BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001748
(1018 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ V+ +L + +S G + YLF G RG GKTS +R+ A LNC
Sbjct: 13 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C GR D+ E+D+ + + L+ + P RFK+++I
Sbjct: 73 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 132
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 133 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 192
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ 514
+L I EE I + AL +A + GS+RDA L DQ
Sbjct: 193 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 230
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ V+ +L + +S G + YLF G RG GKTS +R+ A LNC
Sbjct: 9 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 68
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C GR D+ E+D+ + + L+ + P RFK+++I
Sbjct: 69 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 128
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 129 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 188
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ 514
+L I EE I + AL +A + GS+RDA L DQ
Sbjct: 189 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 226
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ V+ +L + +S G + YLF G RG GKTS +R+ A LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C GR D+ E+D+ + + L+ + P RFK+++I
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ 514
+L I EE I + AL +A + GS+RDA L DQ
Sbjct: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ V+ +L + +S G + YLF G RG GKTS +R+ A LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C GR D+ E+D+ + + L+ + P RFK+++I
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ 514
+L I EE I + AL +A + GS+RDA L DQ
Sbjct: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ V+ +L + +S G + YLF G RG GKTS +R+ A LNC
Sbjct: 28 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 87
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C GR D+ E+D+ + + L+ + P RFK+++I
Sbjct: 88 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 147
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 148 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRCLQFHLKALDVEQIRH 207
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ 514
+L I EE I + AL +A + GS+RDA L DQ
Sbjct: 208 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 245
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ V+ +L + +S G + YLF G RG GKTS +R+ A LNC
Sbjct: 28 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 87
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C GR D+ E+D+ + + L+ + P RFK+++I
Sbjct: 88 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 147
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 148 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 207
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ 514
+L I EE I + AL +A + GS+RDA L DQ
Sbjct: 208 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 245
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 80.1 bits (196), Expect = 6e-15, Method: Composition-based stats.
Identities = 69/241 (28%), Positives = 103/241 (42%), Gaps = 38/241 (15%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
E PW +K+RP D++VGQ +V+ L + G + LF GP G GKT+A+ A
Sbjct: 12 EKPWV--EKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHL-LFAGPPGVGKTTAALALAR 68
Query: 352 AL-------NCLSL--EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSA 402
L N L L D++ + RE VKE R+ +G
Sbjct: 69 ELFGENWRHNFLELNASDERGINVIRE----------KVKE-----FARTKPIGG----- 108
Query: 403 FLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462
+ FKI +DE L + + ++E S +V F++ K+ SR
Sbjct: 109 ------ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162
Query: 463 KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKI 522
+ F ++D DIA RLR I E + + L I + G +R A +L + L KKI
Sbjct: 163 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKI 222
Query: 523 T 523
T
Sbjct: 223 T 223
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 72.8 bits (177), Expect = 9e-13, Method: Composition-based stats.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 18/232 (7%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP DE+VGQ+ V++ L + R + LF GP GTGKT+ + A L +
Sbjct: 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHL-LFSGPPGTGKTATAIALARDLFGENW 67
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
D F + D + +D VR ++ ++A P + FKI +DE
Sbjct: 68 RDN-----------FIEMNASDERGIDVVR----HKIKEFARTA--PIGGAPFKIIFLDE 110
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
L + A + ++E S+ F++ + ++ SR + F + + RL
Sbjct: 111 ADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRL 170
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530
IC +E + + L+ + S G R A L + +G+ + Y++
Sbjct: 171 LEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQI 222
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 72.8 bits (177), Expect = 9e-13, Method: Composition-based stats.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 18/232 (7%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP DE+VGQ+ V++ L + R + LF GP GTGKT+ + A L +
Sbjct: 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHL-LFSGPPGTGKTATAIALARDLFGENW 67
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
D F + D + +D VR ++ ++A P + FKI +DE
Sbjct: 68 RDN-----------FIEMNASDERGIDVVR----HKIKEFARTA--PIGGAPFKIIFLDE 110
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
L + A + ++E S+ F++ + ++ SR + F + + RL
Sbjct: 111 ADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRL 170
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530
IC +E + + L+ + S G R A L + +G+ + Y++
Sbjct: 171 LEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQI 222
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 24/215 (11%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ GQN V+ ++ + G + LF+GP GTGKTS
Sbjct: 14 PWV--EKYRPETLDEVYGQNEVITTVRKFVDEGKLPHL-LFYGPPGTGKTSTI------- 63
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK--SAFLPPFSSRF 411
L RE ++ S V E+++ D V + +K ++ FS F
Sbjct: 64 ----------VALARE--IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGF 111
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ I+DE + + +E +++ F ++ KL + LS+ ++ F +
Sbjct: 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQ 171
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIR 506
I R+ + V E + A + SNG +R
Sbjct: 172 EAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 35/260 (13%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
++ PW +K+RP DE+ Q+ V L + + LF+GP GTGKTS
Sbjct: 23 AQQPWV--EKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHM-LFYGPPGTGKTSTILALT 79
Query: 351 AALNC----------LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK 400
L L+ D++ + RE K + R+ S ++
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVRE------------KVKNFARLTVSKPSKHDLE 127
Query: 401 SAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSR 460
+ PP+ KI I+DE + + + + ++E S F +I + ++ S+
Sbjct: 128 NYPCPPY----KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183
Query: 461 SQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-- 518
K+ F + + RLR I +E + D L+ I S G +R LL S
Sbjct: 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQ 243
Query: 519 ----GKKITLSLAYELIGIV 534
GK IT + EL G+V
Sbjct: 244 YLGDGKNITSTQVEELAGVV 263
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAIS----RGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
Q RP DE +GQ V + L A+ RG V L GP G GKT+ + I A+ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
Query: 355 CLSLEDQKPCGLCRE---CALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSA 402
P L ++ A+ +S DV +D + R+N++ V L+ SA
Sbjct: 77 TNIHVTSGPV-LVKQGDMAAILTSLERGDVLFIDEIHRLNKA--VEELLYSA 125
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAIS----RGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
Q RP DE +GQ V + L A+ RG V L GP G GKT+ + I A+ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
Query: 355 CLSLEDQKPCGLCRE---CALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSA 402
P L ++ A+ +S DV +D + R+N++ V L+ SA
Sbjct: 77 TNIHVTSGPV-LVKQGDMAAILTSLERGDVLFIDEIHRLNKA--VEELLYSA 125
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAIS----RGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
Q RP DE +GQ V + L A+ RG V L GP G GKT+ + I A+ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
Query: 355 CLSLEDQKPCGLCRE---CALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSA 402
P L ++ A+ +S DV +D + R+N++ V L+ SA
Sbjct: 77 TNIHVTSGPV-LVKQGDMAAILTSLERGDVLFIDEIHRLNKA--VEELLYSA 125
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAIS----RGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
Q RP DE +GQ V + L A+ RG V L GP G GKT+ + I A+ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
Query: 355 CLSLEDQKPCGLCRE---CALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSA 402
P L ++ A+ +S DV +D + R+N++ V L+ SA
Sbjct: 77 TNIHVTSGPV-LVKQGDMAAILTSLERGDVLFIDEIHRLNKA--VEELLYSA 125
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAIS----RGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
Q RP DE +GQ V + L A+ RG V L GP G GKT+ + I A+ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76
Query: 355 CLSLEDQKPCGLCRE---CALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSA 402
P L ++ A+ +S DV +D + R+N++ V L+ SA
Sbjct: 77 TNIHVTSGPV-LVKQGDMAAILTSLERGDVLFIDEIHRLNKA--VEELLYSA 125
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 407 FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHF 466
+ R+K II+E L + A + ++E S+++ +M+ + + S+
Sbjct: 131 LAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRC 190
Query: 467 PKIKDGDIASRLRRICVEEAINFD-QAALDFIAAKSNGSIRDAEMLLDQLSL 517
P D +I++ L + E I + + L IA SNG++R + ++L+ ++L
Sbjct: 191 PAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMAL 242
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAIS----RGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
Q RP DE +GQ V + L A+ RG V L GP G G+T+ + I A+ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQ 76
Query: 355 CLSLEDQKPCGLCRE---CALFSSGRSRDVKEVDSV-RINRSDRVGSLMKSA 402
P L ++ A+ +S DV +D + R+N++ V L+ SA
Sbjct: 77 TNIHVTSGPV-LVKQGDMAAILTSLERGDVLFIDEIHRLNKA--VEELLYSA 125
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 40/222 (18%)
Query: 289 TYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRI 348
T +E L QK+RP+ DE + + S S+G + L GTGKT+ ++
Sbjct: 8 TVNEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK- 66
Query: 349 FAAALNCLSLEDQKPCGLCREC---ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP 405
LC + +F +G D K +D VR G L A
Sbjct: 67 ----------------ALCHDVNADMMFVNG--SDCK-IDFVR-------GPLTNFASAA 100
Query: 406 PFSSRFKIFIIDECQLLH-GETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKY 464
F R K+ +IDE E+ + + +E S + ++ +D + + SR +
Sbjct: 101 SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160
Query: 465 HFPKIKDGD-------IASRLRRICVEEAINFDQAALDFIAA 499
F + D D + RL IC E I A + +AA
Sbjct: 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI--ADMKVVAA 200
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 294 PWSLSQKFRPNF-FDELVGQ-NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
P + K RP F F +VGQ ++ + LL+A+ G+ L G RGTGK++A R AA
Sbjct: 10 PSASGAKTRPVFPFSAIVGQEDMKLALLLTAVDPGI--GGVLVFGDRGTGKSTAVRALAA 67
Query: 352 AL 353
L
Sbjct: 68 LL 69
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 14/148 (9%)
Query: 385 DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV----LNS-----LE 435
D V + + + S LPP + + + + C L + W T LNS L+
Sbjct: 434 DKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIAL-SQRWITAKEDDLNSFNATDLK 492
Query: 436 NISQHVV--FVMITPELDKLPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAINFDQA 492
++S H + F+ T + LP + R Q+ Y+F I + +I R R+C++ D
Sbjct: 493 DLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE-DAI 551
Query: 493 ALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
L A G+++ L L+ K
Sbjct: 552 PLALKMATEQGAMKFTRPLFKDLAAFDK 579
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 309 LVGQNVVVRSLLSAISRGMV--------TSFYLFHGPRGTGKTSASRIFAAAL 353
+VGQ+ +R++ AI R +LF GP G GKT ++ AA L
Sbjct: 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 385 DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV----LNS-----LE 435
D V + + + S LPP + + + + C L + W T LNS L+
Sbjct: 432 DKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIAL-SQRWITAKEDDLNSFNATDLK 490
Query: 436 NISQHVV--FVMITPELDKLPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAINFDQA 492
++S H + F+ T + LP + R Q+ Y+F I + +I R R+C++ D
Sbjct: 491 DLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE-DAI 549
Query: 493 ALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
L A G ++ L L+ K
Sbjct: 550 PLALKMATEQGRMKFTRPLFKDLAAFDK 577
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 385 DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV----LNS-----LE 435
D V + + + S LPP + + + + C L + W T LNS L+
Sbjct: 434 DKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIAL-SQRWITAKEDDLNSFNATDLK 492
Query: 436 NISQHVV--FVMITPELDKLPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAINFDQA 492
++S H + F+ T + LP + R Q+ Y+F I + +I R R+C++ D
Sbjct: 493 DLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE-DAI 551
Query: 493 ALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
L A G ++ L L+ K
Sbjct: 552 PLALKMATEQGRMKFTRPLFKDLAAFDK 579
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 385 DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV----LNS-----LE 435
D V + + + S LPP + + + + C L + W T LNS L+
Sbjct: 440 DKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIAL-SQRWITAKEDDLNSFNATDLK 498
Query: 436 NISQHVV--FVMITPELDKLPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAINFDQA 492
++S H + F+ T + LP + R Q+ Y+F I + +I R R+C++ D
Sbjct: 499 DLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE-DAI 557
Query: 493 ALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
L A G ++ L L+ K
Sbjct: 558 PLALKMATEQGRMKFTRPLFKDLAAFDK 585
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 385 DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV----LNS-----LE 435
D V + + + S LPP + + + + C L + W T LNS L+
Sbjct: 440 DKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIAL-SQRWITAKEDDLNSFNATDLK 498
Query: 436 NISQHVV--FVMITPELDKLPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAINFDQA 492
++S H + F+ T + LP + R Q+ Y+F I + +I R R+C++ D
Sbjct: 499 DLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE-DAI 557
Query: 493 ALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
L A G ++ L L+ K
Sbjct: 558 PLALKMATEQGRMKFTRPLFKDLAAFDK 585
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 385 DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV----LNS-----LE 435
D V + + + S LPP + + + + C L + W T LNS L+
Sbjct: 434 DKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIAL-SQRWITAKEDDLNSFNATDLK 492
Query: 436 NISQHVV--FVMITPELDKLPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAINFDQA 492
++S H + F+ T + LP + R Q+ Y+F I + +I R R+C++ D
Sbjct: 493 DLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE-DAI 551
Query: 493 ALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
L A G ++ L L+ K
Sbjct: 552 PLALKMATEQGRMKFTRPLFKDLAAFDK 579
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 385 DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV----LNS-----LE 435
D V + + + S LPP + + + + C L + W T LNS L+
Sbjct: 435 DKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIAL-SQRWITAKEDDLNSFNATDLK 493
Query: 436 NISQHVV--FVMITPELDKLPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAINFDQA 492
++S H + F+ T + LP + R Q+ Y+F I + +I R R+C++ D
Sbjct: 494 DLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE-DAI 552
Query: 493 ALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
L A G ++ L L+ K
Sbjct: 553 PLALKMATEQGRMKFTRPLFKDLAAFDK 580
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 385 DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV----LNS-----LE 435
D V + + + S LPP + + + + C L + W T LNS L+
Sbjct: 435 DKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIAL-SQRWITAKEDDLNSFNATDLK 493
Query: 436 NISQHVV--FVMITPELDKLPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAINFDQA 492
++S H + F+ T + LP + R Q+ Y+F I + +I R R+C++ D
Sbjct: 494 DLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE-DAI 552
Query: 493 ALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
L A G ++ L L+ K
Sbjct: 553 PLALKMATEQGRMKFTRPLFKDLAAFDK 580
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 311 GQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
G N V L + GMV GP GTGKT+A +I A L
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIV---GPNGTGKTTAVKILAGQL 141
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 311 GQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
G N V L + GMV GP GTGKT+A +I A L
Sbjct: 88 GVNAFVLYRLPIVKDGMVVGIV---GPNGTGKTTAVKILAGQL 127
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 281 KLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSL----LSAISRGMVTSFYLFHG 336
+++ E ++ ET RP+ FD +GQ + ++L +A R LF G
Sbjct: 6 RIVEIEKYSFDET---YETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSG 62
Query: 337 PRGTGKTSASRIFA 350
P G GKT+ + I +
Sbjct: 63 PAGLGKTTLANIIS 76
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 309 LVGQNVVVRSLLSAISRGMV--------TSFYLFHGPRGTGKTSASRIFAAAL 353
+VGQ+ +R++ AI R +LF GP G GKT ++ AA L
Sbjct: 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 309 LVGQNVVVRSLLSAISRGMV--------TSFYLFHGPRGTGKTSASRIFAAAL 353
+VGQ+ +R++ AI R +LF GP G GKT ++ AA L
Sbjct: 16 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 68
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 297 LSQKFRPNFFDELVGQNVVV---RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
L+ + RP + +GQ ++ + L AI G + S L+ GP GTGKT+ + + A
Sbjct: 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILW-GPPGTGKTTLAEVIARYA 74
Query: 354 NC 355
N
Sbjct: 75 NA 76
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 117 LDNYQSKEEEVDGHESLGERRCINHLNREFDMCCSMP 153
D+Y SK+ + E L E++C+ HL E C +P
Sbjct: 340 FDDYLSKKIKKSEDELLAEKKCVAHLTGEGIAVCDLP 376
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
Length = 142
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 777 RLLCAPVSAKENKPSFSLFSCSRWVQQSRSTTERE-TDSDYSDYFSEKPMIRARHTLTCS 835
R L A + + K +F + S W + R+ E+ + YF++ C
Sbjct: 20 RSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND----------NCD 69
Query: 836 SDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTV 869
+ TD + +R +GN+L+ GT+
Sbjct: 70 FMVSGPIISIVYEGTDAISKIRRLQGNILTPGTI 103
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 777 RLLCAPVSAKENKPSFSLFSCSRWVQQSRSTTERE-TDSDYSDYFSEKPMIRARHTLTCS 835
R L A + + K +F + S W + R+ E+ + YF++ C
Sbjct: 20 RSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND----------LCD 69
Query: 836 SDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTV 869
+ TD + +R +GN+L+ GT+
Sbjct: 70 FMVSGPIISIVYEGTDAISKIRRLQGNILTPGTI 103
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 777 RLLCAPVSAKENKPSFSLFSCSRWVQQSRSTTERE-TDSDYSDYFSEKPMIRARHTLTCS 835
R L A + + K +F + S W + R+ E+ + YF++ C
Sbjct: 35 RSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND----------NCD 84
Query: 836 SDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTV 869
+ TD + +R +GN+L+ GT+
Sbjct: 85 FMVSGPIISIVYEGTDAISKIRRLQGNILTPGTI 118
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 604 SEADMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
++AD +KLS+AL L+E + R+S H T T+
Sbjct: 384 TKADQEKLSQALARLAEEDPTFRVSTHPETGQTI 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,905,219
Number of Sequences: 62578
Number of extensions: 1081026
Number of successful extensions: 2528
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2490
Number of HSP's gapped (non-prelim): 50
length of query: 1018
length of database: 14,973,337
effective HSP length: 108
effective length of query: 910
effective length of database: 8,214,913
effective search space: 7475570830
effective search space used: 7475570830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)