDMSEENLKQLRSDAGKTDGTTLMRYIRIFSELSNQLRYASQKRVLVEVALIKLTRPS 363
Query: 645 SESSLD 650
E +LD
Sbjct: 364 MEPNLD 369
>gi|225387325|ref|ZP_03757089.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme
DSM 15981]
gi|225046574|gb|EEG56820.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme
DSM 15981]
Length = 566
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 192/365 (52%), Gaps = 10/365 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++ GQ+ +V++L + I+ G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPASFEDVKGQDPIVQTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + PC C C SG S +V E+D+ N + + + PP R++++I
Sbjct: 65 ENPVNGSPCNECPACRAIISGSSMNVVEIDAASNNGVENIRDIRDQVQYPPTDGRYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRIALETIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
LR + E I + AL ++A ++GS+RDA LLDQ GK +T E++G
Sbjct: 185 GHLRELTRAEHIEVEDRALTYVAKAADGSLRDALSLLDQCVAFHYGKLLTYDNVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA------GKC 587
V +L + T + +++ E++ + Q ++ + ++L +
Sbjct: 245 VDASVFSELFGAIVEGRTRDCILKLEEIVIQGRELGQFVTDFIWYMRNLLLFQSADDAEG 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--SS 645
L D S + +AD + L R ++I SE QLR + + + VAL++L+ +
Sbjct: 305 LLDMSTENLKQLEEDAKKADGETLMRYIRIFSELSNQLRYASQKRVIVEVALIKLTRPAM 364
Query: 646 ESSLD 650
E+SLD
Sbjct: 365 ETSLD 369
>gi|335047882|ref|ZP_08540902.1| DNA polymerase III, subunit gamma and tau [Parvimonas sp. oral
taxon 110 str. F0139]
gi|333757682|gb|EGL35240.1| DNA polymerase III, subunit gamma and tau [Parvimonas sp. oral
taxon 110 str. F0139]
Length = 543
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ ++FRP F +VGQ +V L + I G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 AIYREFRPKDFTRVVGQAHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D PC C C + ++ +V E+D+ R D + L + PP ++K++I
Sbjct: 64 LNPIDGNPCNECENCKMILEDKALEVVEMDAASNRRIDDIRELKEKVIYPPQIVKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L LE +H++F++ T E+DKLP + +SR Q++ F +I + DI
Sbjct: 124 IDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRINNSDIV 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
+ + + ++ ++ I+ S+G++RDA LLDQ+ GK KIT+ E +G+V
Sbjct: 184 ENINYVLNNLNVEIEEDGINLISELSSGAMRDALSLLDQVVATGKDKITIDDINECLGLV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDP----MQLISQLANLIMDILAGKCLED 590
+ + L +L L+S + T+ R L+++ P + LI N+I+ K L
Sbjct: 244 NLNMLFELSKSILNSSKNETIETFRNLVKNGKTPHNIIIDLIKHFRNIILVKSIKKELTT 303
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
++ + +H+++ +M +L L+ L + E +++ S Q + ++++ S
Sbjct: 304 LNDVEYKRYLEHSNKFEMDELIFILENLLDVEDKMKKSDMQNALAELLIIKICS 357
>gi|403514389|ref|YP_006655209.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
R0052]
gi|403079827|gb|AFR21405.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
R0052]
Length = 595
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 149/253 (58%), Gaps = 2/253 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAAYKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKEDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I +E I ++ AL IA ++G +RDA +LDQ LS + + A E+ G
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYQDALEITGFA 244
Query: 535 SDDELLDLLDLAL 547
+ + + +L LAL
Sbjct: 245 AKENIEKIL-LAL 256
>gi|418911143|ref|ZP_13465128.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG547]
gi|377727010|gb|EHT51120.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG547]
Length = 565
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILTTTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|302384618|ref|YP_003820440.1| DNA polymerase III subunits gamma and tau [Clostridium
saccharolyticum WM1]
gi|302195246|gb|ADL02817.1| DNA polymerase III, subunits gamma and tau [Clostridium
saccharolyticum WM1]
Length = 531
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 193/368 (52%), Gaps = 14/368 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++ GQ+ +V++L + I G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPPSFSDVKGQDHIVQTLKNQIVAGRIGHAYLFCGTRGTGKTSIAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
ED PCG CR C ++G S +V E+D+ N + + + PP +++++I
Sbjct: 65 ECPEDGSPCGECRTCKNIAAGASLNVVEIDAASNNGVENIREIRDEVQYPPTEGKYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVLSRCQRYDFKRITVETIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
L+ + E I + AL +IA ++G++RDA LLDQ G+ +T +++G
Sbjct: 185 EHLKELTAAEHIQVEDRALTYIAKSADGALRDALSLLDQCIAFHYGELLTYDNVLDVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSN-------TVIRARELMRSKIDPMQLISQLANLIM--DILA 584
V + + + T + VI+ REL + ID I L NL++ +
Sbjct: 245 VDITVFGTMFRAIVENRTKDCIICLEELVIQGRELGQFVID---FIWYLRNLLILKSVDN 301
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
G+ L D S + + + D + L R +++ S+ QLR + + + VAL++L+
Sbjct: 302 GENLLDMSTENQTLLKEDSRLTDNETLLRYIRVFSDLSNQLRYAFQKRVLIEVALIKLTR 361
Query: 645 SESSLDLN 652
+ +L+
Sbjct: 362 PQMEQNLD 369
>gi|283768194|ref|ZP_06341108.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus H19]
gi|283461139|gb|EFC08224.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus H19]
Length = 565
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|357056365|ref|ZP_09117413.1| hypothetical protein HMPREF9467_04385 [Clostridium clostridioforme
2_1_49FAA]
gi|355380819|gb|EHG27954.1| hypothetical protein HMPREF9467_04385 [Clostridium clostridioforme
2_1_49FAA]
Length = 560
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 191/368 (51%), Gaps = 16/368 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++ GQ+ +V++L + I+ + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPVSFEDVKGQDPIVQTLKNQITSERIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C SG S +V E+D+ N + + + + PP R++++I
Sbjct: 65 EHPVDGSPCNECPTCRSIQSGSSMNVVEIDAASNNGVENIRDIREQVQYPPTEGRYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRISLETIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
RLR + E I + AL ++A ++GS+RDA LLDQ G+ +T A E++G
Sbjct: 185 DRLRELTQAEQIQVEDKALLYVAKAADGSLRDALSLLDQCVAFHYGRVLTYDNALEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSN-------TVIRARELMRSKIDPMQLISQLANLIMDILA-- 584
V + + T + VI+ REL + D I + NL++ A
Sbjct: 245 VDSSVFSQMFGAIVEGRTRDCICSLEEIVIQGRELGQFVTD---FIWYMRNLLLIRSADD 301
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS- 643
+ L D SE +AD L R ++I SE QLR + + + VAL++L+
Sbjct: 302 AEGLVDMSEENLKQLRSDAGKADGTTLMRYIRIFSELSNQLRYASQKRVLVEVALIKLTR 361
Query: 644 -SSESSLD 650
S E +LD
Sbjct: 362 PSMEPNLD 369
>gi|417904260|ref|ZP_12548089.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21269]
gi|341847806|gb|EGS88979.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21269]
Length = 555
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|384549342|ref|YP_005738594.1| DNA-directed DNA polymerase III subunit gamma and tau
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302332191|gb|ADL22384.1| DNA-directed DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 565
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALNHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|404483671|ref|ZP_11018888.1| DNA polymerase III, subunit gamma and tau [Clostridiales bacterium
OBRC5-5]
gi|404343030|gb|EJZ69397.1| DNA polymerase III, subunit gamma and tau [Clostridiales bacterium
OBRC5-5]
Length = 519
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 192/366 (52%), Gaps = 22/366 (6%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ FDE+VGQ + R+L + + G ++ YLF G RGTGKTS ++I A ALNC
Sbjct: 5 ALYRKFRPSNFDEVVGQEAITRTLKNQLKTGRISHAYLFCGTRGTGKTSIAKIMARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D PC C C S S +V E+D+ N D + + + PP ++K+FI
Sbjct: 65 ENPTDAGPCNECPTCKSILSEASINVVEIDAASNNGVDNIREIKEQVQYPPTFGKYKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E+ KLP + LSR Q+Y F +I I+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQYVIFILATTEVHKLPVTVLSRCQRYDFKRIGIDTIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
RL+ +C E ++ + AL++IA ++G++RDA LLD+ +S L +KI+ +++G
Sbjct: 185 ERLKSLCKSEGVDIEDRALEYIAKSADGAMRDALSLLDECISFLQNEKISYEAVLDILGA 244
Query: 534 VSDDELLDLLDLALSSDT-------SNTVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
+LLD L +T +N++I +E+ Q ++ + +IL K
Sbjct: 245 SDISVFNELLDGVLEGNTIEVLNLLNNSIIDGKEI-------GQFVTDFLWYLRNILILK 297
Query: 587 ------CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL 640
L D SE + + + L R ++ LSE +L+ + + + +
Sbjct: 298 STQNDSSLVDMSEQNLQNLKEKANTVSKETLMRYIRNLSELSNKLKTATQKRVVAELEFI 357
Query: 641 QLSSSE 646
+L + E
Sbjct: 358 RLMTPE 363
>gi|418558787|ref|ZP_13123336.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21252]
gi|418993186|ref|ZP_13540827.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG290]
gi|371976964|gb|EHO94248.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21252]
gi|377748171|gb|EHT72134.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG290]
Length = 565
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALNHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|268318150|ref|YP_003291869.1| DNA polymerase III subunits gamma and tau [Rhodothermus marinus DSM
4252]
gi|262335684|gb|ACY49481.1| DNA polymerase III, subunits gamma and tau [Rhodothermus marinus
DSM 4252]
Length = 610
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 192/366 (52%), Gaps = 11/366 (3%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F ELV Q V +L +A+ + YLF GPRG GKT+A+R+ A A+NC +
Sbjct: 10 ARKYRPQLFRELVAQEHVTETLKNALRLNRLGHAYLFSGPRGVGKTTAARLLAKAINCQT 69
Query: 358 -LEDQK----PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
LE+++ PC C C F GRS +V E+D+ N+ + V L ++ +PP +R K
Sbjct: 70 PLEEREDHAEPCRRCEACVAFEEGRSLNVFEIDAASNNKVEDVRELRETVRVPPQGARKK 129
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
++IIDE +L + +L +LE H +F+ T E K+ + LSR Q++ F +I
Sbjct: 130 VYIIDEVHMLSNAAFNALLKTLEEPPPHALFIFATTEPHKVLPTILSRCQRFDFRRIPVE 189
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELI 531
I +RLR ICV E + D +L +A K +G++RDA DQ +SL G + + + +
Sbjct: 190 AIVARLREICVAEGVEADDESLMLLARKGDGALRDALSAFDQAVSLCGTTLRYAELAQAL 249
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
G+V D + D + + + +++RS D + LA + ++L + + D
Sbjct: 250 GVVDLDLYFAVTDHVREGNGAGMLAVVEQVVRSGYDLQEFAIGLAEHLRNLLVARTMPDL 309
Query: 592 S-----EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
S EA + + + + L R L ++++ E +L+ S L + LL+++S
Sbjct: 310 SLIEAGEATRRRYAEAAQAFEEADLLRLLGLVADLESRLKSSAQPRLQLELTLLRMASLP 369
Query: 647 SSLDLN 652
++DL
Sbjct: 370 HAVDLR 375
>gi|431065023|ref|ZP_19493846.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1604]
gi|431099267|ref|ZP_19496433.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1613]
gi|430568643|gb|ELB07682.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1604]
gi|430570768|gb|ELB09707.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1613]
Length = 581
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 190/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ + L + + + +++ + + + + + D+L A +E+
Sbjct: 245 TDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQQAPNLVEE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + ++L +KILS+T+ ++R + +L VA ++L+
Sbjct: 305 QSSTIRSTFTELAQTVSAEQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|425054481|ref|ZP_18457987.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
505]
gi|403035795|gb|EJY47178.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
505]
Length = 581
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 191/357 (53%), Gaps = 13/357 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
+D +++D LS+ V A E + + + ++ NL+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRNLLMYQQAPN 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 301 LVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|384546756|ref|YP_005736009.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus ED133]
gi|298693807|gb|ADI97029.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus ED133]
Length = 565
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|57651359|ref|YP_185408.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus COL]
gi|151220654|ref|YP_001331476.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
aureus str. Newman]
gi|221142547|ref|ZP_03567040.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|258452484|ref|ZP_05700492.1| DNA polymerase III gamma subunit [Staphylococcus aureus A5948]
gi|262049732|ref|ZP_06022598.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
D30]
gi|262051991|ref|ZP_06024203.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
930918-3]
gi|282924528|ref|ZP_06332198.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9765]
gi|284023487|ref|ZP_06377885.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
aureus 132]
gi|379013759|ref|YP_005289995.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus VC40]
gi|384861139|ref|YP_005743859.1| DNA-directed DNA polymerase III subunit gamma and tau
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384869061|ref|YP_005751775.1| DNA polymerase III subunit gamma [Staphylococcus aureus subsp.
aureus T0131]
gi|387142166|ref|YP_005730559.1| DNA polymerase III subunit tau [Staphylococcus aureus subsp. aureus
TW20]
gi|415688834|ref|ZP_11452382.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
aureus CGS01]
gi|417650005|ref|ZP_12299786.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21189]
gi|417654533|ref|ZP_12304251.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21193]
gi|417797823|ref|ZP_12445012.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21305]
gi|418280777|ref|ZP_12893603.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21178]
gi|418284788|ref|ZP_12897494.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21209]
gi|418317350|ref|ZP_12928770.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21232]
gi|418569600|ref|ZP_13133921.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21283]
gi|418578403|ref|ZP_13142499.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418640584|ref|ZP_13202807.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-24]
gi|418647244|ref|ZP_13209315.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-88]
gi|418658471|ref|ZP_13220194.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-111]
gi|418873392|ref|ZP_13427689.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-125]
gi|418905118|ref|ZP_13459146.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418926272|ref|ZP_13480170.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418927790|ref|ZP_13481678.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418947531|ref|ZP_13499893.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-157]
gi|418953332|ref|ZP_13505332.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-189]
gi|424784328|ref|ZP_18211140.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
CN79]
gi|440706789|ref|ZP_20887512.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21282]
gi|440736472|ref|ZP_20916073.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|57285545|gb|AAW37639.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus COL]
gi|150373454|dbj|BAF66714.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
aureus str. Newman]
gi|257859884|gb|EEV82724.1| DNA polymerase III gamma subunit [Staphylococcus aureus A5948]
gi|259160120|gb|EEW45152.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
930918-3]
gi|259162194|gb|EEW46770.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
D30]
gi|269940049|emb|CBI48425.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus TW20]
gi|282592837|gb|EFB97842.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9765]
gi|302750368|gb|ADL64545.1| DNA-directed DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|315196724|gb|EFU27070.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
aureus CGS01]
gi|329313196|gb|AEB87609.1| DNA polymerase III gamma subunit [Staphylococcus aureus subsp.
aureus T0131]
gi|329725115|gb|EGG61608.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21189]
gi|329730706|gb|EGG67087.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21193]
gi|334265821|gb|EGL84313.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21305]
gi|365167621|gb|EHM59003.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21178]
gi|365172545|gb|EHM63228.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21209]
gi|365245431|gb|EHM86069.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21232]
gi|371985506|gb|EHP02572.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21283]
gi|374362456|gb|AEZ36561.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus VC40]
gi|375020832|gb|EHS14344.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-24]
gi|375030576|gb|EHS23887.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-88]
gi|375038443|gb|EHS31424.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366228|gb|EHS70238.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-125]
gi|375375291|gb|EHS78879.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-189]
gi|375375452|gb|EHS79032.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-157]
gi|377698301|gb|EHT22651.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377739823|gb|EHT63827.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377741692|gb|EHT65679.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377765876|gb|EHT89723.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|421957293|gb|EKU09615.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
CN79]
gi|436430239|gb|ELP27603.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436506757|gb|ELP42524.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21282]
Length = 565
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|320104515|ref|YP_004180106.1| DNA polymerase III subunits gamma and tau [Isosphaera pallida ATCC
43644]
gi|319751797|gb|ADV63557.1| DNA polymerase III, subunits gamma and tau [Isosphaera pallida ATCC
43644]
Length = 662
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 192/384 (50%), Gaps = 6/384 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
+++++RP F ++VGQ+ VVR+L +AI VT YLF G RG GKTS +RIFA LNC
Sbjct: 24 VARRYRPQSFADVVGQDHVVRALSNAIIHHRVTHAYLFCGTRGVGKTSMARIFAKCLNCE 83
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+PC +C C S G+ DV E+D N D V L ++A L P +R+KI+ I
Sbjct: 84 RGPTVEPCQVCDICRAISVGQDVDVIEIDGASNNGVDAVRELRQNAGLRPSRARYKIYYI 143
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE +HV F+ T E K+P + LSR Q+Y F I I
Sbjct: 144 DEVHMLTTGAFNALLKTLEEPPEHVKFIFATTEAHKIPITVLSRCQRYDFASITPDTIQQ 203
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L IC E I + AL +A +++GS+RDA+ LL+QL G+ +T+ + ++L+G
Sbjct: 204 SLAAICQREGIAAESEALRVVARRASGSMRDAQSLLEQLLSSGQSPLTVEMVHQLLGTPD 263
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL-----AGKCLED 590
D+ L++LD + + + + LI+ L + + D++ A L
Sbjct: 264 DELTLEILDALAGQRAGEALCLFDQAAGRGVQALDLINSLMDALRDVMTLAAGAPTRLLS 323
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
S + + + + AL++ SE +LR S H + L++++ E +
Sbjct: 324 SSPRHHDRLKRIATTWGLDTTLAALQVASEARGKLRGSLHGRLIAEMTLVRIARLERLVA 383
Query: 651 LNDSKLCLRYAHDKDGDSHCTISP 674
L+D L D H +P
Sbjct: 384 LSDLIAHLSLGEPLDPTRHFDFNP 407
>gi|49482703|ref|YP_039927.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257424588|ref|ZP_05601017.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427254|ref|ZP_05603656.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257429890|ref|ZP_05606277.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397]
gi|257432593|ref|ZP_05608956.1| DNA polymerase III [Staphylococcus aureus subsp. aureus E1410]
gi|257435498|ref|ZP_05611549.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M876]
gi|282903061|ref|ZP_06310954.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus C160]
gi|282907450|ref|ZP_06315298.1| DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260]
gi|282907798|ref|ZP_06315638.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282912683|ref|ZP_06320479.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282913303|ref|ZP_06321095.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus M899]
gi|282918257|ref|ZP_06325998.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus C427]
gi|282922931|ref|ZP_06330621.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus C101]
gi|283959906|ref|ZP_06377347.1| DNA polymerase III [Staphylococcus aureus subsp. aureus A017934/97]
gi|293498350|ref|ZP_06666204.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509291|ref|ZP_06668008.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M809]
gi|293550558|ref|ZP_06673230.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus M1015]
gi|295427009|ref|ZP_06819648.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297588779|ref|ZP_06947420.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
subsp. aureus MN8]
gi|384865930|ref|YP_005746126.1| DNA polymerase III subunit gamma/tau DnaX [Staphylococcus aureus
subsp. aureus TCH60]
gi|415685081|ref|ZP_11450072.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus CGS00]
gi|417888618|ref|ZP_12532722.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21195]
gi|417897205|ref|ZP_12541143.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21235]
gi|418566125|ref|ZP_13130512.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21264]
gi|418581147|ref|ZP_13145232.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418596287|ref|ZP_13159853.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21342]
gi|418601237|ref|ZP_13164676.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21345]
gi|418891042|ref|ZP_13445161.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418899861|ref|ZP_13453921.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418909686|ref|ZP_13463678.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG149]
gi|418916321|ref|ZP_13470285.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922104|ref|ZP_13476023.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418981379|ref|ZP_13529095.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418984973|ref|ZP_13532665.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1500]
gi|49240832|emb|CAG39499.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257273606|gb|EEV05708.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257276885|gb|EEV08336.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257280371|gb|EEV10958.1| DNA polymerase III [Staphylococcus aureus subsp. aureus 68-397]
gi|257283472|gb|EEV13604.1| DNA polymerase III [Staphylococcus aureus subsp. aureus E1410]
gi|257286094|gb|EEV16210.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M876]
gi|282315152|gb|EFB45538.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus C101]
gi|282317954|gb|EFB48322.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus C427]
gi|282323403|gb|EFB53722.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus M899]
gi|282324379|gb|EFB54695.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282328362|gb|EFB58635.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330349|gb|EFB59870.1| DNA polymerase III [Staphylococcus aureus subsp. aureus Btn1260]
gi|282597520|gb|EFC02479.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus C160]
gi|283789498|gb|EFC28325.1| DNA polymerase III [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919605|gb|EFD96681.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus M1015]
gi|291097281|gb|EFE27539.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467930|gb|EFF10439.1| DNA polymerase III [Staphylococcus aureus subsp. aureus M809]
gi|295129461|gb|EFG59088.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297577290|gb|EFH96003.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
subsp. aureus MN8]
gi|312436435|gb|ADQ75506.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
subsp. aureus TCH60]
gi|315193216|gb|EFU23615.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus CGS00]
gi|341839847|gb|EGS81400.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21235]
gi|341854563|gb|EGS95432.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21195]
gi|371971565|gb|EHO88963.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21264]
gi|374398347|gb|EHQ69529.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21342]
gi|374399203|gb|EHQ70346.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21345]
gi|377705392|gb|EHT29698.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377708650|gb|EHT32939.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377708700|gb|EHT32988.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377712942|gb|EHT37158.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377733116|gb|EHT57162.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736377|gb|EHT60399.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750940|gb|EHT74875.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG149]
gi|377752550|gb|EHT76473.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1267]
Length = 565
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|340353634|ref|ZP_08676445.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella pallens ATCC
700821]
gi|339609056|gb|EGQ13933.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella pallens ATCC
700821]
Length = 594
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 191/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F +VGQ + +L++A+ + YLF GPRG GKT+ +RIFA A+NC
Sbjct: 8 ARKYRPMSFASVVGQQALTTTLMNAVKSKRLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+Q + C C C F+ GRS ++ E+D+ N + + +LM +PP R+K+FII
Sbjct: 68 PTEQGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKALMDQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ I
Sbjct: 128 DEVHMLSSAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVPGIID 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+++ +E I +++AAL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKKVAEKEGIVYEEAALNVIATKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D +++DL+L + ++ ++ D LI+ LA+ + D+L K L
Sbjct: 248 ADNYFNIVDLSLENKVPEIMVLLNNVINKGFDGGNLINGLASHVRDVLMAKDAQTLSLLA 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ + + ++ Q L +AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 TSNEQRQRYQQQAAKCPTQFLYKALEIMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|258444431|ref|ZP_05692765.1| DNA polymerase III gamma and tau [Staphylococcus aureus A8115]
gi|282893617|ref|ZP_06301850.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8117]
gi|443637260|ref|ZP_21121343.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21236]
gi|257850690|gb|EEV74638.1| DNA polymerase III gamma and tau [Staphylococcus aureus A8115]
gi|282764303|gb|EFC04430.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8117]
gi|443405987|gb|ELS64575.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21236]
Length = 565
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSADGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|430840662|ref|ZP_19458585.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1007]
gi|431594887|ref|ZP_19521993.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1861]
gi|431741960|ref|ZP_19530859.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2039]
gi|430494868|gb|ELA71086.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1007]
gi|430590813|gb|ELB28859.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1861]
gi|430600808|gb|ELB38435.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2039]
Length = 581
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 190/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ + L + + + +++ + + + + + D+L A +E+
Sbjct: 245 TDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQQAPNLVEE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + ++L +KILS+T+ ++R + +L VA ++L+
Sbjct: 305 QSSTIRSTFTELAQTVSAEQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|418426589|ref|ZP_12999618.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS2]
gi|387721249|gb|EIK09125.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS2]
Length = 565
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|430869945|ref|ZP_19483100.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1575]
gi|431183677|ref|ZP_19499985.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1620]
gi|431766012|ref|ZP_19554510.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E4215]
gi|430559322|gb|ELA98681.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1575]
gi|430573263|gb|ELB12087.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1620]
gi|430627345|gb|ELB63854.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E4215]
Length = 581
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|291523175|emb|CBK81468.1| DNA polymerase III, subunits gamma and tau [Coprococcus catus GD/7]
Length = 528
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 194/373 (52%), Gaps = 10/373 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP+ FDE+ GQ+ +V +L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPSNFDEVRGQDHIVTTLKNQIEMNRIGHAYLFCGTRGTGKTSIAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PC C C + RS +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVNGSPCNECAMCRAVNEQRSMNVIEIDAASNNGVDNIREIREEVAYSPSEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F +I G IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRISTGTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS--LLGKKITLSLAYELIGI 533
RLR + E I+ + AAL ++A ++GS+RDA LLDQ + +G+K+ +++G
Sbjct: 185 GRLRELADAEGIDAEDAALAYVARMADGSMRDALSLLDQCNAFYIGQKLKYENVLDVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGKC-- 587
V LL S D S + E++ D Q + L NL+M +G
Sbjct: 245 VDTSVFGSLLKSICSQDVSGVIHLIDEIVMQGRDLTQFVVDFTWYLRNLLMVQSSGDLTD 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSS 645
L + S + + S D L R ++I S+ Q+R S + + VAL++L +
Sbjct: 305 LVEASAEQLEVMRQEASGIDASVLMRYIRIFSDLSGQVRYSTQKRVLVEVALIKLCHPAM 364
Query: 646 ESSLDLNDSKLCL 658
E +LD ++L +
Sbjct: 365 ERNLDAVLNRLAI 377
>gi|212637866|ref|YP_002314386.1| DNA polymerase III subunits gamma and tau [Anoxybacillus
flavithermus WK1]
gi|212559346|gb|ACJ32401.1| DNA polymerase III tau subunit [Anoxybacillus flavithermus WK1]
Length = 559
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 194/372 (52%), Gaps = 15/372 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L +A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRVFRPQSFKDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSIAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C +G DV E+D+ N D + + P S+ +K++I
Sbjct: 65 EHRPTAEPCNECPTCLGIMNGSISDVLEIDAASNNGVDEIRDIRDKVKFAPTSAPYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I+ I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRCQRFDFRRIELKSIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SRL+ + EE I+ ++ AL IA ++G +RDA LLDQ +S ++ L + G V
Sbjct: 185 SRLKTVVTEEGIDVEEEALFAIARAADGGMRDALSLLDQAISFSDDRVLLEDVLAVTGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDC 591
S ++ DL+ T + ++LM DP +L+ L D+L A LED
Sbjct: 245 SQRKIADLIHAMYEKKTVEALRLFQDLMEQGKDPNRLVEDLIYYYRDMLLYKAAPQLEDV 304
Query: 592 SEARKNFFGKHTSEADMQKLS---RALKILSETEKQLRMSKHQTTWLTVALLQLSSSE-- 646
+ R + +DM S A+ +LS+++ +R++ H + V +++L E
Sbjct: 305 TH-RMLVDERFRELSDMIPTSFIYEAIDLLSKSQHDMRLTNHPRIHMEVTIVKLCYEEEH 363
Query: 647 -----SSLDLND 653
S LDL +
Sbjct: 364 AIKSTSYLDLEE 375
>gi|304380492|ref|ZP_07363170.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|418651839|ref|ZP_13213826.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-91]
gi|304341010|gb|EFM06932.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|375024099|gb|EHS17537.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-91]
Length = 555
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|291546690|emb|CBL19798.1| DNA polymerase III, subunits gamma and tau [Ruminococcus sp. SR1/5]
Length = 540
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 193/365 (52%), Gaps = 10/365 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ FD++ GQ+ +V +L + I + YLF G RGTGKT+ ++I A A+NC
Sbjct: 5 ALYRKFRPDNFDDVKGQDHIVTTLTNQIKANRIGHAYLFCGTRGTGKTTVAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PC C C +G + +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVNGSPCNECAMCKAIQAGTAMNVIEIDAASNNGVDNIREIREEVAYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFHRISIDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
+RL + E + ++ A+ ++A K +GS+RDA LLDQ +S LG+ +T +++G
Sbjct: 185 ARLSELLTAEGVEAEEKAVRYVAKKGDGSMRDALSLLDQCISFYLGQVLTYDKVLDVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
V + LL LS D + ++ +L+ + Q +S + ++L K E+ E
Sbjct: 245 VDTEVFSRLLRKVLSGDVTGSIHVLEDLITGGRELGQFVSDFTWYMRNLLLVKTSENPEE 304
Query: 594 A------RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSS 645
A + + D++ L R ++I S+ Q+R + + + +AL++L +
Sbjct: 305 AIDVSSENLKLLKEESGMTDVETLMRYIRIFSDLSNQIRFASQKRVLVEIALIKLCRPAM 364
Query: 646 ESSLD 650
E++LD
Sbjct: 365 ETNLD 369
>gi|258413427|ref|ZP_05681702.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
A9763]
gi|257839674|gb|EEV64143.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
A9763]
Length = 565
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|257879310|ref|ZP_05658963.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257881874|ref|ZP_05661527.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257890136|ref|ZP_05669789.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257893464|ref|ZP_05673117.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260558752|ref|ZP_05830941.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|261207347|ref|ZP_05922034.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289566854|ref|ZP_06447263.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF]
gi|293559588|ref|ZP_06676122.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162]
gi|293567583|ref|ZP_06678927.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071]
gi|294615746|ref|ZP_06695596.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636]
gi|294617671|ref|ZP_06697298.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679]
gi|294621753|ref|ZP_06700913.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317]
gi|314937928|ref|ZP_07845244.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133a04]
gi|314941419|ref|ZP_07848312.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133C]
gi|314951281|ref|ZP_07854335.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133A]
gi|314992888|ref|ZP_07858289.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133B]
gi|314998092|ref|ZP_07862980.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133a01]
gi|383328029|ref|YP_005353913.1| DNA polymerase III subunits gamma and tau [Enterococcus faecium
Aus0004]
gi|389867919|ref|YP_006375342.1| DNA-directed DNA polymerase III gamma and tau subunit [Enterococcus
faecium DO]
gi|406580409|ref|ZP_11055602.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD4E]
gi|406582756|ref|ZP_11057854.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD3E]
gi|406584901|ref|ZP_11059897.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD2E]
gi|406590284|ref|ZP_11064653.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD1E]
gi|410936961|ref|ZP_11368823.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD5E]
gi|415894560|ref|ZP_11550371.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E4453]
gi|416141903|ref|ZP_11599504.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E4452]
gi|424790834|ref|ZP_18217342.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
V689]
gi|424812981|ref|ZP_18238219.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
S447]
gi|424827103|ref|ZP_18251918.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R501]
gi|424862502|ref|ZP_18286443.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R499]
gi|424901218|ref|ZP_18324755.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R497]
gi|424951490|ref|ZP_18366580.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R496]
gi|424952400|ref|ZP_18367425.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R494]
gi|424956577|ref|ZP_18371348.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R446]
gi|424961912|ref|ZP_18376311.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1986]
gi|424964127|ref|ZP_18378268.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1190]
gi|424968411|ref|ZP_18382035.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1140]
gi|424969903|ref|ZP_18383448.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1139]
gi|424973266|ref|ZP_18386554.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1137]
gi|424978179|ref|ZP_18391125.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1123]
gi|424982017|ref|ZP_18394700.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV99]
gi|424984635|ref|ZP_18397162.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV69]
gi|424986322|ref|ZP_18398749.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV38]
gi|424990178|ref|ZP_18402402.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV26]
gi|424994764|ref|ZP_18406689.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV168]
gi|424999071|ref|ZP_18410718.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV165]
gi|425002357|ref|ZP_18413789.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV161]
gi|425005440|ref|ZP_18416682.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV102]
gi|425007814|ref|ZP_18418929.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV1]
gi|425009698|ref|ZP_18420692.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E422]
gi|425014471|ref|ZP_18425145.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E417]
gi|425019396|ref|ZP_18429764.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
C621]
gi|425019630|ref|ZP_18429978.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
C497]
gi|425023811|ref|ZP_18433906.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
C1904]
gi|425031193|ref|ZP_18436336.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
515]
gi|425036563|ref|ZP_18441305.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
514]
gi|425039071|ref|ZP_18443638.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
513]
gi|425043149|ref|ZP_18447412.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
511]
gi|425045511|ref|ZP_18449610.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
510]
gi|425048649|ref|ZP_18452540.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
509]
gi|425051510|ref|ZP_18455174.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
506]
gi|425061129|ref|ZP_18464394.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
503]
gi|427395470|ref|ZP_18888392.1| DNA polymerase III, subunit gamma and tau [Enterococcus durans
FB129-CNAB-4]
gi|430831476|ref|ZP_19449527.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0333]
gi|430844899|ref|ZP_19462796.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1050]
gi|430846826|ref|ZP_19464680.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1133]
gi|430856093|ref|ZP_19473797.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1392]
gi|430862306|ref|ZP_19479623.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1573]
gi|430963236|ref|ZP_19487528.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1576]
gi|431011155|ref|ZP_19489899.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1578]
gi|431237147|ref|ZP_19503290.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1622]
gi|431264082|ref|ZP_19505970.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1623]
gi|431290476|ref|ZP_19506611.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1626]
gi|431382826|ref|ZP_19511419.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1627]
gi|431522820|ref|ZP_19516769.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1634]
gi|431536385|ref|ZP_19517345.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1731]
gi|431701807|ref|ZP_19524916.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1904]
gi|431747937|ref|ZP_19536701.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2297]
gi|431754036|ref|ZP_19542701.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2883]
gi|431768719|ref|ZP_19557152.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1321]
gi|431770014|ref|ZP_19558417.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1644]
gi|431774458|ref|ZP_19562766.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2369]
gi|431776987|ref|ZP_19565244.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2560]
gi|431779250|ref|ZP_19567446.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E4389]
gi|431781294|ref|ZP_19569442.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E6012]
gi|431784925|ref|ZP_19572960.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E6045]
gi|447913415|ref|YP_007394827.1| DNA polymerase III subunits gamma and tau [Enterococcus faecium
NRRL B-2354]
gi|257813538|gb|EEV42296.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257817532|gb|EEV44860.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257826496|gb|EEV53122.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257829843|gb|EEV56450.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260075211|gb|EEW63524.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|260078407|gb|EEW66111.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289161342|gb|EFD09233.1| DNA-directed DNA polymerase [Enterococcus faecium D344SRF]
gi|291589684|gb|EFF21488.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1071]
gi|291591397|gb|EFF23056.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1636]
gi|291596078|gb|EFF27344.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1679]
gi|291598640|gb|EFF29697.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium U0317]
gi|291606464|gb|EFF35864.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1162]
gi|313587934|gb|EFR66779.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133a01]
gi|313592692|gb|EFR71537.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133B]
gi|313596498|gb|EFR75343.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133A]
gi|313599842|gb|EFR78685.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133C]
gi|313642786|gb|EFS07366.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0133a04]
gi|364089923|gb|EHM32565.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E4452]
gi|364092140|gb|EHM34540.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E4453]
gi|378937723|gb|AFC62795.1| DNA polymerase III subunits gamma and tau [Enterococcus faecium
Aus0004]
gi|388533168|gb|AFK58360.1| DNA-directed DNA polymerase III gamma and tau subunit [Enterococcus
faecium DO]
gi|402916588|gb|EJX37443.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
S447]
gi|402920389|gb|EJX40907.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
V689]
gi|402923547|gb|EJX43830.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R501]
gi|402925532|gb|EJX45666.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R499]
gi|402929810|gb|EJX49531.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R496]
gi|402931199|gb|EJX50790.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R497]
gi|402941413|gb|EJX60143.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R494]
gi|402942135|gb|EJX60764.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1986]
gi|402945687|gb|EJX64021.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
R446]
gi|402947541|gb|EJX65749.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1190]
gi|402952027|gb|EJX69887.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1140]
gi|402958902|gb|EJX76183.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1137]
gi|402961773|gb|EJX78768.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV99]
gi|402963005|gb|EJX79905.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1123]
gi|402963074|gb|EJX79968.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
P1139]
gi|402968394|gb|EJX84877.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV69]
gi|402976887|gb|EJX92740.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV38]
gi|402979157|gb|EJX94840.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV168]
gi|402980173|gb|EJX95800.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV26]
gi|402980902|gb|EJX96472.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV165]
gi|402983552|gb|EJX98939.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV161]
gi|402985990|gb|EJY01142.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV102]
gi|402994239|gb|EJY08782.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
ERV1]
gi|402998309|gb|EJY12572.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
C621]
gi|402998538|gb|EJY12787.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E417]
gi|403001952|gb|EJY15965.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E422]
gi|403008419|gb|EJY21923.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
C1904]
gi|403011181|gb|EJY24510.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
C497]
gi|403014104|gb|EJY27122.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
514]
gi|403016362|gb|EJY29186.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
515]
gi|403017465|gb|EJY30208.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
513]
gi|403020979|gb|EJY33463.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
511]
gi|403026808|gb|EJY38743.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
510]
gi|403029964|gb|EJY41684.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
509]
gi|403037470|gb|EJY48742.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
506]
gi|403042066|gb|EJY53042.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
503]
gi|404453786|gb|EKA00818.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD4E]
gi|404457746|gb|EKA04276.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD3E]
gi|404463120|gb|EKA08816.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD2E]
gi|404469353|gb|EKA14159.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD1E]
gi|410734554|gb|EKQ76473.1| DNA polymerase III subunits gamma and tau [Enterococcus sp. GMD5E]
gi|425723970|gb|EKU86856.1| DNA polymerase III, subunit gamma and tau [Enterococcus durans
FB129-CNAB-4]
gi|430481359|gb|ELA58515.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0333]
gi|430496330|gb|ELA72435.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1050]
gi|430538380|gb|ELA78672.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1133]
gi|430545382|gb|ELA85356.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1392]
gi|430548884|gb|ELA88731.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1573]
gi|430555661|gb|ELA95198.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1576]
gi|430560177|gb|ELA99483.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1578]
gi|430572711|gb|ELB11561.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1622]
gi|430576518|gb|ELB15169.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1623]
gi|430581197|gb|ELB19644.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1627]
gi|430582576|gb|ELB20998.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1626]
gi|430585002|gb|ELB23311.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1634]
gi|430594872|gb|ELB32824.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1731]
gi|430597092|gb|ELB34896.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1904]
gi|430614813|gb|ELB51784.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2297]
gi|430619959|gb|ELB56762.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2883]
gi|430628587|gb|ELB65021.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1321]
gi|430634207|gb|ELB70342.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2369]
gi|430635767|gb|ELB71846.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1644]
gi|430639928|gb|ELB75782.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2560]
gi|430642515|gb|ELB78292.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E4389]
gi|430648481|gb|ELB83887.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E6045]
gi|430649655|gb|ELB85023.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E6012]
gi|445189124|gb|AGE30766.1| DNA polymerase III subunits gamma and tau [Enterococcus faecium
NRRL B-2354]
Length = 581
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|366089951|ref|ZP_09456317.1| DNA polymerase III subunits gamma and tau [Lactobacillus
acidipiscis KCTC 13900]
Length = 596
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 198/360 (55%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD+LVGQ +V ++L +A+ + YLF GPRGTGKTSA++IF+ A+NC
Sbjct: 5 ALYRAWRPQKFDDLVGQELVTKTLKNALMTKQTSHAYLFTGPRGTGKTSAAKIFSKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC C C ++GR DV E+D+ N + + + P +KI+I
Sbjct: 65 HFQKDGEPCNECDTCTSITAGRQNDVIEIDAASNNGVEEIRDIRDKVKYAPTECDYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++VVF++ T E K+P + +SR+Q++ F +I+ I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPENVVFILATTEPHKIPATIISRTQRFDFRRIQPDTIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
R++ I ++ + + AAL IA + G +RDA +LDQ+ G ++TL A + G V
Sbjct: 185 QRMQYIVSQKQLKCEPAALKLIAKAAEGGMRDALSILDQVISFGNDEVTLDNALMVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+DELL L+ DT+ + +++ D + I L + D+L + + + E
Sbjct: 245 QNDELLQYLEQVTQKDTAKALEILHQILNDGKDAARFIEDLISFCRDLLLYQQMPEKVEN 304
Query: 594 ----ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ F + + +++ + + +L+E ++ +R + H + +L V ++L++ ++++
Sbjct: 305 DELNVVNDDFRNFSQKIKPEEIYQMIDLLNEQQENMRFTSHASIYLEVLTVKLATRQTTI 364
>gi|314948526|ref|ZP_07851906.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0082]
gi|313645023|gb|EFS09603.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
TX0082]
Length = 581
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|15923468|ref|NP_371002.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus Mu50]
gi|15926155|ref|NP_373688.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus N315]
gi|148266936|ref|YP_001245879.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus JH9]
gi|150392982|ref|YP_001315657.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus JH1]
gi|156978806|ref|YP_001441065.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus Mu3]
gi|253315726|ref|ZP_04838939.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|255005271|ref|ZP_05143872.2| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257795401|ref|ZP_05644380.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
A9781]
gi|258421451|ref|ZP_05684378.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9719]
gi|258436850|ref|ZP_05689190.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9299]
gi|258445643|ref|ZP_05693823.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6300]
gi|258456009|ref|ZP_05703964.1| DNA polymerase III gamma and tau [Staphylococcus aureus A5937]
gi|282927511|ref|ZP_06335129.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A10102]
gi|295405726|ref|ZP_06815536.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8819]
gi|296276913|ref|ZP_06859420.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus MR1]
gi|297245635|ref|ZP_06929503.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8796]
gi|384863806|ref|YP_005749165.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|387149638|ref|YP_005741202.1| DNA polymerase III subunits gamma and Tau [Staphylococcus aureus
04-02981]
gi|415692559|ref|ZP_11454520.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus CGS03]
gi|417651920|ref|ZP_12301676.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21172]
gi|417802104|ref|ZP_12449175.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21318]
gi|417893352|ref|ZP_12537385.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21201]
gi|417898552|ref|ZP_12542471.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21259]
gi|417900414|ref|ZP_12544299.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21266]
gi|418315502|ref|ZP_12926963.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21340]
gi|418320879|ref|ZP_12932233.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VCU006]
gi|418423646|ref|ZP_12996796.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS1]
gi|418429516|ref|ZP_13002451.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418432411|ref|ZP_13005214.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS4]
gi|418436125|ref|ZP_13007945.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS5]
gi|418439022|ref|ZP_13010747.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS6]
gi|418442002|ref|ZP_13013623.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS7]
gi|418445129|ref|ZP_13016624.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS8]
gi|418448072|ref|ZP_13019481.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS9]
gi|418450897|ref|ZP_13022242.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS10]
gi|418453913|ref|ZP_13025189.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418456819|ref|ZP_13028036.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418562071|ref|ZP_13126539.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21262]
gi|418567799|ref|ZP_13132163.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21272]
gi|418598141|ref|ZP_13161654.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21343]
gi|418639010|ref|ZP_13201280.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-3]
gi|418652518|ref|ZP_13214485.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-99]
gi|418661921|ref|ZP_13223484.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-122]
gi|418877362|ref|ZP_13431602.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880179|ref|ZP_13434401.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883107|ref|ZP_13437309.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418885769|ref|ZP_13439921.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418893934|ref|ZP_13448037.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418913704|ref|ZP_13467678.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418919290|ref|ZP_13473238.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIGC348]
gi|419784217|ref|ZP_14309992.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-M]
gi|13700368|dbj|BAB41666.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus N315]
gi|14246246|dbj|BAB56640.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus Mu50]
gi|147740005|gb|ABQ48303.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus JH9]
gi|149945434|gb|ABR51370.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
subsp. aureus JH1]
gi|156720941|dbj|BAF77358.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus Mu3]
gi|257789373|gb|EEV27713.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
A9781]
gi|257842875|gb|EEV67297.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9719]
gi|257848641|gb|EEV72628.1| DNA polymerase III gamma and tau [Staphylococcus aureus A9299]
gi|257855593|gb|EEV78528.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6300]
gi|257862221|gb|EEV84994.1| DNA polymerase III gamma and tau [Staphylococcus aureus A5937]
gi|282590835|gb|EFB95911.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A10102]
gi|285816177|gb|ADC36664.1| DNA polymerase III subunits gamma and Tau [Staphylococcus aureus
04-02981]
gi|294969801|gb|EFG45820.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8819]
gi|297177621|gb|EFH36872.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A8796]
gi|312828973|emb|CBX33815.1| DNA polymerase III, subunits gamma and tau [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130108|gb|EFT86097.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus CGS03]
gi|329725750|gb|EGG62229.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21172]
gi|334275398|gb|EGL93688.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21318]
gi|341848064|gb|EGS89232.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21266]
gi|341848074|gb|EGS89241.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21259]
gi|341855202|gb|EGS96053.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21201]
gi|365226669|gb|EHM67885.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VCU006]
gi|365243444|gb|EHM84123.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21340]
gi|371974719|gb|EHO92037.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21262]
gi|371982444|gb|EHO99604.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21272]
gi|374400204|gb|EHQ71326.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21343]
gi|375019636|gb|EHS13188.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-3]
gi|375021873|gb|EHS15368.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-99]
gi|375037548|gb|EHS30572.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-122]
gi|377698057|gb|EHT22410.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377700451|gb|EHT24790.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377717333|gb|EHT41510.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377727667|gb|EHT51771.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377733937|gb|EHT57978.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377759747|gb|EHT83628.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377768342|gb|EHT92127.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIGC348]
gi|383364421|gb|EID41735.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-M]
gi|387721306|gb|EIK09180.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387722788|gb|EIK10572.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS1]
gi|387727870|gb|EIK15373.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS4]
gi|387729704|gb|EIK17126.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS5]
gi|387731814|gb|EIK19072.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS6]
gi|387738698|gb|EIK25726.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS8]
gi|387739981|gb|EIK26962.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS9]
gi|387740344|gb|EIK27304.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus VRS7]
gi|387747645|gb|EIK34352.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS10]
gi|387748497|gb|EIK35173.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387749293|gb|EIK35928.1| DNA polymerase III, gamma and tau [Staphylococcus aureus subsp.
aureus VRS11b]
Length = 565
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|427737214|ref|YP_007056758.1| DNA polymerase III subunits gamma and tau [Rivularia sp. PCC 7116]
gi|427372255|gb|AFY56211.1| DNA polymerase III, subunit gamma/tau [Rivularia sp. PCC 7116]
Length = 680
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 192/360 (53%), Gaps = 10/360 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKTFAELVGQEAIATTLTNAIHTLKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + +PCG C C + G + DV E+D+ D + +++ A P R+K++
Sbjct: 66 NSDKPTSQPCGKCDVCQGINKGATLDVIEIDAASNTGVDNIREIIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + + +L +LE HVVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 VVDECHMLSTQAFNALLKTLEEPPLHVVFVLATTDPQRVLPTIISRCQRFDFRRIPMDGM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E I+ + A+ +A S G +RDA+ LLDQLSLL ++ ++L+G V
Sbjct: 186 VQHLTTIAAQENIDITKEAVTLVAQVSQGGLRDAQSLLDQLSLLSGQVIPEKVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
S+ LL+LL A+ SD S VI R+++ +P+ ++ LA+ D+L K
Sbjct: 246 SEQGLLELLK-AIISDNSEAVIDSTRQILDRGREPLIILQNLASFYRDLLIAKTAPSRND 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L C++A ++ + + + L E Q++ + WL V LL L S +
Sbjct: 305 LVACTQAMWKVLIDVAQSLEISMILQGQQHLRAAEVQIKNTTQPRLWLEVTLLGLLPSAT 364
>gi|385813178|ref|YP_005849571.1| DNA polymerase III [Lactobacillus helveticus H10]
gi|323465897|gb|ADX69584.1| DNA polymerase III [Lactobacillus helveticus H10]
Length = 595
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 134/220 (60%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL 515
R++ I +E I ++ AL IA ++G +RDA +LDQL
Sbjct: 185 KRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQL 224
>gi|257885058|ref|ZP_05664711.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|430853569|ref|ZP_19471297.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1258]
gi|257820910|gb|EEV48044.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|430540650|gb|ELA80852.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1258]
Length = 581
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|227824621|ref|ZP_03989453.1| DNA polymerase III [Acidaminococcus sp. D21]
gi|226905120|gb|EEH91038.1| DNA polymerase III [Acidaminococcus sp. D21]
Length = 628
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 158/288 (54%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD LVGQ + ++L +A+ G ++ YLF GPRGTGKTS +RI A ALNC
Sbjct: 5 ALYRTWRPQDFDGLVGQEHIRKALTNALESGRISHAYLFTGPRGTGKTSTARILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C + G S DV E+D+ D + L + P SSR+K++I
Sbjct: 65 EKGPTPHPCNTCDHCREITEGTSADVIEIDAASNRGIDEIRKLREQVHFAPVSSRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ + + +L +LE +HVVF++ T E K+P + SR Q++ F ++ DIA
Sbjct: 125 IDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQRFDFRRVTVDDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ L+++ IN + AL +A +++G +RDA LLDQ S++ +T +++GI
Sbjct: 185 AHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMANPVTAETVRQVLGIAG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
D + L++ D + +LM D Q++++L + +L
Sbjct: 245 RDTMRALVEKIGRRDLPAALDLLNQLMDDGKDVTQVLTELLEYMRALL 292
>gi|387779615|ref|YP_005754413.1| DNA polymerase III subunit tau [Staphylococcus aureus subsp. aureus
LGA251]
gi|344176717|emb|CCC87179.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus LGA251]
Length = 565
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|386728233|ref|YP_006194616.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus 71193]
gi|387601832|ref|YP_005733353.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus ST398]
gi|404477859|ref|YP_006709289.1| DNA polymerase III subunit tau [Staphylococcus aureus 08BA02176]
gi|418310317|ref|ZP_12921863.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21331]
gi|418979787|ref|ZP_13527578.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus DR10]
gi|283469770|emb|CAQ48981.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus ST398]
gi|365237104|gb|EHM77968.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21331]
gi|379992371|gb|EIA13825.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus DR10]
gi|384229526|gb|AFH68773.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus 71193]
gi|404439348|gb|AFR72541.1| DNA polymerase III, tau subunit [Staphylococcus aureus 08BA02176]
Length = 565
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|294850658|ref|ZP_06791381.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9754]
gi|294822495|gb|EFG38941.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus A9754]
Length = 565
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|418313550|ref|ZP_12925038.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21334]
gi|365235902|gb|EHM76812.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21334]
Length = 565
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|430821692|ref|ZP_19440283.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0045]
gi|430438174|gb|ELA48647.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0045]
Length = 581
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|357060091|ref|ZP_09120865.1| hypothetical protein HMPREF9332_00422 [Alloprevotella rava F0323]
gi|355376981|gb|EHG24221.1| hypothetical protein HMPREF9332_00422 [Alloprevotella rava F0323]
Length = 583
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 192/357 (53%), Gaps = 7/357 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ + +L +AIS G + YLF GPRG GKT+ +RIFA +NCLS
Sbjct: 8 ARKYRPQTFDSVVGQKALTTTLKNAISNGKLAHAYLFCGPRGVGKTTCARIFAKTINCLS 67
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + C C C F+ GRS ++ E+D+ N D + +++ PP +K+FII
Sbjct: 68 PQASGEACNECESCQAFNEGRSMNIFELDAASNNSVDDIRQIIEQVNTPPQVGTYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F +++ DI +
Sbjct: 128 DEVHMLSAAAFNAFLKTLEEPPAHVIFILATTEKHKVLPTILSRCQIYDFNRMEIADIVA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E + ++ AL+ IA K++G +RDA + DQ++ + IT E + ++
Sbjct: 188 HLKNVAAKEGVQAEEEALNVIAQKADGGMRDALSIFDQVASFSEGDITYCKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D + D L+++ + ++ +++R D + LA+ ++L + L +
Sbjct: 248 YDYYFKITDELLANNVTQVMLTFNDILRKGFDANIFMGGLASHFRELLVSQDAATLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+++ + + K + + L +ALK+ ++ + R S+++ + + L++++ S
Sbjct: 308 VADSVRQRYAKQAQKCKTKFLYKALKLCNDCDINYRTSRNKRLTVEITLIEVAQLNS 364
>gi|373953550|ref|ZP_09613510.1| DNA polymerase III, subunits gamma and tau [Mucilaginibacter
paludis DSM 18603]
gi|373890150|gb|EHQ26047.1| DNA polymerase III, subunits gamma and tau [Mucilaginibacter
paludis DSM 18603]
Length = 600
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 193/361 (53%), Gaps = 7/361 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ + +L +AI + +LF GPRG GKT+ +RI A +NC +
Sbjct: 8 ARKYRPVTFDTVVGQQHITNTLKNAIKNNQLAQAFLFCGPRGVGKTTCARILAKTINCTN 67
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L+ + CG C C F G S +V E+D+ N + + SL++ +PP + ++KI+II
Sbjct: 68 LQAGIEACGECDSCKAFQRGNSFNVHELDAASNNSVEDIRSLIEQVRIPPQAGKYKIYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE + +F++ T E K+ + LSR Q + F +IK D+A
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIKVDDMAG 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L I +E+I ++ L IA K++G +RDA + DQ+ + G +T + + I+
Sbjct: 188 HLASIAQKESIGYEVDGLHIIAQKADGGLRDALSMFDQIVNFSGGNVTYRSVIDNLNILD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE-----D 590
D ++ LS DT+ T++ E++ D IS L + ++L GK E +
Sbjct: 248 YDYYFNVTQSLLSEDTAKTLLLFDEILSKGFDGSHFISGLTEHLRNLLVGKDAETLKLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
SE + + + + A + L A+ I ++ + ++SK+Q + +ALL++ ++L+
Sbjct: 308 VSEGIRKKYIEQSQAATVSFLLSAMNIANQCDLNYKLSKNQRLQVELALLKMCHIMAALN 367
Query: 651 L 651
L
Sbjct: 368 L 368
>gi|402313921|ref|ZP_10832829.1| DNA polymerase III, subunit gamma and tau [Lachnospiraceae
bacterium ICM7]
gi|400365291|gb|EJP18346.1| DNA polymerase III, subunit gamma and tau [Lachnospiraceae
bacterium ICM7]
Length = 519
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 192/366 (52%), Gaps = 22/366 (6%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ FDE+VGQ + R+L + + G ++ YLF G RGTGKTS ++I A ALNC
Sbjct: 5 ALYRKFRPSNFDEVVGQEAITRTLKNQLKTGRISHAYLFCGTRGTGKTSIAKIMARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D PC C C S S +V E+D+ N D + + + PP ++K+FI
Sbjct: 65 ENPTDAGPCNECPTCKSILSEASINVVEIDAASNNGVDNIRDIKEQVQYPPTFGKYKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E+ KLP + LSR Q+Y F +I I+
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPQYVIFILATTEVHKLPVTVLSRCQRYDFKRIGIDTIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
RL+ +C E ++ + AL++IA ++G++RDA LLD+ +S L +KI+ +++G
Sbjct: 185 ERLKSLCKSEGVDIEDRALEYIAKSADGAMRDALSLLDECISFLQNEKISYEAVLDILGA 244
Query: 534 VSDDELLDLLDLALSSDT-------SNTVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
+LLD L +T +N++I +E+ Q ++ + +IL K
Sbjct: 245 SDISVFNELLDGVLEGNTIEVLNLLNNSIIDGKEI-------GQFVTDFLWYLRNILILK 297
Query: 587 ------CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL 640
L D SE + + + L R ++ LSE +L+ + + + +
Sbjct: 298 STQNDSSLVDMSEQNLQNLKEKANTVSKETLMRYIRNLSELSNKLKTATQKRVVAELEFI 357
Query: 641 QLSSSE 646
+L + E
Sbjct: 358 RLMTPE 363
>gi|241895204|ref|ZP_04782500.1| DNA-directed DNA polymerase [Weissella paramesenteroides ATCC
33313]
gi|241871510|gb|EER75261.1| DNA-directed DNA polymerase [Weissella paramesenteroides ATCC
33313]
Length = 588
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 186/354 (52%), Gaps = 2/354 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ +V ++L +AI G +T YLF+GPRGTGKTSA++IFA A+NC
Sbjct: 12 ALYRTWRPQKFSDMIGQEIVTKTLKNAIITGQITHAYLFNGPRGTGKTSAAKIFAKAINC 71
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +P G C C +G D+ E+D+ N D + + + P +++K++I
Sbjct: 72 LHPVDGEPDGTCEICQAADNGTLGDIIELDAASNNGVDEIREIREDVTYAPTRAKYKVYI 131
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 132 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPATIISRTQRFDFKRINAQSAY 191
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I + +D+AAL IA ++G +RDA +LDQ LS +TL A + G V
Sbjct: 192 ERMVYILNQRGNTYDEAALKVIANAADGGMRDALSILDQALSFGDGHVTLDNALLVTGSV 251
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
+ L + ++ ++ DT + + E++ D + + L + D+L + E +
Sbjct: 252 TQTLLGNYVEAVVNQDTKQGLAKLSEVLDEGKDANRFVEDLISYARDLLLYTEAPELVTL 311
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
F + + + L+ET++QLR + +L V ++LS S
Sbjct: 312 VPDETFTQLAKDQSANVWYNMIDTLNETQQQLRFTNRPAIYLEVLTVKLSQPTS 365
>gi|421149276|ref|ZP_15608935.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|394331378|gb|EJE57466.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus str. Newbould 305]
Length = 557
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 180/344 (52%), Gaps = 7/344 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NCL+ D
Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E+D+ N D + ++ P S++K++IIDE
Sbjct: 62 GEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVH 121
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H +F++ T E K+P + +SR+Q++ F I I RL+
Sbjct: 122 MLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLNQIVERLKF 181
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVSDDEL 539
+ + I + AL FIA S G +RDA ++DQ G +TL A + G V D+ L
Sbjct: 182 VADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSVHDEAL 241
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
L D + D + + + + + +LI+ + + D + K E +E R
Sbjct: 242 DHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEYR---- 297
Query: 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E DM L + + ++++T +R S +Q V L++L+
Sbjct: 298 ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 339
>gi|300853305|ref|YP_003778289.1| DNA polymerase III subunit gamma/tau [Clostridium ljungdahlii DSM
13528]
gi|300433420|gb|ADK13187.1| DNA polymerase III subunit gamma/tau [Clostridium ljungdahlii DSM
13528]
Length = 553
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 199/361 (55%), Gaps = 8/361 (2%)
Query: 294 PWS-LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
P++ L +++RP F ++VGQ+ + +L + I + YLF G RGTGKTS ++I A A
Sbjct: 2 PYTALYREWRPKTFSDVVGQDHITVTLKNQILNHRIAHAYLFSGTRGTGKTSTAKILAKA 61
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
+NCL+L+D +PC C C ++G S DV E+D+ R + + ++++ PP ++K
Sbjct: 62 VNCLNLQDGEPCNECEMCKKINAGISIDVIEMDAASKRRLEDIKDVIENVKYPPQEGKYK 121
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
++I+DE +L E L +LE +V+F++ T + KLP + LSR QK+ F +IK
Sbjct: 122 VYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFDFRRIKSS 181
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELI 531
+I +RLR I E+ I D +L+ IA +G++RDA +LDQ +S+ K+ ++
Sbjct: 182 EIFNRLRCIVSEQGIFADDRSLNLIARICDGAMRDALSILDQAISMGNGKVEYDDVVNML 241
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---- 587
G+V+++ LL L D + + +++ +++ S D I L + ++L K
Sbjct: 242 GLVTNENLLRLTDSIIEKNVESSMRVIDDIVLSGKDIFNFIKDLIIHLRNLLMVKVSNNP 301
Query: 588 --LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ D SE N + ++++ R ++IL + ++Q + +K +L ++ +++
Sbjct: 302 EDVLDMSEENINLLKDQAQKIRVEEIMRDIRILQDAQEQSKWTKQSRIYLELSAIKMCKI 361
Query: 646 E 646
E
Sbjct: 362 E 362
>gi|300811148|ref|ZP_07091660.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300497852|gb|EFK32862.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 607
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 188/350 (53%), Gaps = 4/350 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++VGQ + +L +++ RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L++ +PC C C G D+ E+D+ N D + L+ P ++K++I
Sbjct: 65 LNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE VVF++ T EL K+P + +SR+Q+Y+F + + +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEAMV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E + ++ AL IA ++G +RDA +LDQ LS + A E+ G
Sbjct: 185 QRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL-IMDILAGKCLEDCSE 593
+ +++ LL L+ D+ + A+ ++ +++++ +L I +L K + E
Sbjct: 245 AQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTIQAMLFTKTGQ--GE 302
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F + ++ + S+ + ++ LR + Q L V L+Q S
Sbjct: 303 FLTDDFAQEIAQQSPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQAS 352
>gi|227894598|ref|ZP_04012403.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
ultunensis DSM 16047]
gi|227863589|gb|EEJ71010.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
ultunensis DSM 16047]
Length = 601
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 134/220 (60%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD ++GQ + +L +AI RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C G D+ E+D+ N D + + P ++K++I
Sbjct: 65 TNLQDGEPCNKCTNCIAADHGSMPDIMEIDAASNNGVDEIREIRDKVKYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I D+
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKDDLE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL 515
R++ I +E I ++ A+ IA ++G +RDA +LDQL
Sbjct: 185 KRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQL 224
>gi|410723222|ref|ZP_11362467.1| DNA polymerase III, subunit gamma/tau [Clostridium sp. Maddingley
MBC34-26]
gi|410603426|gb|EKQ57860.1| DNA polymerase III, subunit gamma/tau [Clostridium sp. Maddingley
MBC34-26]
Length = 542
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 198/359 (55%), Gaps = 9/359 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FD++VGQ + +L + I + YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPKSFDDIVGQEHITTTLKNEIINDRIAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L D +PC C C + G + DV E+D+ N D++ ++ PP +++KI+I
Sbjct: 65 LDLHDGEPCNECEMCRKINEGLAIDVTELDAASNNGIDKIRDIIDDTKYPPQEAKYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++VVF++ T + KLP + LSR Q++ F +I +I+
Sbjct: 125 MDEVHMLSVGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRIIQKEIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
+RL+RI + I+++Q +LD I+ +G++RDA +LDQ +G +I ++G+V
Sbjct: 185 NRLKRIVDSQNISYEQKSLDLISRICDGAMRDALSILDQAIAMGDNQIKYEDLVNILGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ-----LISQLANLIMDILAGKCLE 589
+++ L D+ D + + ++ +L+ S D MQ LI+ NL+M + E
Sbjct: 245 TNEYLFDITDAIIDRNVEKAMVITDKLVYSGKD-MQLFIKDLIAHFRNLLMVKVTNNPEE 303
Query: 590 DCSEARKNFF--GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ +N + + ++++ RA++IL E E + SK +L +A++++ E
Sbjct: 304 VLDMSLENIYLVKEQGRRIRVEEIMRAIRILQEAEINSKASKQSRLYLELAIIKMCKIE 362
>gi|257899194|ref|ZP_05678847.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|257837106|gb|EEV62180.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
Length = 581
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 190/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C+ C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECKMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ + L + + + +++ + + + + + D+L A +E+
Sbjct: 245 TDEMMDSYLSACVKKEVPEALEALNQILAAGKESRRFLEDMLQYCRDLLMYQQAPNLVEE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 305 QSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|431444909|ref|ZP_19513638.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1630]
gi|431760515|ref|ZP_19549113.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E3346]
gi|430586071|gb|ELB24337.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1630]
gi|430623859|gb|ELB60530.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E3346]
Length = 581
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|430839174|ref|ZP_19457116.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0688]
gi|430859616|ref|ZP_19477225.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1552]
gi|430491171|gb|ELA67653.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0688]
gi|430543153|gb|ELA83228.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1552]
Length = 581
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C +SG DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITSGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTVDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|194018066|ref|ZP_03056671.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061]
gi|194010258|gb|EDW19835.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061]
Length = 570
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 190/360 (52%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EKSPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTKDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+++I E++N + +L+ IA+ ++G +RDA LLDQ +S G+++T+ A + G V
Sbjct: 185 GRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S + L + + + + EL++ D +LI + D+L K D
Sbjct: 245 SQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDMLLYKTAPDLEGV 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ F + Q L +++L+++ ++++ + H + VA+++L S + +
Sbjct: 305 LEKVKVDENFVTLSDRVTPQFLYETIEVLNKSHQEMKWTNHPRIFFEVAVVKLCQSTAGI 364
>gi|293550625|ref|ZP_06673293.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039]
gi|291603246|gb|EFF33430.1| DNA polymerase III subunit gamma/tau [Enterococcus faecium E1039]
Length = 581
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 196/364 (53%), Gaps = 20/364 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C +SG DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITSGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWL---TVALLQ 641
+E+ S ++ F + +L +KILS+T+ ++R + +L TV L Q
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVTTVKLAQ 358
Query: 642 LSSS 645
L S+
Sbjct: 359 LPSA 362
>gi|406658675|ref|ZP_11066815.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus iniae
9117]
gi|405578890|gb|EKB53004.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus iniae
9117]
Length = 557
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 151/250 (60%), Gaps = 2/250 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ V+ +L A+ G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVAGEPCNHCDICKDITAGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE S++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPSENVVFILATTELHKIPATILSRVQRFEFKSIKQQAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L +I EEAI++++ AL IA ++ G +RDA +LDQ LSL ++TL++A E+ G
Sbjct: 184 EHLAKILSEEAISYEEDALFLIAKRAEGGMRDALSILDQALSLSADNQVTLAVAEEITGS 243
Query: 534 VSDDELLDLL 543
+S L D +
Sbjct: 244 ISIKALDDYV 253
>gi|210616982|ref|ZP_03291317.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787]
gi|210149505|gb|EEA80514.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787]
Length = 519
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 190/363 (52%), Gaps = 8/363 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ+ + ++L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKFRPGEFEDVKGQDHISKTLQNQIKADRIGHAYLFCGTRGTGKTSVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PCG+C C SSG S +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVNGSPCGVCDSCKAISSGTSMNVIEIDAASNNGVDNIREIREEVAYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRITIDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+RL + +E I ++ A+ ++A ++GS+RDA +LDQ LG+K+T E++G
Sbjct: 185 ARLADLMQKENIEVEEKAIRYVAKAADGSMRDALSILDQCIAFYLGQKLTYDNVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V + LL L + + + EL+ + QL + + ++L K +ED
Sbjct: 245 VDTEVFSRLLRELLERNVAKVMKSLDELVMQGRELSQLAADFTWYLRNLLLAKSSDNMED 304
Query: 591 CSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+ + EA M L R ++I SE QL+ + + + VA ++L E
Sbjct: 305 VLDVSTENLAQLKEEAQMIENDTLIRYIRIFSELSNQLKYATQKRVMMEVAFIKLCRPEM 364
Query: 648 SLD 650
++
Sbjct: 365 EVE 367
>gi|172037444|ref|YP_001803945.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. ATCC
51142]
gi|354553674|ref|ZP_08972980.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. ATCC
51472]
gi|171698898|gb|ACB51879.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. ATCC
51142]
gi|353554391|gb|EHC23781.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. ATCC
51472]
Length = 683
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 192/355 (54%), Gaps = 10/355 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +AI+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+++ PCG C C + G + DV E+D+ D + +++ + P R+K++
Sbjct: 67 AVKVPTASPCGQCEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 126
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE + V+FV+ T + ++ + +SR Q++ + +I +
Sbjct: 127 VIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPLEAM 186
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E I + AL +A +NG +RDAE LLDQLSLL IT ++L+G V
Sbjct: 187 VEHLTIIAQKENIEIEAEALTLVAQIANGGLRDAESLLDQLSLLSGGITPEKVWDLVGAV 246
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKCL---ED 590
+ +LL LL A++S+ VI + R+LM +P+ ++ LA +++L K D
Sbjct: 247 PERDLLSLLK-AINSNNPELVIESCRKLMDRGREPLVVLQNLAAFYLNLLIAKTAPTRSD 305
Query: 591 CSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ +EA+ + + R + L E+E QL+ + WL V LL L
Sbjct: 306 LVAVTSTTWDDLCTEAEQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGL 360
>gi|320546449|ref|ZP_08040764.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus
ATCC 9812]
gi|320448834|gb|EFW89562.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus equinus
ATCC 9812]
Length = 559
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 178/319 (55%), Gaps = 11/319 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ V+ +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + +VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTANVVFILATTELHKIPATILSRVQRFEFKAIKPAAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKK-ITLSLAYELIGI 533
L I +E I++D+ AL IA ++ G +RDA +LDQ LSL ++L++A E+ G
Sbjct: 184 EHLGHILDKEGISYDKDALTLIARRAEGGMRDALSILDQALSLTTDNHVSLAIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S L D + L+ +TS +A E + + D + +S+ A +++ L D
Sbjct: 244 ISMAALDDFVANVLAQETS----KALENLETIFDSGKSMSRFATDLLN-----YLRDLLV 294
Query: 594 ARKNFFGKHTSEADMQKLS 612
+ HTS+A + LS
Sbjct: 295 VQSGGENTHTSQAFQENLS 313
>gi|160933397|ref|ZP_02080785.1| hypothetical protein CLOLEP_02242 [Clostridium leptum DSM 753]
gi|156867274|gb|EDO60646.1| DNA polymerase III, subunit gamma and tau [Clostridium leptum DSM
753]
Length = 564
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 191/356 (53%), Gaps = 6/356 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L +K+RP F ++VGQ V +L + + G + YLF G RGTGKT+ ++I A A+NCL
Sbjct: 8 LYRKWRPQVFSDVVGQPQVTVTLQNELKAGRIAHAYLFTGSRGTGKTTCAKILAKAVNCL 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
SL++ PCG C C +G DV E+D+ N + + +L + A P +++++++II
Sbjct: 68 SLKEGDPCGECESCVGIDNGSVMDVVEIDAASNNGVENIRNLREEASFTPAAAKYRVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HVVF++ T E+ KLP + LSR Q++ F +I IA
Sbjct: 128 DEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSRCQRFDFHRIDPEVIAD 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
RL+ + EE + ++ A IA ++G +RDA LLDQ +ITL + E G+
Sbjct: 188 RLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQCMGRSSEITLEVVSETAGLAGR 247
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE--- 593
D L L D L + + + EL ++ D ++L +LA +++ K +++
Sbjct: 248 DHLFSLADTVLRQNGGQALEQIDELHKASKDMVRLCEELAGHFRNLMLLKTMKNPQNLIV 307
Query: 594 ARKNFFGKHTSEADMQKLS---RALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
++ + K +A+ L+ A+ +L ++++ + L +ALL+L S E
Sbjct: 308 VSQDEYQKLQVQAEAFTLAGTIHAIDVLQAAKERMFRGFDRRVELEMALLKLCSPE 363
>gi|328956610|ref|YP_004373996.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4]
gi|328672934|gb|AEB28980.1| DNA polymerase III subunits gamma and tau [Carnobacterium sp. 17-4]
Length = 605
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 195/361 (54%), Gaps = 20/361 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++ GQ + ++L +A+++ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFQDIAGQKAITQTLRNALAQEKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C + G+ DV E+D+ N + + + A P S+ +K++I
Sbjct: 65 PNLKDGEPCNECEMCQSITQGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPKNVIFILATTEPHKIPLTIISRTQRFDFKRISVRDSC 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E I + + AL IA + G +RDA +LDQ +S +T+ A + G +
Sbjct: 185 ERMAYILGQEKIEYQEEALTVIARAAEGGMRDALSILDQAISYGDDSVTVENAMSVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ------------LISQLANLIMDI 582
+ + +LD D + +T + + ++ D + L+ Q A + D+
Sbjct: 245 TQELVLDYFDSIIQHNTEKGLSLLQSILAEGKDASRFVEDLILFSRDLLVYQQAPQMTDL 304
Query: 583 LAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
L G +++ F + Q+L + +++L++T++++R + H +L VA ++L
Sbjct: 305 LEGANVDEG-------FKSLSQTITAQQLYKVIELLNDTQQEIRFTNHAEVYLEVATVKL 357
Query: 643 S 643
+
Sbjct: 358 T 358
>gi|253730826|ref|ZP_04864991.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253735210|ref|ZP_04869375.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus TCH130]
gi|418931573|ref|ZP_13485413.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418990366|ref|ZP_13538029.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1096]
gi|424774848|ref|ZP_18201850.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CM05]
gi|253725438|gb|EES94167.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253726874|gb|EES95603.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus TCH130]
gi|377714163|gb|EHT38366.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377724366|gb|EHT48483.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1096]
gi|402347085|gb|EJU82150.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CM05]
Length = 557
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 180/344 (52%), Gaps = 7/344 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NCL+ D
Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E+D+ N D + ++ P S++K++IIDE
Sbjct: 62 GEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVH 121
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H +F++ T E K+P + +SR+Q++ F I I RL+
Sbjct: 122 MLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKF 181
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVSDDEL 539
+ + I + AL FIA S G +RDA ++DQ G +TL A + G V D+ L
Sbjct: 182 VADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSVHDEAL 241
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
L D + D + + + + + +LI+ + + D + K E +E R
Sbjct: 242 DHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEYR---- 297
Query: 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E DM L + + ++++T +R S +Q V L++L+
Sbjct: 298 ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 339
>gi|403382524|ref|ZP_10924581.1| DNA polymerase III subunits gamma and tau [Paenibacillus sp. JC66]
Length = 579
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 180/359 (50%), Gaps = 6/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F +++GQ ++++L +++ G T YLF GPRGTGKT+A+++ A A+NC
Sbjct: 2 ALYRKWRPQQFQDVIGQQHIIQTLQNSLKEGRFTHAYLFSGPRGTGKTTAAKLLAKAVNC 61
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C + G DV E+D+ D + L P R K++I
Sbjct: 62 EHGPAVEPCNECEACLRITQGAVMDVVEIDAASNRGVDEIRELRDKVKFAPTEVRHKVYI 121
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HV+F++ T E K+P + +SR Q++ F ++ +
Sbjct: 122 IDEVHMLTTEAFNALLKTLEEPPVHVMFILATTEPHKIPATIISRCQRFDFRRVSLEEQV 181
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIV 534
SRL RIC EE I + AL +IA S G +RDA LL+Q+ S G +T A + G +
Sbjct: 182 SRLERICNEEHIEAEAGALQYIARLSQGGMRDALSLLEQISSFAGGTVTYEHAVAMTGGI 241
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+DD+ L L + + + M + P + + L + D+L + ++D +
Sbjct: 242 ADDQFEKLAQCILQRNIPLAMQVVEDFMDAGKSPDKCVESLMHYFRDLLIIQMVKDSAAV 301
Query: 595 RKNFFGKHTSEADMQKLSR-----ALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ SR +++L+ +++ S H +A+++L SS S
Sbjct: 302 TDRILQPERFRPMAESFSRNELFQIIEVLNRYHGEMKYSSHPAILFEIAVMKLCSSNES 360
>gi|428277432|ref|YP_005559167.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
natto BEST195]
gi|291482389|dbj|BAI83464.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
natto BEST195]
Length = 563
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 197/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +LD IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F K + + Q L + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRKLSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ DL + + ++
Sbjct: 365 AADLPEVDMLMK 376
>gi|416842944|ref|ZP_11905245.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
O11]
gi|323438495|gb|EGA96246.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
O11]
Length = 557
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 180/344 (52%), Gaps = 7/344 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NCL+ D
Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E+D+ N D + ++ P S++K++IIDE
Sbjct: 62 GEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVH 121
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H +F++ T E K+P + +SR+Q++ F I I RL+
Sbjct: 122 MLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKF 181
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVSDDEL 539
+ + I + AL FIA S G +RDA ++DQ G +TL A + G V D+ L
Sbjct: 182 VADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSVHDEAL 241
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
L D + D + + + + + +LI+ + + D + K E +E R
Sbjct: 242 DHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEYR---- 297
Query: 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E DM L + + ++++T +R S +Q V L++L+
Sbjct: 298 ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 339
>gi|313124288|ref|YP_004034547.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280851|gb|ADQ61570.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 607
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 187/355 (52%), Gaps = 14/355 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++VGQ + +L +++ RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L++ +PC C C G D+ E+D+ N D + L+ P ++K++I
Sbjct: 65 LNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE VVF++ T EL K+P + +SR+Q+Y+F + + +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEAMV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E + ++ AL IA ++G +RDA +LDQ LS + A E+ G
Sbjct: 185 QRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL------AGKCL 588
+ +++ LL L+ D+ + A+ ++ +++++ +L + + G+ L
Sbjct: 245 AQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGEFL 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
D F + ++ + S+ + ++ LR + Q L V L+Q S
Sbjct: 305 TDD-------FAQEIAQQSPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQAS 352
>gi|269202097|ref|YP_003281366.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus ED98]
gi|262074387|gb|ACY10360.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus ED98]
Length = 565
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKMFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|408422921|emb|CCJ10332.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus ST228]
gi|408424909|emb|CCJ12296.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus ST228]
gi|408426898|emb|CCJ14261.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus ST228]
gi|408428886|emb|CCJ26051.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus ST228]
gi|408430874|emb|CCJ18189.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus ST228]
gi|408432868|emb|CCJ20153.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus ST228]
gi|408434857|emb|CCJ22117.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus ST228]
gi|408436842|emb|CCJ24085.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus ST228]
Length = 557
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 180/344 (52%), Gaps = 7/344 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NCL+ D
Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E+D+ N D + ++ P S++K++IIDE
Sbjct: 62 GEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVH 121
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H +F++ T E K+P + +SR+Q++ F I I RL+
Sbjct: 122 MLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKF 181
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVSDDEL 539
+ + I + AL FIA S G +RDA ++DQ G +TL A + G V D+ L
Sbjct: 182 VADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSVHDEAL 241
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
L D + D + + + + + +LI+ + + D + K E +E R
Sbjct: 242 DHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEYR---- 297
Query: 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E DM L + + ++++T +R S +Q V L++L+
Sbjct: 298 ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 339
>gi|336437526|ref|ZP_08617231.1| hypothetical protein HMPREF0988_02816 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336005141|gb|EGN35190.1| hypothetical protein HMPREF0988_02816 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 531
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 188/355 (52%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ+ ++ +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPTSFEDVKGQDHIITTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C ++G S +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVDGSPCGECAMCRSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRITIDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+R+ + E ++ ++ A+ +IA ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 ARMNELMEAEQVDVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGQKLTYDNVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V D LL + D + + EL+ + QL + + ++L K +ED
Sbjct: 245 VDTDVFSRLLRKIIQRDVAAVLNTVEELVMQGRELSQLAADFTWYLRNLLLVKTSDSIED 304
Query: 591 CSEARKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + EA M + L R ++I SE Q++ + + L VAL++L
Sbjct: 305 VLDVSTENLQQLKEEAQMIETDMLLRYIRIFSELSGQMKYATQKRVLLEVALIKL 359
>gi|374385348|ref|ZP_09642855.1| DNA polymerase III, subunit gamma and tau [Odoribacter laneus YIT
12061]
gi|373225839|gb|EHP48167.1| DNA polymerase III, subunit gamma and tau [Odoribacter laneus YIT
12061]
Length = 369
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 184/353 (52%), Gaps = 9/353 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ + +L +AI + YLF GPRG GKT+ +RIFA +NC +
Sbjct: 8 ARKYRPASFDTVVGQLSITSTLRNAIVNHQLAQAYLFCGPRGVGKTTCARIFAKTINCQN 67
Query: 358 LE-DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L+ + +PC C C F++GRS ++ E+D+ N D + L+ + P ++ ++II
Sbjct: 68 LQPNAEPCNECESCKAFNTGRSLNIHELDAASNNSVDDIRGLVDQVRILPQVGKYSVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE H +F++ T E K+ + LSR Q Y F ++K D
Sbjct: 128 DEVHMLSTSAFNAFLKTLEEPPAHAIFILATTEKHKILPTILSRCQIYDFNRMKVEDTVR 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ I +E + ++ ALD IA K++G++RDA + DQ ++ GK +T + E + ++
Sbjct: 188 HLQYIAQKEGVTAEEEALDIIAQKADGAMRDALSIFDQVVNFCGKNLTYAGVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L DL D S ++ E+M D L++ L ++L K LE
Sbjct: 248 YEYYFRLTDLFHKGDVSGALLLFNEIMEKGFDAANLVAGLGKHFRNVLVAKDPATVQLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ R+ + K + + L ALKI+ + E Q ++ + + + L++L
Sbjct: 308 VSARIRERYL-KQAAVCETGFLYDALKIIEQCEMQYKVRMEKRLCVEITLIKL 359
>gi|390629572|ref|ZP_10257566.1| DNA-directed DNA polymerase [Weissella confusa LBAE C39-2]
gi|390485208|emb|CCF29914.1| DNA-directed DNA polymerase [Weissella confusa LBAE C39-2]
Length = 603
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 187/350 (53%), Gaps = 2/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ VV ++L +AI G T YLF+GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRTWRPQKFSDMIGQEVVTKTLKNAIMTGQTTHAYLFNGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ + +P G+C C +G D+ E+D+ N D + + + P +++K++I
Sbjct: 65 LNPINGEPDGVCAMCQAADNGTLGDIIELDAASNNGVDEIREIREDVNYAPTQAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPATIISRTQRFDFKRIDAKAAY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I + +D+AA+ IA ++G +RDA +LDQ LS +TL A + G V
Sbjct: 185 DRMTYILDQRGDTYDEAAIRVIANAADGGMRDALSILDQALSFGDGHVTLENALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
+ L + + + DT + + E++ + D + + L + D+L + E S
Sbjct: 245 TQTLLGEYVQAVVKQDTKQALAKLSEVLSAGKDANRFVEDLISYARDLLLHTEAPELISI 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
F + R + IL++T++QLR + + +L V ++LS
Sbjct: 305 VPDETFTDLAANTQANVWYRMIDILNDTQQQLRFTNRPSIYLEVLTVKLS 354
>gi|418282338|ref|ZP_12895116.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21202]
gi|365170716|gb|EHM61675.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21202]
Length = 565
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 183/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIVCEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALNHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|343520684|ref|ZP_08757653.1| DNA polymerase III, subunit gamma and tau [Parvimonas sp. oral
taxon 393 str. F0440]
gi|343397642|gb|EGV10176.1| DNA polymerase III, subunit gamma and tau [Parvimonas sp. oral
taxon 393 str. F0440]
Length = 544
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 192/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ ++FRP F +VGQ +V L + I G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 4 AIYREFRPKDFTRVVGQEHIVEILKNQIRTGNLGHAYLFSGIRGTGKTSCAKIFARAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D PC C C + ++ +V E+D+ R D + L + PP ++K++I
Sbjct: 64 LNPIDGNPCNECENCKMILEDKALEVVEMDAASNRRIDDIRELKEKVIYPPQIVKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L LE +H++F++ T E+DKLP + +SR Q++ F +I + DI
Sbjct: 124 IDEAHMITNEGFNALLKILEEPPKHLIFILATTEIDKLPDTIISRCQRFEFKRINNSDIV 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
+ + + ++ ++ I+ S+G++RDA LLDQ+ GK KIT+ E +G+V
Sbjct: 184 KNINYVLNNLNVEVEEDGINLISELSSGAMRDALSLLDQVVATGKEKITIEDINECLGLV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDP----MQLISQLANLIMDILAGKCLED 590
+ + L +L L+S + T+ R L+ + P + LI N+I+ K L
Sbjct: 244 NLNMLFELSKSILNSSKNETIETFRNLVENGKTPHNIIIDLIKHFRNIILVKSVKKELTT 303
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
++ + +H+++ ++ +L L+ L + E +++ S Q + ++++ S
Sbjct: 304 LNDVEYKRYLEHSNKFEIAELIYILENLLDVEDKMKKSDMQNALAELLIIKICS 357
>gi|332637117|ref|ZP_08415980.1| DNA polymerase III subunits gamma and tau [Weissella cibaria KACC
11862]
Length = 610
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/350 (30%), Positives = 188/350 (53%), Gaps = 2/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ VV ++L +AI G T YLF+GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRTWRPQKFSDMIGQEVVTKTLKNAIMTGQTTHAYLFNGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ + +P G+C C +G DV E+D+ N D + + + P +++K++I
Sbjct: 65 LNPINGEPDGVCAMCQAADNGTLGDVIELDAASNNGVDEIREIREDVNYAPTQAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPATIISRTQRFDFKRIDAKAAY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I + +D+AA+ IA ++G +RDA +LDQ LS +TL A + G V
Sbjct: 185 DRMTYILDQRGDTYDEAAIRVIANAADGGMRDALSILDQALSFGDGHVTLENALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
+ L + + + DT + + E++ + D + + L + D+L + E S
Sbjct: 245 TQTLLGEYVQAVVQQDTKAALAKLSEVLSAGKDASRFVEDLISYARDLLLHTEAPELISI 304
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F S+ R + L++T++QLR + + +L V ++LS
Sbjct: 305 VPDDIFKALASDTPATVWYRMIDTLNDTQQQLRYTNRPSIYLEVLTVKLS 354
>gi|87161398|ref|YP_493164.1| DNA polymerase III subunit gamma and tau [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88194233|ref|YP_499025.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|161508723|ref|YP_001574382.1| DNA-directed DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|422744611|ref|ZP_16798568.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422747283|ref|ZP_16801200.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus MRSA131]
gi|87127372|gb|ABD21886.1| DNA polymerase III, gamma and tau subunits [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87201791|gb|ABD29601.1| DNA polymerase III, gamma and tau subunits, putative
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|160367532|gb|ABX28503.1| DNA-directed DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|320139233|gb|EFW31112.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320142047|gb|EFW33872.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus MRSA177]
Length = 557
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 180/344 (52%), Gaps = 7/344 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NCL+ D
Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E+D+ N D + ++ P S++K++IIDE
Sbjct: 62 GEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVH 121
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H +F++ T E K+P + +SR+Q++ F I I RL+
Sbjct: 122 MLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKF 181
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVSDDEL 539
+ + I + AL FIA S G +RDA ++DQ G +TL A + G V D+ L
Sbjct: 182 VADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSVHDEAL 241
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
L D + D + + + + + +LI+ + + D + K E +E R
Sbjct: 242 DHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEYR---- 297
Query: 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E DM L + + ++++T +R S +Q V L++L+
Sbjct: 298 ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 339
>gi|416849257|ref|ZP_11908059.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
O46]
gi|323441335|gb|EGA98998.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
O46]
Length = 557
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 180/344 (52%), Gaps = 7/344 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NCL+ D
Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E+D+ N D + ++ P S++K++IIDE
Sbjct: 62 GEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVH 121
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H +F++ T E K+P + +SR+Q++ F I I RL+
Sbjct: 122 MLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKF 181
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVSDDEL 539
+ + I + AL FIA S G +RDA ++DQ G +TL A + G V D+ L
Sbjct: 182 VADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSVHDEAL 241
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
L D + D + + + + + +LI+ + + D + K E +E R
Sbjct: 242 DHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEYR---- 297
Query: 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E DM L + + ++++T +R S +Q V L++L+
Sbjct: 298 ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 339
>gi|421767313|ref|ZP_16204068.1| DNA polymerase III subunits gamma and tau [Lactococcus garvieae
DCC43]
gi|407624233|gb|EKF51014.1| DNA polymerase III subunits gamma and tau [Lactococcus garvieae
DCC43]
Length = 552
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 154/266 (57%), Gaps = 2/266 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L +AI G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRKYRSQRFDEMVGQEVVATTLKNAIVNGQISHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + + +K++I
Sbjct: 65 PNQKDGEPCNNCDICQAITQGSLEDVIELDAASNNGVDEIREIRDKSTYAASRATYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + +VVFV+ T EL K+P + +SR Q++ F I GDI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPTDNVVFVLATTELQKIPATIISRVQRFAFKAITTGDIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L + +E I+F++ ALD IA + G +RDA LLDQ LS K+ A + G +
Sbjct: 185 QHLAEVLADEKISFEEKALDVIAKSAEGGMRDALSLLDQALSFSDGKLEEKDALLVTGSI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARE 560
+++ L+ + AL++ T + A E
Sbjct: 245 ANEALVSYVS-ALAASDGTTALNALE 269
>gi|422344456|ref|ZP_16425382.1| hypothetical protein HMPREF9432_01442 [Selenomonas noxia F0398]
gi|355377367|gb|EHG24592.1| hypothetical protein HMPREF9432_01442 [Selenomonas noxia F0398]
Length = 611
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 186/354 (52%), Gaps = 8/354 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ + R+L A++ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRRWRPESFADLVGQEHISRTLSRAVASGQTSHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PCG+C C S G S DV E+D+ D + L +S P + +KI+I
Sbjct: 65 AEGPTLTPCGVCESCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTAGHYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + V+F++ T E K+P + SR Q+Y F +I +I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPERVLFILATTEPHKVPATIQSRCQRYDFHRITVTEIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL +C E I ++ AL IA +++G +RDA +LDQ + L + +T E +G+V
Sbjct: 185 DRLLYVCRESGIAAEEDALGLIALQADGGMRDALSILDQCTALAEGPLTTERVQEALGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL---IMDILAGKCL--- 588
+ + + D + + + EL+++ + Q++ +LA +M + G +
Sbjct: 245 GHAWIEKMAMQIAACDAAGLIAQLGELLQNGSELKQILGELAQYFRSLMIVGVGGTVSAA 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
E C+E +++ + +K+ L+ L+ET ++LR S + + L
Sbjct: 305 EFCAE-QEDVLREEAKRFTQEKIMTILRTLNETMQELRFSPQPRIAVETMFIAL 357
>gi|153941061|ref|YP_001389393.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum F
str. Langeland]
gi|384460484|ref|YP_005673079.1| DNA polymerase III subunits gamma/tau [Clostridium botulinum F str.
230613]
gi|152936957|gb|ABS42455.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F
str. Langeland]
gi|295317501|gb|ADF97878.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F
str. 230613]
Length = 541
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ + +L + + + YLF G RGTGKTS ++I + A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C +SG DV E+D+ + + + ++++ PP + K++I
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKNKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR Q++ F +I++ +I
Sbjct: 125 MDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR I E+ I D +L+ IA S+G++RDA +LDQ+ G K+ +++G+V
Sbjct: 185 ERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+++ LL + D + D ++ +++ S D I + + +IL K +
Sbjct: 245 TNENLLRITDSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNEI 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + + + ++++ R +KIL E E+Q + K +L +A+L++ E
Sbjct: 305 LDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKMCKIE 362
>gi|430826860|ref|ZP_19445029.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0164]
gi|430444609|gb|ELA54444.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0164]
Length = 581
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ + L + + + +++ + + + + + D+L A +E+
Sbjct: 245 TDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLTYQQAPNLVEE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 305 QSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|297616247|ref|YP_003701406.1| DNA polymerase III subunits gamma and tau [Syntrophothermus
lipocalidus DSM 12680]
gi|297144084|gb|ADI00841.1| DNA polymerase III, subunits gamma and tau [Syntrophothermus
lipocalidus DSM 12680]
Length = 517
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 185/364 (50%), Gaps = 8/364 (2%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L + RP FDE+VGQ VR+L +A+ +G V+ YLF GPRGTGKTS ++I A A+N
Sbjct: 18 LALYRSLRPQRFDEVVGQEQTVRALRNAVQQGRVSHAYLFCGPRGTGKTSVAKILAKAVN 77
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C+ D +PC C C +SG DV E+D+ D + L + + P + K++
Sbjct: 78 CVEPVDGEPCNRCASCVDIASGSFMDVIEIDAASNRGIDEIRDLREKVRMMPAQGKTKVY 137
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L E + +L +LE + VVFV+ T E ++P + LSR Q+Y+F ++ +I
Sbjct: 138 IIDEVHMLTTEAFNALLKTLEEPPESVVFVLATTEPQRIPATILSRCQRYNFRRLSQTEI 197
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGI 533
RL+ + + I ++ AL+ IA ++ GS+RD +LDQ G IT ++G+
Sbjct: 198 LERLKTVAQTQGIESEEKALEVIARRATGSMRDGLSILDQCLAYGLSSITYQDVLNVLGL 257
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
V D L + + D + + + + + +Q + ++A+ + D+L K + +E
Sbjct: 258 VDDRFLSEFFGSIMEGDAGLVLTYIDQAVAAGKEALQFVREVADYLRDMLVLKAVGPGAE 317
Query: 594 ARKNF-------FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ G+ D + LK + + +LR S+ + V L+L+
Sbjct: 318 LSRVVGDETLLELGRQAESLDTGLILEVLKRVMQLAGELRFSESPRFIMEVTFLELAGLL 377
Query: 647 SSLD 650
S D
Sbjct: 378 GSRD 381
>gi|163846115|ref|YP_001634159.1| DNA polymerase III subunits gamma and tau [Chloroflexus aurantiacus
J-10-fl]
gi|163667404|gb|ABY33770.1| DNA polymerase III, subunits gamma and tau [Chloroflexus
aurantiacus J-10-fl]
Length = 609
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 183/353 (51%), Gaps = 7/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+R F ELVGQ VV++L +AI+ V YLF GPRG GKT+ +R+ A A+NC
Sbjct: 16 SLYRKWRSQTFAELVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAKAVNC 75
Query: 356 LSLED-QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
L+ + +PCG+C CA + GR+ DV E+D+ + +++ P +R K++
Sbjct: 76 LNPDPTARPCGVCEMCAAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAEARMKVY 135
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE H +F++ T E+ K+P + LSR Q++ F + +
Sbjct: 136 IIDETHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRHSVSAM 195
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGI 533
A+ LRRI E I + IA + GS+RDA +L+QL S + ITL L+G+
Sbjct: 196 AAHLRRIAAAEGIVLADGVPEAIARAATGSMRDALGILEQLASFVEGPITLPQVQSLLGM 255
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQL-----ANLIMDILAGKCL 588
+ E+ L+ ++ D + + + D Q L A +++ + L
Sbjct: 256 TAAAEVDALITALVNHDLTAALRAVHGVANQGADVRQFTRDLVERLRAVMVLKATGDRTL 315
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
D S+ G+ +ADM L +K+ S + QLR + + L VA+++
Sbjct: 316 LDLSDDEVALLGQWVQQADMAALVHWVKLFSNLDAQLRTTPYGQLPLEVAVVE 368
>gi|424836504|ref|ZP_18261151.1| DNA polymerase III subunits gamma and tau [Clostridium sporogenes
PA 3679]
gi|365977030|gb|EHN13134.1| DNA polymerase III subunits gamma and tau [Clostridium sporogenes
PA 3679]
Length = 541
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ + +L + + + YLF G RGTGKTS ++I + A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L+D +PC C C +SG DV E+D+ + + + ++++ PP + K++I
Sbjct: 65 LNLKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKNKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR Q++ F +I++ +I
Sbjct: 125 MDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR I E+ I D +L+ IA S+G++RDA +LDQ+ G K+ +++G+V
Sbjct: 185 ERLRSIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+++ LL + + + D ++ +++ S D I + + +IL K +
Sbjct: 245 TNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNEI 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + + ++++ R +KIL E E+Q + K +L +A+L++ E
Sbjct: 305 LDMSSENIDLVKEQAEKIRIEEIMRNIKILQEAEQQSKWVKQSRIYLELAVLKMCKIE 362
>gi|218283247|ref|ZP_03489308.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989]
gi|218216002|gb|EEC89540.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989]
Length = 587
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP+ FDE+VGQ ++++L +AI + + YLF GPRGTGKTS ++IFA LNC
Sbjct: 5 ALYRKYRPSNFDEVVGQTHIIQTLKNAIIQNRIAHAYLFCGPRGTGKTSIAKIFAKTLNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D PCG+C C + ++G D+ E+D+ N D V +L+ P ++KI+I
Sbjct: 65 TNSQDA-PCGVCENCKMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYAPMQGKYKIYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ + +L ++E HV+F+ T E +K+ + +SR Q++ F K+ DI
Sbjct: 124 IDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQRFDFNKVSVNDIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL +C E I DQ L IA ++G +RDA +LDQ ++ I ++ ++ G++
Sbjct: 184 YRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQCVAYCTSHIDVNDIRKIYGVI 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED---C 591
+ +++ L D + ++ +D +L + +++ D L E+
Sbjct: 244 TSEDIGQLFSSIYKKDVDRFIKDIQKYSDMGMDIKRLTADFIHMLKDSLILDYSENSTLV 303
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
S+ K+ K+ A + + ++ L +T + + + +L +LL++SS
Sbjct: 304 SDMNKDMIRKYFKSAPIHFRIQCMEELMDTYNKYTYASNALDYLEASLLKISS 356
>gi|306490882|gb|ADM95000.1| DNA polymerase III gamma/tau subunits [uncultured candidate
division JS1 bacterium]
Length = 568
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 248/507 (48%), Gaps = 36/507 (7%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
S+ +K+RP F+++VGQ + ++L +AI ++ YLF GPRG GKT+ +RI A ALNC
Sbjct: 6 SIYRKWRPQLFEDIVGQKHITQTLKNAIKLNRISHAYLFSGPRGVGKTTTARILAKALNC 65
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PC C +C + G+S DV E+D D + L P ++KI+I
Sbjct: 66 QKGPTEYPCNQCAQCIRINQGQSMDVLEIDGASNRGIDEIRELRSKIGFAPAEGKYKIYI 125
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE V+F+ T K+P++ LSR Q ++F ++ ++
Sbjct: 126 IDEVHMLTNEAFNALLKTLEEPPSQVLFIFATTAPQKVPKTILSRCQCFYFRRLSLEEMV 185
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+L +I EE +N D +L IA + GS+RDAE +LDQ ++ K++T + E++G++
Sbjct: 186 EKLTKIATEEKLNIDLPSLRLIAESATGSMRDAESILDQVITYSEKQVTPEVVREILGLI 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE-DCSE 593
+ LL ++ DT + +L++ +D + + L + + K L+ D S+
Sbjct: 246 PQEIFWRLLKAIIARDTKMGLEIINQLVKEGVDFHKFVQDLIVYVHQVSLLKILDKDNSD 305
Query: 594 ARKNFFGKHTSEAD-MQKLSRA------LKILSE---TEKQLRMSKHQTTWLTVALLQLS 643
A F + E++ + +LS + L I+ E E+++R + L + +++L+
Sbjct: 306 A---IFSRSGEESEKLSELSNSTNIETILNIIEELKLVEEKIRYYYYPWVLLELMVVKLT 362
Query: 644 SSE--SSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKL--GALED 699
SE S ++SK+ + D +H S + G + NK+ E
Sbjct: 363 QSEEQSYQKESESKIVNEFISDIQKKNHV----EQSTGKIKEGHLSKNSKNKVLSSNKEP 418
Query: 700 YKGTLESIW-KTATELCQSN-SLKTFLRKQGKLSSLHV-NHGLAVAELE---FHHRDYVS 753
K E +W K + Q SL TFL +++H+ + L V L FH
Sbjct: 419 KKVQFEQLWSKVLARVKQERISLYTFLMAS---NTVHIEDDQLIVGFLPNYLFHKESLEK 475
Query: 754 RAEKSWKLIASTLQSVLGCNVEIRLLC 780
R + +++ + L+ C EI+L C
Sbjct: 476 RVNR--EIVEAILKEEANC--EIKLKC 498
>gi|325663669|ref|ZP_08152073.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470162|gb|EGC73395.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 521
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 189/355 (53%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ+ +V++L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKFRPGGFEDVKGQDHIVQTLKNQIKAERIGHAYLFCGTRGTGKTSVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C + G S +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVDGSPCGQCAMCQKIAEGTSMNVIEIDAASNNGVDNIREIREEVAYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFKRITIDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+R+ ++ E + ++ A+ +IA ++GS+RDA LLDQ LG+K+ E++G
Sbjct: 185 ARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGQKLKYDDVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V D +L ++ D + + EL+ + QL++ + ++L K +ED
Sbjct: 245 VDTDIFSRMLRQVMARDVAGVLQTVEELVMQGRELTQLVADFTWYLRNLLLVKSSDNMED 304
Query: 591 CSEARKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + EA M + L R ++I S+ Q++ + + L V L++L
Sbjct: 305 VLDVSTENLIQLKEEAKMIESDMLFRYIRIFSDLSNQIKYATQKRVLLEVTLIKL 359
>gi|282915794|ref|ZP_06323563.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus D139]
gi|282320332|gb|EFB50673.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus subsp.
aureus D139]
Length = 565
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 182/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 FNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|163789946|ref|ZP_02184382.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium
sp. AT7]
gi|159874886|gb|EDP68954.1| DNA-directed DNA polymerase III, gamma/tau subunit [Carnobacterium
sp. AT7]
Length = 606
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 200/384 (52%), Gaps = 26/384 (6%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++ GQ + ++L +A+++ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFQDIAGQKAITQTLRNALAQEKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C + G+ DV E+D+ N + + + A P S+ +K++I
Sbjct: 65 PNLKDGEPCNECETCHSITQGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTSADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++VVF++ T E K+P + +SR+Q++ F +I D
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPKNVVFILATTEPHKIPLTIISRTQRFDFKRISVRDSC 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E I + + AL IA + G +RDA +LDQ +S +T A + G +
Sbjct: 185 ERMAYILNQEKITYQEEALTVIARAAEGGMRDALSILDQAISYGDDSVTAENAMSVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ------------LISQLANLIMDI 582
+ + +LD D + T + + ++ D + L+ Q A + D+
Sbjct: 245 TQELVLDYFDAIIQHKTEKGLSLLQSILAEGKDASRFVEDLILFSRDLLVYQQAPQMTDL 304
Query: 583 LAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
L G +++ F + Q+L + IL++T++++R + H +L VA ++L
Sbjct: 305 LEGANVDEG-------FKTLSQTITAQQLYEVIGILNDTQQEMRFTNHAEVYLEVATVKL 357
Query: 643 SSSESSLDLNDSKLCLRYAHDKDG 666
+ L +K+ R A ++ G
Sbjct: 358 TQ------LTVAKVADRLAVEESG 375
>gi|410669194|ref|YP_006921565.1| DNA polymerase III subunit gamma/tau [Thermacetogenium phaeum DSM
12270]
gi|409106941|gb|AFV13066.1| DNA polymerase III subunit gamma/tau [Thermacetogenium phaeum DSM
12270]
Length = 626
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 178/348 (51%), Gaps = 16/348 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +++GQ V R+L +A+ G + YLF GPRGTGKTS +RI A ALNC
Sbjct: 5 ALYREWRPQLFRDVIGQEHVSRTLKNAVVLGRIAHAYLFCGPRGTGKTSTARILARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L++ +PC C C S+G S +V E+D+ + + L + + P R+K++I
Sbjct: 65 TDLQNGEPCNRCPSCRSISAGISLNVIEMDAASHRGIEEIRELRQKVGMAPGGGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L GE + +L +LE H VF++ T E K+P + LSR Q++ F ++ I
Sbjct: 125 IDEVHMLTGEAFNALLKTLEEPPAHAVFILATTEAQKVPLTILSRCQRFDFRRLDRSLIK 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L RI E+ + AALD I+ ++ G++RDA LLDQ S G +I L L G
Sbjct: 185 GHLARIAREKGWEAEDAALDLISRQAGGALRDALGLLDQAASFAGGRIRLEDVEMLTGAP 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L L+ D + + L +P + + QLA+ + D+L
Sbjct: 245 RQEVLDGLIAAVAGGDVPALMEQLDGLFARGYEPRRALLQLADRLRDLL----------- 293
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
F + D + R L+ ++ E ++R S L +ALL++
Sbjct: 294 ----FEEGVGAPDKRLYVRFLREIAGAEVEMRGSARPDLILELALLRV 337
>gi|331087183|ref|ZP_08336253.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408869|gb|EGG88330.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 521
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 189/355 (53%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ+ +V++L + I + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKFRPGGFEDVKGQDHIVQTLKNQIKAERIGHAYLFCGTRGTGKTSVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C + G S +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVDGSPCGQCAMCQKIAEGTSMNVIEIDAASNNGVDNIREIREEVAYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFKRITIDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+R+ ++ E + ++ A+ +IA ++GS+RDA LLDQ LG+K+ E++G
Sbjct: 185 ARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGQKLKYDDVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V D +L ++ D + + EL+ + QL++ + ++L K +ED
Sbjct: 245 VDTDIFSRMLRQVMARDVAGVLQTVEELVMQGRELTQLVADFTWYLRNLLLVKSSDNMED 304
Query: 591 CSEARKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + EA M + L R ++I S+ Q++ + + L V L++L
Sbjct: 305 VLDVSTENLIQLKEEAKMIESDMLFRYIRIFSDLSNQIKYATQKRVLLEVTLIKL 359
>gi|405983955|ref|ZP_11042260.1| DNA polymerase III, subunit gamma and tau [Slackia piriformis YIT
12062]
gi|404388770|gb|EJZ83852.1| DNA polymerase III, subunit gamma and tau [Slackia piriformis YIT
12062]
Length = 1031
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 188/377 (49%), Gaps = 17/377 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++VGQ + R+L +AI V+ YLF GPRGTGKT+ +R+ A AL C
Sbjct: 4 ALYRKYRPQTFEDVVGQTHIERTLKNAIESDKVSHAYLFCGPRGTGKTTTARLLAKALLC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDS-----VRINRSDRVGSLMKSAFLPPFSSR 410
P G C +C + G DV E+D+ V R + +G + + P R
Sbjct: 64 EHGPTPSPDGTCEQCLAIAEGNHPDVNELDAASRTGVENVREEIIGRVQYA----PTRGR 119
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
+KI+IIDE +L + +L +LE HVVFV+ T + K+P + SR Q++ F ++
Sbjct: 120 YKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFVLCTTDPQKVPETIHSRCQRFDFHRLS 179
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYE 529
+ +I SRL +C+ E + F+ ALD A ++ G +RDA L+QL + G K+TL +A
Sbjct: 180 NDEIVSRLGAVCMAEGVEFEGDALDLAAHRAQGGMRDALTTLEQLIAFGGGKVTLEVAQS 239
Query: 530 LIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA----- 584
++G + ++ +++ + D + E + + D + LA I D+
Sbjct: 240 VLGSIDATDISTVVNGIVKRDAAMCFTWLSEYVETGADLARFARDLAAYIRDLYVLCLTD 299
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
G D +A + +LS L++L + +LR S + +AL ++
Sbjct: 300 GALAVDAPQASRASMAAEAQAFGADRLSYVLRVLGDLNNELRTSTNPRLSFEIALTRMVR 359
Query: 645 SESSLDLNDSKLCLRYA 661
ES L L L R A
Sbjct: 360 PESDLTLE--ALAARIA 374
>gi|260584502|ref|ZP_05852249.1| DNA polymerase III, gamma and tau subunits [Granulicatella elegans
ATCC 700633]
gi|260158020|gb|EEW93089.1| DNA polymerase III, gamma and tau subunits [Granulicatella elegans
ATCC 700633]
Length = 573
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 198/356 (55%), Gaps = 2/356 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRKWRPQKFEDMVGQTAVTKTLKNAIIHHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 LNPQDGEPCNDCLLCKGITEGTIGDVIEIDAASNNGVEEIRDIRDKARYAPTQATYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + +SR+Q++ F +I + +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKNVIFILATTEPHKIPATIISRTQRFDFRRITNDEII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLR I +E I +++ AL IA +NG +RDA LLDQ +S K++ A ++ G +
Sbjct: 185 QRLRYILEQEEIAYEEEALSVIARCANGGMRDALSLLDQVISFSDDKVSFEQAIQVSGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+DD +++ + L +++ ++L+ + +LI + D+L K D
Sbjct: 245 TDDLMIEFVRLLTQQQAQAALLQLQDLLLLGKEASRLIEEWLEFSRDLLVAKQTGDMI-G 303
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
R F + E + L R + L++T++++R + T L V ++++ ++D
Sbjct: 304 RSEVFVEFAKEVEEAFLYRFMDALNQTQQEMRFTTKPTISLEVFTIKMAQPVVAVD 359
>gi|325833707|ref|ZP_08166122.1| DNA polymerase III, subunit gamma and tau [Eggerthella sp. HGA1]
gi|325485247|gb|EGC87717.1| DNA polymerase III, subunit gamma and tau [Eggerthella sp. HGA1]
Length = 743
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 191/364 (52%), Gaps = 7/364 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++VGQ + R++ +AI + V+ YLF GPRGTGKT+ +R+ A AL C
Sbjct: 4 ALYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSAFLPPFSSRFKIF 414
+P G C +C + ++G DV E+D+ R + ++ P R+KI+
Sbjct: 64 ECGPTPEPDGTCDDCVMIANGEHPDVYELDAASRTGVENVREEIIGRVQFAPTRGRYKIY 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE HVVF++ T + K+P + SR Q++ F +I I
Sbjct: 124 IIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQRFDFRRISAESI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGI 533
SRL ICV E + F+ ALD IA ++ G +R+A L+QL G+ K+T+ +A L+G
Sbjct: 184 VSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSLEQLIAFGEGKVTMEVAERLLGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLE 589
+ ++L +++ + D ++ E + + D Q + LA N+ + LAG +
Sbjct: 244 IDTNDLAEIVRAIGTRDVASCFRWTAEYVETGADLAQFVRDLAEHMRNMYVLSLAGADVA 303
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ SE + +L+R L +L + +L+ S + +AL ++ +S
Sbjct: 304 LEVSETVRRELASELPLFGPDRLARLLGVLGDLSAELKTSTNPRLSFEIALTRMVRPDSD 363
Query: 649 LDLN 652
L L
Sbjct: 364 LTLE 367
>gi|297587504|ref|ZP_06946148.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
53516]
gi|297574193|gb|EFH92913.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
53516]
Length = 538
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 196/353 (55%), Gaps = 8/353 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ +K+RP+ FD++ GQ + L + I ++ Y+F G RGTGKTS ++IFA A+NC
Sbjct: 3 AIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAINC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D PC C C + D+ E+D+ R D + L PP ++K++I
Sbjct: 63 LDLQDGNPCNKCENCLSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKLKYKVYI 122
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L +E +H+VF++ T E+DK+P++ LSR Q+Y F I DI+
Sbjct: 123 IDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINAKDIS 182
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
++ I + D A+ IA K++G++RDA +LDQ LS+ + IT +++GIV
Sbjct: 183 DNIKYILNDLNRKMDDDAIKLIANKADGAMRDALSILDQVLSIEKENITKQDINDILGIV 242
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ-LISQLANLIMDILAGK-CLEDCS 592
+ + L++ + D + + + +K P++ ++ +L N ++L K LE+
Sbjct: 243 DNKGIFKLVNSIIKKDAAEVLNNLYTISHNK--PVENVMDELLNHFRNLLLSKNGLENIR 300
Query: 593 EARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + S++++ +++ ++ I+ E +K+L+ + +Q L + +++L
Sbjct: 301 QNNTQYNDDYNSQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|69248217|ref|ZP_00604680.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|68194503|gb|EAN09000.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
Length = 400
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|257790371|ref|YP_003180977.1| DNA polymerase III subunits gamma and tau [Eggerthella lenta DSM
2243]
gi|257474268|gb|ACV54588.1| DNA polymerase III, subunits gamma and tau [Eggerthella lenta DSM
2243]
Length = 735
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 191/364 (52%), Gaps = 7/364 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++VGQ + R++ +AI + V+ YLF GPRGTGKT+ +R+ A AL C
Sbjct: 4 ALYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSAFLPPFSSRFKIF 414
+P G C +C + ++G DV E+D+ R + ++ P R+KI+
Sbjct: 64 ECGPTPEPDGTCDDCVMIANGEHPDVYELDAASRTGVENVREEIIGRVQFAPTRGRYKIY 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE HVVF++ T + K+P + SR Q++ F +I I
Sbjct: 124 IIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQRFDFRRISAESI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGI 533
SRL ICV E + F+ ALD IA ++ G +R+A L+QL G+ K+T+ +A L+G
Sbjct: 184 VSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSLEQLIAFGEGKVTMEVAERLLGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLE 589
+ ++L +++ + D ++ E + + D Q + LA N+ + LAG +
Sbjct: 244 IDTNDLAEIVRAIGTRDVASCFRWTAEYVETGADLAQFVRDLAEHMRNMYVLSLAGADVA 303
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ SE + +L+R L +L + +L+ S + +AL ++ +S
Sbjct: 304 LEVSETVRRELASELPLFGPDRLARLLGVLGDLSAELKTSTNPRLSFEIALTRMVRPDSD 363
Query: 649 LDLN 652
L L
Sbjct: 364 LTLE 367
>gi|157691309|ref|YP_001485771.1| DNA polymerase III subunits gamma and tau [Bacillus pumilus
SAFR-032]
gi|157680067|gb|ABV61211.1| DNA-directed DNA polymerase III gamma/tau subunits [Bacillus
pumilus SAFR-032]
Length = 570
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 190/360 (52%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EKSPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTKDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+++I E++N + +L+ IA+ ++G +RDA LLDQ +S G+++T+ A + G V
Sbjct: 185 GRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S + L + + + + EL++ D +LI + D+L K D
Sbjct: 245 SQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDMLLYKTAPDLEGV 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ F + Q L +++L+++ ++++ + H + VA+++L + + +
Sbjct: 305 LEKVKVDENFVTLSDRVTPQFLYETIEVLNKSHQEMKWTNHPRIFFEVAVVKLCQATAGI 364
>gi|379020246|ref|YP_005296908.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus M013]
gi|359829555|gb|AEV77533.1| DNA polymerase III subunits gamma and tau [Staphylococcus aureus
subsp. aureus M013]
Length = 565
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 182/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECGDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|317488829|ref|ZP_07947360.1| DNA polymerase III, partial [Eggerthella sp. 1_3_56FAA]
gi|316912058|gb|EFV33636.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
Length = 506
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 191/364 (52%), Gaps = 7/364 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++VGQ + R++ +AI + V+ YLF GPRGTGKT+ +R+ A AL C
Sbjct: 4 ALYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSAFLPPFSSRFKIF 414
+P G C +C + ++G DV E+D+ R + ++ P R+KI+
Sbjct: 64 ECGPTPEPDGTCDDCVMIANGEHPDVYELDAASRTGVENVREEIIGRVQFAPTRGRYKIY 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE HVVF++ T + K+P + SR Q++ F +I I
Sbjct: 124 IIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQRFDFRRISAESI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGI 533
SRL ICV E + F+ ALD IA ++ G +R+A L+QL G+ K+T+ +A L+G
Sbjct: 184 VSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSLEQLIAFGEGKVTMEVAERLLGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLE 589
+ ++L +++ + D ++ E + + D Q + LA N+ + LAG +
Sbjct: 244 IDTNDLAEIVRAIGTRDVASCFRWTAEYVETGADLAQFVRDLAEHMRNMYVLSLAGADVA 303
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ SE + +L+R L +L + +L+ S + +AL ++ +S
Sbjct: 304 LEVSETVRRELASELPLFGPDRLARLLGVLGDLSAELKTSTNPRLSFEIALTRMVRPDSD 363
Query: 649 LDLN 652
L L
Sbjct: 364 LTLE 367
>gi|450119857|ref|ZP_21865316.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
ST6]
gi|449230855|gb|EMC30097.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
ST6]
Length = 558
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQIFDEMVGQEVVAKTLKQAVASEKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL I+L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDISLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|430829572|ref|ZP_19447664.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0269]
gi|430480325|gb|ELA57501.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E0269]
Length = 581
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ + L + + + +++ + + + + + D+L A +E+
Sbjct: 245 TDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLIYQQAPNLVEE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 305 QSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|422860315|ref|ZP_16906959.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK330]
gi|327469511|gb|EGF14980.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK330]
Length = 556
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 179/322 (55%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ + I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 THIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ V+ A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDVVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H+SE ++ L
Sbjct: 291 DLIIVKTGGENHHSSELFLENL 312
>gi|222523851|ref|YP_002568321.1| DNA polymerase III subunits gamma and tau [Chloroflexus sp.
Y-400-fl]
gi|222447730|gb|ACM51996.1| DNA polymerase III, subunits gamma and tau [Chloroflexus sp.
Y-400-fl]
Length = 598
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 183/353 (51%), Gaps = 7/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+R F ELVGQ VV++L +AI+ V YLF GPRG GKT+ +R+ A A+NC
Sbjct: 5 SLYRKWRSQTFAELVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAKAVNC 64
Query: 356 LSLED-QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
L+ + +PCG+C CA + GR+ DV E+D+ + +++ P +R K++
Sbjct: 65 LNPDPTARPCGVCEMCAAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAEARMKVY 124
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE H +F++ T E+ K+P + LSR Q++ F + +
Sbjct: 125 IIDETHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRHSVSAM 184
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGI 533
A+ LRRI E I + IA + GS+RDA +L+QL S + ITL L+G+
Sbjct: 185 AAHLRRIAAAEGIVLADGVPEAIARAATGSMRDALGILEQLASFVEGPITLPQVQSLLGM 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQL-----ANLIMDILAGKCL 588
+ E+ L+ ++ D + + + D Q L A +++ + L
Sbjct: 245 TAAAEVDALITALVNHDLTAALRAVHGVANQGADVRQFTRDLVERLRAVMVLKATGDRTL 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
D S+ G+ +ADM L +K+ S + QLR + + L VA+++
Sbjct: 305 LDLSDDEVALLGQWVQQADMAALVHWVKLFSNLDAQLRTTPYGQLPLEVAVVE 357
>gi|335040883|ref|ZP_08534003.1| DNA polymerase III, subunits gamma and tau [Caldalkalibacillus
thermarum TA2.A1]
gi|334179187|gb|EGL81832.1| DNA polymerase III, subunits gamma and tau [Caldalkalibacillus
thermarum TA2.A1]
Length = 582
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 179/354 (50%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ + ++L +A+ T YLF GPRGTGKTS ++I A A+NC
Sbjct: 5 ALYRVWRPQTFRDVIGQEHITQTLQNALVNQTYTHAYLFTGPRGTGKTSTAKIMAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C + G DV E+D+ N D + L P R K++I
Sbjct: 65 QEAPTAEPCNQCAACRGITQGTVVDVVEIDAASNNGVDEIRDLRDKVKYAPTEVRLKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E K+P + +SR Q++ F +I ++
Sbjct: 125 IDEVHMLSQGAFNALLKTLEEPPSHVMFILATTEPHKIPLTIMSRCQRFDFKRISQKEML 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL+ IC EE + AL+ + + G +RD LLDQ +S ++T++ + G V
Sbjct: 185 KRLKLICAEEGFQVQEEALELLTQVAEGGMRDCLSLLDQVVSYADGEVTVADVEAVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ + L DL D L + T + R L+ +P++++ L D+L + +E
Sbjct: 245 AQEALTDLADCLLRNKTEEAIRRLNLLIEEGKEPVRIVEDLIYFYRDVLLYRQAPGSAEG 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + + L +A++ LS ++ ++ + H +L VAL+QL+
Sbjct: 305 FQRLQLTEQLKERIETYQDEHLFQAIERLSRAQQDMKWTHHPRVFLEVALIQLT 358
>gi|431745412|ref|ZP_19534258.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2134]
gi|430610459|gb|ELB47604.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E2134]
Length = 581
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+D+ + L + + + +++ + + + + + D+L A +E+
Sbjct: 245 TDEMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDMLQYCRDLLIYQQAPNLVEE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S ++ F + +L +KILS+T+ ++R + +L VA ++L+
Sbjct: 305 QSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVATVKLA 357
>gi|449991663|ref|ZP_21821984.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NVAB]
gi|449180770|gb|EMB82908.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NVAB]
Length = 558
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQIFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|425056863|ref|ZP_18460302.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
504]
gi|403041426|gb|EJY52441.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
504]
Length = 581
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/364 (31%), Positives = 196/364 (53%), Gaps = 20/364 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWL---TVALLQ 641
+E+ S ++ F + +L +KILS+T+ ++R + +L TV L Q
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIRFTNSAAIYLEVTTVKLAQ 358
Query: 642 LSSS 645
L S+
Sbjct: 359 LPSA 362
>gi|422865654|ref|ZP_16912279.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1058]
gi|422871080|ref|ZP_16917573.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1087]
gi|327489199|gb|EGF20992.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1058]
gi|328946036|gb|EGG40182.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1087]
Length = 556
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E INF+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTYIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ S+ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALISHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|427393500|ref|ZP_18887278.1| DNA polymerase III, subunit gamma and tau [Alloiococcus otitis ATCC
51267]
gi|425730501|gb|EKU93336.1| DNA polymerase III, subunit gamma and tau [Alloiococcus otitis ATCC
51267]
Length = 590
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 194/363 (53%), Gaps = 6/363 (1%)
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
T +L + +RP F ++ GQ+VV ++L +AI + YLF GPRGTGKTS ++IFA A
Sbjct: 2 THQALYRVWRPQSFADVSGQHVVTKTLKNAIKNDNTSHAYLFTGPRGTGKTSVAKIFAKA 61
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
+NC +D +PC C+ C + G DV E+D+ N + + + + A P S+ +K
Sbjct: 62 INCPYSDDGEPCNECQICQEITQGSLGDVIEIDAASNNGVEEIRDIREKANYAPTSAVYK 121
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
++IIDE +L + +L +LE +VVF++ T E K+P + +SR+Q++ F +I +
Sbjct: 122 VYIIDEVHMLSSGAFNALLKTLEEPPANVVFILATTEPHKIPATIISRTQRFDFKRIDNQ 181
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELI 531
DI RL I + + + + A+ +A + G +RDA +LDQ LS + ++T +A ++
Sbjct: 182 DIIDRLIYILEADQVAYSKEAVLNLANAAEGGMRDALSMLDQALSFMTDELTEEVALQIT 241
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
G ++ LL+ L + T + +E++ DP + + + D+L + +
Sbjct: 242 GSITQSLLLEYLQVISQGQTEEGLKLLQEVLGEGKDPSRFVEDAIMITRDLLLYQTSQGD 301
Query: 592 SEARK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ K + F + D + + +L++T+ LR+S H +L +A ++LS
Sbjct: 302 NFVPKLARLDDQFKDLARDLDKEMAYHIIDVLNQTQDDLRLSNHGEVYLEIATVKLSQPS 361
Query: 647 SSL 649
S++
Sbjct: 362 SAV 364
>gi|357239853|ref|ZP_09127187.1| DNA polymerase III, subunit gamma and tau [Streptococcus ictaluri
707-05]
gi|356751609|gb|EHI68761.1| DNA polymerase III, subunit gamma and tau [Streptococcus ictaluri
707-05]
Length = 560
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 156/262 (59%), Gaps = 2/262 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ+++ +L A+ G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQSLISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQADIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
L I +E I++ AL+ IA ++ G +RDA +LDQ LSL + +++LS+A E+ G
Sbjct: 184 QHLATILDKEVISYQLDALNLIARRAEGGMRDAFSILDQALSLSSENQVSLSVAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTV 555
+S L D + L DTS +
Sbjct: 244 ISMAALDDYVQHLLQEDTSGAL 265
>gi|422844197|ref|ZP_16890907.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325685702|gb|EGD27781.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 607
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 187/355 (52%), Gaps = 14/355 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++VGQ + +L +++ RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L++ +PC C C G D+ E+D+ N D + L+ P ++K++I
Sbjct: 65 LNLQEGEPCNECSNCLDADQGAMPDIVEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE VVF++ T EL K+P + +SR+Q+Y+F + + +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEAMV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E + ++ AL IA ++G +RDA +LDQ LS + A E+ G
Sbjct: 185 QRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL------AGKCL 588
+ +++ LL L+ D+ + A+ ++ +++++ +L + + G+ L
Sbjct: 245 AQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGEFL 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
D F + ++ + S+ + ++ LR + Q L V L+Q S
Sbjct: 305 TDD-------FAQEIAQQSPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQAS 352
>gi|87301610|ref|ZP_01084450.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701]
gi|87283827|gb|EAQ75781.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701]
Length = 607
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 180/342 (52%), Gaps = 8/342 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L QK+RP FD+LVGQ V +L SA+ + + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 10 LPQKYRPQRFDQLVGQEAVASTLTSALRQNRIAPAYLFSGPRGTGKTSSARILARSLNCL 69
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ P CG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 70 TAAGPTPDPCGSCELCRSITAGNALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 129
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 130 VIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEAL 189
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
LR I EE I AL +A ++ G +RDAE LLDQLSLL I + ++L+G V
Sbjct: 190 EGHLRFIASEEEIGITPEALHVVALRAQGGLRDAESLLDQLSLLSAPIEATAVWDLLGAV 249
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKC-----L 588
+ ELL+L+ D + R L+ +P ++ LA+L+ D +LAG L
Sbjct: 250 PEQELLELVAAMGEGDPVGILETCRRLLERGREPGAVLQGLASLLRDLVLAGVAPDRLEL 309
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKH 630
S + + +L +L +E+QLR S
Sbjct: 310 TAVSTQLQPLLPEQARRIGKARLLSWQALLKGSEQQLRQSAQ 351
>gi|339444406|ref|YP_004710410.1| DNA polymerase III [Eggerthella sp. YY7918]
gi|338904158|dbj|BAK44009.1| DNA polymerase III [Eggerthella sp. YY7918]
Length = 758
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 202/409 (49%), Gaps = 10/409 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++VGQ + R++ +AI + V+ YLF GPRGTGKT+ +R+ A AL C
Sbjct: 4 ALYRKYRPQIFEDVVGQEHIERTIKNAIEQDKVSHAYLFTGPRGTGKTTTARLLAKALLC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSAFLPPFSSRFKIF 414
+P G C +C + ++G DV E+D+ R + ++ P R+KI+
Sbjct: 64 EHGPTPEPDGTCDDCVMIANGEHPDVYELDAASRTGVENVREEIIGRVQFAPTRGRYKIY 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE HVVF++ T + K+P + SR Q++ F ++ +
Sbjct: 124 IIDEVHMLSTAAFNALLKTLEEPPSHVVFILATTDPQKVPETIHSRCQRFDFRRLSAEAM 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGI 533
SRL ICV E + F+ ALD IA ++ G +R+A L+QL G+ K+TL +A L+G
Sbjct: 184 VSRLGAICVSEDVEFEGEALDLIAHRAEGGMRNALTSLEQLIAFGEGKVTLEVAERLLGG 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN-----LIMDILAGKCL 588
V ++L +++ + D + E + + D Q LA +M ++
Sbjct: 244 VDTNDLAEIVRAIGARDIAGCFRWTAEYVETGADLAQFTRDLAEHVRNMYVMSLVDTDVA 303
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ EA + + +L+R L +L + +L+ S + +AL ++ +S
Sbjct: 304 LEVGEAERRELAQELPLFGPDRLARLLGVLGDLSAELKTSTNPRLSFEIALTRMVRPDSD 363
Query: 649 L---DLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKL 694
L L + L H T +PR + ++ + G A+ +
Sbjct: 364 LTLAGLAERIEALEAGHSAVAHVTSTAAPRATAQNAAQVVPTGSSASAV 412
>gi|150392457|ref|YP_001322506.1| DNA polymerase III subunits gamma and tau [Alkaliphilus
metalliredigens QYMF]
gi|149952319|gb|ABR50847.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus
metalliredigens QYMF]
Length = 559
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 187/361 (51%), Gaps = 7/361 (1%)
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
T +L +K+RP F++++GQ+ V+++L + I V YLF G RGTGKTS ++IFA A
Sbjct: 2 TYKALYRKWRPRIFEDVIGQDHVIKTLKNQIEANNVAHAYLFSGTRGTGKTSTAKIFARA 61
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
+NC ++ PC C C + DV E+D+ N D + + ++ PP ++K
Sbjct: 62 VNCKDEQNVNPCNECEVCQGIITESIMDVIEIDAASNNGVDHIREIRENVKYPPSKGKYK 121
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
++IIDE +L + +L +LE HV+F++ T E KLP + LSR Q++ F +K
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPQKLPATILSRCQRFDFKPVKTD 181
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELI 531
D+ +L IC IN ++ AL +A + G++RDA +L+Q +S ++T +
Sbjct: 182 DMMKQLVYICKSMDINAEEEALRVVAMNAEGALRDALSILEQCISFHPGQLTYHDVTNTL 241
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---L 588
G+VS + L D+ + + S + ++++ D LI L +L L
Sbjct: 242 GMVSHEFLFDMAEAFTKQNASKAIELVQQVIMEGKDVQVLIKDLIGYYRGLLLANMNVEL 301
Query: 589 EDCSEARKNFFG--KHTSEA-DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
ED + K S+A + +L R++ +L+E E + + S H L VAL+ L S
Sbjct: 302 EDLLSFSQEILSRIKEQSKAFETNELIRSIHVLTEAESKAKYSTHPRILLEVALITLCRS 361
Query: 646 E 646
E
Sbjct: 362 E 362
>gi|431792084|ref|YP_007218989.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430782310|gb|AGA67593.1| DNA polymerase III, subunit gamma/tau [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 560
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 184/350 (52%), Gaps = 3/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ V ++L++A+++ V YLF GPRGTGKT+ +++ A ALNC
Sbjct: 5 ALYREWRPKNFRDMVGQEHVTKTLINALAQNKVAHAYLFSGPRGTGKTTTAKVLAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C G + +V E+D+ D + L L S+ K++I
Sbjct: 65 EHRDGVEPCNQCASCLSIDQGSAMEVYEIDAASNRGIDEIRDLRDKVRLSAGESKTKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + VVF++ T E+ K+P + LSR Q++ F +I I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIQ 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ L ++C + D+ AL IA KS G +RDA +LDQ LL K+ + Y+++G+V
Sbjct: 185 NHLEKVCQAIGRDVDEEALQVIAQKSEGGLRDALSILDQCLLLDGKLGVVQVYQVLGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDCS 592
++ L+D + + T+ R + + +DP Q+I +L + L A + +
Sbjct: 245 EEFSAQLVDQLAEGNYAATLARLGDGINQGMDPRQIIRELLEYLRQALLYAATQAFPQIA 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
K + ++ L + + IL + E QL+ + + + L+Q+
Sbjct: 305 PHLKEKLAFQCEKIGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQV 354
>gi|303234953|ref|ZP_07321578.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
BVS033A4]
gi|302494071|gb|EFL53852.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
BVS033A4]
Length = 537
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 196/353 (55%), Gaps = 8/353 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ +K+RP+ FD++ GQ + L + I ++ Y+F G RGTGKTS ++IFA A+NC
Sbjct: 3 AIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAINC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L+D PC C C + D+ E+D+ R D + L PP ++K++I
Sbjct: 63 LDLQDGNPCNKCENCQSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKLKYKVYI 122
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L +E +H+VF++ T E+DK+P++ LSR Q+Y F I DI+
Sbjct: 123 IDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSKDIS 182
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
++ I + D A++ IA K++G++RDA +LDQ LS+ + IT +++GIV
Sbjct: 183 DNIKYILNDLNRKMDDDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDILGIV 242
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ-LISQLANLIMDILAGK-CLEDCS 592
+ + L++ + D + + + +K P++ ++ +L N ++L K LE
Sbjct: 243 DNKGIFKLVNSIIKKDATEVLGNLYTISHNK--PVENVMDELLNHFRNLLLSKNGLEKIR 300
Query: 593 EARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + +++++ +++ ++ I+ E +K+L+ + +Q L + +++L
Sbjct: 301 QNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|295702260|ref|YP_003595335.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium DSM
319]
gi|294799919|gb|ADF36985.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium DSM
319]
Length = 562
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 193/368 (52%), Gaps = 10/368 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ ++++L +A+ + + YLF GPRGTGKT+A++I A A+NC
Sbjct: 5 ALYRVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C + G DV E+D+ N D + + P + R+K++I
Sbjct: 65 EKAPIAEPCNECATCRGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAPSAVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E K+P + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRCQRFDFKRISPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ + E + + AL IA S G +RDA LLDQ +S +K++L + G V
Sbjct: 185 YRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLLDQAISYSTEKVSLEDVLSITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-- 592
S ++ ++ + + + L+++ DP + + L D+L + E+ +
Sbjct: 245 SQSFIVKIVQAIFNKNIVEALDSVESLIKNGKDPARFVEDLIFYYRDVLLYQASEENAYL 304
Query: 593 ---EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS---- 645
A F + +S+ D + + + L++T+++++ S H L VAL++L+ S
Sbjct: 305 LEKAAVNEEFKELSSKMDSAFIYKVIAELNQTQQEMKWSNHPRVLLEVALVKLAQSSTNQ 364
Query: 646 ESSLDLND 653
ES+L D
Sbjct: 365 ESALPYQD 372
>gi|258645511|ref|ZP_05732980.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus
DSM 15470]
gi|260402865|gb|EEW96412.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus
DSM 15470]
Length = 638
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 172/323 (53%), Gaps = 6/323 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP+ F E++GQ + +L A + + YLF GPRGTGKTS +RI A A+NC
Sbjct: 5 SLYRKWRPSTFKEIIGQKHISIPILRAFEQNRLAHAYLFSGPRGTGKTSMARILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L++ PC C C ++G S DV E+D D + L +S P + K++I
Sbjct: 65 LDLKNGNPCNECANCKSINTGASMDVYEIDGASARGVDEIRVLRESVRTLPVAGNKKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HV+F++ T E K+P + LSR Q+Y F +I DI
Sbjct: 125 IDEVHMLTKEAFNALLKTLEEPPAHVLFILATTEPAKIPLTILSRCQRYEFHRISVNDIK 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS--LLGKKITLSLAYELIGI 533
L I E ++ A IA ++ G +RDA LLDQ S G +++ + Y+L+G+
Sbjct: 185 EHLLHISQESHLSLTPEAAALIAVRAEGGLRDALSLLDQCSGASAGNELSAEIVYDLLGL 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
++++DL + + +S T+ ++++ +P ++S L I+ K + E
Sbjct: 245 TDKEQIIDLFHMIVCGKSSATLQLFYKILQDGKEPSAILSDLLEHFRSIMICKVNPNAPE 304
Query: 594 ARKNFFGKHTS--EADMQKLSRA 614
+ +G S + D Q+LS A
Sbjct: 305 L--SAYGNKISVIQKDAQELSDA 325
>gi|124021779|ref|YP_001016086.1| DNA polymerase III subunits gamma/tau [Prochlorococcus marinus str.
MIT 9303]
gi|123962065|gb|ABM76821.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9303]
Length = 604
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 161/299 (53%), Gaps = 2/299 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP FD LVGQ+ + +L A+ + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 8 LHHKYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + +PCG C C ++G + DV E+D+ D + L++ + P +R+K++
Sbjct: 68 NCDQPTPEPCGNCELCKSIAAGTALDVIEIDAASNTGVDNIRELIERSRFAPVQARWKVY 127
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DEC +L + +L +LE VVFV+ T + ++ + LSR Q++ F +I +
Sbjct: 128 VVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEAL 187
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I EAI + AL +A ++ G +RDAE LLDQLSLL I +EL+G V
Sbjct: 188 EKHLEMIATREAIPINPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKAEAVWELMGAV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ ELL L +D + R L+ DP L+ LA ++ D++ D E
Sbjct: 248 PEQELLKLAAALAQADPLCLLETCRNLLNRGRDPGALLQGLAAVLRDLVLMTAAPDRPE 306
>gi|104774441|ref|YP_619421.1| DNA polymerase III, subunit gamma/tau [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103423522|emb|CAI98424.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 607
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 187/355 (52%), Gaps = 14/355 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++VGQ + +L +++ RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L++ +PC C C G D+ E+D+ N D + L+ P ++K++I
Sbjct: 65 LNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE VVF++ T EL K+P + +SR+Q+Y+F + + +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEAMV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E + ++ AL IA ++G +RDA +LDQ LS + A E+ G
Sbjct: 185 QRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL------AGKCL 588
+ +++ LL L+ D+ + A+ ++ +++++ +L + + G+ L
Sbjct: 245 AQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGEFL 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
D F + ++ + S+ + ++ LR + Q L V L+Q S
Sbjct: 305 TDD-------FAQEIAQQSPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQAS 352
>gi|449896717|ref|ZP_21789877.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
R221]
gi|449261682|gb|EMC59148.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
R221]
Length = 558
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQIFDEMVGQEVVAKTLKQAVASEKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|449894307|ref|ZP_21789183.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF12]
gi|449255434|gb|EMC53289.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF12]
Length = 558
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL I+L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDISLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|355682649|ref|ZP_09062554.1| hypothetical protein HMPREF9469_05591 [Clostridium citroniae
WAL-17108]
gi|354810814|gb|EHE95451.1| hypothetical protein HMPREF9469_05591 [Clostridium citroniae
WAL-17108]
Length = 539
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 187/366 (51%), Gaps = 12/366 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++ GQ+ +V++L + I+ + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPVSFEDVKGQDPIVQTLKNQITSERIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C +G S +V E+D+ N + + + PP R++++I
Sbjct: 65 EHPVDGSPCNECPTCKAIQTGSSMNVVEIDAASNNGVENIRDIRDQVQYPPTEGRYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRISLDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
RLR + E I + AL +IA ++GS+RD LLDQ GK +T A E++G
Sbjct: 185 DRLRELTQAEQIEVEDKALMYIAKAADGSLRDGLSLLDQCVAFHYGKVLTYDNALEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSN-------TVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
V + + T + VI+ REL + D + + L LI +
Sbjct: 245 VDAGVFSQMFGAVVDGRTKDCICALEEIVIQGRELGQFVTDFIWYMRNLL-LIQSADDAE 303
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--S 644
L D SE +AD L R +++ SE QLR + + + VAL++L+ +
Sbjct: 304 GLLDMSEENLKQLKADGEKADGPTLMRYIRVFSELSNQLRYATQKRVLVEVALIKLTRPA 363
Query: 645 SESSLD 650
E +LD
Sbjct: 364 MEPNLD 369
>gi|449885667|ref|ZP_21785736.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SA41]
gi|450039248|ref|ZP_21836127.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans T4]
gi|449200587|gb|EMC01611.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans T4]
gi|449255078|gb|EMC52957.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SA41]
Length = 558
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQIFDEMVGQEVVAKTLKQAVASEKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|385816214|ref|YP_005852605.1| DNA polymerase III subunit gamma/tau [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|325126251|gb|ADY85581.1| DNA polymerase III subunit gamma/tau [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 606
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 187/355 (52%), Gaps = 14/355 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++VGQ + +L +++ RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L++ +PC C C G D+ E+D+ N D + L+ P ++K++I
Sbjct: 65 LNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE VVF++ T EL K+P + +SR+Q+Y+F + + +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEAMV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E + ++ AL IA ++G +RDA +LDQ LS + A E+ G
Sbjct: 185 QRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL------AGKCL 588
+ +++ LL L+ D+ + A+ ++ +++++ +L + + G+ L
Sbjct: 245 AQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGEFL 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
D F + ++ + S+ + ++ LR + Q L V L+Q S
Sbjct: 305 TDD-------FAQEIAQQSPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQAS 352
>gi|450076132|ref|ZP_21849697.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N3209]
gi|449212929|gb|EMC13277.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N3209]
Length = 558
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVFV+ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|21282162|ref|NP_645250.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus MW2]
gi|49485342|ref|YP_042563.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus MSSA476]
gi|300911028|ref|ZP_07128477.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
subsp. aureus TCH70]
gi|418933444|ref|ZP_13487269.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIGC128]
gi|448742082|ref|ZP_21724036.1| DNA polymerase III subunit [Staphylococcus aureus KT/314250]
gi|21203598|dbj|BAB94298.1| DNA polymerase III gamma and tau subunits [Staphylococcus aureus
subsp. aureus MW2]
gi|49243785|emb|CAG42210.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus MSSA476]
gi|300887207|gb|EFK82403.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus aureus
subsp. aureus TCH70]
gi|377772239|gb|EHT95991.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIGC128]
gi|445547220|gb|ELY15492.1| DNA polymerase III subunit [Staphylococcus aureus KT/314250]
Length = 565
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 182/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ P ++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSELKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLNQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|384173679|ref|YP_005555064.1| DNA polymerase III, subunits gamma and tau [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349592903|gb|AEP89090.1| DNA polymerase III, subunits gamma and tau [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 563
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 197/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +LD IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLLDQAISFSGDILKIEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + + Q L + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ DL + + ++
Sbjct: 365 AADLPEVDMLMK 376
>gi|450160489|ref|ZP_21880034.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
66-2A]
gi|449239864|gb|EMC38564.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
66-2A]
Length = 558
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTNAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|168184981|ref|ZP_02619645.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
Bf]
gi|237793342|ref|YP_002860894.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
Ba4 str. 657]
gi|182671955|gb|EDT83916.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
Bf]
gi|229262232|gb|ACQ53265.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
Ba4 str. 657]
Length = 541
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ + +L + + + YLF G RGTGKTS ++I + A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C +SG DV E+D+ + + + ++++ PP + K++I
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKNKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR Q++ F +IK+ +I
Sbjct: 125 MDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIKNEEIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR I E+ I D +L+ IA S+G++RDA +LDQ+ G K+ +++G+V
Sbjct: 185 ERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+++ LL + + + D ++ +++ S D I + + +IL K +
Sbjct: 245 TNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNEI 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + + + ++++ R +KIL E E+Q + K +L +A+L++ E
Sbjct: 305 LDMSSENIDLVKEQSEKIRIEEIMRDIKILQEAEQQSKWVKQNRIYLELAVLKMCKIE 362
>gi|336428714|ref|ZP_08608690.1| hypothetical protein HMPREF0994_04696 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336004561|gb|EGN34622.1| hypothetical protein HMPREF0994_04696 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 526
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 189/357 (52%), Gaps = 10/357 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ+ +V +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPERFEDVKGQDHIVTTLRNQIEADRIGHAYLFCGTRGTGKTTIAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D PCG CR C ++G S +V E+D+ N D + ++ P RFK++I
Sbjct: 65 ENPVDGSPCGECRSCRSIAAGASMNVIEIDAASNNGVDNIREIVDEVSYSPAEGRFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPVTILSRCQRYDFKRISIETIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
RLR + V+E + AL ++A ++GS+RDA LLDQ GK++T + +++G
Sbjct: 185 DRLRDLMVQENQQVQEKALRYVAKAADGSMRDALSLLDQCIAFHYGKELTYDMVLDVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CL 588
V + LL L ++ + E++ + Q +S + ++L K +
Sbjct: 245 VDTEVFSRLLRAVLERSVTDCIGILEEIVMQGRELSQFVSDFTWYLRNLLLIKTSEDNAI 304
Query: 589 EDCSEARKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
ED + + + EA M + + R ++ LSE ++R + + + +AL++L
Sbjct: 305 EDVVDVSSDNLVRLKEEAQMAETDAIMRYIRELSELSGRIRYAGQKRILIEMALIKL 361
>gi|385809646|ref|YP_005846042.1| DNA polymerase III subunit gamma/tau [Ignavibacterium album JCM
16511]
gi|383801694|gb|AFH48774.1| DNA polymerase III subunit gamma/tau [Ignavibacterium album JCM
16511]
Length = 553
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 194/364 (53%), Gaps = 10/364 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+E+VGQ + +L +++ + + Y+F GPRG GKT+ +RI A ALNCL
Sbjct: 7 ARKWRPQKFEEVVGQEHITETLKNSLRKNRIAHAYIFTGPRGVGKTTTARILAKALNCLQ 66
Query: 358 LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIID 417
D +PC C C + +S D+ E+D+ D V +L +S P ++K++IID
Sbjct: 67 PVDFEPCNKCDMCRAINEMQSMDIIEIDAATNRGIDEVRTLRESVKYAPTLGKYKVYIID 126
Query: 418 ECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASR 477
E +L E++ L +LE H +FV T ++ K+P + +SR Q++ F +++ I +
Sbjct: 127 EVHMLTTESFNAFLKTLEEPPAHTIFVFATTDIHKVPPTIISRCQRFDFRRLQIETIKHQ 186
Query: 478 LRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSD 536
L++I EE I D AL IA K++G +RDA+ DQ ++ G+ + +++ ++ +
Sbjct: 187 LKKIADEEKIKIDDKALTIIAKKADGGMRDAQSYFDQVIAFCGENVDSETVSKILNLIDE 246
Query: 537 DELLDLLDLALSS------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE- 589
+ ++ D +S DT NT+ + +D LI N++ +L K +
Sbjct: 247 ETYFNISDAIISKSFQTVFDTINTIYQNGWDFTDFLD--GLIEHFRNILTVVLTNKTDQI 304
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+C+E K + + + E L R L L++++++LR S ++ L + L L E S
Sbjct: 305 ECAEIYKPKYLQTSKEFSKGDLLRILNFLAKSQQELRFSNNRKLKLEIILSHLIGLEKSA 364
Query: 650 DLND 653
+++
Sbjct: 365 TISE 368
>gi|450132921|ref|ZP_21870366.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML8]
gi|449152170|gb|EMB55882.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML8]
Length = 558
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTNAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|410656845|ref|YP_006909216.1| DNA polymerase III subunits gamma and tau [Dehalobacter sp. DCA]
gi|410659885|ref|YP_006912256.1| DNA polymerase III subunits gamma and tau, DnaX [Dehalobacter sp.
CF]
gi|409019200|gb|AFV01231.1| DNA polymerase III subunits gamma and tau [Dehalobacter sp. DCA]
gi|409022241|gb|AFV04271.1| DNA polymerase III subunits gamma and tau, DnaX [Dehalobacter sp.
CF]
Length = 558
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 159/288 (55%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ V +L +A+S+ V Y+F GPRGTGKTSA++I A ALNC
Sbjct: 5 ALYREWRPKKFSEMVGQEHVKITLTNALSQNKVAHAYMFSGPRGTGKTSAAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C G + DV E+D+ D + L + L ++K++I
Sbjct: 65 SDRDGAEPCSRCASCLDIEQGNAMDVLEIDAASNRGIDEIRDLREKVKLASSGGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +VVFV+ T E K+P + LSR Q++ F +I IA
Sbjct: 125 IDEVHMLTPEAFNALLKTLEEPPVNVVFVLATTEAHKVPLTILSRVQRFEFHRISAEGIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RL+ +C + + AL IAAK+ G +RDA +LDQ L I + Y++IG+V
Sbjct: 185 MRLQEVCQALGRDIETKALRVIAAKAEGGLRDALSILDQCLLQDDPIRMEHIYQVIGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+ DL D L+ D + T+ + E + DP Q+I +L + + L
Sbjct: 245 ETFSADLTDSLLNQDYALTLAKLGEGISLGRDPRQIIRELLDYLRQAL 292
>gi|450182003|ref|ZP_21888102.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans 24]
gi|449245445|gb|EMC43782.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans 24]
Length = 558
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTNAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|379704958|ref|YP_005203417.1| DNA polymerase III subunits gamma and tau [Streptococcus
infantarius subsp. infantarius CJ18]
gi|374681657|gb|AEZ61946.1| DNA polymerase III, gamma and tau subunits [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 562
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 163/293 (55%), Gaps = 2/293 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ V+ +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKK-ITLSLAYELIGI 533
L I +E I +D+ AL IA + G +RDA +LDQ LSL ++LS+A E+ G
Sbjct: 184 DHLADILGKEGITYDEDALTLIARCAEGGMRDALSILDQALSLTSDNHVSLSIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
S L D + L++ TS + + S + + L N + D+L +
Sbjct: 244 TSMTALDDFVANVLANQTSQALTNLETIFDSGKSMSRFATDLLNYLRDLLVAQ 296
>gi|146319281|ref|YP_001198993.1| DNA polymerase III subunits gamma and tau [Streptococcus suis
05ZYH33]
gi|146321485|ref|YP_001201196.1| DNA polymerase III subunits gamma and tau [Streptococcus suis
98HAH33]
gi|253752319|ref|YP_003025460.1| DNA polymerase III subunits gamma and tau [Streptococcus suis SC84]
gi|253754145|ref|YP_003027286.1| DNA polymerase III subunits gamma and tau [Streptococcus suis P1/7]
gi|253756079|ref|YP_003029219.1| DNA polymerase III subunits gamma and tau [Streptococcus suis
BM407]
gi|386578451|ref|YP_006074857.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386580523|ref|YP_006076928.1| DNA polymerase III subunits gamma and tau [Streptococcus suis JS14]
gi|386588720|ref|YP_006085121.1| DNA polymerase III subunits gamma and tau [Streptococcus suis A7]
gi|403062069|ref|YP_006650285.1| DNA polymerase III subunits gamma and tau [Streptococcus suis S735]
gi|145690087|gb|ABP90593.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 05ZYH33]
gi|145692291|gb|ABP92796.1| DNA polymerase III, gamma/tau subunits [Streptococcus suis 98HAH33]
gi|251816608|emb|CAZ52246.1| DNA polymerase III subunit gamma/tau [Streptococcus suis SC84]
gi|251818543|emb|CAZ56374.1| DNA polymerase III subunit gamma/tau [Streptococcus suis BM407]
gi|251820391|emb|CAR46990.1| DNA polymerase III subunit gamma/tau [Streptococcus suis P1/7]
gi|292558914|gb|ADE31915.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|319758715|gb|ADV70657.1| DNA polymerase III subunits gamma and tau [Streptococcus suis JS14]
gi|354985881|gb|AER44779.1| DNA polymerase III subunits gamma and tau [Streptococcus suis A7]
gi|402809395|gb|AFR00887.1| DNA polymerase III subunits gamma and tau [Streptococcus suis S735]
Length = 555
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L AI +G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTDIQ 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
L I +E + FD+ AL IA ++ G +RDA +LDQ LSL +++TL +A E+ G
Sbjct: 184 EHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEITGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|392412739|ref|YP_006449346.1| DNA polymerase III, subunit gamma/tau [Desulfomonile tiedjei DSM
6799]
gi|390625875|gb|AFM27082.1| DNA polymerase III, subunit gamma/tau [Desulfomonile tiedjei DSM
6799]
Length = 579
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 191/369 (51%), Gaps = 12/369 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP+ F E+VGQ VV++L ++I G V +LF G RG GKT+ +RI A +LNC
Sbjct: 7 LARKYRPSTFSEVVGQGHVVQTLSNSIISGRVAHAFLFCGVRGVGKTTVARILAKSLNCS 66
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ D PC C C SSG S DV+E+D + + + ++ PP +SR+KI
Sbjct: 67 GRDAADPNPCNSCTSCKEISSGTSVDVQEIDGASNTSVENIREINENIKYPPVASRYKII 126
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE ++ + +L +LE HV F+ T E K+P + SR Q+++F I +I
Sbjct: 127 IIDEVHMISINAFNALLKTLEEPPSHVKFIFATTESHKVPPTINSRCQRFNFRTISVKEI 186
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGI 533
A + +I V+E I ++ AL +A ++ GS RD LLDQ ++ ++IT+ +++GI
Sbjct: 187 ADGMEKILVQEGIQAEEEALILLAREAGGSFRDGLSLLDQIIAFSSQRITVQDVTQILGI 246
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
V D L+ L D + ++ EL + DP Q++ L + +++ + + +
Sbjct: 247 VGKDCFGRLVTAVLDRDPAESLKIVHELFQQGFDPEQIVMDLIQYVRNLIVARSIPRNAR 306
Query: 594 ARKNFFGKHTSEADM---------QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ DM Q+L IL ++E ++R S + + + +L+++
Sbjct: 307 TEGLIEAPPSEIQDMEDISGRSSPQELQNLFSILLKSEGEIRRSGNPWVTMEMTILKMAY 366
Query: 645 SESSLDLND 653
+ DL +
Sbjct: 367 APELTDLAE 375
>gi|389857134|ref|YP_006359377.1| DNA polymerase III subunits gamma and tau [Streptococcus suis ST1]
gi|353740852|gb|AER21859.1| DNA polymerase III subunits gamma and tau [Streptococcus suis ST1]
Length = 555
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L AI +G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTDIQ 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
L I +E + FD+ AL IA ++ G +RDA +LDQ LSL +++TL +A E+ G
Sbjct: 184 EHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEITGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|168700663|ref|ZP_02732940.1| DNA polymerase III gamma and tau subunits [Gemmata obscuriglobus
UQM 2246]
Length = 614
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 183/357 (51%), Gaps = 13/357 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
+++++RP F EL+GQ V +L++A+ G V YLF G RG GKTSA+RI A ALNCL
Sbjct: 20 VARRYRPQQFSELIGQEHVAGALVNALKSGRVAHAYLFTGARGVGKTSAARILAKALNCL 79
Query: 357 SLEDQKP--CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ P C C C +G DV E+D N+ + V L ++ P R+KI+
Sbjct: 80 KTDKATPTPCDECDSCRAVMTGDDVDVLEIDGASNNKVEEVRDLRQNVGFRPARGRYKIY 139
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE +HV F++ T E+ K+P + LSR Q++ F + G I
Sbjct: 140 IIDEVHMLSTSAFNALLKTLEEPPEHVKFILATTEVQKIPITILSRCQRFDFAHVGPGKI 199
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGI 533
+L+RI E D AL +A ++ GS+RD++ LLDQ L+ +T ++G
Sbjct: 200 FEQLKRIVEREGHQADDDALRLVARRAAGSMRDSQSLLDQLLASSSGTLTAGQVTAVLGT 259
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
DD +++L L++D + R E + + +LI Q+ ++ C +
Sbjct: 260 AGDDRVIELAKAILANDPKTALDRIAEWVERGLQIGELIDQVVEYWRALMLVSC--GGPD 317
Query: 594 ARKNFFGKHTSEA--------DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
R+ + EA + + L+IL+ T+ ++R + H L +A+++L
Sbjct: 318 VRELPVSPNQHEAIRTQAKAVSLDTVLAGLEILTATKARMRGTPHVQVLLEMAVVRL 374
>gi|116514540|ref|YP_813446.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093855|gb|ABJ59008.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 592
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 187/355 (52%), Gaps = 14/355 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++VGQ + +L +++ RG V+ +LF GPRGTGKTS ++IFA ALNC
Sbjct: 5 ALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+L++ +PC C C G D+ E+D+ N D + L+ P ++K++I
Sbjct: 65 LNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYAPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE VVF++ T EL K+P + +SR+Q+Y+F + + +
Sbjct: 125 IDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNEAMV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +E + ++ AL IA ++G +RDA +LDQ LS + A E+ G
Sbjct: 185 QRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDALEVTGFA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL------AGKCL 588
+ +++ LL L+ D+ + A+ ++ +++++ +L + + G+ L
Sbjct: 245 AQEQVEKLLLALLNGDSQMALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTGQGEFL 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
D F + ++ + S+ + ++ LR + Q L V L+Q S
Sbjct: 305 TDD-------FAQEIAQQSPDRFSQIIDQANDALGSLRFTNQQQIPLEVFLVQAS 352
>gi|163119173|ref|YP_077305.2| DNA polymerase III subunits gamma/tau [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|319648542|ref|ZP_08002757.1| DnaX protein [Bacillus sp. BT1B_CT2]
gi|404487384|ref|YP_006711490.1| DNA polymerase III subunits gamma and tau [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52346379|gb|AAU39013.1| DNA polymerase 3 gamma/tau subunit DnaX [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|145902676|gb|AAU21667.2| DNA polymerase III (gamma and tau subunits) [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|317389390|gb|EFV70202.1| DnaX protein [Bacillus sp. BT1B_CT2]
Length = 566
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 186/357 (52%), Gaps = 14/357 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA+++FA A+NC
Sbjct: 5 ALYRVFRPQLFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKLFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 ERAPVSEPCNECSACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+++I E + ALD IA+ ++G +RDA LLDQ +S G+++T+ A + G V
Sbjct: 185 GRMKKIVEAEQLKVQDGALDIIASAADGGMRDALSLLDQAVSFSGEELTVDDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S + L + S + EL++ DP +LI + D+L + D
Sbjct: 245 SQHYIGKLASTLHEKNVSGALETLNELLQQGKDPAKLIEDMIFYFRDMLLYQTAPDL--- 301
Query: 595 RKNFFGKHTSEADMQKLSRALK---------ILSETEKQLRMSKHQTTWLTVALLQL 642
+ K + + Q LSR + IL+++ ++++ + H + VA+++L
Sbjct: 302 -EGVLEKVKVDEEFQTLSRQIPASDLYEMIDILNKSHQEMKWTNHPRIFFEVAVVKL 357
>gi|406874340|gb|EKD24317.1| hypothetical protein ACD_81C00055G0007 [uncultured bacterium]
Length = 370
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 154/260 (59%), Gaps = 7/260 (2%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +K+RP F++++GQ +VR + +A ++ YLF+G RG+GKTS +R+ A N
Sbjct: 2 LALYRKYRPKRFEDVLGQESIVRIIRNAAKTDRLSHAYLFYGARGSGKTSMARLIAKIAN 61
Query: 355 CLSLEDQ-------KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPF 407
C + +PC C+ C SG + D+ E+D+ D + SL + A L P
Sbjct: 62 CQKRQSDPAFKQLGEPCNSCQACIEIDSGNAMDIIEIDAASTRGIDDIRSLKEGALLSPS 121
Query: 408 SSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFP 467
S +K+FIIDE L + + +L LE QH +F++ T E +K+P + SR+Q++HF
Sbjct: 122 SYAYKVFIIDEVHQLSKDAFNALLKILEEPPQHAIFILATTEYEKVPPTIASRAQRFHFK 181
Query: 468 KIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527
KI ++ +L++I EE+I F++ A++ IAA ++GS RDAE LLDQ++ + + IT+
Sbjct: 182 KIPLKELVEKLKKIVAEESITFEEEAIELIAAGADGSFRDAESLLDQIAAMEETITVESV 241
Query: 528 YELIGIVSDDELLDLLDLAL 547
++G V+ + DL+DL +
Sbjct: 242 ERILGRVAFSRVSDLVDLII 261
>gi|407003314|gb|EKE19906.1| hypothetical protein ACD_8C00087G0006 [uncultured bacterium]
Length = 596
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 154/273 (56%), Gaps = 1/273 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F +++GQ +V++L +AI + YLF GPRGTGKT+ +RIFA A+NC
Sbjct: 4 ALYRKYRPLTFSDVIGQGHIVQTLSNAILHNRIGHAYLFTGPRGTGKTTMARIFARAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + PC C C + G S D+ E+D+ D + L ++ PP ++FK++I
Sbjct: 64 QNPKGADPCLECDVCKNITQGTSLDIFEIDAASNTGVDNIRELRENVKFPPSIAKFKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E+ K+P + +SR Q+Y F ++ I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEIHKVPETIISRCQRYDFTRLSLEHII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+L I E ++ +++AL+ IA S G +RDAE LL Q ++L KKIT E++G
Sbjct: 184 EKLSTIAKTENVSIEKSALEMIAIASEGGMRDAESLLSQVMALEDKKITAKEVEEILGTT 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKID 567
L ++ LS D S+ + EL R D
Sbjct: 244 QRQSLEAMVKYLLSKDASSAITLVNELSRDGYD 276
>gi|374578745|ref|ZP_09651839.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus youngiae
DSM 17734]
gi|374414827|gb|EHQ87262.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus youngiae
DSM 17734]
Length = 550
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/368 (29%), Positives = 187/368 (50%), Gaps = 5/368 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ + ++L++A+ + + YLF GPRGTGKT+A++I A LNC
Sbjct: 5 ALYREWRPKLFKDIVGQEHITKTLMNALKQDRIAHAYLFSGPRGTGKTTAAKILAKTLNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
Q+PC C C G + +V E+D+ + + L ++ L + K++I
Sbjct: 65 EQRNGQEPCNHCSSCVSIDHGSAIEVFEIDAASNRGINEIRDLRETIKLSSIQGKHKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE VVF++ T E+ K+P + LSR Q++ F +I DI
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPPQVVFILATTEVQKIPLTILSRVQRFEFHRIPVIDIQ 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RL +C D AL IA KS G +RDA +LDQ L I + Y ++G+V
Sbjct: 185 KRLADVCSSLKRQVDSGALTVIAQKSEGGLRDALSILDQCLLQDDPIGVEEVYLVLGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN----LIMDILAGKCLEDC 591
+ L+D SSD S + E ++ DP Q+I +L + +++ + G+
Sbjct: 245 ETYSSQLIDTISSSDYSECLGLLSEGIQQGRDPRQIIRELLDYLRQMLLTVATGETPAAA 304
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
+ G+ + + + ++ R + IL + E QL+ + + + L+Q +
Sbjct: 305 PHIQDRLIGQ-SRQIGISRILRWITILLQGEGQLKYASNARLAAELLLVQTIHGSQPANT 363
Query: 652 NDSKLCLR 659
ND + LR
Sbjct: 364 NDQEEILR 371
>gi|389571541|ref|ZP_10161632.1| DNA polymerase III subunit gamma/tau [Bacillus sp. M 2-6]
gi|388428780|gb|EIL86574.1| DNA polymerase III subunit gamma/tau [Bacillus sp. M 2-6]
Length = 570
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 190/356 (53%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EKSPVSEPCNECDACRGITTGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTKDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E++N + +L+ IA+ ++G +RDA LLDQ +S G+++T+ A + G V
Sbjct: 185 GRMEKIVDAESLNIQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + + + + EL++ D +LI + D+L K LE
Sbjct: 245 SQHFISQLAEAIFEQNIAIALDTLNELLQQGKDAAKLIEDMIFYFRDMLLYKTAPDLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
E K + F + Q L +++L+++ ++++ + H + VA+++L S
Sbjct: 305 LEKVKVDDKFVALSERVAPQFLYETIEVLNKSHQEMKWTNHPRIFFEVAVVKLCQS 360
>gi|373469979|ref|ZP_09561135.1| DNA polymerase III, subunit gamma and tau [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371763434|gb|EHO51910.1| DNA polymerase III, subunit gamma and tau [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 386
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 192/360 (53%), Gaps = 10/360 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ FDE+VGQ + R+L + + G ++ YLF G RGTGKTS ++I A ALNC
Sbjct: 5 ALYRKFRPSNFDEVVGQEAITRTLKNQLKTGRISHAYLFCGTRGTGKTSIAKIMARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PC C C + S +V E+D+ N D + + + PP R+K+FI
Sbjct: 65 EHPTEAGPCNECPTCKSILNETSINVVEIDAASNNGVDNIRDIKEQVQYPPTFGRYKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE Q+V+F++ T E+ K+P + LSR Q+Y F +I I+
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPQYVIFILATTEVHKIPITVLSRCQRYDFKRISVDTIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
RL+++C E ++ + A+D+IA ++G++RDA LLD+ +S L +KIT +++G
Sbjct: 185 QRLKKLCKAEGVDIEDRAVDYIAKAADGAMRDALSLLDECISFLQNEKITFDAVLDILG- 243
Query: 534 VSDDELLD-LLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------ 586
SD + D LLD + +T + + + + + Q ++ + +IL K
Sbjct: 244 ASDISIFDSLLDGITAGNTIDVLNILNDAVTDGKEIGQFVTDFLWYLRNILILKSTQNDS 303
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
L D S+ + S + L R ++ LSE +L+ + + + ++L + +
Sbjct: 304 TLVDMSQQNLQNLKEKASAVSKETLMRYIRNLSELSNKLKSATQKRVVAELEFIRLMTPQ 363
>gi|153815986|ref|ZP_01968654.1| hypothetical protein RUMTOR_02231 [Ruminococcus torques ATCC 27756]
gi|317500926|ref|ZP_07959136.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089174|ref|ZP_08338077.1| hypothetical protein HMPREF1025_01660 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439332|ref|ZP_08618947.1| hypothetical protein HMPREF0990_01341 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145846633|gb|EDK23551.1| DNA polymerase III, subunit gamma and tau [Ruminococcus torques
ATCC 27756]
gi|316897629|gb|EFV19690.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
gi|330405951|gb|EGG85477.1| hypothetical protein HMPREF1025_01660 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336016249|gb|EGN46038.1| hypothetical protein HMPREF0990_01341 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 539
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 184/355 (51%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F ++ GQ+ ++ +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPAEFGDVKGQDHIITTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C ++G S +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVDGSPCGECEMCKSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q Y F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRISIETIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
R++ + E + + AL +IA ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 ERMQELMDTEHVEAEDKALRYIAKAADGSMRDALSLLDQCIAFYLGQKVTYEHVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V D LL +++D + EL+ D QL + + ++L K +ED
Sbjct: 245 VDTDVFSRLLRKVINTDVPGVLDVVEELVMQGRDLTQLTADFTWYLRNLLLVKTSDNIED 304
Query: 591 CSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + E+ M L R +++ SE QL+ + + L VAL++L
Sbjct: 305 VLDVSTENMMQLKEESGMIETAALFRYIRVFSELSGQLKYATQKRIMLEVALIKL 359
>gi|56418552|ref|YP_145870.1| DNA polymerase III subunits gamma and tau [Geobacillus kaustophilus
HTA426]
gi|56378394|dbj|BAD74302.1| DNA-directed DNA polymerase III gamma and tau subunits [Geobacillus
kaustophilus HTA426]
Length = 559
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 185/353 (52%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L SA+ + ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ NR D + + + P S+R+K++I
Sbjct: 65 EQAPAAEPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSARYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRCQRFDFRRIPLPAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SRL+ + + + AL IA ++G +RDA LLDQ +S K+ L + G
Sbjct: 185 SRLKYVASAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSDGKLRLDDVLAMTGAA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S L ++ DT+ + + +M DP +L+ L D+L K A
Sbjct: 245 SFAALSSFIEAIHRKDTAAVLQQLETMMAQGKDPHRLVEDLILYYRDLLLYKTAPYVEGA 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ F + + L A+++L++++++++ + H L VAL++L
Sbjct: 305 IQIAVVDEAFTSLSEMIPVSNLYEAIELLNKSQQEMKWTNHPRLLLEVALVKL 357
>gi|375006821|ref|YP_004980449.1| DNA polymerase III (Gamma and tau subunits) [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285665|gb|AEV17349.1| DNA polymerase III (Gamma and tau subunits) [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 560
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 185/353 (52%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L SA+ + ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ NR D + + + P S+R+K++I
Sbjct: 65 EQAPAAEPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSARYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRCQRFDFRRIPLPAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SRL+ + + + AL IA ++G +RDA LLDQ +S K+ L + G
Sbjct: 185 SRLKYVASAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSDGKLRLDDVLAMTGAA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S L ++ DT+ + + +M DP +L+ L D+L K A
Sbjct: 245 SFAALSSFIEAIHRKDTAAVLQQLETMMAQGKDPHRLVEDLILYYRDLLLYKTAPYVEGA 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ F + + L A+++L++++++++ + H L VAL++L
Sbjct: 305 IQIAVVDEAFTSLSEMIPVSNLYEAIELLNKSQQEMKWTNHPRLLLEVALVKL 357
>gi|449951190|ref|ZP_21808571.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11SSST2]
gi|449166547|gb|EMB69481.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11SSST2]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|387785725|ref|YP_006250821.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
LJ23]
gi|449877332|ref|ZP_21783228.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
S1B]
gi|449929231|ref|ZP_21801461.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
3SN1]
gi|450062908|ref|ZP_21844629.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML5]
gi|450083606|ref|ZP_21853022.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N66]
gi|379132126|dbj|BAL68878.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
LJ23]
gi|449164698|gb|EMB67743.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
3SN1]
gi|449205175|gb|EMC05932.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML5]
gi|449213010|gb|EMC13357.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N66]
gi|449251080|gb|EMC49111.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
S1B]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|450105297|ref|ZP_21859809.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF14]
gi|449224898|gb|EMC24522.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF14]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|386586705|ref|YP_006083107.1| DNA polymerase III subunit gamma/tau [Streptococcus suis D12]
gi|353738851|gb|AER19859.1| DNA polymerase III subunit gamma/tau [Streptococcus suis D12]
Length = 555
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L AI +G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTDIQ 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
L I +E + FD+ AL IA ++ G +RDA +LDQ LSL +++TL +A E+ G
Sbjct: 184 EHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEITGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|417089722|ref|ZP_11955636.1| DNA polymerase III subunit gamma/tau [Streptococcus suis R61]
gi|353533851|gb|EHC03490.1| DNA polymerase III subunit gamma/tau [Streptococcus suis R61]
Length = 555
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L AI +G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTDIQ 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
L I +E + FD+ AL IA ++ G +RDA +LDQ LSL +++TL +A E+ G
Sbjct: 184 EHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEITGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|223933163|ref|ZP_03625155.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis
89/1591]
gi|223898224|gb|EEF64593.1| DNA polymerase III, subunits gamma and tau [Streptococcus suis
89/1591]
Length = 555
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L AI +G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTDIQ 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
L I +E + FD+ AL IA ++ G +RDA +LDQ LSL +++TL +A E+ G
Sbjct: 184 EHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEITGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|291548744|emb|CBL25006.1| DNA polymerase III, subunits gamma and tau [Ruminococcus torques
L2-14]
Length = 530
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 187/355 (52%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ F+++ GQ+ +V +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPSEFEDVKGQDHIVTTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PCG C C ++G S +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVNGSPCGECEMCKSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q Y F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRISIETIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
R+R + E + ++ AL +IA ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 DRMRDLMQTEQVEVEEKALRYIAKAADGSMRDALSLLDQCIAFYLGQKLTYDHVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V D LL L D + + +L+ + QL + + ++L K +ED
Sbjct: 245 VDTDVFSRLLRKVLERDVAGVLDIVEDLVMQGRELTQLAADFTWYLRNLLLVKTSDNIED 304
Query: 591 CSEARKNFFGKHTSEADMQKLS---RALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + E+ M +L R ++I SE QL+ + + L VAL++L
Sbjct: 305 VLDVSTENMLQLKEESKMIELDMLLRYIRIFSELSGQLKYATQKRVLLEVALIKL 359
>gi|449916509|ref|ZP_21796882.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
15JP3]
gi|449941820|ref|ZP_21805684.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11A1]
gi|449953369|ref|ZP_21808996.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
4VF1]
gi|450137448|ref|ZP_21871657.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML1]
gi|449151598|gb|EMB55326.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11A1]
gi|449155107|gb|EMB58637.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
15JP3]
gi|449172082|gb|EMB74723.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
4VF1]
gi|449235229|gb|EMC34197.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML1]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|404329053|ref|ZP_10969501.1| DNA polymerase III subunits gamma and tau [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 565
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 187/353 (52%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +L GQ + ++L +A+ R + YLF GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRVYRPQTFHDLAGQQRITQTLQNALVRQQFSHAYLFTGPRGTGKTSAAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C + GR DV E+D+ N D + + P R+K++I
Sbjct: 65 EHAPVAEPCNQCSACRGITEGRIADVIEIDAASNNGVDEIREIRDKVKYAPSEVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T E K+P + +SR Q++ F +I IA
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPEHVVFILATTEPQKIPLTIISRCQQFDFRRIPASAIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + ++ + + AL IA S G +RDA +LDQ + G K+T+ ++ G+V
Sbjct: 185 DRLKFVSDDQHLKAEDEALQLIARASEGGMRDALSVLDQTAAYGDGKVTVQDVLDVTGMV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
SD ++ L + + D + + + EL+ D ++LI QL D+L + LED
Sbjct: 245 SDRLIVALTESLEARDAAAAIEKTAELLDQGKDSLRLIEQLIFYYRDLLLYQTSPDLEDI 304
Query: 592 -SEARKN-FFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
S R + F + ++L + + L++ +++ + H +L + +++L
Sbjct: 305 LSRPRTDPAFRDQAEKIPAERLYQVIHQLNDALLEMKRTSHPRIFLEMVMVKL 357
>gi|154484288|ref|ZP_02026736.1| hypothetical protein EUBVEN_02000 [Eubacterium ventriosum ATCC
27560]
gi|149734765|gb|EDM50682.1| DNA polymerase III, subunit gamma and tau [Eubacterium ventriosum
ATCC 27560]
Length = 541
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 193/366 (52%), Gaps = 10/366 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ FD++ GQ+ +V++L + I+ + YLF G RGTGKTS ++IFA A+NC
Sbjct: 20 ALYRKFRPSTFDQVKGQDHIVQTLKNQINANRIGHAYLFCGTRGTGKTSVAKIFAKAVNC 79
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C ++G + +V E+D+ N D + + P S ++ ++I
Sbjct: 80 EHPVDGSPCNECETCRGITNGSAMNVIEIDAASNNGVDNIRQIRDEIQYSPSSGKYTVYI 139
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F +I IA
Sbjct: 140 IDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEPHKIPITILSRCQRYDFKRISIDTIA 199
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+RL + +E+I + A+ ++A ++GS+RDA LLDQ LG+K+T +++G
Sbjct: 200 ARLSELMEKESIEVEDKAIRYVAKAADGSMRDALSLLDQCIAFYLGQKLTYDNVLDVLGA 259
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
V ++ L + SD + ++ E++ +P Q ++ + +++ K
Sbjct: 260 VDNEIFSRLTRRVIDSDVTTSLNILDEIIMQGREPGQFVNDFIWYLRNLMLIKTSDDDEI 319
Query: 588 --LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ D S R + ++ + R ++ILSE Q++ S + + +AL++L+
Sbjct: 320 MEVIDASAERIEALKEEAQMVNVDVIMRYIRILSELSGQIKYSSQKRVLIEIALIKLAKP 379
Query: 646 ESSLDL 651
D+
Sbjct: 380 AMERDV 385
>gi|149279562|ref|ZP_01885691.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39]
gi|149229598|gb|EDM34988.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39]
Length = 624
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 191/361 (52%), Gaps = 7/361 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ + +L +AI + +LF GPRG GKT+ +RI A +NC +
Sbjct: 8 ARKYRPATFETVVGQQHITGTLKNAIRNNQLAQAFLFCGPRGVGKTTCARILAKTINCTN 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L +Q+ CG C C F +G S + E+D+ N D + SL+ +PP + ++KI+II
Sbjct: 68 LTAEQEACGTCESCISFQTGHSFNFHELDAASNNSVDDIRSLIDQVRIPPQAGKYKIYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE + +F++ T E K+ + LSR Q + F +I+ DI+S
Sbjct: 128 DEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVDDISS 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L RI + E I+ + L IA K++G +RDA + DQ+ S K +T + + I+
Sbjct: 188 HLNRIAIRENISVEADGLHIIAQKADGGLRDALSMFDQIVSYTNKNLTYKSVIDNLNILD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D L ++D SN+++ E++ + D I+ LA+ + ++L K L +
Sbjct: 248 YDYYFKLTTFLTAADVSNSLVLFDEILNNGFDGNNFINGLASHLRNLLVAKDPQTTKLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
SE K + + + + + AL + ++ + + SK+Q + +AL+++ S +
Sbjct: 308 VSENIKQKYISQSQQTAVGFILTALNLANQCDLSYKNSKNQRLQVELALIKMCHIPSVIQ 367
Query: 651 L 651
L
Sbjct: 368 L 368
>gi|422848841|ref|ZP_16895517.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK115]
gi|325689862|gb|EGD31866.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK115]
Length = 556
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E INF+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|449975717|ref|ZP_21815933.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11VS1]
gi|449176426|gb|EMB78772.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
11VS1]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 SHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|239623040|ref|ZP_04666071.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522407|gb|EEQ62273.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 549
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/366 (32%), Positives = 187/366 (51%), Gaps = 12/366 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++ GQ+ +V++L + I+ + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPVSFEDVKGQDPIVQTLKNQITSERIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C SG S +V E+D+ N + + + PP R++++I
Sbjct: 65 EHPVDGSPCNECPTCKAIQSGSSMNVVEIDAASNNGVENIRDIRDQVQYPPTEGRYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRISLETIG 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
RLR + E I + AL +IA ++GS+RD LLDQ GK +T A E++G
Sbjct: 185 DRLRELTQAEHIEVEDRALMYIAKAADGSLRDGLSLLDQCVAFHFGKVLTYDNALEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSN-------TVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
V + + T + VI+ REL + D + + L LI +
Sbjct: 245 VDSSVFSQMFGAVVEGRTKDCICTLEEIVIQGRELGQFVNDFIWYMRNLL-LIQSADDAE 303
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS--S 644
L D SE + +AD L R +++ SE QLR + + + VAL++L+ S
Sbjct: 304 GLLDMSEENLKQLREDGKKADGPTLMRYIRVFSELSNQLRYASQKRVLVEVALIKLTRPS 363
Query: 645 SESSLD 650
E +LD
Sbjct: 364 MEPNLD 369
>gi|450097556|ref|ZP_21857510.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF1]
gi|449222520|gb|EMC22244.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SF1]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|450036137|ref|ZP_21835354.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M21]
gi|449194523|gb|EMB95877.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M21]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 SHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|449902432|ref|ZP_21791581.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M230]
gi|450046282|ref|ZP_21838839.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N34]
gi|450127760|ref|ZP_21868736.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U2A]
gi|450144614|ref|ZP_21874135.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
1ID3]
gi|450170156|ref|ZP_21883394.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM4]
gi|450175162|ref|ZP_21884990.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM1]
gi|449150457|gb|EMB54222.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
1ID3]
gi|449199058|gb|EMC00142.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N34]
gi|449230380|gb|EMC29642.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U2A]
gi|449246250|gb|EMC44561.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM4]
gi|449247235|gb|EMC45520.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM1]
gi|449262830|gb|EMC60271.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M230]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|323342245|ref|ZP_08082477.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463357|gb|EFY08551.1| DNA polymerase III, gamma/tau subunit DnaX [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 600
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 211/375 (56%), Gaps = 33/375 (8%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP DE+VGQ VV L ++I++ ++ YLF GPRGTGKTS +++FA A+NC
Sbjct: 5 SLYRKYRPAHLDEVVGQEHVVNVLKNSITKNKISHAYLFCGPRGTGKTSIAKLFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ DQ CG C C + G D+ E+D+ N D + L++ P ++K++I
Sbjct: 65 EN-PDQVICGTCDNCLAVADGTHPDLIEIDAASNNGVDEIRGLIEKVKYTPILGKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E+ K+ + +SR Q+Y F +I + DIA
Sbjct: 124 IDEVHMLSQGAFNALLKTLEEPPSHVVFILATTEIHKVLPTIISRCQRYDFNRIGEVDIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL + E + +Q IA+ S G +R+A +L+Q +L +IT++ Y+ GI+
Sbjct: 184 KRLDYVLNNENVEAEQGVSKLIASLSGGGLRNALTILEQAIVLADDQITVNQIYDTNGII 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGKCLED 590
+D + ++L D IR ++ M + ++ + ++++ + L+MD+++G L+D
Sbjct: 244 TDQDKINLFD----------SIREQQ-MEALVNQIAMMNEKSVNIDRLMMDLVSG--LKD 290
Query: 591 C-------SEARKN----FFGKHTSEADM--QKLSRALKILSETEKQLRMSKHQTTWLTV 637
S+A N F + +E ++L K+LS T+K ++ S++Q+T+ V
Sbjct: 291 SIIYSHTKSDALVNENSLMFIHYLAETLQVHERLKVIEKLLSYTDK-MKFSQNQSTYFEV 349
Query: 638 ALLQLSSSESSLDLN 652
A++ + +S S+ ++N
Sbjct: 350 AMVDVFNSFSNKNVN 364
>gi|449972091|ref|ZP_21814636.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
2VS1]
gi|450030987|ref|ZP_21833503.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
G123]
gi|450056380|ref|ZP_21841997.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML4]
gi|450067447|ref|ZP_21846634.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML9]
gi|449171145|gb|EMB73820.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
2VS1]
gi|449192039|gb|EMB93479.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
G123]
gi|449206750|gb|EMC07443.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML4]
gi|449208006|gb|EMC08642.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NLML9]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 SHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|387131745|ref|YP_006297718.1| DNA polymerase III, subunit gamma and tau [Prevotella intermedia
17]
gi|386374593|gb|AFJ07469.1| DNA polymerase III, subunit gamma and tau [Prevotella intermedia
17]
Length = 594
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 193/353 (54%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F +VGQ + +L++A+ G + YLF GPRG GKT+ +RIFA +NC
Sbjct: 8 ARKYRPMSFSTVVGQQALTTTLMNAVKNGKLAHAYLFCGPRGVGKTTCARIFAKTINCEH 67
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+Q + C C C F+ GRS ++ E+D+ N + + +LM+ +PP R+K+FII
Sbjct: 68 PTEQGEACNECESCQSFNEGRSYNIFELDAASNNSVENIKTLMEQTRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ I S
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVSGIIS 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ + +E I +++ AL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKAVAEKEGIAYEEQALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ +++DL++ + ++ ++ D L++ LA+ + ++L K L +
Sbjct: 248 TENYFNIVDLSVENKVPEIMVLLNNVINKGFDAGNLVNGLASHVRNVLMAKDPQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE ++ + + ++ Q L +AL++++ + + R S ++ + + L+Q++
Sbjct: 308 TSEQQRQRYQEQAAKCPTQFLYKALEVMNRCDVEYRQSSNKRLLVELTLIQVA 360
>gi|261417516|ref|YP_003251198.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. Y412MC61]
gi|297528392|ref|YP_003669667.1| DNA polymerase III subunits gamma/tau [Geobacillus sp. C56-T3]
gi|319765174|ref|YP_004130675.1| DNA polymerase III subunits gamma and tau [Geobacillus sp.
Y412MC52]
gi|448236326|ref|YP_007400384.1| DNA polymerase 3 subunit gamma/tau [Geobacillus sp. GHH01]
gi|261373973|gb|ACX76716.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
Y412MC61]
gi|297251644|gb|ADI25090.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp. C56-T3]
gi|317110040|gb|ADU92532.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
Y412MC52]
gi|445205168|gb|AGE20633.1| DNA polymerase 3 subunit gamma/tau [Geobacillus sp. GHH01]
Length = 559
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 185/353 (52%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L SA+ + ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ NR D + + + P S+R+K++I
Sbjct: 65 EQAPAAEPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSARYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQRFDFRRIPLPAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SRL+ + + + AL IA ++G +RDA LLDQ +S K+ L + G
Sbjct: 185 SRLKYVASAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSDGKLRLDDVLAMTGAA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S L ++ DT+ + + +M DP +L+ L D+L K A
Sbjct: 245 SFAALSSFIEAIHRKDTAAVLQQLETMMAQGKDPHRLVEDLILYYRDLLLYKTAPYVEGA 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ F + + L A+++L++++++++ + H L VAL++L
Sbjct: 305 IQIAVVDEAFTSLSEMIPVSNLYEAIELLNKSQQEMKWTNHPRLLLEVALVKL 357
>gi|450050343|ref|ZP_21840211.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NFSM1]
gi|449202696|gb|EMC03593.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NFSM1]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 149/253 (58%), Gaps = 6/253 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 LYRKYRSQIFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D +PC C C ++G DV E+D+ N D + + + P + +K++II
Sbjct: 65 HQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYII 124
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 125 DEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIKE 184
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGIV 534
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G +
Sbjct: 185 HLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGSI 244
Query: 535 S----DDELLDLL 543
S D + DLL
Sbjct: 245 SLRALDQYVADLL 257
>gi|330833256|ref|YP_004402081.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3]
gi|386584658|ref|YP_006081061.1| DNA polymerase III subunit gamma/tau [Streptococcus suis D9]
gi|329307479|gb|AEB81895.1| DNA polymerase III subunit gamma/tau [Streptococcus suis ST3]
gi|353736804|gb|AER17813.1| DNA polymerase III subunit gamma/tau [Streptococcus suis D9]
Length = 555
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L AI +G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTDIQ 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
L I +E + FD+ AL IA ++ G +RDA +LDQ LSL +++TL +A E+ G
Sbjct: 184 EHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEITGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|450114951|ref|ZP_21863642.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
ST1]
gi|449228632|gb|EMC27992.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
ST1]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|450086676|ref|ZP_21853809.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NV1996]
gi|449219117|gb|EMC19095.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NV1996]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|430756726|ref|YP_007211238.1| DNA polymerase III subunit gamma/tau [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|430021246|gb|AGA21852.1| DNA polymerase III subunit gamma/tau [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 563
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 197/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +LD IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + + Q L + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ DL + + ++
Sbjct: 365 AADLPEVDMLMK 376
>gi|449910063|ref|ZP_21794526.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
OMZ175]
gi|449260475|gb|EMC57975.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
OMZ175]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|450071148|ref|ZP_21848003.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M2A]
gi|449212773|gb|EMC13125.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
M2A]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|430851107|ref|ZP_19468862.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1185]
gi|430534511|gb|ELA74955.1| DNA polymerase III, subunit gamma and tau [Enterococcus faecium
E1185]
Length = 581
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 194/359 (54%), Gaps = 17/359 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNSKDGEPCNECEMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKAAYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKESVIFILATTEPHKIPATIISRTQRFDFKRINTADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I E I+++ AAL+ IA + G +RDA +LDQ +S ITL A ++ G +
Sbjct: 185 EHLEFILKESTISYEPAALNVIARSAEGGMRDALSILDQAISFSEGTITLDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSS----------DTSNTVIRARELMRSKIDPMQLISQLANLIMDILA 584
+D +++D LS+ +T N ++ A + R ++ M + +L+M A
Sbjct: 245 TD----EMMDSYLSACVKKEVPEALETLNQILAAGKESRRFLEDM--LQYCRDLLMYQQA 298
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+E+ S ++ F + +L +KILS+T+ ++ + +L VA ++L+
Sbjct: 299 PNLVEEQSSTIRSTFTELAQTVSADQLFSMIKILSDTQNEIHFTNSAAIYLEVATVKLA 357
>gi|290580054|ref|YP_003484446.1| DNA polymerase III subunit gamma/tau [Streptococcus mutans NN2025]
gi|254996953|dbj|BAH87554.1| DNA polymerase III gamma/tau subunit [Streptococcus mutans NN2025]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|449935795|ref|ZP_21803610.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
2ST1]
gi|450154471|ref|ZP_21877759.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans 21]
gi|449166145|gb|EMB69100.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
2ST1]
gi|449237843|gb|EMC36647.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans 21]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|404491942|ref|YP_006716048.1| DNA polymerase III subunits gamma and tau [Pelobacter carbinolicus
DSM 2380]
gi|77544072|gb|ABA87634.1| DNA polymerase III, gamma and tau subunits [Pelobacter carbinolicus
DSM 2380]
Length = 582
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/362 (33%), Positives = 190/362 (52%), Gaps = 7/362 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP FD+LVGQ V ++L +AI G V +LF G RG GKTSA+RIFA ALNC
Sbjct: 6 LARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVHHAFLFTGARGVGKTSAARIFAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+PC +C+ C S+G+ DV E+D D + L ++ P SR+KIFII
Sbjct: 66 QGLSPQPCNVCQSCREISAGQGLDVFEIDGASNTGVDDIRELRENIRYLPSRSRYKIFII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE +H F+ T E K+P + LSR Q++ F KI I +
Sbjct: 126 DEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSRCQRFDFRKIPLPLIVA 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RL+ I E I+ + +L +A + GS+RDA+ DQ ++ G + L+G+V
Sbjct: 186 RLKEIAAAEGISISERSLGLVARRGEGSMRDAQSTFDQVIAFCGDAVGEDDVQGLLGMVD 245
Query: 536 DDELLDLLDLALSSDTSNT---VIRARELMRS-KIDPMQLISQLANLIM--DILAGKCLE 589
L+D L+ L D+ V R EL S + +L+ L +L++ + + L
Sbjct: 246 RRLLVDTLESLLGHDSRRLLHCVCRVDELGHSFRQFCRELVETLRSLVVLKVVPEPEALL 305
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
D + + ++ +++ L RA+ +L TE +L S L +ALL+L+ S
Sbjct: 306 DATPDELEELRRLSATVELEDLERAVTVLVRTEAELAGSSFPRLALEMALLRLAHLPSGR 365
Query: 650 DL 651
D+
Sbjct: 366 DV 367
>gi|260589048|ref|ZP_05854961.1| DNA polymerase III, gamma and tau subunit [Blautia hansenii DSM
20583]
gi|260540827|gb|EEX21396.1| DNA polymerase III, gamma and tau subunit [Blautia hansenii DSM
20583]
Length = 538
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 192/368 (52%), Gaps = 14/368 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ +V +L + I + YLF G RGTGKT+ ++I A A+NC
Sbjct: 5 ALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKILARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C+ C + G S +V E+D+ N D + + + P + ++K++I
Sbjct: 65 EHPVDGSPCNTCKTCRAINEGTSMNVIEIDAASNNGVDNIREIREEVAYRPTTGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRITADTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+RL+ + +E + ++ A+ +IA ++GS+RDA LLDQ LG+K+T E +G
Sbjct: 185 ARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGEKLTYEKVLENLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNT-------VIRARELMRSKIDPMQLISQLANLIMDILAGK 586
V +L L DT+ T +I+ REL + D I L NL++ +
Sbjct: 245 VDTQVFSRMLRQILQQDTAGTIKTLDEIIIQGRELGQFVTD---FIWYLRNLLLISTSEH 301
Query: 587 CLEDCSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
E + +N + +S D + L R ++I SE Q++ + + + +AL++L
Sbjct: 302 PEEAVDASAENLERMKEESSMVDAETLMRYIRIFSELSNQIKYASQKRVLVEIALIKLCQ 361
Query: 645 SESSLDLN 652
++L+
Sbjct: 362 PVMEMNLD 369
>gi|171779618|ref|ZP_02920574.1| hypothetical protein STRINF_01455 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281720|gb|EDT47154.1| DNA polymerase III, subunit gamma and tau [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 562
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 164/293 (55%), Gaps = 2/293 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ V+ +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQVNGEPCNHCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKK-ITLSLAYELIGI 533
L I +E I +++ AL IA + G +RDA +LDQ LSL ++LS+A E+ G
Sbjct: 184 DHLADILGKEGITYEEDALTLIARCAEGGMRDALSILDQALSLTSDNHVSLSIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
+S L D + L++ TS + + S + + L N + D+L +
Sbjct: 244 ISMTALDDFVANVLANQTSQALTNLETIFDSGKSMSRFATDLLNYLRDLLVAQ 296
>gi|397650185|ref|YP_006490712.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
GS-5]
gi|449984526|ref|ZP_21819101.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NFSM2]
gi|449994656|ref|ZP_21822649.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans A9]
gi|392603754|gb|AFM81918.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
GS-5]
gi|449180105|gb|EMB82281.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NFSM2]
gi|449185162|gb|EMB87064.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans A9]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|331003026|ref|ZP_08326538.1| hypothetical protein HMPREF0491_01400 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413070|gb|EGG92445.1| hypothetical protein HMPREF0491_01400 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 516
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 193/366 (52%), Gaps = 10/366 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ FDE++GQ + R+L + + G ++ YLF G RGTGKTS ++I A ALNC
Sbjct: 5 ALYRKFRPSNFDEVIGQEAITRTLKNQLKTGRISHAYLFCGTRGTGKTSIAKIMARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C S S +V E+D+ N D + + + PP ++K+FI
Sbjct: 65 EHPTDAGPCNECPTCKSILSETSINVVEIDAASNNGVDNIRDIKEQVQYPPTFGKYKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPVTVLSRCQRYDFKRIGIDTIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
RL+ +C E ++ + AL +IA ++G++RDA LLD+ +S L +KI+ +++G
Sbjct: 185 QRLKTLCNSEGVDIEDRALYYIAKTADGAMRDALSLLDECISFLQNEKISYDAVLDILGA 244
Query: 534 VSDDELLDLLDLALSSDT-------SNTVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
+LLD LS +T +N++I +E+ + D + + + ++ I
Sbjct: 245 SDISVFNELLDGVLSGNTIEVLNLLNNSIIEGKEIGQFVTDFLWYLRNIL-ILKSIQNDS 303
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
L D SE + ++ + L R +K LSE +L+ + + + ++L + E
Sbjct: 304 SLVDMSEQNLQNLKEISNTVSKETLMRYIKNLSELSNKLKSATQKRVVAELEFIRLMTPE 363
Query: 647 SSLDLN 652
+L+
Sbjct: 364 MEENLD 369
>gi|261886243|ref|ZP_06010282.1| DNA polymerase III subunits gamma and tau [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 537
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 186/360 (51%), Gaps = 19/360 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+ K+RP FDEL+GQ++V SL A++ G + YLF G RG+GKTS++RIFA AL C
Sbjct: 3 ALALKYRPKSFDELIGQDIVANSLSHALNSGRIGHAYLFSGLRGSGKTSSARIFAKALLC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC +C C + + GR D+ E+D+ + D + L++ P S+RFKIFI
Sbjct: 63 EQGIGSHPCEVCANCVMANEGRHLDIIEMDAASHRKIDDIRELIEHTKYSPSSARFKIFI 122
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE ++V F++ T + KLP + LSR+Q + F I DI
Sbjct: 123 IDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKPISKHDIL 182
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
L I +E I F+ AL+ ++ +GS+RD LLDQ + + +T +++G++
Sbjct: 183 KHLEFIMNKEGIKFEPKALEILSRSGSGSLRDTLTLLDQAIIFSHEFVTQKAVADMLGLL 242
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++ ++L + S D + + +EL S A LI+D L
Sbjct: 243 DPSKIEEVLSIVASRDRNALLNLLKELSGSD----------AELIIDELIINL------- 285
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDS 654
K+ F SE + R +ILSE + L L +AL + + + D+ND+
Sbjct: 286 -KDKFINQNSEFSILIFERFFRILSEAKSMLGSGSDSEFTLYIALFMMLEAFNLTDINDA 344
>gi|450001490|ref|ZP_21825672.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N29]
gi|450005326|ref|ZP_21826627.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NMT4863]
gi|449184455|gb|EMB86399.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
N29]
gi|449188744|gb|EMB90441.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
NMT4863]
Length = 558
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRAIYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVFV+ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|24379964|ref|NP_721919.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
UA159]
gi|449865360|ref|ZP_21778950.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U2B]
gi|449871718|ref|ZP_21781219.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
8ID3]
gi|24377948|gb|AAN59225.1|AE014989_6 DNA polymerase III, gamma/tau subunit [Streptococcus mutans UA159]
gi|449155056|gb|EMB58588.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
8ID3]
gi|449264347|gb|EMC61692.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U2B]
Length = 558
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|169825651|ref|YP_001695809.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
C3-41]
gi|168990139|gb|ACA37679.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
C3-41]
Length = 578
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 176/340 (51%), Gaps = 10/340 (2%)
Query: 311 GQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370
GQ V R+L +A+ T YLF GPRGTGKTS ++IFA ALNC ++PC C C
Sbjct: 3 GQAHVKRTLQNALLANKTTHAYLFSGPRGTGKTSTAKIFAKALNCEHAPSEEPCNECATC 62
Query: 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV 430
+ G DV E D+ +R + + +++ P SSR+K++IIDE +L + +
Sbjct: 63 LSITDGSHPDVIEFDAASNSRVEEIRDIIEKVRFAPASSRYKVYIIDEVHMLSTSAFNAL 122
Query: 431 LNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFD 490
L +LE H VF++ T E KLP + +SR Q++ F ++ DI R++ + + + ++
Sbjct: 123 LKTLEEPPPHAVFILATTEPHKLPATIISRCQRFDFKRLSTNDIIERMKVVLEDIELPYE 182
Query: 491 QAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDELLDLLDLALSS 549
+ L IA + G +RDA LLDQ +S G+K+ L + G +S + DL + +
Sbjct: 183 EQGLKVIAQSAAGGMRDALSLLDQVVSFSGEKLKLEDTLLVTGSISQEVFYDLANALKAK 242
Query: 550 DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE-------ARKNFFGKH 602
D + + +L+ DP++L L D+L + ED +E + H
Sbjct: 243 DVAQMLALLEQLITDGKDPLRLSEDLITFFRDLLLLQTSEDLAELLELVSPEERVLSLAH 302
Query: 603 TSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
DM L + IL++T++++R S H +L ALL++
Sbjct: 303 EFAPDM--LYGYIDILAKTQQEMRFSHHTKIYLETALLKM 340
>gi|422876616|ref|ZP_16923086.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1056]
gi|332361424|gb|EGJ39228.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1056]
Length = 556
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E INF+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|450111507|ref|ZP_21862734.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM6]
gi|449223754|gb|EMC23425.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SM6]
Length = 558
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 SHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|450010815|ref|ZP_21828823.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
A19]
gi|450023928|ref|ZP_21830945.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U138]
gi|449190014|gb|EMB91627.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
A19]
gi|449192735|gb|EMB94143.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
U138]
Length = 558
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|449979722|ref|ZP_21816869.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
5SM3]
gi|449177648|gb|EMB79940.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
5SM3]
Length = 558
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 SHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILEKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|375090885|ref|ZP_09737192.1| DNA polymerase III, subunit gamma and tau [Helcococcus kunzii ATCC
51366]
gi|374565021|gb|EHR36299.1| DNA polymerase III, subunit gamma and tau [Helcococcus kunzii ATCC
51366]
Length = 553
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 181/334 (54%), Gaps = 6/334 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F E+ GQ+ +V L + I ++ Y+F G RGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRPQTFSEVFGQDNIVNILKNQIKHNQISHAYIFSGTRGTGKTSTAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D PC C C S + D+ E+D+ D + L PP + ++K++I
Sbjct: 64 LNPIDGNPCNECANCRSIISEENMDIIEMDAASNRGIDDIRQLRDQVIYPPSTLKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L +E +H+VF++ T EL+K+P + LSR+Q++ F + + DI
Sbjct: 124 IDEAHMITREAFNALLKIMEEPPKHLVFILATTELEKIPDTILSRTQRFEFKSLSEEDIQ 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
+++R I +E I+ + A++ IA+ ++G++RDA +LDQ+ +GK+ IT S +L+GI
Sbjct: 184 NQIRFILDKENISMEDRAIEIIASVASGAMRDALSILDQVISIGKESITTSEVTDLLGIF 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
SD+ ++ + D + + DP I + D++ K
Sbjct: 244 SDEVKINYARAIFNKDIKLLIETIDNELDKGKDPHNFIKDIITFFKDLIYIKV-----GI 298
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMS 628
+K+ F + E + +L + +L E E+ ++ S
Sbjct: 299 KKDVFNGISDENSLDQLINTVDLLLEYEELMKKS 332
>gi|302380881|ref|ZP_07269343.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
ACS-171-V-Col3]
gi|302311259|gb|EFK93278.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
ACS-171-V-Col3]
Length = 537
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 198/353 (56%), Gaps = 8/353 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ +K+RP+ FD++ GQ + L + I ++ Y+F G RGTGKTS ++IFA A+NC
Sbjct: 3 AIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAINC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L++ PC C C + D+ E+D+ R D + L PP ++K++I
Sbjct: 63 LDLQNGNPCNKCENCLSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKLKYKVYI 122
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L +E +H+VF++ T E+DK+P++ LSR Q+Y F I DI+
Sbjct: 123 IDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSKDIS 182
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
++ I + + D+ A++ IA K++G++RDA +LDQ LS+ + IT +++GIV
Sbjct: 183 DNIKYILNDLSRKMDEDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDILGIV 242
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ-LISQLANLIMDILAGK-CLEDCS 592
+ + L++ + D + + + +K P++ ++ +L N ++L K LE
Sbjct: 243 DNKGIFKLVNSIIKKDATEVLGNLYTISHNK--PVENVMDELLNHFRNLLLSKNGLEKIR 300
Query: 593 EARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + +++++ +++ ++ I+ E +K+L+ + +Q L + +++L
Sbjct: 301 QNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|260887501|ref|ZP_05898764.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena
ATCC 35185]
gi|260862788|gb|EEX77288.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena
ATCC 35185]
Length = 691
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ V R+L AIS G + YLF GPRGTGKTS ++I A +LNC
Sbjct: 32 ALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNC 91
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PCG+C+ C + G + DV E+D+ D + L + P R+K++I
Sbjct: 92 EKGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRYKVYI 151
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HVVF++ T E K+P + SR Q++ F +I +I
Sbjct: 152 IDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITVEEIE 211
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+RL + E I ++ AL IA +++G +RDA LLDQ SL G +T + E +G++
Sbjct: 212 ARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEENLGLI 271
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDIL---------- 583
+ + L A+ V+ EL+ DPMQL+++L + ++
Sbjct: 272 GHEPIYRLTK-AIGERAKGEVLETIAELLALGKDPMQLLAELTIHLRSLMIYEAAGALAA 330
Query: 584 ------AGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
G LE+ +K F T M ++R L E +LR + L V
Sbjct: 331 LNLADDTGAALEE----QKALF---TQAQIMAMIAR----LHEAMAELRWTPQPRITLEV 379
Query: 638 ALLQL 642
ALL L
Sbjct: 380 ALLSL 384
>gi|423680411|ref|ZP_17655250.1| DNA polymerase III subunits gamma/tau [Bacillus licheniformis
WX-02]
gi|383441517|gb|EID49226.1| DNA polymerase III subunits gamma/tau [Bacillus licheniformis
WX-02]
Length = 566
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 185/357 (51%), Gaps = 14/357 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA+++FA A+NC
Sbjct: 5 ALYRVFRPQLFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKLFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 ERAPVSEPCNECSACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+++I E ALD IA+ ++G +RDA LLDQ +S G+++T+ A + G V
Sbjct: 185 GRMKKIVEAEQFKVQDGALDIIASAADGGMRDALSLLDQAVSFSGEELTVDDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S + L + S + EL++ DP +LI + D+L + D
Sbjct: 245 SQHYIGKLASTLHEKNVSGALETLNELLQQGKDPAKLIEDMIFYFRDMLLYQTAPDL--- 301
Query: 595 RKNFFGKHTSEADMQKLSRALK---------ILSETEKQLRMSKHQTTWLTVALLQL 642
+ K + + Q LSR + IL+++ ++++ + H + VA+++L
Sbjct: 302 -EGVLEKVKVDEEFQTLSRQIPASDLYEMIDILNKSHQEMKWTNHPRIFFEVAVVKL 357
>gi|407980447|ref|ZP_11161234.1| DNA polymerase III subunits gamma and tau [Bacillus sp. HYC-10]
gi|407412804|gb|EKF34565.1| DNA polymerase III subunits gamma and tau [Bacillus sp. HYC-10]
Length = 570
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 187/356 (52%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EKSPVSEPCNECDACRGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTKDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E++N + +L+ IA+ ++G +RDA LLDQ +S G+++T+ A + G V
Sbjct: 185 GRMEKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S + L + + + + EL++ D +LI + D+L K D
Sbjct: 245 SQHFISQLAEAIFEQNIAIALDTLNELLQQGKDAAKLIEDMIFYFRDMLLYKTAPDLEGV 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ F + Q L +++L+++ ++++ + H + VA+++L S
Sbjct: 305 LEKVKVDEKFVSLSERVTPQFLYETIEVLNKSHQEMKWTNHPRIFFEVAVVKLCQS 360
>gi|417926293|ref|ZP_12569697.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
SY403409CC001050417]
gi|341589661|gb|EGS32928.1| DNA polymerase III, subunit gamma and tau [Finegoldia magna
SY403409CC001050417]
Length = 537
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 198/353 (56%), Gaps = 8/353 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ +K+RP+ FD++ GQ + L + I ++ Y+F G RGTGKTS ++IFA A+NC
Sbjct: 3 AIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAINC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L++ PC C C + D+ E+D+ R D + L PP ++K++I
Sbjct: 63 LDLQNGNPCNKCENCLSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKLKYKVYI 122
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L +E +H+VF++ T E+DK+P++ LSR Q+Y F I DI+
Sbjct: 123 IDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSKDIS 182
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
++ I + + D+ A++ IA K++G++RDA +LDQ LS+ + IT +++GIV
Sbjct: 183 DNIKYILNDLSRKMDEDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDILGIV 242
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ-LISQLANLIMDILAGK-CLEDCS 592
+ + L++ + D + + + +K P++ ++ +L N ++L K LE
Sbjct: 243 DNKGIFKLVNSIIKKDATEVLGNLYTISHNK--PVENVMDELLNHFRNLLLSKNGLEKIR 300
Query: 593 EARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + +++++ +++ ++ I+ E +K+L+ + +Q L + +++L
Sbjct: 301 QNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|428314446|ref|YP_007125422.1| DNA polymerase III subunits gamma and tau [Microcoleus sp. PCC
7113]
gi|428256058|gb|AFZ22016.1| DNA polymerase III, subunit gamma/tau [Microcoleus sp. PCC 7113]
Length = 519
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 196/358 (54%), Gaps = 14/358 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L QK+RP F +LVGQ+ + +L +AI + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHQKYRPQTFAQLVGQDAIATTLTNAIRLQRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLEDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + PCG C C +S S DV E+D+ D + +L++SA P R+K+F
Sbjct: 66 STDQPTVNPCGECEVCRAIASSSSLDVIEIDAASNTGVDNIRTLIESAQFTPMMCRYKVF 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDE +L + +L +LE VVF++ T ++L + +SR+Q++ F +I +
Sbjct: 126 LIDEAHMLSTQALNALLKTLEEPPSRVVFILATTNAERLLPTIISRTQRFDFRRIPLNAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L+ I E+I+ AL+ +A ++G +RDA+ LLDQLSLL K+IT +EL+G V
Sbjct: 186 VQHLKAIAELESIDITPQALNLVAQIASGGLRDAQSLLDQLSLLPKQITPETVWELVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN----LIMDILAGKCLED 590
S+ + + L++ D + + R L+ + I+P+ ++ L + L++ + + L+
Sbjct: 246 SESDSIALIEALTLKDFTALLCVTRRLVDAGIEPLTILQTLTSSCRELLIALTSPTRLDL 305
Query: 591 CSEARKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + +++ +H D+ L L+ L +QL ++ WL LL +S
Sbjct: 306 VTVSPQSWEKLCELAQH---WDITALQHTLQQLQVGSRQLTNTQVPVLWLEAVLLSVS 360
>gi|170760406|ref|YP_001785357.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A3
str. Loch Maree]
gi|169407395|gb|ACA55806.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A3
str. Loch Maree]
Length = 541
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ + +L + + + YLF G RGTGKTS ++I + A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C +SG DV E+D+ + + + ++++ PP + K++I
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKNKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR Q++ F +I++ +I
Sbjct: 125 MDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR I E+ I D +L+ IA S+G++RDA +LDQ+ G K+ +++G+V
Sbjct: 185 ERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+++ LL + + + D ++ +++ S D I + + +IL K +
Sbjct: 245 TNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNEI 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + + + ++++ R +KIL E E+Q + K +L +A+L++ E
Sbjct: 305 LDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKMCKIE 362
>gi|118475756|ref|YP_892561.1| DNA polymerase III subunits gamma and tau [Campylobacter fetus
subsp. fetus 82-40]
gi|118414982|gb|ABK83402.1| DNA polymerase III gamma/tau subunit [Campylobacter fetus subsp.
fetus 82-40]
Length = 529
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 186/360 (51%), Gaps = 19/360 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+ K+RP FDEL+GQ++V SL A++ G + YLF G RG+GKTS++RIFA AL C
Sbjct: 3 ALALKYRPKSFDELIGQDIVANSLSHALNSGRIGHAYLFSGLRGSGKTSSARIFAKALLC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC +C C + + GR D+ E+D+ + D + L++ P S+RFKIFI
Sbjct: 63 EQGIGSHPCEVCANCVMANEGRHLDIIEMDAASHRKIDDIRELIEHTKYSPSSARFKIFI 122
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE ++V F++ T + KLP + LSR+Q + F I DI
Sbjct: 123 IDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKPISKHDIL 182
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
L I +E I F+ AL+ ++ +GS+RD LLDQ + + +T +++G++
Sbjct: 183 KHLEFIMNKEGIKFEPKALEILSRSGSGSLRDTLTLLDQAIIFSHEFVTQKAVADMLGLL 242
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++ ++L + S D + + +EL S A LI+D L
Sbjct: 243 DPSKIEEVLSIVASRDRNALLNLLKELSGSD----------AELIIDELIINL------- 285
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDS 654
K+ F SE + R +ILSE + L L +AL + + + D+ND+
Sbjct: 286 -KDKFINQNSEFSILIFERFFRILSEAKSMLGSGSDSEFTLYIALFMMLEAFNLTDINDA 344
>gi|148378038|ref|YP_001252579.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
str. ATCC 3502]
gi|153932975|ref|YP_001382437.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
str. ATCC 19397]
gi|153935315|ref|YP_001385990.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
str. Hall]
gi|421837987|ref|ZP_16272005.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001627]
gi|148287522|emb|CAL81584.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum A str.
ATCC 3502]
gi|152929019|gb|ABS34519.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A
str. ATCC 19397]
gi|152931229|gb|ABS36728.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A
str. Hall]
gi|409739731|gb|EKN40308.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001627]
Length = 541
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ + +L + + + YLF G RGTGKTS ++I + A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C +SG DV E+D+ + + + ++++ PP + K++I
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKNKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR Q++ F +I++ +I
Sbjct: 125 MDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR I E+ I D +L+ IA S+G++RDA +LDQ+ G K+ +++G+V
Sbjct: 185 ERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+++ LL + + + D ++ +++ S D I + + +IL K +
Sbjct: 245 TNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNEI 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + + + ++++ R +KIL E E+Q + K +L +A+L++ E
Sbjct: 305 LDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKMCKIE 362
>gi|167629255|ref|YP_001679754.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum
Ice1]
gi|167591995|gb|ABZ83743.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum
Ice1]
Length = 606
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 184/361 (50%), Gaps = 13/361 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ELVGQ V R+L +AI+ + YLF GPRGTGKT+ ++I A ALNC
Sbjct: 5 ALYREWRPQSFQELVGQEHVSRTLQNAIAYQRIAHAYLFCGPRGTGKTTTAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G S DV E+D+ D + L + P +K++I
Sbjct: 65 SGHGPVRPCNDCLNCRAINTGASHDVLEIDAASNRGVDEIRELREQVKYAPQEGNYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +V+FV+ T E+ K+P + LSR Q++ F ++ +I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSRCQRFDFRRLGVNEIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL RIC I + L FIA K+ G +RDA +LDQ +S G +I ++G V
Sbjct: 185 DRLERICRHHEIAASRETLSFIARKAEGGMRDALGILDQCVSYAGNEIDSGDVTAILGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN-----LIMDILAGKC-- 587
+D+ L D+ S+ +++ +L+ + L L LI+ + G
Sbjct: 245 ADEILYDMTQGLAEDRLSDVLMQLNDLINRGKEVRPLTRDLLGHYRDRLILRTVPGAADL 304
Query: 588 --LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ D A+ G S +D+Q + +LS+ E ++ + H L VA ++++
Sbjct: 305 VDMPDDIAAKVKETGHVYSVSDLQA---CIALLSQAENDMKWTTHPRILLEVAFVRIACR 361
Query: 646 E 646
E
Sbjct: 362 E 362
>gi|138893695|ref|YP_001124148.1| DNA polymerase III subunits gamma and tau [Geobacillus
thermodenitrificans NG80-2]
gi|134265208|gb|ABO65403.1| DnaZX [Geobacillus thermodenitrificans NG80-2]
Length = 559
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 184/353 (52%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L SA+ + ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ NR D + + + P S R+K++I
Sbjct: 65 EHAPAAEPCNECPVCLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQRFDFRRIPLSAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SRL+ + + + AL IA ++G +RDA LLDQ +S K+ + + G
Sbjct: 185 SRLKYVANAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSNGKLEVDDVLSMTGAA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S L D + DT+ + + +M DP +L+ L D+L K A
Sbjct: 245 SFAALADFIGAIYRKDTAAVLQQFETMMAQGKDPNRLVEDLILYCRDLLLYKTAPHVEGA 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ F + + L A+++L++++++++ + H L VAL++L
Sbjct: 305 IQIAVVDEAFISLSETIPLSDLYGAIELLNKSQQEMKWTNHPRLLLEVALVRL 357
>gi|403238558|ref|ZP_10917144.1| DNA polymerase III subunits gamma and tau [Bacillus sp. 10403023]
Length = 562
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 181/357 (50%), Gaps = 6/357 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQTFHDVVGQEHITKTLQNALLQEKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C + G DV E+D+ N D + + P R+K++I
Sbjct: 65 EHSPVAEPCNECAACRGITDGSIADVIEIDAASNNGVDEIRDIRDKVKYAPSVVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFRRITTQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I E+ ++ D AL IA + G +RDA LLDQ +S +K+ L + G V
Sbjct: 185 GRMKTIIAEQNVSVDDQALYVIARAAEGGMRDALSLLDQAISFSDEKVKLEDVLVITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S L +++ D + E+M DPM+ I L D+L + E
Sbjct: 245 SQSFLTNIVRAIRDRDVRTALKTLDEMMDHGKDPMRFIEDLIFYYRDMLLYQTAPQLEEV 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ F + ++ + IL++ +++++ + H +L VAL++L+ E
Sbjct: 305 LERVLVDEDFTELAKSISNHEIYETIDILNQAQQEMKWTNHPRIFLEVALVKLTQIE 361
>gi|168181143|ref|ZP_02615807.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
NCTC 2916]
gi|226947244|ref|YP_002802335.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A2
str. Kyoto]
gi|387816259|ref|YP_005676603.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
H04402 065]
gi|182668020|gb|EDT79999.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
NCTC 2916]
gi|226840992|gb|ACO83658.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A2
str. Kyoto]
gi|322804300|emb|CBZ01850.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
H04402 065]
Length = 541
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ + +L + + + YLF G RGTGKTS ++I + A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C +SG DV E+D+ + + + ++++ PP + K++I
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKNKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR Q++ F +I++ +I
Sbjct: 125 MDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR I E+ I D +L+ IA S+G++RDA +LDQ+ G K+ +++G+V
Sbjct: 185 ERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+++ LL + + + D ++ +++ S D I + + +IL K +
Sbjct: 245 TNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNEI 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + + + ++++ R +KIL E E+Q + K +L +A+L++ E
Sbjct: 305 LDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKMCKIE 362
>gi|352516880|ref|YP_004886197.1| DNA polymerase III tau subunit [Tetragenococcus halophilus NBRC
12172]
gi|348600987|dbj|BAK94033.1| DNA polymerase III tau subunit [Tetragenococcus halophilus NBRC
12172]
Length = 584
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 194/358 (54%), Gaps = 5/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD+++GQ + ++L +AI++ ++ YLF GPRGTGKTSA++I A A+NC
Sbjct: 8 ALYRVWRSQRFDDVIGQEAITQTLKNAITQSQISHAYLFTGPRGTGKTSAAKILAKAVNC 67
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N + + + + A P +++K++I
Sbjct: 68 PNSVDGEPCNECEICRSITDGTQEDVIEIDAASNNGVEEIRLIRERANYAPTQAQYKVYI 127
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 128 IDEVHMLSTGAFNALLKTLEEPKKNVIFILATTEPHKIPATIISRTQRFDFKRIDTKDIV 187
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I + ++F+ AL+ IA + G +RDA +LDQ +S ITL A E+ G +
Sbjct: 188 DHLAYILEKNELSFEDEALNVIAQAAEGGMRDALSILDQAISFSDDTITLQDALEVTGSL 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ D + + +T+ + E++ S + +L+ L D+L A K L +
Sbjct: 248 TYDMMDRFILTCKQENTAECLSLLDEMLASGKEARRLLENLLVYCRDLLIYQKAPKLLAE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
++ F + E Q++ + IL++T+ ++R + +L VA ++LS S+
Sbjct: 308 KAQHFTATFKQSAEEISAQQIYSWIHILNQTQNEIRFTTSPRIYLEVATVKLSEGNST 365
>gi|331083246|ref|ZP_08332359.1| hypothetical protein HMPREF0992_01283 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330404327|gb|EGG83872.1| hypothetical protein HMPREF0992_01283 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 538
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 192/368 (52%), Gaps = 14/368 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ +V +L + I + YLF G RGTGKT+ ++I A A+NC
Sbjct: 5 ALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTIAKILARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C+ C + G S +V E+D+ N D + + + P + ++K++I
Sbjct: 65 EHPVDGSPCNTCKTCRAINEGTSMNVIEIDAASNNGVDNIREIREEVAYRPTTGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFRRITADTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+RL+ + +E + ++ A+ +IA ++GS+RDA LLDQ LG+K+T E +G
Sbjct: 185 ARLQELMDKEGNDVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGEKLTYEKVLENLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNT-------VIRARELMRSKIDPMQLISQLANLIMDILAGK 586
V +L L DT+ T +I+ REL + D I L NL++ +
Sbjct: 245 VDTQVFSRMLRQILRQDTAGTIKTLDEIIIQGRELGQFVTD---FIWYLRNLLLISTSEH 301
Query: 587 CLEDCSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
E + +N + +S D + L R ++I SE Q++ + + + +AL++L
Sbjct: 302 PEEAVDASAENLERMKEESSMVDAETLMRYIRIFSELSNQIKYASQKRVLVEIALIKLCQ 361
Query: 645 SESSLDLN 652
++L+
Sbjct: 362 PVMEMNLD 369
>gi|330837881|ref|YP_004412461.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena
ATCC 35185]
gi|329745645|gb|AEB99001.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena
ATCC 35185]
Length = 664
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 185/365 (50%), Gaps = 30/365 (8%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ V R+L AIS G + YLF GPRGTGKTS ++I A +LNC
Sbjct: 5 ALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PCG+C+ C + G + DV E+D+ D + L + P R+K++I
Sbjct: 65 EKGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HVVF++ T E K+P + SR Q++ F +I +I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITVEEIE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+RL + E I ++ AL IA +++G +RDA LLDQ SL G +T + E +G++
Sbjct: 185 ARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEENLGLI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDIL---------- 583
+ + L A+ V+ EL+ DPMQL+++L + ++
Sbjct: 245 GHEPIYRLTK-AIGERAKGEVLETIAELLALGKDPMQLLAELTIHLRSLMIYEAAGALAA 303
Query: 584 ------AGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
G LE+ +K F T M ++R L E +LR + L V
Sbjct: 304 LNLADDTGAALEE----QKALF---TQAQIMAMIAR----LHEAMAELRWTPQPRITLEV 352
Query: 638 ALLQL 642
ALL L
Sbjct: 353 ALLSL 357
>gi|323140458|ref|ZP_08075386.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium
succinatutens YIT 12067]
gi|322415026|gb|EFY05817.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium
succinatutens YIT 12067]
Length = 608
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 140/249 (56%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FD LVGQ V +L +A++ G + YLF GPRGTGKTS +RI A ALNC
Sbjct: 5 ALYRQWRPQDFDALVGQKAVKTTLKNALASGKIAHAYLFSGPRGTGKTSMARILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PCG C C G S DV E+D+ D + L + P SR+K++I
Sbjct: 65 EQGPTAEPCGQCGNCQRIVQGTSLDVIEIDAASNTSVDNIRDLREQVAFTPAESRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H VF++ T + K+P + SR Q++ F ++ +IA
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHAVFILATTDPQKVPATIQSRCQRFEFRRVTVDEIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L + I D AL IA ++ G +RDA LLDQ ++GK++T++ E++GIV
Sbjct: 185 EHLAMVAAGSGIEADADALRLIAIQAEGGMRDALSLLDQCGVMGKRVTVATVREVLGIVG 244
Query: 536 DDELLDLLD 544
+ L +L +
Sbjct: 245 REALHELTE 253
>gi|303235528|ref|ZP_07322137.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens
FB035-09AN]
gi|302484265|gb|EFL47251.1| DNA polymerase III, subunit gamma and tau [Prevotella disiens
FB035-09AN]
Length = 596
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 188/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP F +VGQ + +L++A+ G + YLF GPRG GKT+ +RIFA +NC
Sbjct: 8 ARKYRPMSFASVVGQQALTTTLMNAVKNGKLAHAYLFCGPRGVGKTTCARIFAKTINCEH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + C C C F GRS ++ E+D+ N + + SLM+ +PP ++K+FII
Sbjct: 68 PTAEGEACNECESCKSFDEGRSYNIFELDAASNNSVENIKSLMEQTRIPPQLGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ I +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVQGIIN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+++ +E I +++ AL+ IA K++G +RDA + DQ + + IT E + ++
Sbjct: 188 HLKQVAEKEGIKYEEQALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
++ +++DL+L + ++ + D L+ LA+ + ++L K L +
Sbjct: 248 EENYFNIVDLSLQNKVPEIMVLLNHCINKGFDGGNLVLGLASHVRNVLMAKDAQTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
SE + + + + L +AL+I++ + + R S ++ + + L+Q++
Sbjct: 308 TSEQMRQRYHEQAQKCPTPFLYKALEIMNRCDVEYRQSSNKRLLVEITLIQVA 360
>gi|384049134|ref|YP_005497151.1| DNA polymerase III (Gamma and tau subunits) [Bacillus megaterium
WSH-002]
gi|345446825|gb|AEN91842.1| DNA polymerase III (Gamma and tau subunits) [Bacillus megaterium
WSH-002]
Length = 562
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 192/368 (52%), Gaps = 10/368 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ ++++L +A+ + + YLF GPRGTGKT+A++I A A+NC
Sbjct: 5 ALYRVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C + G DV E+D+ N D + + P + R+K++I
Sbjct: 65 EKAPIAEPCNECATCRGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAPSAVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E K+P + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRCQRFDFKRISPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ + E + + AL IA S G +RDA LLDQ +S +K++L + G V
Sbjct: 185 YRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLLDQAISYSTEKVSLEDVLSITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-- 592
S ++ ++ + + + L+++ DP + + L D+L + E+ +
Sbjct: 245 SQAFIVKIVQAIFNENIVEALDSVESLIKNGKDPARFVEDLIFYYRDVLLYQASEENAYL 304
Query: 593 ---EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS---- 645
A F + +S+ D + + + L++T+++++ S H L VAL++L+ S
Sbjct: 305 LEKAAVNEEFKELSSKMDSAFIYKVIAELNQTQQEMKWSNHPRVLLEVALVKLAQSSTNQ 364
Query: 646 ESSLDLND 653
ES L D
Sbjct: 365 ESDLPYQD 372
>gi|405364951|ref|ZP_11026397.1| DNA polymerase III subunits gamma and tau [Chondromyces apiculatus
DSM 436]
gi|397089516|gb|EJJ20425.1| DNA polymerase III subunits gamma and tau [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 402
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 168/327 (51%), Gaps = 5/327 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP FD++ GQ VVR++ +AI V YLF GPRG GKT+A+R+ A ALNC
Sbjct: 6 LARKWRPQKFDDMTGQEHVVRTVANAIKMDRVAHAYLFCGPRGVGKTTAARLLAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+PCG CR C ++G S DV E+D N + V + ++A P R KI+II
Sbjct: 66 KGPTAQPCGECRACTEIAAGTSVDVAEIDGASNNGVENVREIRENAKYLPQRDRHKIYII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L G + +L +LE HV F+ T E KLP + LSR Q+++F +I +
Sbjct: 126 DEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQRHNFRRIPAARMLQ 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RL+ IC E +L + +S G +RDA LLDQ L+ G + E +G +
Sbjct: 186 RLQEICKAEGAGISDRSLSLVVRQSEGGMRDALSLLDQVLASCGANPSDEEVAEALGAID 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLEDC 591
+ D D + D + R E+ +D +L +LA +L + GK ++
Sbjct: 246 RTLVQDFADALVHKDAKRVLERVEEVFNRGLDLKRLAEELAFQLRHLFVTKTLGKAPDEL 305
Query: 592 SEARKNFFGKHTSEADMQKLSRALKIL 618
+E+ + +A+ +L+R ++
Sbjct: 306 AESEQKALVALAQDAEPAQLTRLFDVV 332
>gi|196251181|ref|ZP_03149856.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
G11MC16]
gi|196209307|gb|EDY04091.1| DNA polymerase III, subunits gamma and tau [Geobacillus sp.
G11MC16]
Length = 559
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 184/353 (52%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F ++VGQ V ++L SA+ + ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ NR D + + + P S R+K++I
Sbjct: 65 EHAPAAEPCNECPVCLGITNGMVPDVLEIDAASNNRVDEIRDIREKVKFAPTSVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQRFDFRRIPLSAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SRL+ + + + AL IA ++G +RDA LLDQ +S K+ + + G
Sbjct: 185 SRLKYVANAQGVEASDEALSAIARAADGGMRDALSLLDQAISFSNGKLEVDDVLSMTGAA 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S L D + DT+ + + +M DP +L+ L D+L K A
Sbjct: 245 SFAALADFIGAIYRKDTAAVLQQFETMMAQGKDPNRLVEDLILYCRDLLLYKTAPHVEGA 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ F + + L A+++L++++++++ + H L VAL++L
Sbjct: 305 IQIAVVDEAFISLSETIPLSDLYGAIELLNKSQQEMKWTNHPRLLLEVALVRL 357
>gi|169824209|ref|YP_001691820.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC
29328]
gi|167831014|dbj|BAG07930.1| DNA polymerase III subunits gamma and tau [Finegoldia magna ATCC
29328]
Length = 537
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 197/353 (55%), Gaps = 8/353 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
++ +K+RP+ FD++ GQ + L + I ++ Y+F G RGTGKTS ++IFA A+NC
Sbjct: 3 AIYRKYRPDTFDKVYGQKHITDILKNQIETKNISHAYIFSGSRGTGKTSCAKIFARAINC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L++ PC C C + D+ E+D+ R D + L PP ++K++I
Sbjct: 63 LDLQNGNPCNKCENCQSSLEESTLDIVEMDAASNRRIDDIRELRDKVIYPPTKLKYKVYI 122
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L +E +H+VF++ T E+DK+P++ LSR Q+Y F I DI+
Sbjct: 123 IDEAHMITNEGFNALLKIMEEPPKHLVFILATTEIDKIPQTILSRCQRYEFKMINSKDIS 182
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
++ I + D A++ IA K++G++RDA +LDQ LS+ + IT +++GIV
Sbjct: 183 DNIKYILNDLNRKMDDDAIELIANKADGAMRDALSILDQVLSIEKENITKQDINDILGIV 242
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ-LISQLANLIMDILAGK-CLEDCS 592
+ + L++ + D ++ + + +K P++ ++ +L N ++L K LE
Sbjct: 243 DNKGIFKLVNSIIKKDATDVLGNLYTISHNK--PVENVMDELLNHFRNLLLSKNGLEKIR 300
Query: 593 EARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + +++++ +++ ++ I+ E +K+L+ + +Q L + +++L
Sbjct: 301 QNNTQYNDDYNAQSELITNRQIVESMSIIIEHQKKLKQADNQKALLEILVMRL 353
>gi|402833160|ref|ZP_10881780.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. CM52]
gi|402281152|gb|EJU29843.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. CM52]
Length = 686
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 182/364 (50%), Gaps = 28/364 (7%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ V R+L AIS G + YLF GPRGTGKTS ++I A +LNC
Sbjct: 39 ALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNC 98
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PCG+C+ C + G + DV E+D+ D + L + P R+K++I
Sbjct: 99 EKGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVKFTPAEGRYKVYI 158
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HVVF++ T E K+P + SR Q++ F +I +I
Sbjct: 159 IDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITVEEIE 218
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+RL + E I ++ AL IA +++G +RDA LLDQ SL G +T + E +G++
Sbjct: 219 ARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEENLGLI 278
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----------- 583
+ + L + EL+ DPMQL+++L + ++
Sbjct: 279 GHEPIYRLTKSIGERAKGEVLETIAELLALGKDPMQLLAELTLHLRSLMIYEAAGALAAL 338
Query: 584 -----AGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVA 638
G LE+ +K F T M ++R L E +LR + L VA
Sbjct: 339 NLADDTGAALEE----QKALF---TQAQIMAMIAR----LHEAMAELRWTPQPRITLEVA 387
Query: 639 LLQL 642
LL L
Sbjct: 388 LLSL 391
>gi|322385297|ref|ZP_08058942.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus
ATCC 51100]
gi|417921787|ref|ZP_12565277.1| DNA polymerase III, subunit gamma and tau [Streptococcus cristatus
ATCC 51100]
gi|321270556|gb|EFX53471.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus cristatus
ATCC 51100]
gi|342833672|gb|EGU67952.1| DNA polymerase III, subunit gamma and tau [Streptococcus cristatus
ATCC 51100]
Length = 554
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSMAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVTA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENTHASELFLENL 312
>gi|188584657|ref|YP_001916202.1| DNA polymerase III subunits gamma and tau [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349344|gb|ACB83614.1| DNA polymerase III, subunits gamma and tau [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 589
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 163/295 (55%), Gaps = 3/295 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP +F +LVGQ VV +L +AIS+ ++ YLF GPRGTGKTS +++FA ALNC
Sbjct: 5 ALYRQWRPKYFRDLVGQEHVVTTLKNAISQSRISHAYLFSGPRGTGKTSVAKVFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PCG C C G D+ E+D+ D + + P +K++I
Sbjct: 65 DHSQDNEPCGQCSRCIEHDRGTFMDILEIDAASNRGIDEIREIRDHVAYSPSEGNYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E + +L +LE +V+F++ T E KLP + LSR Q++ F ++ I
Sbjct: 125 VDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRCQRFDFYRLSTSKIE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL--GKKITLSLAYELIG 532
+L+ + + ++ + +L IA KS+G +RDA LLDQ LS L G+++ + E+ G
Sbjct: 185 KQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSLSFLGSGEQLKVDHVLEVTG 244
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC 587
VS+D DLL D + + ++L S D Q ++ L + D+L K
Sbjct: 245 TVSEDTFYDLLMALKEGDLAQILNIVQQLSDSGKDFGQFLNDLIVYLRDLLLFKL 299
>gi|450091385|ref|ZP_21855451.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans W6]
gi|450150681|ref|ZP_21876716.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
14D]
gi|449219341|gb|EMC19310.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans W6]
gi|449233310|gb|EMC32387.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
14D]
Length = 558
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVSDLL 257
>gi|429738100|ref|ZP_19271919.1| DNA polymerase III, subunit gamma and tau [Prevotella
saccharolytica F0055]
gi|429160976|gb|EKY03417.1| DNA polymerase III, subunit gamma and tau [Prevotella
saccharolytica F0055]
Length = 566
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 190/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ+ + +L +A+ G + YLF GPRG GKT+ +RIFA A+NC +
Sbjct: 8 ARKYRPLSFDSVVGQSSLTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCQT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + C C C F+ RS ++ E+D+ N + + SLM+ +PP ++K+FII
Sbjct: 68 PTTEGEACNHCESCEAFNEQRSYNIFELDAASNNSVENIKSLMEQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + +SR Q Y F ++ I
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERMTVPGIIE 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I +++ AL I+ K++G +RDA + DQ +S IT E + ++
Sbjct: 188 HLKSVAAKENITYEEEALTIISEKADGGMRDALSIFDQVVSFCQGNITYQGVIEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D +++DLA + ++ + ++ D LI+ LA+ + ++L K L +
Sbjct: 248 SDNYFNIIDLAYENKVADIMALLNSIITKGFDGGNLINGLASHVRNVLMAKDEVTLTLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S+ ++ + + + + L RAL+I++ + R S ++ + + L++++
Sbjct: 308 VSQRQRERYREQAQKCTTKFLYRALEIMNRCDINYRQSSNKRLLVELTLIEVA 360
>gi|363900310|ref|ZP_09326816.1| hypothetical protein HMPREF9625_01476 [Oribacterium sp. ACB1]
gi|395209777|ref|ZP_10398805.1| DNA polymerase III, subunit gamma and tau [Oribacterium sp. ACB8]
gi|361957164|gb|EHL10476.1| hypothetical protein HMPREF9625_01476 [Oribacterium sp. ACB1]
gi|394704762|gb|EJF12294.1| DNA polymerase III, subunit gamma and tau [Oribacterium sp. ACB8]
Length = 525
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/360 (30%), Positives = 185/360 (51%), Gaps = 8/360 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FD++VGQ+ + +S + +S G V YLF G RGTGKTS ++I A A+NC
Sbjct: 5 ALYRKWRSKDFDDIVGQDAITKSFKNQVSSGRVGHAYLFCGTRGTGKTSLAKILARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PC C+ C S S +V E+D+ N D + + + PP ++K++I
Sbjct: 65 EHPINGNPCNECKNCKSILSNTSINVYEMDAASNNGVDDIRLIREQVEYPPVDMKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + L +LE ++V+F++ T E + LP + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSPSAFNAFLKTLEEPPEYVIFILATTEPNALPITILSRCQRYDFKRISVETIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
RL I EE I + ALD+IA +GS+RDA LLDQ + ++I+ A +++G
Sbjct: 185 KRLEMITKEENIAISEEALDYIARMGDGSMRDAVSLLDQCASYDFQQEISYEDALKVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------ 587
V +++ + + ++ + Q +S L + +++ K
Sbjct: 245 VDTAVFSEMISALRQKNIQAVMENIATVLEQGKELSQYVSDLLSYFRNMMLAKSVNNLQG 304
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
L D SE KN K M+++ R +++LSE +Q R + + L L++L+ E+
Sbjct: 305 LVDLSEENKNRLLKDAESMPMEEILRGIRLLSELLQQFRYANQKRVLLETCLMKLAYPET 364
>gi|449919919|ref|ZP_21798232.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
1SM1]
gi|449966371|ref|ZP_21812317.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
15VF2]
gi|449159110|gb|EMB62489.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
1SM1]
gi|449170135|gb|EMB72867.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
15VF2]
Length = 558
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRAIYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|401682895|ref|ZP_10814784.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. AS14]
gi|400183577|gb|EJO17828.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. AS14]
Length = 556
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 194/366 (53%), Gaps = 31/366 (8%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDTYVAALIAHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKLS-----------RALKILSETEKQLRMSKHQTTWLTVA 638
D + H SE ++ L A K L++ + L+ K T +T+
Sbjct: 291 DLIIVKTGGENHHASELFLENLKTPQDTLFAMIDMATKSLADIKNSLQ-PKIYTEMMTIR 349
Query: 639 LLQLSS 644
L ++SS
Sbjct: 350 LAEISS 355
>gi|418987413|ref|ZP_13535087.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377720337|gb|EHT44501.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus CIG1835]
Length = 557
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 179/344 (52%), Gaps = 7/344 (2%)
Query: 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED 360
+RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NCL+ D
Sbjct: 2 YRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTD 61
Query: 361 QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ 420
+PC C C + G + DV E+D+ N D + ++ P ++K++IIDE
Sbjct: 62 GEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSELKYKVYIIDEVH 121
Query: 421 LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480
+L + +L +LE H +F++ T E K+P + +SR+Q++ F I I RL+
Sbjct: 122 MLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLNQIVERLKF 181
Query: 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVSDDEL 539
+ + I + AL FIA S G +RDA ++DQ G +TL A + G V D+ L
Sbjct: 182 VADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSVHDEAL 241
Query: 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFF 599
L D + D + + + + + +LI+ + + D + K E +E R
Sbjct: 242 DHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEYR---- 297
Query: 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E DM L + + ++++T +R S +Q V L++L+
Sbjct: 298 ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 339
>gi|410582418|ref|ZP_11319524.1| DNA polymerase III, subunit gamma/tau [Thermaerobacter subterraneus
DSM 13965]
gi|410505238|gb|EKP94747.1| DNA polymerase III, subunit gamma/tau [Thermaerobacter subterraneus
DSM 13965]
Length = 781
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 177/356 (49%), Gaps = 13/356 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD +VGQ V+R+L +A+ G V YLF GPRGTGKTS +++ A A+NC
Sbjct: 7 ALYRSWRPQRFDGVVGQEHVIRTLANALRTGRVAHAYLFAGPRGTGKTSVAKLLAKAVNC 66
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S E +PC C C + G + DV E+D+ D + L + P R+K++I
Sbjct: 67 QSPEGVEPCNRCDLCREINDGSTMDVLEIDAASNRGIDEIRELRERVRYAPARGRYKVYI 126
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE H +F++ T E +LP + +SR Q++ F ++ I
Sbjct: 127 IDEVHMLTTEAFNALLKTLEEPPTHALFILATTEPHRLPATIVSRCQRFDFHRLSPEQIV 186
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL +C + + AL +A + G +RDA LLDQ L++ G ++ +++ EL+G+
Sbjct: 187 QRLEAVCTAMGVEAEPEALRLLARLAEGGLRDALSLLDQCLAMGGDRLEVAVVTELLGLA 246
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +L L + D + +L +D Q + D+LA L ++
Sbjct: 247 PGEGILALTRAVVEGDMGAGLRAVADLAAQGVDLAQALRDWVACWRDLLA---LRSGLDS 303
Query: 595 RKNFFGKHTSEADMQKLSRAL---------KILSETEKQLRMSKHQTTWLTVALLQ 641
R + A ++ L+R L L+E E LR S L AL++
Sbjct: 304 RHLLYAGEDLAARLEPLARTLDDATALACFDALAEGEALLRWSGQPRLALEAALIR 359
>gi|255304953|ref|ZP_05349127.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
ATCC 43255]
Length = 545
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 190/355 (53%), Gaps = 7/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F++++GQ+ ++++L + I + YLF G RGTGKTS ++IF+ A+NC
Sbjct: 4 ALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +++PC C C + DV E+D+ N D + L +S P ++++K++I
Sbjct: 64 LNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F ++ DI
Sbjct: 124 IDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKDIT 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
R+++IC +E I+ D AL+ IA S G++RDA +LDQ G+ KI EL+G V
Sbjct: 184 LRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ ++L +L + DT ++ E + D LI+ L + +++ K +
Sbjct: 244 NIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNLMVCKVSSELDEI 303
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E + D+ L R L ILS T+ ++ S + + + +++++
Sbjct: 304 ISLPEETIEQLKIQSKNIDINDLIRILNILSITQDDIKSSSNPRVLVEITIMKIA 358
>gi|338533145|ref|YP_004666479.1| DNA polymerase III subunits gamma and tau, truncated, partial
[Myxococcus fulvus HW-1]
gi|337259241|gb|AEI65401.1| DNA polymerase III subunits gamma and tau, truncated [Myxococcus
fulvus HW-1]
Length = 406
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 168/327 (51%), Gaps = 5/327 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP FD++ GQ VVR++ +AI V YLF GPRG GKT+A+R+ A ALNC
Sbjct: 10 LARKWRPQKFDDMTGQEHVVRTVANAIKMDRVAHAYLFCGPRGVGKTTAARLLAKALNCE 69
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+PCG CR C ++G S DV E+D N + V + ++A P R KI+II
Sbjct: 70 KGPTAQPCGECRACVEIAAGTSVDVAEIDGASNNGVENVREIRENAKYLPQRDRHKIYII 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L G + +L +LE HV F+ T E KLP + LSR Q+++F +I +
Sbjct: 130 DEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQRHNFRRIPAARMLQ 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RL+ IC E +L + +S G +RDA LLDQ L+ G + E +G +
Sbjct: 190 RLQEICKAEGAGISDRSLSLVVRQSEGGMRDALSLLDQVLASCGANPSDEEVAEALGAID 249
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLEDC 591
+ D D + D + R E+ +D +L +LA +L + GK ++
Sbjct: 250 RTMVQDFADALVHKDAKRVLERVEEVFNRGLDLKRLAEELAFQLRHLFVTKTLGKAPDEL 309
Query: 592 SEARKNFFGKHTSEADMQKLSRALKIL 618
+E+ + +A+ +++R ++
Sbjct: 310 AESEQKALVALAQDAEAAQITRLFDVV 336
>gi|294496893|ref|YP_003560593.1| DNA polymerase III subunits gamma and tau [Bacillus megaterium QM
B1551]
gi|294346830|gb|ADE67159.1| DNA polymerase III, subunits gamma and tau [Bacillus megaterium QM
B1551]
Length = 562
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 188/356 (52%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ ++++L +A+ + + YLF GPRGTGKT+A++I A A+NC
Sbjct: 5 ALYRVYRPQSFNDVVGQQHIIKTLQNALVQEKFSHAYLFSGPRGTGKTTAAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C + G DV E+D+ N D + + P + R+K++I
Sbjct: 65 EKAPIAEPCNECATCRGITDGSISDVIEIDAASNNGVDEIRDIRDKVKYAPSAVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E K+P + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPAHVIFILATTEPHKIPLTIISRCQRFDFKRISPEDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ + E + + AL IA S G +RDA LLDQ +S +K++L + G V
Sbjct: 185 YRMKEVLGSEELEVSEDALYEIAKASEGGMRDALSLLDQAISYSTEKVSLEDVLSITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-- 592
S ++ ++ + + + L+++ DP + + L D+L + E+ +
Sbjct: 245 SQAFIVKIVQAIFNENIVEALDSVESLIKNGKDPARFVEDLIFYYRDVLLYQASEENAYL 304
Query: 593 ---EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
A F + +S+ D + + + L++T+++++ S H L VAL++L+ S
Sbjct: 305 LEKAAVNEEFKELSSKMDSAFIYKVIAELNQTQQEMKWSNHPRVLLEVALVKLAQS 360
>gi|422855678|ref|ZP_16902336.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1]
gi|327461339|gb|EGF07670.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1]
Length = 556
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F I+ DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIETQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E INF+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGINFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTYIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ S+ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALISHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|449883235|ref|ZP_21785012.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SA38]
gi|449926865|ref|ZP_21800978.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
4SM1]
gi|449160260|gb|EMB63537.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
4SM1]
gi|449250100|gb|EMC48179.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans
SA38]
Length = 558
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRAIYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQALSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|323351733|ref|ZP_08087387.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
VMC66]
gi|322122219|gb|EFX93945.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
VMC66]
Length = 556
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ S+ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALISHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|450164831|ref|ZP_21881553.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans B]
gi|449241371|gb|EMC40004.1| DNA polymerase III subunits gamma and tau [Streptococcus mutans B]
Length = 558
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV ++L A++ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 SHQADGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRAIYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
L I +E ++FD+ AL IA ++ G +RDA +LDQ LSL ++L +A E+ G
Sbjct: 184 EHLADILKKEGLSFDEEALSLIARRAEGGMRDALSILDQDLSLTNDNDVSLEIAEEITGS 243
Query: 534 VS----DDELLDLL 543
+S D + DLL
Sbjct: 244 ISLRALDQYVADLL 257
>gi|220927700|ref|YP_002504609.1| DNA polymerase III subunits gamma and tau [Clostridium
cellulolyticum H10]
gi|219998028|gb|ACL74629.1| DNA polymerase III, subunits gamma and tau [Clostridium
cellulolyticum H10]
Length = 562
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 183/355 (51%), Gaps = 7/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++V Q VVR++ + + G + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKWRPLVFEDVVEQEHVVRTIKNTVKSGRIAHAYLFCGTRGTGKTTMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ +D PC C C DV E+D+ N D V + P +R+K++I
Sbjct: 65 INPKDGNPCNECEVCRGILDESILDVVEIDAASNNSVDNVREIRDEVVYAPSQARYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T + KLP + LSR Q++ F KI IA
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFDFKKITPAGIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R++ I IN D IA ++G++RDA +LDQ G IT + IGIV
Sbjct: 185 ERVKLIAQASGINIDDDGALLIARLADGALRDALSILDQCIAEGSTTITYQNVLDAIGIV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA---GKCLEDC 591
SDD + +++D S + V L D ++ S L ++L K E+
Sbjct: 245 SDDFISEIVDNIESKNVEGLVASVEMLSAEGRDILRFASDLVLYFRNLLICKLSKNPENI 304
Query: 592 SEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ K + K ++++ ++L +K LS E QL+ + +Q +L V L+ +S
Sbjct: 305 LDVGKQYLDKMIAQSEAFTKERLIGIIKELSSFETQLKYALNQRVFLEVMLISIS 359
>gi|325264933|ref|ZP_08131661.1| DNA polymerase III, gamma and tau subunits [Clostridium sp. D5]
gi|324029922|gb|EGB91209.1| DNA polymerase III, gamma and tau subunits [Clostridium sp. D5]
Length = 524
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 185/355 (52%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F ++ GQ+ ++ +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPTEFADVKGQDHIITTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C ++G S +V E+D+ N D + + + P R+K++I
Sbjct: 65 EHPADGSPCGECAMCRSIAAGTSMNVIEIDAASNNGVDNIREIREEVAYRPTEGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q Y F +I I+
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRITIETIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
RL+ + V E + + A+ ++A ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 DRLKELMVTEQVEVEDRAIRYVAKAADGSMRDALSLLDQCIAFYLGQKLTYDNVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V D LL + D + +L+ + QL S + ++L K +ED
Sbjct: 245 VDTDVFSLLLRNIIKRDIPKVLDTVEDLVMQGRELTQLSSDFTWYLRNLLLVKTSDNIED 304
Query: 591 CSEARKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + EA M + L R ++I SE QL+ + + L VAL++L
Sbjct: 305 VLDVSTENMLQLKEEAQMIESDMLLRYIRIFSELSGQLKYATQKRVLLEVALIKL 359
>gi|157414264|ref|YP_001485130.1| DNA polymerase, subunits gamma and tau [Prochlorococcus marinus
str. MIT 9215]
gi|157388839|gb|ABV51544.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9215]
Length = 586
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 191/355 (53%), Gaps = 14/355 (3%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
QK+RPN DELVGQ + +L A+ + YLF+GPRGTGKTS++RIFA +LNCL+
Sbjct: 10 QKYRPNNLDELVGQKFISITLKEALLTQKIAPAYLFNGPRGTGKTSSARIFAKSLNCLAF 69
Query: 359 EDQ--KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PC C C + G + D+ E+D+ + + +++ A P +R+K+++I
Sbjct: 70 DKPTINPCCKCDLCRQITDGNALDIIEIDAASNTGVENIREIIERARFAPTQARWKVYVI 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DEC +L +L ++E V+F++ T +++ + SR QK+ F +I GDI
Sbjct: 130 DECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQKFDFRRISPGDIFQ 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L I +E+I ++ AL IA +SNG +RDA+ LL+QL+LL + IT++ L+G VS+
Sbjct: 190 HLSEIAEKESIEYEVQALKMIAKRSNGGMRDAQSLLEQLNLLQEGITINNIQNLLGEVSE 249
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596
EL +L+ + ++ + +I +L + +P Q+I L N+ D+L S+
Sbjct: 250 IELTNLIQSLVENNPESLIITCNKLYDAGNEPNQIIIGLLNITRDLLLYTTNNKYSDL-- 307
Query: 597 NFFGKHTSEADMQKLSRALKI---------LSETEKQLRMSKHQTTWLTVALLQL 642
++ + ++ K+S+ + L E Q++ S + W + L L
Sbjct: 308 -YYTSDEFQDELDKISKTINKSTIINWHNNLRNIEYQIKTSDNPRLWFEIHLTGL 361
>gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
DSM 3645]
gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
DSM 3645]
Length = 618
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 195/375 (52%), Gaps = 24/375 (6%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
+++++RP F+ELVGQ+ V ++L +AI RG V YLF G RG GKTS++RI A ALNC
Sbjct: 21 VARRYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILAKALNCQ 80
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PC C C + G DV E+D + + L + + P +RFKI+II
Sbjct: 81 RGPSATPCNECDICRSVTVGEDVDVLEIDGASNRGIEEIRQLRSNVNIRPSRARFKIYII 140
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE + E + +L +LE +HV F+ T + +K+P + LSR Q++ F I+ +I +
Sbjct: 141 DEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFGGIRMDEIVT 200
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RL I E + + AL +A K+NGS+RD++ LL+Q L+ G++IT++ +++G
Sbjct: 201 RLAYIVENEGVTAEPEALRLLARKANGSMRDSQSLLEQLLAFGGREITVADVNQMLGAAG 260
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL-----AGKCL-- 588
+++ ++ + D + + + + IDP QLI QL D++ AG L
Sbjct: 261 SEQIAVIMTALAARDAAAVLAYFDQALTRGIDPGQLIEQLLGFFRDMMTLAVGAGPTLLQ 320
Query: 589 ------EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL-- 640
+ EA +G + + A++IL + +++ S H +AL+
Sbjct: 321 TVLPTDAEKIEAVAKSYG-------LANVMAAVQILDDALVRMQRSAHARILAEMALVRV 373
Query: 641 -QLSSSESSLDLNDS 654
QL +S DL ++
Sbjct: 374 CQLEDLQSVADLVET 388
>gi|406669875|ref|ZP_11077137.1| DNA polymerase III, subunit gamma and tau [Facklamia ignava CCUG
37419]
gi|405581638|gb|EKB55653.1| DNA polymerase III, subunit gamma and tau [Facklamia ignava CCUG
37419]
Length = 678
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 184/354 (51%), Gaps = 1/354 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDE++GQ+ + +L +A+ ++ YLF GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRVWRPQTFDEMIGQDPIKETLKNAVKNQQISHAYLFTGPRGTGKTSAAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D PC C C + G DV E+D+ N D + +L + + +K++I
Sbjct: 65 PNTQDGNPCNECDLCQRITQGLLSDVVEIDAASNNGVDEIRNLRDNVRYAASEATYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + V+F++ T E K+P + LSR Q+Y F +I + DIA
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPERVIFILATTEPHKIPATILSRVQRYDFQRISETDIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ L I + + +D AL IA +NG +RD+ LLDQ +S +K+TL A + G +
Sbjct: 185 NHLAHILEHDQVAYDSEALALIARAANGGMRDSLSLLDQAISYHPEKVTLDAALSVSGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S + LL ++ + RE + + I +L L D+L + LE
Sbjct: 245 SQEALLAYIEAIYQHQVEAALAIVREQLSEGKQTARFIEELILLSRDLLLSQYLEKNQTL 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + + ++ L+ET+ +LR S +L + +QL+S + S
Sbjct: 305 LTDAQLETIEAIPASFYYQMIESLNETQNKLRFSNQPQVYLEIFTVQLASEQPS 358
>gi|365905397|ref|ZP_09443156.1| DNA polymerase III subunits gamma and tau [Lactobacillus
versmoldensis KCTC 3814]
Length = 570
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 190/357 (53%), Gaps = 6/357 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ V+ ++L +A++ M + YLF GPRGTGKTS ++I A A+NC
Sbjct: 5 ALYRVWRPQTFADVVGQGVITQTLRNAVASNMTSHAYLFSGPRGTGKTSCAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C + R DV E+D+ N + + + P ++FK++I
Sbjct: 65 LNPQDGEPCNKCEICKAANENRLNDVIEIDAASNNGVEEIRDIRDKVKYAPTEAKFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q + F +I DI
Sbjct: 125 IDEVHMLSQGAFNALLKTLEEPPANVMFILATTEPQKIPATIISRTQSFTFRRISRQDIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ I +D+ AL+ IA + G +RDA +LDQ LS ++TL A E+ G +
Sbjct: 185 DRMELILNDKEIEYDEEALNIIATSAEGGMRDALSILDQALSFGNDQLTLKNAQEVTGAL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S+++++ + ++ ++ + +++ S ++ + + +I+ D S
Sbjct: 245 SNEQIVSYMTAVAENNPADALTNLYKILASGRSAIRFTEMIIRVCRNIILYNSNSDLSNQ 304
Query: 595 RKNFFGKHTSEA-----DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N + A D Q+L + +S T++ L+ S ++ + +++S +
Sbjct: 305 MDNTIMTNEMLAIADKFDNQRLFYIVDQVSNTQRNLKNSNQTDVYMEILTVKISEPQ 361
>gi|428314877|ref|YP_007118895.1| DNA polymerase III subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428244912|gb|AFZ10696.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 471
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 180/353 (50%), Gaps = 7/353 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP ELVGQ+ + +L +AI+ + YLF GPRGTGKTS +RI A +LNCL
Sbjct: 5 LHLKYRPKNLQELVGQDTIKTTLTNAITSDKIAQAYLFTGPRGTGKTSTARILAKSLNCL 64
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + PCG C C S S DV E+D+ N D L++ + P SR++I+
Sbjct: 65 NSKKPTATPCGECSSCKTIDSCSSLDVTEIDAASHNGVDDARELIQHSNFAPALSRYRIW 124
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
I+DEC L +L LE HVVF++ T E K+ + +SR Q ++F + I
Sbjct: 125 ILDECHQLSTSAQNALLKCLEEPPAHVVFILCTTEAHKVLPTIISRCQTFNFRALSVDAI 184
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+L +I E+I A+ IA +G +RDA LL QLSLL +ITL+ E+ G +
Sbjct: 185 VGQLHKISSAESIEIASEAMRAIARTCDGGLRDALQLLSQLSLLNSEITLTQVAEVSGSI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S+ + + LL S DT + + +R L+ S P ++S L + D+L K C
Sbjct: 245 SEQDSIALLKAIHSGDTLSVLQSSRTLIDSGKTPKLILSSLLAAMRDLLIVKSTRHCQNL 304
Query: 595 RKNFFGKHTSEA-----DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
G + D + + A L ++E QLR S + TWL V LL L
Sbjct: 305 IAGPVGYSQLRSLALHLDFETIDAACTQLQKSEFQLRTSTNAATWLEVCLLNL 357
>gi|153956411|ref|YP_001397176.1| DNA polymerase III subunits gamma and tau [Clostridium kluyveri DSM
555]
gi|219856723|ref|YP_002473845.1| hypothetical protein CKR_3380 [Clostridium kluyveri NBRC 12016]
gi|146349269|gb|EDK35805.1| DnaX [Clostridium kluyveri DSM 555]
gi|219570447|dbj|BAH08431.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 553
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 195/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQN + +L + I V YLF G RGTGKTS ++I A A+NC
Sbjct: 5 TLYREWRPKNFSDVVGQNHITVTLKNQILNNRVAHAYLFCGTRGTGKTSMAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L ++ +PC C C + G S DV E+D+ + + + ++++ PP ++K++I
Sbjct: 65 LDIQQGEPCNECEMCKKINQGISMDVIEMDTASKRKLEDIKDVIENVKYPPQEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR QK+ F +IK +I
Sbjct: 125 MDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFDFRRIKSSEIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+RLR I EE I D +L+ I+ +G++RDA +LDQ +S+ K+ + +++G+V
Sbjct: 185 NRLRAIVNEEGIFADDRSLNLISRICDGAMRDALSVLDQAISMGSGKVEYNSIVDMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPM----QLISQLANLIMDILAGKCLE- 589
+++ L L D + + ++ +++ S D ++I L NL+M ++ E
Sbjct: 245 TNENLFHLTDSIIEKNVELSMKVIDDIVLSGKDIYNFIKEMIVHLRNLLMVKVSNNPEEI 304
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D SE K + ++++ R + I + E+Q + K +L +A++++ E
Sbjct: 305 LDISEENIELLKKQAQKIRVEEIMRHINIFQDAEEQSKWVKQSRIYLELAVIKMCKIE 362
>gi|170754521|ref|YP_001779654.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B1
str. Okra]
gi|429244929|ref|ZP_19208347.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001628]
gi|169119733|gb|ACA43569.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum B1
str. Okra]
gi|428758051|gb|EKX80505.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001628]
Length = 541
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 194/358 (54%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ + +L + + + YLF G RGTGKTS ++I + A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C +SG DV E+D+ + + + ++++ PP + K++I
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKNKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR Q++ F +I++ +I
Sbjct: 125 MDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR I E+ I D +L+ IA S+G++RDA +LDQ+ G K+ +++G+V
Sbjct: 185 ERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+++ LL + + + D ++ +++ S D I + + +IL K +
Sbjct: 245 TNENLLRITNSIIEKDIEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPNEI 304
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + + + ++++ R +KIL E E+Q + K +L +A+L++ E
Sbjct: 305 LDMSSENIDLVKEQSEKIRIEEIMRDIKILQEAEQQSKWVKQNRIYLELAVLKMCKIE 362
>gi|329116172|ref|ZP_08244889.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
NCFD 2020]
gi|333905296|ref|YP_004479167.1| DNA polymerase III subunit gamma/tau [Streptococcus parauberis KCTC
11537]
gi|326906577|gb|EGE53491.1| DNA polymerase III, subunit gamma and tau [Streptococcus parauberis
NCFD 2020]
gi|333120561|gb|AEF25495.1| DNA polymerase III subunit gamma/tau [Streptococcus parauberis KCTC
11537]
gi|456371264|gb|EMF50160.1| DNA polymerase III subunits gamma and tau [Streptococcus parauberis
KRS-02109]
gi|457095051|gb|EMG25546.1| DNA polymerase III subunits gamma and tau [Streptococcus parauberis
KRS-02083]
Length = 558
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 157/264 (59%), Gaps = 6/264 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ+V+ +L A+ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQSVISTTLKQAVESKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRANYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKQKDIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
+ L I E I F++ AL IA ++ G +RDA +LDQ LSL +ITLS+A E+ G
Sbjct: 184 AHLMHILTLENIPFEEEALGLIARRAEGGMRDALSILDQALSLSPDDQITLSIAEEITGS 243
Query: 534 VS----DDELLDLLDLALSSDTSN 553
+S DD + ++++ + SN
Sbjct: 244 ISILALDDYVANIINQEAQAALSN 267
>gi|229495419|ref|ZP_04389154.1| DNA polymerase III, subunit gamma and tau [Porphyromonas
endodontalis ATCC 35406]
gi|229317862|gb|EEN83760.1| DNA polymerase III, subunit gamma and tau [Porphyromonas
endodontalis ATCC 35406]
Length = 594
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 163/288 (56%), Gaps = 2/288 (0%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++KFRP+ F+ L+GQ V +L AI + YLF GPRG GKTSA+RIFA A+NC S
Sbjct: 9 ARKFRPDSFESLLGQEAVSETLRRAILQQKTAHAYLFCGPRGVGKTSAARIFARAINCAS 68
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L + CG C C F+ RS +V E+D+ N ++ + L++ +PP R+KI+II
Sbjct: 69 PLASGEACGECDSCRAFAEQRSFNVFEMDAASNNSANDIRQLIEEVNIPPQVGRYKIYII 128
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE ++VVF+M T E K+ + LSR Q + F I I
Sbjct: 129 DEVHMLSTAAFNAFLKTLEEPPEYVVFIMATTEKQKILPTILSRCQVFDFKPIPSDVIIG 188
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
+LR I E I ++ AL+ IA K++G +RDA + D++ S +++ S E + I+
Sbjct: 189 QLRHIAQLEEIQVEEKALELIARKADGGMRDALSVFDRIASYTDGEVSYSRTLESLNILD 248
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
DD +DL + +D ++T++ EL+ DP ++ L + + ++L
Sbjct: 249 DDYYFRFVDLLVHNDYASTLLLLDELIMRGFDPRTIVLGLTDFLRNLL 296
>gi|406998237|gb|EKE16179.1| hypothetical protein ACD_11C00028G0006 [uncultured bacterium]
Length = 551
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 183/331 (55%), Gaps = 11/331 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++ GQ+ +V++L +AI+ + YLF GPRGTGKT+ +R+FA A+NC
Sbjct: 5 TLYRKYRPQKFSDIFGQSHIVQTLSNAITHNRIGHAYLFTGPRGTGKTTMARLFAKAVNC 64
Query: 356 L--SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
+ +PC C C S+G+S D+ E+D+ + + L ++A LPP +++KI
Sbjct: 65 QKNNAATAEPCLECEVCKNISAGKSLDIFEIDAASNTGVENIRELRETAKLPPSQAKYKI 124
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
+IIDE +L + +L +LE HV+F++ T E+ K+P + +SR Q++ F +I +
Sbjct: 125 YIIDEVHMLSSGAFNALLKTLEEPPAHVIFILATTEIHKVPDTIISRCQRFDFTRISLEN 184
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIG 532
I +L I +E + +++AL+ IA + G +RDAE LL Q +SL KKIT E++G
Sbjct: 185 IIKKLSDIAAKEEVEIEKSALEAIAISAEGGMRDAESLLGQVISLEDKKITTKEVEEILG 244
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS 592
+ + DL + +S +T + E+ S D + N IL D S
Sbjct: 245 TTNRQSIEDLTEALISKNTLKAISLIDEVANSGFDLDVFHKSVLNYFRQILLVSI--DQS 302
Query: 593 EARKNFFGKHTSEA-----DMQKLSRALKIL 618
A KNF + TSE D+ K++ +IL
Sbjct: 303 LA-KNFSFELTSEQIKKILDLVKITNTAEIL 332
>gi|293374915|ref|ZP_06621213.1| DNA polymerase III, subunit gamma and tau [Turicibacter sanguinis
PC909]
gi|292646464|gb|EFF64476.1| DNA polymerase III, subunit gamma and tau [Turicibacter sanguinis
PC909]
Length = 605
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/365 (29%), Positives = 191/365 (52%), Gaps = 6/365 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + RP F ++VGQ +VR++ +A+ ++ YLF GPRGTGKTS ++I A A+NC
Sbjct: 5 ALYRAHRPQKFSDVVGQVHIVRTIQNALKHERLSHAYLFCGPRGTGKTSIAKIIAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ +PC C C ++G + DV E+D+ N D + + P R+K++I
Sbjct: 65 VNYPTDEPCNECVNCTTITNGSNSDVFEIDAASNNGVDEIREIRDKVKYAPTMGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPPTIISRCQRFDFKQISTKEIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I + I F++ A+ +A + G +RDA LLDQ +S KI + + L G +
Sbjct: 185 QHLSEILTSQNIEFEEDAVQLVAELAEGGMRDALSLLDQVISYSYDKILIDDVHALSGTI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++ +LL ++ D S + +E++ + +++I L N+ D+L + + + S
Sbjct: 245 ANHQLLQIIRGIKDLDFSTIIDLIQEMIDQGKEAIRIIDGLINVYRDLLMYQKIGNSSNI 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
F T E ++ + L L++ + ++R + H L V LL L+ ++S +
Sbjct: 305 SNLLISDELFIPLTEELRSAQIVQYLFKLNKLQNEMRFANHPELMLEVGLLSLTETDSEM 364
Query: 650 DLNDS 654
N +
Sbjct: 365 TGNKA 369
>gi|357638770|ref|ZP_09136643.1| DNA polymerase III, subunit gamma and tau [Streptococcus urinalis
2285-97]
gi|418417554|ref|ZP_12990749.1| DNA polymerase III, subunit gamma and tau [Streptococcus urinalis
FB127-CNA-2]
gi|357587224|gb|EHJ56632.1| DNA polymerase III, subunit gamma and tau [Streptococcus urinalis
2285-97]
gi|410871473|gb|EKS19421.1| DNA polymerase III, subunit gamma and tau [Streptococcus urinalis
FB127-CNA-2]
Length = 557
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 187/355 (52%), Gaps = 4/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L A+ G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFHEMVGQTVVSTTLKQAVETGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKTIKQIDIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
+ L I E I++D ALD I+ ++ G +RDA +LDQ LSL K++ +A E+ G
Sbjct: 184 NHLITILENEGISYDTEALDIISRRAEGGMRDALSILDQALSLTTDAKVSQEIAEEITGT 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S L D + L D ++ + +L + + L D+L K
Sbjct: 244 ISLSLLDDYVQKLLEKDAASALAILEQLFEQGKSMQRFATDLLLYFRDLLMVKS--GSEN 301
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
++ + E +L + + I++E+ ++ H + V ++L+ +S+
Sbjct: 302 LHQSALFELNLEMATSQLFQMINIVTESLPAIKQGTHPKVFAEVMTIKLTEVDSA 356
>gi|197302301|ref|ZP_03167360.1| hypothetical protein RUMLAC_01028 [Ruminococcus lactaris ATCC
29176]
gi|197298732|gb|EDY33273.1| DNA polymerase III, subunit gamma and tau [Ruminococcus lactaris
ATCC 29176]
Length = 522
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 186/355 (52%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ +V +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPAEFEDVKGQEHIVTTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PCG C C ++G S +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVNGSPCGECAMCKSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E+ K+P + LSR Q Y F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRISIETIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+R++ + E I + AL +IA ++GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 ARMQELMDTEQIEVEDKALRYIAKAADGSMRDALSLLDQCIAFYLGQKLTYDHVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V D LL + + + + EL+ + QL+ + ++L K +ED
Sbjct: 245 VDTDVFSKLLRNVIGRNVAAVLDIVEELVMQGRELTQLVGDFTWYLRNLLLVKTSDNIED 304
Query: 591 CSEARKNFFGKHTSEADMQKLS---RALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + E+DM +L R +++ SE Q++ + + L VAL++L
Sbjct: 305 VLDVSTENMMQLKEESDMIELDMLLRYIRVFSELSGQMKYATQKRVLLEVALIKL 359
>gi|296332940|ref|ZP_06875398.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305672717|ref|YP_003864388.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149904|gb|EFG90795.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305410960|gb|ADM36078.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 563
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 196/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +LD IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVEAEQLQVEEGSLDIIASAADGGMRDALSLLDQAVSFSGDVLKVEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + Q + + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRGLSEQIPAQAIYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ DL + + ++
Sbjct: 365 AADLPEVDMLMK 376
>gi|326203226|ref|ZP_08193091.1| DNA polymerase III, subunits gamma and tau [Clostridium
papyrosolvens DSM 2782]
gi|325986484|gb|EGD47315.1| DNA polymerase III, subunits gamma and tau [Clostridium
papyrosolvens DSM 2782]
Length = 562
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 191/374 (51%), Gaps = 7/374 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++V Q VVR++ + + G V YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKWRPLVFEDVVEQEHVVRTIKNTVKSGRVAHAYLFCGTRGTGKTTMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D PC C C DV E+D+ N D V + + P +R+K++I
Sbjct: 65 LNPKDGDPCNECEVCRGILDESILDVVEIDAASNNSVDNVREIREEVVYAPSQARYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T + KLP + LSR Q++ F KI IA
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFDFKKITPAGIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R++ I I D IA ++G++RDA +LDQ G IT + IGIV
Sbjct: 185 ERVKVIARASGIQLDDDGALLIARLADGALRDALSILDQCIAEGNNNITHENVLDAIGIV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA---GKCLEDC 591
SDD + +++D S + V +L S D ++ S L ++L K E+
Sbjct: 245 SDDFISEIVDNIQSKNVEGLVADVEKLSASGRDILRFASDLVLYFRNLLICKLSKNPENI 304
Query: 592 SEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + K ++++ ++L +K LS E QL+ + +Q +L V L+ +S
Sbjct: 305 LDMGNQYLDKMILQSEVFSKEQLIGIIKELSSFETQLKYALNQRVFLEVMLISISVGSYG 364
Query: 649 LDLNDSKLCLRYAH 662
+D+ L R A+
Sbjct: 365 RSGSDNNLADRIAN 378
>gi|332880680|ref|ZP_08448353.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|357045950|ref|ZP_09107580.1| DNA polymerase III, subunit gamma and tau [Paraprevotella clara YIT
11840]
gi|332681314|gb|EGJ54238.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|355530956|gb|EHH00359.1| DNA polymerase III, subunit gamma and tau [Paraprevotella clara YIT
11840]
Length = 604
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 188/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ FD +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NCL
Sbjct: 8 ARKYRPSAFDAVVGQEALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINCLH 67
Query: 358 LEDQK-PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N + + +L++ +PP R+K+FII
Sbjct: 68 PSDNREACDECESCKAFNEQRSLNIHELDAASNNSVEEIRALIEKVRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +V+F++ T E K+ + LSR Q Y F ++ I +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQVYDFNRMSVQTIVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E ++ AL+ IA K++G +RDA + DQ +S G +T E + ++
Sbjct: 188 HLKFVADKEGYAYEPEALNIIAQKADGGMRDALSIFDQTVSFTGGTLTYKKVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L D L ++ ++ E++ + I+ LA + D+L + L +
Sbjct: 248 YEYYFRLTDHFLKNEAVQCMLVFNEILEKGFEGSHFITGLAAHLRDLLVSRDAMTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S++ + + + + + L RA+K+ S+ + R SK++ + + L+QLS
Sbjct: 308 VSDSIRARYQEQSQRCTPKFLYRAIKLCSDCDLNYRASKNKRLLVEITLIQLS 360
>gi|266621803|ref|ZP_06114738.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi
DSM 13479]
gi|288866492|gb|EFC98790.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi
DSM 13479]
Length = 540
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 193/368 (52%), Gaps = 14/368 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++ GQ+ VV++L + + + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPASFEDVRGQDHVVQTLKNQMVSDRIGHAYLFCGTRGTGKTSIAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S D PCG CR C ++G S +V E+D+ N + + + PP +++++I
Sbjct: 65 ESPVDGSPCGECRTCKNIAAGSSLNVVEIDAASNNGVENIREIRDEVQYPPTEGKYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + +SR Q+Y F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVMSRCQRYDFKRITVDTIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
+ L+++ E I+ + AL +IA ++G++RDA LLDQ G+ +T +++G
Sbjct: 185 THLQKLTEAEHISVEDKALAYIAKAADGAMRDALSLLDQCVAFHYGEVLTYDNVLDVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSN-------TVIRARELMRSKIDPMQLISQLANLIM--DILA 584
V L + + T + VI+ REL + D I L NL++ +
Sbjct: 245 VDITVFSQLFRAVVENRTKDCIQSLEEMVIQGRELGQFVTD---FIWYLRNLLIVKSVDD 301
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ + D S N + D + L R +++ S+ QLR + + + VAL++L+
Sbjct: 302 AENMLDMSTENMNLLKEEAGLIDGETLLRFIRVFSDLSNQLRYASQKRVLIEVALIKLTR 361
Query: 645 SESSLDLN 652
E +L+
Sbjct: 362 PEMEENLD 369
>gi|423297338|ref|ZP_17275399.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL03T12C18]
gi|392667515|gb|EIY61023.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL03T12C18]
Length = 621
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 189/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R++ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQS-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|304385469|ref|ZP_07367814.1| DNA polymerase III, gamma/tau subunit DnaX [Pediococcus
acidilactici DSM 20284]
gi|304328676|gb|EFL95897.1| DNA polymerase III, gamma/tau subunit DnaX [Pediococcus
acidilactici DSM 20284]
Length = 578
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 185/361 (51%), Gaps = 20/361 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ VV R+L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQKFADMVGQEVVTRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 HYLKDGEPCNECATCRAITDGNLNDVIEIDAASNNGVEEIRDIRDKAKYAPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRTQRFDFKRITPTQSY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
R+ I ++ I +D AL IA + G +RDA +LDQ+ G + +T+ A + G V
Sbjct: 185 DRMVYILEQKGIEYDPKALSIIAKAAEGGMRDALSILDQVISFGNETVTMDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIM-----DILAG 585
+ L L DT + +++ D +LI L NL++ ++
Sbjct: 245 NQQLLDQYLTQIFEKDTPAALETLHQILDEGKDGQRLIEDLIAVERNLLLYQEDPQLVKE 304
Query: 586 KCLEDCSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ L D SE EADM +L + L++ ++Q+R + H +L V ++L
Sbjct: 305 QSLSDLSE-------DFVKEADMVSGNELYEMIDTLNQIQQQMRFTTHPDVYLEVLTIKL 357
Query: 643 S 643
S
Sbjct: 358 S 358
>gi|312864982|ref|ZP_07725210.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei
F0415]
gi|311099093|gb|EFQ57309.1| DNA polymerase III, subunit gamma and tau [Streptococcus downei
F0415]
Length = 566
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 186/355 (52%), Gaps = 4/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F ELVGQ VV +L A++ G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFQELVGQEVVATTLKQAVASGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVDGEPCNDCDICRDITEGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQTAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
+ I +E I ++ AL+ IA ++ G +RDA +LDQ LSL ++T ++A E+ G
Sbjct: 184 QHMAEILDKEGIAYEDQALNLIARQAEGGMRDALSILDQALSLSADNQVTAAIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
V L D L + D+ + + S + + L + + DIL + S
Sbjct: 244 VGQAALDDYLANLIQHDSLAALTNLNTIFDSGKGMSRFATDLLDYLRDILLVQAGGQVSR 303
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + F + D ++L + I++ T +L+ + + +QL+ ++ +
Sbjct: 304 SSQAF--EENLTLDQRRLFAMIDIITRTMPELKNGTQPKIYAEMMTIQLADAQQA 356
>gi|189485278|ref|YP_001956219.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287237|dbj|BAG13758.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 531
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 178/351 (50%), Gaps = 4/351 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++KFRP FDE+VGQ + ++L ++IS + YLF GPRG GKT+ +RI A ALNC
Sbjct: 6 LARKFRPQNFDEVVGQEHISQTLKNSISEKRIAHAYLFSGPRGCGKTTMARILAKALNCK 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ KPCG+C C S S DV E+D N D + L ++ SS++KI+II
Sbjct: 66 NGPTIKPCGVCENCVEISKSSSVDVLEIDGASNNGIDDIRVLRENVKFSTASSKYKIYII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE + + + +L +LE HV+F+M T E K+P + LSR Q+Y F I ++
Sbjct: 126 DEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSRCQRYRFKLISGAEMVC 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
++ I EE D AL+ + + S GS+RDA LLDQ +S +IT L+G++
Sbjct: 186 AIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLLDQAVSSNTGRITGDYMRGLLGLLP 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDCS 592
D ++ + D D + +E+ + +Q L + +++ + + S
Sbjct: 246 KDIIVSVTDNIAKGDIHAILKIVKEIYEQGYNILQFARDLREHLRNVMIYSINPAIAEIS 305
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
K F S + + R +LS+ +++R L + LL++S
Sbjct: 306 SEDKKIFDVQKSLFTVSRYVRMNNLLSKALEEMRWHDQPRILLEMYLLKMS 356
>gi|258448175|ref|ZP_05696304.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6224]
gi|257858690|gb|EEV81564.1| DNA polymerase III gamma and tau [Staphylococcus aureus A6224]
Length = 565
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 182/349 (52%), Gaps = 7/349 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +AIS+ + Y+F GPRGTGKTS +++FA A+NC
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G + DV E+D+ N D + ++ S++K++I
Sbjct: 65 LNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYASSESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR+Q++ F I I
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + I + AL FIA S G +RDA ++DQ G +TL A + G V
Sbjct: 185 ERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D+ L L D + D + + + + + +LI+ + + D + K E +E
Sbjct: 245 HDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEKDTEY 304
Query: 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
R E DM L + + ++++T +R S +Q V L++L+
Sbjct: 305 R----ALMNLELDM--LYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|229829736|ref|ZP_04455805.1| hypothetical protein GCWU000342_01833 [Shuttleworthia satelles DSM
14600]
gi|229791725|gb|EEP27839.1| hypothetical protein GCWU000342_01833 [Shuttleworthia satelles DSM
14600]
Length = 550
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 199/356 (55%), Gaps = 10/356 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ+ +V +L + + + YLF G RGTGKT+ ++I A A+NC
Sbjct: 17 ALYRKFRPQTFEDVKGQDHIVTTLKNQLKNDRIGHAYLFTGTRGTGKTTVAKILARAVNC 76
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C ++G S +V E+D+ N + + +++ PP R+K++I
Sbjct: 77 QHPVDGSPCGKCSVCRAINAGSSMNVIEIDAASNNGVNNIREIIEEVAYPPTEGRYKVYI 136
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E++K+P + LSR Q+Y F +I IA
Sbjct: 137 IDEVHMLSPGAYNALLKTLEEPPEYVIFILATTEVNKIPITILSRCQRYDFHRISVVTIA 196
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
RLR++ EE + + A+D+IA ++GS+RDA L+DQ LG+K+T +++G
Sbjct: 197 GRLRQLMEEEGLAVEDKAVDYIARAADGSMRDALSLMDQCIAFYLGQKLTYDDTLKVLGA 256
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGKCLE 589
V D LL + D + ++ E++ +P+Q ++ L NL++ + +G +E
Sbjct: 257 VDTDVFSHLLRAIIGRDVTESIRMIGEIIAEGREPVQFVNDFTWYLRNLLL-LKSGDHME 315
Query: 590 DCSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
D + + EA M + L R ++ILS+ Q+R + + + +A+++L
Sbjct: 316 DALDISSDNLALLQEEAQMVEDEILMRYIRILSDLSSQIRYASQKRILIEIAVIKL 371
>gi|227499706|ref|ZP_03929806.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC
35098]
gi|227218173|gb|EEI83436.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC
35098]
Length = 605
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 192/359 (53%), Gaps = 11/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FD+++GQ+ VV L + + + Y+F G RG GKT+ ++IFA A+NC
Sbjct: 4 ALYRQYRPKTFDQVLGQDRVVNVLKNQVKNKNFSHAYIFAGERGCGKTTCAKIFAKAINC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D PC C C + D+ E+D+ R D + +L + PP R+K++I
Sbjct: 64 LHPVDGSPCLECENCKAIDEESTIDIIEMDAASNRRIDDIRNLKDNVIYPPNKLRYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE ++ E + +L +E H+VF++ T E+DK+P + LSR+Q + F KI+ I
Sbjct: 124 IDEAHMITREAFNALLKIMEEPPSHLVFILATTEIDKIPNTILSRAQNFEFNKIEAKKIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
++ I ++ I + A+D I K++G++RDA +LDQ LS K TL+ L+G+V
Sbjct: 184 EQINLILEDKNIVMENEAIDLIIRKASGAMRDALSILDQVLSFDKAKFTLAEVENLLGVV 243
Query: 535 SDDELLDLLDLALSSDTSNT---VIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
E+ L +S + S + V RE +S D ++ L + DI+ K D
Sbjct: 244 DFFEIDKLTSSIISYNQSESLSYVFSLRENNKSNKD---ILDSLTFYLRDIMIYKMTGDD 300
Query: 592 ----SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+E R +F K +E ++ +L L ILS+ +LR + + + + L++L +S+
Sbjct: 301 RLFENEERADFIKKRAAELEIDRLLDMLDILSDYSNKLRSADNTDLIIELMLVRLITSK 359
>gi|387902371|ref|YP_006332710.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. KJ006]
gi|387577263|gb|AFJ85979.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. KJ006]
Length = 861
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 189/368 (51%), Gaps = 26/368 (7%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F LVGQ VVR+L A+ G + YLF G RG GKT+ SRIFA ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ +PCG+CR C GR D E+D+ D + +L++ A P +RFK+++I
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F++ T + K+P + LSR +++ ++ G I S
Sbjct: 126 DEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVS 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L RI EE I+F+Q AL +A + GS+RDA L DQ ++ ++T S ++G +
Sbjct: 186 HLERILGEEQISFEQQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGALD 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI-----LAGKCLED 590
++ LLD + D + A E+ + + LA+L+ I G L++
Sbjct: 246 QTYMVRLLDALAAGDGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDE 305
Query: 591 CSEARKNFFGKHTSEADMQKLSRAL---------KILSETEKQLRMSKHQTTWLTVALLQ 641
EA AD+++ ++ L +I + +L ++ + T+ LL+
Sbjct: 306 WPEA-----------ADLRRFAQTLSPEKVQLFYQIATVGRAELGLAPDEYAGFTMTLLR 354
Query: 642 LSSSESSL 649
+ + E ++
Sbjct: 355 MLAFEPAV 362
>gi|418069745|ref|ZP_12707022.1| DNA polymerase III subunits gamma and tau [Pediococcus acidilactici
MA18/5M]
gi|357536276|gb|EHJ20307.1| DNA polymerase III subunits gamma and tau [Pediococcus acidilactici
MA18/5M]
Length = 578
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 185/361 (51%), Gaps = 20/361 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ VV R+L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQKFADMVGQEVVTRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 HYLKDGEPCNECATCRAITDGNLNDVIEIDAASNNGVEEIRDIRDKAKYAPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRTQRFDFKRITPTQSY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
R+ I ++ I +D AL IA + G +RDA +LDQ+ G + +T+ A + G V
Sbjct: 185 DRMVYILEQKGIEYDPKALSIIAKAAEGGMRDALSILDQVISFGNETVTMDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIM-----DILAG 585
+ L L DT + +++ D +LI L NL++ ++
Sbjct: 245 NQQLLDQYLTQIFEKDTPAALETLHQILDEGKDGQRLIEDLIAVERNLLLYQEDPQLVKE 304
Query: 586 KCLEDCSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ L D SE EADM +L + L++ ++Q+R + H +L V ++L
Sbjct: 305 QSLSDLSE-------DFVKEADMVSGNELYEMIDTLNQIQQQMRFTTHPDVYLEVLTIKL 357
Query: 643 S 643
S
Sbjct: 358 S 358
>gi|427418507|ref|ZP_18908690.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 7375]
gi|425761220|gb|EKV02073.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 7375]
Length = 724
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 163/292 (55%), Gaps = 2/292 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +A+ + + YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFAQLVGQGAIATTLSNALQQNRIAPAYLFCGPRGTGKTSSARILAKSLNCL 65
Query: 357 SLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S E PCG C+ C + G S D+ E+D+ D + L++ A P R K++
Sbjct: 66 SSEVPTSTPCGQCQVCREITVGASLDIVEIDAASNTGVDNIRELIERAQFAPVQCRHKLY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
++DE +L + +L +LE HVVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 VLDEVHMLSTAAFNALLKTLEEPPPHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +EAI AL +A S G +RDAE LLDQL LL +IT+ ++L+G V
Sbjct: 186 VQHLDYIAQQEAIAIAPDALQLVAQLSQGGLRDAESLLDQLGLLDGEITIEAVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK 586
S+ +LL L+ + D + +I AR+LM +P+ ++ L D+L K
Sbjct: 246 SERDLLALVQAVSADDGAQVLILARQLMDRGREPLMVLQSLVAFYRDLLIAK 297
>gi|313888954|ref|ZP_07822614.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845127|gb|EFR32528.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 577
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/361 (32%), Positives = 188/361 (52%), Gaps = 5/361 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDEL GQ VV SL + + ++ Y+F G RGTGKTSA++I + A+NC
Sbjct: 4 ALYRKYRSKTFDELYGQEAVVASLKNQVKNNEISHAYIFQGTRGTGKTSAAKILSRAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D PC C C + DV E+D+ N D + L PP + ++K++I
Sbjct: 64 LHPVDGNPCNECENCKRILNESVLDVVEMDAASNNGVDDIRDLKDKVIYPPQALKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L LE +H++F++ T E++K+P + LSRSQK++F +I DI
Sbjct: 124 IDEVHMLSKGAFNALLKILEEPPRHLIFILATTEIEKIPATILSRSQKFNFKRISVEDIE 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
S L+RI E + D+ IA ++G++RDA +LDQL K I L A E++GI
Sbjct: 184 SNLKRITELEGKSCDEEVFTLIAKTADGAMRDALSVLDQLITKNKDHIRLEDAMEVLGIS 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S D L L + + S ++ E+ R +D L SQ+ + DIL K L D +
Sbjct: 244 SSDLLFSLSKAMIGRNMSESLNVIDEIYREGVDFNTLSSQILSHFRDILLVKTLSDPKKI 303
Query: 595 RKNFFGKH----TSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
+ K +++ L ++IL E +++ + ++ + +++ + S D
Sbjct: 304 VYTTYLKEFQNLAGSIELEDLLDIIEILKELALEIKYADNKRVVFEMNAIKICNRSSKND 363
Query: 651 L 651
L
Sbjct: 364 L 364
>gi|270291184|ref|ZP_06197407.1| DNA polymerase III subunit gamma/tau [Pediococcus acidilactici 7_4]
gi|270280580|gb|EFA26415.1| DNA polymerase III subunit gamma/tau [Pediococcus acidilactici 7_4]
Length = 578
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 185/361 (51%), Gaps = 20/361 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ VV R+L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQKFADMVGQEVVTRTLKNALITKQTSHAYLFTGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 HYLKDGEPCNECATCRAITDGNLNDVIEIDAASNNGVEEIRDIRDKAKYAPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPTNVIFILATTEPQKIPLTIISRTQRFDFKRITPTQSY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
R+ I ++ I +D AL IA + G +RDA +LDQ+ G + +T+ A + G V
Sbjct: 185 DRMVYILEQKGIEYDPKALSIIAKAAEGGMRDALSILDQVISFGNETVTMDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIM-----DILAG 585
+ L L DT + +++ D +LI L NL++ ++
Sbjct: 245 NQQLLDQYLTQIFEKDTPAALETLHQILDEGKDGQRLIEDLIAVERNLLLYQEDPQLVKE 304
Query: 586 KCLEDCSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ L D SE EADM +L + L++ ++Q+R + H +L V ++L
Sbjct: 305 QSLSDLSE-------DFVKEADMVSGSELYEMIDTLNQIQQQMRFTTHPDVYLEVLTIKL 357
Query: 643 S 643
S
Sbjct: 358 S 358
>gi|134295858|ref|YP_001119593.1| DNA polymerase III subunits gamma and tau [Burkholderia
vietnamiensis G4]
gi|134139015|gb|ABO54758.1| DNA polymerase III, subunits gamma and tau [Burkholderia
vietnamiensis G4]
Length = 880
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 189/368 (51%), Gaps = 26/368 (7%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F LVGQ VVR+L A+ G + YLF G RG GKT+ SRIFA ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ +PCG+CR C GR D E+D+ D + +L++ A P +RFK+++I
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F++ T + K+P + LSR +++ ++ G I S
Sbjct: 126 DEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVS 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L RI EE I+F+Q AL +A + GS+RDA L DQ ++ ++T S ++G +
Sbjct: 186 HLERILGEEQISFEQQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGALD 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI-----LAGKCLED 590
++ LLD + D + A E+ + + LA+L+ I G L++
Sbjct: 246 QTYMVRLLDALAAGDGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDE 305
Query: 591 CSEARKNFFGKHTSEADMQKLSRAL---------KILSETEKQLRMSKHQTTWLTVALLQ 641
EA AD+++ ++ L +I + +L ++ + T+ LL+
Sbjct: 306 WPEA-----------ADLRRFAQTLSPEKVQLFYQIATVGRAELGLAPDEYAGFTMTLLR 354
Query: 642 LSSSESSL 649
+ + E ++
Sbjct: 355 MLAFEPAV 362
>gi|289548682|ref|YP_003473670.1| DNA polymerase III subunits gamma and tau [Thermocrinis albus DSM
14484]
gi|289182299|gb|ADC89543.1| DNA polymerase III, subunits gamma and tau [Thermocrinis albus DSM
14484]
Length = 469
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 153/266 (57%), Gaps = 1/266 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
++K+RP F ++VGQ R +L+A+ G + YLF GPRGTGKT+ +RI A+NCL
Sbjct: 5 FARKYRPKKFSQVVGQETAKRVILNAVRLGKLHHAYLFSGPRGTGKTTLARILTRAVNCL 64
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ ++ +PCG C C G D+ E+D+ D + +L + P ++K++I+
Sbjct: 65 NPQEGEPCGECENCVAIDKGSFPDLVEMDAASNRGIDDIRNLKDAVSYTPLKGKYKVYIL 124
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + +L +LE +FV+ T E +K+P + LSR Q+ F K+++ + S
Sbjct: 125 DEAHMLTKEAFNALLKTLEEPPPRTIFVLCTTEYEKIPPTILSRCQRIVFSKLEEDLVVS 184
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L IC EE +N ++ AL IA S+G++RDA LLDQ + G+ ++ + E +GIVS
Sbjct: 185 HLFYICREEGLNCEEKALRIIARASDGAMRDALSLLDQAATYGEGNVSEQVVEEFLGIVS 244
Query: 536 DDELLDLLDLALSSDTSNTVIRAREL 561
+++ + L L L D + R R+L
Sbjct: 245 QEKVREFLLLLLEGDVDTALARLRDL 270
>gi|157150866|ref|YP_001450197.1| DNA polymerase III subunits gamma and tau [Streptococcus gordonii
str. Challis substr. CH1]
gi|262282525|ref|ZP_06060293.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA]
gi|157075660|gb|ABV10343.1| DNA-directed DNA polymerase III [Streptococcus gordonii str.
Challis substr. CH1]
gi|262261816|gb|EEY80514.1| DNA-directed DNA polymerase III [Streptococcus sp. 2_1_36FAA]
Length = 556
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 177/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSMAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTKNVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ + I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 AHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|299146823|ref|ZP_07039891.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
gi|298517314|gb|EFI41195.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
Length = 621
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|118578743|ref|YP_899993.1| DNA polymerase III subunits gamma/tau [Pelobacter propionicus DSM
2379]
gi|118501453|gb|ABK97935.1| DNA polymerase III, tau subunit [Pelobacter propionicus DSM 2379]
Length = 569
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 130/401 (32%), Positives = 197/401 (49%), Gaps = 13/401 (3%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP EL GQ V R+L +AI G V +LF G RG GKTS +RI A ALNC
Sbjct: 10 LARKYRPQTLSELTGQEHVSRTLQNAIDSGRVAHAFLFSGARGVGKTSTARILAKALNCE 69
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+PC C C + G S DV E+D D + L +A P SR+KIFII
Sbjct: 70 RGVSTEPCNTCPLCIEITKGTSTDVFEIDGASNTGVDDIRELRDNAKYLPSHSRYKIFII 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE +HV F+ T E KLP + LSR Q++ F +I I
Sbjct: 130 DEVHMLSTNAFNALLKTLEEPPEHVKFIFATTEPHKLPITILSRCQRFDFKRIPLAKIIG 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RLR+I E I+ + +AL IA K +GS+RD+ DQ L+ G ++ LIG V
Sbjct: 190 RLRQIADAEGISINDSALALIARKGDGSMRDSLTAFDQVLACCGSNVSDEDTATLIGAVD 249
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ----LISQLANLIM--DILAGKCLE 589
L ++ ++DT + R++ + Q LI QL NL++ + + +
Sbjct: 250 RRLLANISAAIFAADTQAVLAGIRQVDEVGYNLRQFCQELIEQLRNLMVVSSVRKPEEIL 309
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
D S + + + Q + R L +L + ++ + L +ALL+ ++ E +
Sbjct: 310 DLSAPELDDLRRQANGFSSQDIQRRLTLLIRADGEMAHASFPRLVLEIALLKAATLEPVI 369
Query: 650 DLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDK 690
+ + L + + G + T SPRDS VR VG++
Sbjct: 370 PIQE--LLEKLQALESGTTWTTPSPRDS----VRMPPVGEQ 404
>gi|422821399|ref|ZP_16869592.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK353]
gi|324990827|gb|EGC22762.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK353]
Length = 556
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|312869732|ref|ZP_07729879.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris
PB013-T2-3]
gi|311094781|gb|EFQ53078.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris
PB013-T2-3]
Length = 601
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 193/357 (54%), Gaps = 14/357 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDELVGQ VV ++L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDELVGQQVVTQTLKNAIVTHQISHAYLFAGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 65 HHLKDGEPCNECAICKAITHGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR Q++ F +I D
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPLTIISRVQRFDFRRISAQDAY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I ++ + +++ AL IA + G +RDA +LDQ LS ++ L A + G V
Sbjct: 185 ERMKYILDQKQVQYEEKALWVIANAAEGGMRDALSILDQVLSFSDNQVQLKDALTVTGSV 244
Query: 535 SDDELLDLLDLAL----SSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK---- 586
+ +LL+ + S+D NT+ ++++ + D + I L + I D+L +
Sbjct: 245 T-KQLLEKYFFEVTAHKSADALNTM---KDILNAGKDGQRFIEDLISFIRDVLLYQESPQ 300
Query: 587 -CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + F K ++ A L + + L+ ++++R + H +L V ++L
Sbjct: 301 LIMVESTGLTDEDFQKMSAAAPATVLYQMIDALNGIQEEMRFTTHPDVYLEVLTVKL 357
>gi|188589354|ref|YP_001922591.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum E3
str. Alaska E43]
gi|188499635|gb|ACD52771.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E3
str. Alaska E43]
Length = 546
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 193/358 (53%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I + YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPKTFNDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L+D +PC C C + G S DV E+D+ N DR+ ++ PP ++KI+I
Sbjct: 65 FNLQDGEPCNECEMCKKINEGLSMDVTELDAASNNGIDRIRDIIDDTKYPPQEGKYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L G L +LE +V+F++ T + KLP + LSR Q++ F +I +IA
Sbjct: 125 LDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRINQKEIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR+I + +N D +LD IA ++G++RD+ +LDQ +G I ++G+V
Sbjct: 185 DRLRKITEAQNVNVDDKSLDLIARVADGAMRDSLSILDQAIAMGDNNIKYDDLISILGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKID----PMQLISQLANLIMDILAGKCLE- 589
+++ L D+ + + + ++ +L+ S D LI NL+M ++ E
Sbjct: 245 TNEYLFDITNSIVDRNIEKAMVIIDKLVFSGKDIHLFIKDLIGHFRNLLMVKVSNTPEEI 304
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + ++ ++++ R ++IL E E ++SK +L ++++++ E
Sbjct: 305 LDMSLENIELIKEQGTKIRIEEIMRGIRILQEGEANSKVSKQSRLYLELSIIKMCKIE 362
>gi|77408841|ref|ZP_00785568.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae COH1]
gi|421146837|ref|ZP_15606540.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
GB00112]
gi|77172527|gb|EAO75669.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae COH1]
gi|401686544|gb|EJS82521.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
GB00112]
Length = 554
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 188/352 (53%), Gaps = 8/352 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ+V+ +L A+S ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLLAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK--ITLSLAYELIGI 533
L +I +EAI++D AL +A ++ G +RDA +LDQ L K I+L +A E+ G
Sbjct: 184 DHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHISLDVAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S + D + L+ DT+ + + + S + + L + D+L + + S
Sbjct: 244 ISLSAIDDYVSNILAHDTTEALAKLEVIFDSGKSMSRFATDLLMYLRDLLVVQAGGENSH 303
Query: 594 ARKNFFGKHTSEADM--QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F + D+ + + + +L E ++ H + + +QLS
Sbjct: 304 SSDTFMANLDVKQDILFEMIDKVTSVLPE----IKNGSHPKVYAEMMTIQLS 351
>gi|423075844|ref|ZP_17064558.1| DNA polymerase III, subunit gamma and tau [Desulfitobacterium
hafniense DP7]
gi|361853072|gb|EHL05258.1| DNA polymerase III, subunit gamma and tau [Desulfitobacterium
hafniense DP7]
Length = 554
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 184/350 (52%), Gaps = 3/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ+ V ++L +A+ + V YLF GPRGTGKT+ +++ A ALNC
Sbjct: 5 ALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
E +PC C C G + +V E+D+ D + L L S++K++I
Sbjct: 65 EHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + VVF++ T E+ K+P + LSR Q++ F +I I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIH 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
S L ++C + + AL IA KS G +RDA +LDQ LL K+ + Y+++G+V
Sbjct: 185 SHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVLGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDCS 592
++ L+D L+ D + + E + +DP Q+I +L + + L + + +
Sbjct: 245 EEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYLRQALLYASTQAFPQVA 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + ++ L + + IL + E QL+ + + + L+Q+
Sbjct: 305 PHLREHLAYQCQKLGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQV 354
>gi|442319212|ref|YP_007359233.1| DNA polymerase III subunits gamma and tau [Myxococcus stipitatus
DSM 14675]
gi|441486854|gb|AGC43549.1| DNA polymerase III subunits gamma and tau [Myxococcus stipitatus
DSM 14675]
Length = 408
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 175/350 (50%), Gaps = 5/350 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP FD++ GQ VVR++ +AI V YLF GPRG GKT+A+R+ A ALNC
Sbjct: 10 LARKWRPQKFDDMTGQEHVVRTIANAIKMDRVAHAYLFCGPRGVGKTTAARLLAKALNCE 69
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PCG C+ C ++G S DV E+D N + V + ++A P R KI+II
Sbjct: 70 KGPTATPCGECKACTEIAAGTSVDVAEIDGASNNGVENVREIRENAKYLPQRDRHKIYII 129
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L G + +L +LE HV F+ T E KLP + LSR Q+++F +I +
Sbjct: 130 DEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQRHNFRRISAARMLQ 189
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RL+ IC E +L + +S G +RDA LLDQ L+ G T E +G +
Sbjct: 190 RLQEICKAEGAGISDRSLSLVVRQSEGGMRDALSLLDQVLASCGANPTDEEVAEALGAID 249
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLEDC 591
+ D + + D + R E+ +D +L +LA +L + G+ +
Sbjct: 250 RTMVQDFAEALVHKDAKRILGRVEEVFNRGLDLKRLAEELAMQLRHLFVTKTLGEAPAEL 309
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
+E+ + +AD +L+R I+ + + + L +ALL+
Sbjct: 310 AESEQKALVALAKDADSAQLTRLFDIVHGSVWDVSRAAQPRLALEMALLK 359
>gi|383113504|ref|ZP_09934276.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. D2]
gi|313695672|gb|EFS32507.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. D2]
Length = 621
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
hafniense DCB-2]
gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
hafniense DCB-2]
Length = 554
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 184/350 (52%), Gaps = 3/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ+ V ++L +A+ + V YLF GPRGTGKT+ +++ A ALNC
Sbjct: 5 ALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
E +PC C C G + +V E+D+ D + L L S++K++I
Sbjct: 65 EHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + VVF++ T E+ K+P + LSR Q++ F +I I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIH 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
S L ++C + + AL IA KS G +RDA +LDQ LL K+ + Y+++G+V
Sbjct: 185 SHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVLGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDCS 592
++ L+D L+ D + + E + +DP Q+I +L + + L + + +
Sbjct: 245 EEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYMRQALLYASTQAFPQVA 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + ++ L + + IL + E QL+ + + + L+Q+
Sbjct: 305 PHLREHLAYQCQKLGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQV 354
>gi|376259636|ref|YP_005146356.1| DNA polymerase III subunits gamma and tau [Clostridium sp. BNL1100]
gi|373943630|gb|AEY64551.1| DNA polymerase III, subunit gamma/tau [Clostridium sp. BNL1100]
Length = 562
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 189/374 (50%), Gaps = 7/374 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++V Q VVR++ + + V YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKWRPLVFEDIVEQEHVVRTIKNTVKSERVAHAYLFCGTRGTGKTTMAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LS +D PC C C DV E+D+ N D V + P +R+K++I
Sbjct: 65 LSPKDGDPCNECEVCRGILDESILDVVEIDAASNNSVDNVREIRDEVVYAPSQARYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T + KLP + LSR Q++ F KI IA
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFDFKKITPAGIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R++ I I D IA ++G++RDA +LDQ G IT + IGIV
Sbjct: 185 ERVKVIAQASGIQIDDDGALLIARLADGALRDALSILDQCIAEGSNTITHQNVLDAIGIV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
SDD + +++D S + V +L S D ++ S L ++L K E+
Sbjct: 245 SDDFISEIVDNIESKNVEGLVADVEKLSASGRDILRFASDLVLYFRNLLICKLSTNPENI 304
Query: 592 SEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ K + K ++++ ++L +K LS E QL+ + +Q +L V L+ +S
Sbjct: 305 LDMGKQYLDKMKAQSEAFSKEQLIGIIKELSSFETQLKYALNQRVFLEVMLISISVGSYG 364
Query: 649 LDLNDSKLCLRYAH 662
D+ L R A+
Sbjct: 365 QSGGDNNLADRIAN 378
>gi|357058057|ref|ZP_09118913.1| hypothetical protein HMPREF9334_00630 [Selenomonas infelix ATCC
43532]
gi|355374364|gb|EHG21660.1| hypothetical protein HMPREF9334_00630 [Selenomonas infelix ATCC
43532]
Length = 618
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 187/364 (51%), Gaps = 7/364 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ + +L A++ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRRWRPETFADLVGQEHISHTLARAVTMGQTSHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PCG+C C + G S DV E+D+ D + L +S P + +KI+I
Sbjct: 65 VEGPTLTPCGVCDSCRSINDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPAAGHYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE V+F++ T E K+P + SR Q+Y F +I +I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPPQVLFILATTEPHKVPATIQSRCQRYDFHRITVTEIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKI-TLSLAYELIGIV 534
RL +C E I D AL IA +++G +RDA +LDQ + L + + T E +G+V
Sbjct: 185 DRLTYVCQESGITADADALGIIAVQADGGMRDALSILDQCTALAEGVLTAERVQEALGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN-----LIMDILAGKCLE 589
+ L + D + V + EL+++ + Q++++LA +I +
Sbjct: 245 GNAWTQKLAEQIAERDAAGLVTQLGELLQNGRELKQILAELAQYFRSLMIAGVGGALSAA 304
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL-SSSESS 648
+ +E + + + ++ L+ L+ET +++R + + L+ L SE +
Sbjct: 305 ELTEGQADDLRETAVRFTQDEIMAILQTLNETMQEIRSAPQPRIAVEAMLIGLCRPSEGT 364
Query: 649 LDLN 652
+++
Sbjct: 365 VEVT 368
>gi|221307828|ref|ZP_03589675.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312150|ref|ZP_03593955.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317083|ref|ZP_03598377.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321346|ref|ZP_03602640.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767015|ref|NP_387900.2| DNA polymerase III subunits gamma and tau [Bacillus subtilis subsp.
subtilis str. 168]
gi|402774262|ref|YP_006628206.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis QB928]
gi|452916655|ref|ZP_21965275.1| DNA polymerase III, subunit gamma and tau [Bacillus subtilis
MB73/2]
gi|239938906|sp|P09122.3|DPO3X_BACSU RecName: Full=DNA polymerase III subunit gamma/tau
gi|225184642|emb|CAB11795.2| DNA polymerase III (gamma and tau subunits) [Bacillus subtilis
subsp. subtilis str. 168]
gi|402479448|gb|AFQ55957.1| DNA polymerase III (gamma and tau subunits) [Bacillus subtilis
QB928]
gi|407955710|dbj|BAM48950.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis
BEST7613]
gi|407962981|dbj|BAM56220.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis
BEST7003]
gi|452114434|gb|EME04836.1| DNA polymerase III, subunit gamma and tau [Bacillus subtilis
MB73/2]
Length = 563
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 197/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +L+ IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + + Q L + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ DL + + ++
Sbjct: 365 AADLPEVDMLMK 376
>gi|346311272|ref|ZP_08853280.1| DNA polymerase III [Collinsella tanakaei YIT 12063]
gi|345901217|gb|EGX71022.1| DNA polymerase III [Collinsella tanakaei YIT 12063]
Length = 420
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 193/372 (51%), Gaps = 20/372 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP F+ +VGQ +V +L A++ G ++ YLF GPRGTGKT+ +RI A AL C
Sbjct: 3 SLYRKYRPLTFESVVGQQHIVSTLQHAVTEGRLSHAYLFCGPRGTGKTTMARILAKALLC 62
Query: 356 LSLEDQKPC---GLCRECALFSSGRSRDVKEVDSVRINRSDRV-GSLMKSAFLPPFSSRF 411
+ C G C EC + G DV E+D+ D V ++ S P +
Sbjct: 63 QKAQGDHGCMPDGTCPECEAIAEGAHPDVYELDAASRTGVDSVREEIINSVNFAPVRGTY 122
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K++IIDE +L + + +L +LE HVVFV+ T + KL + LSR Q++ F +I +
Sbjct: 123 KVYIIDEVHMLTTQAFNALLKTLEEPPSHVVFVLCTTDPQKLLDTILSRCQRFDFHRISN 182
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYEL 530
DI +R+R +C +E ++D+ AL+ +A + G +RDA L+QLS+ G + L+ A L
Sbjct: 183 EDILARMRYVCEQEGFSYDEEALEIVAKHARGGMRDALSTLEQLSVFGGGSVRLADARSL 242
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDP----MQLISQLANLIMDI---- 582
+G VS L S S V+ L+R+++D M+L L + D+
Sbjct: 243 LGEVSSTILAQF----ASGIASRDVVELFGLVRTQVDEGNDLMELTRDLVGHVRDVYTAF 298
Query: 583 LAGKCLE--DCSEARKNFFGKHTSE-ADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
+AG E DC+ + S + +L+R L +L + ++R + L +AL
Sbjct: 299 VAGAKPELLDCTPEEAAALKEEASLFENADRLARVLTVLDDAALEMRNASDMRLVLEIAL 358
Query: 640 LQLSSSESSLDL 651
+L+ ES L L
Sbjct: 359 TRLARPESDLTL 370
>gi|288904969|ref|YP_003430191.1| DNA polymerase III subunits gamma and tau [Streptococcus
gallolyticus UCN34]
gi|386337418|ref|YP_006033587.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
gi|288731695|emb|CBI13256.1| DNA polymerase III, gamma and tau subunits [Streptococcus
gallolyticus UCN34]
gi|334280054|dbj|BAK27628.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 559
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 165/290 (56%), Gaps = 2/290 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPTTILSRVQRFEFKAIKLAAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
L I +E I++++ AL IA + G +RDA +LDQ LSL ++L++A E+ G
Sbjct: 184 EHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNHVSLAIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+S L D + L++ TS + + S + + L N + D+L
Sbjct: 244 ISMTALDDFVANVLANQTSQALANLETIFDSGKSMNRFATDLLNYLRDLL 293
>gi|347751633|ref|YP_004859198.1| DNA polymerase III subunits gamma and tau [Bacillus coagulans 36D1]
gi|347584151|gb|AEP00418.1| DNA polymerase III, subunits gamma and tau [Bacillus coagulans
36D1]
Length = 563
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 186/373 (49%), Gaps = 7/373 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ V ++L A+ + T YLF GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRTWRPQRFADVVGQEHVTKTLQHALLQQKTTHAYLFSGPRGTGKTSAAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C + G DV E+D+ D + + P ++K++I
Sbjct: 65 EHAPTGEPCNECAVCRGITDGTIPDVIEIDAASNTGVDDIRDIRDKVKYAPSVVKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRCQRFDFKRITSRDIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL I E I +D+ AL+ IA + G +RDA LLDQ +S K+ + A + G +
Sbjct: 185 KRLAYIAGETGIAYDEQALNIIAHAAEGGMRDALSLLDQAVSFSEGKVRVEDALTVTGSI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S ++ L D + + L++ DP +L+ D+L K EA
Sbjct: 245 SQNDFTRLAQAIQKKDAAECLDLVGSLLQQGKDPSRLVEDFILYFRDLLLYKTAPQMEEA 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ F + + Q++ R + IL++T++ +R S +L VA ++L E +
Sbjct: 305 VQRVYLDEAFKEMSRSLQTQEIYRFIDILNQTQQDMRFSNMARVYLEVAFIKL-CEEKAP 363
Query: 650 DLNDSKLCLRYAH 662
D ++ L + A
Sbjct: 364 DPGENDLVRKLAE 376
>gi|160886339|ref|ZP_02067342.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483]
gi|237723209|ref|ZP_04553690.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
gi|423289507|ref|ZP_17268357.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL02T12C04]
gi|156108224|gb|EDO09969.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus ATCC
8483]
gi|229447731|gb|EEO53522.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
gi|392667218|gb|EIY60728.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL02T12C04]
Length = 621
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|293372713|ref|ZP_06619095.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
CMC 3f]
gi|292632522|gb|EFF51118.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
CMC 3f]
Length = 621
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|467409|dbj|BAA05255.1| DNA polymerase III subunit [Bacillus subtilis]
gi|580914|emb|CAA34877.1| dnaZX [Bacillus subtilis]
Length = 563
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 197/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +L+ IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + + Q L + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ DL + + ++
Sbjct: 365 AADLPEVDMLMK 376
>gi|386756599|ref|YP_006229815.1| DNA polymerase III subunits gamma and tau [Bacillus sp. JS]
gi|384929881|gb|AFI26559.1| DNA polymerase III subunits gamma and tau [Bacillus sp. JS]
Length = 563
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 196/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +LD IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLLDQAVSFSGDVLKVEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + Q + + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRGLSEQIPAQAIYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ DL + + ++
Sbjct: 365 AADLPEVDMLMK 376
>gi|386582597|ref|YP_006079001.1| DNA polymerase III subunits gamma and tau [Streptococcus suis SS12]
gi|353734743|gb|AER15753.1| DNA polymerase III subunits gamma and tau [Streptococcus suis SS12]
Length = 555
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 144/242 (59%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ VV +L AI +G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G DV E+D+ N D + + + P + +K++
Sbjct: 64 PNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLATYKVYT 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKVTDIQ 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIGI 533
L I +E + FD+ AL IA ++ G +RDA +LDQ LSL +++TL +A E+ G
Sbjct: 184 EHLAAILTKEGLIFDEQALTIIARRAEGGMRDALSILDQALSLSQDQQVTLEIAEEITGS 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|336063958|ref|YP_004558817.1| DNA polymerase III subunit gamma/tau [Streptococcus pasteurianus
ATCC 43144]
gi|334282158|dbj|BAK29731.1| DNA polymerase III subunit gamma/tau [Streptococcus pasteurianus
ATCC 43144]
Length = 559
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 165/290 (56%), Gaps = 2/290 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ V+ +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVISSTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
L I +E I++++ AL IA + G +RDA +LDQ LSL ++L++A E+ G
Sbjct: 184 EHLANILDKEEISYEEDALTLIAHCAEGGMRDALSILDQALSLTPDNHVSLAIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+S L D + L++ TS + + S + + L N + D+L
Sbjct: 244 ISMTALDDFVANVLANQTSQALTNLETIFDSGKSMSRFATDLLNYLRDLL 293
>gi|257867899|ref|ZP_05647552.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257874228|ref|ZP_05653881.1| DNA polymerase III [Enterococcus casseliflavus EC10]
gi|257876792|ref|ZP_05656445.1| DNA polymerase III [Enterococcus casseliflavus EC20]
gi|257801982|gb|EEV30885.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257808392|gb|EEV37214.1| DNA polymerase III [Enterococcus casseliflavus EC10]
gi|257810958|gb|EEV39778.1| DNA polymerase III [Enterococcus casseliflavus EC20]
Length = 577
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 191/358 (53%), Gaps = 5/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 9 ALYRVWRSQRFDDVVGQKAITQTLKNAIDQNQISHAYLFTGPRGTGKTSAAKIFAKAINC 68
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 69 PNQVNGEPCNECDMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTQAEYKVYI 128
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++VVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 129 IDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRTQRFDFKRINTQDIV 188
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L + IN++ AL IA + G +RDA + DQ ++ +T A E+ G +
Sbjct: 189 GHLETVLTTSEINYEAEALQIIARAAEGGMRDALSITDQAIAFSDGTVTTQDALEVTGSL 248
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
S + + L+ + ++ + REL+ S + +L+ L +L+M A + L +
Sbjct: 249 SYEMMDRLMQACGEKEVADALATLRELLASGKEARRLLENLLVYCRDLLMYQQAPQLLSE 308
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
S F K+ + +L++T+ ++R + + T +L VA+++L++ S
Sbjct: 309 KSLQLTEAFQTLAKNTPPAKIYHWITVLNDTQNEVRFTNNPTIYLEVAVVKLANDPES 366
>gi|262409631|ref|ZP_06086171.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
gi|294647112|ref|ZP_06724716.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
2a]
gi|294807901|ref|ZP_06766682.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens SD CC 1b]
gi|345509527|ref|ZP_08789123.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
gi|229447047|gb|EEO52838.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
gi|262352484|gb|EEZ01584.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
gi|292637529|gb|EFF55943.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
2a]
gi|294444899|gb|EFG13585.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens SD CC 1b]
Length = 621
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|206890696|ref|YP_002248894.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742634|gb|ACI21691.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 512
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/351 (32%), Positives = 178/351 (50%), Gaps = 5/351 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F +L GQ+VV++ L +++ G ++ Y+F GP+G GKTS +RI A ALNC+
Sbjct: 6 LARKYRPQKFSDLTGQDVVIKILQNSLQTGKISHAYVFSGPKGVGKTSTARILAKALNCI 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
++ KPC C C GR+ V E+D+ + + L ++ +K++II
Sbjct: 66 DSQN-KPCDKCPSCVAIKEGRAMSVIEIDAASHTSVENIRDLRENIRYASAEGFYKVYII 124
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HVVFV+ T E K+P + LSR Q F +I I
Sbjct: 125 DEAHMLSQSAFNAFLKTLEEPPPHVVFVLATTEPRKIPLTVLSRCQHLQFKRIPINLIKQ 184
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
RL+ IC +E IN + AL IA+ S GS+RDA +LDQ++ + +T LIG
Sbjct: 185 RLQFICNQENINATEEALYTIASNSEGSMRDALTMLDQVTSFTENVTQDNVNLLIGGTDV 244
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED----CS 592
+ L +L + + + +++ EL D +L+ L N I + L K + S
Sbjct: 245 NVLYELTECLIDGNREKIILKVEELNNFGTDFKRLVGDLINFIRNTLISKITKSFKLYIS 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E+ + K + + L LK L +E +R S + LL+LS
Sbjct: 305 ESEASLIEKLNKKTSEEHLVVLLKELINSEFAIRSSFFPRVIFEITLLKLS 355
>gi|254973666|ref|ZP_05270138.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-66c26]
gi|255091057|ref|ZP_05320535.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
CIP 107932]
gi|255312711|ref|ZP_05354294.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-76w55]
gi|255515471|ref|ZP_05383147.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-97b34]
gi|255648563|ref|ZP_05395465.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-37x79]
gi|260681785|ref|YP_003213070.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
CD196]
gi|260685382|ref|YP_003216515.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
R20291]
gi|306518692|ref|ZP_07405039.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-32g58]
gi|384359335|ref|YP_006197187.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
BI1]
gi|260207948|emb|CBA60069.1| DNA polymerase III subunit gamma/tau [Clostridium difficile CD196]
gi|260211398|emb|CBE01472.1| DNA polymerase III subunit gamma/tau [Clostridium difficile R20291]
Length = 545
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 190/355 (53%), Gaps = 7/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F++++GQ+ ++++L + I + YLF G RGTGKTS ++IF+ A+NC
Sbjct: 4 ALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +++PC C C + DV E+D+ N D + L +S P ++++K++I
Sbjct: 64 LNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F ++ D+
Sbjct: 124 IDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKDMT 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
R+++IC +E I+ D AL+ IA S G++RDA +LDQ G+ KI EL+G V
Sbjct: 184 LRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ ++L +L + DT ++ E + D LI+ L + +++ K +
Sbjct: 244 NIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNLMVCKVSSELDEI 303
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E + D+ L R L ILS T+ ++ S + + + +++++
Sbjct: 304 ISLPEETIEQLKIQSKNIDINDLIRILNILSITQDDIKSSSNPRVLVEITIMKIA 358
>gi|336414606|ref|ZP_08594952.1| hypothetical protein HMPREF1017_02060 [Bacteroides ovatus
3_8_47FAA]
gi|335933718|gb|EGM95720.1| hypothetical protein HMPREF1017_02060 [Bacteroides ovatus
3_8_47FAA]
Length = 621
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|315650373|ref|ZP_07903444.1| DNA polymerase III, gamma/tau subunit DnaX [Lachnoanaerobaculum
saburreum DSM 3986]
gi|419719498|ref|ZP_14246775.1| DNA polymerase III, subunit gamma and tau [Lachnoanaerobaculum
saburreum F0468]
gi|315487300|gb|EFU77611.1| DNA polymerase III, gamma/tau subunit DnaX [Lachnoanaerobaculum
saburreum DSM 3986]
gi|383304271|gb|EIC95679.1| DNA polymerase III, subunit gamma and tau [Lachnoanaerobaculum
saburreum F0468]
Length = 515
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 194/366 (53%), Gaps = 12/366 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ FDE+VGQ + ++L + + G V+ YLF G RGTGKTS ++I A ALNC
Sbjct: 5 ALYRKFRPSNFDEVVGQEAITKTLKNQLRTGRVSHAYLFCGTRGTGKTSIAKIMARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PC C C + S +V E+D+ N D + + + PP R+K+FI
Sbjct: 65 EHPTEAGPCNECPTCKSILNETSINVVEIDAASNNGVDNIRDIKEQVQYPPTFGRYKVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L G + +L +LE Q+V+F++ T E+ K+P + LSR Q+Y F +I I+
Sbjct: 125 IDEVHMLSGGAFNALLKTLEEPPQYVIFILATTEVHKIPVTVLSRCQRYDFKRIGIDTIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
RL+ +C E ++ + A+D+IA ++G++RDA LLD+ +S L +KIT +++G
Sbjct: 185 QRLKTLCKSEGVDIEDRAVDYIAKAADGAMRDALSLLDECISFLQNEKITFDAVLDILG- 243
Query: 534 VSDDELLD-LLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------ 586
SD + + LLD + +T + + + + Q ++ + +IL K
Sbjct: 244 ASDISIFNKLLDDIIDGNTVEVLNILNDAIVDGKEIGQFVTDFLWYLRNILILKSTNNDS 303
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS- 645
L D S+ + + L R ++ LSE +L+ + + + +++ +
Sbjct: 304 SLVDMSQQNLQNLKEKADAVSKETLMRYIRNLSELSNKLKYASQKRVVAELEFIRIMTPQ 363
Query: 646 -ESSLD 650
E++LD
Sbjct: 364 MENNLD 369
>gi|251772822|gb|EES53382.1| DNA polymerase III, subunits gamma and tau [Leptospirillum
ferrodiazotrophum]
Length = 576
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 157/290 (54%), Gaps = 3/290 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL++ +RP F +L+GQ VVRSL +S G++T YLF G RG GKT+ +RI A A+NC
Sbjct: 6 SLARLYRPRTFSDLIGQEAVVRSLTRGLSSGVMTQAYLFSGERGVGKTTVARILAKAINC 65
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
S PC C C + GRS DV E+D D V +L +S P +SR +I I
Sbjct: 66 QSGPTATPCLECSSCLEIAEGRSPDVTEMDGASHTGVDDVRTLRESLVYAPLTSRSRIVI 125
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E K+P + LSR Q + F + I+
Sbjct: 126 IDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHKIPDTVLSRCQHFRFRLLTVSQIS 185
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +C E I+ + +A + GS+RDA LLDQ L G+ +T + +L+G V
Sbjct: 186 DRILHVCRSENISLNPTVTGMVARAAEGSLRDALSLLDQLLRTGGESLTPADVADLLG-V 244
Query: 535 SDDELLD-LLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+D L + +L L D S T+ AR + + +DP + LA DIL
Sbjct: 245 TDHALEEKMLAAILLGDLSATLRTARTALDTGVDPRAQVRSLARRFRDIL 294
>gi|295087965|emb|CBK69488.1| DNA polymerase III, tau subunit [Bacteroides xylanisolvens XB1A]
Length = 621
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLMQVA 360
>gi|259502691|ref|ZP_05745593.1| DNA polymerase III [Lactobacillus antri DSM 16041]
gi|259169336|gb|EEW53831.1| DNA polymerase III [Lactobacillus antri DSM 16041]
Length = 598
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 189/353 (53%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDELVGQ VV ++L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDELVGQQVVTQTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C ++G+ DV E+D+ N + + + A P + +K++I
Sbjct: 65 HHLKDGEPCNECEICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR Q++ F +I D
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISAQDAY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I ++ + +++ AL IA + G +RDA +LDQ LS ++ L A + G V
Sbjct: 185 ERMKYILDQKQVQYEEKALWVIANAAEGGMRDALSILDQVLSFSDNQVQLKDALTVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLE 589
+ L + +++ + ++++ + D + I L + I D+L + +
Sbjct: 245 TKQLLEKYFFEVTAHQSADALNTMKDILNAGKDGQRFIEDLISFIRDVLLYQESPKLIMV 304
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + F K ++ A L + + L+ ++++R + H +L V ++L
Sbjct: 305 ESTGLTDEDFQKMSAAAPATVLYQMIDALNGIQEEMRFTTHPDVYLEVLTVKL 357
>gi|336407150|ref|ZP_08587784.1| hypothetical protein HMPREF0127_05097 [Bacteroides sp. 1_1_30]
gi|423216289|ref|ZP_17202814.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens CL03T12C04]
gi|335948251|gb|EGN09968.1| hypothetical protein HMPREF0127_05097 [Bacteroides sp. 1_1_30]
gi|392691140|gb|EIY84391.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens CL03T12C04]
Length = 621
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|298482983|ref|ZP_07001165.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
gi|298270955|gb|EFI12534.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
Length = 621
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 188/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|156742265|ref|YP_001432394.1| DNA polymerase III subunits gamma and tau [Roseiflexus castenholzii
DSM 13941]
gi|156233593|gb|ABU58376.1| DNA polymerase III, subunits gamma and tau [Roseiflexus
castenholzii DSM 13941]
Length = 644
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 186/352 (52%), Gaps = 6/352 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++R FDEL+GQ VVR+L +AI+ G V YLF GPRG GKT+ +R+ A A+NC
Sbjct: 5 ALYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ ++PCG+C C + GR+ DV E+D+ + +++ P +R K++I
Sbjct: 65 TAPPAERPCGVCESCRSIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPAVARTKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E+ K+P + LSR Q++ F + IA
Sbjct: 125 IDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHTVASIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIV 534
+ LR I +E + + A + IA + GS+RDA +LDQL + G ++L L+G
Sbjct: 185 AHLRMIATQEGVTLEPGAAEAIARAATGSMRDALSVLDQLMAYGGGTVSLEQVRNLLGAS 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN---LIMDILAG--KCLE 589
E+ L+D +++D + ++ + D Q L +M I AG + L
Sbjct: 245 EMQEVTTLVDALIAADLPGALRVVADVAAAGADLRQFTRDLVERLRALMLICAGADRSLL 304
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
D +E + + L R +K+ SE + QLR+S + L +A+++
Sbjct: 305 DVAEEEAAQIERQARTVSLGDLMRWVKLFSELDYQLRISSYGQLPLELAVIE 356
>gi|423080911|ref|ZP_17069525.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
002-P50-2011]
gi|423086357|ref|ZP_17074764.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
050-P50-2011]
gi|357547150|gb|EHJ29046.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
050-P50-2011]
gi|357551861|gb|EHJ33643.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
002-P50-2011]
Length = 545
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 190/355 (53%), Gaps = 7/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F++++GQ+ ++++L + I + YLF G RGTGKTS ++IF+ A+NC
Sbjct: 4 ALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +++PC C C + DV E+D+ N D + L +S P ++++K++I
Sbjct: 64 LNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F ++ D+
Sbjct: 124 IDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKDMT 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
R+++IC +E I+ D AL+ IA S G++RDA +LDQ G+ KI EL+G V
Sbjct: 184 LRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ ++L +L + DT ++ E + D LI+ L + +++ K +
Sbjct: 244 NIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNLMVCKVSSELDEI 303
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E + D+ L R L ILS T+ ++ S + + + +++++
Sbjct: 304 ISLPEETIEQLKIQSKNIDINDLIRILNILSITQDDIKSSSNPRVLVEITIMKIA 358
>gi|126697582|ref|YP_001086479.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
630]
gi|255099173|ref|ZP_05328150.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-63q42]
gi|255654098|ref|ZP_05399507.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-23m63]
gi|296452477|ref|ZP_06894176.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
NAP08]
gi|296878245|ref|ZP_06902255.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
NAP07]
gi|423089329|ref|ZP_17077690.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
70-100-2010]
gi|115249019|emb|CAJ66830.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
630]
gi|296258683|gb|EFH05579.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
NAP08]
gi|296430753|gb|EFH16590.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
NAP07]
gi|357558319|gb|EHJ39816.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
70-100-2010]
Length = 545
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 190/355 (53%), Gaps = 7/355 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F++++GQ+ ++++L + I + YLF G RGTGKTS ++IF+ A+NC
Sbjct: 4 ALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +++PC C C + DV E+D+ N D + L +S P ++++K++I
Sbjct: 64 LNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F ++ D+
Sbjct: 124 IDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKDMT 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
R+++IC +E I+ D AL+ IA S G++RDA +LDQ G+ KI EL+G V
Sbjct: 184 LRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELMGSV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+ ++L +L + DT ++ E + D LI+ L + +++ K +
Sbjct: 244 NIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDLIDHFRNLMVCKVSSELDEI 303
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
E + D+ L R L ILS T+ ++ S + + + +++++
Sbjct: 304 ISLPEETIEQLKIQSKNIDINDLIRILNILSITQDDIKSSSNPRVLVEITIMKIA 358
>gi|392423473|ref|YP_006464467.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus
acidiphilus SJ4]
gi|391353436|gb|AFM39135.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus
acidiphilus SJ4]
Length = 563
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 181/337 (53%), Gaps = 5/337 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +VGQ + R+L++A+ + + YLF GPRGTGKT+A++I A ALNC
Sbjct: 5 ALYREWRPKTFQNIVGQEHITRTLMNALKQNKIAHAYLFSGPRGTGKTTAAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C G + +V E+D+ D + L ++ L RFK++I
Sbjct: 65 EQRIDVEPCNQCSSCLSIDHGSAIEVFEIDAASNRGIDEIRDLRENIKLSSIEGRFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE VVF++ T E+ K+P + LSR Q++ F +I +I+
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPPQVVFILATTEVQKIPLTILSRVQRFEFHRISVENIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
SRL +C N AL IA KS G +RDA +LDQ L I + Y+++G+V
Sbjct: 185 SRLTLVCESLGRNILPGALQVIAQKSEGGLRDALSILDQCLLQDDPIGVKEVYQVLGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLAN----LIMDILAGKCLEDC 591
+ +L++ ++ D ++ + ++ DP Q+I +L + +++++ G
Sbjct: 245 ETFSSELVESLMTLDYGKSLAILTDGIQQGRDPRQIIRELLDYLRQMLLNVTTGAAPLVA 304
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMS 628
E ++ K + + + +L + +L + E QL+ +
Sbjct: 305 PEIQERLV-KQSEQVPISRLLHWISLLMQGEGQLKYA 340
>gi|339301690|ref|ZP_08650780.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
agalactiae ATCC 13813]
gi|417005101|ref|ZP_11943694.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
FSL S3-026]
gi|319744863|gb|EFV97199.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
agalactiae ATCC 13813]
gi|341576914|gb|EGS27322.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
FSL S3-026]
Length = 554
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 188/352 (53%), Gaps = 8/352 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ+V+ +L A+S ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLLAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK--ITLSLAYELIGI 533
L +I +EAI++D AL +A ++ G +RDA +LDQ L K I+L +A E+ G
Sbjct: 184 DHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHISLDVAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S + D + L+ DT+ + + + S + + L + D+L + + S
Sbjct: 244 ISLSAIDDYVSNILAHDTTEALAKLEVIFDSGKSMSRFATDLLMYLRDLLVVQAGGENSH 303
Query: 594 ARKNFFGKHTSEADM--QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F + D+ + + + +L E ++ H + + +QLS
Sbjct: 304 SSDTFMANLDVKQDILFEMIDKVTSVLPE----IKNGSHPKVYAEMMTIQLS 351
>gi|325105012|ref|YP_004274666.1| DNA polymerase III subunits gamma and tau [Pedobacter saltans DSM
12145]
gi|324973860|gb|ADY52844.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM
12145]
Length = 605
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 186/361 (51%), Gaps = 7/361 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ + +L +AI + +LF GPRG GKT+ +RI A +NC +
Sbjct: 8 ARKYRPVTFESVVGQLHITNTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKTINCQN 67
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L Q + CG+C C F G S + E+D+ N D + +L+ +PP ++K++II
Sbjct: 68 LTAQGEACGICESCNSFLHGNSFNFHELDAASNNSVDDIRNLIDQVRIPPQGGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE + +F++ T E K+ + LSR Q + F +IK D+A
Sbjct: 128 DEVHMLSQSAFNAFLKTLEEPPAYAIFILATTEKHKILPTILSRCQIFDFNRIKVEDMAG 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L +I E I FD L IA K++G +RDA + DQ+ S + I+ + + I+
Sbjct: 188 HLSKIATREEITFDNDGLHLIAQKADGGLRDALSMFDQIASFSNRNISYQAVIDNLNILD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D L D DT++T++ E++ + D IS LA+ ++L K L +
Sbjct: 248 YDYYFKLTDFLNQEDTASTLLLFNEILNNGFDGNHFISGLASHFRNVLICKDPSTVQLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
SE K + + L AL I ++ + ++SK+Q + +AL++++ + +
Sbjct: 308 VSENIKQKYLDQSKATSSSFLISALNIANQCDLNYKISKNQRLQVELALIKIAHLQQAFS 367
Query: 651 L 651
L
Sbjct: 368 L 368
>gi|434389609|ref|YP_007100220.1| DNA polymerase III, subunit gamma/tau [Chamaesiphon minutus PCC
6605]
gi|428020599|gb|AFY96693.1| DNA polymerase III, subunit gamma/tau [Chamaesiphon minutus PCC
6605]
Length = 706
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 188/354 (53%), Gaps = 8/354 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F +LVGQ + +L +A+ + YLF GPRGTGKTS++RI A +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQEAISTTLTNALRLEKIAPAYLFTGPRGTGKTSSARILAKSLNCM 65
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + +PCG C C+ + G + D+ E+D+ D + L++ A P R+K++
Sbjct: 66 ASDVPTAQPCGKCETCSAIAVGAALDIIEIDAASNTGVDNIRELIERAQYAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDEC +L + ++L +LE VVFV+ T + ++ + +SR Q++ + +I +
Sbjct: 126 IIDECHMLTTAAFNSLLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDYRRIPVEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I E+I D A++ IA + G +RDAE LLD+LSLL +IT Y+ IG V
Sbjct: 186 VKHLTYIAGNESIEIDAASIKLIAQIAQGGLRDAESLLDRLSLLSGEITPDRVYDAIGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE---DC 591
+ +LLD+L +D + R R+++ +P+ ++ LA D+ K D
Sbjct: 246 PERDLLDILQSIDRADPEQLLDRTRQILERGKEPLTVLQNLAGCYRDLTIAKTAPQRADL 305
Query: 592 SEARKNFFGKHTSEADMQKLSRAL---KILSETEKQLRMSKHQTTWLTVALLQL 642
+ + A +LS+ L K L ++E QL+ + WL +A+L L
Sbjct: 306 VALTSESWTELAKIAKTWQLSQILTGQKHLKDSEIQLKHTTQPQLWLEIAILGL 359
>gi|153854738|ref|ZP_01995972.1| hypothetical protein DORLON_01970 [Dorea longicatena DSM 13814]
gi|149752645|gb|EDM62576.1| DNA polymerase III, subunit gamma and tau [Dorea longicatena DSM
13814]
Length = 523
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 187/355 (52%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ F+++ GQ+ +VR+L + I+ + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPDEFEDVKGQDAIVRTLKNQINADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C ++G S +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVDGSPCGECAMCKSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRISIETIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS--LLGKKITLSLAYELIGI 533
+RLR + +E + + A+ +IA ++GS+RD+ LLDQ + + + +T E++G
Sbjct: 185 ARLRELIDKEGWDVEDKAVRYIAKMADGSMRDSLSLLDQCAAFYMNETLTYDHVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V + LL L+ D + EL+ + QL + + ++L K +ED
Sbjct: 245 VDTEVFSRLLRQLLAMDVHQVIETVDELVMQGRELSQLAADFTWYLRNLLLVKSSDNMED 304
Query: 591 CSEARKNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ EA M L R ++I S+ QL+ + + L V L++L
Sbjct: 305 VLDVSSENLALLKEEAQMIDSDTLIRYIRIFSDLTNQLKYATQKRVLLEVTLIKL 359
>gi|22536992|ref|NP_687843.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
2603V/R]
gi|25010901|ref|NP_735296.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
NEM316]
gi|76787118|ref|YP_329574.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
A909]
gi|76798944|ref|ZP_00781147.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21]
gi|77405538|ref|ZP_00782629.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae H36B]
gi|77410726|ref|ZP_00787085.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae CJB111]
gi|77413110|ref|ZP_00789310.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae 515]
gi|406709317|ref|YP_006764043.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
GD201008-001]
gi|424049609|ref|ZP_17787160.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
ZQ0910]
gi|22533847|gb|AAM99715.1|AE014229_16 DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae 2603V/R]
gi|23095280|emb|CAD46490.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562175|gb|ABA44759.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae A909]
gi|76585711|gb|EAO62266.1| DNA polymerase III subunits gamma [Streptococcus agalactiae 18RS21]
gi|77160811|gb|EAO71922.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae 515]
gi|77163262|gb|EAO74214.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae CJB111]
gi|77175845|gb|EAO78623.1| DNA polymerase III, gamma and tau subunits [Streptococcus
agalactiae H36B]
gi|389648882|gb|EIM70371.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
ZQ0910]
gi|406650202|gb|AFS45603.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
GD201008-001]
Length = 554
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 188/352 (53%), Gaps = 8/352 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ+V+ +L A+S ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQSVISTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQINGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLLAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK--ITLSLAYELIGI 533
L +I +EAI++D AL +A ++ G +RDA +LDQ L K I+L +A E+ G
Sbjct: 184 DHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHISLDVAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S + D + L+ DT+ + + + S + + L + D+L + + S
Sbjct: 244 ISLSAIDDYVSNILAHDTTEALAKLEVIFDSGKSMSRFATDLLMYLRDLLVVQAGGEDSH 303
Query: 594 ARKNFFGKHTSEADM--QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F + D+ + + + +L E ++ H + + +QLS
Sbjct: 304 SSDTFIANLNVKQDILFEMIDKVTSVLPE----IKNGSHPKVYAEMMTIQLS 351
>gi|373108092|ref|ZP_09522383.1| DNA polymerase III, subunit gamma and tau [Stomatobaculum longum]
gi|371650258|gb|EHO15726.1| DNA polymerase III, subunit gamma and tau [Stomatobaculum longum]
Length = 531
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 187/366 (51%), Gaps = 14/366 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FDE+ GQ+ V +L + I G V YLF G RGTGKTS ++I A A+NC
Sbjct: 5 ALYRKWRPKNFDEVKGQDAVCTALRNQIETGRVGHAYLFCGTRGTGKTSVAKIMARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + PCG+C C S S +V+E+D+ N D + + + PP ++++FI
Sbjct: 65 ENPVNGNPCGVCASCRAILSESSMNVQEIDAASNNGVDNIRDIKEQVQYPPTDGKYRVFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E ++P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPSYVIFILATTEQSRIPVTVLSRCQRYDFRRITTDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
+RL + E I ++AAL +IAA+++G++RDA LLD+ +I ++G
Sbjct: 185 ARLTELASAEHIQAEEAALRYIAAQADGAMRDALSLLDECVAFCPDGEIRYEAVLNILGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTV-------IRARELMRSKIDPMQLISQLANLIMDILA-- 584
V + L L T + + REL + D + L NL++ A
Sbjct: 245 VDVEVFSKLFRALLYGKTGEALALLNRAFLEGRELGQFNAD---FLWYLRNLLVLKTAEH 301
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ L D + R A+ L RA+++ +E +QLR + + T +AL++L+
Sbjct: 302 AEGLVDSAGERLQLLRADAELANKAVLLRAIRVQAELSQQLRYASDKRTLTELALIRLAE 361
Query: 645 SESSLD 650
E D
Sbjct: 362 PEMDTD 367
>gi|182418736|ref|ZP_02950009.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum 5521]
gi|237669676|ref|ZP_04529653.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182377430|gb|EDT74986.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum 5521]
gi|237654750|gb|EEP52313.1| DNA polymerase III subunit gamma/tau [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 555
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 200/359 (55%), Gaps = 9/359 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FD++VGQ + +L + I + YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPKTFDDVVGQEHITTTLKNEIINDRIAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+LE+ +PC C C + G + DV E+D+ N D++ ++ PP +++K++I
Sbjct: 65 LNLENGEPCNECEMCKKINEGLAIDVTELDAASNNGIDKIRDIIDDTKYPPQEAKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE ++V+F++ T + KLP + LSR Q++ F +I +++
Sbjct: 125 MDEVHMLSVGAVNAFLKTLEEPPKNVIFILATTDPQKLPITILSRCQRFDFKRINHKEVS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
+RLRRI + I+ + +LD IA +G++RDA +LDQ +G+ +I + ++G+V
Sbjct: 185 ARLRRITEAQNIDCEDKSLDLIARVCDGAMRDALSILDQAIAMGENEIDYNDLVSILGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ-----LISQLANLIMDILAGKCLE 589
+++ L D+ + + + ++I +L+ S D MQ LI+ NL+M + E
Sbjct: 245 TNEYLFDITNSIIERNIEKSMIIVDKLVYSGKD-MQLFIKDLIAHFRNLLMIKVTTNPEE 303
Query: 590 --DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + ++++ R ++IL E E +MSK +L ++++++ E
Sbjct: 304 VLDMSLENITLVREQGRKIRVEEIMRDIRILQEAEANSKMSKQSRLYLELSIIKMCKIE 362
>gi|374855260|dbj|BAL58121.1| DNA polymerase III subunit gamma/tau [uncultured Acidobacteria
bacterium]
Length = 550
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 183/360 (50%), Gaps = 10/360 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
+++K+RP F++LVGQ + R+L +A+ Y+F GPRG GKT+ +R+FA ALNC+
Sbjct: 5 IARKWRPQRFEDLVGQEAIARTLQNALRYRRWHHAYIFAGPRGVGKTTTARLFAKALNCV 64
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGS-LMKSAFLPPFSSRFKIFI 415
+PC C C G + DV E+D+ D V ++ + L P R++IFI
Sbjct: 65 QGPTPEPCNECPPCREIVQGNALDVLEIDAASHTGVDNVRQVILDTLALGPARDRYRIFI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDEC L + +L +LE HV+F+M T EL K+P + LSR Q + F I +G IA
Sbjct: 125 IDECHQLSTSAFNALLKTLEEPPPHVLFLMATTELHKVPATILSRCQIFEFRLIPEGKIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ---LSLLGKKITLSLAYELIG 532
RLRRI E I +AL IA GS+RDA+ LL+Q + G+ I+ + +G
Sbjct: 185 ERLRRIADAEGIAISDSALRRIARAGQGSLRDAQSLLEQAVSFAGPGEPISDEVVTAALG 244
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ----LISQLANLIMDILAGKCL 588
++ + LL + D + + +EL D L++ NL++ + G+
Sbjct: 245 LIGTETLLLAAEAIADRDGARLLRLVQELSERGYDLRHFCRDLMAHFRNLLVAKVIGRDR 304
Query: 589 E--DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
E SE + +++ RA + L+E E+ LR + L V LL+L+ E
Sbjct: 305 ELLPLSEGEMDQLLAQARRFHEEEIVRAFRALTELEQNLRYASEPRFSLEVGLLRLAHLE 364
>gi|392391723|ref|YP_006428325.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390522801|gb|AFL98531.1| DNA polymerase III, subunit gamma/tau [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 556
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 182/350 (52%), Gaps = 3/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ V ++L++A+ + V YL GPRGTGKT+ +++ A ALNC
Sbjct: 5 ALYREWRPKNFKDMVGQEHVTKTLMNALVQSKVAHAYLLSGPRGTGKTTTAKVLAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C G + +V E+D+ D + L L S++K++I
Sbjct: 65 EHRDGVEPCNQCPSCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + VVF++ T E+ K+P + LSR Q++ F +I I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRISLEQIY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L ++C + D AL IA KS G +RDA +LDQ LL K+ + Y+++G+V
Sbjct: 185 KHLDKVCQTIGRDVDSEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVLGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDCS 592
++ L+D L+ D + T+ E + +DP Q+I +L + + L + + +
Sbjct: 245 EEFSAKLVDHLLARDYAKTLGFLGEGINQGMDPRQIIRELLDYLRQALLYTSTQAFPHIA 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
K ++ L + + IL + E QL+ + + + L+Q+
Sbjct: 305 PHLKEHLAFQCETIGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQV 354
>gi|411118937|ref|ZP_11391317.1| DNA polymerase III, subunit gamma/tau [Oscillatoriales
cyanobacterium JSC-12]
gi|410710800|gb|EKQ68307.1| DNA polymerase III, subunit gamma/tau [Oscillatoriales
cyanobacterium JSC-12]
Length = 653
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 192/366 (52%), Gaps = 20/366 (5%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F ELVGQ + +L +AI + + YLF G RGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPQTFAELVGQEAIAATLTNAIQQQRIAPAYLFTGARGTGKTSSARILAKSLNCL 65
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ + PCG+C C + G + DV E+D+ D + L++ A P R+K++
Sbjct: 66 KSKKPTETPCGVCEVCQAIARGSALDVIEIDAASNTGVDNIRELIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE + VVFV+ T + ++ + +SR Q++ + +I +
Sbjct: 126 IIDEVHMLSTAAFNALLKTLEEPPERVVFVLATTDPQRVLPTIISRCQRFDYRRIPLDAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
+ LR I +E I A+ +A + G +RDAE LLDQLSLL KI + ++L+G V
Sbjct: 186 VTHLRHIADQETIPITDGAITLVAQIAQGGLRDAESLLDQLSLLSGKIDIEHVWDLVGSV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+ +LL LL A++ DT T++ + R LM +P+ ++ LA+ D+L K +
Sbjct: 246 PERDLLGLLT-AIAQDTPETLLDSTRRLMDRGREPLIVLQNLASFYRDLLIAK-----TA 299
Query: 594 ARKNFFGKHTSEADMQ--KLSRALKI---------LSETEKQLRMSKHQTTWLTVALLQL 642
+N TS Q L++ L + L E QL+ + WL V L+ L
Sbjct: 300 PTRNDLVALTSPTWQQLCDLAQTLDLSVILAGQQHLRAAEVQLKHTTQPQLWLEVTLMGL 359
Query: 643 SSSESS 648
S S
Sbjct: 360 LPSAIS 365
>gi|392399356|ref|YP_006435957.1| DNA polymerase III subunits gamma and tau [Flexibacter litoralis
DSM 6794]
gi|390530434|gb|AFM06164.1| DNA polymerase III, subunit gamma/tau [Flexibacter litoralis DSM
6794]
Length = 380
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 192/362 (53%), Gaps = 8/362 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ FD +VGQ+ + +L +AI G + +LF GPRG GKT+ SRI A +NCL+
Sbjct: 8 ARKYRPDTFDAVVGQSHITDTLKNAIRSGQLAQAFLFCGPRGVGKTTCSRILAKTINCLN 67
Query: 358 LE-DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + +PC C C F++G S ++ E+D+ N + + +L++ PP + + K++II
Sbjct: 68 ITPETEPCDECSSCKSFNAGNSLNISELDAASNNSVEDIRNLIEQVRYPPQAGKKKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + + L +LE + +F++ T E K+ + LSR Q + F +I+ D+A
Sbjct: 128 DEVHMLSNQAFNAFLKTLEEPPSYAIFILATTEKHKIIPTILSRCQIFDFNRIQPNDVAR 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG--KKITLSLAYELIGIV 534
L +I +E + ++ AL I K++G++RDA + D L +K+T + + + ++
Sbjct: 188 HLEKIATKENVEVEEEALQLIGRKADGALRDALSIFDMLVTFSPDRKLTYTGTIDNLHVL 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLE 589
D L D LS + + ++ E+++ D I L + D+L K L
Sbjct: 248 DYDYYFKLTDAFLSRNHTEALLIFDEILKKGFDGHNFIVGLCEHLRDLLVSKDAATVSLL 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ SE K + +++ L AL + S E + SK+Q + + LL+LS ++L
Sbjct: 308 ELSETIKEKYKLQAAQSSFSFLMSALNLASACELSYKNSKNQRLHVEMTLLKLSHVMAAL 367
Query: 650 DL 651
+
Sbjct: 368 SI 369
>gi|366163519|ref|ZP_09463274.1| DNA polymerase III subunits gamma and tau [Acetivibrio
cellulolyticus CD2]
Length = 555
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 193/368 (52%), Gaps = 9/368 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++V Q VV++L ++IS G + YLF G RGTGKT+ ++IF+ A+NC
Sbjct: 5 ALYRKWRPMVFEDVVEQEHVVKTLKNSISVGRIAHAYLFCGTRGTGKTTMAKIFSRAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + PC C C +G DV E+D+ N D V + P +R+K++I
Sbjct: 65 ENSTNGDPCNECEICKGILNGSLLDVIEIDAASNNSVDNVREIRDEVVYAPSKARYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E KLP + LSR Q++ F +I I
Sbjct: 125 IDEVHMLSSGAFNALLKTLEEPPGHVVFILATTEPHKLPATILSRCQRFDFRRIPVESIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I ++ + L IA S+G++RDA +LDQ +SL K +T ++GIV
Sbjct: 185 KRIEHIAKSSEVSIENEGLKLIARMSDGALRDAISILDQCISLGNKHLTYDDVLSVVGIV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDC 591
++ + D++D S + + L+ + Q +S L ++L + E+
Sbjct: 245 NNTFIADMVDAINSKEVEKVLYLINVLVMDGKNITQFVSDLVLYYRNLLICSTSRNPEEI 304
Query: 592 SEARKNFFGKHTSEADMQ---KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
EA K + +++ +++ A+K LS E ++ S H L VAL++L E+S
Sbjct: 305 IEASKEMIQRMKAQSQGLSNIEITSAIKELSTLEATMKWSTHARVLLEVALIKL--CENS 362
Query: 649 LDLNDSKL 656
++ D+ +
Sbjct: 363 VNSGDASM 370
>gi|125717830|ref|YP_001034963.1| DNA polymerase III subunits gamma and tau [Streptococcus sanguinis
SK36]
gi|422846493|ref|ZP_16893176.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK72]
gi|125497747|gb|ABN44413.1| DNA-directed DNA polymerase III chain, putative [Streptococcus
sanguinis SK36]
gi|325687936|gb|EGD29956.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK72]
Length = 556
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVTA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|306833147|ref|ZP_07466277.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis
ATCC 700338]
gi|304424721|gb|EFM27857.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus bovis
ATCC 700338]
Length = 559
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 192/352 (54%), Gaps = 3/352 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ V+ +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVISSTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
L I +E I++++ AL IA + G +RDA +LDQ LSL ++L++A E+ G
Sbjct: 184 EHLANILDKEEISYEEDALTLIAHCAEGGMRDALSILDQALSLTPDNHVSLAIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S L D + L++ TS + + S + + L N + D+L + + +
Sbjct: 244 ISMIALDDFVANVLANQTSQALTNLETIFDSGKSMSRFATDLLNYLRDLLVVQTGGENTH 303
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ F ++ + A+ ++ + ++++ +++ + + +QLS +
Sbjct: 304 TSQT-FQENLATAEQNRIFTMIDLVTKALPEIKNGVQPKIYAEMLTIQLSEA 354
>gi|253580411|ref|ZP_04857676.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848141|gb|EES76106.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 539
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 135/503 (26%), Positives = 239/503 (47%), Gaps = 22/503 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ F ++ GQ+ +V +L + I + YLF G RGTGKT+ ++I A A+NC
Sbjct: 5 ALYRKFRPDNFADVKGQDHIVTTLTNQIKHNRIGHAYLFCGTRGTGKTTVAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PC C C +G + +V E+D+ N D + + + P ++K++I
Sbjct: 65 EHPVNGSPCNECAMCKAIQAGTAMNVIEIDAASNNGVDNIREIREEVSYRPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVMFILATTEAHKIPITILSRCQRYDFHRITIDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGI 533
+RL + E + ++ A+ ++A +GS+RDA LLDQ LG+++T E++G
Sbjct: 185 ARLDELLKVEGVEAEEKAVRYVAKAGDGSMRDALSLLDQCIAFYLGQELTYDKVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
V + LL + D + ++ EL+ + Q + + ++L K E+ E
Sbjct: 245 VDTEVFSKLLRKVIRGDVTGSIHILEELIVGGRELSQFVGDFTWYMRNLLLVKTSENPEE 304
Query: 594 A------RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSS 645
A + ++ D++ L R ++I S+ Q+R + + + +AL++L +
Sbjct: 305 AIDVSSDNMKLLKEESTMLDVETLMRYIRIFSDLSNQIRYATQKRVLVEIALIKLCRPAM 364
Query: 646 ESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCV----GDKANKLGALEDYK 701
E++LD +L + + I + S K V G+KA A ED +
Sbjct: 365 ETNLDSVLDRLRVLEQRMDERPVQQVIVQQGSGKMPAETGAVQEPAGNKAPAKAAPEDLQ 424
Query: 702 GTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHH---RDYVSRAEKS 758
+ W+ T + K L+K + + G V +EF + YV E +
Sbjct: 425 KIVAG-WRVITGQT-TGMFKQMLQK--SVPKYNSETGEPVLYVEFQDFLGQSYVDNPE-A 479
Query: 759 WKLIASTLQSVLGCNVEIRLLCA 781
K + + + G VEI++L A
Sbjct: 480 KKELQDIITAQTGKTVEIQMLVA 502
>gi|150019759|ref|YP_001312013.1| DNA polymerase III subunits gamma and tau [Clostridium beijerinckii
NCIMB 8052]
gi|149906224|gb|ABR37057.1| DNA polymerase III, subunits gamma and tau [Clostridium
beijerinckii NCIMB 8052]
Length = 548
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 198/359 (55%), Gaps = 9/359 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I + YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPKNFEDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L L++ +PC C C + G + DV E+D+ N D++ ++ PP +R+KI+I
Sbjct: 65 LDLQNGEPCNECEMCRKINEGLAIDVTELDAASNNGIDKIRDIIDDTKYPPQEARYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L L +LE + V+F++ T + KLP + LSR Q++ F +I +I+
Sbjct: 125 MDEVHMLSVGAVNAFLKTLEEPPKRVIFILATTDPQKLPITILSRCQRFDFKRISQKEIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
SRL++I + I ++Q +LD I+ +G++RDA +LDQ +G+ KI ++G+V
Sbjct: 185 SRLKKITDSQGITYEQKSLDLISRVCDGAMRDALSILDQAIAMGEDKINYEDLVSILGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ-----LISQLANLIMDILAGKCLE 589
+++ L D+ + ++I +L+ S D MQ LI+ NL+M + E
Sbjct: 245 TNEYLFDITYAIIDRSIEKSMIIIDKLVYSGKD-MQLFIKDLIAHFRNLLMVKVTNNPEE 303
Query: 590 --DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + + ++++ RA++IL ++E + SK +L +A++++ E
Sbjct: 304 VLDMSLENIHLIKEQGRKIRVEEIMRAIRILQDSETNSKASKQSRLYLELAIIKMCKIE 362
>gi|15606894|ref|NP_214275.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5]
gi|2984127|gb|AAC07663.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5]
Length = 473
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 148/266 (55%), Gaps = 1/266 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
++K+RP FF E++GQ VR L +AI V YLF GPRG GKT+ +RI A ALNC
Sbjct: 6 FARKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAKALNCK 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ +PCG C C G D+ E+D+ D V +L ++ P ++K++II
Sbjct: 66 NPSKGEPCGECENCREIDRGVFPDLIEMDAASNRGIDDVRALKEAVNYKPIKGKYKVYII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + +L +LE VFV+ T E DK+ + LSR Q+ F K++ +
Sbjct: 126 DEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRCQRIIFSKVRKEKVIE 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L++IC +E I ++ AL+ +A S G +RDA LLDQ S+ G+ ++T + +GI+S
Sbjct: 186 YLKKICEKEGIECEEGALEVLAHASEGCMRDAASLLDQASVYGEGRVTKEVVENFLGILS 245
Query: 536 DDELLDLLDLALSSDTSNTVIRAREL 561
+ + L L L+S+ + REL
Sbjct: 246 QESVRSFLKLLLNSEVDEAIKFLREL 271
>gi|422884345|ref|ZP_16930794.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK49]
gi|332360360|gb|EGJ38172.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK49]
Length = 556
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICKAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILDQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|580855|emb|CAA29958.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
168]
Length = 422
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 197/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +L+ IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + + Q L + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ DL + + ++
Sbjct: 365 AADLPEVDMLMK 376
>gi|326790139|ref|YP_004307960.1| DNA polymerase III subunits gamma and tau [Clostridium lentocellum
DSM 5427]
gi|326540903|gb|ADZ82762.1| DNA polymerase III, subunits gamma and tau [Clostridium lentocellum
DSM 5427]
Length = 537
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 181/357 (50%), Gaps = 8/357 (2%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +K+RP FD++VGQ +VR+L + I+ V YLF G RGTGKTS ++IFA A+N
Sbjct: 4 LALYRKYRPYIFDDVVGQGHIVRTLKNQINSHRVAHAYLFSGSRGTGKTSIAKIFARAVN 63
Query: 355 CLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
C + CG C C S G ++ E+D+ N D + + + P ++K++
Sbjct: 64 CEEPVNGSACGKCETCKRISDGAGINIIEIDAASHNGVDNIREINEEVKYTPAVGKYKVY 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE HV+F++ T + K+P + LSR Q++ F +I +I
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTDPQKIPVTILSRCQRFDFKRISAKEI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSL-LGKKITLSLAYELIG 532
L E I+ ++ AL +IA ++G +RDA +L+Q +S G+ ITL L+G
Sbjct: 184 EETLISYMQTEKIDIEEKALAYIARLADGGMRDALSILEQSISFYFGETITLDKVLYLVG 243
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE--- 589
V + L +++D D + + E+ R Q +S L ++L K +
Sbjct: 244 AVDSNILFEMIDAIAGKDATKVLELCEEVNRQGRSMRQFVSDLLEHSRNLLVAKTTKGGV 303
Query: 590 ---DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
D S K S+ +L R +K LS E ++R S L VALL+LS
Sbjct: 304 EVLDYSLEYIEALKKQASDISTNELMRYMKHLSGLEYEMRTSVSPRILLEVALLKLS 360
>gi|108761627|ref|YP_630176.1| DNA polymerase III subunits gamma and tau, truncated, partial
[Myxococcus xanthus DK 1622]
gi|108465507|gb|ABF90692.1| DNA polymerase III, gamma and tau subunits, truncated [Myxococcus
xanthus DK 1622]
Length = 402
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 168/327 (51%), Gaps = 5/327 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP FD++ GQ VVR++ +AI V YLF GPRG GKT+A+R+ A ALNC
Sbjct: 6 LARKWRPQKFDDMTGQEHVVRTVANAIKIDRVAHAYLFCGPRGVGKTTAARLLAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+PCG CR C ++G S DV E+D N + V + ++A P R KI+II
Sbjct: 66 KGPTAQPCGECRACTEIAAGTSVDVAEIDGASNNGVENVREIRENAKYLPQRDRHKIYII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L G + +L +LE HV F+ T E KLP + LSR Q+++F +I +
Sbjct: 126 DEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQRHNFRRIPAARMLQ 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RL+ IC E +L + +S G +RDA LLDQ L+ G + + +G +
Sbjct: 186 RLQEICKAEGAGISDRSLSLVVRQSEGGMRDALSLLDQVLASCGATPSDEEVADALGAID 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLEDC 591
+ D D + D + R E+ +D +L +LA +L + GK ++
Sbjct: 246 RTLVQDFADALVHKDAKRVLERVEEVFNRGLDLKRLAEELAFQLRHLFVTKTLGKAPDEL 305
Query: 592 SEARKNFFGKHTSEADMQKLSRALKIL 618
+E+ + +A+ +L+R ++
Sbjct: 306 AESEQKALMALAQDAEAAQLTRLFDVV 332
>gi|302190914|ref|ZP_07267168.1| DNA polymerase III, gamma/tau subunit [Lactobacillus iners AB-1]
Length = 583
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 65 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 185 ARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGYA 244
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 245 DQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 303
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ +E LR + Q L V ++++S+ +
Sbjct: 304 FLSANYL-EQLRLISTQVLSQTLQLANEALNSLRYTNQQQIPLKVFVVRISTQD 356
>gi|238922752|ref|YP_002936265.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale
ATCC 33656]
gi|238874424|gb|ACR74131.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale
ATCC 33656]
Length = 523
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 185/355 (52%), Gaps = 8/355 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP F+++ GQ +V +L + I + YLF G RGTGKT+ ++IFA A+NC
Sbjct: 5 ALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C + G S +V E+D+ N D + + + P R+K++I
Sbjct: 65 EHPVDGSPCGECPSCRAITEGSSMNVIEIDAASNNGVDNIRQIREEVTYRPTEGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFHRISIDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
SRL + +E + ++ A+ ++A +GS+RDA LLDQ LG+K+T E++G
Sbjct: 185 SRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLLDQCIAFHLGEKLTYENVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
V + LL L D + + EL+ + QL++ + ++L + +D E
Sbjct: 245 VDTEVFSRLLRRILDEDVTGAIRILGELIDEGRELSQLVNDFTWYMRNLLLLQSSDDMEE 304
Query: 594 A---RKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
K+ EA + K L R +++ SE Q++ + + + +A+++L
Sbjct: 305 VLDISKDNLEALKEEAALVKPETLIRYIRVFSELSSQVKFASQKRIMVEIAIIKL 359
>gi|374710504|ref|ZP_09714938.1| DNA polymerase III subunits gamma and tau [Sporolactobacillus
inulinus CASD]
Length = 569
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 161/289 (55%), Gaps = 1/289 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +L GQ + ++L +A+++ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVYRPQTFHDLAGQQHIAQTLQNALTKQQFSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P R+K++I
Sbjct: 65 EQAPTSEPCNECAACRGITAGSIADVIEIDAASNNGVDEIRDIRDKVKYAPSEVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H VF++ T E K+P + +SR Q++ F +I +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPEHAVFILATTEPQKIPLTIISRCQQFDFRRIPSSEIF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR + ++ + + AL IA S G +RDA +LDQ + + IT+ ++ G+V
Sbjct: 185 QRLRFVVQDQHLEAEDEALQLIAKASEGGMRDALSVLDQTAAYSEAAITVQDVLDVTGMV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+D + +L++L + ++ + V + L+ DP++L+ Q+ D+L
Sbjct: 245 ADQMIRELIELLMENNAAAAVGKIGALLDQGKDPLRLMEQMIYYYRDLL 293
>gi|325977937|ref|YP_004287653.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|325177865|emb|CBZ47909.1| DNA polymerase III subunit gamma/tau [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 559
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 165/290 (56%), Gaps = 2/290 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVVSTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++V+F++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVIFILATTELHKIPTTILSRVQRFEFKAIKLAAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
L I +E I++++ AL IA + G +RDA +LDQ LSL ++L++A E+ G
Sbjct: 184 EHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNHVSLAIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+S L D + L++ TS + + S + + L N + D+L
Sbjct: 244 ISMTALDDFVANVLANQTSQALANLETIFDSGKSMNRFATDLLNYLRDLL 293
>gi|306831039|ref|ZP_07464201.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|304427062|gb|EFM30172.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 559
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 192/352 (54%), Gaps = 3/352 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ V+ +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLAAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
L I +E I++++ AL IA + G +RDA +LDQ LSL ++L++A E+ G
Sbjct: 184 EHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNYVSLAIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S L D + L++ TS + + S + + L N + D+L + + +
Sbjct: 244 ISMTALDDFVANVLANQTSQALANLETIFDSGKSMSRFATDLLNYLRDLLVVQTGGENTH 303
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ F ++ + A+ ++ + ++++ +++ + + +QLS +
Sbjct: 304 TSQT-FQENLATAEQNRIFTMIDLVTKALPEIKNGVQPKIYAEMLTIQLSEA 354
>gi|410594385|ref|YP_006951112.1| DNA polymerase III subunit gamma/tau [Streptococcus agalactiae
SA20-06]
gi|421532006|ref|ZP_15978379.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
STIR-CD-17]
gi|403642729|gb|EJZ03546.1| DNA polymerase III subunits gamma and tau [Streptococcus agalactiae
STIR-CD-17]
gi|410518024|gb|AFV72168.1| DNA polymerase III subunit gamma/tau [Streptococcus agalactiae
SA20-06]
Length = 554
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 188/352 (53%), Gaps = 8/352 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ+VV +L A+S ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQSVVSTTLKQAVSSKKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLLAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK--ITLSLAYELIGI 533
L +I +EAI++D AL +A ++ G +RDA +LDQ L K I+L +A E+ G
Sbjct: 184 DHLAQILDKEAISYDLDALTLVARRAEGGMRDALSILDQALSLAKDNHISLDVAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S + D + L+ DT+ + + + S + + L + D+L + + S
Sbjct: 244 ISLSAIDDYVSNILAHDTTEALAKLEIIFDSGKSMSRFSTDLLMYLRDLLVVQAGGENSH 303
Query: 594 ARKNFFGKHTSEADM--QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F + D+ + + + +L E ++ H + + +QLS
Sbjct: 304 SSDTFMANLDVKQDILFEMIDKVTSVLPE----IKNGSHPKVYAEMMTIQLS 351
>gi|404485202|ref|ZP_11020400.1| DNA polymerase III, subunit gamma and tau [Barnesiella
intestinihominis YIT 11860]
gi|404338637|gb|EJZ65082.1| DNA polymerase III, subunit gamma and tau [Barnesiella
intestinihominis YIT 11860]
Length = 592
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 182/352 (51%), Gaps = 7/352 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL- 356
++K+RP+ F +VGQ + ++L +AI + YLF GPRG GKTS +RIFA +NC
Sbjct: 8 ARKYRPSTFRSVVGQKALTQTLKNAIDSNKLAHAYLFCGPRGVGKTSCARIFAKTINCFH 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
E + C C C F+ RS ++ E+D+ N D + +L+ +PP ++K+FII
Sbjct: 68 PTESGEACNECESCRAFNEQRSYNIIELDAASNNSVDDIRTLIDQVRIPPQIGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE H +F++ T E K+ + LSR Q Y F +I DIA
Sbjct: 128 DEVHMLSAAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQVYDFQRITTTDIAE 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLQYVASQEGITAEPEALNIIAQKADGGMRDALSVFDQVVSFSGGHITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L+D L ++ ++ +E+ + + I L+ D+L K L +
Sbjct: 248 YEYYFRLVDAFLQNNVPQALMIFKEIRDNGFEAQFFIGGLSRHFRDLLVSKDPVTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
SE+ +G+ + + L RA+++ + + R+S ++ + + L+Q+
Sbjct: 308 VSESVAKRYGEQAEKCTLPFLYRAMELSNRCDLDYRISNNKQFLVELTLIQI 359
>gi|398306489|ref|ZP_10510075.1| DNA polymerase III subunits gamma and tau [Bacillus vallismortis
DV1-F-3]
Length = 563
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 197/371 (53%), Gaps = 8/371 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +LD IA+ ++G +RDA LLDQ +S G+++ + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLLDQAVSFSGEELKVDDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQFYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + Q + + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRGLSEQIPTQAIYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCL 658
+ +L + + +
Sbjct: 365 AAELPEVDMLM 375
>gi|325844366|ref|ZP_08168121.1| DNA polymerase III, subunit gamma and tau [Turicibacter sp. HGF1]
gi|325489171|gb|EGC91554.1| DNA polymerase III, subunit gamma and tau [Turicibacter sp. HGF1]
Length = 605
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 189/360 (52%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + RP F ++VGQ +VR++ +A+ ++ YLF GPRGTGKTS ++I A A+NC
Sbjct: 5 ALYRAHRPQKFSDVVGQVHIVRTIQNALKHERLSHAYLFCGPRGTGKTSIAKIIAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++ +PC C C ++G + DV E+D+ N D + + P R+K++I
Sbjct: 65 VNYPTDEPCNECVNCTTITNGSNSDVFEIDAASNNGVDEIREIRDKVKYAPTMGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I +I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPPTIISRCQRFDFKQISTKEIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I + I F++ A+ +A + G +RDA LLDQ +S KI + + L G +
Sbjct: 185 QHLSEILTSQNIEFEEDAVQLVAELAEGGMRDALSLLDQVISYSYDKILIDDVHALSGTI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++ +LL ++ D S + ++++ + +++I L N+ D+L + + + S
Sbjct: 245 ANHQLLQIIRGIKDLDFSTIIDLIQDMIDQGKEAIRIIDGLINVYRDLLMYQKIGNSSNI 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
F T E ++ + L L++ + ++R + H L V LL L+ ++S +
Sbjct: 305 SNLLISDELFIPLTEELRSAQIVQYLFKLNKLQNEMRFANHPELMLEVGLLSLTETDSEM 364
>gi|160887744|ref|ZP_02068747.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492]
gi|270295690|ref|ZP_06201891.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|423305050|ref|ZP_17283049.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
CL03T00C23]
gi|423309835|ref|ZP_17287819.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
CL03T12C37]
gi|156862775|gb|EDO56206.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
ATCC 8492]
gi|270274937|gb|EFA20798.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|392682549|gb|EIY75893.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
CL03T00C23]
gi|392683320|gb|EIY76656.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
CL03T12C37]
Length = 604
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 187/354 (52%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC+S
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCMS 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFSRIGVEDTVA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L L + S+ ++ +++ D I+ L++ + D+L K LE
Sbjct: 248 YEYYFKLTGFFLENKISDALLLLNDVLNKGFDGSHFITGLSSHLRDLLVSKDPATLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRERYQAQ-AQQCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQVA 360
>gi|422862770|ref|ZP_16909402.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK408]
gi|327473978|gb|EGF19391.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK408]
Length = 556
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 175/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKK-ITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + +T +A E+ G
Sbjct: 184 GHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENLLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVTA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|78043423|ref|YP_361464.1| DNA polymerase III subunit gamma and tau [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995538|gb|ABB14437.1| putative DNA polymerase III, gamma/tau subunits [Carboxydothermus
hydrogenoformans Z-2901]
Length = 511
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 184/351 (52%), Gaps = 3/351 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F E+VGQ +V+ L +A++ V YLF GPRGTGKT+ +++ A A+NC
Sbjct: 4 ALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C ++ +V E+D+ D + L +S L P ++K++I
Sbjct: 64 EHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +HV+F++ T E +K+P + +SR Q++ F +I I
Sbjct: 124 IDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKTIW 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
L+ I +E + ++ AL IA S G +RDA L+DQ+ + KIT+ +++G VS
Sbjct: 184 EHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVEDTLKVLGFVS 243
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
++L+L+ ++ + E++ +D + Q+ + + K + E
Sbjct: 244 WRKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYVRYLNLIKNGIEVEELM 303
Query: 596 KNFFGKHTSEADMQKLSRALKI---LSETEKQLRMSKHQTTWLTVALLQLS 643
K SEA + + + + ++ E+++R + W V LL+++
Sbjct: 304 PEVLEKLRSEAALWEEDKLFLLWDDIARLEREVRYASFPRIWAEVGLLKVA 354
>gi|393784549|ref|ZP_10372712.1| DNA polymerase III, subunit gamma and tau [Bacteroides salyersiae
CL02T12C01]
gi|392665530|gb|EIY59054.1| DNA polymerase III, subunit gamma and tau [Bacteroides salyersiae
CL02T12C01]
Length = 618
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 186/353 (52%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
ED + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTEDGEACNACESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVQ 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLAYVASKENITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L D L + S+ ++ +++ D I+ L++ D+L K L +
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLALLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + + + + + L RA+K+ ++ + R SK++ + +AL+Q++
Sbjct: 308 VGASIRQRYQEQAQKCPLPFLYRAMKLCNDCDMNYRASKNKRLLVELALIQVA 360
>gi|398309180|ref|ZP_10512654.1| DNA polymerase III subunits gamma and tau [Bacillus mojavensis
RO-H-1]
Length = 564
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 193/373 (51%), Gaps = 9/373 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ ALD IA+ ++G +RDA LLDQ +S G ++ + A + G V
Sbjct: 185 GRMNKIVDAEELQVEEGALDIIASAADGGMRDALSLLDQAVSFSGDELKVDDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L S + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAQSLHEKHVSEALETLNELLQQGKDPAKLIEDMIFYFRDMLLFKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALL---QLSSSE 646
E K F + + + Q + + IL+++ ++++ + H + VA++ Q S
Sbjct: 305 LEKVKVDETFRELSEQIPTQAIYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQP 364
Query: 647 SSLDLNDSKLCLR 659
++ DL + + ++
Sbjct: 365 AAADLPEVDMLMK 377
>gi|422854097|ref|ZP_16900761.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK160]
gi|422879031|ref|ZP_16925497.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1059]
gi|422928876|ref|ZP_16961818.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
ATCC 29667]
gi|422931849|ref|ZP_16964780.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK340]
gi|325696611|gb|EGD38500.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK160]
gi|332366531|gb|EGJ44277.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1059]
gi|339615880|gb|EGQ20545.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
ATCC 29667]
gi|339619282|gb|EGQ23863.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK340]
Length = 556
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 175/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKK-ITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + +T +A E+ G
Sbjct: 184 GHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENLLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVTA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|333977531|ref|YP_004515476.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333821012|gb|AEG13675.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 583
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 187/362 (51%), Gaps = 13/362 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP+ F E+VGQ V +L +A+ G V YLF GPRGTGKT+ +++ A ALNC
Sbjct: 5 ALYRKWRPSRFKEIVGQEHVTLTLQNALLAGRVAHAYLFCGPRGTGKTTTAKVLAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ + +PC C C ++G S DV E+D+ D + L + P + ++++I
Sbjct: 65 LARQGSEPCNECAVCREINAGTSMDVVEIDAASHRGIDEIRELREKVRFSPALAGYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HVVFV+ T E K+P + LSR Q++ F I GD+
Sbjct: 125 IDEVHMLTSEAFNALLKTLEEPPAHVVFVLATTEPHKVPLTILSRCQRFDFHPIGLGDML 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIV 534
+RLR + ++ AL IA ++G +RDA +LDQ + G +T+ + ++G V
Sbjct: 185 ARLREVATGSGFQVEEEALYLIARAADGGLRDALGILDQAAAYGNMVVTVDHVHRIMGTV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ--------LISQLANLIMDILAGK 586
D DLLD A + V R L+ + + + L + L NL++ ++ +
Sbjct: 245 RD----DLLDGAARDLAAGRVDRLLHLVAALVAEGKDLRLFVQGLAAYLRNLMLVRVSHQ 300
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ + + E ++L L++L+ E+ ++ + L VAL++ + E
Sbjct: 301 EELVLAPGERERLLERAGEFTREQLLYILQVLTRVEQDMKWASQPRILLEVALVEATRPE 360
Query: 647 SS 648
Sbjct: 361 GG 362
>gi|149179572|ref|ZP_01858104.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
8797]
gi|148841589|gb|EDL56020.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
8797]
Length = 484
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 181/353 (51%), Gaps = 7/353 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L+++FRP F E+VGQ +V ++L +AI V YLF G RG GKTS +RI A ALNC
Sbjct: 11 LARRFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMARILAKALNCP 70
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+D PCG C C + G DV E+D D + SL + + S++KI+II
Sbjct: 71 HTQDGIPCGECEVCQNIAVGSDVDVLEIDGASNRGIDDIRSLRANVNVRSMRSKYKIYII 130
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + +L +LE +V F+ T E +KLP + LSR Q++ F I++ I
Sbjct: 131 DEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRCQRFDFGYIEENSICD 190
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK-ITLSLAYELIGIVS 535
RL++I E ++ A+ +A ++ GS+RD++ + DQL G+ +T + ++G S
Sbjct: 191 RLKQIAEAEQVSVADDAIQLVARRAGGSMRDSQSIFDQLLSFGESHLTAESVHRILGTAS 250
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI------LAGKCLE 589
D+ L++L+D + + + + + + + QL N + D+ + L
Sbjct: 251 DERLIELIDALIEQKRDVALTHFDAALNAGVQLNEFVDQLLNYLRDLSVVATGASQVTLL 310
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
SE + + +Q A +IL+E ++ + H + +AL+++
Sbjct: 311 SISEMNRASLQRQAEAWGIQTCLAAFQILNEARNRMFRASHGRALVELALIRM 363
>gi|295094180|emb|CBK83271.1| DNA polymerase III, subunits gamma and tau [Coprococcus sp.
ART55/1]
Length = 548
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/529 (26%), Positives = 239/529 (45%), Gaps = 42/529 (7%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP+ FDE+ GQ+ +V +L + I + +LF G RGTGKTS ++IFA A NC
Sbjct: 5 ALYRKWRPDTFDEVKGQDHIVTTLRNQIKNDRLGHAFLFCGTRGTGKTSIAKIFAKACNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C S G S +V E+D+ N D + + + PP ++K++I
Sbjct: 65 EHPVDGSPCNECASCRAISDGSSLNVIEIDAASNNGVDNIRQIREEVAYPPTEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + SR QKY F +I I+
Sbjct: 125 IDEVHMLSPGAFNALLKTLEEPPSYVIFILATTESHKIPITISSRCQKYDFRRIPVDVIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
RL + E ++ D+ A+D+IA +GS+RDA +LDQ LG+K+T E IG
Sbjct: 185 DRLEELMNREGLDADKKAIDYIAKSGDGSMRDALSILDQCVAFNLGQKLTYDNVLETIGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-------GK 586
V D LL+ L SD + + E++ + + +++ + +IL G
Sbjct: 245 VDIDTFARLLECVLESDVEHAIDVVDEVVWQGRELGRFVNEFTWFLRNILVVKLSSAEGD 304
Query: 587 CLEDCSE--ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
L+ E R H E+ + R + + S+T ++ S + L +A+++L
Sbjct: 305 RLDMTKENLERIREISGHMEES---TIVRYINVFSDTAASIKYSSQKRIVLEMAVIKLCR 361
Query: 645 SESSLDLNDSKLCLRYAHDKDGD------------SHCTISPRDSFKHLVRGSCVGDKAN 692
+ +D +R K D S ++SP D ++ + + +
Sbjct: 362 PQMEVDTTSLIERVRMLEKKLDDLEANGIQAAPVQSAASVSPADD---VIDQKGMKEYQD 418
Query: 693 KLG-------------ALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGL 739
KL A E++ LE + A + N +R + LS H L
Sbjct: 419 KLAMELPKAEFEDLQRAAENWNDILEKLSVPARRYLKRNDADPAIRTKLILSDDHRRLLL 478
Query: 740 AVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKEN 788
+ + ++ + + S ++ LG +E +LC S +N
Sbjct: 479 MIPLTDDDMPKLYFDKPENVEHVKSVIEEYLGREIEFEILCTRNSHSDN 527
>gi|417914929|ref|ZP_12558560.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis bv.
2 str. SK95]
gi|342835680|gb|EGU69914.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis bv.
2 str. SK95]
Length = 552
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 148/242 (61%), Gaps = 2/242 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV ++L A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + G DV E+D+ N D + + + P +R+K++I
Sbjct: 64 LNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +Q+VVF++ T EL K+P + LSR Q++ F I+ DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQDIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
+ ++ I +E I+ + A++ IA ++ G +RDA +LDQ LSL G +T +++ E+ G
Sbjct: 184 NHIQTILSKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEITGT 243
Query: 534 VS 535
+S
Sbjct: 244 IS 245
>gi|89892857|ref|YP_516344.1| hypothetical protein DSY0111 [Desulfitobacterium hafniense Y51]
gi|89332305|dbj|BAE81900.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 557
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 183/350 (52%), Gaps = 3/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ+ V ++L +A+ + V YLF GPRGTGKT+ +++ A ALNC
Sbjct: 5 ALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
E +PC C C G + +V E+D+ D + L L S++K++I
Sbjct: 65 EHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAGESKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + VVF++ T E+ K+P + LSR Q++ F +I I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIH 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
S L ++C + + AL IA KS G +RDA +LDQ LL K+ + Y+++G+V
Sbjct: 185 SHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVLGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDCS 592
++ L+D L+ D + + E + +DP Q+I +L + + L + + +
Sbjct: 245 EEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIRELLDYMRQALLYASTQAFPQVA 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ ++ L + + IL + E QL+ + + + L+Q+
Sbjct: 305 PHLREHLAYQCQMLGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQV 354
>gi|421894096|ref|ZP_16324587.1| DNA polymerase III, subunits gamma and Tau [Pediococcus pentosaceus
IE-3]
gi|385272924|emb|CCG89959.1| DNA polymerase III, subunits gamma and Tau [Pediococcus pentosaceus
IE-3]
Length = 581
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 193/363 (53%), Gaps = 14/363 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ+VV R+L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQKFDDMVGQDVVTRTLKNALITEQTSHAYLFTGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 HYLKDGEPCNECVTCKAITEGTLNDVIEIDAASNNGVEEIRDIRDKAKYAPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 125 VDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPLTIISRTQRFDFKRITPAQSY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I ++ I +DQ AL IA + G +RDA +LDQ+ G +++TL A + G V
Sbjct: 185 DRMVYILDQKGIQYDQKALAIIAKAAEGGMRDALSILDQVISFGNEEVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIM-----DILAG 585
+ L L +TS + +++ D +LI L NL++ ++
Sbjct: 245 NQTLLDQYLTQIFKQETSAALETLHQILDEGKDGQRLIEDLITVQRNLLLYQEDPQLVQE 304
Query: 586 KCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ L D SEA F + + +L + + L+ ++Q+R + H +L V ++LS
Sbjct: 305 QSLNDLSEA----FTEEAAMVTGVELYQMIDTLNSIQQQMRFTTHPDVYLEVLTIKLSQR 360
Query: 646 ESS 648
+++
Sbjct: 361 KTA 363
>gi|335427716|ref|ZP_08554638.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
gi|335429156|ref|ZP_08556058.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
gi|334890236|gb|EGM28508.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
gi|334894186|gb|EGM32390.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
Length = 666
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 181/353 (51%), Gaps = 5/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ + R+ +A+ + + YLF GPRGTGKT+ ++I A A+NC
Sbjct: 5 ALYRVYRPQTFKDVVGQAHITRTFKNALEKNKIAHAYLFTGPRGTGKTTVAKIIAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C +SG DV E+D+ N D + + P RFK++I
Sbjct: 65 EQSPISEPCNNCENCKSINSGFDSDVFEIDAASNNGVDEIREIRDKVKYSPTHGRFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQRFDFRSISIQHIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SRLR + +E I D+ A+ IA + G +RDA LLDQ +S + ++ +E+ G V
Sbjct: 185 SRLREVVAKEDIRVDEQAIITIAKNAKGGMRDALSLLDQAISFSDEYVSEENVHEITGTV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-E 593
S+++L L S T+ ++ EL+ + +LI L D+L + L+ E
Sbjct: 245 SEEKLYQLASAMTDSKTAESIEIVDELLSLGKEVTRLIEDLIYYYRDLLLIQKLDQIDHE 304
Query: 594 ARKNFFGKHTSEADMQKLS---RALKILSETEKQLRMSKHQTTWLTVALLQLS 643
N + A + K S + IL+ + +++ + H ++ +AL +S
Sbjct: 305 LITNHSEQTLKLATICKTSDIFNIISILNNAQYEMKKTNHPRVFIELALFDIS 357
>gi|393788838|ref|ZP_10376964.1| DNA polymerase III, subunit gamma and tau [Bacteroides nordii
CL02T12C05]
gi|392653944|gb|EIY47594.1| DNA polymerase III, subunit gamma and tau [Bacteroides nordii
CL02T12C05]
Length = 608
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 185/353 (52%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC+S
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMS 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 LTADGEACNACESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVQ 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLTYVASKENITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L D L + S+ ++ +++ D I+ L++ D+L K L +
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDPATLALLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + + + + + L RA+K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRQRYQEQAQKCPLPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVA 360
>gi|347522488|ref|YP_004780059.1| DNA polymerase III subunit gamma/tau [Lactococcus garvieae ATCC
49156]
gi|385833872|ref|YP_005871647.1| DNA polymerase III gamma/tau subunits [Lactococcus garvieae Lg2]
gi|343181056|dbj|BAK59395.1| DNA polymerase III gamma/tau subunits [Lactococcus garvieae ATCC
49156]
gi|343183025|dbj|BAK61363.1| DNA polymerase III gamma/tau subunits [Lactococcus garvieae Lg2]
Length = 552
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 147/256 (57%), Gaps = 1/256 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L +AI G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRKYRSQRFDEMVGQEVVATTLKNAIVNGQISHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ ++ +PC C C + G DV E+D+ N D + + + + +K++I
Sbjct: 65 PNQKEGEPCNTCDICQAITQGSLEDVIELDAASNNGVDEIREIRDKSTYAASRANYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + +VVFV+ T EL K+P + +SR Q++ F I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPTDNVVFVLATTELQKIPATIISRVQRFAFKAITTRDIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L + +E I F+ AALD IA + G +RDA LLDQ LS K+ A + G +
Sbjct: 185 QHLAEVLADEKIEFEDAALDVIAKSAEGGMRDALSLLDQALSFSDGKLAEKDALLVTGSI 244
Query: 535 SDDELLDLLDLALSSD 550
+++ L+ + +SD
Sbjct: 245 ANEALVSYVAALAASD 260
>gi|304437633|ref|ZP_07397587.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369376|gb|EFM23047.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 613
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 189/370 (51%), Gaps = 16/370 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ + R+L A++ G ++ YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PCG+C C S G S DV E+D+ D + L +S P +KI+I
Sbjct: 65 AEGPTLTPCGICDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGHYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + V+F++ T E K+P + SR Q+Y F +I +I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITVTEIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL +C E I ++ AL IA +++G +RDA +LDQ ++L +T E +G+V
Sbjct: 185 DRLIYVCKESDIAAEEDALGIIAEQADGGMRDALSILDQCMALAEGTLTAERVQETLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----------A 584
+ + + D + + + EL++S + Q++++LA ++ A
Sbjct: 245 GRAWIRHMAGEIAARDAAALIAQLSELLQSGRELKQVLAELAQYFRRLMIAGVGGAVSAA 304
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
C D E R + + T E M L R L+ET ++LR S + L+ L
Sbjct: 305 ELCAGDAEELRMD-AAQFTQEEIMSILRR----LNETMQELRTSPQPRIAVETLLIGLCH 359
Query: 645 SESSLDLNDS 654
+E + +S
Sbjct: 360 TEGAAPSGES 369
>gi|291562955|emb|CBL41771.1| DNA polymerase III, subunits gamma and tau [butyrate-producing
bacterium SS3/4]
Length = 572
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 187/362 (51%), Gaps = 14/362 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++ GQ+ +V++L + I G + YLF G RGTGKT+ ++I A A+NC
Sbjct: 5 ALYRKWRPQVFADVKGQDHIVKTLQNQIGSGRIGHAYLFCGTRGTGKTTVAKILARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PCG C C +G S +V E+D+ N + + + + PP +++++I
Sbjct: 65 EHPVDGSPCGECPSCKQILAGTSLNVVEIDAASNNGVENIREIREQVQYPPTEGKYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPITVLSRCQRYDFRRITLDTIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
+RL+ + E + + AL ++A +GS+RDA LLDQ + G+ +T +++G
Sbjct: 185 ARLKELTEAENMPVEDKALRYVAKAGDGSMRDALSLLDQCAAFHFGETLTYEHVLDVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSN-------TVIRARELMRSKIDPMQLISQLANLIMDILA-- 584
V + DL + T + V++ REL + +D I L NL++ A
Sbjct: 245 VDNSVFRDLFHAIRENRTKDCILKLEEMVVQGRELSQFVVD---FIWFLRNLLLLRTADD 301
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ L D SE + + D L R +++ SE Q+R + + + +A ++L+
Sbjct: 302 AEDLLDMSEDNLTQLREDAALVDENTLMRYIRVFSELSNQIRFANQKRVLIELAFIKLTK 361
Query: 645 SE 646
E
Sbjct: 362 PE 363
>gi|350566424|ref|ZP_08935095.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus indolicus
ATCC 29427]
gi|348662773|gb|EGY79415.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus indolicus
ATCC 29427]
Length = 545
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 195/373 (52%), Gaps = 9/373 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F+E+VGQN V +L + I + YLF G RGTGKTS ++I + A+NC
Sbjct: 4 ALYRKYRSKTFEEIVGQNHVTTALKNQIINNEFSHAYLFSGTRGTGKTSCAKILSRAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C R DV E+D+ N D + L PP + ++K++I
Sbjct: 64 EHPVDGNPCNECESCRSILEDRVMDVVEMDAASNNGVDDIRELKDKVVYPPQNLKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L LE +H++F++ T E +K+P + LSR Q+Y+F +I + +I+
Sbjct: 124 IDEVHMLSKGAFNALLKILEEPPRHLIFILATTEPEKIPTTILSRLQRYNFKRISEDEIS 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIV 534
S L RI E + + IA S+G++RD+ LLDQL S +K+T A +++GIV
Sbjct: 184 SNLERISKIENREVEPEVFELIANSSDGAMRDSLSLLDQLFSFSDEKLTYERAIDILGIV 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S+ L +L D + + + ++ EL ++ D LIS L +++ +
Sbjct: 244 SNKFLFNLSDAIIERNLAQSLAEMDELYKAGKDITILISDLITHFRNVMVIGATNSETLV 303
Query: 595 RKNFFGKHTSEADMQKLSR---ALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDL 651
+ F ++ ++A+ SR +KIL+ T ++ S + + + L++L + +
Sbjct: 304 HTSQFEEYKNQAEKAGASRIIEIIKILNNTLSNIKYSMDKRVMIEMCLVELCTQ-----V 358
Query: 652 NDSKLCLRYAHDK 664
D +L L+ DK
Sbjct: 359 TDVELRLKELEDK 371
>gi|153808560|ref|ZP_01961228.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185]
gi|423219389|ref|ZP_17205885.1| DNA polymerase III, subunit gamma and tau [Bacteroides caccae
CL03T12C61]
gi|149128882|gb|EDM20099.1| DNA polymerase III, subunit gamma and tau [Bacteroides caccae ATCC
43185]
gi|392625439|gb|EIY19505.1| DNA polymerase III, subunit gamma and tau [Bacteroides caccae
CL03T12C61]
Length = 618
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 190/354 (53%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVEDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I+ + AL+ IA K++G +RDA + DQ +S G IT + + ++
Sbjct: 188 HLSYVASKEGISAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKSVIDNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L++ S+ ++ +++ D I+ L++ D+L GK LE
Sbjct: 248 YEYYFRLTDCFLANKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVGKDPVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L +A+K+ +E + R+SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCPLPFLYKAMKLCNECDLNYRISKNKRLLVELTLIQVA 360
>gi|114565606|ref|YP_752760.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114336541|gb|ABI67389.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 499
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 195/358 (54%), Gaps = 10/358 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F E+VGQ V +L +A+ G ++ YLF GPRGTGKTS ++I A A+NC
Sbjct: 5 ALYRAWRPRRFAEVVGQEKTVTALRNAVREGKLSHAYLFSGPRGTGKTSIAKIIAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L + +PC C C ++G DV E+D+ D + L + + P + K++I
Sbjct: 65 ENLSEGEPCNQCSSCQDINNGNFMDVIEIDAASNRGIDEIRDLREKVRVLPAQGKNKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L ++E V+F++ T E K+P + SR Q Y+F ++ +I
Sbjct: 125 IDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRCQVYNFRRLTTAEIT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKK-ITLSLAYELIGI 533
RL + + I + AL +A ++NG +RDA +LDQ+ S G I+ E++G+
Sbjct: 185 ERLSDVAANDGIILEPEALLLLARRANGGMRDALSMLDQIYSYKGNNSISKQDVLEVMGL 244
Query: 534 VSDDELLDLLDLALSSDTSNTV-IRARELMRSKIDPMQLISQ----LANLIMDILAGKC- 587
V D + L+ LS DT + + I + K + QL + L + ++ ++AGK
Sbjct: 245 VDDAFMAQLIAAVLSQDTPSIIGILGTAFSQGK-EAQQLAREASMFLRDFLLYLVAGKEA 303
Query: 588 -LEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
L E + FF + S+ +MQ L RAL+I+ +T +LR S+ Q L +A +++++
Sbjct: 304 DLVVAGEESQAFFEQQKSQINMQNLLRALRIMMDTADKLRFSEGQKYLLEIAFMEIAT 361
>gi|310826413|ref|YP_003958770.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum
KIST612]
gi|308738147|gb|ADO35807.1| DNA polymerase III subunits gamma and tau [Eubacterium limosum
KIST612]
Length = 477
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 182/362 (50%), Gaps = 10/362 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FD +VGQ V R L + I G V YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRYRPQDFDSVVGQEYVTRILKNQILSGRVGHAYLFSGIRGTGKTSIAKIFARAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
ED PC C C D+ E+D D + + + PP ++K++I
Sbjct: 65 EHNEDGNPCNACDTCLNIEKPGVMDIIEIDGASNRGVDEIREIREKVKYPPTMGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +H+VF++ T E +KLP + LSR Q++ I IA
Sbjct: 125 IDEVHMLTKEAFNALLKTLEEPPEHIVFILATTEPNKLPMTILSRCQRFDIKPISQERIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL---GKKITLSLAYELIG 532
++ I + ++ D+ A+DFIA + + S+RDA LLDQ+ + K IT +G
Sbjct: 185 GQIAHILEDIGVSMDREAIDFIAYRGDSSMRDALSLLDQVIDIREADKTITYEDVLAFMG 244
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL-------AG 585
+V +D++ L+ ++ D +++ + + + D + QL + + +L A
Sbjct: 245 MVDEDQIAGLVQDVVAGDKGGVLLKFKAMREAGRDSGLVFGQLIDYLRKVLIVKTTGAAS 304
Query: 586 KCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ + +E+ + ++ + L E + +LR S + + +ALL+L
Sbjct: 305 QEILGITESASQALAAVGQDVPDKRFYSMIDFLIEEKNKLRYSGLASVIVEMALLKLCDP 364
Query: 646 ES 647
+S
Sbjct: 365 DS 366
>gi|430751652|ref|YP_007214560.1| DNA polymerase III subunits gamma and tau [Thermobacillus composti
KWC4]
gi|430735617|gb|AGA59562.1| DNA polymerase III, subunit gamma/tau [Thermobacillus composti
KWC4]
Length = 604
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 176/353 (49%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ+ V+++L +AI + YLF+GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRAWRPQTFQDMVGQHHVIQTLQNAIRENRIAHAYLFNGPRGTGKTSAAKIMAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C ++G DV E+D+ D + + P R+K++I
Sbjct: 65 EHGPTPDPCNACAACEGIAAGTVLDVIEIDAASNRGIDEIRDIRDKVRYAPTEVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HV+F++ T E KLP + +SR Q++ F + +
Sbjct: 125 IDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIVSRCQRFDFRPVPLEEQV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RLRRIC EE I + AL +IA S G +RDA LL+Q + +ITL A ++ G +
Sbjct: 185 GRLRRICEEEGIEAEDDALAYIARLSEGGMRDAIGLLEQTAAFTDGRITLDGAVDVTGGI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +L + D + + L + + + L D+L K D + A
Sbjct: 245 PAERFEELAEAVRGRDAAAVMRVTEALTAAGKSADKCMEDLIVFFRDLLLLKLAPDRTAA 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ F ++L R + IL+ + ++R + T VALL++
Sbjct: 305 TERIVDVERFRNAGEGFTAERLFRMIDILNRYQNEMRFAAQPQTMFEVALLKI 357
>gi|319938988|ref|ZP_08013352.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus
1_2_62CV]
gi|319812038|gb|EFW08304.1| DNA polymerase III subunit gamma/tau [Streptococcus anginosus
1_2_62CV]
Length = 554
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 186/348 (53%), Gaps = 5/348 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKDIV 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
+ I +E I+F+ A+ IA ++ G +RDA +LDQ LSL ++T +++ E+ G
Sbjct: 184 EHIEWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S L + L+ DTS + + S + + ++ L D+L K + +
Sbjct: 244 ISLGALDAYVAAVLAHDTSVALKNLDVIFDSGKNMARFVTDLLQYFRDLLIVKTGGENTH 303
Query: 594 ARKNFFG--KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
++F K E + + A K L+E + L+ K T +T+ L
Sbjct: 304 TSESFLENLKTPQERLFELIEIATKSLAEIKNSLQ-PKIYTEMMTIRL 350
>gi|420143129|ref|ZP_14650632.1| DNA polymerase III gamma/tau subunits [Lactococcus garvieae IPLA
31405]
gi|391856934|gb|EIT67468.1| DNA polymerase III gamma/tau subunits [Lactococcus garvieae IPLA
31405]
Length = 552
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 146/256 (57%), Gaps = 1/256 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L +AI G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRKYRSQRFDEMVGQEVVATTLKNAIVNGQISHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ ++ +PC C C + G DV E+D+ N D + + + + +K++I
Sbjct: 65 PNQKEGEPCNTCDICQAITQGSLEDVIELDAASNNGVDEIREIRDKSTYAASRATYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE + +VVFV+ T EL K+P + +SR Q++ F I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPTDNVVFVLATTELQKIPATIISRVQRFAFKAITTNDIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L + +E I F+ AALD IA + G +RDA LLDQ LS K+ A + G +
Sbjct: 185 QHLAEVLADEKIEFEDAALDVIAKSAEGGMRDALSLLDQALSFSDGKLAEKDALLVTGSI 244
Query: 535 SDDELLDLLDLALSSD 550
+ + L+ + +SD
Sbjct: 245 ASEALVSYVAALTASD 260
>gi|205371943|ref|ZP_03224762.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis
m4-4]
gi|205372023|ref|ZP_03224841.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis
m4-4]
Length = 567
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 181/354 (51%), Gaps = 6/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +A+ + ++ YLF GPRGTGKTSA++I A+NC
Sbjct: 5 ALYRVWRPQTFEDVVGQQHVTQTLQNALLQDKISHAYLFSGPRGTGKTSAAKILGKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C G +DV E+D+ N + + + P + RFK++I
Sbjct: 65 ERAPIAEPCNECAACKGIMDGSIQDVIEIDAASNNGVEEIRDIRDKVKFAPSAVRFKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HV+F++ T E K+P + +SR Q++ F +I DI
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRCQRFDFKRITPRDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I E ++ ++ AL IA + G +RDA LLDQ +S K+ + A + G V
Sbjct: 185 GRMSYIANESGVDVEEQALHVIARAAEGGMRDALSLLDQAISFSDDKVMVGDALTVTGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L L + SN + EL+ DP +L+ L D+L K ++
Sbjct: 245 AQVHLNQLAKAIHEKEASNALQSLEELVNQGKDPSRLVEDLIMYFRDMLLFKTAPSLEQS 304
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ F +++ + IL+ ++++R + H +L V+L++LS
Sbjct: 305 LERVLLDEQFQSLAESIQPEQIYEYIDILNHAQQEMRFTNHTKIYLEVSLVKLS 358
>gi|255530648|ref|YP_003091020.1| DNA polymerase III subunits gamma and tau [Pedobacter heparinus DSM
2366]
gi|255343632|gb|ACU02958.1| DNA polymerase III, subunits gamma and tau [Pedobacter heparinus
DSM 2366]
Length = 602
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 190/366 (51%), Gaps = 7/366 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ + +L +AI + +LF GPRG GKT+ +RI A +NC S
Sbjct: 8 ARKYRPATFETVVGQQHITGTLKNAIKNNQLAQAFLFCGPRGVGKTTCARILAKTINCTS 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L +Q+ CG C C F +G S + E+D+ N D + SL++ +PP + ++KI+II
Sbjct: 68 LTAEQEACGTCESCVSFQTGHSFNFHELDAASNNSVDDIRSLIEQVRIPPQAGKYKIYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE + +F++ T E K+ + LSR Q + F +I+ DI+
Sbjct: 128 DEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVEDISG 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L +I E I + L IA K++G +RDA + DQ+ S K +T + + I+
Sbjct: 188 HLNKIAQRENIAVEADGLHIIAQKADGGLRDALSMFDQIVSYTNKNLTYKSVIDNLNILD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D L ++D S+T+I E++ + D I+ LA+ + ++L K L +
Sbjct: 248 YDYYFKLTQHLTATDVSHTLILFDEILNNGFDGNNFINGLASHLRNLLVAKDPQTTKLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
SE K + + + + + AL + ++ + + SK+Q + +AL+++ S L
Sbjct: 308 VSENIKQKYISQSQQTPVSFILTALNLANQCDLNYKNSKNQRLQVEMALIKMCHIPSVLQ 367
Query: 651 LNDSKL 656
L L
Sbjct: 368 LASQPL 373
>gi|329964135|ref|ZP_08301301.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT
12057]
gi|328525655|gb|EGF52684.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT
12057]
Length = 609
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 188/359 (52%), Gaps = 19/359 (5%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCMN 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFSRIGVEDTVA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + + ++ +++ D I+ L++ + D+L K LE
Sbjct: 248 YEYYFKLTDFFLDNKVGDALLLLNDVLNKGFDGSHFITGLSSHLRDLLVSKDTVTLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQK-----LSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + +A QK L RA+K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRERY------QAQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQVA 360
>gi|374992794|ref|YP_004968293.1| DNA polymerase III subunits gamma and tau [Desulfosporosinus
orientis DSM 765]
gi|357211160|gb|AET65778.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus orientis
DSM 765]
Length = 556
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 179/350 (51%), Gaps = 5/350 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F ++VGQ + ++ L+A+ +G V YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYREWRPKLFRDIVGQEHIKKTFLNALRQGKVAHAYLFSGPRGTGKTSTAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D++PC C C G + +V E+D+ + + L + L + K++I
Sbjct: 65 EHRDDEEPCNFCPSCMSIDQGSAMEVFEIDAASNRGINEIRDLRDNIKLSSIEGKHKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE VVF++ T E+ K+P + LSR Q++ F +I DI
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPPQVVFILATTEVQKIPLTILSRVQRFEFHRISAEDIQ 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
RL +C AL IA KS G +RDA +LDQ L + + Y+++G+V
Sbjct: 185 QRLAEVCNSLQREVHSDALMVIAQKSEGGLRDALSILDQCLLQSDPVGVEEVYQVLGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLEDC 591
+ L+D +S D + ++ E ++ DP Q+I +L + +L AG
Sbjct: 245 ETYSAQLVDKIISKDYAKSLGFLAEGIQQGRDPRQIIRELLEYLRQMLLASTAGTTPMVL 304
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
+ K + + ++ R + IL + E QL+ + + + L+Q
Sbjct: 305 PHIQDQLL-KQCKQVGISEILRWISILLQGEGQLKYASNARLAAELLLVQ 353
>gi|218442574|ref|YP_002380895.1| DNA polymerase III subunits gamma/tau [Cyanothece sp. PCC 7424]
gi|218175345|gb|ACK74076.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7424]
Length = 452
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 155/280 (55%), Gaps = 6/280 (2%)
Query: 300 KFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE 359
K+RP ++L+GQN + +L +AI+ + YLF G RGTGKTS RI A +LNC+ +
Sbjct: 9 KYRPQTLNDLIGQNAIATTLTNAITLSKIAPAYLFTGSRGTGKTSTGRILAKSLNCV--K 66
Query: 360 DQKP----CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D KP CG C C ++G S DV E+D+ N ++ + ++ S P R+KI+I
Sbjct: 67 DNKPTVTPCGECNSCKSIANGSSLDVIELDAASNNSAEGIRDIVSSTQFAPIGRRYKIWI 126
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE L +L +LE +V+F++ T + KL + +SR Q+++F + + I
Sbjct: 127 IDEAHALSSAATQVLLKTLEEPPINVIFILCTTDPSKLGDTIISRCQRFNFKRFNNDVIV 186
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
++L I E IN AL IA S G +RDA LL+Q+SLL +T ++L+G +S
Sbjct: 187 NQLEAIAQSEDINISYEALLLIAKHSQGGMRDATCLLEQVSLLSDNVTPVEVHQLLGTIS 246
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQL 575
+D L +LL+ S T + ++L DP+ ++ QL
Sbjct: 247 EDNLFELLNAIALSKTEPIIRIIKQLYADGKDPLVILQQL 286
>gi|317478676|ref|ZP_07937831.1| DNA polymerase III [Bacteroides sp. 4_1_36]
gi|316905187|gb|EFV26986.1| DNA polymerase III [Bacteroides sp. 4_1_36]
Length = 604
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 187/354 (52%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC+S
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCMS 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCTSFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFSRIGVEDTVA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L L + S+ ++ +++ D I+ L++ + D+L K LE
Sbjct: 248 YEYYFKLTGFFLENKISDALLLLNDVLNKGFDGSHFITGLSSHLRDLLVSKDPATLPLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRERYQAQ-AQQCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQVA 360
>gi|116493222|ref|YP_804957.1| DNA polymerase III, gamma/tau subunit [Pediococcus pentosaceus ATCC
25745]
gi|116103372|gb|ABJ68515.1| DNA polymerase III, gamma/tau subunit [Pediococcus pentosaceus ATCC
25745]
Length = 581
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 193/363 (53%), Gaps = 14/363 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ+VV R+L +A+ + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQKFDDMVGQDVVTRTLKNALITEQTSHAYLFTGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G DV E+D+ N + + + A P + +K++I
Sbjct: 65 HYLKDGEPCNECVTCKAITEGTLNDVIEIDAASNNGVEEIRDIRDKAKYAPTEADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 125 VDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPLTIISRTQRFDFKRITPAQSY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
R+ I ++ I +DQ AL IA + G +RDA +LDQ+ G +++TL A + G V
Sbjct: 185 DRMVYILDQKGIQYDQKALAIIAKAAEGGMRDALSILDQVISFGNEEVTLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIM-----DILAG 585
+ L L +TS + +++ D +LI L NL++ ++
Sbjct: 245 NQKLLDQYLTQIFKQETSAALETLHQILDEGKDGQRLIEDLIAVQRNLLLYQEDPQLVQE 304
Query: 586 KCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ L D SEA F + + +L + + L+ ++Q+R + H +L V ++LS
Sbjct: 305 QSLNDLSEA----FTEEAAMVTGVELYQMIDTLNSIQQQMRFTTHPDVYLEVLTIKLSQR 360
Query: 646 ESS 648
+++
Sbjct: 361 KTA 363
>gi|424780886|ref|ZP_18207753.1| DNA polymerase III subunits gamma and tau [Catellicoccus
marimammalium M35/04/3]
gi|422842587|gb|EKU27038.1| DNA polymerase III subunits gamma and tau [Catellicoccus
marimammalium M35/04/3]
Length = 571
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 192/353 (54%), Gaps = 8/353 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F ++VGQ + ++L A+ + ++ YLF GPRGTGKTS ++I A A+NC
Sbjct: 5 ALYRVYRSQTFADVVGQEGITKTLQQAVKQEHISHAYLFSGPRGTGKTSVAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ D +PC C C + GR DV E+D+ N D + SL + + P ++K++I
Sbjct: 65 LNPHDGEPCNQCENCQAITEGRFSDVIELDAASNNGVDEIRSLCEKSKYAPTQGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE S +V+F++ T E+ K+P + +SR+Q++ F +I IA
Sbjct: 125 IDEVHMLSKGAFNALLKTLEEPSSNVIFILATTEVHKIPATIISRTQRFEFKRISTEAIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I +E + ++ +A+ IA + G +RDA LLDQ L+ +TL + G
Sbjct: 185 KHLGVILQKEGVEYEDSAIQKIAQLAEGGMRDALSLLDQSLATTEGTLTLDAVERVTGTF 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S +EL ++ L +T + ++L+ S + + + L + ++ + D +
Sbjct: 245 STEELDLYINECLLQNTGKALQILKDLLASGKEGGRFLDDLLEEVKNLFLYRA--DTTWY 302
Query: 595 RKNF-----FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+K + F + ++ L+ AL+ +++T++ +R++ HQ +L V ++L
Sbjct: 303 QKEYQPNATFTQLAQYSNDDFLTFALQEIAKTKENMRLNGHQELYLEVMTVRL 355
>gi|375087225|ref|ZP_09733607.1| DNA polymerase III, subunit gamma and tau [Megamonas funiformis YIT
11815]
gi|374562042|gb|EHR33377.1| DNA polymerase III, subunit gamma and tau [Megamonas funiformis YIT
11815]
Length = 637
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 155/282 (54%), Gaps = 1/282 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F +L+GQ + +L +AIS G V YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRKWRPQDFSDLIGQEHISETLSNAISTGKVAHAYLFSGPRGTGKTSTAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PC C C + G DV E+D+ D + L ++ P ++K++I
Sbjct: 65 EHGPTPTPCNQCVCCQKINDGSFMDVFEIDAASNRGIDEIRDLRETVKFAPVDGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HVVF++ T E+ K+P + SR Q+Y F +I DI
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPSHVVFILATTEVHKVPITIQSRCQRYDFKRITKDDIL 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL I E +N D+ AL IA +++G +RDA LLDQ L+ ++T++ +++G+V
Sbjct: 185 KRLVMITDEMGLNADKDALSIIAIQADGGMRDALSLLDQCLAFTKDELTVTQVRKVLGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA 576
D + + D D+ + E++ + QL+++L
Sbjct: 245 GHDWVWQITDALAKKDSQTILTILDEIIAQGKEIKQLLNELV 286
>gi|291278574|ref|YP_003495409.1| DNA polymerase III gamma/tau subunits [Deferribacter desulfuricans
SSM1]
gi|290753276|dbj|BAI79653.1| DNA polymerase III, gamma/tau subunits [Deferribacter desulfuricans
SSM1]
Length = 526
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 181/360 (50%), Gaps = 6/360 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L++K+RP FDE+V Q+ +V++L +AI ++ YLF GPRG GKTS +RIFA ALNC
Sbjct: 5 ALARKYRPQSFDEIVYQDYIVKTLKNAIELNRISHAYLFTGPRGIGKTSTARIFAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LS E PC C C ++G S DV E+D D + L +S P S++KI+I
Sbjct: 65 LSPEGVNPCNKCENCVEVTNGTSLDVYEIDGASNRGIDEIRQLRESVKFLPTKSKYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F+ T + ++P + LSR Q+++F KI D +
Sbjct: 125 IDEVHMLTEAAFNALLKTLEEPPSYVIFIFATTDAHRIPATILSRCQRFNFSKIPDLKLI 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R I E I +++ A++ I S+G +RD L+DQ ++ G K+ L L+G+
Sbjct: 185 EHIRSILERENIEYEEDAVNLIVRNSDGCVRDCLSLIDQVIAYTGGKVFLDDTKYLLGLS 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
D + +L + + D + E+ +D ++ + + +L K D ++
Sbjct: 245 EDKIINELFEKIILKDNDSIKQLLSEIDLKGLDYKYVVEKFLSFTKTLLILKQFNDKNDV 304
Query: 595 -----RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
+ FF + D L ++L + LR + + +L + E L
Sbjct: 305 SLTNDERVFFDRLLDYVDDGYLFAVHQVLLKMYNDLRFYSFDKDIFEIGVFKLLNLEKIL 364
>gi|189423436|ref|YP_001950613.1| DNA polymerase III subunits gamma and tau [Geobacter lovleyi SZ]
gi|189419695|gb|ACD94093.1| DNA polymerase III, subunits gamma and tau [Geobacter lovleyi SZ]
Length = 551
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 185/382 (48%), Gaps = 9/382 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F L GQ V R+L +AI G V +LF G RG GKTS +RI A ALNC
Sbjct: 6 LARKYRPQTFAGLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+PC +C C + G S DV E+D D V L ++ P SR+KI+II
Sbjct: 66 QGVTLEPCNVCPHCREITDGSSTDVFEIDGASNTGVDDVRELRDNSRYLPSHSRYKIYII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F+ T E KLP + LSR Q++ F ++ I
Sbjct: 126 DEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFKRVPLIKIVG 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
RLR I +E I + AAL IA K +GS+RD+ DQ L+ G + + L+G+V
Sbjct: 186 RLREIADQEGIVINDAALALIARKGDGSMRDSITCFDQVLAFCGNTVAVEDVATLVGVVD 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQ----LISQLANLIMDILAGKCLE-- 589
L +L + DT + R + + Q LIS NL++ K E
Sbjct: 246 RRLLAELSSAVFAGDTQGALEGVRRVDAFGYNVRQFTQELISHFRNLLVIRSVPKPGEIL 305
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL 649
D +EA + E + R L +L + E ++ + L + LL++++ + L
Sbjct: 306 DLAEAELEELRQQAGEQSAADIQRRLTLLVKAESEMAHASFPRLLLEMVLLKMATLQPVL 365
Query: 650 DLNDSKLCLRYAHDKDGDSHCT 671
++ +L R H + G + T
Sbjct: 366 PIH--QLLDRIKHLETGVAQTT 385
>gi|163782796|ref|ZP_02177792.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159881917|gb|EDP75425.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 456
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 153/268 (57%), Gaps = 1/268 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
++K+RP FF E+VGQ V VR L +A+ V+ YLF GPRG GKT+ +RI A +LNCL
Sbjct: 5 FARKYRPKFFREVVGQEVPVRILKNAVKNDRVSHAYLFAGPRGVGKTTIARILAKSLNCL 64
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ ++ +PCG C C G D+ E+D+ D + +L ++ P +FK++II
Sbjct: 65 NPKEGEPCGECENCQEIDRGNFPDLIEMDAASNRGIDDIRALREAVSYTPIKGKFKVYII 124
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + +L +LE VF++ T E +K+ + LSR Q+ F ++ D +
Sbjct: 125 DEAHMLTKEAFNALLKTLEEPPPRTVFILCTTEYEKILPTILSRCQRIIFGRVSDDKVID 184
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ IC E + ++ AL IA S G +RDA LLDQ S++G+ K+T +GI+S
Sbjct: 185 YLKDICEREGLECEEEALKSIAQASEGCMRDAASLLDQASVIGEGKVTQEAVESFLGILS 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMR 563
+++ + + L L+SDT V EL R
Sbjct: 245 AEKVREFIRLLLNSDTDGAVRWLNELYR 272
>gi|422823748|ref|ZP_16871936.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK405]
gi|422826183|ref|ZP_16874362.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK678]
gi|324993075|gb|EGC24995.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK405]
gi|324995619|gb|EGC27531.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK678]
Length = 556
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 177/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ ++ +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKEGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
S + I +E I+F++ + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 SHIEWILEQEGIDFEKEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHVSELFLENL 312
>gi|315221642|ref|ZP_07863561.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
F0211]
gi|315189293|gb|EFU22989.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
F0211]
Length = 554
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 186/348 (53%), Gaps = 5/348 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKDIV 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
+ I +E I+F+ A+ IA ++ G +RDA +LDQ LSL ++T +++ E+ G
Sbjct: 184 EHIEWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S L + L+ DTS + + S + + ++ L D+L K + +
Sbjct: 244 ISLGALDAYVAAVLAHDTSVALKNLDVIFDSGKNMARFVTDLLQYFRDLLIVKTGGENTH 303
Query: 594 ARKNFFG--KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
++F K E + + A K L+E + L+ K T +T+ L
Sbjct: 304 TSESFLENLKTPQERLFELIEIATKSLAEIKNSLQ-PKIYTEMMTIRL 350
>gi|281492850|ref|YP_003354830.1| DNA polymerase III subunit gamma and tau [Lactococcus lactis subsp.
lactis KF147]
gi|281376502|gb|ADA65988.1| DNA polymerase III subunit, gamma/tau [Lactococcus lactis subsp.
lactis KF147]
Length = 552
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 144/246 (58%), Gaps = 1/246 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRKYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N D + + + + +K++I
Sbjct: 65 PNQVDGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIREIRDKSTYAASQATYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVFV+ T EL K+P + +SR Q++ F I GDI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSITTGDIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ L +I +E + FD ALD IA + G +RDA LLDQ LS K+ + A + G +
Sbjct: 185 TYLAKIMADEGLEFDGKALDVIAKAAEGGMRDALSLLDQALSFSSGKLEENDALLVTGSI 244
Query: 535 SDDELL 540
+ D L+
Sbjct: 245 AADALV 250
>gi|283796874|ref|ZP_06346027.1| DNA polymerase III, gamma and tau subunit [Clostridium sp. M62/1]
gi|291075280|gb|EFE12644.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. M62/1]
gi|295089888|emb|CBK75995.1| DNA polymerase III, subunits gamma and tau [Clostridium cf.
saccharolyticum K10]
Length = 555
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 192/375 (51%), Gaps = 10/375 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F ++ GQ+ +V++L + I+ G + YLF G RGTGKTS ++IFA A+NC
Sbjct: 5 ALYRKWRPVSFGDVKGQDPIVKTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C G S +V E+D+ N + + + + PP ++++I
Sbjct: 65 EHPVDGSPCNECETCRHIMEGSSLNVVEIDAASNNGVENIREIREQVQYPPTEGTYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E+ K+P + LSR Q+Y F +I IA
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRISLDTIA 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
RLR + E I ++ AL ++A ++GS+RDA LLDQ + G+ +T E++G
Sbjct: 185 DRLRELTEAEHIGVEERALRYVAKAADGSMRDALSLLDQCAAFHFGETLTYDNVLEVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC-- 591
V + +L A+ T + + R E++ + Q ++ + ++L + +D
Sbjct: 245 VDNSVFSELFRAAVEGRTRDCICRIEEIIIQGRELSQFVNDFVWYLRNLLIVQSADDAEN 304
Query: 592 ----SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
S + + AD L R ++I SE Q+R + + L +A ++L +
Sbjct: 305 MLDMSAENIRLLKEEAALADADTLMRYIRIFSELSGQMRYASQKRVLLEIAFIKL--TRP 362
Query: 648 SLDLNDSKLCLRYAH 662
S++ N L R A
Sbjct: 363 SMEQNFDSLLQRIAE 377
>gi|341820727|emb|CCC57026.1| DNA-directed DNA polymerase [Weissella thailandensis fsh4-2]
Length = 590
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 182/350 (52%), Gaps = 2/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ +V ++L +AI G +T YLF+GPRGTGKTSA++IFA A+NC
Sbjct: 12 ALYRTWRPQKFSDMIGQEIVTKTLKNAIITGQITHAYLFNGPRGTGKTSAAKIFAKAINC 71
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D +P G C C +G D+ E+D+ N D + + + P +++K++I
Sbjct: 72 LHPVDGEPDGTCEICQAADNGTLGDIIELDAASNNGVDEIREIREDVTYAPTQAKYKVYI 131
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 132 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPATIISRTQRFDFKRINAQSAY 191
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I + +D+AAL IA ++G +RDA +LDQ LS +TL A + G V
Sbjct: 192 ERMIYILDQRGNTYDEAALKVIANAADGGMRDALTILDQALSFGDGHVTLENALLVTGSV 251
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILA-GKCLEDCSE 593
+ L ++ ++ +T + + E++ D + + L + D+L + E +
Sbjct: 252 TQTLLAKYVEAVVNQNTKQGLAKLSEVLDEGKDANRFVEDLISYARDLLLYTEAPELVTL 311
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
F + + L+ T++QLR + +L V ++LS
Sbjct: 312 VPDETFTQLAKTQSANIWYNMIDTLNNTQQQLRFTNRPAIYLEVLTVKLS 361
>gi|94969002|ref|YP_591050.1| DNA polymerase III subunits gamma and tau [Candidatus Koribacter
versatilis Ellin345]
gi|94551052|gb|ABF40976.1| DNA polymerase III, tau subunit [Candidatus Koribacter versatilis
Ellin345]
Length = 632
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 195/369 (52%), Gaps = 15/369 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F E++GQ+ V R+L +AI + + Y+F G RG GKT+ +RI A ALNC
Sbjct: 6 LARKYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAMALNCQ 65
Query: 357 SLED--QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
S + +PCG+C C +G+S DV E+D+ D + L ++A P RFKI+
Sbjct: 66 SADHPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIRELREAARYRPARDRFKIY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
I+DE + + +L +LE H+VF+M T E + +P++ SR Q + F +K DI
Sbjct: 126 ILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQHFSFHAVKFDDI 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGI 533
+LR I +E I + AL +A +GS+RDA ++DQ ++ G ++ L+G
Sbjct: 186 VLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQAIAACGNQLKTDDVRGLMGT 245
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGK--- 586
VS D L D+++ ++ + + + +L+ P+ Q L N ++ +AGK
Sbjct: 246 VSSDVLEDIMNGVHANSSESVLTTIDKLLIEGHSPLHFAKQAVRFLRNAMVAKVAGKDSA 305
Query: 587 CLEDCSEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
L+ S+ R+ + SE D L+R L+I+ T L + Q L + LL+L
Sbjct: 306 LLQISSDERERVARVAEQFSEED---LARFLQIMLRTHSDLGYKQEQRFHLELGLLKLVH 362
Query: 645 SESSLDLND 653
++ L L +
Sbjct: 363 AQRMLPLEE 371
>gi|392988823|ref|YP_006487416.1| DNA polymerase III subunits gamma and tau [Enterococcus hirae ATCC
9790]
gi|392336243|gb|AFM70525.1| DNA polymerase III subunits gamma and tau [Enterococcus hirae ATCC
9790]
Length = 582
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 191/352 (54%), Gaps = 5/352 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R F+++VGQ V ++L +AI + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFEDIVGQKAVTQTLKNAIVSHKTSHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C ++G DV E+D+ N + + + A P + +KI+I
Sbjct: 65 PNSQDGEPCNHCEMCQSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTKATYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++V+F++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPKENVIFILATTEPHKIPATIISRTQRFDFKRINAADIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L I + + +++ AL IA + G +RDA ++DQ +S +T+ A ++ G +
Sbjct: 185 EHLAYILKQSDVQYEEPALGVIARAAEGGMRDALSIMDQAISFSNGIVTVDDAMQVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+++ + + L ++++ + +++ + + + + L D+L A + +
Sbjct: 245 TNEMMDEFLGACVNNEVPKALESLTDILAAGKEARRFLEDLLQYCRDLLMYQQAPNLVAE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + F + E +L + + ILSET+ ++R + T +L VA ++L
Sbjct: 305 RTTSLREPFVELAKEVPAPRLFQMIHILSETQNEIRFTNSATIYLEVATVKL 356
>gi|319900098|ref|YP_004159826.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108]
gi|319415129|gb|ADV42240.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108]
Length = 611
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 186/353 (52%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFSRIGVEDTVA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYQSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L D L + S+ ++ +++ D I+ L++ + D+L K L +
Sbjct: 248 YEYYFKLTDFFLENKVSDALLLLNDVLNKGFDGSHFITGLSSHLRDLLVSKDAATLSLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + + + + L R++K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRERYRVQAQKCPLPFLYRSMKLCNDCDLNYRTSKNKRLLVELTLIQVA 360
>gi|227529515|ref|ZP_03959564.1| DNA polymerase III, subunits gamma and tau [Lactobacillus vaginalis
ATCC 49540]
gi|227350600|gb|EEJ40891.1| DNA polymerase III, subunits gamma and tau [Lactobacillus vaginalis
ATCC 49540]
Length = 609
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 186/358 (51%), Gaps = 6/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD++VGQ VV R+L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDDMVGQQVVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC C C ++G+ DV E+D+ N + + + A P + +K++I
Sbjct: 65 HHSQDGEPCNECDTCKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR Q++ F +I D
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISATDSF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I ++ + +D+ AL IA + G +RDA +LDQ LS ++ L A + G V
Sbjct: 185 ERMKYILDQKKVEYDEKALWVIANAAEGGMRDALSILDQVLSFSDNQVKLDDALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ L ++ + ++++ D + I L + I D+L + D +
Sbjct: 245 TKQLLKKYFLEVCQGQSAPALETMKQILGEGKDGQRFIEDLISFIRDVLLYQESPDLIKV 304
Query: 595 -----RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+ F + + A L R + L+ + ++R + H +L V ++LS E+
Sbjct: 305 ESTGLKDEDFAELSKAASSTILYRMIDDLNNIQMEMRFTTHPDVYLEVLTVKLSQPEA 362
>gi|420264328|ref|ZP_14766961.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus sp. C1]
gi|394768704|gb|EJF48610.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus sp. C1]
Length = 573
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 191/358 (53%), Gaps = 5/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIDQNQISHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNQVNGEPCNECDMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++VVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRTQRFDFKRINTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L + IN++ AL IA + G +RDA + DQ ++ +T A E+ G +
Sbjct: 185 GHLETVLTTSEINYEAEALQIIARAAEGGMRDALSITDQAIAFSDGTVTTQDALEVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
S + + L+ + ++ + REL+ S + +L+ L +L+M A + L +
Sbjct: 245 SYEMMDRLMQACGEKEVADALATLRELLASGKEARRLLENLLVYCRDLLMYQQAPQLLSE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
S F K+ + +L++T+ ++R + + T +L VA+++L++ S
Sbjct: 305 KSLQLTGAFQTLAKITPPAKIYHWITVLNDTQNEVRFTNNPTIYLEVAVVKLANDPES 362
>gi|422858638|ref|ZP_16905288.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1057]
gi|327459781|gb|EGF06121.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK1057]
Length = 556
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 177/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ ++ +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKEGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
S + I +E I+F++ + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 SHIEWILEQEGIDFEKEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHVSELFLENL 312
>gi|427384211|ref|ZP_18880716.1| DNA polymerase III, subunit gamma and tau [Bacteroides oleiciplenus
YIT 12058]
gi|425727472|gb|EKU90331.1| DNA polymerase III, subunit gamma and tau [Bacteroides oleiciplenus
YIT 12058]
Length = 617
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC+S
Sbjct: 8 ARKYRPATFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCMS 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRINVDDTVA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G I+ E + ++
Sbjct: 188 HLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHISYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L D L++ N ++ +++ D ++ L++ D+L K L +
Sbjct: 248 YEYYFRLTDHFLANQVGNALLLLNDVLNKGFDASHFVTGLSSHFRDLLVSKDPATLALLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + + + + L RA+K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRERYQAQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQVA 360
>gi|325570730|ref|ZP_08146456.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus
casseliflavus ATCC 12755]
gi|325156576|gb|EGC68756.1| DNA polymerase III, gamma/tau subunit DnaX [Enterococcus
casseliflavus ATCC 12755]
Length = 573
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 191/358 (53%), Gaps = 5/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +R FD++VGQ + ++L +AI + ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRSQRFDDVVGQKAITQTLKNAIDQNQISHAYLFTGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N + + + A P + +K++I
Sbjct: 65 PNQVNGEPCNECDMCRSITAGTQEDVIEIDAASNNGVEEIRFIRDRANYAPTQAEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE ++VVF++ T E K+P + +SR+Q++ F +I DI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPRKNVVFILATTEPHKIPATIISRTQRFDFKRINTQDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L + IN++ AL IA + G +RDA + DQ ++ +T A E+ G +
Sbjct: 185 GHLETVLTTSEINYEAEALQIIARAAEGGMRDALSITDQAIAFSDGTVTTQDALEVTGSL 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA----NLIMDILAGKCLED 590
S + + L+ + ++ + REL+ S + +L+ L +L+M A + L +
Sbjct: 245 SYEMMDRLMQACGEKEVADALATLRELLASGKEARRLLENLLVYCRDLLMYQQAPQLLSE 304
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
S F K+ + +L++T+ ++R + + T +L VA+++L++ S
Sbjct: 305 KSLQLTEAFQTLAKITPPAKIYHWITVLNDTQNEVRFTNNPTIYLEVAVVKLANDPES 362
>gi|422851789|ref|ZP_16898459.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK150]
gi|325694344|gb|EGD36257.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK150]
Length = 556
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 174/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKK-ITLSLAYELIGI 533
+ I E I+F+Q + IA ++ G +RDA +LDQ LSL + +T +A E+ G
Sbjct: 184 GHIEWILEREGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENCLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDTVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHVSELFLENL 312
>gi|121533379|ref|ZP_01665207.1| DNA polymerase III, subunits gamma and tau [Thermosinus
carboxydivorans Nor1]
gi|121307938|gb|EAX48852.1| DNA polymerase III, subunits gamma and tau [Thermosinus
carboxydivorans Nor1]
Length = 351
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 160/297 (53%), Gaps = 1/297 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP FD LVGQ+ V +L +AI G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRQWRPQDFDSLVGQDHVRTTLKNAIIAGKIAHAYLFAGPRGTGKTSTAKILAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L PC C C +SG S DV E+D+ D + L ++ P R+K++I
Sbjct: 65 LHGPTPNPCNHCPHCERINSGASMDVFEIDAASNRGIDEIRDLRETVKFAPVDGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HVVF++ T E K+P + SR Q+Y F +I +I
Sbjct: 125 IDEVHMLTPEAFNALLKTLEEPPAHVVFILATTEPHKIPATIHSRCQRYDFRRIGVKEIE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGIV 534
RL + + +N AL IA ++G +RDA +LDQ + L +T++ +L+G++
Sbjct: 185 GRLAEVAAKNNLNITPDALKLIAVHADGGMRDALSILDQCTALDDTAVTVTHVRQLLGLI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
+ + + + D++ ++ EL+ D QL+ +LA + ++ K D
Sbjct: 245 GHEGIWRITAALANRDSTAVLLALDELVALGKDVRQLLLELAQHLRSLMLFKAAPDV 301
>gi|336065256|ref|YP_004560114.1| DNA polymerase III subunits gamma and tau [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|334295202|dbj|BAK31073.1| DNA polymerase III, gamma and tau subunits [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 600
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 206/375 (54%), Gaps = 33/375 (8%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL +K+RP DE+VGQ VV L ++I++ ++ YLF GPRGTGKTS +++FA A+NC
Sbjct: 5 SLYRKYRPAHLDEVVGQEHVVNVLKNSITKNKISHAYLFCGPRGTGKTSIAKLFARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ DQ CG C C + G D+ E+D+ N D + L++ P ++K++I
Sbjct: 65 EN-PDQVICGTCDNCLAVADGTHPDLIEIDAASNNGVDEIRGLIEKVKYTPILGKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HVVF++ T E+ K+ + +SR Q+Y F +I + DIA
Sbjct: 124 IDEVHMLSQGAFNALLKTLEEPPSHVVFILATTEIHKVLPTIISRCQRYDFNRIGEVDIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RL + E + +Q IA+ S G +R+A +L+Q +L +IT++ Y+ GI+
Sbjct: 184 KRLDYVLNNENVEAEQGVSKLIASLSGGGLRNALTILEQAIVLADDQITVNQIYDTNGII 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ----LANLIMDILAGKCLED 590
+D + ++L D IR ++ M + ++ + ++++ + L+MD++ G L+D
Sbjct: 244 TDQDKINLFD----------SIREQQ-MEALVNQIAMMNEKSVNIDRLMMDLVGG--LKD 290
Query: 591 C---SEARKNFFGKHTSEADMQKLSRAL----------KILSETEKQLRMSKHQTTWLTV 637
S + + S + L+ L K+LS T+K ++ S++Q+ + V
Sbjct: 291 SIIYSHTKSDSLVNENSLMFIHYLAETLQVHERLKVIEKLLSYTDK-MKFSQNQSIYFEV 349
Query: 638 ALLQLSSSESSLDLN 652
A++ + +S S+ ++N
Sbjct: 350 AMVDVFNSFSNKNVN 364
>gi|259501365|ref|ZP_05744267.1| DNA polymerase III [Lactobacillus iners DSM 13335]
gi|259167218|gb|EEW51713.1| DNA polymerase III [Lactobacillus iners DSM 13335]
Length = 605
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 27 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 86
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 87 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 146
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 147 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 206
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 207 ARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGYA 266
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 267 DQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 325
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ +E LR + Q L V ++++S+ +
Sbjct: 326 FLSANYL-EQLRLISTQVLSQTLQLANEALNSLRYTNQQQIPLKVFVVRISTQD 378
>gi|269216238|ref|ZP_06160092.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC
700122]
gi|269130497|gb|EEZ61575.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC
700122]
Length = 862
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 185/366 (50%), Gaps = 14/366 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++VGQ + R++ +A+ V+ YLF GPRGTGKT+ +R+ A AL C
Sbjct: 4 ALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALLC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDS-----VRINRSDRVGSLMKSAFLPPFSSR 410
P G C +C + G DV E+D+ V R + +G + P R
Sbjct: 64 EKGPTPAPDGECEQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQ----FAPVRGR 119
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
+KI+IIDE +L + +L +LE HVVF++ T + K+P + SR Q++ F ++
Sbjct: 120 YKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFDFHRLA 179
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYE 529
+ +I +RL +C E + F+ AL+ A ++ G +RDA L+QL G+ ++T+ +A +
Sbjct: 180 NEEIIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGEGRVTMQVALD 239
Query: 530 LIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD----ILAG 585
++G + +++ D++ D + E + + D Q LA+ + D IL
Sbjct: 240 VLGALDSNDMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDLASYVRDLYAFILTD 299
Query: 586 KCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
LE S A +L+ L IL + +LR S + +AL +++
Sbjct: 300 GALEPRSSATNEQLAAQAGLFGPDRLAHVLSILGDVCAELRSSANPRLSFEIALTRMARP 359
Query: 646 ESSLDL 651
ES L L
Sbjct: 360 ESDLTL 365
>gi|357236416|ref|ZP_09123759.1| DNA polymerase III subunit gamma and tau [Streptococcus criceti
HS-6]
gi|356884398|gb|EHI74598.1| DNA polymerase III subunit gamma and tau [Streptococcus criceti
HS-6]
Length = 563
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 149/258 (57%), Gaps = 2/258 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F+ELVGQ VV +L A++ G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFEELVGQEVVATTLRQAVASGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C + G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQVDGEPCNQCDICHDITEGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQAAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLG-KKITLSLAYELIGI 533
+ I +E+I ++ AL+ IA ++ G +RDA +LDQ LSL ++T ++A E+ G
Sbjct: 184 QHMAEILDKESIAYEDEALNLIARQAEGGMRDALSILDQALSLSADNQVTAAIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDT 551
V L D L + D+
Sbjct: 244 VGQAALDDYLAHLIQKDS 261
>gi|421874133|ref|ZP_16305740.1| DNA polymerase III, subunits gamma and tau [Brevibacillus
laterosporus GI-9]
gi|372456788|emb|CCF15289.1| DNA polymerase III, subunits gamma and tau [Brevibacillus
laterosporus GI-9]
Length = 593
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 176/345 (51%), Gaps = 5/345 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ V +L +A+ G ++ YLF+GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRVYRPQTFGDVIGQTHVTTTLQNALREGRLSHAYLFNGPRGTGKTSAAKIMAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ + + + P ++K++I
Sbjct: 65 QNPQDGEPCNQCPACIAITEGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSEVKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HV+F++ T E KLP + +SR Q++ F +I ++
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPGHVLFILATTEPHKLPATIISRCQRFDFHRISLAEMT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL+ IC + I ++ AL +A + G +RDA LLDQ +S G +++ S ++ G V
Sbjct: 185 QRLQHICDAQQIEAEEQALKLVAKMAEGGMRDALSLLDQAISYSGNQVSASDVLKITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S L + + + + ++M DP Q + L D+L K + E
Sbjct: 245 SQAYFSTLGRMISEQNVTGVMEELEKIMSQGKDPEQFLQDLLFYFRDMLLYKTAPNLEEI 304
Query: 595 RKNFFGKHTSEADMQKLSR-ALKILSETEKQLRMSKHQTTWLTVA 638
+ E + +R AL +L E +QL + Q W T A
Sbjct: 305 MERTL---IDEKFPEVANRFALPVLYEVIEQLNQALTQLKWSTFA 346
>gi|354559342|ref|ZP_08978592.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
metallireducens DSM 15288]
gi|353542931|gb|EHC12391.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
metallireducens DSM 15288]
Length = 556
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 184/350 (52%), Gaps = 3/350 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ V ++L +A+ + + YLF GPRGTGKT+A+++ A ALNC
Sbjct: 5 ALYREWRPKNFSEMVGQEHVTKTLTNALKQEKIAHAYLFSGPRGTGKTTAAKVLAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C G + +V E+D+ D + L ++ L ++K++I
Sbjct: 65 ENPGGVEPCNQCSSCLSIDQGNAMEVLEIDAASNRGIDEIRELRENVRLSAGEGKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + VVF++ T E+ K+P + LSR Q++ F +I I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPKRVVFILATTEVQKIPLTILSRVQRFEFHRIPLEQIE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+RL+ +C AL IA KS G +RDA +LDQ LL I + Y+++G+V
Sbjct: 185 TRLQEVCQSIDRTVLPEALKIIAQKSEGGLRDALSILDQCLLLDGDIGVEHVYQVLGMVG 244
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKCLEDCS 592
++ LLD+ L+ D + + E + DP Q++ + + +L + + +
Sbjct: 245 EEYSAQLLDILLTRDYAQALGLLTEGINQGRDPRQILKEFMEYLRQVLLYVSTHRVPFVA 304
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
K + + +A M+ + + + IL E QL+ + + + L+Q+
Sbjct: 305 PQLKEKIVEQSEQAGMRLVLQWISILLHGESQLKYASNARLATEMLLVQM 354
>gi|345304445|ref|YP_004826347.1| DNA polymerase III subunits gamma and tau [Rhodothermus marinus
SG0.5JP17-172]
gi|345113678|gb|AEN74510.1| DNA polymerase III, subunits gamma and tau [Rhodothermus marinus
SG0.5JP17-172]
Length = 608
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 192/365 (52%), Gaps = 11/365 (3%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F ELV Q V +L +A+ + YLF GPRG GKT+A+R+ A A+NC +
Sbjct: 10 ARKYRPQLFRELVAQEHVTETLKNALRLNRLGHAYLFSGPRGVGKTTAARLLAKAINCQT 69
Query: 358 -LEDQK----PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
LE+++ PC C C F GRS +V E+D+ N+ + V L ++ +PP +R K
Sbjct: 70 PLEEREDRAEPCRRCEACVAFEEGRSLNVFEIDAASNNKVEDVRELRETVRVPPQGARKK 129
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
++IIDE +L + +L +LE H +F+ T E K+ + LSR Q++ F +I
Sbjct: 130 VYIIDEVHMLSNAAFNALLKTLEEPPPHALFIFATTEPHKVLPTILSRCQRFDFRRIPVE 189
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELI 531
I +RLR IC E + D +L +A K +G++RDA DQ +SL G + + + +
Sbjct: 190 AIVARLREICAAEGVEADDESLMLLARKGDGALRDALSAFDQAVSLCGTTLRYAELAQAL 249
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC 591
G+V D + D + + + + +++RS D + LA + ++L + + D
Sbjct: 250 GVVDLDLYFAVTDHVRTGNGAGMLAVVEQVVRSGYDLQEFAIGLAEHLRNLLVARTMPDL 309
Query: 592 S-----EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
S EA + + + + L R L ++++ E +L+ S L + LL+++S
Sbjct: 310 SLIEAGEATRRRYAEAARAFEEADLLRLLGLVADLESRLKSSAQPRLQLELTLLRMASLP 369
Query: 647 SSLDL 651
++DL
Sbjct: 370 HAVDL 374
>gi|224536875|ref|ZP_03677414.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521499|gb|EEF90604.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus
DSM 14838]
Length = 615
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 186/353 (52%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPTTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRIGVEDTVA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G I+ E + ++
Sbjct: 188 HLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHISYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L D L++ S+ ++ +++ D ++ L++ D+L K L +
Sbjct: 248 YEYYFRLTDHFLANQVSDALLLLNDVLNKGFDASHFVTGLSSHFRDLLVSKDPATLALLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + + + + L RA+K+ ++ ++ R SK++ + + L+Q++
Sbjct: 308 VGASIRERYQSQAQKCPLPFLYRAMKLCNDCDQNYRASKNKRLLVELTLIQVA 360
>gi|148543563|ref|YP_001270933.1| DNA polymerase III subunits gamma and tau [Lactobacillus reuteri
DSM 20016]
gi|184152970|ref|YP_001841311.1| DNA polymerase III gamma and tau subunits [Lactobacillus reuteri
JCM 1112]
gi|227363477|ref|ZP_03847599.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri
MM2-3]
gi|325681913|ref|ZP_08161431.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri
MM4-1A]
gi|148530597|gb|ABQ82596.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri
DSM 20016]
gi|183224314|dbj|BAG24831.1| DNA polymerase III gamma and tau subunits [Lactobacillus reuteri
JCM 1112]
gi|227071491|gb|EEI09792.1| DNA polymerase III, subunits gamma and tau [Lactobacillus reuteri
MM2-3]
gi|324978557|gb|EGC15506.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus reuteri
MM4-1A]
Length = 611
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 193/363 (53%), Gaps = 8/363 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD+LVGQ +V R+L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+D +PC C C ++G+ DV E+D+ N + + + A P + +K++I
Sbjct: 65 HHSKDGEPCNECEICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR Q++ F +I D
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISAEDAF 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I ++ + +D+ AL IA + G +RDA +LDQ LS ++ L A + G V
Sbjct: 185 NRMKYILDQKKVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDNEVKLDDALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRA-RELMRSKIDPMQLISQLANLIMDILAGK-----CL 588
+ +LL L +S T + ++++ D + I L + I DIL +
Sbjct: 245 T-KQLLKKYFLEISKHEGATALDTMKDILDEGKDGQRFIEDLISFIRDILLYQESPSLIS 303
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + ++ F + A L R + L+ ++++R + H +L V ++L+ E
Sbjct: 304 VESTGLKQEDFEEIVQLASSATLYRMIDELNNIQEEMRFTTHPDVYLEVLTIKLAQIEPQ 363
Query: 649 LDL 651
+L
Sbjct: 364 KNL 366
>gi|330996185|ref|ZP_08320075.1| DNA polymerase III, subunit gamma and tau [Paraprevotella
xylaniphila YIT 11841]
gi|329573689|gb|EGG55280.1| DNA polymerase III, subunit gamma and tau [Paraprevotella
xylaniphila YIT 11841]
Length = 604
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 189/353 (53%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ FD +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NCL
Sbjct: 8 ARKYRPSAFDAVVGQEALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINCLH 67
Query: 358 LE-DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + C C C F+ RS ++ E+D+ N + + +L++ +PP R+K+FII
Sbjct: 68 PSGNGEACDECESCKAFNEQRSLNIHELDAASNNSVEEIRALIEKVRIPPQVGRYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +V+F++ T E K+ + LSR Q Y F ++ I +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQVYDFNRMSVQAIVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E ++ AL+ IA K++G +RDA + DQ +S G +T E + ++
Sbjct: 188 HLKFVADKEGYAYEPEALNIIAQKADGGMRDALSIFDQTVSFTGGNLTYKKVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L D L ++ + ++ E++ + I+ LA+ + D+L L +
Sbjct: 248 YEYYFRLTDHFLKNEAAQCMLVFNEILEKGFEGSHFITGLASHLRDLLVSHDAVTLPLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S++ + + + + + L RA+K+ S+ + R SK++ + + L+QLS
Sbjct: 308 VSDSIRARYQEQSQRCTPKFLYRAIKLCSDCDLNYRASKNKRLLVEITLIQLS 360
>gi|433448996|ref|ZP_20411861.1| DNA polymerase III subunits gamma and tau [Weissella ceti NC36]
gi|429539385|gb|ELA07422.1| DNA polymerase III subunits gamma and tau [Weissella ceti NC36]
Length = 590
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 186/351 (52%), Gaps = 4/351 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +L+GQ VV ++L + I G +T YLF+GPRGTGKTSA++IFA A+NC
Sbjct: 12 ALYRTWRPQKFSDLIGQEVVTKTLKNTIESGQITHAYLFNGPRGTGKTSAAKIFAKAVNC 71
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L + +P G C C +G DV E+D+ N D + + + P +++K++I
Sbjct: 72 LHPDHGEPDGTCEICLAADAGTLGDVVELDAASNNGVDEIREIREDVNYAPTQAKYKVYI 131
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I
Sbjct: 132 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPQKIPATIISRTQRFDFKRIDAKASY 191
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I +D++AL IA ++G +RDA +LDQ LS ITL A + G V
Sbjct: 192 DRMVHILNARGNAYDESALRVIANAADGGMRDALSILDQVLSFGDGSITLDNALLVTGSV 251
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE- 593
+ L + L ++ DT + + +++ + D + I L + D+L D
Sbjct: 252 TQTLLGEYLQAVVAHDTQAALGKLSDVLAAGKDAQRFIEDLISYARDLLLYTEAPDLITL 311
Query: 594 -ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+NF SE Q + +L++T++QLR + + +L V ++LS
Sbjct: 312 VPDENFQEMAKSEKP-QVWYNMIDVLNDTQQQLRYTNRPSIYLEVLTVKLS 361
>gi|339624521|ref|ZP_08660310.1| DNA polymerase III subunits gamma and tau [Fructobacillus fructosus
KCTC 3544]
Length = 666
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 196/366 (53%), Gaps = 24/366 (6%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F E+VGQ V+ ++L +AI + YLF GPRGTGKTSA++IFA +N
Sbjct: 5 ALYRVYRPKTFSEMVGQEVITKTLQNAIDQHQTGHAYLFAGPRGTGKTSAAKIFAREVNG 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSR-DVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
+ DQ +G+S+ D+ E+D+ N D + S+ SA P + +KI+
Sbjct: 65 IG-PDQ-------------AGQSQPDIIEIDAASNNGVDEIRSIRDSANYAPIEAPYKIY 110
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE V F++ T E+ K+P + LSR+Q++ F ++ + I
Sbjct: 111 IIDEAHMLSTGAFNALLKTLEEPPAQVKFILATTEIQKMPATILSRTQRFEFKRLSNQTI 170
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGI 533
+RL I +E ++++AALD +A + G +RDA ++DQ+ G K+TL A + G
Sbjct: 171 KNRLVEILKQEKQDYEEAALDVVATAAEGGMRDALSIMDQVIAFGPDKVTLDNALTVTGS 230
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
V D++L L+ ++ T+ + +++ S D + +S L + D++ D +
Sbjct: 231 VDIDQVLAYLNQVMTGQTAVALETLSQILLSGKDANRFLSDLIATLRDVMLVDLAPDLVK 290
Query: 594 ARK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
A+ F K +S+ +Q++ L+++ +T+ L S +L + +QL+ +
Sbjct: 291 AKSKESDLKAFLKASSQEQIQEM---LQVIDQTKTALAQSLQSDIYLEILTVQLAQKSNP 347
Query: 649 LDLNDS 654
+ N S
Sbjct: 348 ANANTS 353
>gi|339006681|ref|ZP_08639256.1| DNA polymerase III subunit gamma/tau [Brevibacillus laterosporus
LMG 15441]
gi|338775890|gb|EGP35418.1| DNA polymerase III subunit gamma/tau [Brevibacillus laterosporus
LMG 15441]
Length = 593
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 176/345 (51%), Gaps = 5/345 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ V +L +A+ G ++ YLF+GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRVYRPQTFGDVIGQTHVTTTLQNALREGRLSHAYLFNGPRGTGKTSAAKIMAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ + + + P ++K++I
Sbjct: 65 QNPQDGEPCNQCPACIAITEGSVTDVLEIDAASNRGVEEIRDIRDKVKFAPSEVKYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HV+F++ T E KLP + +SR Q++ F +I ++
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPGHVLFILATTEPHKLPATIISRCQRFDFHRISLAEMT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL+ IC + I ++ AL +A + G +RDA LLDQ +S G +++ S ++ G V
Sbjct: 185 QRLQHICDAQQIEAEEQALKLVAKMAEGGMRDALSLLDQAISYSGNQVSASDVLKITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S L + + + + ++M DP Q + L D+L K + E
Sbjct: 245 SQAYFSTLGRMISEQNVTGVMEELEKIMSQGKDPEQFLQDLLFYFRDMLLYKTAPNLEEI 304
Query: 595 RKNFFGKHTSEADMQKLSR-ALKILSETEKQLRMSKHQTTWLTVA 638
+ E + +R AL +L E +QL + Q W T A
Sbjct: 305 MERTL---IDEKFPEVANRFALPVLYEVIEQLNQALTQLKWSTFA 346
>gi|374337683|ref|YP_005094388.1| DNA polymerase III subunits gamma and tau [Streptococcus
macedonicus ACA-DC 198]
gi|372283788|emb|CCF01995.1| DNA polymerase III subunits gamma and tau [Streptococcus
macedonicus ACA-DC 198]
Length = 559
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 165/290 (56%), Gaps = 2/290 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ V+ +L A+S G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK I
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLVAIR 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
L I +E I++++ AL IA + G +RDA +LDQ LSL ++L++A E+ G
Sbjct: 184 EHLANILDKEEISYEEDALTLIARCAEGGMRDALSILDQALSLTPDNHVSLAIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+S L D + L++ TS + + S + + L N + D+L
Sbjct: 244 ISMTALDDFVANVLANQTSQALANLETIFDSGKSMSRFATDLLNYLRDLL 293
>gi|315644459|ref|ZP_07897592.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex
V453]
gi|315280209|gb|EFU43502.1| DNA polymerase III, subunits gamma and tau [Paenibacillus vortex
V453]
Length = 573
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 181/359 (50%), Gaps = 14/359 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F ++VGQ ++++L +AI V+ YLF GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRAWRPQSFGDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKILAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++PC C C +SG DV+E+D+ + + L + P R K++I
Sbjct: 65 EHGPAEEPCNECEACRRITSGAVMDVQEIDAASNRGVEEIRDLREKVKYAPTEVRRKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE HV+F++ T E +LP + +SR Q++ F ++ +
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHRLPATIISRCQRFDFRRVSLDEQT 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIV 534
RL++IC EE I D AL +IA S+G +RDA +LDQ+ S G ++ ++ G +
Sbjct: 185 GRLQQICGEEGITADHEALQYIARLSDGGMRDALSILDQIASFTGGTVSYQQVMDMTGGI 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ ++ L D + + M+ + + L D+L K + D +
Sbjct: 245 ASEQFGRLASAVKQGDAGLVLQIVEQFMQEGKSADKCMENLLYYFRDLLMIKMVPDADKL 304
Query: 595 RKNFFGKHTSEADMQKLSRA---------LKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ A+ Q+++ A + LS + +++ + T VALL+LS
Sbjct: 305 TDRVL----NPAEFQEMANAFSRDELFQMIDTLSRYQSEMKYASQPQTLFEVALLKLSG 359
>gi|15674176|ref|NP_268351.1| DNA polymerase III subunits gamma and tau [Lactococcus lactis
subsp. lactis Il1403]
gi|12725258|gb|AAK06292.1|AE006448_10 DNA polymerase III, subunits beta and tau [Lactococcus lactis
subsp. lactis Il1403]
Length = 552
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 144/246 (58%), Gaps = 1/246 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRKYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N D + + + + +K++I
Sbjct: 65 PNQVDGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIREIRDKSTYAASQATYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVFV+ T EL K+P + +SR Q++ F I GDI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSITTGDIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ L +I +E + FD ALD IA + G +RDA LLDQ LS K+ + A + G +
Sbjct: 185 TYLAKIMADEGLEFDGKALDVIAKAAEGGMRDALSLLDQALSFSSGKLEENDALLVTGSI 244
Query: 535 SDDELL 540
+ D L+
Sbjct: 245 AADALV 250
>gi|385831760|ref|YP_005869573.1| DNA polymerase III subunit gamma/tau [Lactococcus lactis subsp.
lactis CV56]
gi|418038795|ref|ZP_12677111.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|326407768|gb|ADZ64839.1| DNA polymerase III subunit gamma/tau [Lactococcus lactis subsp.
lactis CV56]
gi|354692802|gb|EHE92607.1| DNA-directed DNA polymerase [Lactococcus lactis subsp. cremoris
CNCM I-1631]
Length = 552
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 144/246 (58%), Gaps = 1/246 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRKYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N D + + + + +K++I
Sbjct: 65 PNQVDGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIREIRDKSTYAASQATYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVFV+ T EL K+P + +SR Q++ F I GDI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSITTGDIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ L +I +E + FD ALD IA + G +RDA LLDQ LS K+ + A + G +
Sbjct: 185 TYLAKIMADEGLEFDGKALDVIAKAAEGGMRDALSLLDQALSFSSGKLEENDALLVTGSI 244
Query: 535 SDDELL 540
+ D L+
Sbjct: 245 AADALV 250
>gi|402828799|ref|ZP_10877684.1| DNA polymerase III, subunit gamma and tau [Slackia sp. CM382]
gi|402285957|gb|EJU34437.1| DNA polymerase III, subunit gamma and tau [Slackia sp. CM382]
Length = 862
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 185/366 (50%), Gaps = 14/366 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP FD++VGQ + R++ +A+ V+ YLF GPRGTGKT+ +R+ A AL C
Sbjct: 4 ALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALLC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDS-----VRINRSDRVGSLMKSAFLPPFSSR 410
P G C +C + G DV E+D+ V R + +G + P R
Sbjct: 64 EKGPTPAPDGECEQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQ----FAPVRGR 119
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
+KI+IIDE +L + +L +LE HVVF++ T + K+P + SR Q++ F ++
Sbjct: 120 YKIYIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFDFHRLA 179
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYE 529
+ +I +RL +C E + F+ AL+ A ++ G +RDA L+QL G+ ++T+ +A +
Sbjct: 180 NEEIIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGEGRVTMQVALD 239
Query: 530 LIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD----ILAG 585
++G + +++ D++ D + E + + D Q LA+ + D IL
Sbjct: 240 VLGALDSNDMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDLASYVRDLYAFILTD 299
Query: 586 KCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
LE S A +L+ L IL + +LR S + +AL +++
Sbjct: 300 GALEPRSSATNEQLAAQAGLFGPDRLAHVLSILGDVCAELRSSANPRLSFEIALTRMARP 359
Query: 646 ESSLDL 651
ES L L
Sbjct: 360 ESDLTL 365
>gi|333382965|ref|ZP_08474630.1| hypothetical protein HMPREF9455_02796 [Dysgonomonas gadei ATCC
BAA-286]
gi|332828295|gb|EGK01007.1| hypothetical protein HMPREF9455_02796 [Dysgonomonas gadei ATCC
BAA-286]
Length = 582
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 195/363 (53%), Gaps = 10/363 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NCLS
Sbjct: 8 ARKYRPMTFNSVVGQRALTTTLKNAIASGKLAHAYLFCGPRGVGKTTCARIFAKTINCLS 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + SL++ +PP ++K++II
Sbjct: 68 PAADGEACNQCESCVAFNEQRSFNIHELDAASNNSVDDIRSLIEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE H +F++ T E K+ + LSR Q Y F +I D
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFSRITIKDTVE 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E + + AL+ +A K++G +RDA + DQ +S G +T E + ++
Sbjct: 188 HLQYVASQENVQTEPEALNVLAQKADGGMRDALSIFDQVVSFTGGNVTYKAVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L D L+++ + ++ E++ D +I+ +A+ D+L K L +
Sbjct: 248 YEYYFRLTDCILANNVVDGLLILNEILSKGFDGNNVITGIASHFRDLLLCKDPKTAELFE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQ---TTWLTVALLQLSSSES 647
+ ++ + + + + + L +A+ I++E++ R+S+++ + + L QLSS ++
Sbjct: 308 VGASIRDRYIETARKCNNEFLYKAIDIVNESDLNYRLSRNKRLLSDLTVIRLCQLSSPQT 367
Query: 648 SLD 650
L+
Sbjct: 368 GLE 370
>gi|312875754|ref|ZP_07735749.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2053A-b]
gi|311088746|gb|EFQ47195.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2053A-b]
Length = 583
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 65 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 185 NRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITGYA 244
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 245 DQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 303
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 304 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 356
>gi|386348003|ref|YP_006046252.1| DNA polymerase III subunits gamma and tau [Spirochaeta thermophila
DSM 6578]
gi|339412970|gb|AEJ62535.1| DNA polymerase III, subunits gamma and tau [Spirochaeta thermophila
DSM 6578]
Length = 510
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 173/335 (51%), Gaps = 5/335 (1%)
Query: 302 RPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQ 361
RP F +L GQ VV +L +A+ G V YLF GPRG GKTSA+RI A ALNC
Sbjct: 11 RPQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTSAARILAKALNCEQGVTP 70
Query: 362 KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQL 421
+PCG C C S G + DV E+D + V + + P +R+K++IIDE +
Sbjct: 71 EPCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVIREEVLFAPGKARYKVYIIDEVHM 130
Query: 422 LHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRI 481
L + +L ++E +VVF+ T EL ++P + SR Q+YHF I IAS LR
Sbjct: 131 LSNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQQYHFRLISPEVIASLLREA 190
Query: 482 CVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDELL 540
E + ++ AL +IA +++GS+RDA L DQ +S +++ +L E +G+V + L
Sbjct: 191 ASEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSEGRLSYALIQEKLGLVGFERLQ 250
Query: 541 DLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL---IMDILAGKCLEDCSEARKN 597
+++ + + + E++ S + Q + LA + + AG E +
Sbjct: 251 AVVEACVREEVKGALDLVHEILMSGVSVEQCVVDLAEYFRALTLVEAGIERESILGVAPS 310
Query: 598 FFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQ 631
F K A +L RA++++ ET + +R S +Q
Sbjct: 311 RFSKSVRTAFSPAQLERAMELILETYRNIRYSLNQ 345
>gi|419782276|ref|ZP_14308085.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK610]
gi|383183380|gb|EIC75917.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK610]
Length = 552
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 163/290 (56%), Gaps = 2/290 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV ++L A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N D + + + P +R+K++I
Sbjct: 64 PNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +Q+VVF++ T EL K+P + LSR Q++ F I+ DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQDIT 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
+ + I +E I+ + A++ IA ++ G +RDA +LDQ LSL G ++T +++ E+ G
Sbjct: 184 AHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEITGT 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+S L D + D S + L + + ++ L + D+L
Sbjct: 244 ISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLL 293
>gi|339641467|ref|ZP_08662911.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339454736|gb|EGP67351.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 556
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ +G ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQGKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYATSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTEIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD+ +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDIYVAALIAHDAVTA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKL 611
D + H SE ++ L
Sbjct: 291 DLIIVKTGGENHHASELFLENL 312
>gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
Length = 548
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 194/357 (54%), Gaps = 8/357 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F EL+GQN + +++ +A+ + Y+F GPRGTGKT+ +++ A +LNC
Sbjct: 4 ALYRKYRPTNFSELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLNC 63
Query: 356 LSLEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
SL ++ +PC C +C DV E+D+ N +++ + + P + ++K++
Sbjct: 64 ESLNNEGEPCNECSQCKAIRGNSHADVLEIDAASNNGVEQIREIREQVAYAPGTGKYKVY 123
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE +HV+F++ T ++ K+P + +SR Q++ F +I DI
Sbjct: 124 IIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGPRDI 183
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG--KKITLSLAYELIG 532
RLR + ++E + ++ AL + + G +RDA L+DQ + IT E++G
Sbjct: 184 IERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFATNETITKDDVSEVVG 243
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE--- 589
+S +++ + L +T + +++ + +P+ L+ L + D++ K E
Sbjct: 244 RISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLVISKAFEVKE 303
Query: 590 -DCSEARKNF-FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
+ + A N F + E ++ K+ ++ L+E + +++ S + L V L+QL++
Sbjct: 304 DNITTAILNSKFYELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLEVGLIQLAT 360
>gi|251781218|ref|ZP_04824134.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243081665|gb|EES47726.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 544
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 192/358 (53%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I + YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPKTFNDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+L++ +PC C C + G S DV E+D+ N DR+ ++ PP ++KI+I
Sbjct: 65 FNLQNGEPCNECEMCKKINEGLSMDVTELDAASNNGIDRIRDIIDDTKYPPQEGKYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L G L +LE +V+F++ T + KLP + LSR Q++ F +I DI+
Sbjct: 125 LDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRINQKDIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR+I + +N D +LD IA ++G++RD+ +LDQ +G I ++G+V
Sbjct: 185 DRLRKITEAQNVNVDDKSLDLIARVADGAMRDSLSILDQAIAMGDNNIKYDDLISILGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKID----PMQLISQLANLIMDILAGKCLE- 589
+++ L D+ + + + ++ +L+ S D LI NL+M ++ E
Sbjct: 245 TNEYLFDITNSIVDRNIEKAMVIIDKLVFSGKDIHLFIKDLIGHFRNLLMVKVSNTPEEI 304
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + ++++ R ++IL E E ++SK +L ++++++ E
Sbjct: 305 LDMSLENIELIKEQGKKIRIEEIMRGIRILQEGEANSKVSKQSRLYLELSIIKMCKIE 362
>gi|125974631|ref|YP_001038541.1| DNA polymerase III subunits gamma and tau [Clostridium thermocellum
ATCC 27405]
gi|125714856|gb|ABN53348.1| DNA polymerase III, subunits gamma and tau [Clostridium
thermocellum ATCC 27405]
Length = 547
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 193/371 (52%), Gaps = 9/371 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F+++V Q VVR+L ++I G + YLF G RGTGKT+ ++IF+ A+NC
Sbjct: 5 ALYRKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D PC C C +G DV E+D+ N D + L P +R+K++I
Sbjct: 65 LNPKDGDPCNQCEICQGILNGSLLDVIEIDAASNNSVDDIRVLRDEVIYTPSKARYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E KLP + LSR Q++ F +I I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATILSRCQRFDFRRIPVDSIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I E + + A IA S+G++RDA +LDQ +SL K++T ++G+V
Sbjct: 185 KRIEYIAKESGVEIRREASKLIAKLSDGALRDAISILDQCISLGSKELTYEDVLSVVGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL---EDC 591
+D + +++D + + + EL+ + Q +S+L +++ L ED
Sbjct: 245 TDTFIAEVVDAIKNKEVGRVLNAVDELVMEGKNIGQFVSELVMYYRNLMICSSLSNPEDI 304
Query: 592 SEARKNFFGKHTSEA---DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+A + + + ++ ++ +K LS E L+ S H L L++L E+
Sbjct: 305 IDASADSIQRMKEQCKGLELFEIVTVIKELSSLEAALKWSTHPRVLLETTLIKL--CENR 362
Query: 649 LDLNDSKLCLR 659
LD D+ + R
Sbjct: 363 LDPGDAGVLER 373
>gi|342215999|ref|ZP_08708646.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral
taxon 375 str. F0436]
gi|341586889|gb|EGS30289.1| DNA polymerase III, subunit gamma and tau [Peptoniphilus sp. oral
taxon 375 str. F0436]
Length = 547
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/355 (32%), Positives = 184/355 (51%), Gaps = 26/355 (7%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDEL+GQ V L + I +G + YLF G RGTGKTSA++IF+ A+NC
Sbjct: 4 ALYRKYRSKTFDELLGQKQVTIPLKNQIIQGQTSHAYLFSGSRGTGKTSAAKIFSRAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L D PC C C L R DV E+D+ N D + L + PP R+K++I
Sbjct: 64 LHPIDGNPCNECENCKLILEDRMMDVVEMDAASNNGVDDIRELKERVVYPPGIGRYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L LE +H++F++ T EL+K+P + SR Q++ F ++ +
Sbjct: 124 IDEVHMLSKGAFNALLKILEEPPKHLIFILATTELEKIPATIRSRCQRFQFRRLDQDTLI 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535
+ I +E + DQ AL IA S G++RDA LL+Q L K +TL+ + +G+V
Sbjct: 184 QGMEGILEKEGKSADQEALALIARHSQGAMRDALSLLEQCLYLDKHLTLAQVQDSLGLVE 243
Query: 536 DDELLDLLDLALSSDTSNTVIR--------ARELMRSKIDPMQLISQLANLIMDILAGKC 587
DD L+D + L D + + + R+L R +D L+ Q+ +L++ + +G
Sbjct: 244 DD-LIDQVLRDLVKDRTFSFVSVLNQAYKDGRDLERLLMD---LLYQMKDLVVQVQSG-- 297
Query: 588 LEDCSEARKNFFGKHTSEADMQKLS--RALKILSETEKQLRMSKHQTTWLTVALL 640
+ K++ D Q S +A+ L ET + LR SK + + +
Sbjct: 298 ----LKPDKDYL------EDFQLASWLQAMHALEETVQTLRYSKDPLLAVEIGFM 342
>gi|335045832|ref|ZP_08538855.1| DNA polymerase III, subunit gamma and tau [Oribacterium sp. oral
taxon 108 str. F0425]
gi|333759618|gb|EGL37175.1| DNA polymerase III, subunit gamma and tau [Oribacterium sp. oral
taxon 108 str. F0425]
Length = 526
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 187/362 (51%), Gaps = 12/362 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FD++VGQ+ + RS + + G V YLF G RGTGKTS ++I A A+NC
Sbjct: 5 ALYRKWRSKDFDDIVGQDAITRSFKNQVKSGKVGHAYLFCGTRGTGKTSLAKILARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D PC C+ C S S +V E+D+ D V + + PP R+K++I
Sbjct: 65 ENPIDGNPCNQCKNCRAILSNTSINVYEMDAASNRNIDDVRLIREQIEYPPVDMRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE + + L +LE ++V+F++ T E + LP + LSR Q+Y F +I I
Sbjct: 125 IDEVHMFTEQANNAFLKTLEEPPEYVIFILATTEPNALPITILSRCQRYDFKRIAVETIK 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
RL IC EE I + AL++IA +GS+RD+ LLDQ + ++I+ A +++G
Sbjct: 185 QRLAMICKEEGIRIAEDALEYIARMGDGSMRDSVSLLDQCASYDFQEEISYEDALKVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIR--ARELMRSKIDPMQLISQLANLIMDILAGKCLE-- 589
V D + L AL + V+ A L + K + Q S L +++ K ++
Sbjct: 245 V-DTTVFSALVRALRAKNMQAVMENIATVLEQGK-ELTQYCSDLLQYFRNMMLAKSVQNL 302
Query: 590 ----DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
D SE K + E M+++ R +++LSE +Q R + + L L++L+
Sbjct: 303 QGLVDLSEENKLLLLEDAKEMPMEEILRGIRLLSELLQQFRYANQKRVLLETCLMKLAFP 362
Query: 646 ES 647
E+
Sbjct: 363 ET 364
>gi|329920997|ref|ZP_08277525.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
1401G]
gi|328935273|gb|EGG31753.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
1401G]
Length = 583
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 65 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 185 ARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGYA 244
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 245 DQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 303
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 304 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 356
>gi|223983491|ref|ZP_03633677.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM
12042]
gi|223964663|gb|EEF68989.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM
12042]
Length = 613
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 186/358 (51%), Gaps = 15/358 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP+ F+E+VGQ +V +L +A+ + + YLF GPRGTGKT+ +++ A A+NC
Sbjct: 5 ALYRTYRPSSFEEVVGQQHIVTTLKNAVKQNKIAHAYLFCGPRGTGKTTIAKLLAKAVNC 64
Query: 356 LSLEDQK--PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
EDQ+ PC CR C G D+ E+D+ N D V L++ P R+K+
Sbjct: 65 ---EDQQNAPCNQCRSCLAIQQGNHPDIVEIDAASNNGVDEVRELIEKVKYAPLEGRYKV 121
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
+IIDE ++ + +L +LE HV+F++ T E K+ + +SR Q+Y F K+ +
Sbjct: 122 YIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRCQRYDFSKVGQNE 181
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIG 532
I +R+R + +E I + AL +A ++G +RDA ++DQ ++ IT + E+ G
Sbjct: 182 IITRVRCVLEQEHIECEDEALRLVAQLADGGMRDALSIMDQCIAYAQNHITAAHVNEIYG 241
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS 592
I + E +++L + + + R L +D +L S L ++ + + +D +
Sbjct: 242 ITTVSEKIEMLQWIFQHQAQSLLEKIRLLNEKGVDIKRLTSDLIEILKECVIFIYTQDVT 301
Query: 593 ------EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
E N S D+ L + IL ET ++ R + ++ VA+L++ +
Sbjct: 302 LLNKINETEANAIINGKSSRDLLAL---IDILMETLEKYRTASSAASYFEVAVLKMMA 356
>gi|312870907|ref|ZP_07731012.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
3008A-a]
gi|311093597|gb|EFQ51936.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
3008A-a]
Length = 583
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 65 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 185 ARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGYA 244
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 245 DQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 303
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 304 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 356
>gi|222153344|ref|YP_002562521.1| DNA polymerase III subunits gamma and tau [Streptococcus uberis
0140J]
gi|222114157|emb|CAR42660.1| DNA polymerase III subunit gamma/tau [Streptococcus uberis 0140J]
Length = 555
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 175/332 (52%), Gaps = 4/332 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F E+VGQ+V+ +L A+ G ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 4 ALYRKYRSQSFSEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C ++G DV E+D+ N D + + + P + +K++I
Sbjct: 64 PHQVNGEPCNQCDLCQDITNGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DIA
Sbjct: 124 IDEVHMLSSGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKQTDIA 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
L I +E +++ AL IA ++ G +RDA +LDQ LSL K ++ LS A E+ G
Sbjct: 184 DHLASILEKEGLSYQAEALSLIARRAEGGMRDALSILDQALSLSSKNQVDLSTAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S L + + + + + + + + L D+L K D S
Sbjct: 244 ISIKALDEYVTYIYEGNAQEALACLNTIFENGKSMSRFATDLLTYFRDLLIAKSGGDQSF 303
Query: 594 ARKNFFG--KHTSEADMQKLSRALKILSETEK 623
+ FF K ++ +S K +SE +K
Sbjct: 304 QSEQFFNHLKIATDQIFDWISLVTKYISEIKK 335
>gi|422882123|ref|ZP_16928579.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK355]
gi|332361887|gb|EGJ39690.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
SK355]
Length = 556
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 193/366 (52%), Gaps = 31/366 (8%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQQVVATTLRQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKDGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTQDII 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGK-KITLSLAYELIGI 533
+ I +E I+F+Q + IA ++ G +RDA +LDQ LSL + ++T +A E+ G
Sbjct: 184 GHIEWILEQEGIDFEQEGVQIIARRAEGGMRDALSILDQALSLTQENRLTTDIAEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI----SQLANLIMDILAGKCLE 589
+S L LD +++ ++ + A +D + LI +A + D+L + L
Sbjct: 244 IS----LGALDAYVAALIAHDAVAA-------LDNLNLIFDSGKNMARFVTDLL--QYLR 290
Query: 590 DCSEARKNFFGKHTSEADMQKLS-----------RALKILSETEKQLRMSKHQTTWLTVA 638
D + H SE ++ L A K L++ + L+ K T +T+
Sbjct: 291 DLIIVKTGGENHHASEIFLENLKTPQETLFAMIDMATKSLADIKNSLQ-PKIYTEMMTIR 349
Query: 639 LLQLSS 644
L ++SS
Sbjct: 350 LAEISS 355
>gi|317120921|ref|YP_004100924.1| DNA polymerase III subunits gamma and tau [Thermaerobacter
marianensis DSM 12885]
gi|315590901|gb|ADU50197.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter
marianensis DSM 12885]
Length = 825
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 178/356 (50%), Gaps = 13/356 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FD +VGQ V+R+L +A+ G V YLF GPRGTGKTS +++ A A+NC
Sbjct: 7 ALYRSWRPQRFDGVVGQEHVIRTLANALRTGRVAHAYLFAGPRGTGKTSVAKLLAKAVNC 66
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
LS E +PC C C + G + DV E+D+ D + L + P +R+K++I
Sbjct: 67 LSPEGVEPCNRCEVCREINDGSTMDVLEIDAASNRGIDEIRELRERVRYAPARARYKVYI 126
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE H +F++ T E +LP + +SR Q++ F ++ I
Sbjct: 127 IDEVHMLTTEAFNALLKTLEEPPAHALFILATTEPHRLPATIVSRCQRFDFHRLTPEQIL 186
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL+ +C + + AAL +A + G +RDA LLDQ L++ G ++ + +L+G+
Sbjct: 187 ERLQAVCTAMGVEAEPAALRLLARLAEGGLRDALSLLDQSLAMAGDRLDAQVVADLLGLA 246
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
+ +L L + D + EL +D Q + D+LA L +
Sbjct: 247 PGEGILALTRAVVEGDVGAGLQAVAELSAQGVDLAQALRDWVACWRDLLA---LRAGLDE 303
Query: 595 RKNFFGKHTSEADMQKLSRAL---------KILSETEKQLRMSKHQTTWLTVALLQ 641
R + D+ L+RAL L+E E LR S L AL++
Sbjct: 304 RHLLYAGPELAGDLAPLARALDDETALACFDALAEGESLLRWSGQPRLALEAALIR 359
>gi|255284258|ref|ZP_05348813.1| DNA polymerase III, gamma and tau subunit [Bryantella formatexigens
DSM 14469]
gi|255265211|gb|EET58416.1| DNA polymerase III, subunit gamma and tau [Marvinbryantia
formatexigens DSM 14469]
Length = 541
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 146/546 (26%), Positives = 248/546 (45%), Gaps = 30/546 (5%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +KFRP+ F ++ GQ+ VV++L + I G V YLF G RGTGKT+ ++I A A+NC
Sbjct: 5 ALYRKFRPDTFADVKGQDAVVQTLKNQIKSGRVGHAYLFCGTRGTGKTTIAKIMAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D PC C C ++G S +V E+D+ N D + + + P R+K++I
Sbjct: 65 EHPVDGSPCNECATCRAIAAGSSLNVIEIDAASNNGVDNIREIREEVSYSPTEGRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E +KLP + LSR Q+Y F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEANKLPVTILSRCQRYDFKRIPVATIE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGI 533
RL+ + E + + A+ +IA K++G++RDA LLDQ G+K+T +++G
Sbjct: 185 ERLQELLAAEKLEAEDKAVRYIARKADGALRDALSLLDQCIAFFPGQKLTYEQTLDVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LED 590
V + +L L D + EL+ + Q ++ + ++L K +E+
Sbjct: 245 VDTEVFSRILRKVLKQDVRGLMEELEELVMQGRELGQFVTDFTWYLRNLLLLKSSDDMEE 304
Query: 591 CSEARKNFFGKHTSEADMQK---LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647
+ EA M + L R ++I SE ++R + L VAL++L +
Sbjct: 305 VLDVSAENLKLLQEEAGMVREDTLMRYIRIFSELSNRMRYESSKRIVLEVALIKLCRPQM 364
Query: 648 SLDLNDSKLCLR-----------YAHDKDGDSHCTIS-PRDSFKHLVRGSCVGDKANKLG 695
D +R GD+ IS P + S + ++ +
Sbjct: 365 ETDYTSILERVRNLERQLAEGVVITQQAGGDAGGHISAPAKA------DSPLPEEMPQKA 418
Query: 696 ALEDYKGTLESIWKT-ATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSR 754
A ED + + S+WK+ A E + + + + L V +F Y+
Sbjct: 419 APEDVQRVV-SMWKSIAGEAGGRFGMVLQTKAEPRYDPSEDKSCLYVVFQDFQGEKYIHD 477
Query: 755 AEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFSLFSCSRWVQQSRSTTERETDS 814
AEK L+ + ++S +G +EI+++ A K S +++ E E D
Sbjct: 478 AEKK-TLLENIIESKIGKKMEIKMVLAD-DMKNGSQKLYAVSVDEKLREKIHNIEIEVDD 535
Query: 815 DYSDYF 820
D F
Sbjct: 536 SPVDVF 541
>gi|288799735|ref|ZP_06405194.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp.
oral taxon 299 str. F0039]
gi|288332983|gb|EFC71462.1| DNA polymerase III, gamma and tau subunit protein [Prevotella sp.
oral taxon 299 str. F0039]
Length = 591
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 186/353 (52%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP FD +VGQ + +L +AI + YLF GPRG GKT+ +RIFA +NC +
Sbjct: 8 ARKYRPASFDTVVGQKALTETLKNAIKANKLAHAYLFCGPRGVGKTTCARIFAKTINCFT 67
Query: 358 LEDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
Q + C C CA F+ RS ++ E+D+ N + + +LM+ +PP ++K+FII
Sbjct: 68 PTAQGEACNHCESCAAFNEQRSFNIFELDAASNNSVENIKALMEQTRIPPQVGKYKVFII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE HV+F++ T E K+ + LSR Q Y F ++ DI +
Sbjct: 128 DEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVQDIVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L + +E I ++ AL IA K++G +RDA + DQ + + IT + E + ++
Sbjct: 188 HLESVAKQEGITYESEALTIIAEKADGGMRDALSIFDQTASFAQGNITYAKVLEDLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ ++D +L + S ++ ++ D + LA I ++L K L +
Sbjct: 248 VENYFKMIDFSLENKVSELMLLLNSIVSRGFDYGNISVGLAAHIRNVLMSKDEKTVSLIE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
S++ + + + ++ L +ALK+L++ + + S ++ + + L+Q++
Sbjct: 308 TSDSLRQRYKEQAAKCPTSFLYKALKLLNQCDINYKQSSNKALLVELTLIQVA 360
>gi|116333249|ref|YP_794776.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC
367]
gi|116098596|gb|ABJ63745.1| DNA polymerase III, gamma/tau subunit [Lactobacillus brevis ATCC
367]
Length = 576
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 188/357 (52%), Gaps = 12/357 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F +++GQ VV R+L +AI+ ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQQFKDMIGQEVVTRTLKNAITTKQISHAYLFAGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
D +PC C C ++G DV E+D+ N + + + P + +K++I
Sbjct: 65 HHQTDGEPCNECDTCQAITNGTLNDVIEIDAASNNGVEEIRDIRDKVKYAPTVADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V+F++ T E K+P + +SR+Q++ F +I D
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQRFDFKRIAASDSY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
SR+ I ++ + +D+ AL IA + G +RDA +LDQ LS +ITL A + G V
Sbjct: 185 SRMTYILDQKGVTYDEQALKVIAKAAEGGMRDALSILDQALSFGDNEITLDNALLVTGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----AGKCLED 590
+ + L + ++ DT + + ++ + D + + D+L A + +E+
Sbjct: 245 THELLATYMQQVVAGDTKAALATLQSVLEAGKDAERFSEDVIGYARDLLLYQQAPQMVEE 304
Query: 591 C--SEARKNF--FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++F + T + M + + L+ ++Q+R + H +L + ++L+
Sbjct: 305 AEMGSVSEDFQTLAQQTPASAMYAM---INELNAIQQQMRYTTHPDVYLEILTIKLA 358
>gi|429737415|ref|ZP_19271279.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429152721|gb|EKX95534.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 612
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 160/290 (55%), Gaps = 3/290 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ + R+L A++ G + YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRRWRPETFADLVGQEHISRTLARAVTSGQTSHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PCG C C S G S DV E+D+ D + L +S P +KI+I
Sbjct: 65 AEGPTLTPCGACDSCRAISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGHYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE V+F++ T E K+P + SR Q+Y F +I +I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPPRVIFILATTEPHKVPATIQSRCQRYDFHRITVTEIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL R+C E I D+ AL IA +++G +RDA +LDQ + L + +T E +G+V
Sbjct: 185 DRLIRVCHESGIAADEDALAIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEALGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVI-RARELMRSKIDPMQLISQLANLIMDIL 583
++ + L +S T+ +I + EL+ + + Q++++LA ++
Sbjct: 245 G-RAWIEKMALQISGRTAAPLITQLGELLHNGRELRQILAELAQYFRSLM 293
>gi|409097430|ref|ZP_11217454.1| DNA polymerase III subunits gamma and tau [Pedobacter agri PB92]
Length = 391
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 188/366 (51%), Gaps = 7/366 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ + +L +AI + +LF GPRG GKT+ +RI A +NC +
Sbjct: 8 ARKYRPATFETVVGQQHITGTLKNAIKNNQLAQAFLFCGPRGVGKTTCARILAKTINCTN 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + CG C C F +G S +V E+D+ N D + SL++ +PP + ++KI+II
Sbjct: 68 PTPEMEACGQCDNCLSFQNGHSFNVHELDAASNNSVDDIRSLIEQVRIPPQAGKYKIYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE + +F++ T E K+ + LSR Q + F +I+ DIA+
Sbjct: 128 DEVHMLSQSAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVEDIAN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLAYELIGIVS 535
L +I E I F+ L IA K++G +RDA + DQ+ S K IT + + I+
Sbjct: 188 HLTKIAQRENIAFESDGLHIIAQKADGGLRDALSMFDQIASYANKNITYKAVIDNLNILD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D L +++ S T++ E++ + D I+ LA ++L GK L +
Sbjct: 248 YDYFFKLTSFLTAAEVSQTLLLFDEILNNGFDGNNFINGLATHFRNLLVGKDAATIKLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLD 650
SE K + + ++ L AL + + + + SK+Q + +AL+++ S +
Sbjct: 308 VSENIKQKYLDQCRQTELSFLLTALNLANTCDLNYKNSKNQRLQVELALIKMCHIRSVVH 367
Query: 651 LNDSKL 656
L L
Sbjct: 368 LAQQPL 373
>gi|187251871|ref|YP_001876353.1| DNA polymerase III subunits gamma and tau [Elusimicrobium minutum
Pei191]
gi|186972031|gb|ACC99016.1| DNA polymerase III, subunits gamma and tau [Elusimicrobium minutum
Pei191]
Length = 627
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 183/336 (54%), Gaps = 11/336 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SLS K+RP F+++VGQ + ++L +AI G V YLF+GPRG GKT+++RIFA ALNC
Sbjct: 13 SLSNKYRPQTFEDVVGQETISKTLTNAIKLGRVGHAYLFYGPRGCGKTTSARIFAKALNC 72
Query: 356 LSLEDQK---PCGLCRECALFSSGRSRDVKEVDSVRINRSDRV-GSLMKSAFLPPFSSRF 411
++ PCG C +C ++G DV E+D+ + D++ +++ + L RF
Sbjct: 73 TGNGNKPAASPCGKCPQCIEIANGSDMDVLELDAASNTQVDKIREAIIDTVALAATRDRF 132
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
KIFI+DE +L ++ +L ++E HVVF++ T E K+P + SR Q + F I
Sbjct: 133 KIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKHKVPATISSRCQTFRFRPITQ 192
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYEL 530
DI++ L + +E IN + A+ IA+++ G++RDA +LD+ ++ IT L ++
Sbjct: 193 EDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALTILDRAIAYSDGSITEELVIDM 252
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL---AGKC 587
+G++ +D L + L + + + DP+ + L N + D+ G
Sbjct: 253 LGLMPEDILKAAVKAVLKKNYNEMHTVFETIQMEGFDPLSFLRDLKNALGDLFYLSIGHG 312
Query: 588 LEDCSEARKNFFGKHTSEADMQKLSRAL-KILSETE 622
E S A + K TS + + L+R + K++ ET+
Sbjct: 313 HEPFSGAAE--LAKKTSPSYIAGLTRKINKVIDETK 346
>gi|147676386|ref|YP_001210601.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
thermopropionicum SI]
gi|146272483|dbj|BAF58232.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
thermopropionicum SI]
Length = 558
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/367 (29%), Positives = 185/367 (50%), Gaps = 17/367 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E++GQ + R+L +A+ G V Y+F G RGTGKT+A+++ A ALNC
Sbjct: 5 ALYREWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
E +PC C C + G S DV E+D+ D + L + P + R++++I
Sbjct: 65 TGREGAEPCNRCESCRAVNEGISVDVIEIDAASNRGIDEIRDLREKIRFAPAAGRYRVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +H V ++ T E ++P + LSR Q++ F +I DI
Sbjct: 125 IDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFDFRRIIPADII 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL+ + + ++ AL IA + G +RDA +LDQ + G K+T + ++++G V
Sbjct: 185 KRLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAFGGMKVTEAGVHQILGTV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIR-ARELMRSKIDPMQLISQLANLIMDIL---------A 584
D LD + L++ + +R EL D +LA + +L A
Sbjct: 245 RTDA-LDRMAGCLAAGEAGRALRLVSELAGEGKDLRLFARELAGYLRALLLEKISPGTPA 303
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644
G+ D + +E L RA++I++ E+ ++ S L +AL++
Sbjct: 304 GEAWGDTAR-----MAAQAAEFSEAGLVRAVEIIARAEQDMKWSAMPGIVLELALVKACR 358
Query: 645 SESSLDL 651
E+ DL
Sbjct: 359 PEAGWDL 365
>gi|254478363|ref|ZP_05091742.1| DNA polymerase III, subunits gamma and tau, putative
[Carboxydibrachium pacificum DSM 12653]
gi|214035721|gb|EEB76416.1| DNA polymerase III, subunits gamma and tau, putative
[Carboxydibrachium pacificum DSM 12653]
Length = 495
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 184/344 (53%), Gaps = 9/344 (2%)
Query: 316 VRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375
+R+L + I G + YLF G RGTGKTS ++IFA A+NCL+ +D +PC C C ++
Sbjct: 1 MRTLRNQIKMGRIGHAYLFTGTRGTGKTSVAKIFAKAVNCLNPKDGEPCNSCEVCQAINT 60
Query: 376 GRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLE 435
G + DV E+D+ N + V L +S P +++K++IIDE +L + +L +LE
Sbjct: 61 GTTMDVLEIDAASNNSVNDVRELRESVIYSPSLTKYKVYIIDEVHMLSTGAFNALLKTLE 120
Query: 436 NISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALD 495
+HV+F++ T E +KLP + LSR Q++ F KI IA L RIC + I ++ +
Sbjct: 121 EPPRHVIFILATTEPEKLPDTILSRCQRFDFKKIPTKQIAQNLERICRDSGIQIEENGIK 180
Query: 496 FIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNT 554
IA NGS+RDA LL+Q S IT E++G+ +++ L LLD D +
Sbjct: 181 AIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEILGVANEEMLFSLLDHIYEKDAVAS 240
Query: 555 VIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFG-KHTSEADMQK--- 610
+ + +++ ID + ++ D++ K D E + +G + T +A QK
Sbjct: 241 LQQLDKILSYGIDLGNFLRSFTYMLRDMVIYKTGGD--ELIEILYGDQETIKAKSQKYSI 298
Query: 611 --LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLN 652
L+ AL+ + ++++R + T L + +L+L E S D+
Sbjct: 299 GFLTNALEKFTALQREIRYAVSPVTLLELTILRLIRPEISYDMG 342
>gi|15612597|ref|NP_240900.1| DNA polymerase III subunits gamma and tau [Bacillus halodurans
C-125]
gi|10172646|dbj|BAB03753.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans
C-125]
Length = 564
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 184/353 (52%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP ++VGQ + ++L +A+ + + YLF GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRVWRPQKLQDVVGQEHITKTLQNALVQEKFSHAYLFSGPRGTGKTSAAKIIAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC CR C +SG DV E+D+ N D + + P R+K++I
Sbjct: 65 EQAPIAEPCNECRACKGITSGSIVDVMEIDAASNNGVDEIRDIRDHVKFAPSEVRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE H +F++ T E K+P + +SR Q++ F +I + +
Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPLTIISRCQRFDFKRISNDALV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I E I + AL +A + G +RD+ LLDQ +S +++T+ + G V
Sbjct: 185 GRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFADERVTVEDVLAITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S + L +++ A +T+ + +L+ + DP++ + L D++ K + S+
Sbjct: 245 SHEVLTQVVESAQKGETAEALQLVNQLLANGKDPLRFVEDLIYYYRDLMLFKAAPEASQL 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + F E + L A++IL++ ++++R S H L + ++ L
Sbjct: 305 LERAQINDSFKTLAGEINDASLFAAIEILNDCQQRMRWSSHPRVALELGVVTL 357
>gi|363896848|ref|ZP_09323397.1| hypothetical protein HMPREF9624_02141 [Oribacterium sp. ACB7]
gi|361960413|gb|EHL13662.1| hypothetical protein HMPREF9624_02141 [Oribacterium sp. ACB7]
Length = 526
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 187/362 (51%), Gaps = 12/362 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FD++VGQ+ + RS + + G V YLF G RGTGKTS ++I A A+NC
Sbjct: 5 ALYRKWRSKDFDDIVGQDAITRSFKNQVKSGKVGHAYLFCGTRGTGKTSLAKILARAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D PC C+ C S S +V E+D+ D V + + PP R+K++I
Sbjct: 65 ENPIDGNPCNQCKNCRAILSNTSINVYEMDAASNRNIDDVRLIREQIEYPPVDMRYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE + + L +LE ++V+F++ T E + LP + LSR Q+Y F +I I
Sbjct: 125 IDEVHMFTEQANNAFLKTLEEPPEYVIFILATTEPNALPITILSRCQRYDFKRIAVETIK 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIGI 533
RL IC EE I + AL++IA +GS+RD+ LLDQ + ++I+ A +++G
Sbjct: 185 QRLAMICKEEGIRIAEDALEYIARMGDGSMRDSVSLLDQCASYDFQEEISYEDALKVLGA 244
Query: 534 VSDDELLDLLDLALSSDTSNTVIR--ARELMRSKIDPMQLISQLANLIMDILAGKCLE-- 589
V D + L AL + V+ A L + K + Q S L +++ K ++
Sbjct: 245 V-DTTVFSALVRALRTKNMQAVMENIATVLEQGK-ELTQYCSDLLQYFRNMMLAKSVQNL 302
Query: 590 ----DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
D SE K + E M+++ R +++LSE +Q R + + L L++L+
Sbjct: 303 QGLVDLSEENKLLLLEDAKEMPMEEILRGIRLLSELLQQFRYANQKRVLLETCLMKLAFP 362
Query: 646 ES 647
E+
Sbjct: 363 ET 364
>gi|309806689|ref|ZP_07700685.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
LactinV 03V1-b]
gi|308166994|gb|EFO69177.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
LactinV 03V1-b]
Length = 587
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 9 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 68
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 69 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 128
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 129 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 188
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 189 ARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGYA 248
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 249 DQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 307
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 308 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 360
>gi|238926315|ref|ZP_04658075.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei
ATCC 43531]
gi|238885719|gb|EEQ49357.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei
ATCC 43531]
Length = 615
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 183/358 (51%), Gaps = 16/358 (4%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F +LVGQ + R+L A++ G ++ YLF GPRGTGKTS ++I A ALNC
Sbjct: 5 ALYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PCG C C S G S DV E+D+ D + L +S P +KI+I
Sbjct: 65 AEGPTLTPCGHCDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFAPTEGLYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE + V+F++ T E K+P + SR Q+Y F +I +I
Sbjct: 125 IDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITVTEIC 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RL +C E I ++ AL IA +++G +RDA +LDQ + L + +T E +G+V
Sbjct: 185 DRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEALGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL----------A 584
+ + + + D + + + +L+++ + Q++ +LA ++ A
Sbjct: 245 GRAWIRQMAEQIAARDAAALITQLSQLLQNGRELRQVLVELAQYFRSLMIAGVGGTISAA 304
Query: 585 GKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
C D + R + SE ++ + L+ L+ET + LR S L++L
Sbjct: 305 ELCAGDAEQLRAD--AAQFSEDEIMTI---LRRLNETMQDLRTSPQPRIAAETLLIEL 357
>gi|187776529|ref|ZP_02993002.1| hypothetical protein CLOSPO_00034 [Clostridium sporogenes ATCC
15579]
gi|187775188|gb|EDU38990.1| DNA polymerase III, subunit gamma and tau [Clostridium sporogenes
ATCC 15579]
Length = 544
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 193/358 (53%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F E+VGQ + +L + + + YLF G RGTGKTS ++I + A+NC
Sbjct: 8 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 67
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+ +D +PC C C +SG DV E+D+ + + + ++++ PP + K++I
Sbjct: 68 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKYPPQEGKNKVYI 127
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L E L +LE +V+F++ T + KLP + LSR Q++ F +I++ +I
Sbjct: 128 MDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEEIF 187
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
RLR I E+ I D +L+ IA S+G++RDA +LDQ+ G K+ +++G+V
Sbjct: 188 ERLRSIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLGLV 247
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC------L 588
+++ LL + + + D ++ +++ S D + + + +IL K +
Sbjct: 248 TNENLLIITNSIIEKDVEKSMRIIEDIVLSGKDINNFMKDMITHLRNILMVKVSKNPDEI 307
Query: 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + + ++++ R +KIL E E+Q + K +L +A+L++ E
Sbjct: 308 LDMSSENIDLVKEQAEKIRIEEIMRNIKILQEAEQQSKWVKQSRIYLELAVLKMCKIE 365
>gi|311070666|ref|YP_003975589.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus
1942]
gi|419822886|ref|ZP_14346452.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus C89]
gi|310871183|gb|ADP34658.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus
1942]
gi|388472973|gb|EIM09730.1| DNA polymerase III subunits gamma and tau [Bacillus atrophaeus C89]
Length = 564
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 187/356 (52%), Gaps = 6/356 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IF+ A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLKKKFSHAYLFSGPRGTGKTSAAKIFSKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
++PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVEEPCNNCAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITPQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+++I E + ++ ALD IA+ ++G +RDA LLDQ +S G ++T+ A + G V
Sbjct: 185 GRMKKIVEAEQLKVEEGALDIIASAADGGMRDALSLLDQAVSFSGDELTVDDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L S + EL++ D +LI + D+L K LE
Sbjct: 245 SQHYIGKLAQSLHEKQVSGALETLNELLQQGKDAAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
E K + F + + L + +L+++ ++++ + H + VA++++ S
Sbjct: 305 LEKVKVDDTFRALSEQIPAPALYEMIDVLNKSHQEMKWTNHPRIFFEVAVVKICQS 360
>gi|417886775|ref|ZP_12530919.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris
F0423]
gi|341593166|gb|EGS36023.1| DNA polymerase III, subunit gamma and tau [Lactobacillus oris
F0423]
Length = 601
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 192/357 (53%), Gaps = 14/357 (3%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP FDELVGQ VV ++L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVWRPQRFDELVGQQVVTQTLKNAIVTHQISHAYLFAGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L+D +PC C C + G+ DV E+D+ N + + + A P + +K++I
Sbjct: 65 HHLKDGEPCNECAICKAITHGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +VVF++ T E K+P + +SR Q + F +I D
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPANVVFILATTEPHKIPLTIISRVQCFDFRRISAQDAY 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R++ I ++ + +++ AL IA + G +RDA +LDQ LS ++ L A + G V
Sbjct: 185 ERMKYILDQKQVQYEEKALWVIANAAEGGMRDALSILDQVLSFSDNQVQLKDALTVTGSV 244
Query: 535 SDDELLDLLDLAL----SSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK---- 586
+ +LL+ + S+D NT+ ++++ + D + I L + I D+L +
Sbjct: 245 T-KQLLEKYFFEVTAHKSADALNTM---KDILNAGKDGQRFIEDLISFIRDVLLYQESPQ 300
Query: 587 -CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
+ + + F K ++ A L + + L+ ++++R + H +L V ++L
Sbjct: 301 LIMVESTGLTDEDFQKMSAAAPATVLYQMIDALNGIQEEMRFTTHPDVYLEVLTVKL 357
>gi|239618378|ref|YP_002941700.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
19.5.1]
gi|239507209|gb|ACR80696.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
19.5.1]
Length = 503
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 156/293 (53%), Gaps = 1/293 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L +K+RP F+E+VGQ+ V L AI + Y+F GPRGTGKT+ +RI A ALNCL
Sbjct: 8 LYRKYRPKKFEEIVGQDQVKIVLKKAIENQSIAHAYIFFGPRGTGKTTTARILAKALNCL 67
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
S D KPCG C C + DV E+D+ D + + +A P +K++I+
Sbjct: 68 S-HDDKPCGKCESCIAVDNNSHMDVIEIDAASYRGIDEIRKIRDAASYRPTMGHYKVYIV 126
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L E + +L +LE +H+VF++ T L+K+P + LSR Q + F + +G I
Sbjct: 127 DEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSRCQVFTFKPLSEGQIVE 186
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
L+RI EE + AL IA + G +RDA LL++ + G+KI ++GI+ +
Sbjct: 187 YLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNLLERALVFGEKIEEDNVKNILGILPE 246
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE 589
+ L L L+ D+ + + + R +I Q L D+++ + LE
Sbjct: 247 EYLKSYLVAILNGDSDEIIALSENIERLGYSHDSVIRQSIELTKDMISRRELE 299
>gi|363892478|ref|ZP_09319645.1| DNA polymerase III, subunit gamma and tau [Eubacteriaceae bacterium
CM2]
gi|361964084|gb|EHL17137.1| DNA polymerase III, subunit gamma and tau [Eubacteriaceae bacterium
CM2]
Length = 535
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 194/365 (53%), Gaps = 18/365 (4%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +K+RPN FD ++GQ+ V+ L + I ++ Y+F G RGTGKTS ++IFA A+N
Sbjct: 3 MALYRKYRPNTFDNIIGQDQVIDVLKNQIKENKISHAYIFSGVRGTGKTSTAKIFARAIN 62
Query: 355 CLSLEDQK-PCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
C++ ++QK PC C C D E+D+ N D + L + P ++K
Sbjct: 63 CINYDEQKGPCNECESCL----NNYVDTIEIDAASNNSVDNIRQLKDTIMYQPSFGKYKT 118
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
+IIDE +L + +L +LE H+VF++ T E++K+P + LSR QK+ F K+ D
Sbjct: 119 YIIDEVHMLSTGAFNALLKTLEEPPSHIVFILATTEINKIPSTILSRCQKFEFKKVNSSD 178
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I RL I E I ++ A+DFI+ +G +RDA +LDQ+S G I+++ + G
Sbjct: 179 IKKRLVDILECENIPYEDNAVDFISNSCDGGVRDAISILDQVSSYG-NISMANIDFVTGR 237
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKID----PMQLISQLANLIMDILAGKCLE 589
S +++ L+D ++ + +L+ ID P Q+IS+L + + + + +
Sbjct: 238 ASIEDIDSLIDNMFKKNSFECIKLINDLISKSIDVKKLPFQIISRLIDALY--IQNEVIR 295
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL---SSSE 646
+ + A +N K + D+ +S+ + +SE E +++ S L +++ +E
Sbjct: 296 EDTTAAENL--KQITNKDID-ISKLITSISELENEMKYSNAPDILLQAFVIKQCREQITE 352
Query: 647 SSLDL 651
S+ D+
Sbjct: 353 SNFDI 357
>gi|452972498|gb|EME72329.1| DNA polymerase III subunits gamma and tau [Bacillus sonorensis L12]
Length = 566
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 183/353 (51%), Gaps = 6/353 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQLFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVSEPCNECSACKGITNGAISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+++I E AL+ IA ++G +RDA LLDQ +S G ++T+ A + G V
Sbjct: 185 GRMKKIVETEQFKVQDGALEIIAGAADGGMRDALSLLDQAISFSGDELTVDDALLITGSV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S + EL++ DP +LI + D+L + LE
Sbjct: 245 SQAYIGKLALSLHEKNVSEALETLNELLQQGKDPAKLIEDMIFYFRDMLLYQTAPDLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642
E K F + + + L + +L+++ ++++ + H + VA+++L
Sbjct: 305 LEKVKVDEAFQQLSKQIPAPALYEMIDVLNKSHQEMKWTNHPRIFFEVAVVKL 357
>gi|312872227|ref|ZP_07732300.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2062A-h1]
gi|311092311|gb|EFQ50682.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners LEAF
2062A-h1]
Length = 587
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 9 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 68
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 69 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 128
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 129 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 188
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 189 NRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGYA 248
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 249 DQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 307
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 308 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 360
>gi|187933489|ref|YP_001887621.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B
str. Eklund 17B]
gi|187721642|gb|ACD22863.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum B
str. Eklund 17B]
Length = 546
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 193/358 (53%), Gaps = 7/358 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+++VGQ + +L + I + YLF G RGTGKTS +++ A ALNC
Sbjct: 5 ALYREWRPRTFNDVVGQEHITTTLKNEILNDRIAHAYLFCGTRGTGKTSTAKVMAKALNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+++D +PC C C + G S DV E+D+ N DR+ ++ PP ++KI+I
Sbjct: 65 FNIQDGEPCNECEMCKKINEGLSMDVTELDAASNNGIDRIRDIIDDTKYPPQEGKYKIYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
+DE +L G L +LE +V+F++ T + KLP + LSR Q++ F +I DI+
Sbjct: 125 LDEVHMLSGGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRINQKDIS 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIV 534
RLR+I + ++ D+ +LD IA ++G++RD+ +LDQ +G I ++G+V
Sbjct: 185 DRLRKITESQNVSVDEKSLDLIARVADGAMRDSLSILDQAIAMGDNNIKYDDLISILGLV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKID----PMQLISQLANLIMDILAGKCLE- 589
+++ L D+ + + + ++ +L+ S D LI NL+M ++ E
Sbjct: 245 TNEYLFDITNSIVERNIEKAMVIIDKLVFSGKDIHLFIKDLIGHFRNLLMVKVSNTPEEI 304
Query: 590 -DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
D S + + ++++ R ++IL E E ++SK +L ++++++ E
Sbjct: 305 LDMSLENIELIKEQGKKIRIEEIMRGIRILQEGEANSKVSKQSRLYLELSIIKMCKIE 362
>gi|162448529|ref|YP_001610896.1| DNA polymerase III subunit tau [Sorangium cellulosum So ce56]
gi|161159111|emb|CAN90416.1| DNA polymerase III subunit Tau [Sorangium cellulosum So ce56]
Length = 829
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 154/300 (51%), Gaps = 4/300 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F++LVGQ V +L +AI+R V +LF G RG GKT+++RI A ALNC+
Sbjct: 42 LARKWRPQSFEDLVGQEHVSTTLANAIARDRVAHAFLFTGVRGVGKTTSARILAKALNCV 101
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PC C CA + G DV+E+D N D V L +S P RFKIFI+
Sbjct: 102 HGPTATPCQTCAPCAEITVGADVDVQEIDGASYNGVDEVRKLQESLPYRPARDRFKIFIV 161
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L W L +LE HV F+ T E+ K+P + LSR Q+Y F I IA+
Sbjct: 162 DEVHMLSNAAWNAFLKTLEEPPPHVKFIFATTEVHKVPVTILSRCQRYDFKLIGAQAIAA 221
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ----LSLLGKKITLSLAYELIG 532
RLR + +E I D AL +A ++ GS+RDA LLDQ + G +IT +++G
Sbjct: 222 RLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLDQVIAWVGTSGDRITAEGVAKVLG 281
Query: 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS 592
+ L L + D + V EL + D + + D++ K ED +
Sbjct: 282 VADRVVLHRLAGALVDGDPAACVRIVGELAQEGYDLPHVARDFLAHLRDLVVAKVCEDPA 341
>gi|325911570|ref|ZP_08173978.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
143-D]
gi|325476556|gb|EGC79714.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
143-D]
Length = 587
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 9 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 68
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 69 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 128
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 129 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 188
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 189 ARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGYA 248
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 249 DQVKIEALFLDL-LNKKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 307
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 308 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 360
>gi|223558002|gb|ACM91008.1| DNA polymerase III subunit gamma/tau [uncultured bacterium URE4]
Length = 577
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 183/353 (51%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ L+GQ+ + R+L ++I RG + YLF GPRG GKT+ +RIFA +NC
Sbjct: 8 ARKYRPDSFETLLGQDNIARTLSNSIKRGQLAHAYLFCGPRGVGKTTTARIFAKMINCAH 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D +PCG C C F GRS + E+D+ N D + +L++ +PP ++ ++II
Sbjct: 68 PGPDMEPCGECESCVSFQEGRSYCIHELDAASNNGVDDIKALIEQVQVPPQVGKYSVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE H +FV+ T E K+ + LSR Q Y F +I D+
Sbjct: 128 DEVHMLSQSAFNAFLKTLEEPPAHAIFVLATTEKHKILPTILSRCQTYDFNRIGIPDMVR 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
LR I +E I D +L IA K++G++RDA + DQ ++ G I + ++
Sbjct: 188 NLRGIAAKEGITIDDESLHVIAQKADGAMRDALTIFDQTVAFCGTDIKYEDVVRNLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
D +++ LS + + E++ + + ++ L++ + D++ + L +
Sbjct: 248 YDYSFGMVENFLSGSYAAALSSFDEILSKGFNALHFVAALSSHLRDLVVARTAGLDALLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
++ K + + + +Q L AL + + E + + + + AL++LS
Sbjct: 308 LPDSLKQRYREQAARCPLQFLYDALGVTTACEAGYKAAVNPRLHIEFALMKLS 360
>gi|167587030|ref|ZP_02379418.1| DNA polymerase III subunits gamma and tau [Burkholderia ubonensis
Bu]
Length = 371
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 186/365 (50%), Gaps = 26/365 (7%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F LVGQ VVR+L A+ G + YLF G RG GKT+ SRIFA ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ +PCG+CR C GR D E+D+ D + +L++ A P +RFK+++I
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F++ T + K+P + LSR +++ ++ G I S
Sbjct: 126 DEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVS 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L RI EE I F+ AL +A + GS+RDA L DQ ++ ++T + ++G +
Sbjct: 186 HLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALD 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI-----LAGKCLED 590
++ LLD + D + + A E+ + + LA+L+ I G LE+
Sbjct: 246 QTYMVRLLDALAAGDGTEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLEE 305
Query: 591 CSEARKNFFGKHTSEADMQKLSRAL---------KILSETEKQLRMSKHQTTWLTVALLQ 641
EA AD+++ ++ L +I + +L ++ + T+ LL+
Sbjct: 306 WPEA-----------ADLRRFAQTLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLR 354
Query: 642 LSSSE 646
+ + E
Sbjct: 355 MLAFE 359
>gi|349612185|ref|ZP_08891408.1| hypothetical protein HMPREF1027_00835 [Lactobacillus sp. 7_1_47FAA]
gi|348609014|gb|EGY58979.1| hypothetical protein HMPREF1027_00835 [Lactobacillus sp. 7_1_47FAA]
Length = 583
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 65 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 185 NRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITGYA 244
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 245 DQVKIEALFLDL-LNRKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 303
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 304 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 356
>gi|126454158|ref|YP_001066508.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1106a]
gi|242316585|ref|ZP_04815601.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 1106b]
gi|403518936|ref|YP_006653069.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei BPC006]
gi|126227800|gb|ABN91340.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 1106a]
gi|242139824|gb|EES26226.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 1106b]
gi|403074578|gb|AFR16158.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei BPC006]
Length = 825
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/360 (30%), Positives = 184/360 (51%), Gaps = 16/360 (4%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F LVGQ VVR+L A+ G + YLF G RG GKT+ SRIFA ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ +PCG+CR C GR D E+D+ D + +L++ A P +RFK+++I
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F++ T + K+P + LSR +++ ++ G I S
Sbjct: 126 DEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVS 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L RI EE I F+ AL F+A + GS+RDA L DQ ++ ++T + ++G +
Sbjct: 186 HLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGTLD 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
++ LLD ++D + A E+ + + LA+L+ I + A
Sbjct: 246 QTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQF------AP 299
Query: 596 KNFFGKHTSEADMQKLSRAL---------KILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ + AD+++ + L +I + +L ++ + T+ LL++ + E
Sbjct: 300 ASVLDEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRMLAFE 359
>gi|423223946|ref|ZP_17210415.1| DNA polymerase III, subunit gamma and tau [Bacteroides
cellulosilyticus CL02T12C19]
gi|392637392|gb|EIY31263.1| DNA polymerase III, subunit gamma and tau [Bacteroides
cellulosilyticus CL02T12C19]
Length = 615
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 185/353 (52%), Gaps = 7/353 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPTTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCMT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 PTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRIGVEDTVA 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G I+ E + ++
Sbjct: 188 HLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHISYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L D LS+ S+ ++ +++ D ++ L++ D+L K L +
Sbjct: 248 YEYYFRLTDHFLSNQVSDALLLLNDVLNKGFDASHFVTGLSSHFRDLLVSKDPATLALLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ + + + + L RA+K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRERYQSQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQVA 360
>gi|313148519|ref|ZP_07810712.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12]
gi|313137286|gb|EFR54646.1| DNA polymerase III subunit gamma/tau [Bacteroides fragilis 3_1_12]
Length = 614
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 187/354 (52%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMN 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 LTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L K LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCTLPFLYRAMKLCNDCDMNYRTSKNKRLLVELTLIQVA 360
>gi|302336481|ref|YP_003801688.1| DNA polymerase III subunits gamma and tau [Olsenella uli DSM 7084]
gi|301320321|gb|ADK68808.1| DNA polymerase III, subunits gamma and tau [Olsenella uli DSM 7084]
Length = 732
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 187/366 (51%), Gaps = 9/366 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
SL K+RP F ++VGQ VV +L A+ G + YLF GPRGTGKT+ +R+ A AL C
Sbjct: 3 SLYTKYRPQTFADVVGQQHVVSTLEHAVLEGRTSHAYLFCGPRGTGKTTMARLLAKALMC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRV-GSLMKSAFLPPFSSRFKIF 414
P G C +C L +SG DV E+D+ D V ++ P +K++
Sbjct: 63 ERGAGHLPDGSCEQCRLIASGDHPDVYELDAASRTGVDNVREEIISRVSYAPVRGGYKVY 122
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
IIDE +L + +L +LE +H +FV+ T + K+P + LSR Q++ F I + DI
Sbjct: 123 IIDEVHMLTTAAFNALLKTLEEPPEHTLFVLCTTDPQKIPETILSRVQRFDFHAIGNDDI 182
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGI 533
+ L R+C EE ++D AA++ + + G +RDA L+QLS+ G KI++ A +L+G
Sbjct: 183 KAHLTRVCDEEGFSYDVAAIELVVRHARGGMRDALSTLEQLSVFGSGKISVEAARDLLGE 242
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL------AGKC 587
VS +L + + + +L+ + D +Q +LA + D+ A
Sbjct: 243 VSGSQLASVACAMAERNVPSLFGTVADLVDAGRDLLQFSRELAAHLRDVYVVSAVGATPG 302
Query: 588 LEDC-SEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
+ D E + + + + +++ AL +S ++R + +Q L VAL +++ +
Sbjct: 303 VVDADEEGLRQLKDEALAFGSVDRVAHALDCVSAASSEMRTATNQRLVLEVALTRIARPK 362
Query: 647 SSLDLN 652
S L L
Sbjct: 363 SDLTLE 368
>gi|424664232|ref|ZP_18101268.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis HMW
616]
gi|404575814|gb|EKA80555.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis HMW
616]
Length = 614
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 187/354 (52%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMN 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 LTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L K LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCTLPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVA 360
>gi|421488789|ref|ZP_15936177.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK304]
gi|400368006|gb|EJP21021.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK304]
Length = 551
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 149/250 (59%), Gaps = 2/250 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV ++L AI + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFSQLVGQEVVAKTLKQAIEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N D + + + P +R+K++I
Sbjct: 64 PNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +Q+VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQDIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
+ I +E I+ + A++ IA ++ G +RDA +LDQ LSL G ++T +++ E+ G
Sbjct: 184 EHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEITGT 243
Query: 534 VSDDELLDLL 543
+S L D +
Sbjct: 244 ISLSALDDYV 253
>gi|416117342|ref|ZP_11594645.1| DNA polymerase III subunits gamma and tau [Campylobacter concisus
UNSWCD]
gi|384577299|gb|EIF06591.1| DNA polymerase III subunits gamma and tau [Campylobacter concisus
UNSWCD]
Length = 553
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 137/498 (27%), Positives = 235/498 (47%), Gaps = 44/498 (8%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+ K+RP FDEL+GQ V +SL A+ V+ YLF G RG+GKTS++RIFA AL C
Sbjct: 3 ALALKYRPKNFDELIGQEAVSKSLTHALDENRVSHAYLFSGLRGSGKTSSARIFAKALVC 62
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC +C +C + + R D+ E+D+ + D + L++ P ++R+KIFI
Sbjct: 63 EKGPTSRPCEVCAQCVMANESRHMDIIEMDAASHRKIDDIRELIEQTKYAPTAARYKIFI 122
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +V F++ T + KLP + LSR+Q + F +I +I
Sbjct: 123 IDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPTTVLSRTQHFRFKQISRYEIV 182
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
L I +E +++++ AL+ +A GS+RD LLDQ + G IT S E++G++
Sbjct: 183 KHLEFILSKEGVSYEREALEILARSGGGSLRDTLTLLDQAIIYGAGNITKSSVAEMLGLL 242
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ-LANLIMDILAGKCLEDCSE 593
+ +++ ++D + + EL +P +I + LANL
Sbjct: 243 DPSRIEQIIEHVANADKNAIRVLVTEL--ETYEPEMIIDEILANL--------------- 285
Query: 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLND 653
K F + + + R +IL++ + L +S L + L + +L+L D
Sbjct: 286 --KQRFLDNDPKFSLLIYERFFRILAQAKSMLSVSSDNGFVLMLMLFMMI---EALNLQD 340
Query: 654 SKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTATE 713
++ A K S I P+ + A K Y+ + I+ + E
Sbjct: 341 IDEAIKLA--KSEPSVAVIDPKAGVSEQIL-------AIKEAPKTPYEQFVAKIYDRSFE 391
Query: 714 LCQSNSLKTFLRKQGKLSSLHVNH-GLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGC 772
L + + S L+ N GL V D ++ +KSW ++ L ++ G
Sbjct: 392 LGE------IFKNHISFSFLNENELGLIVNAT----GDELAFFKKSWGVMHEILHTIFGK 441
Query: 773 NVEIRLLCAPVSAKENKP 790
++I +SA + +P
Sbjct: 442 KIKIVNAKKQISAPKPEP 459
>gi|150004786|ref|YP_001299530.1| DNA polymerase III [Bacteroides vulgatus ATCC 8482]
gi|149933210|gb|ABR39908.1| putative DNA polymerase III [Bacteroides vulgatus ATCC 8482]
Length = 603
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 7/351 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ+ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC +
Sbjct: 8 ARKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCQT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + C C C F+ RS ++ E+D+ N + + SL++ +PP ++K++II
Sbjct: 68 PTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE H +F++ T E K+ + LSR Q Y F +I D
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFNRIGIKDTID 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + E IN + AL IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L DL L + +++ ++++ D I+ L++ D+L K L +
Sbjct: 248 YEYYFKLTDLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFRDLLVSKDPSTLQLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
++ + + + D + L RA+K+ ++ + R SK++ + + L+Q
Sbjct: 308 VGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
>gi|325912930|ref|ZP_08175304.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
60-B]
gi|325477744|gb|EGC80882.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners UPII
60-B]
Length = 583
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 65 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 185 ARMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYQDTLAITGYA 244
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 245 DQVKIEALFLDL-LNKKTSQALEEVEELLNNGASVKNILDEIINLVVKAMLAIKGDTTVT 303
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 304 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 356
>gi|309810107|ref|ZP_07703953.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
2503V10-D]
gi|308169606|gb|EFO71653.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners SPIN
2503V10-D]
Length = 583
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 65 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 185 NRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITGYA 244
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 245 DQVKIEALFLDL-LNRKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 303
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 304 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 356
>gi|374674272|dbj|BAL52163.1| DNA polymerase III, subunits beta and tau [Lactococcus lactis
subsp. lactis IO-1]
Length = 552
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 144/246 (58%), Gaps = 1/246 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R FDE+VGQ VV +L +AI ++ YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRKYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N D + + + + +K++I
Sbjct: 65 PNQVDGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIREIRDKSTYAASQATYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVFV+ T EL K+P + +SR Q++ F I GDI
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSITTGDIR 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+ L +I +E + FD ALD IA + G +RDA LLDQ LS K+ + A + G +
Sbjct: 185 TYLAKIMADEGLEFDGRALDVIAKAAEGGMRDALSLLDQALSFSSGKLEENDALLVTGSI 244
Query: 535 SDDELL 540
+ D L+
Sbjct: 245 AADALV 250
>gi|319641967|ref|ZP_07996634.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
gi|345521132|ref|ZP_08800463.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA]
gi|254835484|gb|EET15793.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA]
gi|317386392|gb|EFV67304.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
Length = 603
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 7/351 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ+ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC +
Sbjct: 8 ARKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCQT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + C C C F+ RS ++ E+D+ N + + SL++ +PP ++K++II
Sbjct: 68 PTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE H +F++ T E K+ + LSR Q Y F +I D
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFNRIGIKDTID 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + E IN + AL IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L DL L + +++ ++++ D I+ L++ D+L K L +
Sbjct: 248 YEYYFKLTDLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFRDLLVSKDPSTLQLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
++ + + + D + L RA+K+ ++ + R SK++ + + L+Q
Sbjct: 308 VGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
>gi|91775925|ref|YP_545681.1| DNA polymerase III, tau subunit [Methylobacillus flagellatus KT]
gi|91709912|gb|ABE49840.1| DNA polymerase III, tau subunit [Methylobacillus flagellatus KT]
Length = 572
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 158/295 (53%), Gaps = 1/295 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP FDELVGQ VVR+L +A+ + + YLF G RG GKT+ SRI A +LNC
Sbjct: 6 LARKWRPKSFDELVGQEHVVRALTNALQQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PCG C C G D E+D+ D + SL++ A P R+K++++
Sbjct: 66 RGVSANPCGQCTACVAIDKGSFLDYVEMDAASNRGVDDMTSLLEKAIYAPTQGRYKVYML 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE L G + +L +LE HV F++ T + K+P + LSR +++ ++ IA+
Sbjct: 126 DEVHQLTGHAFNAMLKTLEEPPAHVKFILATTDPQKVPVTILSRCLQFNLRQMSSSGIAA 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + +E I F+ AL I +NGS+RDA LLDQ ++ G + ++G +
Sbjct: 186 HLQHVLTQENITFEPVALQLIGRSANGSMRDALSLLDQAIAYGGDSVNEKEVRTMLGAID 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED 590
L +LL+ L+ D + + +AR + I +S LANL+ +I + + D
Sbjct: 246 QAYLFELLNALLAQDGNALLAQARAMEERAISFDAALSDLANLLHEIAIAQAVPD 300
>gi|423312271|ref|ZP_17290208.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus
CL09T03C04]
gi|392688755|gb|EIY82039.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus
CL09T03C04]
Length = 603
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 7/351 (1%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP F+ +VGQ+ + +L +AI+ G + YLF GPRG GKT+ +RIFA +NC +
Sbjct: 8 ARKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFAKTINCQT 67
Query: 358 -LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + C C C F+ RS ++ E+D+ N + + SL++ +PP ++K++II
Sbjct: 68 PTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE H +F++ T E K+ + LSR Q Y F +I D
Sbjct: 128 DEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFNRIGIKDTID 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L+ + E IN + AL IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK-----CLED 590
+ L DL L + +++ ++++ D I+ L++ D+L K L +
Sbjct: 248 YEYYFKLTDLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFRDLLVSKDPSTLQLLE 307
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQ 641
++ + + + D + L RA+K+ ++ + R SK++ + + L+Q
Sbjct: 308 VGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
>gi|417941117|ref|ZP_12584404.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK313]
gi|343388410|gb|EGV00996.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK313]
Length = 551
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 162/290 (55%), Gaps = 2/290 (0%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV ++L A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ D +PC C C + G DV E+D+ N D + + + P +R+K++I
Sbjct: 64 PNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +Q+VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQDIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
+ I +E I+ + A++ IA ++ G +RDA +LDQ LSL G ++T +++ E+ G
Sbjct: 184 EHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEITGT 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDIL 583
+S L D + D S + L + + ++ L + D+L
Sbjct: 244 ISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLL 293
>gi|217421704|ref|ZP_03453208.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 576]
gi|217395446|gb|EEC35464.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 576]
Length = 712
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 155/287 (54%), Gaps = 1/287 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F LVGQ VVR+L A+ G + YLF G RG GKT+ SRIFA ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ +PCG+CR C GR D E+D+ D + +L++ A P +RFK+++I
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F++ T + K+P + LSR +++ ++ G I S
Sbjct: 126 DEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVS 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L RI EE I F+ AL +A + GS+RDA L DQ ++ ++T + ++G +
Sbjct: 186 HLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGTLD 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI 582
++ LLD ++D + A E+ + + LA L+ I
Sbjct: 246 QTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLAGLLHRI 292
>gi|428224128|ref|YP_007108225.1| DNA polymerase III subunit tau [Geitlerinema sp. PCC 7407]
gi|427984029|gb|AFY65173.1| DNA polymerase III, tau subunit [Geitlerinema sp. PCC 7407]
Length = 676
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 189/357 (52%), Gaps = 8/357 (2%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L K+RP F LVGQ+ + +L +AI + + YLF GPRGTGKTS++RI A +LNC+
Sbjct: 6 LHHKYRPQTFRGLVGQDAIATTLGNAIRQRRIAPAYLFSGPRGTGKTSSARILAKSLNCI 65
Query: 357 S--LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIF 414
L + PCG+C C + G + DV E+D+ D + +++ A P R+K++
Sbjct: 66 KGDLPTEDPCGVCEVCRAIAQGSAMDVIEIDAASNTGVDNIREIIERAQFAPVQCRYKVY 125
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
+IDEC +L + +L +LE HVVFV+ T + ++ + +SR Q++ F +I +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAM 185
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIV 534
L I +E+I+ + A+ +A S G +RDAE LLDQLSLL ++T+ ++L+G V
Sbjct: 186 VGHLMAIAEKESIDVTEEAVRLVAQVSQGGLRDAESLLDQLSLLDGQVTVDRVWDLVGAV 245
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED---- 590
+ +LL L + + D + + AR LM +P+ ++ LA+ D+L K D
Sbjct: 246 PERDLLALAEAIAADDATRVLDDARHLMDRGREPLIVLQNLASFYRDLLIAKTAPDRPDL 305
Query: 591 --CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+ D+ + RA + L +E Q++ + WL V LL L S
Sbjct: 306 VALTPPTWQRLCAFVQSLDLGVILRAQQHLRASEGQVKNTTQPRLWLEVTLLGLLPS 362
>gi|335031226|ref|ZP_08524676.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
SK52 = DSM 20563]
gi|333770144|gb|EGL47201.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
SK52 = DSM 20563]
Length = 554
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 187/348 (53%), Gaps = 5/348 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV +L A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ + +PC C C + G DV E+D+ N D + + + P ++ K++I
Sbjct: 64 PNQKGGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSLAKHKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +++VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTKDIV 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
+ I +E I+F+ A+ IA ++ G +RDA +LDQ LSL ++T +++ E+ G
Sbjct: 184 EHIAWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEITGS 243
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593
+S + L + L+ DTS + + S + + ++ L + D+L K + +
Sbjct: 244 ISLEALDAYVAAVLAHDTSVALKNLDVIFDSGKNMARFVTDLLQYLRDLLIVKTGGENTH 303
Query: 594 ARKNFFG--KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVAL 639
++F K E + + A K L+E + L+ K T +T+ L
Sbjct: 304 TSESFLENLKTPQERLFELIEIATKSLAEIKNSLQ-PKIYTEMMTIRL 350
>gi|321313687|ref|YP_004205974.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis BSn5]
gi|320019961|gb|ADV94947.1| DNA polymerase III subunits gamma and tau [Bacillus subtilis BSn5]
Length = 563
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 196/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +LD IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLDIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAQSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + + Q L + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRELSEQIPDQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ L + + ++
Sbjct: 365 AAVLPEVDMLMK 376
>gi|309803539|ref|ZP_07697632.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
LactinV 11V1-d]
gi|308164423|gb|EFO66677.1| DNA polymerase III, subunit gamma and tau [Lactobacillus iners
LactinV 11V1-d]
Length = 583
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 193/354 (54%), Gaps = 5/354 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +++RP F+ +VGQ+ + +L ++I R ++ +LF GPRGTGKTS ++IFA A+NC
Sbjct: 5 ALYRRWRPRTFEAVVGQSAICDTLRNSIKRHKISHAFLFSGPRGTGKTSCAKIFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +D +PC C C G D+ E+D+ N D + ++ P +K++I
Sbjct: 65 MDSKDGEPCNQCSNCLAADKGILNDIIEIDAASNNGVDEIRAIRDKVKYAPTQGYYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +HVVF++ T EL K+P + +SR+Q+Y+F +I + +
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISNDQLV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+R++ I +E I +D+ +L IA ++G +RD+ +LDQ LS KI + G
Sbjct: 185 NRMKFILDQEKIAYDEKSLQVIAQVADGGMRDSLSILDQILSYDQAKINYKDTLAITGYA 244
Query: 535 SDDELLDL-LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD-ILAGKCLEDCS 592
++ L LDL L+ TS + EL+ + ++ ++ NL++ +LA K +
Sbjct: 245 DQVKIEALFLDL-LNRKTSQALEEVEELLNNGASAKNILDEIINLVVKAMLAIKGDTTVT 303
Query: 593 EARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646
N+ + Q LS+ L++ ++ LR + Q L V ++++S+ +
Sbjct: 304 FLSANYL-EQLRLISTQVLSQTLQLANDALNSLRYTNQQQIPLKVFVVRISTQD 356
>gi|288554626|ref|YP_003426561.1| DNA polymerase III subunits gamma and tau [Bacillus pseudofirmus
OF4]
gi|288545786|gb|ADC49669.1| DNA polymerase III gamma and tau subunits [Bacillus pseudofirmus
OF4]
Length = 561
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 189/359 (52%), Gaps = 6/359 (1%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP ++VGQ + ++L +A+ + + YLF GPRGTGKTSA++I A A+NC
Sbjct: 5 ALYRVWRPQQLRDVVGQEHITKTLQNALLQNKFSHAYLFSGPRGTGKTSAAKIIAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C +SG DV E+D+ N D + + P +K++I
Sbjct: 65 EKAPVAEPCNECAACKGITSGAIVDVMEIDAASNNGVDEIRDIRDKVKFAPNEVPYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E K+P + +SR Q++ F +I + I
Sbjct: 125 IDEVHMLSTGAFNALLKTLEEPPGHVIFILATTEPHKIPLTIISRCQRFDFKRIPNTAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ I + + I D AL+ IA ++G +RDA LLDQ +S +TL + G V
Sbjct: 185 GRMNEILLHDGIEVDDEALNMIARAADGGMRDALSLLDQAISYAEGPLTLEDVLAITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
S+ L++L++ + D++ + +L+R +P +++ L + D+L K D +
Sbjct: 245 SEQVLVNLVEAVANKDSAVVLESLDQLVRDGKEPGRILEDLIYYMRDLLLCKTAPDSKDL 304
Query: 595 RK-----NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS 648
+ + + + D L +A+++L+ + ++++ S H L +AL++L + S
Sbjct: 305 LERADSGDIAVSLSEQFDFPWLYQAIEVLNGSVQEMKWSTHPKVILEMALIRLVNQRPS 363
>gi|224102151|ref|XP_002334208.1| predicted protein [Populus trichocarpa]
gi|222870040|gb|EEF07171.1| predicted protein [Populus trichocarpa]
Length = 180
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/179 (54%), Positives = 129/179 (72%)
Query: 427 WATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEA 486
W L LE Q VVF+ +T + D +PR+ SR QKY F KIKDGDI +RLR+I EE
Sbjct: 2 WLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFNKIKDGDIVARLRKISKEEN 61
Query: 487 INFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLA 546
++ + ALD I+ ++GS+RDAE +LDQLSLLGKKIT SL EL+G+VSD++LL+LL+LA
Sbjct: 62 LDVELGALDLISLNADGSLRDAETMLDQLSLLGKKITTSLVNELVGVVSDEKLLELLELA 121
Query: 547 LSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSE 605
+SSDT+ TV RAR+LM S +DPM L+SQLA+LIMDI+AG ++ + FG H E
Sbjct: 122 MSSDTAETVKRARDLMDSGVDPMVLMSQLASLIMDIIAGTYNVVDAKHGDSLFGTHNCE 180
>gi|307719903|ref|YP_003875435.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM
6192]
gi|306533628|gb|ADN03162.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM
6192]
Length = 510
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 172/335 (51%), Gaps = 5/335 (1%)
Query: 302 RPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQ 361
RP F +L GQ VV +L +A+ G V YLF GPRG GKTSA+RI A ALNC
Sbjct: 11 RPQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTSAARILAKALNCEQGVTP 70
Query: 362 KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQL 421
+PCG C C S G + DV E+D + V + + P +R+K++IIDE +
Sbjct: 71 EPCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVIREEVLFAPGKARYKVYIIDEVHM 130
Query: 422 LHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRI 481
L + +L ++E +VVF+ T EL ++P + SR Q+YHF I IAS LR
Sbjct: 131 LSNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQQYHFRLISPEVIASLLREA 190
Query: 482 CVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVSDDELL 540
E + ++ AL +IA +++GS+RDA L DQ +S +++ +L E +G+V + L
Sbjct: 191 ASEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSEGRLSYALIQEKLGLVGFERLQ 250
Query: 541 DLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL---IMDILAGKCLEDCSEARKN 597
+++ + + E++ S + Q + LA + + AG E +
Sbjct: 251 AVVEACAREEVKGALDLVHEILMSGVSVEQCVVDLAEYFRALTLVEAGIERESILGVAPS 310
Query: 598 FFGKHTSEA-DMQKLSRALKILSETEKQLRMSKHQ 631
F K A +L RA++++ ET + +R S +Q
Sbjct: 311 RFSKSVRTAFSPAQLERAMELILETYRNIRYSLNQ 345
>gi|423278273|ref|ZP_17257187.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis HMW
610]
gi|404586283|gb|EKA90856.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis HMW
610]
Length = 614
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 187/354 (52%), Gaps = 9/354 (2%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP+ F+ +VGQ + +L +AI+ + YLF GPRG GKT+ +RIFA +NC++
Sbjct: 8 ARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFAKTINCMN 67
Query: 358 L-EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
L D + C C C F+ RS ++ E+D+ N D + L++ +PP ++K++II
Sbjct: 68 LTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVRIPPQIGKYKVYII 127
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + L +LE +H +F++ T E K+ + LSR Q Y F +I D +
Sbjct: 128 DEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRISVDDTVN 187
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L + +E I + AL+ IA K++G +RDA + DQ +S G IT E + ++
Sbjct: 188 HLSYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNVLD 247
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGK------CLE 589
+ L D L + S+ ++ +++ D I+ L++ D+L K LE
Sbjct: 248 YEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSKDAATLQLLE 307
Query: 590 DCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643
+ R+ + + + + L RA+K+ ++ + R SK++ + + L+Q++
Sbjct: 308 VGASIRQR-YQEQAQKCTLPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQVA 360
>gi|167845385|ref|ZP_02470893.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei B7210]
Length = 391
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 157/287 (54%), Gaps = 1/287 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F LVGQ VVR+L A+ G + YLF G RG GKT+ SRIFA ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ +PCG+CR C GR D E+D+ D + +L++ A P +RFK+++I
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F++ T + K+P + LSR +++ ++ G I S
Sbjct: 126 DEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVS 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVS 535
L RI EE I F+ AL F+A + GS+RDA L DQ ++ ++T + ++G +
Sbjct: 186 HLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGTLD 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI 582
++ LLD ++D + A E+ + + LA+L+ I
Sbjct: 246 QTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRI 292
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,111,027,658
Number of Sequences: 23463169
Number of extensions: 606426542
Number of successful extensions: 1567984
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6229
Number of HSP's successfully gapped in prelim test: 3631
Number of HSP's that attempted gapping in prelim test: 1553039
Number of HSP's gapped (non-prelim): 11085
length of query: 1018
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 865
effective length of database: 8,769,330,510
effective search space: 7585470891150
effective search space used: 7585470891150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)