BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001748
(1018 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P09122|DPO3X_BACSU DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain
168) GN=dnaX PE=3 SV=3
Length = 563
Score = 179 bits (454), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 197/372 (52%), Gaps = 8/372 (2%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +L+ IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
S + L + S+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL--SSSES 647
E K F + + + Q L + IL+++ ++++ + H + VA++++ +S +S
Sbjct: 305 LEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQS 364
Query: 648 SLDLNDSKLCLR 659
+ DL + + ++
Sbjct: 365 AADLPEVDMLMK 376
>sp|Q89A95|DPO3X_BUCBP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=dnaX PE=3 SV=1
Length = 370
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 158/284 (55%), Gaps = 1/284 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F++++GQ +V ++ +++ G + +LF G RGTGKT+ +RI A +LNC
Sbjct: 6 LAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKSLNCK 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PC C C G D+ EVD+ + + + L+ + P RFKI++I
Sbjct: 66 LGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRYLPSKGRFKIYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L ++E QH+ F++ T L+K+P + LSR ++ I +I +
Sbjct: 126 DEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPINLNEIVA 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
+ I +E I ++ AL I+ KS GS+RDA L +Q+ +GK IT + + +G++
Sbjct: 186 CISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRKTLGMLY 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLI 579
+D++L +L L+ D N V+ + + + I+ ++ ++ L+
Sbjct: 246 EDQILYILTTLLNKDLKNLVLCFKYISDTHINFENILVEILQLL 289
>sp|P43746|DPO3X_HAEIN DNA polymerase III subunit tau/gamma OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaX PE=3
SV=1
Length = 688
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 137/248 (55%), Gaps = 1/248 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ ++ +L + + + YLF G RG GKTS +R+FA LNC+
Sbjct: 6 LARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PCG C C G D+ E+D+ + + L+ + P RFK+++I
Sbjct: 66 HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE ++V F++ T + KLP + LSR ++H + + I+
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQISQ 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIGIVS 535
L I +E I F+ AL +A + GSIRD+ L DQ +G +++T ++ ++G++
Sbjct: 186 HLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLGLLD 245
Query: 536 DDELLDLL 543
D+ +D+L
Sbjct: 246 DNYSVDIL 253
>sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=dnaX PE=3 SV=1
Length = 681
Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 156/288 (54%), Gaps = 3/288 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L QK+RP F + VGQ+ + R +++AI++ + Y+F G RGTGKT+ ++I A A+NCL
Sbjct: 5 LYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAINCL 64
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ + C C C +S + DV E+D+ N + + L ++ F PF + K++I+
Sbjct: 65 NW-NGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKKVYIL 123
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++W+ +L +LE +V+F+ T E +K+P + LSR Q + F +I + I
Sbjct: 124 DEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLIQQ 183
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA--YELIGIV 534
RL + +E+I AL +A + GS+RD LLDQ+S + T+SLA + ++
Sbjct: 184 RLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKTFNLL 243
Query: 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI 582
++ ++ LS D + I+ + + +L L +D+
Sbjct: 244 DKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDL 291
>sp|P57553|DPO3X_BUCAI DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=dnaX PE=3 SV=1
Length = 361
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 182/355 (51%), Gaps = 6/355 (1%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP +F +++GQ +V ++ + +S G + +L G RG GKT+ +R+ A +LNC
Sbjct: 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSLNCQ 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PC C C G DV E+D + + + ++ S + P SRFK+++I
Sbjct: 66 NGITSDPCRQCIICKEIEKGLCLDVIEIDGASRTKVEEMREILDSIYYSPIKSRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV FV+ T ++D++P++ +SR + I + I
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRCLYFKLQIISEEKIFK 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ I ++E+I+ D+ +L IA ++GSIRDA LL+ LG + + +++G++
Sbjct: 186 FLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGNGHVNIKNVTDMLGLLP 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL-----ED 590
+ L D L D+ T++ ++ ++ +++ ++ + I + +
Sbjct: 246 EKYSFLLTDAVLKKDSKKTMLLLNKISSIGVEWEEILIEMLRFLYHISTSQSFPLVWEKI 305
Query: 591 CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645
+E KN K + +IL K+L+ + Q + ++LL++ S+
Sbjct: 306 FTEKYKNQIQKIAQNNKKTNIQLCYQILLNGRKELKFAPSQKIGVEMSLLRVISA 360
>sp|P06710|DPO3X_ECOLI DNA polymerase III subunit tau OS=Escherichia coli (strain K12)
GN=dnaX PE=1 SV=1
Length = 643
Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 148/287 (51%), Gaps = 1/287 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ V+ +L + +S G + YLF G RG GKTS +R+ A LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C GR D+ E+D+ + + L+ + P RFK+++I
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
+L I EE I + AL +A + GS+RDA L DQ G +++ ++G +
Sbjct: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245
Query: 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDI 582
DD+ L L++ + ++ + E I+ L+ ++ L+ I
Sbjct: 246 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292
>sp|P74876|DPO3X_SALTY DNA polymerase III subunit tau OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dnaX PE=3 SV=2
Length = 642
Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 137/255 (53%), Gaps = 1/255 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ V+ +L + +S G + YLF G RG GKTS +R+ A LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C GR D+ E+D+ + + L+ + P RFK+++I
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE HV F++ T + KLP + LSR ++H + I
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
+L I EE I + AL ++ ++GS+RDA L DQ G +++ ++G +
Sbjct: 186 QLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLD 245
Query: 536 DDELLDLLDLALSSD 550
DD+ L L++ + ++
Sbjct: 246 DDQALSLVEAVVDAN 260
>sp|P47658|DPO3X_MYCGE DNA polymerase III subunit gamma/tau OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=dnaX PE=3
SV=3
Length = 597
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 143/254 (56%), Gaps = 2/254 (0%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
QK+RP F + +GQ + + L++AI+R + + Y+F G RGTGKT+ ++I A A+NCL+
Sbjct: 7 QKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAINCLNW 66
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
+ C C C ++ + D+ E+D+ N + + L+++ F PF+ + K++I+DE
Sbjct: 67 DQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKVYILDE 126
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
+L ++W +L +LE +V+F+ T E +K+P + LSR Q + F KI I RL
Sbjct: 127 AHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDLILERL 186
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGIVSD 536
I +E I ++ AL IA S GS+RD LLDQ+S +KI+++ + IV
Sbjct: 187 NDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKTFNIVDR 246
Query: 537 DELLDLLDLALSSD 550
+ + LS D
Sbjct: 247 NAKFTFIKAVLSGD 260
>sp|P63975|DPO3X_MYCTU DNA polymerase III subunit gamma/tau OS=Mycobacterium tuberculosis
GN=dnaX PE=3 SV=1
Length = 578
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 6/244 (2%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +K+RP F E+VGQ V L A+ G + YLF GPRG GKTS++RI A +LN
Sbjct: 1 MALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60
Query: 355 CLSLEDQKPCGLCRECALFS--SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
C PCG+C C + + S DV E+D+ D L AF P SR++
Sbjct: 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
+FI+DE ++ + +L +E +H++F+ T E +K+ + SR+ Y F +
Sbjct: 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK---ITLSLAYE 529
+ + L RIC +E + D A + GS RD +LDQL L G +T + A
Sbjct: 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL-LAGAADTHVTYTRALG 239
Query: 530 LIGI 533
L+G+
Sbjct: 240 LLGV 243
>sp|P63976|DPO3X_MYCBO DNA polymerase III subunit gamma/tau OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=dnaX PE=3 SV=1
Length = 578
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 6/244 (2%)
Query: 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L +K+RP F E+VGQ V L A+ G + YLF GPRG GKTS++RI A +LN
Sbjct: 1 MALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60
Query: 355 CLSLEDQKPCGLCRECALFS--SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
C PCG+C C + + S DV E+D+ D L AF P SR++
Sbjct: 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
+FI+DE ++ + +L +E +H++F+ T E +K+ + SR+ Y F +
Sbjct: 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK---ITLSLAYE 529
+ + L RIC +E + D A + GS RD +LDQL L G +T + A
Sbjct: 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL-LAGAADTHVTYTRALG 239
Query: 530 LIGI 533
L+G+
Sbjct: 240 LLGV 243
>sp|Q8K983|DPO3X_BUCAP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=dnaX PE=3 SV=1
Length = 363
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 137/260 (52%), Gaps = 1/260 (0%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F +++GQ +V+++ + S G + +L G RG GKT+ +R+ A +LNC
Sbjct: 6 LARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSLNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PC C C G D E+D+ + + + ++ + + P SRFK+++I
Sbjct: 66 IGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE QH+ F++ T +++K+P++ SR + + + DI +
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSEEDIFN 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIVS 535
L+ I + NFD+ AL I+ +NGS+RDA LL+ L K I L E++GI +
Sbjct: 186 FLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEMLGIPN 245
Query: 536 DDELLDLLDLALSSDTSNTV 555
L L D+ +
Sbjct: 246 KKHAFLLTKFLLEQDSKKMM 265
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 24/273 (8%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
SE W +K+RP DE+V Q +V+ L + + LF GP GTGKT+A+ A
Sbjct: 2 SEELWV--EKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHL-LFAGPPGTGKTTAALALA 58
Query: 351 AALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSR 410
L S D + D + +D +R R+ ++ LP
Sbjct: 59 HDLYGESWRDNT-----------LELNASDERGIDVIR----SRIKDYART--LPIGDVP 101
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
FK+ I+DE + G+ + ++E S++ F++I K+ SR + F +
Sbjct: 102 FKLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLP 161
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530
GD RLR I +E I D AL+ I +S G +R A L S + + +T + Y
Sbjct: 162 KGDAFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAA 221
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMR 563
+G V E+ ++++ AL + ++ AR+ +R
Sbjct: 222 LGRVKPKEVREMIESALKGN----LLEARDKLR 250
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 76/282 (26%), Positives = 127/282 (45%), Gaps = 41/282 (14%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAI-SRGMVTSFYLFHGPRGTGKTSASRIF 349
+E W+ +K+RP DE+V Q +V L + R M LF GP GTGKT+A+
Sbjct: 9 AELLWA--EKYRPKTLDEIVDQEEIVSRLKQFVKERNM--PHLLFAGPPGTGKTTAAHCL 64
Query: 350 AAALNC---------LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK 400
A L L+ D++ + R VKE R+
Sbjct: 65 AHDLFGENYRQYMLELNASDERGIDVIRS----------KVKEFARTRV----------- 103
Query: 401 SAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSR 460
+A +P FKI ++DE + + + +E + F++I K+ SR
Sbjct: 104 AANIP-----FKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSR 158
Query: 461 SQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
+ F +K D+ SRL+ I +E + D+ AL+ I S G +R A +L + LG
Sbjct: 159 CAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAAAALG- 217
Query: 521 KITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELM 562
K+T+ Y+++G+ E+ ++ LAL+ + ++ + RELM
Sbjct: 218 KVTVDSVYKVVGLAHPREIRQMIQLALAGNFNDAREKLRELM 259
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 85.9 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 25/277 (9%)
Query: 287 ISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSAS 346
+S E W+ +K+RP D++V Q +V L + + LF GP GTGKT+A+
Sbjct: 1 MSLEEEILWA--EKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHL-LFSGPPGTGKTTAA 57
Query: 347 RIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPP 406
A ++ L ++ + F + D + +D +R N+ + +P
Sbjct: 58 ---LALVHDLYGDNYR--------QYFLELNASDERGIDVIR-NKVKEFARTVAGGNVP- 104
Query: 407 FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHF 466
FK+ ++DE + + + ++E ++ F++ L K+ SR+ + F
Sbjct: 105 ----FKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRF 160
Query: 467 PKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSL 526
+K D+ +RL I E + +DQ AL+ I + G +R A +L S+ G K+T+
Sbjct: 161 YPLKKEDVVARLAYIAKNEKVEYDQKALETIYDITQGDMRKAINILQASSVYG-KVTVEA 219
Query: 527 AYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMR 563
Y+++G+ E+ +++ LAL + ++ARE +R
Sbjct: 220 VYKVLGLAQPKEIREMIMLALQGN----FLKAREKLR 252
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 85.1 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 19/265 (7%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP DE+V Q +V L + + LF GP GTGKT+A+ L +
Sbjct: 8 AEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHL-LFAGPPGTGKTTAALALVRDLYGNN 66
Query: 358 LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIID 417
F + D + +D +R N+ + S +P FK+ ++D
Sbjct: 67 YRQ-----------YFLELNASDERGIDVIR-NKVKEFARTVASNNVP-----FKVILLD 109
Query: 418 ECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASR 477
E + + + ++E ++ F++ L K+ SR+ + F +K D+ +R
Sbjct: 110 EADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNR 169
Query: 478 LRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDD 537
L +I E + FD ++ I + G +R A ++ S G KIT+ Y+++G+
Sbjct: 170 LIQIAKNEKVEFDPKGIETIFDITQGDMRKAINVIQAASAYG-KITVETVYKVLGLAQPK 228
Query: 538 ELLDLLDLALSSDTSNTVIRARELM 562
E+ ++L LALS + REL+
Sbjct: 229 EIREMLHLALSGKFLQARDKLRELL 253
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 68/274 (24%), Positives = 119/274 (43%), Gaps = 32/274 (11%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL----- 353
+K+RP FDE+V V ++ L RG LF+GP GTGKT+ + + A L
Sbjct: 8 EKYRPRSFDEVVDLEEV-KARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYW 66
Query: 354 --NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
N L L + D + ++ +R +RV ++A P + F
Sbjct: 67 RENTLELN------------------ASDERGINVIR----ERVKEFARTA--PVGKAPF 102
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ I+DE + + + +E +Q+ F+++ + ++ +SR + F +
Sbjct: 103 KLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPR 162
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
+A RLR I E I A+D I S G +R A LL + K + +
Sbjct: 163 SLMAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASAT 222
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSK 565
++ ++++L +LA + D + + RELM K
Sbjct: 223 TMIRPADVVELFNLAFNGDVTKAREKLRELMYVK 256
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 22/264 (8%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP DE+VGQ+ V++ L + R + LF GP GTGKT+ + A L +
Sbjct: 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHL-LFSGPPGTGKTATAIALARDLFGENW 67
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
D F + D + +D VR ++ ++A P + FKI +DE
Sbjct: 68 RDN-----------FIEMNASDERGIDVVR----HKIKEFARTA--PIGGAPFKIIFLDE 110
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
L + A + ++E S+ F++ + ++ SR + F + + RL
Sbjct: 111 ADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRL 170
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDE 538
IC +E + + L+ + S G R A L + +G+ + Y++ +E
Sbjct: 171 LEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEE 230
Query: 539 LLDLLDLALSSDTSNTVIRARELM 562
+ +L+ AL + + AREL+
Sbjct: 231 MTELIQTALKGN----FMEARELL 250
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 78/286 (27%), Positives = 122/286 (42%), Gaps = 43/286 (15%)
Query: 287 ISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSAS 346
+S+ E W +K+RP D++V Q VV L + + + LF GP GTGKT+A+
Sbjct: 1 MSSVLEMLWV--EKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHL-LFAGPPGTGKTTAA 57
Query: 347 RIFAAALNC---------LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGS 397
A L L+ D++ + RE VKE R
Sbjct: 58 HALAHDLFGENYRQYMLELNASDERGINVIRE----------KVKEFARSRT-------- 99
Query: 398 LMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSA 457
PP FKI ++DE + + + +E S F++I K+
Sbjct: 100 -------PP-EIPFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPI 151
Query: 458 LSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL 517
SR + F + D+ RLR I E +++++ ALD I S G +R A +L S
Sbjct: 152 QSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASY 211
Query: 518 LGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMR 563
LG K+T+ Y ++G+ E+ ++L AL D + AR L+R
Sbjct: 212 LG-KVTVDAVYRVVGMAKPREVREMLATALKGDFT----AARSLLR 252
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 69/278 (24%), Positives = 120/278 (43%), Gaps = 20/278 (7%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP D+++G +V L S +SR + S LF GP GTGKT+ + A L
Sbjct: 18 EKYRPQTLDDVMGHENIVGRLKSYVSRNDL-SHMLFSGPAGTGKTTCATAIARELYGDDW 76
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
+ F + D + +D VR DR+ + +++F ++I +DE
Sbjct: 77 REH-----------FLELNASDERGIDVVR----DRIKNFARTSF---GGVEYRIIFLDE 118
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
L + + + ++E S +V F++ ++ SR + F + D +A +
Sbjct: 119 ADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEI 178
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDE 538
R I EE I + LD + ++G +R A L S+ G + S Y + +E
Sbjct: 179 RTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEE 238
Query: 539 LLDLLDLALSSD-TSNTVIRARELMRSKIDPMQLISQL 575
+ ++ AL D T++ R L I +I QL
Sbjct: 239 IRTMVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQL 276
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 80.1 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 23/280 (8%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP ++++GQ ++ L S +++ + LF G GTGKT+A+
Sbjct: 10 EKYRPRVLEDIIGQQEIIERLRSYVAKREMPHL-LFTGNAGTGKTTAA------------ 56
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS-AFLPPFS-SRFKIFII 416
L RE F + +E+++ D V + +K A PF S FKI +
Sbjct: 57 -----VALARE--FFGEDWQMNFRELNASDERGIDVVRNQIKQFARTSPFGGSTFKILFL 109
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE L + + + ++E +Q F++ K+ SR Y F + ++
Sbjct: 110 DEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSE 169
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSD 536
++RI ++ + + +D I + G +R A L ++LG+ I+ + + +
Sbjct: 170 MVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARP 229
Query: 537 DELLDLLDLALSSDTSNTVIRARELMRSK-IDPMQLISQL 575
+E+ DL+DL+L+ + + L+ + I P +LISQL
Sbjct: 230 EEIDDLIDLSLAGNFLGAGSSLQALLHDRGIAPQELISQL 269
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 66/274 (24%), Positives = 119/274 (43%), Gaps = 32/274 (11%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL----- 353
+K+RP FDE+V V L + G + LF+GP GTGKT+ + + A L
Sbjct: 8 EKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHL-LFYGPPGTGKTTMALVLARELYGEYW 66
Query: 354 --NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
N L L + D + ++ +R +RV ++A P + F
Sbjct: 67 RENTLELN------------------ASDERGINVIR----ERVKEFARTA--PVGKAPF 102
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ I+DE + + + +E +Q+ F+++ + ++ +SR + F +
Sbjct: 103 KLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPR 162
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
+A RL+ I E + + A+D I S G +R A +L + K + ++
Sbjct: 163 HLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAA 222
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSK 565
+ ++++L +LALS D + RELM K
Sbjct: 223 AAIRPTDIVELFNLALSGDYLKAREKMRELMYVK 256
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 61/265 (23%), Positives = 115/265 (43%), Gaps = 18/265 (6%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP ++++G + R L+S + G + LF GP G GKT+ + A L +
Sbjct: 8 TEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHL-LFSGPPGVGKTACAVALARELYGET 66
Query: 358 LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIID 417
F + D + +D VR N + + ++A P ++FKI +D
Sbjct: 67 WHSN-----------FIELNASDERGIDVVRNN----IKNFARTA--PLGEAKFKIIFLD 109
Query: 418 ECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASR 477
E L + + + ++E + F++ K+ SR Y F + DI +
Sbjct: 110 EADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTG 169
Query: 478 LRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDD 537
+ RI E + ++ +D + + G +R A L + + K IT + Y+
Sbjct: 170 ITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPK 229
Query: 538 ELLDLLDLALSSDTSNTVIRARELM 562
E+ D+L LAL+ ++ + EL+
Sbjct: 230 EIEDMLKLALNGQFMDSRNKLDELL 254
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 72/284 (25%), Positives = 120/284 (42%), Gaps = 38/284 (13%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
SE W +K+RP F+E+V V L + G + LF+GP GTGKT+ + + A
Sbjct: 2 SELFWF--EKYRPRSFEEVVDLEEVKARLREFVKAGNLPHL-LFYGPPGTGKTTMALVLA 58
Query: 351 AAL-------NCLSL--EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS 401
L N L L D++ G+ RE RV ++
Sbjct: 59 RELYGEYWRENTLELNASDERGIGVIRE------------------------RVKEFART 94
Query: 402 AFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRS 461
A P + FK+ I+DE + + + +E +Q+ F+++ + ++ +SR
Sbjct: 95 A--PVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRC 152
Query: 462 QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK 521
+ F + +A RLR I E + A+D I S G +R A LL + + K
Sbjct: 153 AVFRFSPMPRHLMAERLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVSKV 212
Query: 522 ITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSK 565
+ + V ++L+L +LA+ D + + RELM K
Sbjct: 213 VDANAVASAAAAVRPSDVLELFNLAMGGDLAKARDKLRELMYIK 256
>sp|Q5UP47|RFCS3_MIMIV Putative replication factor C small subunit L499 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1
Length = 344
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 136/306 (44%), Gaps = 38/306 (12%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAI-SRGMVTSFYLFHGPRGTGKTS-----A 345
+ PW +K+RP D ++ ++ SL I SR + LF GP G+GKTS A
Sbjct: 16 QLPWV--EKYRPQEIDHIISNRDIILSLKKFIESRTL--PHLLFFGPSGSGKTSTIKCCA 71
Query: 346 SRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP 405
I+ +N + LE ++ R + ++VR + V S KS+
Sbjct: 72 REIYGKYINYMILE-------------LNASNERGI---ETVRTKIKNFVSS--KSSIFL 113
Query: 406 PFSSR--FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQK 463
P R FK+ I+DE + E + ++E S F +I ++DK+ + SR
Sbjct: 114 PMGVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCAS 173
Query: 464 YHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL-LGKKI 522
+ F + + D+ RL IC E + +++ A++ I S G +R A L ++L +G I
Sbjct: 174 FRFSPLNELDMHGRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGGSI 233
Query: 523 TLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARE-------LMRSKIDPMQLISQL 575
Y++ G + + D+ D+ S + + T + + + I L+ +L
Sbjct: 234 NTEDVYKISGHCMPEIVTDVFDILFSLNKNKTKSLKKSVNDIITIVTENNITIFNLLEEL 293
Query: 576 ANLIMD 581
N++M+
Sbjct: 294 KNIVME 299
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 77.4 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 60/265 (22%), Positives = 121/265 (45%), Gaps = 19/265 (7%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP D++V Q ++ L + + LF GP GTGKT+A+ L +
Sbjct: 11 AEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHL-LFAGPPGTGKTTAALALVHDLYGDN 69
Query: 358 LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIID 417
+ F + D + +D +R ++V ++ P FK+ ++D
Sbjct: 70 YTE-----------YFLELNASDERGIDVIR----NKVKEFARTVI--PGDIPFKVVLLD 112
Query: 418 ECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASR 477
E + + + ++E +++ F++ L K+ SR+ + F +K D+ +R
Sbjct: 113 EADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNR 172
Query: 478 LRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDD 537
L I E +DQ AL+ I + G +R + +L S G KI++ ++++G+
Sbjct: 173 LIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASAYG-KISVEAVFKVLGLAQPK 231
Query: 538 ELLDLLDLALSSDTSNTVIRARELM 562
E+ ++++LAL + + R L+
Sbjct: 232 EVREMINLALQGKFTQARDKLRTLL 256
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 39/280 (13%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP D+++GQ +V L + + + +F GP G GKT+ + A+
Sbjct: 4 PWV--EKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNL-MFTGPAGVGKTTTAIALVKAI 60
Query: 354 -------NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPP 406
N L L + D + +D+VR + L P
Sbjct: 61 LGEYWRQNFLELN------------------ASDARGIDTVR-------NDIKNFCRLKP 95
Query: 407 FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHF 466
+ F+I +DE + + + +E ++ F++ K+ SR + F
Sbjct: 96 VGAPFRIIFLDEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRF 155
Query: 467 PKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSL 526
IK +IA+RL+ IC E + ++ I + G +R A +L + GK++
Sbjct: 156 GPIKGEEIANRLKYICTSERFEYTDGGIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDA 215
Query: 527 AYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKI 566
YE++ ++ +L+ ALS D + AR L+R +
Sbjct: 216 VYEVVSKAKPQDVHNLITKALSGD----FMGARNLLRETM 251
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 149/365 (40%), Gaps = 51/365 (13%)
Query: 257 SDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVV 316
+ + P L+ + G A G SG E PW +K+RP DE+ Q VV
Sbjct: 8 TSISTKPPLTKDRGVAASAGSSG------ENKKAKPVPWV--EKYRPKCVDEVAFQEEVV 59
Query: 317 RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA----------LNCLSLE--DQKPC 364
L ++ G LF+GP GTGKTS I AAA L L L D++
Sbjct: 60 AVLKKSL-EGADLPNLLFYGPPGTGKTST--ILAAARELFGPELFRLRVLELNASDERGI 116
Query: 365 GLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG 424
+ RE VK + ++ GS PPF KI I+DE +
Sbjct: 117 QVVRE----------KVKNFAQLTVS-----GSRSDGKPCPPF----KIVILDEADSMTS 157
Query: 425 ETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVE 484
A + ++E S+ F +I + ++ SR K+ F + D RL I +
Sbjct: 158 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKK 217
Query: 485 EAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGIVSDDELLDL 542
E + + ++ S G +R A L + L GK+IT + ++ G++ ++
Sbjct: 218 ENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEK---- 273
Query: 543 LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKH 602
+D ++ S + + +++ ID +QL N + D++ L D +K+ +
Sbjct: 274 IDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSD---KQKSIITEK 330
Query: 603 TSEAD 607
+E D
Sbjct: 331 LAEVD 335
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 69/277 (24%), Positives = 117/277 (42%), Gaps = 19/277 (6%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP DE+VGQ +V L S + G + LF G G GKT+A+ A S
Sbjct: 10 EKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHL-LFTGSAGIGKTTAAVALAREFFGDSW 68
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
+ F + D + +D VR +++ +++ P + FKI +DE
Sbjct: 69 QTN-----------FREMNASDERGIDVVR----NQIKEFARTS--PLAGATFKILFLDE 111
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
L + A + ++E ++ F++ K+ SR Y F + +
Sbjct: 112 ADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEET 171
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDE 538
RRI E + + ALD I ++G +R A L ++L I +E+ +E
Sbjct: 172 RRIAAAEGLTVTEGALDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEE 231
Query: 539 LLDLLDLALSSDTSNTVIRARELMRSK-IDPMQLISQ 574
+ +LLDL++ EL + I P +LI+Q
Sbjct: 232 IDELLDLSIGGRFDEAEQALLELTHVRGIAPNELINQ 268
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 75.9 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 32/274 (11%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL----- 353
+K+RP FDE+V V L + G + LF+GP GTGKT+ + + A L
Sbjct: 8 EKYRPRSFDEVVDLEEVKARLREFVKAGNMPHL-LFYGPPGTGKTTMALVLARELYGEYW 66
Query: 354 --NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
N L L + D + ++ +R +RV ++A P + F
Sbjct: 67 RENTLELN------------------ASDERGINVIR----ERVKEFARTA--PVGKAPF 102
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ I+DE + + + +E +Q+ F+++ + ++ +SR + F +
Sbjct: 103 KLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPR 162
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
+A RL+ I E + + A++ I S G +R A LL + K + +
Sbjct: 163 SLMAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAA 222
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSK 565
V ++++L +LA+S D + RELM K
Sbjct: 223 IAVRPADIIELFNLAISGDFVKAREKLRELMYLK 256
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 33/247 (13%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTS-----ASRI 348
PW +K+RP DE+ G V+ ++ + G + LFHGP GTGKT+ A +I
Sbjct: 18 PWV--EKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHL-LFHGPPGTGKTTTIIAVARQI 74
Query: 349 FAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS 408
+ + LE + D + +D VR D++ + + + FS
Sbjct: 75 YGKNYRNMILELN----------------ASDERGIDVVR----DQIKTFASTRQI--FS 112
Query: 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468
S FK+ I+DE + + +E S H F ++ KL + LSR ++ F
Sbjct: 113 SGFKLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSP 172
Query: 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL---LGKKITLS 525
+K+ I RL + +E+++ A + S+G +R A +L G++I+
Sbjct: 173 LKEDAIKHRLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEE 232
Query: 526 LAYELIG 532
L Y+ +G
Sbjct: 233 LVYDCVG 239
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 73/283 (25%), Positives = 115/283 (40%), Gaps = 29/283 (10%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTS-----ASRIFAAAL 353
+K+RP E+VGQ VV L S ++ + LF G G GKT+ A +F
Sbjct: 10 EKYRPKNLAEVVGQQDVVERLRSYVATKALPHL-LFTGSAGVGKTTCAVALAREMFGDTW 68
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
N F + D + +D VR +++ ++A P + FKI
Sbjct: 69 N----------------MNFRELNASDERGIDVVR----NQIKQFARTA--PLGDATFKI 106
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
+DE L + A + ++EN ++ F++ K+ SR Y F + D
Sbjct: 107 LFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEA 166
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I+ + RI +E I D+ A I S G +R A L +++ +T Y +
Sbjct: 167 ISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSN 226
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSK-IDPMQLISQL 575
E+ DLL L D LM K I P +L++QL
Sbjct: 227 AKPQEITDLLARCLEGDFETAERMLHALMYDKGIAPNELLNQL 269
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 24/269 (8%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
+ PW +K+RP DE+VG +++ L + + + + LF G G GKT+A+ A
Sbjct: 2 QKPWV--EKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHL-LFSGSPGVGKTTAALCLAK 58
Query: 352 ALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
L + ++ F S D + +D +R D + P + F
Sbjct: 59 DLYGNTWKEN-----------FLELNSSDERGIDVIRTKVKDFARTK------PIGDAPF 101
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ +DE L + + ++E S FV+ K+ SR + F +K
Sbjct: 102 KVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKT 161
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
D+ L+ I +E+IN +++ +D I S G +R A +L + + K I ++ Y++
Sbjct: 162 EDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVA 221
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARE 560
DE+ + +LAL+ + ARE
Sbjct: 222 SKARPDEIKKMTELALNG----KFVEARE 246
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 69/285 (24%), Positives = 121/285 (42%), Gaps = 21/285 (7%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
S T W +K+RP ++VGQ+ +V L S + G + LF G G GKT+A+ A
Sbjct: 4 SHTIWI--EKYRPAKLADIVGQDDIVERLSSYVKSGNLPHL-LFTGSAGVGKTTAAVTLA 60
Query: 351 AALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSR 410
S + F + D + +D VR +++ ++ P +
Sbjct: 61 REFFGDSWQMN-----------FRELNASDERGIDVVR----NQIKEFARTR--PAGDAA 103
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
FKI +DE L + A + ++E+ ++ F++ K+ SR Y F +
Sbjct: 104 FKILFLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLG 163
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530
+ + RI E ++ A+D + + G +R A L ++L I + Y +
Sbjct: 164 PQAVKEEITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAI 223
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSK-IDPMQLISQ 574
+E+ +LL L+LS D L+R + I P +LI+Q
Sbjct: 224 TSNARPEEIGELLTLSLSGDFDGAEALLTRLLRERGIAPNELINQ 268
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 64/270 (23%), Positives = 118/270 (43%), Gaps = 25/270 (9%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP D++VGQ ++ L + + + +F GP G GKT+A+
Sbjct: 7 PWV--EKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNL-MFTGPAGVGKTTAA------- 56
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
L+L + R+ F + D + +D+VR S+ L P + F+I
Sbjct: 57 --LALAREILGEYWRQN--FLELNASDARGIDTVRT-------SIKNFCRLKPVGAPFRI 105
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
+DE + + + +E ++ F++ K+ SR + F +K
Sbjct: 106 IFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQ 165
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
I RL I +E + ++ AL+ I + G +R A LL + LG+KIT S Y+++
Sbjct: 166 IIKRLEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSR 225
Query: 534 VSDDELLDLLDLALSSDTSNTVIRARELMR 563
++ ++ L + AR+++R
Sbjct: 226 ARPKDVRKMIKTILDG----KFMEARDMLR 251
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 19/252 (7%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP +++VG + L S + R + LF GP GTGKT++S A L
Sbjct: 14 EKYRPERLEDVVGHPDITERLQSYVDRDDLPHL-LFAGPAGTGKTASSVSIAKELYGDDW 72
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
+D F + D + +D VR DR+ +S+F +++ +DE
Sbjct: 73 QDN-----------FLELNASDERGIDVVR----DRIKDFARSSF---GGHNYRVIFLDE 114
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
L + + + ++E S + F++ K+ SR + F ++ D +A+ L
Sbjct: 115 ADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHL 174
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDE 538
R I E + +D + ++G +R A L S G + Y + +E
Sbjct: 175 REIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEE 234
Query: 539 LLDLLDLALSSD 550
+ ++ AL D
Sbjct: 235 IETMVTEALGGD 246
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 19/252 (7%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP +++VG + L S + R + LF GP GTGKT++S A L
Sbjct: 14 EKYRPERLEDVVGHPDITERLQSYVDRDDLPHL-LFAGPAGTGKTASSVSIAKELYGDDW 72
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
+D F + D + +D VR DR+ +S+F +++ +DE
Sbjct: 73 QDN-----------FLELNASDERGIDVVR----DRIKDFARSSF---GGHNYRVIFLDE 114
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
L + + + ++E S + F++ K+ SR + F ++ D +A+ L
Sbjct: 115 ADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHL 174
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDE 538
R I E + +D + ++G +R A L S G + Y + +E
Sbjct: 175 REIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEE 234
Query: 539 LLDLLDLALSSD 550
+ ++ AL D
Sbjct: 235 IETMVTEALGGD 246
>sp|O26342|RFCL_METTH Replication factor C large subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcL PE=1 SV=1
Length = 479
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 122/294 (41%), Gaps = 47/294 (15%)
Query: 296 SLSQKFRPNFFDELVG-QNVV--VRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
S ++K+RP FDE+VG Q V+ ++ + A G L GP GTGKT+ + I
Sbjct: 2 SWTEKYRPGSFDEVVGNQKVIAEIKEWIKAWKAGKPQKPLLLVGPPGTGKTTLAHIIGKE 61
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVG--SLMKSAFLPP---- 406
+ D++ +N SDR +LM+SA
Sbjct: 62 FS------------------------------DTLELNASDRRSQDALMRSAGEASATRS 91
Query: 407 -FSSRFKIFIIDECQLLHG---ETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462
F+ K+ I+DE +HG +N + S+H + + K +S R +
Sbjct: 92 LFNHDLKLIILDEVDGIHGNEDRGGVQAINRIIKESRHPMVLTANDPYSKRLQSIKPRCR 151
Query: 463 KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKI 522
+ K+ IA+ LRRIC E I L +A +S G +R A L+ ++ ++I
Sbjct: 152 VLNLRKVHTSSIAAALRRICRAEGIECPDDVLRELAKRSRGDLRSAINDLEAMAEGEERI 211
Query: 523 TLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA 576
EL+ + D +L D + S V + RE MR DP ++ +A
Sbjct: 212 ----GEELLKMGEKDATSNLFDAVRAVLKSRDVSKVREAMRVDDDPTLVLEFIA 261
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 121/301 (40%), Gaps = 35/301 (11%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
++ PW +K+RP DE+ Q+ V L + + LF+GP GTGKTS
Sbjct: 23 AQQPWV--EKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHM-LFYGPPGTGKTSTILALT 79
Query: 351 AALNC----------LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK 400
L L+ D++ + RE K + R+ S ++
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVRE------------KVKNFARLTVSKPSKHDLE 127
Query: 401 SAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSR 460
+ PP+ KI I+DE + + + + ++E S F +I + ++ SR
Sbjct: 128 NYPCPPY----KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASR 183
Query: 461 SQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-- 518
K+ F + + RLR I +E + D L+ I S G +R LL S
Sbjct: 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQ 243
Query: 519 ----GKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQ 574
GK IT + EL G+V D L+++++ S D M+S +++Q
Sbjct: 244 YLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQ 303
Query: 575 L 575
L
Sbjct: 304 L 304
>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1
Length = 364
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 146/357 (40%), Gaps = 50/357 (14%)
Query: 265 LSGEIGETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAIS 324
L+ + G A G SG E PW +K+RP DE+ Q+ VV L ++
Sbjct: 16 LTKDRGTPATAGSSG------ETKKVKPVPWV--EKYRPKCVDEVAFQDEVVAVLRKSL- 66
Query: 325 RGMVTSFYLFHGPRGTGKTSASRIFAAA----------LNCLSLE--DQKPCGLCRECAL 372
G LF+GP GTGKTS I AAA L L L D++ + RE
Sbjct: 67 EGADLPNLLFYGPPGTGKTST--ILAAARELFGPELFRLRVLELNASDERGIQVVRE--- 121
Query: 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLN 432
VK + ++ GS PPF KI I+DE + A +
Sbjct: 122 -------KVKNFAQLTVS-----GSRSDGKPCPPF----KIVILDEADSMTSAAQAALRR 165
Query: 433 SLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQA 492
++E S+ F +I + ++ SR K+ F + D RL I +E +
Sbjct: 166 TMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNE 225
Query: 493 ALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGIVSDDELLDLLDLALSSD 550
+ ++ S G +R A L + L GK+++ + ++ G++ +D ++
Sbjct: 226 EIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIP----AATIDGIFTAC 281
Query: 551 TSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEAD 607
S + + ++++ ID +QL N + D + E+ S+ K+ + +E D
Sbjct: 282 HSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIEN--ENLSDKHKSIITEKLAEVD 336
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 34/267 (12%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
SE W +K+RP FDE+V V ++ L RG LF+GP GTGKT+ + + A
Sbjct: 2 SELFWF--EKYRPRSFDEVVDLEEV-KARLREFVRGGNMPHLLFYGPPGTGKTTMALVLA 58
Query: 351 AAL-------NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF 403
L N L L + D + ++ +R +RV ++A
Sbjct: 59 RELYGEYWRENTLELN------------------ASDERGINVIR----ERVKEFARTA- 95
Query: 404 LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQK 463
P + FK+ I+DE + + + +E +Q+ F+++ + + SR+
Sbjct: 96 -PVGKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVM 154
Query: 464 YHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKIT 523
F + + +RLR I E + AL+ I + G +R A L + GK+IT
Sbjct: 155 IRFSPLPKEAVFARLRYIADNEGVKISDDALEAIYEFTQGDMRRAINALQIAATTGKEIT 214
Query: 524 LSLAYELIGIVSDDELLDLLDLALSSD 550
+ +G+VS L + L+ A +
Sbjct: 215 EETVAKALGMVSPRLLRETLNDAFRGN 241
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 120/290 (41%), Gaps = 37/290 (12%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
+ PW +K+RP E+VG + +++ L + + + + LF G G GKT+A+ A
Sbjct: 2 QKPWV--EKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHL-LFSGSPGVGKTTAALALAK 58
Query: 352 ALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
L + + F S D + +D +R D + P + F
Sbjct: 59 DLYGDTWREN-----------FLELNSSDERGIDVIRTKVKDFARTK------PIGDAPF 101
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ +DE L + + ++E S F++ K+ SR + F +K
Sbjct: 102 KVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKT 161
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
D+ L+ I +E +N ++ +D I S G +R A +L + + +IT + Y++
Sbjct: 162 EDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVA 221
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD 581
DE+ + LAL+ + ARE QL NL++D
Sbjct: 222 SKARPDEIKKMTQLALNG----KFVEARE-------------QLYNLMID 254
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 128/290 (44%), Gaps = 17/290 (5%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW + +RP D++ Q V+ L + + LF+G GTGKTS +
Sbjct: 20 PWV--ELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHM-LFYGSPGTGKTST-------I 69
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEV-DSVRINRSDRVGSLMKSAFLPPFSSRFK 412
LS E P + ++ R + + + V+ V + + PPF K
Sbjct: 70 LALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPF----K 125
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
I I+DE + + A + ++E+ ++ F +I + ++ SR KY F + +
Sbjct: 126 IIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNE 185
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYEL 530
++ RL I ++A++ + ++ + S G +R A L + L G IT+S EL
Sbjct: 186 NMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEEL 245
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIM 580
G V + + LLD A + + SN +R++ ++SQL ++++
Sbjct: 246 AGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLL 295
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 68/274 (24%), Positives = 114/274 (41%), Gaps = 34/274 (12%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
SE W +K+RP FDE+V V L + G + LF+GP GTGKT+ + + A
Sbjct: 2 SELFWF--EKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHL-LFYGPPGTGKTTMALVLA 58
Query: 351 AAL-------NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF 403
L N L L + D + ++ +R +RV ++A
Sbjct: 59 RELYGEYWRENTLELN------------------ASDERGINVIR----ERVKEFARTA- 95
Query: 404 LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQK 463
P + FK+ I+DE + + + +E +Q+ F+++ + + SR
Sbjct: 96 -PVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVM 154
Query: 464 YHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKIT 523
F + + SRLR I E + AL+ I + G +R A L + K+IT
Sbjct: 155 IRFNPLPKEAVISRLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQIAAATEKEIT 214
Query: 524 LSLAYELIGIVSDDELLDLLDLALSSDTSNTVIR 557
+ +G+VS L + L AL + S + +
Sbjct: 215 EDVVARALGMVSPRLLRETLQEALKGNFSKAMTQ 248
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 119/272 (43%), Gaps = 25/272 (9%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
+TPW +K+RP D++VGQ +V L + + + +F G G GKT+ + A
Sbjct: 2 KTPWV--EKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNI-MFTGFAGVGKTTCALALAK 58
Query: 352 ALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
+L + F + D + +D+VR + + S K L + F
Sbjct: 59 SLLGEYWQQN-----------FLELNASDARGIDTVR----NEIKSFCK---LKAVGAPF 100
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
+I +DE + + + +E ++ F++ K+ SR + F IK
Sbjct: 101 RIIFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKA 160
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
+I RL+ I EE I +Q+AL+ I + G +R + +L + +T Y++I
Sbjct: 161 ANIIKRLKYIASEEGIEAEQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVI 220
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMR 563
++ +++ AL+ D + AR+L+R
Sbjct: 221 SRAKPKDVRKIINKALNHD----FMEARDLLR 248
>sp|P38629|RFC3_YEAST Replication factor C subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC3 PE=1 SV=1
Length = 340
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 24/215 (11%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ GQN V+ ++ + G + LF+GP GTGKTS
Sbjct: 14 PWV--EKYRPETLDEVYGQNEVITTVRKFVDEGKLPHL-LFYGPPGTGKTSTI------- 63
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK--SAFLPPFSSRF 411
L RE ++ S V E+++ D V + +K ++ FS F
Sbjct: 64 ----------VALARE--IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGF 111
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ I+DE + + +E +++ F ++ KL + LSR ++ F +
Sbjct: 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQ 171
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIR 506
I R+ + V E + A + SNG +R
Sbjct: 172 EAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 10/261 (3%)
Query: 288 STYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASR 347
+T S PW +K+RP+ DELV +V++L I + LF+GP GTGKT+
Sbjct: 24 TTASNLPWV--EKYRPSKLDELVAHEQIVKTLTKFIENRTLPHL-LFYGPPGTGKTTT-- 78
Query: 348 IFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPF 407
+ AAA S P + ++ R + V + +N + G S
Sbjct: 79 VLAAARQMYS-----PTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTG 133
Query: 408 SSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFP 467
+ FK+ I+DE + + + +E + +V F +I L + + SR ++ F
Sbjct: 134 TVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFA 193
Query: 468 KIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527
+ I RL I E + D + S G +R L ++ ++ +
Sbjct: 194 PLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTV 253
Query: 528 YELIGIVSDDELLDLLDLALS 548
Y+ IG + E+ +++ L+
Sbjct: 254 YQCIGQPTPKEMKEVVKTLLN 274
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 130/294 (44%), Gaps = 24/294 (8%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW K+RP D++ Q V+ +L +++ G + LF+GP GTGKTS I A A+
Sbjct: 11 PWV--AKYRPKTVDDVSYQEDVISALKKSLNTGNLPHL-LFYGPPGTGKTST--ILAIAM 65
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS--SRF 411
+ E K R L +S D + ++ VR + G + + + F
Sbjct: 66 DIYGPELMKQ----RVLELNAS----DERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATF 117
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ I+DE + + A + ++E S+ F ++ + ++ SR K+ F +
Sbjct: 118 KLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDT 177
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYEL 530
RL+ I +E I +++ I SNG +R A L KI+ + Y +
Sbjct: 178 VATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNI 237
Query: 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKID---PM-QLISQLANLIM 580
G + + L+D N+ R + +++S I P+ Q+ISQL + ++
Sbjct: 238 AGSLPPQLIKQLVDCC----KKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVL 287
>sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4
PE=1 SV=1
Length = 334
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 98/235 (41%), Gaps = 36/235 (15%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP D++ Q+ VV L A+ +G LF+GP GTGKTSA+ F
Sbjct: 18 TEKYRPKTLDDIAYQDEVVTMLKGAL-QGRDLPHLLFYGPPGTGKTSAALAF-------- 68
Query: 358 LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSS-------- 409
CR+ LF D + +D +N SD G + + FS
Sbjct: 69 ---------CRQ--LFPKNIFHD-RVLD---LNASDERGIAVVRQKIQSFSKSSLGHSHR 113
Query: 410 ----RFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYH 465
+ KI I+DE + E A + +E+ S+ F++I + +L +SR K+
Sbjct: 114 EDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFR 173
Query: 466 FPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK 520
F + RLR IC E L + S G +R A L L+ + K
Sbjct: 174 FKSLPAEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILK 228
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 118/290 (40%), Gaps = 37/290 (12%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
+ PW +K+RP E+VG + +++ L + + + + LF G G GKT+A+ A
Sbjct: 2 QKPWV--EKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHL-LFSGSPGVGKTTAALALAK 58
Query: 352 ALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
L + + F S D + +D +R D + P + F
Sbjct: 59 DLYGETWREN-----------FLELNSSDERGIDVIRTKVKDFARTK------PIGDAPF 101
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ +DE L + + ++E S FV+ K+ SR + F +K
Sbjct: 102 KVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKT 161
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
D+ L+ I +E + ++ +D I S G +R A +L + + +T + Y++
Sbjct: 162 EDLVENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVA 221
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD 581
DE+ + LAL + + +RE QL NL++D
Sbjct: 222 SKARPDEIKKMTQLAL----NGKFVESRE-------------QLYNLMID 254
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 118/290 (40%), Gaps = 37/290 (12%)
Query: 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAA 351
+ PW +K+RP E+VG + +++ L + + + + LF G G GKT+A+ A
Sbjct: 2 QKPWV--EKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHL-LFSGSPGVGKTTAALALAK 58
Query: 352 ALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411
L + + F S D + +D +R D + P + F
Sbjct: 59 DLYGDTWREN-----------FLELNSSDERGIDVIRTKVKDFARTK------PIGDAPF 101
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
K+ +DE L + + ++E S F++ K+ SR + F +K
Sbjct: 102 KVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKT 161
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELI 531
D+ L+ I +E + ++ +D I S G +R A +L + + +T + Y++
Sbjct: 162 EDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVA 221
Query: 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMD 581
DE+ + LAL + + ARE QL NL++D
Sbjct: 222 SKARPDEIKKMTQLAL----NGKFVEARE-------------QLYNLMID 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,465,273
Number of Sequences: 539616
Number of extensions: 14597422
Number of successful extensions: 41693
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 41335
Number of HSP's gapped (non-prelim): 398
length of query: 1018
length of database: 191,569,459
effective HSP length: 128
effective length of query: 890
effective length of database: 122,498,611
effective search space: 109023763790
effective search space used: 109023763790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)