Query 001748
Match_columns 1018
No_of_seqs 573 out of 2985
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14948 DNA polymerase III su 100.0 4.9E-60 1.1E-64 566.6 51.2 483 293-782 2-514 (620)
2 PRK14952 DNA polymerase III su 100.0 2E-58 4.4E-63 547.3 49.1 481 296-782 2-512 (584)
3 PRK05563 DNA polymerase III su 100.0 1.7E-57 3.7E-62 540.7 48.3 483 293-782 2-514 (559)
4 PRK14965 DNA polymerase III su 100.0 1.1E-56 2.3E-61 535.9 46.8 485 294-782 3-524 (576)
5 COG2812 DnaX DNA polymerase II 100.0 1.2E-57 2.7E-62 528.9 32.6 355 293-647 2-362 (515)
6 PRK14958 DNA polymerase III su 100.0 1.3E-55 2.7E-60 518.9 45.8 452 293-782 2-455 (509)
7 PRK07764 DNA polymerase III su 100.0 1E-52 2.2E-57 514.6 50.8 350 296-645 4-365 (824)
8 PRK14951 DNA polymerase III su 100.0 1.3E-52 2.8E-57 499.5 48.1 355 293-647 2-366 (618)
9 PRK09111 DNA polymerase III su 100.0 3E-52 6.5E-57 496.9 49.3 482 289-780 6-529 (598)
10 PRK14956 DNA polymerase III su 100.0 1.8E-53 3.9E-58 491.1 36.8 355 292-646 3-370 (484)
11 PRK14964 DNA polymerase III su 100.0 2.8E-52 6.1E-57 485.4 47.1 447 296-779 2-457 (491)
12 PRK14950 DNA polymerase III su 100.0 5.5E-52 1.2E-56 497.0 51.0 485 294-781 3-544 (585)
13 PRK14963 DNA polymerase III su 100.0 1.2E-51 2.5E-56 484.6 47.0 469 296-782 3-498 (504)
14 PRK06645 DNA polymerase III su 100.0 1.9E-51 4.1E-56 481.5 47.6 449 292-782 6-469 (507)
15 PRK14969 DNA polymerase III su 100.0 1.7E-51 3.8E-56 486.3 46.8 470 293-782 2-476 (527)
16 PRK14957 DNA polymerase III su 100.0 2.9E-51 6.2E-56 482.7 46.9 483 293-782 2-495 (546)
17 PRK07994 DNA polymerase III su 100.0 3.8E-51 8.2E-56 487.8 48.2 355 293-647 2-361 (647)
18 PRK14954 DNA polymerase III su 100.0 4.4E-51 9.5E-56 487.6 48.5 354 293-646 2-374 (620)
19 PRK08691 DNA polymerase III su 100.0 7.9E-51 1.7E-55 483.2 45.8 354 293-646 2-359 (709)
20 PRK07003 DNA polymerase III su 100.0 8E-52 1.7E-56 491.2 37.2 355 293-647 2-360 (830)
21 PRK14960 DNA polymerase III su 100.0 1.2E-51 2.7E-56 486.1 36.8 353 294-646 2-359 (702)
22 PRK12323 DNA polymerase III su 100.0 1E-51 2.2E-56 485.8 34.7 354 293-646 2-364 (700)
23 PRK14971 DNA polymerase III su 100.0 1.9E-49 4.1E-54 475.4 51.5 355 292-646 2-363 (614)
24 PRK14961 DNA polymerase III su 100.0 1.1E-50 2.3E-55 460.9 38.4 353 293-645 2-360 (363)
25 PRK14949 DNA polymerase III su 100.0 6.7E-51 1.5E-55 491.0 37.3 355 293-647 2-359 (944)
26 PRK06647 DNA polymerase III su 100.0 1.1E-50 2.3E-55 481.6 37.4 354 294-647 3-360 (563)
27 PRK14953 DNA polymerase III su 100.0 6.3E-50 1.4E-54 468.4 42.1 352 293-647 2-356 (486)
28 PRK14959 DNA polymerase III su 100.0 1.6E-49 3.6E-54 470.3 45.1 354 293-646 2-363 (624)
29 PRK14955 DNA polymerase III su 100.0 2.4E-50 5.1E-55 463.0 35.9 353 294-646 3-374 (397)
30 TIGR02397 dnaX_nterm DNA polym 100.0 2.4E-48 5.1E-53 437.1 38.2 350 294-643 1-355 (355)
31 PRK14962 DNA polymerase III su 100.0 9E-48 2E-52 448.6 44.2 448 295-782 2-452 (472)
32 PRK07133 DNA polymerase III su 100.0 2.1E-48 4.6E-53 466.4 37.3 350 292-647 3-357 (725)
33 PRK08451 DNA polymerase III su 100.0 3.7E-47 8E-52 446.0 46.6 448 295-778 2-452 (535)
34 PRK06305 DNA polymerase III su 100.0 7.2E-48 1.6E-52 448.2 36.3 346 293-646 3-350 (451)
35 PRK05896 DNA polymerase III su 100.0 9.1E-47 2E-51 445.1 33.7 353 294-646 3-364 (605)
36 KOG0989 Replication factor C, 100.0 8.5E-46 1.8E-50 398.8 30.2 321 293-626 22-345 (346)
37 PRK14970 DNA polymerase III su 100.0 2.4E-43 5.1E-48 400.5 39.5 343 292-646 2-350 (367)
38 PLN03025 replication factor C 100.0 2E-38 4.2E-43 354.5 34.8 308 296-645 2-312 (319)
39 PRK07940 DNA polymerase III su 100.0 2.2E-36 4.9E-41 346.1 34.2 334 305-644 3-391 (394)
40 PRK00440 rfc replication facto 100.0 9.1E-36 2E-40 329.5 36.8 311 293-645 3-316 (319)
41 PRK07993 DNA polymerase III su 100.0 4.7E-36 1E-40 337.2 31.4 308 312-646 7-323 (334)
42 PRK05564 DNA polymerase III su 100.0 1.6E-35 3.4E-40 330.2 33.6 306 304-644 1-312 (313)
43 PRK08058 DNA polymerase III su 100.0 6.1E-36 1.3E-40 336.1 30.4 318 305-644 3-328 (329)
44 PRK12402 replication factor C 100.0 7.6E-35 1.6E-39 324.8 35.5 323 295-642 3-336 (337)
45 PRK05707 DNA polymerase III su 100.0 4.3E-35 9.3E-40 328.7 31.4 304 319-645 12-324 (328)
46 PRK06871 DNA polymerase III su 100.0 1.1E-34 2.5E-39 323.9 32.4 306 312-643 7-320 (325)
47 PRK06964 DNA polymerase III su 100.0 4.2E-33 9.2E-38 313.3 32.9 302 312-644 6-339 (342)
48 PRK07399 DNA polymerase III su 100.0 7.9E-33 1.7E-37 308.8 29.0 286 305-645 2-313 (314)
49 PRK06090 DNA polymerase III su 100.0 9.3E-33 2E-37 307.9 29.3 302 312-643 8-314 (319)
50 PRK07471 DNA polymerase III su 100.0 2.5E-32 5.5E-37 310.2 31.2 325 301-645 13-363 (365)
51 KOG0991 Replication factor C, 100.0 2.2E-32 4.8E-37 284.8 25.4 312 292-646 12-327 (333)
52 PRK08769 DNA polymerase III su 100.0 7.4E-31 1.6E-35 292.9 26.9 293 312-646 9-310 (319)
53 PRK08699 DNA polymerase III su 100.0 2.9E-30 6.2E-35 289.5 30.5 302 312-645 6-320 (325)
54 PHA02544 44 clamp loader, smal 100.0 1.2E-29 2.6E-34 282.0 34.6 296 292-643 6-310 (316)
55 PRK09112 DNA polymerase III su 100.0 5.1E-30 1.1E-34 290.1 30.8 216 297-514 13-243 (351)
56 COG2256 MGS1 ATPase related to 100.0 2.1E-29 4.5E-34 280.7 29.1 256 295-578 12-292 (436)
57 PRK07276 DNA polymerase III su 100.0 2.8E-29 6E-34 276.5 26.5 281 311-640 6-290 (290)
58 PRK05917 DNA polymerase III su 100.0 1.4E-28 3.1E-33 270.2 26.2 268 313-645 3-276 (290)
59 PRK04195 replication factor C 100.0 1.8E-27 3.9E-32 280.2 29.6 294 296-642 3-310 (482)
60 PRK04132 replication factor C 100.0 3.2E-27 6.9E-32 289.0 31.8 273 332-645 567-844 (846)
61 PRK13342 recombination factor 100.0 3.5E-27 7.5E-32 272.9 27.3 255 296-578 1-273 (413)
62 PF13177 DNA_pol3_delta2: DNA 100.0 8.5E-28 1.9E-32 244.6 16.2 159 311-470 1-162 (162)
63 PRK07132 DNA polymerase III su 100.0 1.1E-25 2.3E-30 249.7 33.0 290 313-644 2-296 (299)
64 TIGR00678 holB DNA polymerase 100.0 2.2E-27 4.8E-32 245.6 17.9 186 317-508 2-188 (188)
65 COG0470 HolB ATPase involved i 99.9 5.5E-26 1.2E-30 251.6 26.0 201 307-518 1-206 (325)
66 PRK13341 recombination factor 99.9 4.4E-26 9.5E-31 277.7 26.8 258 293-578 14-301 (725)
67 PRK07452 DNA polymerase III su 99.9 1.9E-24 4.1E-29 242.0 32.8 294 330-645 2-324 (326)
68 KOG2028 ATPase related to the 99.9 8.9E-26 1.9E-30 247.1 19.9 263 291-578 122-422 (554)
69 PRK05818 DNA polymerase III su 99.9 2.1E-25 4.5E-30 241.0 21.3 210 327-547 5-227 (261)
70 PRK07914 hypothetical protein; 99.9 5.9E-24 1.3E-28 238.2 33.0 297 327-645 3-316 (320)
71 KOG2035 Replication factor C, 99.9 2.5E-24 5.4E-29 229.8 28.3 322 296-645 2-342 (351)
72 PRK05629 hypothetical protein; 99.9 8.3E-24 1.8E-28 236.8 33.7 296 327-645 4-316 (318)
73 KOG0990 Replication factor C, 99.9 4.4E-25 9.6E-30 240.0 21.4 315 288-643 22-348 (360)
74 PRK05574 holA DNA polymerase I 99.9 5.7E-23 1.2E-27 230.2 34.9 305 317-645 6-339 (340)
75 PRK06585 holA DNA polymerase I 99.9 7.2E-23 1.6E-27 230.9 35.4 303 319-644 9-336 (343)
76 PRK05907 hypothetical protein; 99.9 2.2E-23 4.7E-28 232.7 30.0 291 316-645 7-311 (311)
77 PRK08487 DNA polymerase III su 99.9 2.1E-22 4.6E-27 226.5 34.7 300 317-644 4-324 (328)
78 TIGR01128 holA DNA polymerase 99.9 2.5E-22 5.4E-27 221.3 29.6 250 394-643 30-302 (302)
79 PF05496 RuvB_N: Holliday junc 99.9 2.1E-23 4.6E-28 220.4 15.7 195 293-517 10-227 (233)
80 PRK00080 ruvB Holliday junctio 99.9 1E-20 2.2E-25 212.7 24.3 209 295-533 13-249 (328)
81 COG1466 HolA DNA polymerase II 99.9 7.2E-19 1.6E-23 198.5 33.7 306 317-645 4-332 (334)
82 TIGR02902 spore_lonB ATP-depen 99.8 2.5E-20 5.5E-25 221.9 17.4 227 292-534 50-332 (531)
83 COG2255 RuvB Holliday junction 99.8 1.4E-19 3E-24 194.9 20.1 206 297-532 16-249 (332)
84 TIGR00635 ruvB Holliday juncti 99.8 2.1E-19 4.6E-24 199.1 21.2 200 304-533 1-228 (305)
85 PRK06581 DNA polymerase III su 99.8 8.9E-19 1.9E-23 186.5 18.6 182 316-515 2-191 (263)
86 COG1223 Predicted ATPase (AAA+ 99.8 1.2E-17 2.5E-22 177.6 16.5 203 300-532 114-353 (368)
87 KOG1969 DNA replication checkp 99.7 4.1E-17 9E-22 192.1 20.4 231 294-548 258-553 (877)
88 PRK08903 DnaA regulatory inact 99.7 8.1E-17 1.7E-21 171.5 20.5 199 302-533 13-225 (227)
89 PRK08084 DNA replication initi 99.7 1.2E-16 2.6E-21 172.1 20.3 198 305-532 20-234 (235)
90 PRK12422 chromosomal replicati 99.7 1.6E-16 3.5E-21 185.6 20.4 281 305-620 109-423 (445)
91 PRK00149 dnaA chromosomal repl 99.7 2E-16 4.3E-21 185.5 20.9 218 296-534 114-349 (450)
92 PRK08727 hypothetical protein; 99.7 3.8E-16 8.2E-21 168.1 21.1 199 305-533 17-230 (233)
93 TIGR00602 rad24 checkpoint pro 99.7 1.8E-16 3.9E-21 190.9 19.7 220 292-519 69-331 (637)
94 TIGR02881 spore_V_K stage V sp 99.7 4.2E-16 9E-21 170.1 19.9 188 305-516 4-235 (261)
95 COG0593 DnaA ATPase involved i 99.7 4.1E-16 8.8E-21 178.5 20.4 289 295-622 78-393 (408)
96 PRK06893 DNA replication initi 99.7 4.8E-16 1E-20 166.8 19.8 200 303-532 12-228 (229)
97 PRK14088 dnaA chromosomal repl 99.7 3.9E-16 8.4E-21 182.5 20.5 218 296-533 97-331 (440)
98 PRK14086 dnaA chromosomal repl 99.7 4.8E-16 1E-20 185.4 21.1 234 296-550 280-540 (617)
99 PRK14087 dnaA chromosomal repl 99.7 8E-16 1.7E-20 180.2 20.8 231 304-550 112-372 (450)
100 TIGR00362 DnaA chromosomal rep 99.7 6.5E-16 1.4E-20 178.7 18.2 217 296-533 102-336 (405)
101 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.1E-15 4.6E-20 159.6 19.6 199 303-531 11-225 (226)
102 COG1222 RPT1 ATP-dependent 26S 99.7 9.1E-16 2E-20 170.0 17.1 205 304-532 148-390 (406)
103 TIGR02928 orc1/cdc6 family rep 99.7 5.6E-15 1.2E-19 167.6 23.7 231 293-534 4-274 (365)
104 PRK05642 DNA replication initi 99.7 3.9E-15 8.4E-20 160.4 20.5 199 305-532 17-233 (234)
105 PRK06620 hypothetical protein; 99.7 3.5E-15 7.7E-20 158.8 19.9 191 295-531 7-213 (214)
106 CHL00181 cbbX CbbX; Provisiona 99.7 3.7E-15 8E-20 165.3 20.0 188 306-517 22-252 (287)
107 TIGR02903 spore_lon_C ATP-depe 99.6 6.4E-15 1.4E-19 178.6 22.5 236 293-534 140-430 (615)
108 PTZ00112 origin recognition co 99.6 1.2E-14 2.5E-19 175.5 23.4 229 295-532 746-1004(1164)
109 KOG0734 AAA+-type ATPase conta 99.6 4.1E-15 8.8E-20 170.2 15.2 202 303-529 300-536 (752)
110 KOG0730 AAA+-type ATPase [Post 99.6 1.2E-14 2.5E-19 171.0 19.0 194 301-518 428-651 (693)
111 TIGR02880 cbbX_cfxQ probable R 99.6 1.5E-14 3.3E-19 160.2 18.9 194 307-518 22-252 (284)
112 PF00308 Bac_DnaA: Bacterial d 99.6 9.8E-15 2.1E-19 155.9 15.0 196 305-518 6-215 (219)
113 PRK00411 cdc6 cell division co 99.6 2E-13 4.4E-18 156.6 26.6 234 292-534 18-282 (394)
114 PRK09087 hypothetical protein; 99.6 1.8E-14 3.8E-19 154.7 16.4 198 293-534 10-222 (226)
115 TIGR01241 FtsH_fam ATP-depende 99.6 3E-14 6.6E-19 169.0 19.7 208 303-533 51-294 (495)
116 PF03215 Rad17: Rad17 cell cyc 99.6 3.7E-14 8.1E-19 168.2 19.4 222 292-518 4-270 (519)
117 TIGR02639 ClpA ATP-dependent C 99.6 2.6E-14 5.6E-19 176.8 18.7 220 293-533 168-428 (731)
118 CHL00195 ycf46 Ycf46; Provisio 99.6 1.2E-13 2.5E-18 163.1 22.1 209 304-534 225-463 (489)
119 PRK08485 DNA polymerase III su 99.5 1.6E-14 3.5E-19 150.5 10.5 125 389-517 36-173 (206)
120 TIGR03345 VI_ClpV1 type VI sec 99.5 1.2E-13 2.5E-18 172.9 19.5 207 293-517 173-408 (852)
121 CHL00176 ftsH cell division pr 99.5 2.5E-13 5.3E-18 164.9 20.4 206 304-532 180-421 (638)
122 PRK03992 proteasome-activating 99.5 2.5E-13 5.4E-18 156.8 18.4 207 304-533 128-371 (389)
123 PTZ00454 26S protease regulato 99.5 2.5E-13 5.5E-18 156.9 18.2 205 304-531 142-383 (398)
124 TIGR01243 CDC48 AAA family ATP 99.5 2.9E-13 6.3E-18 167.7 18.2 191 303-516 449-669 (733)
125 KOG0733 Nuclear AAA ATPase (VC 99.5 3.1E-13 6.8E-18 157.1 16.7 184 305-512 188-403 (802)
126 PTZ00361 26 proteosome regulat 99.5 4.3E-13 9.3E-18 156.3 17.4 213 298-533 174-423 (438)
127 TIGR03689 pup_AAA proteasome A 99.5 7.1E-13 1.5E-17 156.6 18.4 186 297-491 172-386 (512)
128 COG1224 TIP49 DNA helicase TIP 99.5 1.8E-12 3.9E-17 143.7 19.6 120 411-531 292-429 (450)
129 PLN00020 ribulose bisphosphate 99.5 1E-12 2.2E-17 148.1 16.2 188 302-510 110-337 (413)
130 TIGR01242 26Sp45 26S proteasom 99.5 1.1E-12 2.5E-17 149.8 16.9 208 302-532 117-361 (364)
131 TIGR00763 lon ATP-dependent pr 99.4 9.4E-13 2E-17 164.0 17.1 193 305-515 317-550 (775)
132 KOG1970 Checkpoint RAD17-RFC c 99.4 4.4E-12 9.6E-17 146.8 19.6 221 292-517 67-321 (634)
133 PF06068 TIP49: TIP49 C-termin 99.4 3.3E-12 7.1E-17 143.7 17.5 105 411-516 279-396 (398)
134 KOG0733 Nuclear AAA ATPase (VC 99.4 1.7E-12 3.6E-17 151.2 15.5 177 304-502 508-713 (802)
135 KOG0731 AAA+-type ATPase conta 99.4 3.2E-12 7E-17 154.5 18.4 205 304-531 308-550 (774)
136 KOG0738 AAA+-type ATPase [Post 99.4 3.7E-12 7.9E-17 142.4 17.2 190 304-517 209-430 (491)
137 TIGR03015 pepcterm_ATPase puta 99.4 1.2E-11 2.7E-16 134.3 19.2 228 295-534 11-266 (269)
138 COG1474 CDC6 Cdc6-related prot 99.4 4.3E-11 9.3E-16 137.1 24.4 238 295-541 8-272 (366)
139 CHL00095 clpC Clp protease ATP 99.4 1.1E-11 2.3E-16 155.5 19.6 199 307-515 509-777 (821)
140 COG0464 SpoVK ATPases of the A 99.4 1.3E-11 2.9E-16 146.4 18.7 207 304-533 239-482 (494)
141 PF12169 DNA_pol3_gamma3: DNA 99.4 7.9E-12 1.7E-16 124.3 14.0 126 522-647 1-132 (143)
142 KOG0736 Peroxisome assembly fa 99.4 1.3E-11 2.9E-16 146.9 17.7 183 300-505 665-879 (953)
143 TIGR02639 ClpA ATP-dependent C 99.3 1.2E-11 2.5E-16 153.5 17.5 196 307-515 454-707 (731)
144 PRK13407 bchI magnesium chelat 99.3 4.8E-11 1E-15 135.1 20.1 226 302-531 3-303 (334)
145 TIGR02442 Cob-chelat-sub cobal 99.3 3.3E-11 7.1E-16 147.2 20.0 223 306-532 3-302 (633)
146 TIGR03346 chaperone_ClpB ATP-d 99.3 9.9E-12 2.1E-16 156.3 15.8 205 293-517 159-394 (852)
147 TIGR03345 VI_ClpV1 type VI sec 99.3 1.9E-11 4.2E-16 153.2 18.1 199 307-515 566-826 (852)
148 PRK11034 clpA ATP-dependent Cl 99.3 4.3E-11 9.3E-16 147.9 20.0 222 295-533 174-432 (758)
149 CHL00206 ycf2 Ycf2; Provisiona 99.3 2E-11 4.4E-16 156.6 17.3 193 327-532 1628-1875(2281)
150 COG0465 HflB ATP-dependent Zn 99.3 1.1E-11 2.4E-16 147.6 13.9 204 304-531 147-387 (596)
151 TIGR02030 BchI-ChlI magnesium 99.3 9.7E-11 2.1E-15 132.8 20.9 225 306-532 3-307 (337)
152 PRK11034 clpA ATP-dependent Cl 99.3 2.7E-11 5.9E-16 149.6 17.0 194 308-515 459-711 (758)
153 PRK10865 protein disaggregatio 99.3 1.5E-11 3.3E-16 154.4 14.3 206 293-518 164-400 (857)
154 KOG1942 DNA helicase, TBP-inte 99.3 1E-10 2.3E-15 126.7 18.3 120 411-531 297-435 (456)
155 PRK10787 DNA-binding ATP-depen 99.3 6.9E-11 1.5E-15 146.9 19.1 210 306-534 320-582 (784)
156 KOG0737 AAA+-type ATPase [Post 99.3 3.5E-11 7.5E-16 134.7 14.6 191 304-517 89-309 (386)
157 KOG0743 AAA+-type ATPase [Post 99.3 7.2E-11 1.6E-15 135.2 17.5 152 301-482 195-383 (457)
158 PF00004 AAA: ATPase family as 99.3 1.7E-11 3.8E-16 117.8 10.5 115 332-467 1-131 (132)
159 PRK10733 hflB ATP-dependent me 99.3 7.9E-11 1.7E-15 144.1 18.7 208 301-531 146-389 (644)
160 CHL00081 chlI Mg-protoporyphyr 99.3 2E-10 4.4E-15 130.5 20.4 227 305-532 15-320 (350)
161 PF05673 DUF815: Protein of un 99.3 2E-10 4.3E-15 123.9 19.0 189 301-516 21-246 (249)
162 KOG0742 AAA+-type ATPase [Post 99.3 1.5E-10 3.4E-15 129.9 18.7 158 306-485 354-531 (630)
163 PRK10865 protein disaggregatio 99.3 7E-11 1.5E-15 148.5 18.0 201 305-515 566-824 (857)
164 CHL00095 clpC Clp protease ATP 99.3 4.6E-11 1E-15 149.8 16.3 202 295-517 167-399 (821)
165 PRK05342 clpX ATP-dependent pr 99.3 8.5E-11 1.8E-15 136.6 16.9 191 306-515 69-374 (412)
166 TIGR03346 chaperone_ClpB ATP-d 99.3 1.3E-10 2.8E-15 146.3 19.8 200 307-516 565-822 (852)
167 KOG0652 26S proteasome regulat 99.2 5.9E-11 1.3E-15 126.9 13.0 177 304-503 168-375 (424)
168 KOG0727 26S proteasome regulat 99.2 1.2E-10 2.7E-15 124.0 15.1 168 298-488 145-345 (408)
169 TIGR01817 nifA Nif-specific re 99.2 1.9E-10 4E-15 138.1 17.9 208 299-528 188-439 (534)
170 PRK14700 recombination factor 99.2 1.6E-10 3.6E-15 127.5 15.7 139 439-577 7-168 (300)
171 KOG0735 AAA+-type ATPase [Post 99.2 1.3E-10 2.9E-15 137.4 15.8 188 304-514 664-880 (952)
172 COG0466 Lon ATP-dependent Lon 99.2 3.8E-10 8.2E-15 134.7 18.9 206 310-534 326-584 (782)
173 KOG0739 AAA+-type ATPase [Post 99.2 4.5E-11 9.7E-16 129.9 10.2 178 305-504 131-334 (439)
174 TIGR01243 CDC48 AAA family ATP 99.2 1.7E-10 3.7E-15 143.3 16.6 180 303-506 174-382 (733)
175 KOG0740 AAA+-type ATPase [Post 99.2 1.7E-10 3.7E-15 132.8 13.3 194 300-515 146-367 (428)
176 COG0542 clpA ATP-binding subun 99.2 4.2E-10 9.1E-15 137.4 17.3 188 307-514 491-749 (786)
177 KOG0728 26S proteasome regulat 99.2 3.1E-10 6.7E-15 120.9 13.8 196 296-515 136-364 (404)
178 PF06144 DNA_pol3_delta: DNA p 99.2 3.6E-10 7.8E-15 114.9 13.6 164 332-517 1-172 (172)
179 TIGR02640 gas_vesic_GvpN gas v 99.2 1.3E-09 2.9E-14 119.5 18.7 196 313-530 8-253 (262)
180 KOG2004 Mitochondrial ATP-depe 99.1 6.8E-10 1.5E-14 131.8 15.5 190 308-515 412-641 (906)
181 PRK05201 hslU ATP-dependent pr 99.1 9.7E-10 2.1E-14 126.7 15.8 108 410-517 249-404 (443)
182 TIGR00382 clpX endopeptidase C 99.1 1.1E-09 2.4E-14 127.0 16.2 192 306-516 75-381 (413)
183 KOG0729 26S proteasome regulat 99.1 4E-10 8.8E-15 120.9 11.4 177 304-504 174-382 (435)
184 KOG0726 26S proteasome regulat 99.1 3.7E-10 8.1E-15 122.5 10.8 158 299-479 177-366 (440)
185 TIGR00390 hslU ATP-dependent p 99.1 1.6E-09 3.4E-14 124.9 15.7 107 410-516 247-401 (441)
186 TIGR02974 phageshock_pspF psp 99.1 2.4E-09 5.3E-14 121.3 17.1 196 309-526 1-242 (329)
187 KOG2680 DNA helicase TIP49, TB 99.1 3.2E-09 7E-14 115.8 16.7 120 411-531 289-426 (454)
188 PRK13531 regulatory ATPase Rav 99.1 9E-09 1.9E-13 120.7 21.4 200 308-528 21-278 (498)
189 KOG0732 AAA+-type ATPase conta 99.1 1.4E-09 3.1E-14 135.1 15.3 192 304-512 262-481 (1080)
190 COG2607 Predicted ATPase (AAA+ 99.0 8.1E-09 1.8E-13 110.2 18.4 190 301-517 54-279 (287)
191 PRK11388 DNA-binding transcrip 99.0 3.3E-09 7.2E-14 129.9 18.0 206 304-531 322-568 (638)
192 PRK11608 pspF phage shock prot 99.0 6E-09 1.3E-13 118.0 17.7 200 305-526 4-249 (326)
193 cd00009 AAA The AAA+ (ATPases 99.0 3.9E-09 8.3E-14 101.2 13.3 136 310-467 1-150 (151)
194 TIGR02329 propionate_PrpR prop 99.0 6.8E-09 1.5E-13 124.2 18.2 206 304-531 209-467 (526)
195 PRK10820 DNA-binding transcrip 99.0 8.1E-09 1.8E-13 123.8 17.8 202 304-527 201-447 (520)
196 PF01637 Arch_ATPase: Archaeal 99.0 9.2E-09 2E-13 107.8 15.4 196 309-509 1-232 (234)
197 KOG0741 AAA+-type ATPase [Post 99.0 4.7E-09 1E-13 121.3 13.2 194 305-515 217-451 (744)
198 KOG1968 Replication factor C, 98.9 2.5E-09 5.4E-14 133.0 11.3 198 294-517 307-537 (871)
199 KOG0730 AAA+-type ATPase [Post 98.9 1.4E-08 3.1E-13 120.5 16.8 214 307-542 184-424 (693)
200 PRK05022 anaerobic nitric oxid 98.9 2.6E-08 5.6E-13 119.2 18.5 192 305-518 185-419 (509)
201 PRK15424 propionate catabolism 98.9 2.7E-08 6E-13 119.2 18.7 210 305-528 217-479 (538)
202 COG0542 clpA ATP-binding subun 98.9 2E-08 4.3E-13 123.0 15.2 204 295-517 158-391 (786)
203 KOG0744 AAA+-type ATPase [Post 98.9 6.5E-09 1.4E-13 114.6 9.8 162 306-482 141-340 (423)
204 PRK15429 formate hydrogenlyase 98.9 4.3E-08 9.3E-13 121.3 17.5 208 304-524 373-616 (686)
205 COG2204 AtoC Response regulato 98.8 3.1E-07 6.7E-12 107.6 23.2 203 304-528 138-385 (464)
206 PRK11331 5-methylcytosine-spec 98.8 1.5E-07 3.2E-12 109.8 20.3 164 306-479 174-369 (459)
207 KOG0651 26S proteasome regulat 98.8 1.6E-08 3.5E-13 111.2 9.9 138 303-462 128-293 (388)
208 KOG1514 Origin recognition com 98.8 3.8E-07 8.3E-12 109.2 21.7 176 327-517 420-626 (767)
209 PF01078 Mg_chelatase: Magnesi 98.8 1.1E-08 2.3E-13 108.4 7.9 136 305-448 1-157 (206)
210 TIGR01650 PD_CobS cobaltochela 98.8 2.8E-07 6.1E-12 103.9 18.8 161 301-482 39-233 (327)
211 TIGR00764 lon_rel lon-related 98.8 2.1E-07 4.6E-12 113.5 19.3 123 410-532 217-389 (608)
212 TIGR02915 PEP_resp_reg putativ 98.8 1.5E-07 3.2E-12 110.3 16.8 201 305-527 137-382 (445)
213 COG3829 RocR Transcriptional r 98.7 1.5E-07 3.2E-12 110.5 16.1 211 305-527 243-490 (560)
214 PRK10923 glnG nitrogen regulat 98.7 1.9E-07 4.2E-12 110.1 16.8 202 305-528 136-382 (469)
215 COG1221 PspF Transcriptional r 98.7 7.9E-08 1.7E-12 110.8 13.0 195 304-518 75-308 (403)
216 smart00763 AAA_PrkA PrkA AAA d 98.7 1.4E-07 2.9E-12 107.6 14.7 200 301-500 44-348 (361)
217 PF07724 AAA_2: AAA domain (Cd 98.7 3E-08 6.5E-13 102.6 8.1 102 330-451 4-131 (171)
218 PRK15115 response regulator Gl 98.7 4.6E-07 1E-11 106.1 18.9 202 308-531 135-381 (444)
219 KOG2227 Pre-initiation complex 98.7 7.3E-08 1.6E-12 111.0 10.9 211 297-516 143-376 (529)
220 PRK13765 ATP-dependent proteas 98.7 4.4E-07 9.6E-12 110.7 17.7 53 301-356 25-77 (637)
221 PHA02244 ATPase-like protein 98.6 9.3E-07 2E-11 101.1 18.4 131 317-471 110-263 (383)
222 COG1219 ClpX ATP-dependent pro 98.6 4E-07 8.7E-12 100.7 14.2 193 306-517 59-365 (408)
223 PRK11361 acetoacetate metaboli 98.6 6.7E-07 1.4E-11 104.9 17.0 203 305-529 141-388 (457)
224 COG0714 MoxR-like ATPases [Gen 98.6 3E-07 6.6E-12 104.1 13.3 146 307-473 24-193 (329)
225 TIGR01818 ntrC nitrogen regula 98.6 9.5E-07 2.1E-11 103.9 17.9 203 306-530 133-380 (463)
226 KOG0735 AAA+-type ATPase [Post 98.6 3.8E-07 8.3E-12 108.8 13.9 188 329-534 431-648 (952)
227 PF05621 TniB: Bacterial TniB 98.6 1.8E-06 4E-11 96.1 17.8 210 310-530 37-285 (302)
228 COG1239 ChlI Mg-chelatase subu 98.6 6.3E-07 1.4E-11 102.9 14.3 179 305-484 15-234 (423)
229 smart00350 MCM minichromosome 98.6 1.5E-06 3.2E-11 104.3 17.8 157 307-481 203-399 (509)
230 TIGR00368 Mg chelatase-related 98.6 1.2E-06 2.7E-11 104.4 17.0 156 304-473 189-395 (499)
231 PF07728 AAA_5: AAA domain (dy 98.5 5.1E-08 1.1E-12 96.0 3.8 114 331-461 1-139 (139)
232 PRK10365 transcriptional regul 98.5 2.4E-06 5.2E-11 99.7 16.7 200 308-529 140-384 (441)
233 smart00382 AAA ATPases associa 98.5 1.1E-06 2.4E-11 83.0 11.3 120 329-462 2-139 (148)
234 COG3604 FhlA Transcriptional r 98.5 3E-06 6.6E-11 98.7 16.1 201 305-526 221-464 (550)
235 COG0606 Predicted ATPase with 98.4 4.7E-07 1E-11 105.2 8.8 47 304-353 176-222 (490)
236 TIGR02031 BchD-ChlD magnesium 98.4 5.5E-06 1.2E-10 101.0 17.0 185 330-532 17-256 (589)
237 PF00158 Sigma54_activat: Sigm 98.4 1.6E-06 3.4E-11 89.6 10.2 121 309-450 1-144 (168)
238 PRK08116 hypothetical protein; 98.4 9.6E-07 2.1E-11 97.6 9.1 154 299-470 77-250 (268)
239 COG3267 ExeA Type II secretory 98.4 1E-05 2.3E-10 87.8 16.6 192 310-515 34-249 (269)
240 KOG1051 Chaperone HSP104 and r 98.4 2E-06 4.3E-11 107.0 12.6 130 307-450 562-711 (898)
241 PTZ00111 DNA replication licen 98.4 2.7E-05 6E-10 97.4 22.4 139 308-463 451-636 (915)
242 PF14532 Sigma54_activ_2: Sigm 98.4 1.6E-06 3.5E-11 85.9 9.6 126 310-468 1-137 (138)
243 PF07726 AAA_3: ATPase family 98.4 7.8E-07 1.7E-11 87.8 7.1 112 331-462 1-130 (131)
244 PRK12377 putative replication 98.3 2E-06 4.3E-11 94.2 10.3 152 299-470 66-236 (248)
245 PF13173 AAA_14: AAA domain 98.3 2.9E-06 6.4E-11 83.1 9.0 117 330-474 3-127 (128)
246 PRK09862 putative ATP-dependen 98.3 2.2E-05 4.7E-10 93.9 17.4 160 304-470 188-389 (506)
247 PRK07952 DNA replication prote 98.3 3.6E-06 7.8E-11 91.9 10.1 153 297-468 62-233 (244)
248 PF00931 NB-ARC: NB-ARC domain 98.3 3.4E-05 7.3E-10 84.7 17.8 187 313-515 2-206 (287)
249 KOG2170 ATPase of the AAA+ sup 98.2 1.6E-05 3.4E-10 88.0 13.8 128 309-451 84-226 (344)
250 PF14840 DNA_pol3_delt_C: Proc 98.2 2E-05 4.2E-10 77.9 13.3 106 540-645 2-121 (125)
251 KOG0745 Putative ATP-dependent 98.2 2.5E-05 5.4E-10 89.7 15.2 123 330-471 227-388 (564)
252 COG1220 HslU ATP-dependent pro 98.2 2.8E-05 6.1E-10 87.0 15.2 124 411-534 251-433 (444)
253 PRK15455 PrkA family serine pr 98.1 0.00013 2.8E-09 87.6 20.6 53 302-354 71-128 (644)
254 COG3283 TyrR Transcriptional r 98.1 6.3E-05 1.4E-09 84.7 16.8 196 304-527 201-442 (511)
255 PRK08181 transposase; Validate 98.1 1E-05 2.3E-10 89.6 10.3 106 321-450 101-209 (269)
256 PRK06921 hypothetical protein; 98.1 9.2E-06 2E-10 89.8 9.8 26 329-354 117-142 (266)
257 PRK04841 transcriptional regul 98.1 0.00022 4.8E-09 90.6 22.9 201 303-513 10-227 (903)
258 PRK06526 transposase; Provisio 98.0 2.1E-05 4.5E-10 86.6 9.8 100 330-450 99-201 (254)
259 PF13401 AAA_22: AAA domain; P 98.0 2E-05 4.3E-10 76.2 8.0 102 330-449 5-125 (131)
260 PRK08939 primosomal protein Dn 97.9 2.9E-05 6.2E-10 87.6 9.6 131 299-450 119-261 (306)
261 PRK13406 bchD magnesium chelat 97.9 0.00038 8.3E-09 84.8 19.5 202 312-532 8-248 (584)
262 PF05729 NACHT: NACHT domain 97.9 3.5E-05 7.5E-10 76.7 8.9 145 331-483 2-164 (166)
263 KOG0736 Peroxisome assembly fa 97.9 8.6E-05 1.9E-09 90.1 13.3 178 306-512 400-606 (953)
264 PRK04132 replication factor C 97.9 4.6E-06 9.9E-11 104.4 2.6 51 294-345 6-56 (846)
265 PRK06835 DNA replication prote 97.8 6.4E-05 1.4E-09 85.6 9.6 120 330-468 184-316 (329)
266 PF01695 IstB_IS21: IstB-like 97.8 1.4E-05 3E-10 83.3 3.7 102 329-450 47-150 (178)
267 PF13604 AAA_30: AAA domain; P 97.8 5.2E-05 1.1E-09 80.1 7.2 137 318-469 9-158 (196)
268 COG3284 AcoR Transcriptional a 97.7 0.00013 2.8E-09 87.6 9.8 205 311-525 317-548 (606)
269 COG1484 DnaC DNA replication p 97.7 0.00017 3.6E-09 79.4 9.9 27 328-354 104-130 (254)
270 PLN03210 Resistant to P. syrin 97.7 0.00095 2E-08 87.8 18.5 195 304-508 181-392 (1153)
271 PF12775 AAA_7: P-loop contain 97.6 0.00024 5.1E-09 79.0 10.3 140 320-483 27-194 (272)
272 KOG0741 AAA+-type ATPase [Post 97.6 0.00061 1.3E-08 80.1 13.7 145 330-500 539-699 (744)
273 KOG0478 DNA replication licens 97.6 0.00052 1.1E-08 82.7 13.5 124 331-471 464-615 (804)
274 PRK09183 transposase/IS protei 97.6 0.00019 4.2E-09 79.1 9.4 101 330-450 103-206 (259)
275 PHA00729 NTP-binding motif con 97.6 0.00027 5.9E-09 76.4 10.1 132 317-480 6-138 (226)
276 TIGR02688 conserved hypothetic 97.6 0.0016 3.4E-08 76.2 16.1 100 300-436 184-290 (449)
277 PF14516 AAA_35: AAA-like doma 97.6 0.01 2.2E-07 67.8 22.5 208 309-527 13-253 (331)
278 COG1241 MCM2 Predicted ATPase 97.6 0.002 4.4E-08 79.3 17.5 144 306-466 285-465 (682)
279 PF13191 AAA_16: AAA ATPase do 97.5 6.1E-05 1.3E-09 76.7 3.9 49 308-356 1-51 (185)
280 COG1373 Predicted ATPase (AAA+ 97.5 0.0046 9.9E-08 72.4 19.3 135 314-477 24-162 (398)
281 PRK04296 thymidine kinase; Pro 97.5 0.00078 1.7E-08 70.8 11.6 105 330-448 3-114 (190)
282 PF12774 AAA_6: Hydrolytic ATP 97.5 0.0011 2.4E-08 72.1 12.9 141 313-488 19-183 (231)
283 PF03266 NTPase_1: NTPase; In 97.5 0.00018 3.9E-09 74.4 6.2 142 331-477 1-166 (168)
284 KOG2228 Origin recognition com 97.5 0.002 4.4E-08 72.7 14.6 161 312-482 33-219 (408)
285 COG4650 RtcR Sigma54-dependent 97.4 0.011 2.4E-07 65.6 19.3 185 330-532 209-441 (531)
286 PHA02774 E1; Provisional 97.4 0.00085 1.9E-08 80.8 11.7 138 315-488 420-587 (613)
287 COG1618 Predicted nucleotide k 97.4 0.0017 3.7E-08 66.6 11.8 132 329-466 5-158 (179)
288 PF07693 KAP_NTPase: KAP famil 97.3 0.019 4.1E-07 64.4 19.6 77 408-484 170-265 (325)
289 KOG2543 Origin recognition com 97.2 0.0026 5.6E-08 72.9 12.2 211 308-523 7-239 (438)
290 PF06309 Torsin: Torsin; Inte 97.2 0.001 2.2E-08 65.9 7.5 49 307-355 25-79 (127)
291 COG5271 MDN1 AAA ATPase contai 97.2 0.0012 2.6E-08 84.9 9.7 141 318-480 1535-1701(4600)
292 TIGR01618 phage_P_loop phage n 97.2 0.00065 1.4E-08 73.3 6.5 85 327-424 10-95 (220)
293 COG5271 MDN1 AAA ATPase contai 97.1 0.0033 7.1E-08 81.2 12.8 148 331-502 890-1062(4600)
294 PF00910 RNA_helicase: RNA hel 97.1 0.0012 2.7E-08 62.9 6.9 24 332-355 1-24 (107)
295 KOG0480 DNA replication licens 97.1 0.015 3.3E-07 70.1 16.9 150 305-471 343-531 (764)
296 PF05970 PIF1: PIF1-like helic 97.0 0.0014 3E-08 75.8 7.9 42 312-354 6-47 (364)
297 KOG0481 DNA replication licens 97.0 0.019 4.2E-07 67.7 16.6 111 309-436 333-454 (729)
298 KOG0477 DNA replication licens 97.0 0.029 6.2E-07 67.6 17.9 138 309-464 451-626 (854)
299 PF09848 DUF2075: Uncharacteri 97.0 0.00084 1.8E-08 77.1 5.4 24 330-353 2-25 (352)
300 PRK13695 putative NTPase; Prov 96.8 0.0078 1.7E-07 62.0 10.7 70 410-482 96-172 (174)
301 COG2909 MalT ATP-dependent tra 96.8 0.081 1.7E-06 66.2 20.8 93 411-506 130-228 (894)
302 KOG0482 DNA replication licens 96.8 0.047 1E-06 64.6 17.8 121 297-436 332-465 (721)
303 PRK10536 hypothetical protein; 96.8 0.0064 1.4E-07 67.1 10.2 44 307-353 55-98 (262)
304 cd01120 RecA-like_NTPases RecA 96.8 0.0033 7.1E-08 62.0 7.2 23 332-354 2-24 (165)
305 PRK12723 flagellar biosynthesi 96.8 0.0084 1.8E-07 70.0 11.5 139 329-473 174-326 (388)
306 PF10443 RNA12: RNA12 protein; 96.7 0.058 1.3E-06 63.3 17.8 106 411-517 149-284 (431)
307 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.0072 1.6E-07 69.2 10.1 49 305-353 58-112 (358)
308 PF00448 SRP54: SRP54-type pro 96.7 0.0038 8.2E-08 66.3 7.4 125 329-472 1-153 (196)
309 PF03969 AFG1_ATPase: AFG1-lik 96.7 0.0026 5.7E-08 73.6 6.6 119 327-469 60-201 (362)
310 PHA02624 large T antigen; Prov 96.7 0.0046 1E-07 75.0 8.7 26 329-354 431-456 (647)
311 TIGR02768 TraA_Ti Ti-type conj 96.7 0.0064 1.4E-07 76.6 10.3 105 330-447 369-474 (744)
312 PF00493 MCM: MCM2/3/5 family 96.7 0.0012 2.5E-08 75.5 3.3 140 308-464 25-201 (331)
313 TIGR01448 recD_rel helicase, p 96.6 0.004 8.6E-08 78.1 8.2 106 330-447 339-450 (720)
314 KOG1051 Chaperone HSP104 and r 96.5 0.0076 1.6E-07 76.1 9.6 182 305-500 184-385 (898)
315 PRK13889 conjugal transfer rel 96.5 0.012 2.7E-07 75.6 11.2 104 331-447 364-468 (988)
316 PTZ00202 tuzin; Provisional 96.5 0.059 1.3E-06 63.6 15.6 52 303-354 258-311 (550)
317 PF10236 DAP3: Mitochondrial r 96.5 0.053 1.1E-06 61.6 15.1 48 463-510 258-308 (309)
318 PRK14974 cell division protein 96.5 0.018 3.9E-07 66.1 11.4 26 329-354 140-165 (336)
319 PF08542 Rep_fac_C: Replicatio 96.4 0.05 1.1E-06 50.0 11.9 87 534-642 3-89 (89)
320 KOG0922 DEAH-box RNA helicase 96.4 0.021 4.5E-07 69.4 11.7 51 398-448 151-203 (674)
321 PF04851 ResIII: Type III rest 96.4 0.012 2.7E-07 59.4 8.3 44 311-354 7-50 (184)
322 PRK14722 flhF flagellar biosyn 96.3 0.016 3.4E-07 67.4 10.0 25 329-353 137-161 (374)
323 PRK11889 flhF flagellar biosyn 96.3 0.017 3.6E-07 67.5 9.7 26 329-354 241-266 (436)
324 KOG3347 Predicted nucleotide k 96.3 0.014 3E-07 59.5 7.9 28 327-354 5-32 (176)
325 PF05272 VirE: Virulence-assoc 96.3 0.026 5.7E-07 60.1 10.5 102 329-468 52-169 (198)
326 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.018 3.9E-07 59.4 8.8 121 331-462 4-147 (159)
327 PF13671 AAA_33: AAA domain; P 96.2 0.0037 8.1E-08 61.4 3.4 24 331-354 1-24 (143)
328 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.034 7.5E-07 57.2 10.7 25 332-356 2-26 (183)
329 PRK05986 cob(I)alamin adenolsy 96.2 0.01 2.2E-07 62.9 6.6 128 330-462 23-167 (191)
330 PRK13826 Dtr system oriT relax 96.1 0.016 3.5E-07 75.1 9.5 105 330-445 398-503 (1102)
331 TIGR01447 recD exodeoxyribonuc 96.1 0.02 4.3E-07 70.3 9.9 36 410-448 259-294 (586)
332 PRK05703 flhF flagellar biosyn 96.1 0.043 9.3E-07 65.0 12.3 25 330-354 222-246 (424)
333 COG2842 Uncharacterized ATPase 96.1 0.028 6E-07 62.9 9.9 192 305-517 70-277 (297)
334 PF05707 Zot: Zonular occluden 96.1 0.012 2.7E-07 61.9 6.7 60 410-469 79-146 (193)
335 PRK10875 recD exonuclease V su 96.0 0.02 4.3E-07 70.7 9.2 36 411-449 266-301 (615)
336 cd00046 DEXDc DEAD-like helica 96.0 0.024 5.1E-07 53.5 7.8 25 331-355 2-26 (144)
337 KOG1808 AAA ATPase containing 96.0 0.023 5.1E-07 76.0 10.1 149 313-482 426-599 (1856)
338 COG4178 ABC-type uncharacteriz 96.0 0.018 3.8E-07 70.2 8.4 49 410-460 533-582 (604)
339 PRK12724 flagellar biosynthesi 95.9 0.04 8.7E-07 64.9 10.8 129 330-472 224-372 (432)
340 cd03281 ABC_MSH5_euk MutS5 hom 95.9 0.018 4E-07 61.8 7.4 23 329-351 29-51 (213)
341 TIGR00708 cobA cob(I)alamin ad 95.9 0.023 5E-07 59.3 7.8 120 330-462 6-149 (173)
342 PRK00771 signal recognition pa 95.9 0.05 1.1E-06 64.6 11.4 27 329-355 95-121 (437)
343 TIGR02858 spore_III_AA stage I 95.9 0.047 1E-06 60.9 10.5 30 324-354 107-136 (270)
344 PF13207 AAA_17: AAA domain; P 95.9 0.0063 1.4E-07 58.2 3.2 25 331-355 1-25 (121)
345 COG4088 Predicted nucleotide k 95.9 0.05 1.1E-06 58.2 10.0 27 330-356 2-28 (261)
346 smart00487 DEXDc DEAD-like hel 95.8 0.021 4.5E-07 57.4 6.7 24 330-353 25-49 (201)
347 PRK14532 adenylate kinase; Pro 95.8 0.074 1.6E-06 55.2 10.9 26 331-356 2-27 (188)
348 TIGR00767 rho transcription te 95.7 0.016 3.6E-07 67.6 6.4 99 330-437 169-281 (415)
349 PF12780 AAA_8: P-loop contain 95.7 0.11 2.5E-06 57.8 12.9 148 308-484 9-212 (268)
350 cd01128 rho_factor Transcripti 95.7 0.012 2.6E-07 64.9 5.0 25 330-354 17-41 (249)
351 cd01124 KaiC KaiC is a circadi 95.7 0.022 4.7E-07 58.6 6.6 23 332-354 2-24 (187)
352 PF13479 AAA_24: AAA domain 95.7 0.01 2.3E-07 63.4 4.3 75 330-422 4-80 (213)
353 cd03283 ABC_MutS-like MutS-lik 95.7 0.06 1.3E-06 57.2 9.9 24 330-353 26-49 (199)
354 cd01129 PulE-GspE PulE/GspE Th 95.6 0.041 9E-07 61.1 8.9 50 303-354 56-105 (264)
355 PRK06762 hypothetical protein; 95.6 0.079 1.7E-06 53.8 10.0 25 329-353 2-26 (166)
356 cd02021 GntK Gluconate kinase 95.5 0.03 6.6E-07 55.8 6.7 23 332-354 2-24 (150)
357 PRK09376 rho transcription ter 95.5 0.013 2.7E-07 68.3 4.3 25 331-355 171-195 (416)
358 COG1643 HrpA HrpA-like helicas 95.5 0.053 1.1E-06 68.8 9.9 53 398-450 150-205 (845)
359 TIGR02760 TraI_TIGR conjugativ 95.4 0.066 1.4E-06 73.9 11.5 120 312-445 431-564 (1960)
360 PF04665 Pox_A32: Poxvirus A32 95.4 0.11 2.4E-06 57.1 11.0 68 410-478 98-166 (241)
361 PF00437 T2SE: Type II/IV secr 95.4 0.069 1.5E-06 58.8 9.6 114 304-436 101-220 (270)
362 PRK14527 adenylate kinase; Pro 95.4 0.14 3.1E-06 53.5 11.4 28 329-356 6-33 (191)
363 KOG0923 mRNA splicing factor A 95.4 0.064 1.4E-06 65.1 9.6 52 398-449 366-419 (902)
364 PRK13900 type IV secretion sys 95.3 0.22 4.8E-06 57.2 13.7 44 308-354 142-185 (332)
365 TIGR02237 recomb_radB DNA repa 95.3 0.056 1.2E-06 57.0 8.3 25 330-354 13-37 (209)
366 PHA02530 pseT polynucleotide k 95.3 0.068 1.5E-06 59.6 9.2 24 330-353 3-26 (300)
367 cd03243 ABC_MutS_homologs The 95.2 0.043 9.3E-07 58.0 7.0 23 330-352 30-52 (202)
368 cd01121 Sms Sms (bacterial rad 95.2 0.1 2.2E-06 60.8 10.4 25 330-354 83-107 (372)
369 cd03247 ABCC_cytochrome_bd The 95.2 0.044 9.5E-07 56.6 6.7 44 409-452 115-159 (178)
370 PF02562 PhoH: PhoH-like prote 95.1 0.071 1.5E-06 57.2 8.3 116 330-448 20-154 (205)
371 PRK08118 topology modulation p 95.1 0.14 3E-06 53.0 10.2 26 331-356 3-28 (167)
372 PRK10416 signal recognition pa 95.1 0.18 4E-06 57.5 12.1 26 329-354 114-139 (318)
373 PRK14712 conjugal transfer nic 95.1 0.22 4.7E-06 67.0 14.3 158 330-515 853-1025(1623)
374 PRK14528 adenylate kinase; Pro 95.1 0.14 3.1E-06 53.6 10.4 26 331-356 3-28 (186)
375 cd03223 ABCD_peroxisomal_ALDP 95.1 0.068 1.5E-06 54.9 7.8 40 410-451 109-149 (166)
376 PRK10078 ribose 1,5-bisphospho 95.1 0.08 1.7E-06 55.2 8.4 25 330-354 3-27 (186)
377 cd01428 ADK Adenylate kinase ( 95.1 0.018 3.9E-07 59.6 3.6 25 332-356 2-26 (194)
378 CHL00195 ycf46 Ycf46; Provisio 95.1 0.26 5.7E-06 59.4 13.8 118 411-531 82-205 (489)
379 COG1419 FlhF Flagellar GTP-bin 95.0 0.33 7.1E-06 56.9 13.8 115 329-463 203-337 (407)
380 COG1485 Predicted ATPase [Gene 95.0 0.043 9.3E-07 62.8 6.5 28 327-354 63-90 (367)
381 TIGR01613 primase_Cterm phage/ 95.0 0.24 5.1E-06 56.0 12.5 133 306-468 47-203 (304)
382 TIGR03574 selen_PSTK L-seryl-t 95.0 0.048 1E-06 59.5 6.7 23 332-354 2-24 (249)
383 PRK12727 flagellar biosynthesi 95.0 0.14 3E-06 62.1 10.9 26 329-354 350-375 (559)
384 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.057 1.2E-06 57.7 7.1 24 330-353 30-53 (204)
385 cd03280 ABC_MutS2 MutS2 homolo 95.0 0.12 2.5E-06 54.7 9.3 22 330-351 29-50 (200)
386 PF01443 Viral_helicase1: Vira 94.9 0.032 6.9E-07 59.4 5.1 22 332-353 1-22 (234)
387 PRK06995 flhF flagellar biosyn 94.9 0.16 3.6E-06 60.9 11.4 26 329-354 256-281 (484)
388 PF00488 MutS_V: MutS domain V 94.9 0.14 2.9E-06 56.1 9.9 115 330-451 44-167 (235)
389 PRK12726 flagellar biosynthesi 94.9 0.14 3E-06 59.8 10.3 26 329-354 206-231 (407)
390 PRK09435 membrane ATPase/prote 94.9 0.36 7.9E-06 55.5 13.6 29 327-355 54-82 (332)
391 cd03284 ABC_MutS1 MutS1 homolo 94.9 0.085 1.8E-06 56.8 8.1 23 330-352 31-53 (216)
392 cd03216 ABC_Carb_Monos_I This 94.9 0.05 1.1E-06 55.7 6.1 42 410-451 100-143 (163)
393 PRK06067 flagellar accessory p 94.9 0.06 1.3E-06 58.1 7.0 24 330-353 26-49 (234)
394 PRK04220 2-phosphoglycerate ki 94.9 0.15 3.1E-06 57.9 10.2 37 320-356 83-119 (301)
395 cd03287 ABC_MSH3_euk MutS3 hom 94.8 0.11 2.5E-06 56.3 9.0 22 330-351 32-53 (222)
396 PRK11823 DNA repair protein Ra 94.8 0.08 1.7E-06 63.1 8.5 25 330-354 81-105 (446)
397 cd01123 Rad51_DMC1_radA Rad51_ 94.8 0.12 2.5E-06 55.5 8.8 24 330-353 20-43 (235)
398 TIGR02782 TrbB_P P-type conjug 94.7 0.16 3.5E-06 57.4 10.2 48 304-354 106-157 (299)
399 TIGR00064 ftsY signal recognit 94.7 0.14 3.1E-06 57.2 9.5 26 329-354 72-97 (272)
400 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.7 0.11 2.5E-06 52.1 8.0 99 330-451 27-128 (144)
401 PRK13709 conjugal transfer nic 94.7 0.14 3.1E-06 69.4 11.0 159 330-515 985-1157(1747)
402 cd03228 ABCC_MRP_Like The MRP 94.6 0.17 3.7E-06 52.0 9.4 43 410-452 114-157 (171)
403 PRK00300 gmk guanylate kinase; 94.6 0.14 3E-06 53.9 8.7 26 329-354 5-30 (205)
404 PF00519 PPV_E1_C: Papillomavi 94.6 0.16 3.5E-06 59.0 9.8 40 315-354 248-287 (432)
405 PRK00131 aroK shikimate kinase 94.6 0.028 6E-07 56.9 3.3 27 329-355 4-30 (175)
406 PRK06731 flhF flagellar biosyn 94.5 0.19 4.1E-06 56.2 10.0 113 330-448 76-195 (270)
407 TIGR01069 mutS2 MutS2 family p 94.5 0.2 4.4E-06 63.6 11.4 23 330-352 323-345 (771)
408 cd03213 ABCG_EPDR ABCG transpo 94.5 0.086 1.9E-06 55.4 6.9 42 410-451 129-172 (194)
409 cd03227 ABC_Class2 ABC-type Cl 94.5 0.16 3.4E-06 52.0 8.6 26 330-355 22-47 (162)
410 COG1116 TauB ABC-type nitrate/ 94.4 0.13 2.8E-06 56.5 8.2 26 330-355 30-55 (248)
411 PRK08533 flagellar accessory p 94.4 0.096 2.1E-06 56.9 7.3 24 330-353 25-48 (230)
412 PRK07261 topology modulation p 94.4 0.1 2.2E-06 54.0 7.2 24 332-355 3-26 (171)
413 TIGR02788 VirB11 P-type DNA tr 94.4 0.27 6E-06 55.7 11.2 38 314-354 132-169 (308)
414 COG4619 ABC-type uncharacteriz 94.4 0.2 4.4E-06 52.3 9.1 25 330-354 30-54 (223)
415 cd01131 PilT Pilus retraction 94.4 0.19 4.1E-06 53.3 9.3 25 330-354 2-26 (198)
416 cd00267 ABC_ATPase ABC (ATP-bi 94.4 0.17 3.7E-06 51.1 8.6 104 330-451 26-141 (157)
417 COG1067 LonB Predicted ATP-dep 94.4 0.25 5.4E-06 61.3 11.5 226 298-533 95-398 (647)
418 PF01926 MMR_HSR1: 50S ribosom 94.3 0.12 2.6E-06 49.3 6.9 105 332-445 2-114 (116)
419 PF13086 AAA_11: AAA domain; P 94.3 0.037 8E-07 58.0 3.8 23 331-353 19-41 (236)
420 TIGR01967 DEAH_box_HrpA ATP-de 94.3 0.18 3.9E-06 66.7 10.6 38 313-353 69-106 (1283)
421 cd03246 ABCC_Protease_Secretio 94.3 0.23 5E-06 51.1 9.5 42 410-451 114-157 (173)
422 PRK13541 cytochrome c biogenes 94.3 0.15 3.4E-06 53.4 8.3 44 410-453 141-186 (195)
423 PRK14737 gmk guanylate kinase; 94.3 0.4 8.6E-06 50.6 11.3 25 329-353 4-28 (186)
424 KOG0925 mRNA splicing factor A 94.3 0.46 9.9E-06 56.3 12.5 50 398-447 147-198 (699)
425 COG2804 PulE Type II secretory 94.3 0.14 3E-06 61.2 8.5 58 297-356 228-285 (500)
426 PRK00091 miaA tRNA delta(2)-is 94.3 0.2 4.4E-06 56.9 9.7 27 329-355 4-30 (307)
427 cd03238 ABC_UvrA The excision 94.2 0.15 3.1E-06 53.5 7.8 41 411-451 108-150 (176)
428 COG1119 ModF ABC-type molybden 94.2 0.21 4.6E-06 54.9 9.1 53 409-461 188-244 (257)
429 PF13238 AAA_18: AAA domain; P 94.2 0.034 7.4E-07 53.1 2.9 22 332-353 1-22 (129)
430 cd03222 ABC_RNaseL_inhibitor T 94.2 0.17 3.6E-06 53.1 8.2 103 330-451 26-133 (177)
431 TIGR02012 tigrfam_recA protein 94.2 0.11 2.3E-06 59.5 7.2 25 330-354 56-80 (321)
432 PRK14721 flhF flagellar biosyn 94.1 0.27 5.8E-06 58.2 10.6 25 329-353 191-215 (420)
433 PRK08356 hypothetical protein; 94.1 0.13 2.7E-06 54.2 7.2 22 330-351 6-27 (195)
434 cd03115 SRP The signal recogni 94.1 0.21 4.5E-06 51.2 8.5 24 331-354 2-25 (173)
435 TIGR01420 pilT_fam pilus retra 94.0 0.37 8E-06 55.5 11.4 25 330-354 123-147 (343)
436 cd02020 CMPK Cytidine monophos 94.0 0.72 1.6E-05 45.2 12.0 24 332-355 2-25 (147)
437 COG3899 Predicted ATPase [Gene 94.0 1.5 3.3E-05 56.5 17.9 201 309-516 2-265 (849)
438 TIGR03878 thermo_KaiC_2 KaiC d 94.0 0.16 3.6E-06 56.1 8.2 24 330-353 37-60 (259)
439 cd01393 recA_like RecA is a b 94.0 0.33 7.1E-06 51.7 10.2 24 330-353 20-43 (226)
440 cd03278 ABC_SMC_barmotin Barmo 94.0 0.36 7.7E-06 51.2 10.3 42 410-451 135-177 (197)
441 TIGR01425 SRP54_euk signal rec 94.0 0.22 4.9E-06 59.0 9.5 26 329-354 100-125 (429)
442 PRK14723 flhF flagellar biosyn 93.9 0.19 4.2E-06 63.2 9.2 25 329-353 185-209 (767)
443 cd03214 ABC_Iron-Siderophores_ 93.8 0.18 3.8E-06 52.4 7.5 42 410-451 115-159 (180)
444 TIGR00150 HI0065_YjeE ATPase, 93.8 0.065 1.4E-06 53.8 4.0 28 329-356 22-49 (133)
445 PRK12337 2-phosphoglycerate ki 93.8 0.35 7.6E-06 57.7 10.6 34 323-356 249-282 (475)
446 COG1124 DppF ABC-type dipeptid 93.7 0.24 5.2E-06 54.4 8.5 53 410-463 159-214 (252)
447 TIGR02538 type_IV_pilB type IV 93.7 0.55 1.2E-05 57.7 12.7 50 303-354 292-341 (564)
448 PRK03839 putative kinase; Prov 93.7 0.049 1.1E-06 56.2 3.2 26 331-356 2-27 (180)
449 TIGR02533 type_II_gspE general 93.6 0.19 4.1E-06 60.6 8.3 51 302-354 217-267 (486)
450 COG1936 Predicted nucleotide k 93.6 0.34 7.5E-06 50.7 9.0 24 331-355 2-25 (180)
451 cd03239 ABC_SMC_head The struc 93.6 0.32 6.9E-06 50.9 9.0 42 410-451 116-159 (178)
452 TIGR01970 DEAH_box_HrpB ATP-de 93.6 0.44 9.4E-06 61.0 11.8 32 314-348 5-36 (819)
453 PF13245 AAA_19: Part of AAA d 93.6 0.085 1.8E-06 47.8 4.1 24 330-353 11-34 (76)
454 PRK13808 adenylate kinase; Pro 93.6 0.34 7.4E-06 55.7 9.9 25 332-356 3-27 (333)
455 cd01394 radB RadB. The archaea 93.6 0.38 8.1E-06 51.2 9.6 25 330-354 20-44 (218)
456 cd03286 ABC_MSH6_euk MutS6 hom 93.5 0.3 6.4E-06 52.9 8.9 115 330-451 31-154 (218)
457 PRK11131 ATP-dependent RNA hel 93.5 0.32 7E-06 64.3 10.7 37 313-352 76-112 (1294)
458 PRK11176 lipid transporter ATP 93.5 0.13 2.7E-06 63.0 6.7 41 410-450 498-539 (582)
459 TIGR01360 aden_kin_iso1 adenyl 93.5 0.059 1.3E-06 55.4 3.3 27 330-356 4-30 (188)
460 TIGR02203 MsbA_lipidA lipid A 93.5 0.11 2.4E-06 63.2 6.2 41 410-450 487-528 (571)
461 TIGR02868 CydC thiol reductant 93.5 0.23 5E-06 60.1 8.8 25 330-354 362-386 (529)
462 PF10923 DUF2791: P-loop Domai 93.5 2.7 5.9E-05 49.8 17.2 90 413-502 242-372 (416)
463 cd03276 ABC_SMC6_euk Eukaryoti 93.4 0.8 1.7E-05 48.6 11.8 59 409-469 130-193 (198)
464 PRK09361 radB DNA repair and r 93.4 0.34 7.5E-06 51.8 9.1 26 329-354 23-48 (225)
465 PRK00409 recombination and DNA 93.4 0.6 1.3E-05 59.5 12.6 24 330-353 328-351 (782)
466 cd00464 SK Shikimate kinase (S 93.4 0.062 1.3E-06 53.4 3.2 24 332-355 2-25 (154)
467 PRK06547 hypothetical protein; 93.4 0.11 2.4E-06 54.0 5.2 30 326-355 12-41 (172)
468 PRK05800 cobU adenosylcobinami 93.4 0.29 6.3E-06 50.9 8.2 24 331-354 3-26 (170)
469 PRK06696 uridine kinase; Valid 93.3 0.13 2.8E-06 55.4 5.7 42 313-354 4-47 (223)
470 cd00983 recA RecA is a bacter 93.3 0.17 3.8E-06 57.9 7.0 25 330-354 56-80 (325)
471 cd01852 AIG1 AIG1 (avrRpt2-ind 93.3 1.1 2.4E-05 47.0 12.5 22 331-352 2-23 (196)
472 TIGR02525 plasmid_TraJ plasmid 93.3 3.1 6.8E-05 48.7 17.3 26 330-355 150-175 (372)
473 PRK10867 signal recognition pa 93.3 0.97 2.1E-05 53.9 13.3 26 329-354 100-125 (433)
474 PRK09354 recA recombinase A; P 93.3 0.28 6.2E-06 56.7 8.6 24 330-353 61-84 (349)
475 KOG3354 Gluconate kinase [Carb 93.3 0.38 8.3E-06 49.6 8.4 29 328-356 11-39 (191)
476 cd01878 HflX HflX subfamily. 93.2 1.2 2.7E-05 46.5 12.8 23 330-352 42-64 (204)
477 cd03285 ABC_MSH2_euk MutS2 hom 93.2 0.29 6.3E-06 53.0 8.2 24 329-352 30-53 (222)
478 PLN02674 adenylate kinase 93.2 0.5 1.1E-05 52.1 10.0 30 327-356 29-58 (244)
479 cd03229 ABC_Class3 This class 93.2 0.38 8.3E-06 49.8 8.7 42 410-451 118-162 (178)
480 COG0703 AroK Shikimate kinase 93.2 0.19 4.2E-06 52.5 6.4 26 330-355 3-28 (172)
481 TIGR01313 therm_gnt_kin carboh 93.1 0.054 1.2E-06 54.9 2.3 23 332-354 1-23 (163)
482 TIGR02760 TraI_TIGR conjugativ 93.1 0.31 6.8E-06 67.6 10.1 108 330-447 1037-1147(1960)
483 COG0529 CysC Adenylylsulfate k 93.1 0.24 5.3E-06 52.0 6.9 36 320-355 14-49 (197)
484 PRK13947 shikimate kinase; Pro 93.1 0.073 1.6E-06 54.2 3.1 26 331-356 3-28 (171)
485 PRK13948 shikimate kinase; Pro 93.0 0.25 5.4E-06 52.1 7.1 29 327-355 8-36 (182)
486 TIGR01663 PNK-3'Pase polynucle 93.0 0.25 5.4E-06 60.1 8.0 27 328-354 368-394 (526)
487 PRK14531 adenylate kinase; Pro 93.0 0.085 1.9E-06 54.9 3.6 27 330-356 3-29 (183)
488 PF01745 IPT: Isopentenyl tran 93.0 0.67 1.5E-05 50.2 10.2 26 331-356 3-28 (233)
489 smart00534 MUTSac ATPase domai 92.9 0.29 6.2E-06 51.2 7.4 21 332-352 2-22 (185)
490 TIGR00959 ffh signal recogniti 92.9 1.2 2.6E-05 53.0 13.4 26 329-354 99-124 (428)
491 PF00270 DEAD: DEAD/DEAH box h 92.9 0.63 1.4E-05 46.6 9.7 23 330-352 15-37 (169)
492 cd00227 CPT Chloramphenicol (C 92.9 0.085 1.8E-06 54.4 3.4 26 330-355 3-28 (175)
493 cd02019 NK Nucleoside/nucleoti 92.9 0.091 2E-06 46.3 3.1 22 332-353 2-23 (69)
494 PRK11664 ATP-dependent RNA hel 92.9 0.8 1.7E-05 58.6 12.6 33 313-348 7-39 (812)
495 PF02463 SMC_N: RecF/RecN/SMC 92.9 0.51 1.1E-05 50.2 9.4 40 411-450 159-199 (220)
496 PRK04301 radA DNA repair and r 92.9 0.42 9.1E-06 54.3 9.2 24 330-353 103-126 (317)
497 TIGR00968 3a0106s01 sulfate AB 92.9 0.16 3.4E-06 55.0 5.6 42 410-451 148-192 (237)
498 PLN02772 guanylate kinase 92.8 0.64 1.4E-05 54.5 10.7 24 330-353 136-159 (398)
499 cd03230 ABC_DR_subfamily_A Thi 92.8 0.39 8.4E-06 49.5 8.1 43 409-451 112-156 (173)
500 COG4608 AppF ABC-type oligopep 92.8 0.29 6.3E-06 54.5 7.5 122 330-468 40-187 (268)
No 1
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.9e-60 Score=566.57 Aligned_cols=483 Identities=29% Similarity=0.471 Sum_probs=408.3
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCC--CCCCCCCcccc
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE--DQKPCGLCREC 370 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~--~~~PCg~C~sc 370 (1018)
.+.||.+||||++|++++||++++..|.+++..++++|+|||+||+|+|||++|++||+.++|.... ...|||.|..|
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 3678999999999999999999999999999999999999999999999999999999999997643 34799999999
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
+.+..|.|+|++++++....+++.||++++.+.+.|++++++||||||+|+|+.+++|+||++||+|+.+++||++|+++
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 99999999999999988778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHH
Q 001748 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530 (1018)
Q Consensus 451 ~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~el 530 (1018)
.+++++|+|||+.++|.+++.+++..+|..+++++|+.++++++.+|++.++|++|+|+++|++++++.+.||.++|+++
T Consensus 162 ~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~V~~l 241 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVWDL 241 (620)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred hccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh------HHHHHHHHhhhh
Q 001748 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS------EARKNFFGKHTS 604 (1018)
Q Consensus 531 lg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~------~i~~~~l~r~a~ 604 (1018)
++...++.+|++++++..++...++..+++++..|.++..++.+|..+|||++.++...... ......+.++++
T Consensus 242 vg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~~A~ 321 (620)
T PRK14948 242 LGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCKLAK 321 (620)
T ss_pred hcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988754322 122355677889
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCC-CCcchhhhhhccc----cCCCCC-----C---c--
Q 001748 605 EADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESS-LDLNDSKLCLRYA----HDKDGD-----S---H-- 669 (1018)
Q Consensus 605 ~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~-~~~~~~~~~~~~~----~~~~~~-----~---~-- 669 (1018)
+++...|.++++.|.++++++|++.++++|||.++++|+..+.. ...++.....+.. .+.... . .
T Consensus 322 ~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (620)
T PRK14948 322 QINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAA 401 (620)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhccCccccccccccccccCCccccCcccccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999876531 1111111111000 000000 0 0
Q ss_pred -------ccCCCCCCcccccCCcccCCccccccccccchhhHHHHHHHHHHHhcchhHHHHHHHcCceeeeeecCceEEE
Q 001748 670 -------CTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVA 742 (1018)
Q Consensus 670 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~i~~~~~~~~l~~~L~~~g~l~~~~~~~~~~v~ 742 (1018)
...+.+.+.+...+..+...++ .........+|+++|++|++.|+.+++|+||++||+|+++ ++..++|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~ 477 (620)
T PRK14948 402 TTPSPPPAKASPPIPVPAEPTEPSPTPPA--NAANAPPSLNLEELWQQILAKLELPSTRMLLSQQAELVSL--DSNRAVI 477 (620)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCccccCHHHHHHHHHHhCCChhHHHHHHhhhheecc--cCCEEEE
Confidence 0000001111111111111111 1112334569999999999999999999999999999876 4555655
Q ss_pred EEcccchhhHhhhhhhHHHHHHHHHHHhCCeEEEEEEEcc
Q 001748 743 ELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAP 782 (1018)
Q Consensus 743 ~~~f~~~~~~~~~e~~~~~i~~~~~~~lg~~v~v~~~~~~ 782 (1018)
.| ++.|++++++++..|+++|++++|++|+|.+....
T Consensus 478 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (620)
T PRK14948 478 --AV-SPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQS 514 (620)
T ss_pred --Ee-CHHHHHHHHHhHHHHHHHHHHHhCCCeEEEEEecC
Confidence 56 88999999999999999999999999999998865
No 2
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-58 Score=547.34 Aligned_cols=481 Identities=23% Similarity=0.351 Sum_probs=389.8
Q ss_pred ccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceecc
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375 (1018)
Q Consensus 296 ~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~s 375 (1018)
+|++||||++|+||+||+++++.|++++..++++|+|||+||+|+|||++|++||+.++|.+.....|||.|.+|+.+..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 58999999999999999999999999999999999999999999999999999999999987777789999999999875
Q ss_pred --CCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcc
Q 001748 376 --GRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKL 453 (1018)
Q Consensus 376 --G~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL 453 (1018)
+.++|+++++++..++++++|++++.+.+.|+.++++||||||+|+|+.+++|+||++||+|+.+++|||+|++++++
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 467899999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh--CCccCHHHHHHHh
Q 001748 454 PRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELI 531 (1018)
Q Consensus 454 ~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~--g~~IT~edV~ell 531 (1018)
+++|+|||++++|.+++.+++..||..+++++|+.++++++.+|++.++|++|+++++|++++.+ ++.||.++|.+++
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~ll 241 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876 4689999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch--------hHHHHHHHHhhh
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC--------SEARKNFFGKHT 603 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~--------~~i~~~~l~r~a 603 (1018)
+...++.+|++++++..+|...++..+++++..|.++..|+..|..+||+++.++..... .......+.+++
T Consensus 242 g~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l~~qa 321 (584)
T PRK14952 242 GATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERMREQA 321 (584)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998874321 233446677889
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCC--CcchhhhhhccccCCC-----CCCcccC--CC
Q 001748 604 SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL--DLNDSKLCLRYAHDKD-----GDSHCTI--SP 674 (1018)
Q Consensus 604 ~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~--~~ 674 (1018)
++++.+.|.++++.+.+...+++++.+++++||+++++||.+.... +....++...+..... +...... +.
T Consensus 322 ~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~ 401 (584)
T PRK14952 322 ARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLLPSASDAESALLQRVERIETRLDMSIPANLLHNAPQAAPA 401 (584)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999765211 1111121111111000 0000000 00
Q ss_pred CC--CcccccCCccc--CCccccccccccchhhHHHHHHHHHHHhcch--hHHHHHHHcCceeeeeecCceEEEEEcccc
Q 001748 675 RD--SFKHLVRGSCV--GDKANKLGALEDYKGTLESIWKTATELCQSN--SLKTFLRKQGKLSSLHVNHGLAVAELEFHH 748 (1018)
Q Consensus 675 ~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~W~~i~~~~~~~--~l~~~L~~~g~l~~~~~~~~~~v~~~~f~~ 748 (1018)
.. .......+... ..+.............+...|.+|++.++.. ++.+||. .++++.+ .++.+++ .|..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~~~~~~~a~l~-~~~~~~~--~~~~~~i--~~~~ 476 (584)
T PRK14952 402 PSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVRSMWSTVRDKVRQRSRTTEVMLA-GATVRAL--EGNTLVL--THES 476 (584)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhcchhHHHHHh-cCEeeec--cCCEEEE--EeCc
Confidence 00 00000000000 0000001111222345677999999998743 5677885 5888765 3445554 3433
Q ss_pred hhhH---hhhhhhHHHHHHHHHHHhCCeEEEEEEEcc
Q 001748 749 RDYV---SRAEKSWKLIASTLQSVLGCNVEIRLLCAP 782 (1018)
Q Consensus 749 ~~~~---~~~e~~~~~i~~~~~~~lg~~v~v~~~~~~ 782 (1018)
..+. ...++ .+.|+++|++++|.+++|+.....
T Consensus 477 ~~~~~~~~~~~~-~~~i~~~l~~~~g~~~~v~~~~~~ 512 (584)
T PRK14952 477 APLARRLSEQRN-ADVLAEALKDALGVNWRVRCETGK 512 (584)
T ss_pred HHHHHHHhCchh-HHHHHHHHHHHhCCCeEEEEEeCC
Confidence 3333 33333 689999999999999999987764
No 3
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.7e-57 Score=540.73 Aligned_cols=483 Identities=29% Similarity=0.463 Sum_probs=393.6
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|++++||+++++.|+++++.++++|+|||+||+|||||++|++||++++|.++....|||.|..|..
T Consensus 2 ~y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 2 MYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred CcHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.++|+++++++++++++.||++++.+.+.|..++++||||||+|+|+.+++|+|+++||+||.+++||++|+.+++
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
++++|+|||+.++|.+++.+++..||+.+++++|+.++++++..|+..++|++|+|+++|+++..+ ++.||.++|.+++
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~vl 241 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVT 241 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998766 5679999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch-----hHHHHHHHHhhhhcC
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC-----SEARKNFFGKHTSEA 606 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~-----~~i~~~~l~r~a~~~ 606 (1018)
|....+.++++++++..+|...++..+.+++..|.++..++..|..+||+++.++..... .....+.+.++++.+
T Consensus 242 g~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~a~~~ 321 (559)
T PRK05563 242 GSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKELSEKL 321 (559)
T ss_pred CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999988865432 223345677788999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC---CCCCcchh----hhhhccccCCCC--CCcccCCCCCC
Q 001748 607 DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE---SSLDLNDS----KLCLRYAHDKDG--DSHCTISPRDS 677 (1018)
Q Consensus 607 s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~---~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~ 677 (1018)
+.+.|.+++..|.+++.++|++.++++.||.++++||... +..+.... ++...+...... ..+...+...+
T Consensus 322 s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (559)
T PRK05563 322 DIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASPEYDTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKE 401 (559)
T ss_pred CHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhhccCCccccCCHHHHHHHHHHHHHHHHhcccCCccccccccc
Confidence 9999999999999999999999999999999999999832 11111111 111111110000 00000000000
Q ss_pred cccccC------CcccCCcccc--ccccccchhhHHHHHHHHHHHhcch--hHHHHHHHcCceeeeeecCceEEEEEccc
Q 001748 678 FKHLVR------GSCVGDKANK--LGALEDYKGTLESIWKTATELCQSN--SLKTFLRKQGKLSSLHVNHGLAVAELEFH 747 (1018)
Q Consensus 678 ~~~~~~------~~~~~~~~~~--~~~~~~~~~~l~~~W~~i~~~~~~~--~l~~~L~~~g~l~~~~~~~~~~v~~~~f~ 747 (1018)
.....+ ......+... ..+.......+...|..|++.++.. +++++|. .|++++. +++.+++. |.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~l~-~~~~~~~--~~~~~~i~--~~ 476 (559)
T PRK05563 402 KKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNVWGEILESLKAQRKSLRALLV-NSEPVAA--SEDTVVLA--FE 476 (559)
T ss_pred ccccccccccccccCCcchhhhhhhhccHHHHHHHHHHHHHHHHHHhcccHHHHHHHh-cCeEeec--cCCEEEEE--eC
Confidence 000000 0000000000 0001112234456899999998744 5889996 5888654 45555553 43
Q ss_pred chhhH-----hhhhhhHHHHHHHHHHHhCCeEEEEEEEcc
Q 001748 748 HRDYV-----SRAEKSWKLIASTLQSVLGCNVEIRLLCAP 782 (1018)
Q Consensus 748 ~~~~~-----~~~e~~~~~i~~~~~~~lg~~v~v~~~~~~ 782 (1018)
+..++ +. +. .+.|++++++++|.+++|++....
T Consensus 477 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 514 (559)
T PRK05563 477 YEIHFEKAMLDK-EL-NDTIENILSKLLGKSVEIVAVPED 514 (559)
T ss_pred cHHHHHHHHhCh-HH-HHHHHHHHHHHhCCCeEEEEEEhh
Confidence 32221 22 22 389999999999999999998885
No 4
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-56 Score=535.89 Aligned_cols=485 Identities=26% Similarity=0.388 Sum_probs=393.8
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
+.+|++||||++|++||||+++++.|.++++.|+++|+|||+||+|+|||++|++||++++|+......|||.|..|+.+
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999987777899999999999
Q ss_pred ccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcc
Q 001748 374 SSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKL 453 (1018)
Q Consensus 374 ~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL 453 (1018)
..|.++|++++++.+..++++|+++++.+.+.|+.+++|||||||+|+|+..++|+|+++||+|+++++|||+|+++++|
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHhc
Q 001748 454 PRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIG 532 (1018)
Q Consensus 454 ~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ellg 532 (1018)
+++|+|||+.++|.+++.+++..||..+++++|+.++++++..|++.++|++|+++++|+++..+ ++.||.++|.+++|
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~llG 242 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLG 242 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999776 56899999999999
Q ss_pred cCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch------hHHHHHHHHhhhhcC
Q 001748 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC------SEARKNFFGKHTSEA 606 (1018)
Q Consensus 533 ~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~------~~i~~~~l~r~a~~~ 606 (1018)
.+..+.++++++++..+|...++..+++++..|.++..++..|..+||+++.++..... .....+.+.++++.|
T Consensus 243 ~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~~~~A~~~ 322 (576)
T PRK14965 243 VVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRAQAAAA 322 (576)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999998875332 222345677788999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCCCcc--hhhhhhccccCCCC--------CCcccCCC--
Q 001748 607 DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLN--DSKLCLRYAHDKDG--------DSHCTISP-- 674 (1018)
Q Consensus 607 s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~-- 674 (1018)
+.+.|.++++.+.+++.++|++.++++.||+++++|+.+.+..+.. ..++...+...... .+.....+
T Consensus 323 s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (576)
T PRK14965 323 DAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLAPGAPVSELLDRLEALERGAPAPPSAAWGAPTPAAPAAPPP 402 (576)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhhccccccccccCCCcccccccc
Confidence 9999999999999999999999999999999999999876432211 11111111100000 00000000
Q ss_pred --CCCcccccCCc----ccCCcccccccc--------ccchhhHHHHHHHHHHHhc--chhHHHHHHHcCceeeeeecCc
Q 001748 675 --RDSFKHLVRGS----CVGDKANKLGAL--------EDYKGTLESIWKTATELCQ--SNSLKTFLRKQGKLSSLHVNHG 738 (1018)
Q Consensus 675 --~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~l~~~W~~i~~~~~--~~~l~~~L~~~g~l~~~~~~~~ 738 (1018)
..+.....+.+ .+...+.....+ ..........|.++++.++ +..++++|. +++++.. .++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~-~~~~~~~--~~~ 479 (576)
T PRK14965 403 AAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRAFVAFVKGKKPALGASLE-QGSPLGV--SAG 479 (576)
T ss_pred ccCCCCCCCCCCcccccccccCCcccccCCcccccccccchhhhhhhHHHHHHHHHhccHHHHHHHh-cCceeee--cCC
Confidence 00000000000 000000000000 0012244558999999995 346888885 6888765 344
Q ss_pred eEEEEEccc--chhhHhhhhhhHHHHHHHHHHHhCCeEEEEEEEcc
Q 001748 739 LAVAELEFH--HRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAP 782 (1018)
Q Consensus 739 ~~v~~~~f~--~~~~~~~~e~~~~~i~~~~~~~lg~~v~v~~~~~~ 782 (1018)
.+++.++.. +...+...+. .+.|++++++++|..++|.+....
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 524 (576)
T PRK14965 480 LLEIGFPEGSFELSAMQDPDS-RAELKALAEQFFGRPTRLRITVLA 524 (576)
T ss_pred eEEEEeCchHHHHHHhcChHH-HHHHHHHHHHHhCCCeEEEEEECC
Confidence 454433321 1223334343 688999999999999999999875
No 5
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-57 Score=528.87 Aligned_cols=355 Identities=32% Similarity=0.535 Sum_probs=335.4
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+++|++||||++|+|++||++++.+|.+++..++++|+|||.||+|+|||++||+||+++||.+.....|||.|..|..
T Consensus 2 ~yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 2 SYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred chHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 35789999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.+.|++|+|+++++++++||+|++.+.+.|..+++|||||||+|||+..++|+|||+|||||.+++|||+|+++++
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g-~~IT~edV~ell 531 (1018)
++.||+|||++|+|++++.++|..+|..++.+|+|.++++++..|++.++|++|+++++|+++..++ +.||.+.|.+++
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~l 241 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDML 241 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998775 589999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh-HH----HHHHHHhhhhcC
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-EA----RKNFFGKHTSEA 606 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~-~i----~~~~l~r~a~~~ 606 (1018)
|.++.+.+.+++++++.+|...++..+++++..|.++..++..|..+++++|..+...... .+ ....+..++..+
T Consensus 242 G~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 321 (515)
T COG2812 242 GLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKELASQI 321 (515)
T ss_pred CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999977665442111 11 112466677899
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCC
Q 001748 607 DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 607 s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~ 647 (1018)
+...|.+.++.+......++.+.++++++|+++++++...+
T Consensus 322 ~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~~ 362 (515)
T COG2812 322 SVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAAP 362 (515)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999998753
No 6
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-55 Score=518.94 Aligned_cols=452 Identities=25% Similarity=0.386 Sum_probs=384.3
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|+|+|||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......|||.|..|+.
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.++|++++++++..+++++|++++.+.+.|..+++|||||||+|+|+..++|+||++||+||++++|||+|+++.+
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
++++|+|||+.++|.+++.+++..+|+.+++++|+.++++++..|++.++|++|+|+++|++++.+ ++.||.++|.+++
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~l 241 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTML 241 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998776 4689999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch-hHHHHHHHHhhhhcCCHHH
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC-SEARKNFFGKHTSEADMQK 610 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~-~~i~~~~l~r~a~~~s~~~ 610 (1018)
|.+.++.+|++++++..+|...++..+++++..|.++..++..|..++++++..+...+. .+.....+..+++.++.+.
T Consensus 242 g~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (509)
T PRK14958 242 GTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLRQLAKLLDRED 321 (509)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHHHHHHhCCHHH
Confidence 999999999999999999999999999999999999999999999999999887765432 1222345667788999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCCCcchhhhhhccccCCCCCCcccCCCCCCcccccCCcccCCc
Q 001748 611 LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDK 690 (1018)
Q Consensus 611 L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1018)
|..+++++.....+++.+.++++++|++|++++...++..... ... .+.+. . ..+ .
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~--~-~~~-----~ 377 (509)
T PRK14958 322 VQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYPSAANAI-----PET-----------ESKEA--V-VTP-----T 377 (509)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCCCccccc-----CCC-----------CCCcc--C-CCC-----C
Confidence 9999999999999999999999999999999997664210000 000 00000 0 000 0
Q ss_pred cccccccccchhhHHHHHHHHHHHhcchhHHHHHHHcCceeeeeecCceEEEEEcccchhhHhhhhhhHHHHHHHHHHHh
Q 001748 691 ANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVL 770 (1018)
Q Consensus 691 ~~~~~~~~~~~~~l~~~W~~i~~~~~~~~l~~~L~~~g~l~~~~~~~~~~v~~~~f~~~~~~~~~e~~~~~i~~~~~~~l 770 (1018)
+ .+ ....|.++++.+.-..+-..|..++.+.+. +++.+...+.-.+. ++.. ++..+.|+++|++.+
T Consensus 378 ~----~~------~~~~W~~lv~~L~l~Gl~~qLA~n~~l~~~--~~~~i~L~L~~~~~-~L~~-~~~~~~L~~ALs~~~ 443 (509)
T PRK14958 378 P----KS------SETSWPQLLSQLKLTGATLALAQQCSLKEL--TDNRLYLMLNPKQK-PLLQ-QKHIERISEALSEHF 443 (509)
T ss_pred C----CC------ccchHHHHHHHcCCchHHHHHHhhhhhhcc--cCCEEEEEEChhhh-hhcC-HHHHHHHHHHHHHHh
Confidence 0 00 122599999998755444455556666543 44444443432122 2222 344688999999999
Q ss_pred CCeEEEEEEEcc
Q 001748 771 GCNVEIRLLCAP 782 (1018)
Q Consensus 771 g~~v~v~~~~~~ 782 (1018)
|..|+|.|.+-.
T Consensus 444 G~~i~L~I~~g~ 455 (509)
T PRK14958 444 NRTITVKIDISN 455 (509)
T ss_pred CCCeEEEEEeCC
Confidence 999999998765
No 7
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1e-52 Score=514.58 Aligned_cols=350 Identities=27% Similarity=0.482 Sum_probs=328.4
Q ss_pred ccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceecc
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375 (1018)
Q Consensus 296 ~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~s 375 (1018)
.|++||||++|++||||+++++.|+++|..++++|+|||+||+|+|||++|++||+.|+|.......|||.|.+|+.+..
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 58899999999999999999999999999999999999999999999999999999999987666679999999999998
Q ss_pred C--CCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcc
Q 001748 376 G--RSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKL 453 (1018)
Q Consensus 376 G--~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL 453 (1018)
| .++|++++++...+++++||++.+.+.+.|..+++|||||||+|+|+..++|+|||+||+++.+++|||+|++.++|
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 8 78889999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh--CCccCHHHHHHHh
Q 001748 454 PRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELI 531 (1018)
Q Consensus 454 ~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~--g~~IT~edV~ell 531 (1018)
+++|+|||+.|.|.+++.+++..||.++++++|+.++++++.+|++.++|++|+++++|++++.+ .+.||.++|.+++
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~all 243 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAVALL 243 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999865 3679999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch--------hHHHHHHHHhhh
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC--------SEARKNFFGKHT 603 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~--------~~i~~~~l~r~a 603 (1018)
+......++++++++..+|...++..+++++..|.++..|+..|.++||+|+.++...+. .......+.+++
T Consensus 244 g~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~~L~~qA 323 (824)
T PRK07764 244 GVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLDRMRAQA 323 (824)
T ss_pred cCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988764321 123345677788
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccC
Q 001748 604 SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 604 ~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~ 645 (1018)
++|+...|.++++.+.++...++.+.++++.||+++++|+..
T Consensus 324 ~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll~ 365 (824)
T PRK07764 324 QRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLLP 365 (824)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999853
No 8
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-52 Score=499.52 Aligned_cols=355 Identities=26% Similarity=0.457 Sum_probs=333.0
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCC-----CCCCCCCc
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE-----DQKPCGLC 367 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~-----~~~PCg~C 367 (1018)
.+.+|++||||++|++||||+++++.|++++..++++|+|||+||+|+|||++|++||+.++|..+. ...|||.|
T Consensus 2 sy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred chHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 4678999999999999999999999999999999999999999999999999999999999997542 34699999
Q ss_pred cccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEe
Q 001748 368 RECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaT 447 (1018)
..|+.+..|.|+|++++++....++++||++++.+.+.|..++++||||||+|+|+..++|+||++||+|+.+++|||+|
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHH
Q 001748 448 PELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSL 526 (1018)
Q Consensus 448 n~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~ed 526 (1018)
+++.+++++|+|||+.++|.+++.+++..||+.++.++|+.++++++.+|++.++|++|+++++++++..+ ++.||.++
T Consensus 162 td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~~ 241 (618)
T PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAA 241 (618)
T ss_pred CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766 46799999
Q ss_pred HHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh----HHHHHHHHhh
Q 001748 527 AYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS----EARKNFFGKH 602 (1018)
Q Consensus 527 V~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~----~i~~~~l~r~ 602 (1018)
|+++++...++.+|++++++..+|...++..+++++..|.++..++..|..++|+++..+...... ......+.++
T Consensus 242 V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (618)
T PRK14951 242 VRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVARL 321 (618)
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887664421 1233456778
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCC
Q 001748 603 TSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 603 a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~ 647 (1018)
++.++.+.|..+++++......++...++++.+|++|++|+...+
T Consensus 322 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~~~~ 366 (618)
T PRK14951 322 AALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAFKP 366 (618)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCCC
Confidence 899999999999999999999999999999999999999997664
No 9
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3e-52 Score=496.86 Aligned_cols=482 Identities=25% Similarity=0.391 Sum_probs=387.0
Q ss_pred CCCCCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCC-----CCC
Q 001748 289 TYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED-----QKP 363 (1018)
Q Consensus 289 ~~~~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~-----~~P 363 (1018)
+....+++|++||||++|++|+||+.+++.|.+++..|+++|+|||+||+|+|||++|++||+.++|..+.. ..|
T Consensus 6 ~~~~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 6 AAATPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred CCCccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 344568999999999999999999999999999999999999999999999999999999999999986533 269
Q ss_pred CCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEE
Q 001748 364 CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVF 443 (1018)
Q Consensus 364 Cg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vif 443 (1018)
|+.|..|+.+..|.|+|++++++.+..++++||++++.+.+.|+++++|||||||+|+|+..++|+||++||+|+++++|
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~f 165 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKF 165 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEE
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC-Ccc
Q 001748 444 VMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKI 522 (1018)
Q Consensus 444 ILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g-~~I 522 (1018)
||+|++.++++++|+|||++++|.+++.+++..||.++++++|+.++++++++|++.++|++|+++++|++++.++ +.|
T Consensus 166 Il~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~g~I 245 (598)
T PRK09111 166 IFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEV 245 (598)
T ss_pred EEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987664 589
Q ss_pred CHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc------hhHHHH
Q 001748 523 TLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED------CSEARK 596 (1018)
Q Consensus 523 T~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~------~~~i~~ 596 (1018)
|.++|.++++...+..+|++++++..+|...++..+++++..|.+|..++.+|.+++++++.+|.... ..+...
T Consensus 246 t~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~p~~~ 325 (598)
T PRK09111 246 TAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAER 325 (598)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988876432 223333
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCCCcchhhhhhccccCCC---CC--Ccc-
Q 001748 597 NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKD---GD--SHC- 670 (1018)
Q Consensus 597 ~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~- 670 (1018)
..+.++++++++..|.++++.|.+++..+|++.++++.+|++|++||.... +.+.++.+......... +. ...
T Consensus 326 ~kl~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~~~-lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (598)
T PRK09111 326 TRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYAAD-LPTPDEALRRLQEGPPSPGGGGGGPPGG 404 (598)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcc-CCCHHHHHHHHHhccCCCCCCCCCCCCC
Confidence 456778899999999999999999999999999999999999999998652 22323322211110000 00 000
Q ss_pred ---cCCCCCC-------cccccCCccc-----CCcccccc--c----cccchhhHHHHHHHHHHHhcch---hHHHHHHH
Q 001748 671 ---TISPRDS-------FKHLVRGSCV-----GDKANKLG--A----LEDYKGTLESIWKTATELCQSN---SLKTFLRK 726 (1018)
Q Consensus 671 ---~~~~~~~-------~~~~~~~~~~-----~~~~~~~~--~----~~~~~~~l~~~W~~i~~~~~~~---~l~~~L~~ 726 (1018)
..+.... .....++... .......+ . .......+ .-|..+++.+..+ .|+..|..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 483 (598)
T PRK09111 405 GGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRL-NSFEDIVALAEEKRDIKLKAAVER 483 (598)
T ss_pred CCCCCCCCcccccccccccCCCCCccccccccccccccccccccccccccccccc-cCHHHHHHHHHhcCcHHHHHHHHh
Confidence 0000000 0000000000 00000000 0 00011111 4699999988754 57777877
Q ss_pred cCceeeeeecCceEEEEEcccchhhHhhhhhhHHHHHHHHHHHhCCeEEEEEEE
Q 001748 727 QGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLC 780 (1018)
Q Consensus 727 ~g~l~~~~~~~~~~v~~~~f~~~~~~~~~e~~~~~i~~~~~~~lg~~v~v~~~~ 780 (1018)
..+|+. +..|...+.+ .. .........|.+.+++.+|..+.|.+.-
T Consensus 484 ~~~~~~--~~~g~~~~~~--~~----~~~~~~~~~l~~~l~~~t~~~w~v~~~~ 529 (598)
T PRK09111 484 DVRLVR--FEPGRLEFAL--AP----GAPRDLAQRLARKLEEWTGRRWVVSVSR 529 (598)
T ss_pred cceEEe--ecCCeEEEEE--CC----CCChHHHHHHHHHHHHHhCCceEEEEec
Confidence 777765 4566554322 11 1223345679999999999999998853
No 10
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.8e-53 Score=491.11 Aligned_cols=355 Identities=26% Similarity=0.433 Sum_probs=328.2
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
..+.+|++||||++|+|+|||++++..|.+++..++++|+|||+||+|+|||++|++||+.++|..+....||+.|..|+
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~ 451 (1018)
.+..|.+.++++++++...+++.+|++++.+.+.|..++++||||||+|+|+.+++|+||++||+|+.+++||++|++++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 99999999999999988889999999999999889889999999999999999999999999999999999999999999
Q ss_pred cchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHH
Q 001748 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYEL 530 (1018)
Q Consensus 452 kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~el 530 (1018)
+++++|+|||+++.|.+++.+++..+|++++.++|+.++++++.+|++.++|++|+|+++|++++.. ++.||.+.|.++
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~ 242 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKM 242 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997654 568999999999
Q ss_pred hccCChhHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch------hHHHHHHHHhhh
Q 001748 531 IGIVSDDELLDLLDLALSSDT-SNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC------SEARKNFFGKHT 603 (1018)
Q Consensus 531 lg~v~ee~If~Lldail~~d~-~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~------~~i~~~~l~r~a 603 (1018)
+|....+.++++++++..+|. ..++..+.+++..|.++..++..|..++|+++.++..... .+-....+..++
T Consensus 243 lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
T PRK14956 243 IGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDF 322 (484)
T ss_pred hCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHHHH
Confidence 999999999999999999875 6899999999999999999999999999999988765221 222345667788
Q ss_pred hcCCHHHHHHHHHHHH----HH-HHHHhcCCChHHHHHHHHHHhccCC
Q 001748 604 SEADMQKLSRALKILS----ET-EKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 604 ~~~s~~~L~~aL~iLs----ea-e~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
+.++...|.+++..+. .+ +.++|++.+++++||+++++||.+.
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~~~ 370 (484)
T PRK14956 323 ENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVEEL 370 (484)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhccc
Confidence 9999999998876653 32 4567999999999999999999877
No 11
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.8e-52 Score=485.44 Aligned_cols=447 Identities=24% Similarity=0.374 Sum_probs=372.9
Q ss_pred ccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceecc
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375 (1018)
Q Consensus 296 ~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~s 375 (1018)
.|++||||++|+|+|||+++++.|.+++..++++|+|||+||+|+||||+|++||+.++|.......|||.|..|+.+..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchH
Q 001748 376 GRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPR 455 (1018)
Q Consensus 376 G~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~ 455 (1018)
+.++|++++++++..++++||++++.+.+.|+.+++|||||||+|+|+.+++|+|+++||+||++++|||+|++++++++
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV 161 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHhccC
Q 001748 456 SALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGIV 534 (1018)
Q Consensus 456 tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ellg~v 534 (1018)
+|+|||+.++|.+++.+++..||..+++++|+.++++++++|++.++|++|+++++|++++.+ ++.||.++|.+++|.+
T Consensus 162 tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~llg~~ 241 (491)
T PRK14964 162 TIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCV 241 (491)
T ss_pred HHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999876 5689999999999999
Q ss_pred ChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc----hhHHHHHHHHhhhhcCCHHH
Q 001748 535 SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED----CSEARKNFFGKHTSEADMQK 610 (1018)
Q Consensus 535 ~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~----~~~i~~~~l~r~a~~~s~~~ 610 (1018)
..+.+|+++++++.+|...++..+++++..| ++..++..|..++++++..+.... ..+.....+.+++. ++...
T Consensus 242 ~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 319 (491)
T PRK14964 242 DKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKI-GSTIF 319 (491)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhC-CCHHH
Confidence 9999999999999999999999999999865 799999999999999887664432 12223355666677 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCCCcchhhhhhccccCCCCCCcccCCCCCCcccccCCcccCCc
Q 001748 611 LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDK 690 (1018)
Q Consensus 611 L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1018)
|.++++.|.+...+++.+.++++.+|+++++||.+.. +.+.++.+..... .+.. .++. ... .
T Consensus 320 l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~~~~-~~~~~~~~~~~~~---~~~~---~~~~----~~~--~----- 381 (491)
T PRK14964 320 LSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYLSD-LPSPQQIIKKILS---KSVE---QAPR----QIK--V----- 381 (491)
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCC-CCCHHHHHHHHHh---cCCC---CCCc----ccc--C-----
Confidence 9999999999999999999999999999999998763 2122221111111 0000 0000 000 0
Q ss_pred cccccccccchhhHHHHHHHHHHHhcch---hHHHHHHHcCceeeeeecCce-EEEEEcccchhhHhhhhhhHHHHHHHH
Q 001748 691 ANKLGALEDYKGTLESIWKTATELCQSN---SLKTFLRKQGKLSSLHVNHGL-AVAELEFHHRDYVSRAEKSWKLIASTL 766 (1018)
Q Consensus 691 ~~~~~~~~~~~~~l~~~W~~i~~~~~~~---~l~~~L~~~g~l~~~~~~~~~-~v~~~~f~~~~~~~~~e~~~~~i~~~~ 766 (1018)
+ .+.+ . .-|..+++.++.+ .++..+...-+++. +..|. ..+...- .........+.+.+
T Consensus 382 ~--~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~l 444 (491)
T PRK14964 382 N--NKQQ-----N--YDFDKLLQLLKSNNMIDLYNQLCSSLQEID--CKSDYTLNIKANS------QLDSNFCNDLKNFL 444 (491)
T ss_pred C--CCCc-----c--cCHHHHHHHHHhcccHHHHHHHHhcceeEe--ecCCcceEEeeCC------CCChHHHHHHHHHH
Confidence 0 0011 1 3688888877644 46666665555554 44554 2221111 11223456788999
Q ss_pred HHHhCCeEEEEEE
Q 001748 767 QSVLGCNVEIRLL 779 (1018)
Q Consensus 767 ~~~lg~~v~v~~~ 779 (1018)
++.+|..+.|.+.
T Consensus 445 ~~~t~~~w~~~~~ 457 (491)
T PRK14964 445 NQLTNKKWNICID 457 (491)
T ss_pred HHHhCCCeEEEec
Confidence 9999999998665
No 12
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.5e-52 Score=496.98 Aligned_cols=485 Identities=29% Similarity=0.437 Sum_probs=390.9
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCC-CCCCCCCCccccce
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL-EDQKPCGLCRECAL 372 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~-~~~~PCg~C~sc~~ 372 (1018)
.+.|++||||++|++||||+++++.|++++..++++|+|||+||+|+|||++|++||+.++|... ....|||.|..|+.
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999875 34579999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.++|++++++....++++++++++.+.+.|++++++||||||+|+|+.+++++|+++||+++.+++||+++++.++
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 99999999999988777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
++++|+|||+++.|.+++..++..+|..++.++|+.++++++.+|+..++||+|.++++|+++..+ ++.||.++|++++
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~ll 242 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLL 242 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999876 5689999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc-----hhHHHHHHHHhhhhcC
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED-----CSEARKNFFGKHTSEA 606 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~-----~~~i~~~~l~r~a~~~ 606 (1018)
+...++.+|+|++++..+|...++..+++++..|.++.+|+..|.++||+++.++.... ......+.+.+++++|
T Consensus 243 ~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa~~~ 322 (585)
T PRK14950 243 GISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVSQIA 322 (585)
T ss_pred cCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998875432 2334556778889999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCC-C----c--------chhhhhhc-------cccCCCC
Q 001748 607 DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSL-D----L--------NDSKLCLR-------YAHDKDG 666 (1018)
Q Consensus 607 s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~-~----~--------~~~~~~~~-------~~~~~~~ 666 (1018)
+...|.+++..|.++|+++|++.++++.||++|++++...... . + .......+ .+.....
T Consensus 323 s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (585)
T PRK14950 323 NLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEP 402 (585)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCCcccccccccccCCcCccCCCCCCCCcccccccccCCcccc
Confidence 9999999999999999999999888999999999998653100 0 0 00000000 0000000
Q ss_pred CCcccC---CCCC----Cccc-------c------cCCcccCCc----c---ccccccccchhhHHHHHHHHHHHhcch-
Q 001748 667 DSHCTI---SPRD----SFKH-------L------VRGSCVGDK----A---NKLGALEDYKGTLESIWKTATELCQSN- 718 (1018)
Q Consensus 667 ~~~~~~---~~~~----~~~~-------~------~~~~~~~~~----~---~~~~~~~~~~~~l~~~W~~i~~~~~~~- 718 (1018)
...... +.+. +.++ . .+....... + .....+.+....++..|.+|++.++..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 482 (585)
T PRK14950 403 VRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLEAIWKQILRDVPPRS 482 (585)
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCcCCCCCCCCCCcccccCCCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 000000 0000 0000 0 000000000 0 000112233446788999999999854
Q ss_pred -hHHHHHHHcCceeeeeecCceEEEEEccc-chhhHhhhhhhHHHHHHHHHHHhCCeEEEEEEEc
Q 001748 719 -SLKTFLRKQGKLSSLHVNHGLAVAELEFH-HRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCA 781 (1018)
Q Consensus 719 -~l~~~L~~~g~l~~~~~~~~~~v~~~~f~-~~~~~~~~e~~~~~i~~~~~~~lg~~v~v~~~~~ 781 (1018)
.+.++|...++++. ++++.+++.+.+. +...++..++ ...|++++.+++|.++.|+..-.
T Consensus 483 ~~~~~~~~~~a~p~~--~~~~~l~l~~~~~~~~~~~~~~~~-r~~i~~~l~~~~g~~~~v~c~~~ 544 (585)
T PRK14950 483 PAVQALLSSGVRPVS--VEKNTLTLSFKSKFHKDKIEEPEN-RKITEELLSNFVGKTCAVRCTIE 544 (585)
T ss_pred HHHHHHHhCCCeeee--ecCCEEEEecCcHHHHHHhhchHH-HHHHHHHHHHHhCCceEEEEecC
Confidence 46677765467754 4677676644332 3344455555 68999999999999999998444
No 13
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-51 Score=484.61 Aligned_cols=469 Identities=27% Similarity=0.411 Sum_probs=377.2
Q ss_pred ccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceecc
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375 (1018)
Q Consensus 296 ~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~s 375 (1018)
.|++||||++|+|++||++++..|.+++..++++|+|||+||+|+|||++|++||+.++|..+ ...|||.|..|..+..
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~-~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGE-DPKPCGECESCLAVRR 81 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCC-CCCCCCcChhhHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999999765 3469999999999999
Q ss_pred CCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchH
Q 001748 376 GRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPR 455 (1018)
Q Consensus 376 G~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~ 455 (1018)
+.|+|+.++++....+++.+|++.+.+...|+.++++||||||+|.++..++++|+++|++++.+++||++++.+.++.+
T Consensus 82 ~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 99999999998888889999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCC
Q 001748 456 SALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVS 535 (1018)
Q Consensus 456 tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ 535 (1018)
+|.|||++++|.+++.+++..||+++++++|+.++++++.+|++.++|++|.++++|+++..+++.||.++|.++++...
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~ 241 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPP 241 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999988877999999999999999
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHHHHH
Q 001748 536 DDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRAL 615 (1018)
Q Consensus 536 ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~~aL 615 (1018)
++++|++++++..++...++..+++|+..|++|..|+..|.+++|+++.++....... . ..+....+.+++
T Consensus 242 ~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~-~--------~~~~~~~~~~~l 312 (504)
T PRK14963 242 QERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGP-R--------LEGAEPRLLAAM 312 (504)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCccc-c--------cccCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999886644321 0 123556789999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhccCCC-----------CCCcc----hhhhhhccccCCCCCCccc---CCCCCC
Q 001748 616 KILSETEKQLRMSKHQTTWLTVALLQLSSSES-----------SLDLN----DSKLCLRYAHDKDGDSHCT---ISPRDS 677 (1018)
Q Consensus 616 ~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~-----------~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~ 677 (1018)
+.|.+.++++..+.+ +..||++|+++|.+.. .++.+ ..++...+.....|..... .++..+
T Consensus 313 ~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~le~~~~~~~~~~~~~~~~~~~~ 391 (504)
T PRK14963 313 TALDEQMERFARRSD-ALSLELALLHALLALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAP 391 (504)
T ss_pred HHHHHHHHHHHhccc-hhHHHHHHHHHHhhhccCCccccccccccCCCHHHHHHHHHHHHHHhccCCCCccccCCCCCCC
Confidence 999999999877765 5779999999997540 01111 1222222222222211100 000000
Q ss_pred c---cccc--CCcccCC---ccccccccccchhhHHHHHHHHHHHhcchhHHHHHHHcCceeeeeecCceEEE-EEcccc
Q 001748 678 F---KHLV--RGSCVGD---KANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVA-ELEFHH 748 (1018)
Q Consensus 678 ~---~~~~--~~~~~~~---~~~~~~~~~~~~~~l~~~W~~i~~~~~~~~l~~~L~~~g~l~~~~~~~~~~v~-~~~f~~ 748 (1018)
. .... ++..... +.....++......+...|.+|++.+ ++.+++||++ +.+ .+.++.+++ +.+..+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~ 466 (504)
T PRK14963 392 LPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLALRWRDVLAAL-KMQLRAFLRE-ARP---HVEEGYVSLTFPERAS 466 (504)
T ss_pred ccccCcccCCCCCccccccccCCCccCChhHHHHHHHHHHHHHHHh-hHHHHHHHHh-hcc---cCCCCeEEEEecCccc
Confidence 0 0000 0000000 00000112223346677899999987 5679999976 444 345554333 222223
Q ss_pred hhhHhhhhhhHHHHHHHHHHHhCCeEEEEEEEcc
Q 001748 749 RDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAP 782 (1018)
Q Consensus 749 ~~~~~~~e~~~~~i~~~~~~~lg~~v~v~~~~~~ 782 (1018)
..+++..+ .++.|++.+++++| +|+|++....
T Consensus 467 ~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 498 (504)
T PRK14963 467 FHYKQAQK-KLAELAALVREVFG-PETVELILPE 498 (504)
T ss_pred hhhhhhHH-HHHHHHHHHHHHhC-CeEEEEEecC
Confidence 45556655 48999999999999 9999988765
No 14
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.9e-51 Score=481.51 Aligned_cols=449 Identities=26% Similarity=0.371 Sum_probs=379.5
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCC----CCCCCCCc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE----DQKPCGLC 367 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~----~~~PCg~C 367 (1018)
..+.+|++||||++|+|++||++++..|.+++..++++|+|||+||+|+|||++|++||++++|..+. ...||+.|
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999997643 34799999
Q ss_pred cccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEe
Q 001748 368 RECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaT 447 (1018)
..|..+..+.|+|+.++++++..++++++++++.+.+.|++++++||||||+|+|+..++++|+++||+|+++++||++|
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC----CccC
Q 001748 448 PELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG----KKIT 523 (1018)
Q Consensus 448 n~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g----~~IT 523 (1018)
+++++++++|+|||++++|.+++.+++..||+.+++++|+.++++++++|++.++|++|+|+++|++++.++ +.||
T Consensus 166 te~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It 245 (507)
T PRK06645 166 TEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIIS 245 (507)
T ss_pred CChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996653 3799
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh----HHHHHHH
Q 001748 524 LSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS----EARKNFF 599 (1018)
Q Consensus 524 ~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~----~i~~~~l 599 (1018)
.++|.++++...++++|+|++++..+|...++..+++++..|++|..++..|..++|.++.+|...... +.....+
T Consensus 246 ~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~~~~ 325 (507)
T PRK06645 246 PQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDRT 325 (507)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887654321 1223566
Q ss_pred HhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCCCcchhhhhhccccCCCCCCcccCCCCCCcc
Q 001748 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFK 679 (1018)
Q Consensus 600 ~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1018)
..++..++...|.++++++.+...+++.+.++++++|++|++|+....- ++ +. .. .+... +....
T Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~~~l-p~----~~--~~---~~~~~---~~~~~-- 390 (507)
T PRK06645 326 KSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTSL-PL----LT--DF---DGNNQ---NLNQS-- 390 (507)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhccC-CC----cc--cc---cCCCC---CCCCC--
Confidence 6778899999999999999999999999999999999999999987621 11 00 00 00000 00000
Q ss_pred cccCCcccCCccccccccccchhhHHHHHHHHHHHhcch---hHHHHHHHcCceeeeeecCceEEEEEcccchhhHhhhh
Q 001748 680 HLVRGSCVGDKANKLGALEDYKGTLESIWKTATELCQSN---SLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAE 756 (1018)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~i~~~~~~~---~l~~~L~~~g~l~~~~~~~~~~v~~~~f~~~~~~~~~e 756 (1018)
+ .+ ...+. .-|..+++.+..+ .|+..|...-+|+. +..|...+... +. ..
T Consensus 391 -----~----~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~----~~ 443 (507)
T PRK06645 391 -----I----NP--EIKKK-------FEIVDFLEYLYKNNEIDIYYFLLNHTELKN--LSDNRLEFVSL---EV----TS 443 (507)
T ss_pred -----C----CC--CCCcc-------cCHHHHHHHHHhcccHHHHHHHHhcceeee--ecCCeEEEEeC---CC----cH
Confidence 0 00 00110 2388888877644 57777766655554 45665543221 11 23
Q ss_pred hhHHHHHHHHHHHhCCeEEEEEEEcc
Q 001748 757 KSWKLIASTLQSVLGCNVEIRLLCAP 782 (1018)
Q Consensus 757 ~~~~~i~~~~~~~lg~~v~v~~~~~~ 782 (1018)
+....|.+.+++.+|..+.|.+.-.+
T Consensus 444 ~~~~~l~~~l~~~t~~~w~~~~~~~~ 469 (507)
T PRK06645 444 KIKKQIEDLLAAFTNEKFEIIIIKEQ 469 (507)
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCCC
Confidence 45667999999999999999776443
No 15
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-51 Score=486.34 Aligned_cols=470 Identities=24% Similarity=0.374 Sum_probs=384.9
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......|||.|..|..
T Consensus 2 ~~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 2 SYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred CcHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.++|++++++....+++.+|++++.+.+.|..++++||||||+|+|+.+++|+||++||+||.+++|||+|+++++
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k 161 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
++++|+|||+.++|.+++.+++..+|.++++++|+.++++++..|++.++|++|+++++++++..+ ++.|+.++|.+++
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v~~~~ 241 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAML 241 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998766 4689999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh---HHHHHHHHhhhhcCCH
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS---EARKNFFGKHTSEADM 608 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~---~i~~~~l~r~a~~~s~ 608 (1018)
+...++.+|++++++..++...++..++++...|.++..++..|..++||++..+...... ......+.+++.+++.
T Consensus 242 ~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~ 321 (527)
T PRK14969 242 GAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAKRLSP 321 (527)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999988754321 1124567788899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCCCcchhhhhhccccCCCCCCcccCCCCCCcccccCCcccC
Q 001748 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVG 688 (1018)
Q Consensus 609 ~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1018)
+.|..+++++.+....++.+.++++.+|++|++++...+.... ..........+.. .+..+.....+..+..
T Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 393 (527)
T PRK14969 322 EDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFRPSEQD-SGAGRAPGAVPGV-------NRTRAVPTAAPAAPAA 393 (527)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhccCCCCCC-cCCCCCCCCCCCC-------CCCCCCCCCCCCCccC
Confidence 9999999999999999999999999999999999987653211 0000000000000 0000000000000000
Q ss_pred CccccccccccchhhHHHHHHHHHHHhc-chhHHHHHHHcCceeeeeecCceEEEEEcccchhhHhhhhhhHHHHHHHHH
Q 001748 689 DKANKLGALEDYKGTLESIWKTATELCQ-SNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQ 767 (1018)
Q Consensus 689 ~~~~~~~~~~~~~~~l~~~W~~i~~~~~-~~~l~~~L~~~g~l~~~~~~~~~~v~~~~f~~~~~~~~~e~~~~~i~~~~~ 767 (1018)
..+ .+. .....-|..+++.+. ++..+++. .++.+.+. .++.+...+.-.+... .. ++..+.|++++.
T Consensus 394 ~~~----~~~---~~~~~~W~~lv~~L~l~g~~~qLA-~n~~l~~~--~~~~v~L~l~~~~~~L-~~-~~~~~~L~~ALs 461 (527)
T PRK14969 394 ATP----SDR---QSFNGNWRALVDQLKLSGLARELA-QNCELKSF--SEDRIELRVPEAHKHL-LD-KPYQDKLQAALE 461 (527)
T ss_pred CCC----CCC---CcccccHHHHHHHcCCchHHHHHH-Hhhhhhcc--cCCEEEEEeChhhhhh-cC-HHHHHHHHHHHH
Confidence 000 000 011125999999886 34566655 35655443 4444444443212222 22 333678999999
Q ss_pred HHhCCeEEEEEEEcc
Q 001748 768 SVLGCNVEIRLLCAP 782 (1018)
Q Consensus 768 ~~lg~~v~v~~~~~~ 782 (1018)
+.+|..++|.|.+-.
T Consensus 462 ~~~G~~~~l~I~~g~ 476 (527)
T PRK14969 462 QHFGRPVQLIFSLGG 476 (527)
T ss_pred HHhCCCeEEEEEeCC
Confidence 999999999998765
No 16
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.9e-51 Score=482.66 Aligned_cols=483 Identities=21% Similarity=0.337 Sum_probs=381.5
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......|||.|..|..
T Consensus 2 ~y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred CchhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999988777789999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..+.++|++++++....++++++++++.+.+.|+.++++||||||+|+|+..++++||++||+||++++||++|++..+
T Consensus 82 i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~k 161 (546)
T PRK14957 82 INNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHK 161 (546)
T ss_pred HhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhh
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
++++|+|||+.++|.+++.+++..||..+++++|+.++++++.+|+..++||+|+++++|++++.+ ++.||.++|++++
T Consensus 162 il~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~~l 241 (546)
T PRK14957 162 IPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQML 241 (546)
T ss_pred hhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765 6789999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHhcccccchh---HHHHHHHHhhhhcCC
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLA-NLIMDILAGKCLEDCS---EARKNFFGKHTSEAD 607 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~-~~LRdLL~~K~~~~~~---~i~~~~l~r~a~~~s 607 (1018)
+....+.+|++++++..+|...++..++++...|.+...++..|. -++| ++.++...... ......+.+++.+++
T Consensus 242 ~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r-~~~~~~~~~~~~~~~~~~~~i~~~a~~~s 320 (546)
T PRK14957 242 GIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFA-CCIYSFTQSLDAVNDIDVDIINNILAKIS 320 (546)
T ss_pred ccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHhcccccccchhhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999998 5555 66565544321 123357778889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCCCcchhhhhhccccCCC-CC---CcccCCCCC-Cccccc
Q 001748 608 MQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKD-GD---SHCTISPRD-SFKHLV 682 (1018)
Q Consensus 608 ~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~ 682 (1018)
.+.|..+++++.++...|+.+.++++.+|++|++|+...++..............+.. .. ......... +.....
T Consensus 321 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (546)
T PRK14957 321 IEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAFQKKNLIDKTQTSKSNISPIVSKNDINLLKNTFKSEQPKQTVK 400 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCCcccccccCCCCccccccccccccccccccccccCCC
Confidence 9999999999999999999999999999999999998765322110000000000000 00 000000000 110000
Q ss_pred CCcccCCccccccccccchhhHHHHHHHHHHHhcch-hHHHHHHHcCceeeeeecCceEEEEEcccchhhHhhhhhhHHH
Q 001748 683 RGSCVGDKANKLGALEDYKGTLESIWKTATELCQSN-SLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKL 761 (1018)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~W~~i~~~~~~~-~l~~~L~~~g~l~~~~~~~~~~v~~~~f~~~~~~~~~e~~~~~ 761 (1018)
+.+ ...+.............+.-|..++..++-. ..++ |-+++.+.+. +++..+..+.-.+..+..........
T Consensus 401 ~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (546)
T PRK14957 401 AVV--AQNNDSTASENTQEQSLDKKWFNLLNRIKLKGFTKT-LAFNSHLISD--NSETFVIHLNEDAKKILELDPQSIAK 475 (546)
T ss_pred CCC--ccCCCCCCCCCCCCCcccCCHHHHHHHhcccHHHHH-HHhcchhhcc--cCCeEEEEeCcchHHHhccChhHHHH
Confidence 000 0000000000000001134599999998744 4444 4456777654 44444444443333443321233567
Q ss_pred HHHHHHHHhCCeEEEEEEEcc
Q 001748 762 IASTLQSVLGCNVEIRLLCAP 782 (1018)
Q Consensus 762 i~~~~~~~lg~~v~v~~~~~~ 782 (1018)
|+.++++.+|+.+ |++.+..
T Consensus 476 l~~~l~~~~~~~~-~~~~~~~ 495 (546)
T PRK14957 476 LQASISEYLNNPS-FRLDIKN 495 (546)
T ss_pred HHHHHHHHcCCCc-eEeecCc
Confidence 9999999999999 8887765
No 17
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.8e-51 Score=487.84 Aligned_cols=355 Identities=27% Similarity=0.447 Sum_probs=332.2
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|++||||++++..|.+++..|+++|+|||+||+|+|||++|++||+.++|.......|||.|..|+.
T Consensus 2 sy~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 2 SYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999987667789999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.++|++++++....+++++|++++.+.+.|..++++||||||+|+|+..++|+|||+||+||++++||++|+++++
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 99999999999998877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
|+++|+|||+.|.|.+++.+++..+|..+++++|+.++++++..|+..++|++|+|+++++++... ++.||.++|.+++
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v~~~l 241 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAML 241 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997665 5689999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh----HHHHHHHHhhhhcCC
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS----EARKNFFGKHTSEAD 607 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~----~i~~~~l~r~a~~~s 607 (1018)
+..+.+.++++++++..+|...++..+.+++..|.++..++..|..+||+++..+...... .-....+..++.+++
T Consensus 242 g~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l~~la~~~s 321 (647)
T PRK07994 242 GTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLRELARTLP 321 (647)
T ss_pred ccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHHHHHHHhCC
Confidence 9998889999999999999999999999999999999999999999999999887654321 111236777889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCC
Q 001748 608 MQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 608 ~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~ 647 (1018)
.+.|..+++++.++..+|+.+.++++.||+++++|....+
T Consensus 322 ~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~~P 361 (647)
T PRK07994 322 PEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAFHP 361 (647)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999976553
No 18
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.4e-51 Score=487.62 Aligned_cols=354 Identities=29% Similarity=0.499 Sum_probs=332.1
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCC--------CCCC
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED--------QKPC 364 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~--------~~PC 364 (1018)
.+.++++||||++|++++||++++..|++++..|+++|+|||+||+|+|||++|++||+.++|+.... ..||
T Consensus 2 ~~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 2 SYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CcHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999975432 3699
Q ss_pred CCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEE
Q 001748 365 GLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFV 444 (1018)
Q Consensus 365 g~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifI 444 (1018)
|.|++|+.+..|.++|+.++++....++++|+++.+.+...|++++++||||||+|.|+.+++|+|+++||+|+++++||
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~I 161 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFI 161 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 99999999999999999999988878899999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh------
Q 001748 445 MITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL------ 518 (1018)
Q Consensus 445 LaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~------ 518 (1018)
++|++.++++++|+|||+.++|.+++.+++..||.++++++|+.++++++++|+..++|++|.++++|+++..+
T Consensus 162 L~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~ 241 (620)
T PRK14954 162 FATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEA 241 (620)
T ss_pred EEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCccCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch-----hH
Q 001748 519 GKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC-----SE 593 (1018)
Q Consensus 519 g~~IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~-----~~ 593 (1018)
++.||.++|.++++...++++|+|++++..++...++..+++++..|+++..|+..|.++||+++.++..... ..
T Consensus 242 ~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~~ 321 (620)
T PRK14954 242 EKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPE 321 (620)
T ss_pred CCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccCCH
Confidence 3579999999999999999999999999999999999999999999999999999999999999988865432 12
Q ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 594 i~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
.....+.+++++++...|.++++.+.+++.+||++.++++.||++|++++.+.
T Consensus 322 ~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 322 SVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 33566777889999999999999999999999999999999999999999865
No 19
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.9e-51 Score=483.17 Aligned_cols=354 Identities=26% Similarity=0.488 Sum_probs=334.9
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|+|||||+++++.|++++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|+.
T Consensus 2 sy~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 2 AYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred cchhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999998878889999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.++|++++++....+++.||++++.+.+.|+.++++||||||+|+|+..++|+||++||+++.+++|||+|+++.+
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g-~~IT~edV~ell 531 (1018)
++.+|+|||+.|.|.+++.+++..||.++++++|+.++++++..|++.++|++|+++++|++++.++ +.|+.++|.+++
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lL 241 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMI 241 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987764 689999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch---hHHHHHHHHhhhhcCCH
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC---SEARKNFFGKHTSEADM 608 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~---~~i~~~~l~r~a~~~s~ 608 (1018)
+...++.+|+|++++..+|...++..+++++..|.++..++..|..++++++.++..... .......+.+++..++.
T Consensus 242 G~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 321 (709)
T PRK08691 242 GAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTISG 321 (709)
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999999888765331 12234677888899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 609 ~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
+.|..+++++.+....++.+.++++.||++|++|+...
T Consensus 322 ~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~~ 359 (709)
T PRK08691 322 EQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFA 359 (709)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998754
No 20
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8e-52 Score=491.22 Aligned_cols=355 Identities=30% Similarity=0.485 Sum_probs=334.2
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|+|||||+++++.|++++..++++|.|||+||+|+|||++|++||+.++|+......|||.|..|+.
T Consensus 2 sY~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 2 TYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred ccHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999998777889999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.+.|++++++...+++++|+++++.+.+.|..+++|||||||+|+|+..++|+|||+||+++.+++|||+|+++++
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
|+++|+|||+.|+|.+++.+++..+|++++.+||+.++++++..|++.++|++|+++++|++...+ ++.|+.+.|.+++
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~L 241 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGML 241 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999997655 4689999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh---HHHHHHHHhhhhcCCH
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS---EARKNFFGKHTSEADM 608 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~---~i~~~~l~r~a~~~s~ 608 (1018)
|..+.+.+++++++++.+|...++..+++++..|.+...++..|..+|++++..+...... ......+.+++..++.
T Consensus 242 G~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~s~ 321 (830)
T PRK07003 242 GALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSP 321 (830)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999999998876553311 1123467778899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCC
Q 001748 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 609 ~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~ 647 (1018)
+.|..+++++...+..++...++++.+|++|++|+.+.+
T Consensus 322 ~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~~p 360 (830)
T PRK07003 322 EQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFEP 360 (830)
T ss_pred HHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999998774
No 21
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-51 Score=486.15 Aligned_cols=353 Identities=27% Similarity=0.428 Sum_probs=333.8
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
+.+|++||||++|+++|||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|..+....|||.|.+|..+
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999988788899999999999
Q ss_pred ccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcc
Q 001748 374 SSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKL 453 (1018)
Q Consensus 374 ~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL 453 (1018)
..|.++|+++++++...++++||++++.+.+.|..++++||||||+|+|+..++++|+++||+++.+++||++|+++.++
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHhc
Q 001748 454 PRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIG 532 (1018)
Q Consensus 454 ~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ellg 532 (1018)
+++|+|||++++|.+++.+++..+|..+++++|+.++++++..|++.++|++|+|+++|+++..+ ++.||.++|.+++|
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG 241 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999998766 46899999999999
Q ss_pred cCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh----HHHHHHHHhhhhcCCH
Q 001748 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS----EARKNFFGKHTSEADM 608 (1018)
Q Consensus 533 ~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~----~i~~~~l~r~a~~~s~ 608 (1018)
....+.+|++++++..++...++..++++...|.++..++..|..++|+++..+...... ......+.++++.++.
T Consensus 242 ~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la~~~s~ 321 (702)
T PRK14960 242 LIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLISA 321 (702)
T ss_pred cCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999998877654321 2234566777899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 609 ~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
..|.++++++.+...+++.+.+++++||+++++|+.+.
T Consensus 322 ~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~~ 359 (702)
T PRK14960 322 QDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFR 359 (702)
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999875
No 22
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-51 Score=485.84 Aligned_cols=354 Identities=29% Similarity=0.470 Sum_probs=330.5
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCC-----CCCCCCCCc
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL-----EDQKPCGLC 367 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~-----~~~~PCg~C 367 (1018)
.+.+|++||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|..+ ....|||.|
T Consensus 2 sy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred cchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 467899999999999999999999999999999999999999999999999999999999999643 234699999
Q ss_pred cccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEe
Q 001748 368 RECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaT 447 (1018)
..|+.+..|.++|++++++.+.+++++||++++.+.+.|..+++|||||||+|+|+..++|+|||+||+|+.+++|||+|
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEe
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHH
Q 001748 448 PELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSL 526 (1018)
Q Consensus 448 n~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~ed 526 (1018)
+++++|++||+|||+.+.|.+++.+++.++|++++.++|+.++++++..|++.++|++|+++++++++..+ ++.||.+.
T Consensus 162 tep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~ 241 (700)
T PRK12323 162 TDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEA 241 (700)
T ss_pred CChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997655 46899999
Q ss_pred HHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh---HHHHHHHHhhh
Q 001748 527 AYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS---EARKNFFGKHT 603 (1018)
Q Consensus 527 V~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~---~i~~~~l~r~a 603 (1018)
|.+++|.+..+.++++++.+..+|....+..++++...|.++..++..|...+++++..+...... ....+.+.+++
T Consensus 242 V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~~~a 321 (700)
T PRK12323 242 VRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIRRLA 321 (700)
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876543321 11245677888
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 604 SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 604 ~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
++++.+.|..+++++.+.+.+++.+.++++.||++|++|+.+.
T Consensus 322 ~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~~ 364 (700)
T PRK12323 322 GRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFR 364 (700)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999998764
No 23
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-49 Score=475.38 Aligned_cols=355 Identities=31% Similarity=0.526 Sum_probs=334.2
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCC-CCCCCCCcccc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE-DQKPCGLCREC 370 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~-~~~PCg~C~sc 370 (1018)
+.+.+|++||||++|++|+||+++++.|.++++.|+++|+||||||+|+|||++|+++|+.++|..+. ...+||.|.+|
T Consensus 2 ~~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 2 ENYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred chhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999998754 45799999999
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
+.+..+.++++.++++.+.+++++|+++++.+.+.|+.+++|||||||+|.|+.+++++|+++||+||.+++|||+|+..
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~ 161 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEK 161 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCc
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHH
Q 001748 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYE 529 (1018)
Q Consensus 451 ~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~e 529 (1018)
+++.++|+|||+.++|.+++.+++..||.++++++|+.++++++++|+..++||+|.|+++|++++.+ ++.||.++|.+
T Consensus 162 ~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~ 241 (614)
T PRK14971 162 HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIE 241 (614)
T ss_pred hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 55699999999
Q ss_pred HhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch-----hHHHHHHHHhhhh
Q 001748 530 LIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC-----SEARKNFFGKHTS 604 (1018)
Q Consensus 530 llg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~-----~~i~~~~l~r~a~ 604 (1018)
++.....+++|+|++++..++...++..+++++..|.++..|+..|.++||+++.+|..... .....+.+.++++
T Consensus 242 ~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~~~qa~ 321 (614)
T PRK14971 242 NLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQAQ 321 (614)
T ss_pred HhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998875432 2334456677889
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 605 EADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 605 ~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
+++...|.++++.+.++|..+|++.+++++||.+|++||...
T Consensus 322 ~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~~ 363 (614)
T PRK14971 322 KCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLT 363 (614)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999875
No 24
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-50 Score=460.86 Aligned_cols=353 Identities=25% Similarity=0.484 Sum_probs=332.7
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|++++||+++++.|++++..++++|+|||+||+|+|||++|+++|+.++|.......||+.|..|..
T Consensus 2 ~~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred CcHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999988777889999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.++|+.++++....+++.++++++.+.+.|..++++|+||||+|+|+..++++||+++|+|+.++.||++|+++++
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 99999999999988776788999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g-~~IT~edV~ell 531 (1018)
++++|+|||+.++|.+++.+++.+||..+++++|+.++++++++|+..++|++|.|+++|++++.++ +.||.++|.+++
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l 241 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDML 241 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987664 689999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhH-----HHHHHHHhhhhcC
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE-----ARKNFFGKHTSEA 606 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~-----i~~~~l~r~a~~~ 606 (1018)
+..+++.+|++++++..+|...++..+++++..|.++..++..|..++||++..+....... .....+.+++.++
T Consensus 242 ~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (363)
T PRK14961 242 GLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKIAQNN 321 (363)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999887654321 2345677788999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccC
Q 001748 607 DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 607 s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~ 645 (1018)
+.+.|.++++.+.++..+++++.+++++||+++++|+..
T Consensus 322 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~~ 360 (363)
T PRK14961 322 KKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINA 360 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999854
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.7e-51 Score=491.04 Aligned_cols=355 Identities=27% Similarity=0.479 Sum_probs=333.5
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|++||||++++..|++++..++++|+|||+||+|+|||++|++||+.++|.......|||.|..|+.
T Consensus 2 sY~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 2 SYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999987666789999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.+++++++++....+++.||++++.+.+.|..++++||||||+|+|+.+++|+|||+||+|+.+++||++|+++++
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~k 161 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQK 161 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchh
Confidence 99999999999998877889999999999999998999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
|+++|+|||++|.|.+++.+++..+|+.++..+++.++++++..|+..++|++|+++++++++..+ .+.|+.+.|.+++
T Consensus 162 Ll~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~ll 241 (944)
T PRK14949 162 LPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTML 241 (944)
T ss_pred chHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999987655 4689999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh--HHHHHHHHhhhhcCCHH
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS--EARKNFFGKHTSEADMQ 609 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~--~i~~~~l~r~a~~~s~~ 609 (1018)
|.+....+..+++.+..+|...++..+.+++..|.++..|+..|..+||+++..+...... .+....+.+++.+++.+
T Consensus 242 G~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~~~a~~~s~~ 321 (944)
T PRK14949 242 GSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIRAFAEQLSPE 321 (944)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHHHHHHhCCHH
Confidence 9999888999999999999999999999999999999999999999999999888665422 23346777888999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCC
Q 001748 610 KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 610 ~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~ 647 (1018)
.|.++++++.++..+|+.+.++++.||++|++++.+.+
T Consensus 322 ~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~~p 359 (944)
T PRK14949 322 QVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVP 359 (944)
T ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999997653
No 26
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.1e-50 Score=481.61 Aligned_cols=354 Identities=29% Similarity=0.490 Sum_probs=332.5
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
+..|++||||++|+|++||++++..|.+++..++++|+|||+||+|+|||++|++||++++|.......|||.|..|+.+
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999877777899999999999
Q ss_pred ccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcc
Q 001748 374 SSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKL 453 (1018)
Q Consensus 374 ~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL 453 (1018)
..|.++|++++++....++++|+++.+.+.+.|+.++++|+||||+|+|+.+++|+||++||+||.+++||++|+++.++
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 99999999999988778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHhc
Q 001748 454 PRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIG 532 (1018)
Q Consensus 454 ~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ellg 532 (1018)
+++|+|||+.++|.+++.+++..||+.+++++|+.++++++.+|++.++|++|+|+++|++++.+ ++.||.++|.++++
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~~llg 242 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMG 242 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999998766 56899999999999
Q ss_pred cCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhH---HHHHHHHhhhhcCCHH
Q 001748 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE---ARKNFFGKHTSEADMQ 609 (1018)
Q Consensus 533 ~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~---i~~~~l~r~a~~~s~~ 609 (1018)
...++.++++++++..+|...++..+.+++..|.++..++..|.++||+++.++....... .....+.++++.|+.+
T Consensus 243 ~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~k~~~~~s~~ 322 (563)
T PRK06647 243 LTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLPEKLREFDLS 322 (563)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999998876533211 1224456666779999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCC
Q 001748 610 KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 610 ~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~ 647 (1018)
.|.++++.|.+++.++|++.+++++||+++++||.+..
T Consensus 323 ~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~~ 360 (563)
T PRK06647 323 QIERAISVLLETYRDLQFSVNPRYELEINFSKILRLKD 360 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999998773
No 27
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.3e-50 Score=468.44 Aligned_cols=352 Identities=33% Similarity=0.581 Sum_probs=330.7
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.||++||||++|++++||++++..|.+++..++++|+|||+||+|+|||++|+++|+.++|.++....|||.|..|+.
T Consensus 2 ~y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred CchHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.++|+.+++++...+++.+|.+.+.+.+.|+.+.++||||||+|+|+.+++++|+++||+|+++++||++|++.++
T Consensus 82 i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
++++|++||+++.|.+++.+++..||..+++++|+.++++++++|+..++|++|.++++|++++.+ ++.||.++|.+++
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~l 241 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999766 4679999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHH--HHHHhhhhcCCHH
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK--NFFGKHTSEADMQ 609 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~--~~l~r~a~~~s~~ 609 (1018)
+....+.+|+|++++..+|...++..+++++..|.++..++..|..+||+++.++.......+.. .++.+ ..++.+
T Consensus 242 g~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~--~~~~~~ 319 (486)
T PRK14953 242 GIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRK--LEKPLE 319 (486)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHH--hcCCHH
Confidence 99999999999999999999999999999999999999999999999999999987655432221 33433 678999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCC
Q 001748 610 KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 610 ~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~ 647 (1018)
.|.++++.+.++..++++ .+++++||+++++++.+..
T Consensus 320 ~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~~~~ 356 (486)
T PRK14953 320 ALLYLEDVINKAFSEART-RDPLRAYELAILKLLYVKD 356 (486)
T ss_pred HHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHhhCC
Confidence 999999999999999999 9999999999999998774
No 28
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.6e-49 Score=470.35 Aligned_cols=354 Identities=27% Similarity=0.464 Sum_probs=330.4
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+.+|++||||++|+||+||++++..|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|+.
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+..|.|+|++++++....+++.++.+.+.+.+.|+.++++||||||+|+|+.+++++|+++||+++.+++||++|+++++
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 99999999999998878889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHh
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ell 531 (1018)
++++|+|||+.++|.+++.+++..+|+.+++++++.+++++++.|++.++|++|+++++|++++.. .+.||.++|.+++
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~~l 241 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVL 241 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998644 4589999999999
Q ss_pred ccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch-------hHHHHHHHHhhhh
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC-------SEARKNFFGKHTS 604 (1018)
Q Consensus 532 g~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~-------~~i~~~~l~r~a~ 604 (1018)
+....+.+|++++++..+|...++..+.+++..|.++..++..|..+||+++.++..... .....+.+.+++.
T Consensus 242 g~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~~~~A~ 321 (624)
T PRK14959 242 GLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQWLGWAK 321 (624)
T ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988654221 1222345667789
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 605 EADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 605 ~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
+++...|.++++.+.++..+++++.++++.||++|++|+.++
T Consensus 322 ~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~~ 363 (624)
T PRK14959 322 RFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLP 363 (624)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999876
No 29
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.4e-50 Score=462.97 Aligned_cols=353 Identities=28% Similarity=0.503 Sum_probs=330.3
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCC--------CCCCCC
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE--------DQKPCG 365 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~--------~~~PCg 365 (1018)
..+|++||||++|++++||+.+++.|.+++.+|+++|+|||+||+|+|||++|++||+.++|+.+. ...|||
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 567999999999999999999999999999999999999999999999999999999999997532 246999
Q ss_pred CccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEE
Q 001748 366 LCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVM 445 (1018)
Q Consensus 366 ~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifIL 445 (1018)
.|.+|+.+..|.++++.++++....++++|+++.+.+...|++++++|+||||+|.|+.+++++|+++||+|++.++||+
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 99999999999999999998877788999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh------C
Q 001748 446 ITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL------G 519 (1018)
Q Consensus 446 aTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~------g 519 (1018)
+|++..++.++|++||+.++|.+++.+++..|++.+++++|+.++++++++|+..++|++|.++++|+++..+ +
T Consensus 163 ~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~ 242 (397)
T PRK14955 163 ATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGE 242 (397)
T ss_pred EeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765 3
Q ss_pred CccCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh-----HH
Q 001748 520 KKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-----EA 594 (1018)
Q Consensus 520 ~~IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~-----~i 594 (1018)
+.||.++|.++++...++++|++++++.+++...++..+++++..|++++.++..|..+||+++.+|.....+ +.
T Consensus 243 ~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~~~~~ 322 (397)
T PRK14955 243 GSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERPDA 322 (397)
T ss_pred CccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccCCHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999988764422 22
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 595 RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 595 ~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
....+.+++++++.+.|.++++.+.++++++|++.+++++||.++++|+.+.
T Consensus 323 ~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~ 374 (397)
T PRK14955 323 VRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG 374 (397)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence 3346677889999999999999999999999999999999999999999876
No 30
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=2.4e-48 Score=437.11 Aligned_cols=350 Identities=37% Similarity=0.641 Sum_probs=328.1
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
++||.+||||++|++++||+.+++.|.+++..|+++|+|||+||+|+|||++|+++|+.+.|.......|||.|.+|..+
T Consensus 1 ~~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred CccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999866666899999999999
Q ss_pred ccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcc
Q 001748 374 SSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKL 453 (1018)
Q Consensus 374 ~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL 453 (1018)
..|.++++.++++....+++.++++++.+...|++++++||||||+|.|+..++++|++++|+++.+++||++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHH
Confidence 99999999999887667788899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CccCHHHHHHHhc
Q 001748 454 PRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIG 532 (1018)
Q Consensus 454 ~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g-~~IT~edV~ellg 532 (1018)
+++|++||..+.|++++.+++..||..+++++|+.++++++++|+..++|++|.+.++|+++..++ +.||.++|+++++
T Consensus 161 ~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~ 240 (355)
T TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLG 240 (355)
T ss_pred HHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999998764 5699999999999
Q ss_pred cCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccc----chhHHHHHHHHhhhhcCCH
Q 001748 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLE----DCSEARKNFFGKHTSEADM 608 (1018)
Q Consensus 533 ~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~----~~~~i~~~~l~r~a~~~s~ 608 (1018)
...+..+|++++++..++...++..+.++...|.++..++..|.+++|+++.++... ...+.....+.+++++++.
T Consensus 241 ~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l~~~a~~~s~ 320 (355)
T TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELALKLSL 320 (355)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999999999887643 1223344667788899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhc
Q 001748 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643 (1018)
Q Consensus 609 ~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~ 643 (1018)
+.|.++++.+.++++.+|++.+++++||.+++++|
T Consensus 321 ~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 321 EFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 99999999999999999999999999999999987
No 31
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9e-48 Score=448.62 Aligned_cols=448 Identities=25% Similarity=0.399 Sum_probs=367.6
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceec
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~ 374 (1018)
++|++||||++|+|++||++++..|.+++..++++|+|||+||||||||++|+++|+.++|..+....||+.|..|..+.
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 46999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred cCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcch
Q 001748 375 SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLP 454 (1018)
Q Consensus 375 sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~ 454 (1018)
.|.++++.+++++...+++.+|++.+.+.+.|+.++++||||||+|+|+.+++++|++++|+++++++||++|+++.++.
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhh
Confidence 99999999999988888999999999999899999999999999999999999999999999999999999999888999
Q ss_pred HHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHhcc
Q 001748 455 RSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGI 533 (1018)
Q Consensus 455 ~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ellg~ 533 (1018)
++|+|||+++.|.+++.+++..+|+.+++.+|+.++++++++|++.++|++|.++++|+++..+ ++.||.++|.++++.
T Consensus 162 ~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~ 241 (472)
T PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241 (472)
T ss_pred HHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998765 457999999999999
Q ss_pred CChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHHH
Q 001748 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSR 613 (1018)
Q Consensus 534 v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~~ 613 (1018)
..++.++++++++..+|...++..+.+++..|++|..|++.|.....+.+-. .+...+..
T Consensus 242 ~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~--------------------a~~~~~~~ 301 (472)
T PRK14962 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLER--------------------ERANDIIQ 301 (472)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccC--------------------CCchHHHH
Confidence 9999999999999999999999999999999999999988877765443211 12345667
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCCCcchhhhhhccccCCCCCCcccCCCCCCcccccCCcccCCcccc
Q 001748 614 ALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANK 693 (1018)
Q Consensus 614 aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1018)
.+..+.++-.+++....+.+..|+++++++.-.++.......+..... + .++ .... . ..+++..
T Consensus 302 ~~~~~~~~~~~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~--~~~~----~-~~~~~~~ 365 (472)
T PRK14962 302 VSRQLLNILREIKFAEEKRLVCKLGSASIATRFSSPNVQENDVEEKND---N------SNV--QQKE----K-KKEESKA 365 (472)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhCCChhHHHHHHHhhcc---c------ccc--cccc----c-hhhhccc
Confidence 777788888999999999999999999999654332111111111000 0 000 0000 0 0000000
Q ss_pred ccccccchhhHHHHHHHHHHHhcch-hHHHHH-HHcCceeeeeecCceEEEEEcccchhhHhhhhhhHHHHHHHHHHHhC
Q 001748 694 LGALEDYKGTLESIWKTATELCQSN-SLKTFL-RKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLG 771 (1018)
Q Consensus 694 ~~~~~~~~~~l~~~W~~i~~~~~~~-~l~~~L-~~~g~l~~~~~~~~~~v~~~~f~~~~~~~~~e~~~~~i~~~~~~~lg 771 (1018)
. .........+..|+++++.++.+ -+..|+ ...+. +++++|...+.++-.+..+.+..++....|+..+++++|
T Consensus 366 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (472)
T PRK14962 366 K-EEKQEDIEFEKRFKELMEELKEKGDLSIFVALSLSE---VEEDGDKVKISFDSSKAMHYELMKEKLPELENLFSRKLG 441 (472)
T ss_pred h-hhhhhhhhHHHHHHHHHHHHHhcCchhhhhhhccCC---ceeeCCeEEEEeChHHhHHHHHHHHhHHHHHHHHHHHhC
Confidence 0 00111234678999999999863 344444 22333 366777776655544444555555668999999999999
Q ss_pred CeEEEEEEEcc
Q 001748 772 CNVEIRLLCAP 782 (1018)
Q Consensus 772 ~~v~v~~~~~~ 782 (1018)
.+++|++.+.+
T Consensus 442 ~~~~~~~~~~~ 452 (472)
T PRK14962 442 KNVEVELRLMG 452 (472)
T ss_pred CCeeEEEEEec
Confidence 99999999965
No 32
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.1e-48 Score=466.43 Aligned_cols=350 Identities=34% Similarity=0.550 Sum_probs=321.0
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCC-CCCCCCCcccc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE-DQKPCGLCREC 370 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~-~~~PCg~C~sc 370 (1018)
..+.+|++||||++|++++||+.+++.|.+++..++++|+|||+||+|+|||++|++||+.++|.... ...||+.|..|
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999997643 34689999888
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
.+.+++++++++++..++++||++++.+.+.|+.++++|+||||+|+|+.+++++||++||+||.+++||++|+++
T Consensus 83 ----~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 83 ----VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred ----hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 3778999999988878899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CccCHHHHHH
Q 001748 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYE 529 (1018)
Q Consensus 451 ~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g-~~IT~edV~e 529 (1018)
++++++|+|||++++|.+++.+++..||..++.++|+.++++++..|+..++|++|+|+++|++++.++ +.||.++|.+
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~e 238 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEE 238 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987664 5699999999
Q ss_pred HhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHH---HHHHHHhhhhcC
Q 001748 530 LIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA---RKNFFGKHTSEA 606 (1018)
Q Consensus 530 llg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i---~~~~l~r~a~~~ 606 (1018)
+++....+.++++++++..++...++..+++++..|.++..++..|..++||++.++.......+ ....+.+. ++
T Consensus 239 llg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~~~--~~ 316 (725)
T PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKL--KI 316 (725)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHh--cC
Confidence 99999999999999999999999999999999999999999999999999999987754332211 11223333 68
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCC
Q 001748 607 DMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 607 s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~ 647 (1018)
+...|.++++.+.++..+|+.+.++++++|+++++|+.+.+
T Consensus 317 s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~~ 357 (725)
T PRK07133 317 DDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLALSE 357 (725)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999999999999999999998763
No 33
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.7e-47 Score=446.02 Aligned_cols=448 Identities=26% Similarity=0.407 Sum_probs=360.8
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceec
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~ 374 (1018)
.+|++||||++|++++||+++++.|.+++..|+++|+||||||+|+|||++|++||++++|.......|||.|..|+.+.
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999998877778999999999999
Q ss_pred cCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcch
Q 001748 375 SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLP 454 (1018)
Q Consensus 375 sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~ 454 (1018)
.+.++++.+++++...+++.|+++++.+.+.|..++++|+||||+|+|+.+++|+||++||+||.+++|||+|+++.+++
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 99999999999887788999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHhcc
Q 001748 455 RSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGI 533 (1018)
Q Consensus 455 ~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ellg~ 533 (1018)
++|+|||++++|.+++.+++..||..+++++|+.++++++++|+..++|++|+++++|+++..+ ++.||.++|.++++.
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~lg~ 241 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999998876 468999999999999
Q ss_pred CChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHHH
Q 001748 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSR 613 (1018)
Q Consensus 534 v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~~ 613 (1018)
..++.++++++++..+|...++..+.++ .|.++..++..|..++++++.... ..+.+..+.+
T Consensus 242 ~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~----------------~~~~l~~l~r 303 (535)
T PRK08451 242 LDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKD----------------SEFSILLYER 303 (535)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhccc----------------ccccHHHHHH
Confidence 9999999999999999999999999988 579999999999999888754321 1234556889
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCCCcchhhhhhccccCCCCCCcccCCCCCCcccccCCcccCCcccc
Q 001748 614 ALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRYAHDKDGDSHCTISPRDSFKHLVRGSCVGDKANK 693 (1018)
Q Consensus 614 aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1018)
.+++|.+++..++.+.++++.|++++++++.... ....+..+...++.... ... +...+.+. .....+..
T Consensus 304 ~~riL~~~k~~l~~g~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--~~~--~~~~~~~~----~~~~~~~~- 373 (535)
T PRK08451 304 FFRILSSAKSLLKEGADDGFVLLLMLFKMKEALK-LKEIDDAIEELEQEKTT--AII--PLNTPAPI----IPNTEKEE- 373 (535)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC-cccHHHHHHHHHhhccc--cCC--CcCCCCcc----chhccccc-
Confidence 9999999999999999999999999999998542 22333333322221111 000 00000000 00000000
Q ss_pred ccccccchhhHHHHHHHHHHHhcch--hHHHHHHHcCceeeeeecCceEEEEEcccchhhHhhhhhhHHHHHHHHHHHhC
Q 001748 694 LGALEDYKGTLESIWKTATELCQSN--SLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLG 771 (1018)
Q Consensus 694 ~~~~~~~~~~l~~~W~~i~~~~~~~--~l~~~L~~~g~l~~~~~~~~~~v~~~~f~~~~~~~~~e~~~~~i~~~~~~~lg 771 (1018)
.....-...+..++..+..+ .|-....+.-+. +.++++.++..--- ..+-...-.+.++.|...+++++|
T Consensus 374 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 445 (535)
T PRK08451 374 -----AKDRIFKNLFEQLLDKIYDRNYELGECFEKNIRF--IDFDSNTLTWESNA-QGEDKELLRKGFKIIKEIVDEVFG 445 (535)
T ss_pred -----ccccchhhHHHHHHHHHHhccchHHHHHHhccee--eeecCCEEEEEecC-ChhhHHHHHHhHHHHHHHHHHHcC
Confidence 00001223455555554322 355555544333 34566655432211 122334445568899999999999
Q ss_pred CeEEEEE
Q 001748 772 CNVEIRL 778 (1018)
Q Consensus 772 ~~v~v~~ 778 (1018)
.+.+|++
T Consensus 446 ~~~~~~~ 452 (535)
T PRK08451 446 KGAKIKI 452 (535)
T ss_pred CCceEEe
Confidence 9999987
No 34
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.2e-48 Score=448.21 Aligned_cols=346 Identities=32% Similarity=0.513 Sum_probs=326.6
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCC-CCCCCCCccccc
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE-DQKPCGLCRECA 371 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~-~~~PCg~C~sc~ 371 (1018)
.+.+|++||||++|+|++||+.++..|.++++.++++|+|||+||+|+|||++|++||+.++|..+. ...|||.|..|.
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999997653 446999999999
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~ 451 (1018)
.+..|.+++++++++....+++.++++.+.+.+.|..++++||||||+|.|+.+++++|+++||+|+++++||++|+++.
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~ 162 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChH
Confidence 99999999999998877778899999999888888889999999999999999999999999999999999999999999
Q ss_pred cchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHH
Q 001748 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYEL 530 (1018)
Q Consensus 452 kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~el 530 (1018)
++.++|+|||+.++|.+++.+++..||..+++++|+.+++++++.|+..++||+|.|+++|+++..+ ++.||.++|.++
T Consensus 163 kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l 242 (451)
T PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKA 242 (451)
T ss_pred hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765 567999999999
Q ss_pred hccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHH
Q 001748 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQK 610 (1018)
Q Consensus 531 lg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~ 610 (1018)
++...++++|+|++++..+|...++..+++++..|++|..++..|.++||+++.++.. ..+.++++.++.+.
T Consensus 243 ~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~--------~~~~~~a~~~s~~~ 314 (451)
T PRK06305 243 LGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYN--------KQLSSVATKYSSEQ 314 (451)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999999999999999999999988752 24667789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 611 LSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 611 L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
|.+++..+.++++++|++.+..++||.++++++.+.
T Consensus 315 L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~~ 350 (451)
T PRK06305 315 LLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRIY 350 (451)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999765
No 35
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.1e-47 Score=445.15 Aligned_cols=353 Identities=28% Similarity=0.503 Sum_probs=318.9
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|..+....|||.|..|+.+
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred ccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcc
Q 001748 374 SSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKL 453 (1018)
Q Consensus 374 ~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL 453 (1018)
..+.|+|++++++++..+++++|++++.+.+.|+.++++|+||||+|+|+.+++++|+++||+||++++||++|+.++++
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 99999999999988878999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CccCHHHHHHHhc
Q 001748 454 PRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG-KKITLSLAYELIG 532 (1018)
Q Consensus 454 ~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g-~~IT~edV~ellg 532 (1018)
+++|+|||++++|.+++.+++..||..++.++|+.+++++++.|+..++|++|+|+++|+++..+. ..||.++|.++++
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V~ellg 242 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFG 242 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999987764 4599999999999
Q ss_pred cCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHH------HHHHHHhhh-hc
Q 001748 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA------RKNFFGKHT-SE 605 (1018)
Q Consensus 533 ~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i------~~~~l~r~a-~~ 605 (1018)
....+.+|++++++..+|...++..+++++..|.++..++..|..++||+|.++...+...+ ....+.-.+ +.
T Consensus 243 ~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~~k~~~~~~~L~~~~~~~~~~~~~~~~~~ 322 (605)
T PRK05896 243 LVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNLEKQKL 322 (605)
T ss_pred cCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhcCChhhhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776543211 111111110 11
Q ss_pred CCHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 606 ADMQ-KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 606 ~s~~-~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
+.++ .+-..+..+.++-.+|+.+.++...+|..+.++.+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (605)
T PRK05896 323 LSIEFNTNFLLNNFVSLINRLKASVNQVFEFEIYLYKIINAN 364 (605)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccC
Confidence 1111 1445566777888899999999999999999988755
No 36
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=8.5e-46 Score=398.76 Aligned_cols=321 Identities=43% Similarity=0.609 Sum_probs=280.9
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
..+.|.+||||++|+|++||+++++.|++++.. +..++||||||||||||++|++||++++|+ ...||+.|..|..
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~~---~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNCE---QLFPCRVLELNAS 97 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcCc---cccccchhhhccc
Confidence 667899999999999999999999999999998 777899999999999999999999999994 4579999999999
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHh--cCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSA--FLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a--~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
...|.... .... ..+..+.... ........+||+||||+|.|+.++|++|+++||.++.+++|||+||+.
T Consensus 98 derGisvv-----r~Ki---k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 98 DERGISVV-----REKI---KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred ccccccch-----hhhh---cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 98887621 1121 2222222222 112223457999999999999999999999999999999999999999
Q ss_pred CcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHH-
Q 001748 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYE- 529 (1018)
Q Consensus 451 ~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~e- 529 (1018)
++|+..|.|||+.|.|+++..+++..+|+.|+.+||+.++++++.+|++.++|++|+|+..|++++..|++||...+.+
T Consensus 170 srii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~ 249 (346)
T KOG0989|consen 170 SRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEE 249 (346)
T ss_pred hhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999555554
Q ss_pred HhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHH
Q 001748 530 LIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQ 609 (1018)
Q Consensus 530 llg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~ 609 (1018)
+.|.++++.+.++++..+++|+.+....+++++..|.+|++++.+|+..+.+.+ +-.......+...++...-+..+..
T Consensus 250 ~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~-g~~d~~k~~~~~kl~~~~~~~~dg~ 328 (346)
T KOG0989|consen 250 LAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDII-GLSDEQKAQISLKLFTRDKRLEDGE 328 (346)
T ss_pred HhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhccchhhcch
Confidence 556999999999999999999999999999999999999999999999999886 4444445566667777777888889
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001748 610 KLSRALKILSETEKQLR 626 (1018)
Q Consensus 610 ~L~~aL~iLseae~qLK 626 (1018)
.+..++..|.+++.+++
T Consensus 329 ~l~~~L~~L~~~~~ql~ 345 (346)
T KOG0989|consen 329 DLELALKDLLEAEKQLR 345 (346)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99999999999998875
No 37
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.4e-43 Score=400.51 Aligned_cols=343 Identities=31% Similarity=0.510 Sum_probs=311.4
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
+.+.+|++||||++|++++||+.+++.|.++++.|+++++||||||+|+|||++|+++++.++|..... +|
T Consensus 2 ~~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~--~~------- 72 (367)
T PRK14970 2 ENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDD--PN------- 72 (367)
T ss_pred cchHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CC-------
Confidence 356789999999999999999999999999999999999999999999999999999999998753221 11
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~ 451 (1018)
.+.++++.+++.....+++.++++++.+...|+.++++||||||+|.++..++++|++++|+++.+++||++++...
T Consensus 73 ---~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 73 ---EDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred ---CCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 12234555666656567789999999998899999999999999999999999999999999999999999999999
Q ss_pred cchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHH
Q 001748 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYEL 530 (1018)
Q Consensus 452 kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~el 530 (1018)
++.++|.+||+.++|.+++.+++..||..+++++|+.++++++++|+..++||+|.++++|+++..+ ++.||.++|+++
T Consensus 150 kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~ 229 (367)
T PRK14970 150 KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTEN 229 (367)
T ss_pred cCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999876 556999999999
Q ss_pred hccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch-----hHHHHHHHHhhhhc
Q 001748 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC-----SEARKNFFGKHTSE 605 (1018)
Q Consensus 531 lg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~-----~~i~~~~l~r~a~~ 605 (1018)
++...++++|++++++..++...++..+++++..|.+|..++..|.++||+++.+|..... +....+.+.+++++
T Consensus 230 ~~~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~ 309 (367)
T PRK14970 230 LNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQK 309 (367)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999998874322 24455677888999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 606 ADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 606 ~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
|+.+.|.+++..|.+++.++|++.++++++|+++++|+...
T Consensus 310 ~s~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~~~ 350 (367)
T PRK14970 310 VSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASIN 350 (367)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999876
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=2e-38 Score=354.47 Aligned_cols=308 Identities=18% Similarity=0.214 Sum_probs=270.0
Q ss_pred ccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceecc
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375 (1018)
Q Consensus 296 ~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~s 375 (1018)
||.+||||++|++++||++++..|+.++..++++| +||+||+|+|||++|+++|+++.|...
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~----------------- 63 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHELLGPNY----------------- 63 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHhcccC-----------------
Confidence 79999999999999999999999999999888865 789999999999999999999976421
Q ss_pred CCCCcccccccccccchhHHHHHHHHhcCCC---CCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 376 GRSRDVKEVDSVRINRSDRVGSLMKSAFLPP---FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 376 G~~~DvieIdaas~~~vd~IReLie~a~~~P---~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
...+.++++....+++.+++++......+ ..+.++|+||||+|.|+..++++|++++|.++.++.||++++...+
T Consensus 64 --~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~ 141 (319)
T PLN03025 64 --KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSK 141 (319)
T ss_pred --ccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccc
Confidence 12355677666667778888776543221 2356899999999999999999999999999999999999999999
Q ss_pred chHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhc
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIG 532 (1018)
Q Consensus 453 L~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg 532 (1018)
+.++|+|||..+.|.+++.+++..+|+.+++++|+.++++++++|+..++||+|.+++.|+.+....+.||.++|.++.+
T Consensus 142 i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~ 221 (319)
T PLN03025 142 IIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCD 221 (319)
T ss_pred cchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999997665556899999999999
Q ss_pred cCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHH
Q 001748 533 IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLS 612 (1018)
Q Consensus 533 ~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~ 612 (1018)
...++.++++++++..++...++..+.+++..|.+|..|+..|.+.++.. .++...-.
T Consensus 222 ~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~----------------------~~~~~~~~ 279 (319)
T PLN03025 222 QPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY----------------------DMPEFLKL 279 (319)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------CCCHHHHH
Confidence 99999999999999999999999999999999999999999986654421 11222234
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHhccC
Q 001748 613 RALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 613 ~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~ 645 (1018)
.++..+++++.++..|.++.+.|+.++.+++..
T Consensus 280 ~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~ 312 (319)
T PLN03025 280 EYLREIGFAHMRICDGVGSLLQLSGLLAKLCLV 312 (319)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999998764
No 39
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.2e-36 Score=346.05 Aligned_cols=334 Identities=22% Similarity=0.307 Sum_probs=271.3
Q ss_pred CcccccCcHHHHHHHHHHHHcCC---------CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceecc
Q 001748 305 FFDELVGQNVVVRSLLSAISRGM---------VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~gr---------l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~s 375 (1018)
.|++|+||+++++.|++++..++ ++|+|||+||+|+|||++|++||+.++|.... ..|||.|+.|+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCGECRACRTVLA 81 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhc
Confidence 58999999999999999999987 89999999999999999999999999998754 579999999999999
Q ss_pred CCCCcccccccc-cccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcch
Q 001748 376 GRSRDVKEVDSV-RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLP 454 (1018)
Q Consensus 376 G~~~DvieIdaa-s~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~ 454 (1018)
|.|+|+..+... ...++++||++++.+...|..++++|+||||+|.|+..++|+||++||+|+.+++||++|+++..++
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ll 161 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL 161 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHCh
Confidence 999999888654 3467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH----------h---hCCc
Q 001748 455 RSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS----------L---LGKK 521 (1018)
Q Consensus 455 ~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLs----------l---~g~~ 521 (1018)
+||+|||+.+.|++++.+++..||.+ +.+ ++++++..++..++|+++.|+.++..-. + ....
T Consensus 162 pTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~~l~~l~~~ 236 (394)
T PRK07940 162 PTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLATDEEARARRAEVLNLALRLARV 236 (394)
T ss_pred HHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999873 224 5788889999999999999877653210 0 0110
Q ss_pred ---------c---CHHHHHHHhccCChhHHHHHHHHHHcCCh-----------HHHHHHHHHHHH------cCCCHHHHH
Q 001748 522 ---------I---TLSLAYELIGIVSDDELLDLLDLALSSDT-----------SNTVIRARELMR------SKIDPMQLI 572 (1018)
Q Consensus 522 ---------I---T~edV~ellg~v~ee~If~Lldail~~d~-----------~~al~~l~eLl~------~G~dpl~LL 572 (1018)
+ ..+.++..++.+.+....++.+.+..++. ..++..+.+... .......++
T Consensus 237 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 316 (394)
T PRK07940 237 SDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRASRDALDRAL 316 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhhhhhHHHHH
Confidence 0 11234556666777777777776543322 222222222211 123456788
Q ss_pred HHHHHHHHHHHhcccccchhHH---HHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcc
Q 001748 573 SQLANLIMDILAGKCLEDCSEA---RKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644 (1018)
Q Consensus 573 ~~L~~~LRdLL~~K~~~~~~~i---~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~ 644 (1018)
..|..++||++..+.......+ ....+.+.+.+++...|.++++.+.++...++.+.|+++.||.+++++..
T Consensus 317 ~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll~l~~ 391 (394)
T PRK07940 317 VDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAARSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVAALRQ 391 (394)
T ss_pred HHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8999999999988765332222 23456667888999999999999999999999999999999999999853
No 40
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=9.1e-36 Score=329.47 Aligned_cols=311 Identities=25% Similarity=0.362 Sum_probs=269.2
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
...+|.+||||++|++++|+++++..|..+++.+..++ +||+||+|+|||++++++++.+.+...
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~-~ll~G~~G~GKt~~~~~l~~~l~~~~~-------------- 67 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEDW-------------- 67 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCcc--------------
Confidence 34679999999999999999999999999999888765 699999999999999999999864311
Q ss_pred eccCCCCcccccccccccchhHHHHHHHH-hcCCCCC-CCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKS-AFLPPFS-SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~-a~~~P~~-g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
...+.+++.....+.+.+++.+.. +...|+. +.++|++|||+|.|....++.|+++++.++.++.||++++..
T Consensus 68 -----~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 68 -----RENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred -----ccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 112333433333333444444333 3355665 568999999999999999999999999999999999999998
Q ss_pred CcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHH
Q 001748 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530 (1018)
Q Consensus 451 ~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~el 530 (1018)
.++.+++.+||.++.|.+++.+++..+|+.++.++|+.++++++++|+..++||+|.++++|++++..++.||.++|.++
T Consensus 143 ~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~ 222 (319)
T PRK00440 143 SKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKI 222 (319)
T ss_pred cccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred hccCChhHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHH
Q 001748 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMR-SKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQ 609 (1018)
Q Consensus 531 lg~v~ee~If~Lldail~~d~~~al~~l~eLl~-~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~ 609 (1018)
++...++++|++++++..++...++..+++|+. .|.++..++..|... + . +++++..
T Consensus 223 ~~~~~~~~i~~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~---~----------------~---~~~~~~~ 280 (319)
T PRK00440 223 TGTARPEEIREMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHRE---V----------------W---SLDIPEE 280 (319)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH---H----------------H---hcCCCHH
Confidence 999999999999999999999999999999985 789998887666421 0 0 1578899
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccC
Q 001748 610 KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 610 ~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~ 645 (1018)
.+.+++..+.++|.++|+|.++.+.||.+++++|.+
T Consensus 281 ~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 281 LKVELIDAIGEADFRITEGANERIQLEALLAKLALL 316 (319)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999865
No 41
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=4.7e-36 Score=337.20 Aligned_cols=308 Identities=19% Similarity=0.188 Sum_probs=255.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccccc---
Q 001748 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVR--- 388 (1018)
Q Consensus 312 qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas--- 388 (1018)
+....+.|.+++..|+++|+|||+||+|+||+++|.+||+.+.|.++....|||.|++|+.+..|.|+|+..+.+..
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 56788999999999999999999999999999999999999999988777899999999999999999999986543
Q ss_pred ccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCC
Q 001748 389 INRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468 (1018)
Q Consensus 389 ~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~ 468 (1018)
..++++||++.+.+...|..+++||+|||++|.|+.++.|+|||+|||||++++||++|..++++++||+|||+.+.|++
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~ 166 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAP 166 (334)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHHH-HHHH
Q 001748 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLL-DLAL 547 (1018)
Q Consensus 469 ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~Ll-dail 547 (1018)
++.+++..||.+. ..++++.+..++..++|++..|+.+++.-.... ...+++.+ ..+.
T Consensus 167 ~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~----------------r~~~~~~l~~~~~ 225 (334)
T PRK07993 167 PPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQPERWQQ----------------REALCQALAYALP 225 (334)
T ss_pred CCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhcCchHHH----------------HHHHHHHHHHHhc
Confidence 9999999999642 236677778889999999999988876421100 01111111 1222
Q ss_pred cCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHH---HHHHHHhhhhcCCHHHHHHHHHHHHHHHHH
Q 001748 548 SSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA---RKNFFGKHTSEADMQKLSRALKILSETEKQ 624 (1018)
Q Consensus 548 ~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i---~~~~l~r~a~~~s~~~L~~aL~iLseae~q 624 (1018)
.++....+.. + .+.+...++..|..++||++..+.... ..+ ..+.+..++..++...|.+.++.+.++.+.
T Consensus 226 ~~~~~~~~~~---~--~~~~~~~~L~~l~~~~rD~l~~~~~~~-~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~~~~~~ 299 (334)
T PRK07993 226 SGDWLSLLPA---L--NHEQAPARLHWLATLLMDALKRQHGAA-YVTNQDQPPLVAQLANHLSPARLQAILGDVCHCREQ 299 (334)
T ss_pred CCCHHHHHHH---H--cccCHHHHHHHHHHHHHHHHHHhcCCc-ceeCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2333222222 1 356677889999999999998876531 112 234566778899999999999999999999
Q ss_pred Hhc--CCChHHHHHHHHHHhccCC
Q 001748 625 LRM--SKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 625 LK~--s~n~rl~LE~lLlkL~~~~ 646 (1018)
+.. +.|+++.||.+++++....
T Consensus 300 l~~~~N~N~~L~le~lll~~~~~~ 323 (334)
T PRK07993 300 LLSVTGVNRELLLTDLLLRIEHYL 323 (334)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Confidence 996 8899999999999997653
No 42
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.6e-35 Score=330.20 Aligned_cols=306 Identities=15% Similarity=0.211 Sum_probs=265.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
++|++++||+.+++.|.+++..|+++|+|||+||+|+|||++|+.+|+.+.|... .+.|+|+..
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~----------------~~~h~D~~~ 64 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQ----------------QREYVDIIE 64 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCC----------------CCCCCCeEE
Confidence 4699999999999999999999999999999999999999999999999988642 245777766
Q ss_pred ccc--ccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCc
Q 001748 384 VDS--VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRS 461 (1018)
Q Consensus 384 Ida--as~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRc 461 (1018)
+.. ....++++||++.+.+...|+.+++||+|||++|.|+.+++|+|||+||+||++++||++|++++++++||+|||
T Consensus 65 ~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 65 FKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred eccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 654 233567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHH
Q 001748 462 QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLD 541 (1018)
Q Consensus 462 q~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~ 541 (1018)
+.+.|.+++.+++..||.+.+. .++++++..++..++|++..|...+..-... + ..+.+++
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~~----------~-----~~~~~~~ 205 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSLK----------N-----IRNMSLE 205 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHHH----------H-----HHHHHHH
Confidence 9999999999999999976542 4678888999999999999887665432110 0 1357889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch----hHHHHHHHHhhhhcCCHHHHHHHHHH
Q 001748 542 LLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC----SEARKNFFGKHTSEADMQKLSRALKI 617 (1018)
Q Consensus 542 Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~----~~i~~~~l~r~a~~~s~~~L~~aL~i 617 (1018)
+++++..++...++..+..+...+.++..++.+|..++||++.++..... .......+.+++..++...|.++++.
T Consensus 206 ~~~~l~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~~~ 285 (313)
T PRK05564 206 ILKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEI 285 (313)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988864332 12234567778899999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhcc
Q 001748 618 LSETEKQLRMSKHQTTWLTVALLQLSS 644 (1018)
Q Consensus 618 Lseae~qLK~s~n~rl~LE~lLlkL~~ 644 (1018)
+.++++.++++.|+++.||.+++++..
T Consensus 286 l~~~~~~l~~n~n~~l~le~lll~~~~ 312 (313)
T PRK05564 286 INDTRDNLSSNVNPTLVFDSMLIKMQE 312 (313)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHhhhc
Confidence 999999999999999999999999853
No 43
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=6.1e-36 Score=336.07 Aligned_cols=318 Identities=22% Similarity=0.322 Sum_probs=261.9
Q ss_pred CcccccC-cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVG-QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVG-qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
.|+.|+| |+.+++.|.+++..|+++|+|||+||+|+||+++|++||+.+.|..+....|||.|..|+.+..|.|+|+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 5788998 999999999999999999999999999999999999999999999877778999999999999999999988
Q ss_pred ccccc-ccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCcc
Q 001748 384 VDSVR-INRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462 (1018)
Q Consensus 384 Idaas-~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq 462 (1018)
+...+ ..++++||++++.+...|+.+++||+||||+|.|+.+++|+|||+||+||++++||++|+.+.++++||+|||+
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ 162 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhce
Confidence 86543 35689999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHH
Q 001748 463 KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDL 542 (1018)
Q Consensus 463 ~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~L 542 (1018)
.+.|.+++.+++..+|.. +| ++++++.+++... |+++.|+..++.-.... ..+.+..+
T Consensus 163 ~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~~~---------------~~~~~~~~ 220 (329)
T PRK08058 163 VVEFRPLPPESLIQRLQE----EG--ISESLATLLAGLT-NSVEEALALSEDDWFAQ---------------ARALVIKL 220 (329)
T ss_pred eeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHHc-CCHHHHHHHhcCchHHH---------------HHHHHHHH
Confidence 999999999999888863 45 5566666677664 78999988776422110 01234455
Q ss_pred HHHHHcCChHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHhcccccchh---HHHHHHHHhhhhcCCHHHHHHHHH
Q 001748 543 LDLALSSDTSNTVIRARELMR---SKIDPMQLISQLANLIMDILAGKCLEDCS---EARKNFFGKHTSEADMQKLSRALK 616 (1018)
Q Consensus 543 ldail~~d~~~al~~l~eLl~---~G~dpl~LL~~L~~~LRdLL~~K~~~~~~---~i~~~~l~r~a~~~s~~~L~~aL~ 616 (1018)
++.+..++....+....++.. .......++..|..++||++..+...... .-....+...+..++...|.++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~l~~~~~ 300 (329)
T PRK08058 221 YEALHEKDLQSFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQIVAALE 300 (329)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 565656665554544444442 22223456788999999998877642221 112346677789999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhcc
Q 001748 617 ILSETEKQLRMSKHQTTWLTVALLQLSS 644 (1018)
Q Consensus 617 iLseae~qLK~s~n~rl~LE~lLlkL~~ 644 (1018)
.+.++.+.++.+.|+++.||.+++++..
T Consensus 301 ~~~~~~~~l~~n~n~~L~le~lll~~~~ 328 (329)
T PRK08058 301 LILEAKRRLNSNVNFQLVMEQLVLRLQE 328 (329)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccc
Confidence 9999999999999999999999999753
No 44
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=7.6e-35 Score=324.85 Aligned_cols=323 Identities=23% Similarity=0.361 Sum_probs=265.6
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCC----CCCCcccc
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQK----PCGLCREC 370 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~----PCg~C~sc 370 (1018)
.+|.+||||++|++++|++.+++.|.+++..++.+ ++||+||+|+|||++|+++++++.+....... .+..+..+
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~-~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLP-HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCc-eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 37999999999999999999999999999988775 47999999999999999999999865321110 01111010
Q ss_pred ceeccCCCCccccc-cc---ccccchhHHHHHHHHh-cCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEE
Q 001748 371 ALFSSGRSRDVKEV-DS---VRINRSDRVGSLMKSA-FLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVM 445 (1018)
Q Consensus 371 ~~i~sG~~~DvieI-da---as~~~vd~IReLie~a-~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifIL 445 (1018)
.... ..++++..+ .. ......+.+++++... ...|+.+.+++|||||+|.|....++.|++++++++..+.||+
T Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il 160 (337)
T PRK12402 82 KKYL-VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFII 160 (337)
T ss_pred hhhh-hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEE
Confidence 0000 011111110 00 1112345677766554 3678788899999999999999999999999999988899999
Q ss_pred EecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHH
Q 001748 446 ITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLS 525 (1018)
Q Consensus 446 aTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~e 525 (1018)
+++.+.++.++|++||..+.|.+++.+++..+|+.+++++|+.+++++++.|+..++||+|.+++.|++++..++.||.+
T Consensus 161 ~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~ 240 (337)
T PRK12402 161 ATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITME 240 (337)
T ss_pred EeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99888889999999999999999999999999999999999999999999999999999999999999988666789999
Q ss_pred HHHHHhccC-ChhHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhh
Q 001748 526 LAYELIGIV-SDDELLDLLDLALSSDTSNTVIRARELM-RSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT 603 (1018)
Q Consensus 526 dV~ellg~v-~ee~If~Lldail~~d~~~al~~l~eLl-~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a 603 (1018)
+|+++++.. .++++|++++++..++...++..+.+++ ..|..+..|+..|... . +
T Consensus 241 ~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~--------------------~--~- 297 (337)
T PRK12402 241 AAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRV--------------------A--R- 297 (337)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------------------H--H-
Confidence 999999974 5889999999999999999999999987 6899998887776431 0 0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q 001748 604 SEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQL 642 (1018)
Q Consensus 604 ~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL 642 (1018)
.+++...+.+++..+.++|+++|++.++.+.||.++.++
T Consensus 298 ~~~~~~~l~~~~~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 298 SRYRGDNLARLHRLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 128889999999999999999999999999999999886
No 45
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=4.3e-35 Score=328.68 Aligned_cols=304 Identities=20% Similarity=0.245 Sum_probs=247.4
Q ss_pred HHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc---cccchhHH
Q 001748 319 LLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV---RINRSDRV 395 (1018)
Q Consensus 319 L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa---s~~~vd~I 395 (1018)
+.+.+..|+++|+|||+||+|+||+++|+.||+.++|..+....|||.|++|+.+..|.|+|+..+.+. ...++++|
T Consensus 12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i 91 (328)
T PRK05707 12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV 91 (328)
T ss_pred HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH
Confidence 444556699999999999999999999999999999998877889999999999999999999988653 34688999
Q ss_pred HHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCCChhHHH
Q 001748 396 GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475 (1018)
Q Consensus 396 ReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~ 475 (1018)
|++++.+...|..+++||+|||++|.|+.+++|+|||+|||||++++||++|++++.+++||+|||+.+.|.+++.+++.
T Consensus 92 R~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 92 RELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred HHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHHHHHHHcCChHHHH
Q 001748 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTV 555 (1018)
Q Consensus 476 ~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~Lldail~~d~~~al 555 (1018)
.||.+.. -..+++.+..++..++|++..|+..++.-.... ...+++.+..+..++. ..+
T Consensus 172 ~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~----------------r~~~~~~l~~~~~~~~-~~~ 230 (328)
T PRK05707 172 QWLQQAL----PESDERERIELLTLAGGSPLRALQLHEQGVREQ----------------RARVLDGVKKLLKQQQ-SAS 230 (328)
T ss_pred HHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHCcchHHH----------------HHHHHHHHHHHhcCcc-cHH
Confidence 9997643 124566677788999999999988765421110 1122333333333222 223
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh----HHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHh--cCC
Q 001748 556 IRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS----EARKNFFGKHTSEADMQKLSRALKILSETEKQLR--MSK 629 (1018)
Q Consensus 556 ~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~----~i~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK--~s~ 629 (1018)
.....+ .+.+...++..|..+++|++..+...... .-..+.+...+.+++...|..+++.+.++...++ .+.
T Consensus 231 ~~~~~~--~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~~~Nv 308 (328)
T PRK05707 231 QLAESW--LKVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLGKANL 308 (328)
T ss_pred HHHHHH--ccCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccCCC
Confidence 333222 35677788999999999999887653321 1123566677889999999999999999999986 688
Q ss_pred ChHHHHHHHHHHhccC
Q 001748 630 HQTTWLTVALLQLSSS 645 (1018)
Q Consensus 630 n~rl~LE~lLlkL~~~ 645 (1018)
|+++.||.+++++...
T Consensus 309 N~~L~le~lll~~~~~ 324 (328)
T PRK05707 309 NRQLLLEALLVQWAGL 324 (328)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998653
No 46
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.1e-34 Score=323.91 Aligned_cols=306 Identities=18% Similarity=0.189 Sum_probs=247.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc--cc
Q 001748 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV--RI 389 (1018)
Q Consensus 312 qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa--s~ 389 (1018)
+....+.|.+++.+|+++|+|||+||+|+||+++|+.||+.++|..+....|||.|++|+.+..|.|+|+..+.+. ..
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 5677889999999999999999999999999999999999999998777789999999999999999999988652 34
Q ss_pred cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCC
Q 001748 390 NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKI 469 (1018)
Q Consensus 390 ~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~l 469 (1018)
.++++||++.+.+...|..+++||+|||++|.|+..++|+|||+|||||++++||++|+.++++++||+|||+.+.|.++
T Consensus 87 I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~ 166 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPP 166 (325)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHHHH-HHHc
Q 001748 470 KDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLD-LALS 548 (1018)
Q Consensus 470 s~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~Lld-ail~ 548 (1018)
+.+++..||.... ..++..+..++..++|++..|+..++.-..... ..+++.+. ....
T Consensus 167 ~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r----------------~~~~~~l~~~~~~ 225 (325)
T PRK06871 167 EEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQR----------------KTFLRQFWLFYRR 225 (325)
T ss_pred CHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHHH----------------HHHHHHHHHHhcc
Confidence 9999999998653 234445667788999999988777654211100 01111111 1222
Q ss_pred CChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHH---HHHHHHhhhhcCCHHHHHHHHHHHHHHHHHH
Q 001748 549 SDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA---RKNFFGKHTSEADMQKLSRALKILSETEKQL 625 (1018)
Q Consensus 549 ~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i---~~~~l~r~a~~~s~~~L~~aL~iLseae~qL 625 (1018)
++....+. .+ . +.+...++..|..++||++..+.......+ ....+.+.+.+++...|.++++.+.++.+.+
T Consensus 226 ~~~~~~~~---~~-~-k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~~L 300 (325)
T PRK06871 226 RSPLELLP---LF-D-KELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDL 300 (325)
T ss_pred CCHHHHHH---HH-h-hccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 22222221 11 2 346677888999999999988765332211 2356667788999999999999999999999
Q ss_pred hcC--CChHHHHHHHHHHhc
Q 001748 626 RMS--KHQTTWLTVALLQLS 643 (1018)
Q Consensus 626 K~s--~n~rl~LE~lLlkL~ 643 (1018)
+.+ .|+.+.|+..|+.+.
T Consensus 301 ~~~~~iN~~L~l~~~l~~~~ 320 (325)
T PRK06871 301 LQINAVNQELILLDGLTRLV 320 (325)
T ss_pred HcccccCHHHHHHHHHHHHH
Confidence 664 489999999888764
No 47
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=4.2e-33 Score=313.27 Aligned_cols=302 Identities=19% Similarity=0.266 Sum_probs=240.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCC-CCCCCCCccccceeccCCCCcccccccc---
Q 001748 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE-DQKPCGLCRECALFSSGRSRDVKEVDSV--- 387 (1018)
Q Consensus 312 qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~-~~~PCg~C~sc~~i~sG~~~DvieIdaa--- 387 (1018)
+....+.|... .++++|+|||+||+|+||+++|+.||+.++|..+. ...|||.|..|+.+..|.|+|+..+.+.
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~ 83 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA 83 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 34556666664 67999999999999999999999999999998764 3579999999999999999999887432
Q ss_pred --------------------------cccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcE
Q 001748 388 --------------------------RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHV 441 (1018)
Q Consensus 388 --------------------------s~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~v 441 (1018)
...++++||++.+.+...|..+++||+|||++|.|+.+++|+|||+|||||+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t 163 (342)
T PRK06964 84 AEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGT 163 (342)
T ss_pred ccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCc
Confidence 246789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCc
Q 001748 442 VFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK 521 (1018)
Q Consensus 442 ifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~ 521 (1018)
+||++|++++++++||+|||+.+.|.+++.+++..||.+. ++ ++. +.++..++|++..|+..++.- .
T Consensus 164 ~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~~--~~~l~~~~Gsp~~Al~~~~~~----~- 230 (342)
T PRK06964 164 VFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--ADA--DALLAEAGGAPLAALALASDE----N- 230 (342)
T ss_pred EEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--ChH--HHHHHHcCCCHHHHHHHHCCC----h-
Confidence 9999999999999999999999999999999999999753 33 332 235678899999998877431 0
Q ss_pred cCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch--hHHHHHHH
Q 001748 522 ITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC--SEARKNFF 599 (1018)
Q Consensus 522 IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~--~~i~~~~l 599 (1018)
.+..+ .+++.+........+.....+. +.+...++..|..+++|++..+..... ..-..+.+
T Consensus 231 --~~~~~------------~~~~~l~~~~~~~~~~~~~~~~--k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~l 294 (342)
T PRK06964 231 --RPLRD------------WTLGQLAAGAACDAFACAETLQ--KLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAAL 294 (342)
T ss_pred --HHHHH------------HHHHHHhccCchhHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHHH
Confidence 01111 1112222222222222222222 356677899999999999988764321 11123566
Q ss_pred HhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcc
Q 001748 600 GKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644 (1018)
Q Consensus 600 ~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~ 644 (1018)
.+.+.+++...|.++++.+.++...+..+.|+++.||.+++++..
T Consensus 295 ~~~a~~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~ 339 (342)
T PRK06964 295 ARCAAAVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYRE 339 (342)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999998854
No 48
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=7.9e-33 Score=308.85 Aligned_cols=286 Identities=23% Similarity=0.320 Sum_probs=226.4
Q ss_pred CcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccc
Q 001748 305 FFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEV 384 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieI 384 (1018)
.|++++||+++++.|.+++..|+++|+|||+||+|+||+++|.+||+.+.|.. +||.|..|+ +..+.|+|+..+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~-----~c~~c~~~~-~~~~~hPDl~~i 75 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG-----SPSKNIRRR-LEEGNHPDLLWV 75 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCCcHhcc-cccCCCCCEEEE
Confidence 58999999999999999999999999999999999999999999999999974 899999999 889999998876
Q ss_pred ccc-----------------------cccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcE
Q 001748 385 DSV-----------------------RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHV 441 (1018)
Q Consensus 385 daa-----------------------s~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~v 441 (1018)
.+. ...++++||++.+.+...|+.+++||+|||++|.|+..++|+|||+||||| ++
T Consensus 76 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~ 154 (314)
T PRK07399 76 EPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred eccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC
Confidence 542 124578999999999999999999999999999999999999999999999 88
Q ss_pred EEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCc
Q 001748 442 VFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK 521 (1018)
Q Consensus 442 ifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~ 521 (1018)
+|||+|++++++++||+|||+.+.|.+++.+++.++|.+....++.. ..+..++..++|+++.|++.++....
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~~---- 227 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQS---- 227 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999999999876443332 22567889999999999998875421
Q ss_pred cCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHhcccccchhHHHHHH
Q 001748 522 ITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPM---QLISQLANLIMDILAGKCLEDCSEARKNF 598 (1018)
Q Consensus 522 IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl---~LL~~L~~~LRdLL~~K~~~~~~~i~~~~ 598 (1018)
+..+.+..+ ..+. .+...++...+.+ ..+.+.. .++..+..+++.
T Consensus 228 ~~~~~~~~~-------------~~~~-~~~~~~~~~a~~~-~~~~~~e~Q~~~l~~~~~~~~~----------------- 275 (314)
T PRK07399 228 IPPELLQKL-------------EQPP-KSPLEALELAKDI-SEELDIEQQLWLIDYLQQHYWQ----------------- 275 (314)
T ss_pred HHHHHHHHH-------------Hhcc-cCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHH-----------------
Confidence 222222222 2111 2334444333332 2222222 233333333222
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccC
Q 001748 599 FGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 599 l~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~ 645 (1018)
. .....+++.|.++.+.+..++|+++++|.++++|+..
T Consensus 276 ---~------~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~l~l~~~ 313 (314)
T PRK07399 276 ---K------TKNRQLLKQLEKLRKQLLSYVQPRLAWEVTLLELSQL 313 (314)
T ss_pred ---h------hcchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHhcC
Confidence 0 1256778999999999999999999999999999753
No 49
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=9.3e-33 Score=307.90 Aligned_cols=302 Identities=16% Similarity=0.212 Sum_probs=238.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc---c
Q 001748 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV---R 388 (1018)
Q Consensus 312 qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa---s 388 (1018)
+....+.|.+++..++++|+|||+||.|+||+++|+.||+.+.|.++. ..|||.|.+|+.+..|.|+|+..+.+. .
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-SEACGFCHSCELMQSGNHPDLHVIKPEKEGK 86 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCHHHHHHHcCCCCCEEEEecCcCCC
Confidence 567889999999999999999999999999999999999999999854 479999999999999999999988764 3
Q ss_pred ccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCC
Q 001748 389 INRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468 (1018)
Q Consensus 389 ~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~ 468 (1018)
..++++||++.+.+...|..+++||+|||++|.|+..++|+|||+|||||++++||++|+.++++++||+|||+.+.|++
T Consensus 87 ~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~ 166 (319)
T PRK06090 87 SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTP 166 (319)
T ss_pred cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHHHHHHHc
Q 001748 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALS 548 (1018)
Q Consensus 469 ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~Lldail~ 548 (1018)
++.+++.+||.. .|+. ....++..++|++..|+..++.-... .- .+.+..+.+.+..
T Consensus 167 ~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~~~~~~-------~~--------~~~~~~l~~~l~~ 223 (319)
T PRK06090 167 PSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMKEGGLE-------KY--------HKLERQLVDALSG 223 (319)
T ss_pred CCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhCCCcHH-------HH--------HHHHHHHHHHHhc
Confidence 999999999864 3543 23467889999999998876421110 00 1112233333333
Q ss_pred CChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcC
Q 001748 549 SDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMS 628 (1018)
Q Consensus 549 ~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s 628 (1018)
++ ...+.....+...+ ..++.+|..+++|++..+.......+... +... .+++...|.+.+..+.++.+++..+
T Consensus 224 ~~-~~~~~~a~~~~~~~---~~~l~~L~~ll~Dll~~~~g~~~~~~~~~-~~~l-~~~~~~~l~~~~~~l~~~~~~L~~~ 297 (319)
T PRK06090 224 PV-SDQLKCASLIAADP---LTHLSWLWLLLTDAQKVHFGVQNEYYLPG-SAAL-GPFTYSGLYVSTAKLERLKEQLQQF 297 (319)
T ss_pred Cc-ccHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHhCCcchhhhHH-HHHH-HhhCHHHHHHHHHHHHHHHHHHHhc
Confidence 33 33344443332222 23667788899999887765222222212 3333 5568889999999999999999854
Q ss_pred C--ChHHHHHHHHHHhc
Q 001748 629 K--HQTTWLTVALLQLS 643 (1018)
Q Consensus 629 ~--n~rl~LE~lLlkL~ 643 (1018)
. |..+.++.++++..
T Consensus 298 ~~ln~elll~~lll~~~ 314 (319)
T PRK06090 298 SGLNTELLIMNWLIESR 314 (319)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 4 78889999888763
No 50
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.5e-32 Score=310.25 Aligned_cols=325 Identities=15% Similarity=0.182 Sum_probs=249.4
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCC----------CCCCcccc
Q 001748 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQK----------PCGLCREC 370 (1018)
Q Consensus 301 yRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~----------PCg~C~sc 370 (1018)
.+|++|++|+||+.+++.|.+++..|+++|+|||+||+|+||+++|.+||+.++|..+.... +|+.|+.|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 68999999999999999999999999999999999999999999999999999998754333 38999999
Q ss_pred ceeccCCCCccccccc---c------cccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcE
Q 001748 371 ALFSSGRSRDVKEVDS---V------RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHV 441 (1018)
Q Consensus 371 ~~i~sG~~~DvieIda---a------s~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~v 441 (1018)
+.+..|.|+|+..+.. . ....+++||++.+.+...|..++++|+||||+|.|+..++|+|||++|+|+.++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 9999999999998853 1 235689999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCc
Q 001748 442 VFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK 521 (1018)
Q Consensus 442 ifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~ 521 (1018)
+||++|+.++.++++|+|||+.+.|.+++.+++..||... +...+++++..++..++|+++.|+.+++.-.. .
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~~---~ 245 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAGGDGL---A 245 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhcccch---H
Confidence 9999999999999999999999999999999999999764 34456666688999999999999998864211 0
Q ss_pred cCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhccccc-chhHHH---
Q 001748 522 ITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKID--PMQLISQLANLIMDILAGKCLE-DCSEAR--- 595 (1018)
Q Consensus 522 IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~d--pl~LL~~L~~~LRdLL~~K~~~-~~~~i~--- 595 (1018)
+ .+ .+++++......+....+...+.+...+.+ ...++.+|..++.+++..+... ....+.
T Consensus 246 ~-~~------------~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~~ 312 (365)
T PRK07471 246 L-YR------------RLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPGE 312 (365)
T ss_pred H-HH------------HHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccchh
Confidence 0 11 122222222223333323333333222211 4457778888888887764431 011111
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHhccC
Q 001748 596 KNFFGKHTSEADMQKLSRALKILSETEKQLR-MSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 596 ~~~l~r~a~~~s~~~L~~aL~iLseae~qLK-~s~n~rl~LE~lLlkL~~~ 645 (1018)
...+.+.+......++.+..+.+.+.-.... .+-|+++.++.+++.|...
T Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~~ 363 (365)
T PRK07471 313 AALLARLAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 363 (365)
T ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHh
Confidence 1223333444456677777777776666665 5779999999999988643
No 51
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-32 Score=284.78 Aligned_cols=312 Identities=20% Similarity=0.256 Sum_probs=266.8
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
....+|.+||||..+.|+||.++.+..|.-..+.|..|| ++|.||||+||||.+.++|++|.....
T Consensus 12 ~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~-liisGpPG~GKTTsi~~LAr~LLG~~~------------- 77 (333)
T KOG0991|consen 12 KYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPN-LIISGPPGTGKTTSILCLARELLGDSY------------- 77 (333)
T ss_pred cccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCc-eEeeCCCCCchhhHHHHHHHHHhChhh-------------
Confidence 345669999999999999999999999999999999865 689999999999999999999974321
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhc----CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEe
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF----LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~----~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaT 447 (1018)
.-.+.|++++...|+|-+|.-+..+. ..| .+++||+|+||+|.|+..++.+|.++||-+...+.|++++
T Consensus 78 ------ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp-~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaC 150 (333)
T KOG0991|consen 78 ------KEAVLELNASDERGIDVVRNKIKMFAQKKVTLP-PGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALAC 150 (333)
T ss_pred ------hhHhhhccCccccccHHHHHHHHHHHHhhccCC-CCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhh
Confidence 22377899999999998887766543 223 4889999999999999999999999999999999999999
Q ss_pred cCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHH
Q 001748 448 PELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527 (1018)
Q Consensus 448 n~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV 527 (1018)
|.-.++.++|.|||..++|.++++.++..+|..+++.|++.++++.++.|...++||+|+++|.|+.....-+-++.+.|
T Consensus 151 N~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enV 230 (333)
T KOG0991|consen 151 NQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENV 230 (333)
T ss_pred cchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877778999999
Q ss_pred HHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCC
Q 001748 528 YELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEAD 607 (1018)
Q Consensus 528 ~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s 607 (1018)
-.+.+...+.-+-+++.+...++...+++.++++...|.+|..|+..+.+....+ .-...++.+
T Consensus 231 fKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~------~~~E~~rlE---------- 294 (333)
T KOG0991|consen 231 FKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNM------DVAESLRLE---------- 294 (333)
T ss_pred hhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------cHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999987776653332 111111112
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCC
Q 001748 608 MQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 608 ~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
.++.+--+--++-.+.+..+.|-.++.+||...
T Consensus 295 ------~ikeig~thmrI~eGv~s~LQl~glla~l~~~~ 327 (333)
T KOG0991|consen 295 ------FIKEIGLTHMRILEGVNSLLQLSGLLAKLCKVG 327 (333)
T ss_pred ------HHHHHhhHHhHHHhhHhHHHHHHHHHHHHHHhc
Confidence 223333333445567788888888888888764
No 52
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=7.4e-31 Score=292.90 Aligned_cols=293 Identities=18% Similarity=0.185 Sum_probs=231.9
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccc--cc--
Q 001748 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVD--SV-- 387 (1018)
Q Consensus 312 qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieId--aa-- 387 (1018)
+..+++.|..++..|+++|+|||+||+|+||+++|..||+.+.|..+ .+|+.|..|..+..|+|+|+..+. +.
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~---~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP---DPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC---CCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 67889999999999999999999999999999999999999999753 478999999999999999999883 22
Q ss_pred -----cccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCcc
Q 001748 388 -----RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462 (1018)
Q Consensus 388 -----s~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq 462 (1018)
...++++||++.+.+...|..+++||+|||++|.|+..++|+|||+|||||++++||++|+.++++++||+|||+
T Consensus 86 ~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 86 GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhhe
Confidence 235689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHH
Q 001748 463 KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDL 542 (1018)
Q Consensus 463 ~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~L 542 (1018)
.+.|.+++.+++..||.. .| +++..+..++..++|++..|...++.-.... ...++..
T Consensus 166 ~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~~~----------------r~~~~~~ 223 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLREDGLAL----------------RRAVAQD 223 (319)
T ss_pred EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhcCchHHH----------------HHHHHHH
Confidence 999999999999999974 24 4555566779999999999987775421110 0112222
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHHHHHHHHHHHH
Q 001748 543 LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETE 622 (1018)
Q Consensus 543 ldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~~aL~iLseae 622 (1018)
+..+..+.. ..+.....+-..+. . .++..+++|++..+.. ...+..+ ....|....+.+.+..
T Consensus 224 l~~~~~~~~-~~~~~a~~~~~~~~-~----~~l~~~~~Dll~~~~~--~~~~~~~---------~~~~L~~~~~~l~~~~ 286 (319)
T PRK08769 224 LEQIASGRA-GAVDVAQRWTNDGQ-A----DQRLRHAADLALAQAS--AGLTDPS---------RLHKLATWFDAANRTR 286 (319)
T ss_pred HHHhccCcc-cHHHHHHHHccCCc-H----HHHHHHHHHHHHHhcC--CcccChh---------hHHHHHHHHHHHHHHH
Confidence 222222222 23333333332221 1 5778889999887662 1111101 4567888888898999
Q ss_pred HHHhcCCChHHHHHHHHHHhccCC
Q 001748 623 KQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 623 ~qLK~s~n~rl~LE~lLlkL~~~~ 646 (1018)
..+..+.|+++.||.+++++....
T Consensus 287 ~~~~~~lN~~L~le~lll~~~~~~ 310 (319)
T PRK08769 287 DLLRTTVRADLAVTELLLAWREGE 310 (319)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999987653
No 53
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=2.9e-30 Score=289.49 Aligned_cols=302 Identities=19% Similarity=0.244 Sum_probs=240.9
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCC-CCCCCCccccceeccCCCCccccccccc--
Q 001748 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED-QKPCGLCRECALFSSGRSRDVKEVDSVR-- 388 (1018)
Q Consensus 312 qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~-~~PCg~C~sc~~i~sG~~~DvieIdaas-- 388 (1018)
+....++|... .++++|+|||+||+|+|||++|+.||+.++|..+.. ..|||.|++|+.+..|.|+|++++.+.+
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~ 83 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE 83 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc
Confidence 44555666655 579999999999999999999999999999987643 4699999999999999999999997642
Q ss_pred --------ccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcC
Q 001748 389 --------INRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSR 460 (1018)
Q Consensus 389 --------~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SR 460 (1018)
..++++||++.+.+...|..+++||+|||+++.|+..++++|+++||+|+.++.||++|++++.++++|+||
T Consensus 84 ~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR 163 (325)
T PRK08699 84 PENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR 163 (325)
T ss_pred ccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH
Confidence 257899999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred ccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHH
Q 001748 461 SQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELL 540 (1018)
Q Consensus 461 cq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If 540 (1018)
|+.+.|.+++.+++..||.+ .++... ++ .+ ..++|.+..+.. +...+. --
T Consensus 164 c~~~~~~~~~~~~~~~~L~~----~~~~~~-~~--~l-~~~~g~p~~~~~--------------~~~~~~--------r~ 213 (325)
T PRK08699 164 CRKMVLPAPSHEEALAYLRE----RGVAEP-EE--RL-AFHSGAPLFDEE--------------PELRAL--------RI 213 (325)
T ss_pred hhhhcCCCCCHHHHHHHHHh----cCCCcH-HH--HH-HHhCCChhhhcC--------------chHHHH--------HH
Confidence 99999999999999999964 354322 12 23 345676632210 000000 01
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccch--hHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 001748 541 DLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC--SEARKNFFGKHTSEADMQKLSRALKIL 618 (1018)
Q Consensus 541 ~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~--~~i~~~~l~r~a~~~s~~~L~~aL~iL 618 (1018)
++++.+...+....+.....+...+.+...++..|..+++|++..+..... ..-..+.+...+.+++...|.++++.+
T Consensus 214 ~~~~~l~~~~~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~~~~~d~~~~l~~~a~~~~~~~L~~~~~~l 293 (325)
T PRK08699 214 KLLDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQTASGFRPRNVFAAEDML 293 (325)
T ss_pred HHHHHHHccChhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCcccCHhHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 223334455555666666666666778889999999999999988754221 111235566678899999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhccC
Q 001748 619 SETEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 619 seae~qLK~s~n~rl~LE~lLlkL~~~ 645 (1018)
.++...++.+.|+++.||.+++++...
T Consensus 294 ~~~~~~l~~n~n~~L~le~lll~~~~~ 320 (325)
T PRK08699 294 KQLAPYGFHTLNVKMQIEHLLINYLEL 320 (325)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998654
No 54
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.97 E-value=1.2e-29 Score=281.98 Aligned_cols=296 Identities=18% Similarity=0.227 Sum_probs=237.1
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
....+|.+||||++|++++||++++..|..+++.+++++.+||+||+|+|||++|+++++.+++
T Consensus 6 ~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~---------------- 69 (316)
T PHA02544 6 PNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA---------------- 69 (316)
T ss_pred CCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc----------------
Confidence 3456899999999999999999999999999999999999999999999999999999998742
Q ss_pred eeccCCCCcccccccccccchhHHHHHH-HHhcCCCCCCCceEEEEeCcccc-CHHHHHHHHHHHhccCCcEEEEEEecC
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLM-KSAFLPPFSSRFKIFIIDECQLL-HGETWATVLNSLENISQHVVFVMITPE 449 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLi-e~a~~~P~~g~~kVLIIDEaD~L-s~~a~naLLk~LEepp~~vifILaTn~ 449 (1018)
++.+++.... .++.+++.+ +.+...+..+.++||||||+|.+ ..++++.|..++++++.++.||++++.
T Consensus 70 --------~~~~i~~~~~-~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 70 --------EVLFVNGSDC-RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred --------cceEeccCcc-cHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 1233333331 244555533 33334556677899999999999 666788888889999999999999999
Q ss_pred CCcchHHHhcCccEEEeCCCChhHHHHH-------HHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCcc
Q 001748 450 LDKLPRSALSRSQKYHFPKIKDGDIASR-------LRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKI 522 (1018)
Q Consensus 450 ~~kL~~tI~SRcq~I~F~~ls~eEI~~~-------L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~I 522 (1018)
..+++++|++||..+.|+.++.++...+ +..++.++|+.++++++..+++...|++|.+++.|+.++. ++.|
T Consensus 141 ~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~i 219 (316)
T PHA02544 141 KNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGKI 219 (316)
T ss_pred hhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCC
Confidence 9999999999999999999998887655 4445667899999999999999999999999999998764 4679
Q ss_pred CHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhh
Q 001748 523 TLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKH 602 (1018)
Q Consensus 523 T~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~ 602 (1018)
+.+++..+. ...++++++++...|...... .... -+.++..++..+...+.
T Consensus 220 ~~~~l~~~~----~~~~~~l~~~l~~~d~~~~~~-~~~~--~~~~~~~~l~~~~~~~~---------------------- 270 (316)
T PHA02544 220 DAGILSEVT----NSDIDDVVEALKAKDFKAVRA-LAPN--YANDYASFVGKLYDELY---------------------- 270 (316)
T ss_pred CHHHHHHhh----HHHHHHHHHHHHcCCHHHHHH-HHHH--hccCHHHHHHHHHHHHH----------------------
Confidence 998887755 567888999888887665544 2221 25566566555443322
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhc
Q 001748 603 TSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643 (1018)
Q Consensus 603 a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~ 643 (1018)
..+....+.++++.+.+.+..+..+.++.+.||.++++++
T Consensus 271 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~ 310 (316)
T PHA02544 271 -PQVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLM 310 (316)
T ss_pred -HhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1234566888999999999999999999999999999986
No 55
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=5.1e-30 Score=290.13 Aligned_cols=216 Identities=19% Similarity=0.259 Sum_probs=194.6
Q ss_pred cccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccC-----CC-CCCCCCCcccc
Q 001748 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS-----LE-DQKPCGLCREC 370 (1018)
Q Consensus 297 L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~-----~~-~~~PCg~C~sc 370 (1018)
+.....|..|++|+||+++...|..++..|+++|++||+||+|+|||++|+.+|+.+.|.. +. ...||+.|..|
T Consensus 13 ~~~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c 92 (351)
T PRK09112 13 LDGVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVW 92 (351)
T ss_pred ccCCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHH
Confidence 4455789999999999999999999999999999999999999999999999999999942 22 23599999999
Q ss_pred ceeccCCCCcccccccc---------cccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcE
Q 001748 371 ALFSSGRSRDVKEVDSV---------RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHV 441 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaa---------s~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~v 441 (1018)
+.+..|.|+|+..+... ...++++||++.+.+...+..++++|+||||+|.|+..++|+||++||+|+.++
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 99999999998866421 235689999999999888999999999999999999999999999999999999
Q ss_pred EEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q 001748 442 VFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ 514 (1018)
Q Consensus 442 ifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeq 514 (1018)
+||++|+.+.+++++|+|||+.+.|.+++.+++..||.+.....+ ++++++..+++.++|++|.|+++++.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999998654433 77999999999999999999998865
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.1e-29 Score=280.68 Aligned_cols=256 Identities=24% Similarity=0.399 Sum_probs=219.4
Q ss_pred cccccccCCCCcccccCcHHHH---HHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 295 WSLSQKFRPNFFDELVGQNVVV---RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv---~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
.||..+.||++|+|+|||++++ ..|.++|+.+.++ .++|||||||||||+|++||+..++
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~-SmIl~GPPG~GKTTlA~liA~~~~~---------------- 74 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLH-SMILWGPPGTGKTTLARLIAGTTNA---------------- 74 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCc-eeEEECCCCCCHHHHHHHHHHhhCC----------------
Confidence 4899999999999999999999 6799999999985 5699999999999999999998864
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~ 451 (1018)
.+..+++.. .++.++|++++.+...-..+++.|+||||+|+|++..|.+||..+|. +.++||.+|++.+
T Consensus 75 --------~f~~~sAv~-~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENP 143 (436)
T COG2256 75 --------AFEALSAVT-SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENP 143 (436)
T ss_pred --------ceEEecccc-ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCC
Confidence 244555443 47789999999997555568899999999999999999999999998 7899999998876
Q ss_pred --cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH--hcCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC---
Q 001748 452 --KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE--EAIN-----FDQAALDFIAAKSNGSIRDAEMLLDQLSLLG--- 519 (1018)
Q Consensus 452 --kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk--egI~-----Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g--- 519 (1018)
.+.++|+|||+++.|++++.+++...|++.+.. .|+. ++++++++|+..++||.|.+++.||.+....
T Consensus 144 sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~ 223 (436)
T COG2256 144 SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPD 223 (436)
T ss_pred CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCC
Confidence 688999999999999999999999999995443 4554 7899999999999999999999999987653
Q ss_pred CccCHHHHHHHhccC----------ChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 520 KKITLSLAYELIGIV----------SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL 578 (1018)
Q Consensus 520 ~~IT~edV~ellg~v----------~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~ 578 (1018)
..++.++++++++.. ..+.+..|...+...|+..++..+.+++..|.||..|.+-|...
T Consensus 224 ~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~ 292 (436)
T COG2256 224 EVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRI 292 (436)
T ss_pred cccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 245689999887642 23346667788889999999999999999999999997766544
No 57
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=2.8e-29 Score=276.47 Aligned_cols=281 Identities=21% Similarity=0.353 Sum_probs=211.9
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccccc-c
Q 001748 311 GQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVR-I 389 (1018)
Q Consensus 311 Gqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas-~ 389 (1018)
.|..+++.|.+++..++++|+|||+|| .||+++|+.||+.+.|.++....|||.|.+|+.+..|.|+|+..+.+.+ .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 588999999999999999999999996 6899999999999999987777899999999999999999999997654 3
Q ss_pred cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCC
Q 001748 390 NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKI 469 (1018)
Q Consensus 390 ~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~l 469 (1018)
.++++||++.+.+...|..+++||+|||++|.|+..+.|+|||+|||||++++||++|+.++++++||+|||+.+.|++
T Consensus 84 I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~- 162 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK- 162 (290)
T ss_pred CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHHHHHHHcC
Q 001748 470 KDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSS 549 (1018)
Q Consensus 470 s~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~Lldail~~ 549 (1018)
+.+++.++|. ++|+ +.+....++..+ |++..|+..++.-... ++ ...+..+++.+...
T Consensus 163 ~~~~~~~~L~----~~g~--~~~~a~~la~~~-~s~~~A~~l~~~~~~~----------~~-----~~~~~~~~~~l~~~ 220 (290)
T PRK07276 163 NEAYLIQLLE----QKGL--LKTQAELLAKLA-QSTSEAEKLAQNKKFL----------EL-----IDQAERFVTILLKD 220 (290)
T ss_pred cHHHHHHHHH----HcCC--ChHHHHHHHHHC-CCHHHHHHHhCChhHH----------HH-----HHHHHHHHHHhccC
Confidence 6777777664 4564 344445555555 6899888877421111 00 11122222222222
Q ss_pred ChHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHh
Q 001748 550 DTSNTVIRARELMRS---KIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLR 626 (1018)
Q Consensus 550 d~~~al~~l~eLl~~---G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK 626 (1018)
+...++. +.+++.. ...-..++..|..++.. .+..+.+.+.+..+.+.+....
T Consensus 221 ~~~~~l~-~~~l~~~~~~~e~q~~~l~~l~~~~~~-----------------------~~~~~~~~~~L~~~~~~r~~w~ 276 (290)
T PRK07276 221 KDEAYLQ-VARLVQLADEKEEQDQVLTLLTLLLAQ-----------------------ERMQVNVRTQLEAVYQARKMWQ 276 (290)
T ss_pred hHHHHHH-HHHHHHhhhcHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhHHHHHH
Confidence 2222222 2233221 12222233333322211 1122456777888889999999
Q ss_pred cCCChHHHHHHHHH
Q 001748 627 MSKHQTTWLTVALL 640 (1018)
Q Consensus 627 ~s~n~rl~LE~lLl 640 (1018)
.|++.+..||.+++
T Consensus 277 ~Nv~~~~~le~l~l 290 (290)
T PRK07276 277 SNVSFQNALEYMVL 290 (290)
T ss_pred hccCHHHHHHHHhC
Confidence 99999999999874
No 58
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.4e-28 Score=270.18 Aligned_cols=268 Identities=18% Similarity=0.222 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccccc---c
Q 001748 313 NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVR---I 389 (1018)
Q Consensus 313 e~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas---~ 389 (1018)
+...+.|.+++..|+++|+|||+||+|+||+++|..||+.+.|.... ..|+.+..|.|||+..+.+.. .
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~--------~~c~~~~~~~HPD~~~i~p~~~~~~ 74 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSP--------EAAYKISQKIHPDIHEFSPQGKGRL 74 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc--------cHHHHHhcCCCCCEEEEecCCCCCc
Confidence 35678999999999999999999999999999999999999997421 247888999999998886543 2
Q ss_pred cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCC
Q 001748 390 NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKI 469 (1018)
Q Consensus 390 ~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~l 469 (1018)
.+++++|++.+.+...|+.+.+||+|||++|.|+.+++|+|||+|||||++++||++|+.++++++||+|||+.+.|+++
T Consensus 75 I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 75 HSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHH--HHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHHHHHHH
Q 001748 470 KDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRD--AEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLAL 547 (1018)
Q Consensus 470 s~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~--Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~Lldail 547 (1018)
. ...++++.+..++..++|+++. +...++. . .+.. .
T Consensus 155 ~---------------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~----~----------------~~~~----~--- 192 (290)
T PRK05917 155 E---------------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKG----S----------------ADTD----K--- 192 (290)
T ss_pred h---------------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhc----c----------------hHHH----H---
Confidence 2 2247888889999999999861 1111111 0 0000 0
Q ss_pred cCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh-HHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHh
Q 001748 548 SSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-EARKNFFGKHTSEADMQKLSRALKILSETEKQLR 626 (1018)
Q Consensus 548 ~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~-~i~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK 626 (1018)
... +.....++..+..++||++..+...... .+..++..... +++...+.++++.+.++.+.++
T Consensus 193 --------~~~------re~~~~~L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~-~~~~~~l~~~i~~i~~a~~~l~ 257 (290)
T PRK05917 193 --------QVL------RDKTKAMLEVLLQLFRDRFLLALKVPASALAYPDLLKEIL-TLPVLPLEKVLSIIERAVQALD 257 (290)
T ss_pred --------HHH------HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccHHHHHHHH-hcccccHHHHHHHHHHHHHHHH
Confidence 000 2234567888899999998877654432 22333333321 1344448899999999999999
Q ss_pred cCCChHHHHHHHHHHhccC
Q 001748 627 MSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 627 ~s~n~rl~LE~lLlkL~~~ 645 (1018)
.|.|+++.+|.++++|...
T Consensus 258 ~N~N~~l~le~l~l~l~~~ 276 (290)
T PRK05917 258 NSSSAPSCLEWVALQLWSL 276 (290)
T ss_pred hcCCHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=99.96 E-value=1.8e-27 Score=280.21 Aligned_cols=294 Identities=22% Similarity=0.291 Sum_probs=231.6
Q ss_pred ccccccCCCCcccccCcHHHHHHHHHHHH---cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRSLLSAIS---RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 296 ~L~eKyRP~tFddLVGqe~iv~~L~~aIk---~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
+|.+||||++|++++|++.++..|..++. .|++++++||+||||+|||++|+++|+.+++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~----------------- 65 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW----------------- 65 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----------------
Confidence 69999999999999999999999999887 5666889999999999999999999998852
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhc-CCCCCC-CceEEEEeCccccCH----HHHHHHHHHHhccCCcEEEEEE
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSS-RFKIFIIDECQLLHG----ETWATVLNSLENISQHVVFVMI 446 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g-~~kVLIIDEaD~Ls~----~a~naLLk~LEepp~~vifILa 446 (1018)
+++++++......+.++.++..+. ..++.+ .++||||||+|.|.. ..+++|+++++.. ...+|++
T Consensus 66 -------~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli 136 (482)
T PRK04195 66 -------EVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILT 136 (482)
T ss_pred -------CEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEe
Confidence 245555555445566777776654 445554 789999999999986 5789999999964 3457788
Q ss_pred ecCCCcchH-HHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHH
Q 001748 447 TPELDKLPR-SALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLS 525 (1018)
Q Consensus 447 Tn~~~kL~~-tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~e 525 (1018)
++++..+.. +|++||..+.|++++..++..+|+.++.++|+.+++++++.|++.++||+|.+++.|+.++...+.||.+
T Consensus 137 ~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~ 216 (482)
T PRK04195 137 ANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLE 216 (482)
T ss_pred ccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHH
Confidence 888877766 8999999999999999999999999999999999999999999999999999999999966656789999
Q ss_pred HHHHHhccCChhHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhh
Q 001748 526 LAYELIGIVSDDELLDLLDLALS-SDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTS 604 (1018)
Q Consensus 526 dV~ellg~v~ee~If~Lldail~-~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~ 604 (1018)
+|..++....+.++|+++++++. ++...++..+ .....+|..++.+|...+...
T Consensus 217 ~v~~~~~~d~~~~if~~l~~i~~~k~~~~a~~~~---~~~~~~~~~i~~~l~en~~~~---------------------- 271 (482)
T PRK04195 217 DVKTLGRRDREESIFDALDAVFKARNADQALEAS---YDVDEDPDDLIEWIDENIPKE---------------------- 271 (482)
T ss_pred HHHHhhcCCCCCCHHHHHHHHHCCCCHHHHHHHH---HcccCCHHHHHHHHHhccccc----------------------
Confidence 99999877778899999999998 5665555433 234567776666554443110
Q ss_pred cCCHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHh
Q 001748 605 EADMQKLSRALKILSETEKQL---RMSKHQTTWLTVALLQL 642 (1018)
Q Consensus 605 ~~s~~~L~~aL~iLseae~qL---K~s~n~rl~LE~lLlkL 642 (1018)
.-+++.+.+++..|++++.-+ +.+.+ ..|+.....+
T Consensus 272 ~~~~~~~~~a~~~ls~ad~~~~~~~~~~~--~~l~~~~~~~ 310 (482)
T PRK04195 272 YDDPEDIARAYDALSRADIFLGRVKRTQN--YDLWRYASDL 310 (482)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHhcCC--cchHHHHHHH
Confidence 123466777778887777654 33334 3444444444
No 60
>PRK04132 replication factor C small subunit; Provisional
Probab=99.96 E-value=3.2e-27 Score=289.05 Aligned_cols=273 Identities=20% Similarity=0.275 Sum_probs=242.9
Q ss_pred EEEEC--CCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhc-CCCCC
Q 001748 332 YLFHG--PRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFS 408 (1018)
Q Consensus 332 yLf~G--PpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~ 408 (1018)
.++.| |.+.||||+|+++|+.+... +...++.+++++...+++.||++++.+. ..|..
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~-------------------~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~ 627 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGE-------------------NWRHNFLELNASDERGINVIREKVKEFARTKPIG 627 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcc-------------------cccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC
Confidence 46679 99999999999999998532 1234688999998889999999997754 56654
Q ss_pred C-CceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcC
Q 001748 409 S-RFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAI 487 (1018)
Q Consensus 409 g-~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI 487 (1018)
+ +++|+||||+|+|+.+++++|+++||+|+.++.||++|+++.+++++|+|||+.+.|.+++.+++..+|+.+++++|+
T Consensus 628 ~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi 707 (846)
T PRK04132 628 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 707 (846)
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 4 679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHH-HcCC
Q 001748 488 NFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELM-RSKI 566 (1018)
Q Consensus 488 ~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl-~~G~ 566 (1018)
.++++++..|+..++||+|.|++.|+.++.....||.++|.++.+....+.++++++.++.++...+...+.+++ ..|.
T Consensus 708 ~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~ 787 (846)
T PRK04132 708 ELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGL 787 (846)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999887777899999999999999999999999999999999999999987 7899
Q ss_pred CHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccC
Q 001748 567 DPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 567 dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~ 645 (1018)
++..++..|...+.+. .++.....+++..+.+.+..+..+.++.+.|+.++.+++.+
T Consensus 788 ~~~~iL~~l~~~l~~~----------------------~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~ 844 (846)
T PRK04132 788 SGEDVLVQMHREVFNL----------------------PIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM 844 (846)
T ss_pred CHHHHHHHHHHHHHhc----------------------CCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9999988887775321 12233355788899999999999999999999999998754
No 61
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.96 E-value=3.5e-27 Score=272.87 Aligned_cols=255 Identities=27% Similarity=0.392 Sum_probs=210.5
Q ss_pred ccccccCCCCcccccCcHHHHHH---HHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRS---LLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 296 ~L~eKyRP~tFddLVGqe~iv~~---L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
||++||||++|+|+|||++++.. |.+++..++. +.+||+||+|||||++|+++|+.+.+
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~-~~ilL~GppGtGKTtLA~~ia~~~~~----------------- 62 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRL-SSMILWGPPGTGKTTLARIIAGATDA----------------- 62 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCC-ceEEEECCCCCCHHHHHHHHHHHhCC-----------------
Confidence 69999999999999999999876 9999988776 46789999999999999999998742
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC-
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD- 451 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~- 451 (1018)
++..+++. ..+++.++++++.+......++++||||||+|.|+...+++|++++|+ ..+++|++|+...
T Consensus 63 -------~~~~l~a~-~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~ 132 (413)
T PRK13342 63 -------PFEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPS 132 (413)
T ss_pred -------CEEEEecc-cccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChh
Confidence 12333332 234567888887775444456789999999999999999999999997 5677777766533
Q ss_pred -cchHHHhcCccEEEeCCCChhHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHH
Q 001748 452 -KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEE--AI-NFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527 (1018)
Q Consensus 452 -kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakke--gI-~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV 527 (1018)
.+.++|+|||+.+.|.+++.+++..+|+..+... ++ .+++++++.|++.++||+|.+++.|+.+...+..||.+++
T Consensus 133 ~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v 212 (413)
T PRK13342 133 FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELL 212 (413)
T ss_pred hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHH
Confidence 7889999999999999999999999999988753 55 8999999999999999999999999998777778999999
Q ss_pred HHHhccCC------hhHHHHHH----HHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 528 YELIGIVS------DDELLDLL----DLALSSDTSNTVIRARELMRSKIDPMQLISQLANL 578 (1018)
Q Consensus 528 ~ellg~v~------ee~If~Ll----dail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~ 578 (1018)
.++++... .+..++++ +.+...|...++..+..++..|++|..|++.|...
T Consensus 213 ~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~ 273 (413)
T PRK13342 213 EEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVII 273 (413)
T ss_pred HHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99987531 12344444 45555899999999999999999999998776554
No 62
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.95 E-value=8.5e-28 Score=244.57 Aligned_cols=159 Identities=30% Similarity=0.534 Sum_probs=137.3
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccc-
Q 001748 311 GQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRI- 389 (1018)
Q Consensus 311 Gqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~- 389 (1018)
||+.+++.|.++++.++++|+|||+||+|+||+++|+.||+.+.|...... ||+.|..|+.+..+.++|+.++.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHHHHHhccCcceEEEeccccc
Confidence 899999999999999999999999999999999999999999999887655 999999999999999999999987654
Q ss_pred --cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeC
Q 001748 390 --NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFP 467 (1018)
Q Consensus 390 --~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~ 467 (1018)
.++++||++.+.+...|..+.+||+||||+|.|+.+++|+|||+||+||.+++|||+|++++++++||+|||+.+.|.
T Consensus 80 ~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~ 159 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFR 159 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE-
T ss_pred chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 001748 468 KIK 470 (1018)
Q Consensus 468 ~ls 470 (1018)
+++
T Consensus 160 ~ls 162 (162)
T PF13177_consen 160 PLS 162 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 874
No 63
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=1.1e-25 Score=249.70 Aligned_cols=290 Identities=15% Similarity=0.185 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCC-ccccccc-cccc
Q 001748 313 NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSR-DVKEVDS-VRIN 390 (1018)
Q Consensus 313 e~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~-DvieIda-as~~ 390 (1018)
+.+++.|++++++|+++|+|||+|++|+||+.+|+.|++.+.|..+.. +..+.|+ ++..++. ....
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~------------~~~~~~p~n~~~~d~~g~~i 69 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN------------LNEQELPANIILFDIFDKDL 69 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC------------CCCCCCCcceEEeccCCCcC
Confidence 457889999999999999999999999999999999999999865321 1113344 4445542 1335
Q ss_pred chhHHHHHHHHhcCCCCC-CCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCC
Q 001748 391 RSDRVGSLMKSAFLPPFS-SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKI 469 (1018)
Q Consensus 391 ~vd~IReLie~a~~~P~~-g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~l 469 (1018)
++++|+++.+.+...|+. +++||+|||+++.|+..++|+|||+||+||++++||++|+.+.++++||+|||+++.|.++
T Consensus 70 ~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 70 SKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred CHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 678999999999888866 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHHHHHHHcC
Q 001748 470 KDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSS 549 (1018)
Q Consensus 470 s~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~Lldail~~ 549 (1018)
+.+++..||... + ++++....++..++ ++..|+..+..-. .+..+ .+.+++..+..
T Consensus 150 ~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~~~~-------~~~~~---------~~~~~l~~~~~- 205 (299)
T PRK07132 150 DQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYINKES-------ENLLK---------KFEEALNKSLK- 205 (299)
T ss_pred CHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHhcCC-------HHHHH---------HHHHHHHHhhh-
Confidence 999999998742 3 66777777777776 5999988765421 11111 12222222222
Q ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh-HHHH-HHHHhhhhcCCHHHHHHHHHHHHHHHHHHhc
Q 001748 550 DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS-EARK-NFFGKHTSEADMQKLSRALKILSETEKQLRM 627 (1018)
Q Consensus 550 d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~-~i~~-~~l~r~a~~~s~~~L~~aL~iLseae~qLK~ 627 (1018)
+....+........ +.....++..|.-++||++..+...... .+.. ..+.+++ ++...| +..+.++...+++
T Consensus 206 ~~~~l~~~~~~~~~-ke~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~~~~i~~~~--~s~~~l---i~~i~~~~~~L~~ 279 (299)
T PRK07132 206 EKYELILFLNKKLT-KENALFLLKLLKFFFKSIFANKKKKNPKNIKVAFSKKKKFK--IEFFEL---ITIIDEFLNSLET 279 (299)
T ss_pred hHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHhccCChHhHhhHHHHHHHHh--cCHHHH---HHHHHHHHHHHHH
Confidence 22222222222332 4556778888999999999887765543 1222 3444444 666666 8888999999999
Q ss_pred CCChHHHHHHHHHHhcc
Q 001748 628 SKHQTTWLTVALLQLSS 644 (1018)
Q Consensus 628 s~n~rl~LE~lLlkL~~ 644 (1018)
++|.++.+|.++++|..
T Consensus 280 N~N~~l~~e~lll~l~e 296 (299)
T PRK07132 280 NENFNLQKQAFLVKIYE 296 (299)
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 99999999999999864
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.95 E-value=2.2e-27 Score=245.63 Aligned_cols=186 Identities=27% Similarity=0.474 Sum_probs=172.3
Q ss_pred HHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccccc-ccchhHH
Q 001748 317 RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVR-INRSDRV 395 (1018)
Q Consensus 317 ~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas-~~~vd~I 395 (1018)
+.|.+.+..++++|+|||+||+|+|||++|+.|++.+.|.......||+.|..|..+..+.++|+..+.... ..+++.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 568899999999999999999999999999999999999877778899999999999999999987776533 3567899
Q ss_pred HHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCCChhHHH
Q 001748 396 GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475 (1018)
Q Consensus 396 ReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~ 475 (1018)
+++++.+...|+.+.++|+||||+|.|+..++++|+++||+++.+++||++|+++.+++++|+|||+.+.|.+++.+++.
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~ 161 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALL 161 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHH
Q 001748 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDA 508 (1018)
Q Consensus 476 ~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~A 508 (1018)
.||.+. | ++++++++|+..++|++|.|
T Consensus 162 ~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 162 QWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 999875 4 78999999999999999864
No 65
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.5e-26 Score=251.58 Aligned_cols=201 Identities=31% Similarity=0.469 Sum_probs=181.0
Q ss_pred ccccCcHHHHHHHHHHHH-cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccc
Q 001748 307 DELVGQNVVVRSLLSAIS-RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVD 385 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk-~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieId 385 (1018)
++++|+++.+..+..++. .++++|+|||+||+|+|||++|.++|+.+.|..+....+|+.|..|..+..|.++|+.+++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367888888888888877 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc----hhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCc
Q 001748 386 SVRINR----SDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRS 461 (1018)
Q Consensus 386 aas~~~----vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRc 461 (1018)
+..... ++.|+++.+.....+..++++||||||+|.|+.+++|+|++++|+|+.+++||++|+++.++.++|+|||
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc 160 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRC 160 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcc
Confidence 876654 6789999998888888899999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Q 001748 462 QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL 518 (1018)
Q Consensus 462 q~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~ 518 (1018)
+.+.|++++......++ + ++++..++..+.|++|.+++.++.++..
T Consensus 161 ~~i~f~~~~~~~~i~~~------e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 161 QRIRFKPPSRLEAIAWL------E-----DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred eeeecCCchHHHHHHHh------h-----ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999995544443333 2 6778889999999999999999998776
No 66
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.95 E-value=4.4e-26 Score=277.72 Aligned_cols=258 Identities=21% Similarity=0.299 Sum_probs=210.4
Q ss_pred CCcccccccCCCCcccccCcHHHH---HHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccc
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVV---RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv---~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~s 369 (1018)
...||++||||++|+|++||++++ ..|++++..++++ .+||+||||||||++|+++|+.+++.
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~-slLL~GPpGtGKTTLA~aIA~~~~~~------------- 79 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVG-SLILYGPPGVGKTTLARIIANHTRAH------------- 79 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCc-eEEEECCCCCCHHHHHHHHHHHhcCc-------------
Confidence 345899999999999999999999 4788899988875 46999999999999999999987532
Q ss_pred cceeccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEec
Q 001748 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITP 448 (1018)
Q Consensus 370 c~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn 448 (1018)
+..+++. ..+++.++++++.+. ..+..+.+.|+||||+|.|+...+++|+..+|+ ..+++|.+|+
T Consensus 80 -----------f~~lna~-~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTT 145 (725)
T PRK13341 80 -----------FSSLNAV-LAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATT 145 (725)
T ss_pred -----------ceeehhh-hhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecC
Confidence 1122222 123345555555542 223345678999999999999999999999987 5677777776
Q ss_pred CCC--cchHHHhcCccEEEeCCCChhHHHHHHHHHHH-------HhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-
Q 001748 449 ELD--KLPRSALSRSQKYHFPKIKDGDIASRLRRICV-------EEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL- 518 (1018)
Q Consensus 449 ~~~--kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iak-------kegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~- 518 (1018)
... .+.++++|||.++.|++++.+++..+|+.++. .+++.++++++++|++.++||+|.+++.|+.++..
T Consensus 146 enp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~ 225 (725)
T PRK13341 146 ENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVEST 225 (725)
T ss_pred CChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 543 68899999999999999999999999999887 46789999999999999999999999999997643
Q ss_pred --C--C--ccCHHHHHHHhc----------cCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 519 --G--K--KITLSLAYELIG----------IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANL 578 (1018)
Q Consensus 519 --g--~--~IT~edV~ellg----------~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~ 578 (1018)
+ + .||.+.+++++. ....+.|..+++.+..+|...++..+.+++..|++|..|++.|...
T Consensus 226 ~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~ 301 (725)
T PRK13341 226 PPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIA 301 (725)
T ss_pred ccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1 278888888653 4566789999999999999999999999999999999998776554
No 67
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.94 E-value=1.9e-24 Score=242.00 Aligned_cols=294 Identities=18% Similarity=0.237 Sum_probs=245.8
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSS 409 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g 409 (1018)
+.|||||+....+...++.+.+.+..+. ...+++..+++... +.+.++++.+.+.|+++
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~------------------~~~fn~~~~d~~~~---~~~~~~~~~~~t~pff~ 60 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPE------------------WKSFNYSRLDGDDA---DQAIQALNEAMTPPFGS 60 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCch------------------hhhcchhhcCCccc---hHHHHHHHHhcCCCCCC
Confidence 5799999999999999998887763211 12345555554432 34678888999999999
Q ss_pred CceEEEEeCcccc---CHHHHHHHHHHHhccCCcEEEEEEec-CCC---cchHHHhcCccEEEeCCC---ChhHHHHHHH
Q 001748 410 RFKIFIIDECQLL---HGETWATVLNSLENISQHVVFVMITP-ELD---KLPRSALSRSQKYHFPKI---KDGDIASRLR 479 (1018)
Q Consensus 410 ~~kVLIIDEaD~L---s~~a~naLLk~LEepp~~vifILaTn-~~~---kL~~tI~SRcq~I~F~~l---s~eEI~~~L~ 479 (1018)
++++|+|++++.+ ..+..++|..+++.+++++++|+++. .++ ++...+...+.+..|.++ +.+++..|++
T Consensus 61 ~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~ 140 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVE 140 (326)
T ss_pred CceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHH
Confidence 9999999998765 56778899999999999998888754 332 455677777888888766 4567999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh----CCccCHHHHHHHhccCChhHHHHHHHHHHcCChHHHH
Q 001748 480 RICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL----GKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTV 555 (1018)
Q Consensus 480 ~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~----g~~IT~edV~ellg~v~ee~If~Lldail~~d~~~al 555 (1018)
..+++.|+.++++|+++|+..+++|++.+.++|++++++ ++.||.++|++++... ++++|+|+++++.++...++
T Consensus 141 ~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~ 219 (326)
T PRK07452 141 RTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKAL 219 (326)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999887 3479999999999876 68999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc-----hh----------HHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 001748 556 IRARELMRSKIDPMQLISQLANLIMDILAGKCLED-----CS----------EARKNFFGKHTSEADMQKLSRALKILSE 620 (1018)
Q Consensus 556 ~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~-----~~----------~i~~~~l~r~a~~~s~~~L~~aL~iLse 620 (1018)
..+++++..|++|+.|+..|.+++|.++.++.... .. +....++.+++++|+.+.|.+++..|.+
T Consensus 220 ~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~ 299 (326)
T PRK07452 220 ALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLD 299 (326)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999887764311 11 1122445667899999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHhccC
Q 001748 621 TEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 621 ae~qLK~s~n~rl~LE~lLlkL~~~ 645 (1018)
+|.++|++.++..+||.+++++|.+
T Consensus 300 ~D~~iK~g~~~~~~le~~i~~~~~~ 324 (326)
T PRK07452 300 LEASLKQGANPINALQDKLIELCQL 324 (326)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHh
Confidence 9999999998888999999999975
No 68
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.94 E-value=8.9e-26 Score=247.12 Aligned_cols=263 Identities=22% Similarity=0.297 Sum_probs=219.2
Q ss_pred CCCCcccccccCCCCcccccCcHHHH---HHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 001748 291 SETPWSLSQKFRPNFFDELVGQNVVV---RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLC 367 (1018)
Q Consensus 291 ~~~~~~L~eKyRP~tFddLVGqe~iv---~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C 367 (1018)
.-...||.++.||++++|+|||++++ ..|+..|++++++ .++|+||||||||++|+.|+..-..
T Consensus 122 ~~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ip-SmIlWGppG~GKTtlArlia~tsk~------------ 188 (554)
T KOG2028|consen 122 MLQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIP-SMILWGPPGTGKTTLARLIASTSKK------------ 188 (554)
T ss_pred HhccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCC-ceEEecCCCCchHHHHHHHHhhcCC------------
Confidence 34567999999999999999999998 5688899999985 5689999999999999999986431
Q ss_pred cccceeccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEE
Q 001748 368 RECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMI 446 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILa 446 (1018)
.+.-++++.+. ..++.++|++++.++ ...+..++.|+||||+|+++...+..||..+|. +.+.||.+
T Consensus 189 ---------~SyrfvelSAt-~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGA 256 (554)
T KOG2028|consen 189 ---------HSYRFVELSAT-NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGA 256 (554)
T ss_pred ---------CceEEEEEecc-ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceecc--CceEEEec
Confidence 11234455443 345688999999987 455667888999999999999999999999998 78999999
Q ss_pred ecCCC--cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH----h----c-----CCCCHHHHHHHHHHcCCCHHHHHHH
Q 001748 447 TPELD--KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE----E----A-----INFDQAALDFIAAKSNGSIRDAEML 511 (1018)
Q Consensus 447 Tn~~~--kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk----e----g-----I~Id~eAL~~LA~~s~GnLR~Al~l 511 (1018)
|++.. .+..+|+|||.++-+.+++.+.+..+|.+...- + + +.+++.++++|+..++||.|.|+|.
T Consensus 257 TTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~ 336 (554)
T KOG2028|consen 257 TTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNA 336 (554)
T ss_pred ccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 98876 678999999999999999999999999885541 1 1 2478899999999999999999999
Q ss_pred HHHHHh----hCC-----ccCHHHHHHHhc----------cCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHH
Q 001748 512 LDQLSL----LGK-----KITLSLAYELIG----------IVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLI 572 (1018)
Q Consensus 512 LeqLsl----~g~-----~IT~edV~ellg----------~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL 572 (1018)
|+.... ..+ .++.+||++.+. ....+.|..|-..+..+|...++..+.++++.|++|+++.
T Consensus 337 Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVA 416 (554)
T KOG2028|consen 337 LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVA 416 (554)
T ss_pred HHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHH
Confidence 998722 122 689999998763 3455667888889999999999999999999999999998
Q ss_pred HHHHHH
Q 001748 573 SQLANL 578 (1018)
Q Consensus 573 ~~L~~~ 578 (1018)
+.|.++
T Consensus 417 RRlvR~ 422 (554)
T KOG2028|consen 417 RRLVRF 422 (554)
T ss_pred HHHHHH
Confidence 887776
No 69
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=2.1e-25 Score=240.96 Aligned_cols=210 Identities=19% Similarity=0.232 Sum_probs=170.0
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccccc-ccchhHHHHHHHHhcCC
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVR-INRSDRVGSLMKSAFLP 405 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas-~~~vd~IReLie~a~~~ 405 (1018)
.++|+|||+||.|+||..+|.++|+.+.|... ..|||.|++|+.+..|.|+|+..+.+.. ..+++++|++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccC
Confidence 46899999999999999999999999999874 3599999999999999999999875543 46889999999999877
Q ss_pred CCC-CCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCC----------ChhHH
Q 001748 406 PFS-SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKI----------KDGDI 474 (1018)
Q Consensus 406 P~~-g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~l----------s~eEI 474 (1018)
+.. +++||+||+++|+|+.++.|+|||+|||||++++||++|+.++++++||+|||+.+.|+++ ++.++
T Consensus 83 s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i 162 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYF 162 (261)
T ss_pred chhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHH
Confidence 755 6799999999999999999999999999999999999999999999999999999999888 55555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHhccCChhHHHHHHHHHH
Q 001748 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGIVSDDELLDLLDLAL 547 (1018)
Q Consensus 475 ~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ellg~v~ee~If~Lldail 547 (1018)
...|... .+ +++ .++..++|++.+|..+++.+... ..-++...+..+.......++-.++..+.
T Consensus 163 ~~~L~~~---~~--~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~~l~ 227 (261)
T PRK05818 163 QYILLSF---YS--VDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLLI 227 (261)
T ss_pred HHHHHHc---cC--ccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5554332 22 344 57788899999999999965211 12345555555555555555555554443
No 70
>PRK07914 hypothetical protein; Reviewed
Probab=99.93 E-value=5.9e-24 Score=238.20 Aligned_cols=297 Identities=12% Similarity=0.092 Sum_probs=247.2
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCC
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPP 406 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P 406 (1018)
.+.+.|||||+.-.........|.+.+..... -..+++..+++... ...++ ..+.+.|
T Consensus 3 ~l~~iYll~G~E~~l~~~~~~~i~~~~~~~~~-----------------~~~~n~~~~d~~~~----~~~~i-~~~~t~p 60 (320)
T PRK07914 3 EPAPLHLVLGDEELLVERAVAAVLRSARQRAG-----------------TADVPVSRMRAGDV----STYEL-AELLSPS 60 (320)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHHHhcCcC-----------------CCCCceEEeccccC----CHHHH-HHhcCCC
Confidence 46789999999999998888888766532100 01233444444332 22344 4445889
Q ss_pred CCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC---cchHHHhcCc-cEEEeCCC-ChhHHHHHHHHH
Q 001748 407 FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD---KLPRSALSRS-QKYHFPKI-KDGDIASRLRRI 481 (1018)
Q Consensus 407 ~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~---kL~~tI~SRc-q~I~F~~l-s~eEI~~~L~~i 481 (1018)
++++++||+|+++..+..+..++|..+++.|++.+++|++++... ++.++|.... .++.|.++ +..++..|+++.
T Consensus 61 lF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~ 140 (320)
T PRK07914 61 LFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKE 140 (320)
T ss_pred CCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHH
Confidence 999999999999887777778899999999999888888764332 4556777765 48999999 999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHH
Q 001748 482 CVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARE 560 (1018)
Q Consensus 482 akkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~e 560 (1018)
+++.|+.++++|+++|+..+++|+..+.++|++++.+ ++.||.++|+++++...+.++|+|+++++.++...++..+++
T Consensus 141 a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~ 220 (320)
T PRK07914 141 FRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRW 220 (320)
T ss_pred HHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999875 678999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHhcccccc----------hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCC-
Q 001748 561 LMRSKIDPMQLISQLANLIMDILAGKCLED----------CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSK- 629 (1018)
Q Consensus 561 Ll~~G~dpl~LL~~L~~~LRdLL~~K~~~~----------~~~i~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~- 629 (1018)
++..|++|+.|+..|.++||.++.++.... ..++....+.+++++|+..+|.+++..|.++|..+|++.
T Consensus 221 L~~~ge~p~~il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~ 300 (320)
T PRK07914 221 AMMRGEPHVVLADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAA 300 (320)
T ss_pred HHHCCCchHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999988764311 122344556778899999999999999999999999874
Q ss_pred ChHHHHHHHHHHhccC
Q 001748 630 HQTTWLTVALLQLSSS 645 (1018)
Q Consensus 630 n~rl~LE~lLlkL~~~ 645 (1018)
+++++||.+|+++|++
T Consensus 301 ~~~~~lE~~i~~~~~~ 316 (320)
T PRK07914 301 DADYALESAVRRVAEL 316 (320)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 8999999999999874
No 71
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.93 E-value=2.5e-24 Score=229.83 Aligned_cols=322 Identities=19% Similarity=0.259 Sum_probs=243.9
Q ss_pred ccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCC--------CCCCCc
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQ--------KPCGLC 367 (1018)
Q Consensus 296 ~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~--------~PCg~C 367 (1018)
-|.+||||++|+.++++++....|+.....+.+| ++|||||+|.||.|.+.++-+++.....+.. .|-+.-
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 3899999999999999999999999988877775 5799999999999999999999865332210 111111
Q ss_pred cccceeccCCCCcccccccccccch--hHHHHHHHHhc-CCCC----CCCceEEEEeCccccCHHHHHHHHHHHhccCCc
Q 001748 368 RECALFSSGRSRDVKEVDSVRINRS--DRVGSLMKSAF-LPPF----SSRFKIFIIDECQLLHGETWATVLNSLENISQH 440 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieIdaas~~~v--d~IReLie~a~-~~P~----~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~ 440 (1018)
-....+. +....|++++..... --|.++++++. ..+. .-.+||++|-|+|.|+.++|.+|.++||.+..+
T Consensus 81 lEistvs---S~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 81 LEISTVS---SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred EEEEEec---ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 0111111 112335554433222 23667776654 3332 236899999999999999999999999999999
Q ss_pred EEEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Q 001748 441 VVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK 520 (1018)
Q Consensus 441 vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~ 520 (1018)
+.+|++++...++.++|+|||..++.+.|+++|+...|..++++||+.++.+.+..||+.++||+|.|+-+|+.+...+.
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977654
Q ss_pred ccCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHH
Q 001748 521 KITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRA----RELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARK 596 (1018)
Q Consensus 521 ~IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l----~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~ 596 (1018)
..+.+- ..+....++..+.++.+.+...+....+... -+|+..+..|..|+..|...+..
T Consensus 238 ~~~a~~-~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~--------------- 301 (351)
T KOG2035|consen 238 PFTANS-QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL--------------- 301 (351)
T ss_pred cccccC-CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh---------------
Confidence 333321 2222333455677777888887777666554 46778899999888877666432
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccC
Q 001748 597 NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 597 ~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~ 645 (1018)
+.+..--...++..+..|.+++-|...-..||.++.+++..
T Consensus 302 --------~~d~~~k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~fM~i 342 (351)
T KOG2035|consen 302 --------KCDTQLKLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKFMCI 342 (351)
T ss_pred --------cCCchhHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHH
Confidence 12222234455666788999999998899999999987653
No 72
>PRK05629 hypothetical protein; Validated
Probab=99.93 E-value=8.3e-24 Score=236.76 Aligned_cols=296 Identities=11% Similarity=0.100 Sum_probs=244.6
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCC
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPP 406 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P 406 (1018)
.+++.|||||+...-.......|.+.+.... ...+++..+++... ...++++. .+.|
T Consensus 4 ~l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~------------------~~~~n~~~~d~~e~----~~~~l~~~-~t~s 60 (318)
T PRK05629 4 VQPPVHLVLGDDEFLAERARLNIVHDIRSSM------------------ADSLQVTTLKASEV----SQGELLDA-LSPS 60 (318)
T ss_pred cCCceEEEEeCHHHHHHHHHHHHHHHHhccC------------------CCCCceEEeecccC----CHHHHHHh-hCcC
Confidence 4678999999988776666665655553211 12345556654432 24566654 4889
Q ss_pred CCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC---cchHHHhcCccEEEeCCCChhHHHHHHHHHHH
Q 001748 407 FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD---KLPRSALSRSQKYHFPKIKDGDIASRLRRICV 483 (1018)
Q Consensus 407 ~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~---kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iak 483 (1018)
+++.+++|+|+.++.+.....+.|+.+++.+++++++|+++.... ++.+++...+..++|.++...++..|+.+.++
T Consensus 61 lF~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~ 140 (318)
T PRK05629 61 LFGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFK 140 (318)
T ss_pred ccCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHH
Confidence 999999999999888766677889999999999888888876443 45667888889999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CCccCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHH
Q 001748 484 EEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELM 562 (1018)
Q Consensus 484 kegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-g~~IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl 562 (1018)
+.|+.++++|+++|+..+++|+..+.++|++++++ ++.||.++|++++....+.++|+|+++++.++...++..+++++
T Consensus 141 ~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~ 220 (318)
T PRK05629 141 NHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRAL 220 (318)
T ss_pred HcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876 67899999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHHHHhcccc---cc---------hhHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCC-
Q 001748 563 RSKIDPMQLISQLANLIMDILAGKCL---ED---------CSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSK- 629 (1018)
Q Consensus 563 ~~G~dpl~LL~~L~~~LRdLL~~K~~---~~---------~~~i~~~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~- 629 (1018)
..|++|+.|+..|.++++.+...... .. ..++....+.+++++|+.+.|.+++..|.++|..+|++.
T Consensus 221 ~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~~~ 300 (318)
T PRK05629 221 QLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQGG 300 (318)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999998876655432111 11 223344567788999999999999999999999999865
Q ss_pred ChHHHHHHHHHHhccC
Q 001748 630 HQTTWLTVALLQLSSS 645 (1018)
Q Consensus 630 n~rl~LE~lLlkL~~~ 645 (1018)
++.+.||.+|++++.+
T Consensus 301 d~~~~lE~~i~~~~~~ 316 (318)
T PRK05629 301 DPEFAIESAVRRVAEL 316 (318)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999999764
No 73
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.93 E-value=4.4e-25 Score=240.00 Aligned_cols=315 Identities=17% Similarity=0.210 Sum_probs=253.1
Q ss_pred CCCCCCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 001748 288 STYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLC 367 (1018)
Q Consensus 288 ~~~~~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C 367 (1018)
+.....+.||.+||||.+++|+++|++++.++.+....++++ ++|||||||||||+...+.|..+.|..
T Consensus 22 p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~---------- 90 (360)
T KOG0990|consen 22 PQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLP-HLLFYGPPGTGKTSTILANARDFYSPH---------- 90 (360)
T ss_pred CCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCC-cccccCCCCCCCCCchhhhhhhhcCCC----------
Confidence 344567889999999999999999999999999999888887 679999999999999999999997631
Q ss_pred cccceeccCCCCcccccccccccchhHHHHHHHHhc-CC--C-C--CCCceEEEEeCccccCHHHHHHHHHHHhccCCcE
Q 001748 368 RECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LP--P-F--SSRFKIFIIDECQLLHGETWATVLNSLENISQHV 441 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~--P-~--~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~v 441 (1018)
+....+.++++....+++-+|.-+.... +. . + ....|++|+||+|.|+.++||+|.+.+|....++
T Consensus 91 --------~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~ 162 (360)
T KOG0990|consen 91 --------PTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANT 162 (360)
T ss_pred --------CchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccce
Confidence 1222366777777667666665443322 11 1 2 2368999999999999999999999999999999
Q ss_pred EEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-
Q 001748 442 VFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK- 520 (1018)
Q Consensus 442 ifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~- 520 (1018)
.|++.++.+.++.+++++||..++|.+++..++..++..+++.+...+.++....+++.+.||+|.|++.|+..+....
T Consensus 163 rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~ 242 (360)
T KOG0990|consen 163 RFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVME 242 (360)
T ss_pred EEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred ----ccCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcccccchhHHH
Q 001748 521 ----KITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMR-SKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595 (1018)
Q Consensus 521 ----~IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~-~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~ 595 (1018)
.++.++|....|.+...++-++++.++.+....+...+.++.. .|.+...++..+..++..+
T Consensus 243 ~~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~------------- 309 (360)
T KOG0990|consen 243 RKELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIV------------- 309 (360)
T ss_pred CCCCCCchhhHHHhcCCCChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH-------------
Confidence 3666779999999998899999999999888766666655543 3444444444444433321
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhc
Q 001748 596 KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLS 643 (1018)
Q Consensus 596 ~~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~ 643 (1018)
.+......+++..+.++++.+-.+.+..+.|..++-.+.
T Consensus 310 ---------~~~~~~~~~I~~~l~~Ie~~ls~g~~~~~ql~aii~~~~ 348 (360)
T KOG0990|consen 310 ---------ISKTPVEGHILYQLADIEERLSKGCMQKEQLKAIIKNFA 348 (360)
T ss_pred ---------hcchHHHHHHHHhHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 111244667788888889999888888887777665543
No 74
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.93 E-value=5.7e-23 Score=230.20 Aligned_cols=305 Identities=20% Similarity=0.251 Sum_probs=247.3
Q ss_pred HHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHH
Q 001748 317 RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVG 396 (1018)
Q Consensus 317 ~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IR 396 (1018)
+.+...++.+ +.+.|||||+.-.-+...++.+.+.+.... ...+++..+++.. ..+.
T Consensus 6 ~~~~~~~~~~-~~~~~li~G~d~~l~~~~~~~i~~~~~~~~------------------~~~~~~~~~d~~~----~~~~ 62 (340)
T PRK05574 6 EQLEKQLKKG-LAPLYLLYGDEPLLLQEAKDAIRAAARAQG------------------FDERNVFTFDGSE----TDWD 62 (340)
T ss_pred HHHHHHHhCC-CCceEEEEcCcHHHHHHHHHHHHHHHHcCC------------------CceeeEEEeecCC----CCHH
Confidence 4566677777 889999999987667666666666543110 1112334444332 2377
Q ss_pred HHHHHhcCCCCCCCceEEEEeCccccCHH----HHHHHHHHHhccCC--cEEEEEEecCCC---cc---hHHHhcCccEE
Q 001748 397 SLMKSAFLPPFSSRFKIFIIDECQLLHGE----TWATVLNSLENISQ--HVVFVMITPELD---KL---PRSALSRSQKY 464 (1018)
Q Consensus 397 eLie~a~~~P~~g~~kVLIIDEaD~Ls~~----a~naLLk~LEepp~--~vifILaTn~~~---kL---~~tI~SRcq~I 464 (1018)
++++.+.+.|++++++||||++++.+... ....|..++ .|++ .+++|+.+...+ ++ .+++.+++..+
T Consensus 63 ~l~~~~~t~~lF~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~ 141 (340)
T PRK05574 63 DVLEACQSLPLFSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVV 141 (340)
T ss_pred HHHHHhhccCccccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEE
Confidence 88888899999999999999999998765 334455555 4444 456666655443 33 67888899999
Q ss_pred EeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC--CccCHHHHHHHhccCChhHHHHH
Q 001748 465 HFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG--KKITLSLAYELIGIVSDDELLDL 542 (1018)
Q Consensus 465 ~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g--~~IT~edV~ellg~v~ee~If~L 542 (1018)
.|.+++..++..|+...+++.|+.++++++++|+..++||+..+.++|++++++. +.||.++|+++++...+.++|++
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l 221 (340)
T PRK05574 142 EAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDL 221 (340)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998763 45999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc-------------hhHHHHHHHHhhhhcCCHH
Q 001748 543 LDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED-------------CSEARKNFFGKHTSEADMQ 609 (1018)
Q Consensus 543 ldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~-------------~~~i~~~~l~r~a~~~s~~ 609 (1018)
+++++.++...++..+++++..|.+|+.++..|.+++++++.++.... ..+.....+.+++++|+.+
T Consensus 222 ~dai~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~ 301 (340)
T PRK05574 222 VDAILAGKIKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLK 301 (340)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999987764321 1122345566778999999
Q ss_pred HHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHhccC
Q 001748 610 KLSRALKILSETEKQLRMSK--HQTTWLTVALLQLSSS 645 (1018)
Q Consensus 610 ~L~~aL~iLseae~qLK~s~--n~rl~LE~lLlkL~~~ 645 (1018)
.|.+++..|.++|.++|++. ++.+.||.++++||.+
T Consensus 302 ~L~~~l~~L~~~d~~iK~~~~~~~~~~le~~ii~l~~~ 339 (340)
T PRK05574 302 QLKQAIQLLAETDYQIKTGYGGDKWLELELLLLKLAGA 339 (340)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Confidence 99999999999999999985 8999999999999975
No 75
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.93 E-value=7.2e-23 Score=230.92 Aligned_cols=303 Identities=17% Similarity=0.126 Sum_probs=245.6
Q ss_pred HHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHH
Q 001748 319 LLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGS 397 (1018)
Q Consensus 319 L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IRe 397 (1018)
+...+.. ....+.|||||+........++.+.+.+.... ...+++..+++.... .++.+
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~------------------~~~fn~~~~~~~e~~--~~~~~ 68 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDL------------------DDPFAVVRLDGDDLD--ADPAR 68 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCC------------------CCCcceeeccHHHhh--cCHHH
Confidence 3344444 34668999999999999999998888764211 112334444332210 12678
Q ss_pred HHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC---cchHHHh--cCccEEEeCCCChh
Q 001748 398 LMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD---KLPRSAL--SRSQKYHFPKIKDG 472 (1018)
Q Consensus 398 Lie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~---kL~~tI~--SRcq~I~F~~ls~e 472 (1018)
+++.+...|+++.+++|+|.+++ ....+.|..+++.|++++++|+.....+ ++.+.+. ..+..+.|.+++..
T Consensus 69 ~~~~~~t~slF~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~ 145 (343)
T PRK06585 69 LEDEANAISLFGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDER 145 (343)
T ss_pred HHHHHhCCCCCCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHH
Confidence 88999999999999999999654 3456678999999888888888765543 3334332 23457899999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC---CccCHHHHHHHhccCChhHHHHHHHHHHcC
Q 001748 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG---KKITLSLAYELIGIVSDDELLDLLDLALSS 549 (1018)
Q Consensus 473 EI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g---~~IT~edV~ellg~v~ee~If~Lldail~~ 549 (1018)
++..|+.+++++.|+.++++|+++|+..++||++.+.++|++++++. +.||.++|.++++...+.++|+|+++++.+
T Consensus 146 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~ 225 (343)
T PRK06585 146 DLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAG 225 (343)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999872 579999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc----hhHH-----------HHHHHHhhhhcCCHHHHHHH
Q 001748 550 DTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED----CSEA-----------RKNFFGKHTSEADMQKLSRA 614 (1018)
Q Consensus 550 d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~----~~~i-----------~~~~l~r~a~~~s~~~L~~a 614 (1018)
+...++..++.++..|++|..|+..|.+++|.++.++.... .... .++.+.+++++|+.+.|.++
T Consensus 226 ~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~ 305 (343)
T PRK06585 226 DLAAFERALDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRA 305 (343)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999987765411 1111 12345677899999999999
Q ss_pred HHHHHHHHHHHhcCC-ChHHHHHHHHHHhcc
Q 001748 615 LKILSETEKQLRMSK-HQTTWLTVALLQLSS 644 (1018)
Q Consensus 615 L~iLseae~qLK~s~-n~rl~LE~lLlkL~~ 644 (1018)
+..|.++|.++|++. ++++.||.+++++|.
T Consensus 306 l~~l~~~d~~lK~~~~~~~~~le~~i~~~~~ 336 (343)
T PRK06585 306 LERLQAAELDCRRNPALADAIARRVLLSIAV 336 (343)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 999999999999876 788999999999985
No 76
>PRK05907 hypothetical protein; Provisional
Probab=99.92 E-value=2.2e-23 Score=232.69 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=233.1
Q ss_pred HHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHH
Q 001748 316 VRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRV 395 (1018)
Q Consensus 316 v~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~I 395 (1018)
+..+.+.+++|+ ++||+||..- ....+.|.+.+..+ +...+++.. ..+
T Consensus 7 ~~~~~~~~~~~~--~~y~~~g~~~---~~~~~~l~~~~~~~-----------------------~~~~fdg~~----~~~ 54 (311)
T PRK05907 7 FKDFSQYYEEKR--PAVIVIGSSS---EEDKDIFIELLVSG-----------------------RKSEFDGQG----LLQ 54 (311)
T ss_pred HHHHHHHHhcCC--ceEEEecCCc---HHHHHHHHHHhCCC-----------------------ccceecCCC----CCH
Confidence 456677788888 8999999988 44555554444211 001122211 247
Q ss_pred HHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEE-EEecCCC---cchHHHhcCccEE----EeC
Q 001748 396 GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFV-MITPELD---KLPRSALSRSQKY----HFP 467 (1018)
Q Consensus 396 ReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifI-LaTn~~~---kL~~tI~SRcq~I----~F~ 467 (1018)
.++++.+.+.|+++.+++|+|.+.+.+.....+.|.+++++|++++++| ++. ..+ ++.+.|. ....+ .|.
T Consensus 55 ~~ii~~aetlPfFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~-k~~~v~~~~e~~ 132 (311)
T PRK05907 55 QELLSWTEHFGLFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLS-SALCLSLFGEWF 132 (311)
T ss_pred HHHHHHHhcCCcccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHh-hcceeccccccC
Confidence 7889999999999999999999888887777889999999999975555 544 222 2334454 35555 899
Q ss_pred CCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhh---CCccCHHHHHHHhccCChhHHHHHH
Q 001748 468 KIKDGDIASRLRRICVEEAINFDQAALDFIAAKS-NGSIRDAEMLLDQLSLL---GKKITLSLAYELIGIVSDDELLDLL 543 (1018)
Q Consensus 468 ~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s-~GnLR~Al~lLeqLsl~---g~~IT~edV~ellg~v~ee~If~Ll 543 (1018)
++.+.++..|+.+.++++|+.++++|+++++..+ ++|+..+.++|++++++ ++.||.++|++++....++++|+|+
T Consensus 133 ~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~ 212 (311)
T PRK05907 133 ADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLR 212 (311)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999999999999999999999 69999999999999887 4579999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHHHHHHHHHHHH
Q 001748 544 DLALSSDTSNTVIRARELMRS-KIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKILSETE 622 (1018)
Q Consensus 544 dail~~d~~~al~~l~eLl~~-G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~~aL~iLseae 622 (1018)
++++.++...|+..+++|+.. |++|+.|++.|+++| ++..|.....+.... ....-.++.++|.+++..+.++|
T Consensus 213 dai~~~~~~~Al~il~~Ll~~~ge~p~~ILall~rQf--l~~~k~l~~~g~~~~---~p~~vafs~~~L~~~~~~l~~~D 287 (311)
T PRK05907 213 DALLRRDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQC--LYGLRSIEEQSKERK---HRIFVAYGKERLLQALNLLFYAE 287 (311)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--HHHHHHHHHhcCCCC---CCeEEEECHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999 766665322110000 00001189999999999999999
Q ss_pred HHHhcCC-ChHHHHHHHHHHhccC
Q 001748 623 KQLRMSK-HQTTWLTVALLQLSSS 645 (1018)
Q Consensus 623 ~qLK~s~-n~rl~LE~lLlkL~~~ 645 (1018)
.++|++. ++.+.||.+++++|.+
T Consensus 288 ~~iKtg~~d~~~~lElli~~~~~~ 311 (311)
T PRK05907 288 SLIKNNVQDPILAVETLVIRMTNL 311 (311)
T ss_pred HHHhcCCCChHHHHHHHHHHHhcC
Confidence 9999986 8999999999999863
No 77
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.92 E-value=2.1e-22 Score=226.51 Aligned_cols=300 Identities=13% Similarity=0.143 Sum_probs=245.3
Q ss_pred HHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHH
Q 001748 317 RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVG 396 (1018)
Q Consensus 317 ~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IR 396 (1018)
..|...|+.+.+++.|||||..-.-....+..|.+.+.... ...+ ...+. .++.
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~-------------------~~~~-~~~~~------~~~~ 57 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPEN-------------------ELKT-LYFDE------YDFE 57 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCch-------------------Hhhh-hchhh------ccHH
Confidence 46788899999999999999999998888888877653210 0001 11111 2367
Q ss_pred HHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc---chHHHhcC--ccEEEeCCCCh
Q 001748 397 SLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK---LPRSALSR--SQKYHFPKIKD 471 (1018)
Q Consensus 397 eLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k---L~~tI~SR--cq~I~F~~ls~ 471 (1018)
++++.+...|+++++++|+|.+...+.......|+.+++.+++.+++|++....++ +.+.+... +..+.|.+++.
T Consensus 58 ~i~~~~~t~plF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~ 137 (328)
T PRK08487 58 QAKDFLSQSSLFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNA 137 (328)
T ss_pred HHHHHHhcccccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCH
Confidence 88899999999999999999998777777778999999999888877775544432 22222222 55799999999
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCccCHHHHHHHhccCChhHHHHHHHHHHcCCh
Q 001748 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLALSSDT 551 (1018)
Q Consensus 472 eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~IT~edV~ellg~v~ee~If~Lldail~~d~ 551 (1018)
.++..|++..+++.|+.++++|+++|+..+++|+..+.++|+++.++.+.||.++|.+++....+.++|+++++++.++
T Consensus 138 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~- 216 (328)
T PRK08487 138 REALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKK- 216 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCC-
Confidence 9999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccc----c--------ch--hHHHHHHHHhhhhcCCHHHHHHHHHH
Q 001748 552 SNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL----E--------DC--SEARKNFFGKHTSEADMQKLSRALKI 617 (1018)
Q Consensus 552 ~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~----~--------~~--~~i~~~~l~r~a~~~s~~~L~~aL~i 617 (1018)
.++..+++++..|++|+.|++.|.++|+.++..+.. . +. +.+....+.+++++|+..+|.+++..
T Consensus 217 -~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~ 295 (328)
T PRK08487 217 -DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFEL 295 (328)
T ss_pred -cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 478889999999999999999999999998754321 1 01 12223345677899999999999999
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHhcc
Q 001748 618 LSETEKQLRMSK--HQTTWLTVALLQLSS 644 (1018)
Q Consensus 618 Lseae~qLK~s~--n~rl~LE~lLlkL~~ 644 (1018)
|.++|.++|++. +..+.+|+.++++..
T Consensus 296 L~e~D~~lK~g~~~~~~~~~~~~~~~~~~ 324 (328)
T PRK08487 296 LLEWELELKTGQKIDKNLFLLSTLIKIQK 324 (328)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 999999999985 577888988887654
No 78
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.91 E-value=2.5e-22 Score=221.27 Aligned_cols=250 Identities=20% Similarity=0.231 Sum_probs=220.3
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeCccccCH-HHHHHHHHHHhccCCcEEEEEEecCCCc---chHHHh--cCccEEEeC
Q 001748 394 RVGSLMKSAFLPPFSSRFKIFIIDECQLLHG-ETWATVLNSLENISQHVVFVMITPELDK---LPRSAL--SRSQKYHFP 467 (1018)
Q Consensus 394 ~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~-~a~naLLk~LEepp~~vifILaTn~~~k---L~~tI~--SRcq~I~F~ 467 (1018)
.+.++++.+...|+++.++|++|++++.+.. ...++|+++++++++++++|+.++..++ +.+.+. +++.++.|.
T Consensus 30 ~~~~l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~ 109 (302)
T TIGR01128 30 DWNQLLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECK 109 (302)
T ss_pred CHHHHHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEec
Confidence 3555888888999999999999999999863 5689999999999999999998876542 222333 499999999
Q ss_pred CCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh--CCccCHHHHHHHhccCChhHHHHHHHH
Q 001748 468 KIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGIVSDDELLDLLDL 545 (1018)
Q Consensus 468 ~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~--g~~IT~edV~ellg~v~ee~If~Llda 545 (1018)
+++..++..|+...++++|+.++++++++|+..++||++.+.++|++++++ ++.||.++|+++++...+.++|+++++
T Consensus 110 ~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~da 189 (302)
T TIGR01128 110 TPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDA 189 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 568999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc-------------hhHHHHHHHHhhhhcCCHHHHH
Q 001748 546 ALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED-------------CSEARKNFFGKHTSEADMQKLS 612 (1018)
Q Consensus 546 il~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~-------------~~~i~~~~l~r~a~~~s~~~L~ 612 (1018)
++.++...++..++.++..|.+|..++..|.+++++++.++.... ........+.+++++|+.++|.
T Consensus 190 l~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~ 269 (302)
T TIGR01128 190 LLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLE 269 (302)
T ss_pred HHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999999999987753311 1223345667788999999999
Q ss_pred HHHHHHHHHHHHHhc--CCChHHHHHHHHHHhc
Q 001748 613 RALKILSETEKQLRM--SKHQTTWLTVALLQLS 643 (1018)
Q Consensus 613 ~aL~iLseae~qLK~--s~n~rl~LE~lLlkL~ 643 (1018)
+++..|.++|.++|+ +.++.+.||.+++++|
T Consensus 270 ~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 270 QALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 999999999999994 4599999999999987
No 79
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.90 E-value=2.1e-23 Score=220.37 Aligned_cols=195 Identities=25% Similarity=0.328 Sum_probs=142.6
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHH----cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAIS----RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCR 368 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk----~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~ 368 (1018)
...++.++.||++|+|+|||++++..++-.++ .+....++|||||||+||||+|+++|+++++.
T Consensus 10 ~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~------------ 77 (233)
T PF05496_consen 10 EEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN------------ 77 (233)
T ss_dssp --S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--------------
T ss_pred cchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC------------
Confidence 45678999999999999999999988776554 34455778999999999999999999999742
Q ss_pred ccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC----------
Q 001748 369 ECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS---------- 438 (1018)
Q Consensus 369 sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp---------- 438 (1018)
+..+.+.......++..++..+ ....|+||||+|+|++..++.|+..||+..
T Consensus 78 ------------~~~~sg~~i~k~~dl~~il~~l------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ 139 (233)
T PF05496_consen 78 ------------FKITSGPAIEKAGDLAAILTNL------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPN 139 (233)
T ss_dssp ------------EEEEECCC--SCHHHHHHHHT--------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS
T ss_pred ------------eEeccchhhhhHHHHHHHHHhc------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccc
Confidence 1122222222334555555543 346699999999999999999999999641
Q ss_pred --------CcEEEEEEecCCCcchHHHhcCccE-EEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHH
Q 001748 439 --------QHVVFVMITPELDKLPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAE 509 (1018)
Q Consensus 439 --------~~vifILaTn~~~kL~~tI~SRcq~-I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al 509 (1018)
+...+|.+|+....+..++++||.. ..+..++.+|+.+++.+.+...++.++++++..||+.+.|.+|.|.
T Consensus 140 ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 140 ARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp -BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHH
T ss_pred cceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHH
Confidence 2346889999999999999999996 4799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 001748 510 MLLDQLSL 517 (1018)
Q Consensus 510 ~lLeqLsl 517 (1018)
++|..+--
T Consensus 220 rll~rvrD 227 (233)
T PF05496_consen 220 RLLRRVRD 227 (233)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 99998743
No 80
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.87 E-value=1e-20 Score=212.74 Aligned_cols=209 Identities=20% Similarity=0.266 Sum_probs=168.1
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHHc----CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISR----GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~----grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
..|..+|||.+|++++||+++++.|..++.. +..++++||+||+|+|||++|+++|++++...
T Consensus 13 ~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~------------- 79 (328)
T PRK00080 13 DEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI------------- 79 (328)
T ss_pred chhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe-------------
Confidence 4567899999999999999999999877753 55667899999999999999999999986320
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC------------
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS------------ 438 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp------------ 438 (1018)
.+..+.. ......+..++..+ +...|+||||+|.++....+.|+..+++..
T Consensus 80 -~~~~~~~----------~~~~~~l~~~l~~l------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~ 142 (328)
T PRK00080 80 -RITSGPA----------LEKPGDLAAILTNL------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR 142 (328)
T ss_pred -EEEeccc----------ccChHHHHHHHHhc------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc
Confidence 1111111 11123344444433 345799999999999888888888887542
Q ss_pred ------CcEEEEEEecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHH
Q 001748 439 ------QHVVFVMITPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511 (1018)
Q Consensus 439 ------~~vifILaTn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~l 511 (1018)
+...+|++|+....+.++|++||. .+.|.+++.+++.++|+..+...++.++++++.+|++.++|++|.+...
T Consensus 143 ~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~ 222 (328)
T PRK00080 143 SIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRL 222 (328)
T ss_pred ceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHH
Confidence 236788899988899999999985 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-----CCccCHHHHHHHhcc
Q 001748 512 LDQLSLL-----GKKITLSLAYELIGI 533 (1018)
Q Consensus 512 LeqLsl~-----g~~IT~edV~ellg~ 533 (1018)
|+++... .+.|+.++|.+.+..
T Consensus 223 l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 223 LRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9986422 367999999888754
No 81
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=7.2e-19 Score=198.52 Aligned_cols=306 Identities=17% Similarity=0.234 Sum_probs=243.3
Q ss_pred HHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHH
Q 001748 317 RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVG 396 (1018)
Q Consensus 317 ~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IR 396 (1018)
..+...+..+...+.||+||+.-.-....+..+.+...+. .+++..+.... ....+.
T Consensus 4 ~~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~---------------------~~~~~~~~~~~--~~~~~~ 60 (334)
T COG1466 4 EELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALAD---------------------GFDENYSFFDD--SELDWA 60 (334)
T ss_pred HHHHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhcc---------------------chhhHHhhccc--ccCCHH
Confidence 3456667777788999999998877777888777766521 11222211111 113466
Q ss_pred HHHHHhcCCCCCCCceEEEEeCccccC-HHHHHHHHHHHhccC-CcEEEEEEecCCC---cchHHHhcC--ccEEEeCCC
Q 001748 397 SLMKSAFLPPFSSRFKIFIIDECQLLH-GETWATVLNSLENIS-QHVVFVMITPELD---KLPRSALSR--SQKYHFPKI 469 (1018)
Q Consensus 397 eLie~a~~~P~~g~~kVLIIDEaD~Ls-~~a~naLLk~LEepp-~~vifILaTn~~~---kL~~tI~SR--cq~I~F~~l 469 (1018)
.+++.+...|+++..++++|....... .+....+......+| ..+++++..+..+ ++.+.+..- +.++.+.++
T Consensus 61 ~~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~ 140 (334)
T COG1466 61 DLLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPL 140 (334)
T ss_pred HHHHHhhccccccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCC
Confidence 788888889999999999999998765 455556667777777 6777777665554 222333322 668999999
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhC--CccCHHHHHHHhccCChhHHHHHHHHHH
Q 001748 470 KDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG--KKITLSLAYELIGIVSDDELLDLLDLAL 547 (1018)
Q Consensus 470 s~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g--~~IT~edV~ellg~v~ee~If~Lldail 547 (1018)
+..++.+|+...+++.|+.++++|+++|+...+||++.+.+++++++++. +.||.++|+++++...+.++|+++++++
T Consensus 141 ~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail 220 (334)
T COG1466 141 DEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALL 220 (334)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999873 4799999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhH-------------HHHHHHHhhhhcCCHHHHHHH
Q 001748 548 SSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE-------------ARKNFFGKHTSEADMQKLSRA 614 (1018)
Q Consensus 548 ~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~-------------i~~~~l~r~a~~~s~~~L~~a 614 (1018)
.+|...++..+++++.+|++|..|++.|.++|+.++..+.....+. ..+..+.+...+++...|.++
T Consensus 221 ~g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~ 300 (334)
T COG1466 221 KGDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKA 300 (334)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHH
Confidence 9999999999999999999999999999999997766554422211 112334455677999999999
Q ss_pred HHHHHHHHHHHhcCC-ChHHHHHHHHHHhccC
Q 001748 615 LKILSETEKQLRMSK-HQTTWLTVALLQLSSS 645 (1018)
Q Consensus 615 L~iLseae~qLK~s~-n~rl~LE~lLlkL~~~ 645 (1018)
++.|.++|..+|++. ++...++.+|++++..
T Consensus 301 l~~l~~~d~~~K~~~~d~~~~l~~~l~~~~~~ 332 (334)
T COG1466 301 LRLLAQLDYQIKTGYGDPVWALELFLLRLLEL 332 (334)
T ss_pred HHHHHHHHHHHhcCCccchHHHHHHHHHHhhc
Confidence 999999999999998 7889999999988754
No 82
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.84 E-value=2.5e-20 Score=221.92 Aligned_cols=227 Identities=23% Similarity=0.286 Sum_probs=165.3
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
....||.+||||.+|++++||++.++.|+.++.... +.++||+||+|||||++|+++++...........+
T Consensus 50 ~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~-~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~-------- 120 (531)
T TIGR02902 50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPN-PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKE-------- 120 (531)
T ss_pred hhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCC-CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCC--------
Confidence 456799999999999999999999999998876544 45689999999999999999987654211100000
Q ss_pred eeccCCCCccccccccccc-chhHH-HHHHHH--------------hc-CCC-----CCCCceEEEEeCccccCHHHHHH
Q 001748 372 LFSSGRSRDVKEVDSVRIN-RSDRV-GSLMKS--------------AF-LPP-----FSSRFKIFIIDECQLLHGETWAT 429 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~-~vd~I-ReLie~--------------a~-~~P-----~~g~~kVLIIDEaD~Ls~~a~na 429 (1018)
...+++++..... ....+ ..++.. .. ..+ ......+|||||++.|+...++.
T Consensus 121 ------~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~ 194 (531)
T TIGR02902 121 ------GAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNK 194 (531)
T ss_pred ------CCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHH
Confidence 0011222211000 00000 000000 00 000 12346799999999999999999
Q ss_pred HHHHHhcc----------------------------CCcEEEEEEec-CCCcchHHHhcCccEEEeCCCChhHHHHHHHH
Q 001748 430 VLNSLENI----------------------------SQHVVFVMITP-ELDKLPRSALSRSQKYHFPKIKDGDIASRLRR 480 (1018)
Q Consensus 430 LLk~LEep----------------------------p~~vifILaTn-~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~ 480 (1018)
|+++||+. +.++.+|++|+ .++.+++++++||..+.|++++.+++..+++.
T Consensus 195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~ 274 (531)
T TIGR02902 195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKN 274 (531)
T ss_pred HHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHH
Confidence 99999862 23456776655 56789999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh----C-CccCHHHHHHHhccC
Q 001748 481 ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL----G-KKITLSLAYELIGIV 534 (1018)
Q Consensus 481 iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~----g-~~IT~edV~ellg~v 534 (1018)
.+++.++.+++++++.|+.++. |.|++.++++.++.. + ..||.++|+++++..
T Consensus 275 ~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 275 AAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 9999999999999999988775 899999999987543 1 369999999998643
No 83
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.4e-19 Score=194.90 Aligned_cols=206 Identities=22% Similarity=0.290 Sum_probs=166.1
Q ss_pred cccccCCCCcccccCcHHHHHHHHHHHH----cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 297 LSQKFRPNFFDELVGQNVVVRSLLSAIS----RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 297 L~eKyRP~tFddLVGqe~iv~~L~~aIk----~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
+....||++|+|+|||++++++|.-.|+ ++....++|||||||.||||+|+++|++++.. ..
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--------------~k 81 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--------------LK 81 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--------------eE
Confidence 4567899999999999999999887765 35556789999999999999999999999732 22
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC--------------
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-------------- 438 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-------------- 438 (1018)
+.+|... ....++-.++..+ ..+.|+||||+|+|++.+.+.|...||++.
T Consensus 82 ~tsGp~l----------eK~gDlaaiLt~L------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv 145 (332)
T COG2255 82 ITSGPAL----------EKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSI 145 (332)
T ss_pred ecccccc----------cChhhHHHHHhcC------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceE
Confidence 3333221 2223454555443 346799999999999999999999999641
Q ss_pred ----CcEEEEEEecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 001748 439 ----QHVVFVMITPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLD 513 (1018)
Q Consensus 439 ----~~vifILaTn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLe 513 (1018)
+...+|.+|+....+...++.||. ..++.-++.+|+..++.+-+...+++++++++..||+++.|.+|.|..+|.
T Consensus 146 ~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 146 RLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHH
Confidence 244689999999999999999998 677888999999999999999999999999999999999999999999999
Q ss_pred HHHhh-----CCccCHHHHHHHhc
Q 001748 514 QLSLL-----GKKITLSLAYELIG 532 (1018)
Q Consensus 514 qLsl~-----g~~IT~edV~ellg 532 (1018)
+.--+ ...|+.+.+.+.+.
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~ 249 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALK 249 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHH
Confidence 87432 35677766665554
No 84
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.83 E-value=2.1e-19 Score=199.07 Aligned_cols=200 Identities=20% Similarity=0.235 Sum_probs=157.0
Q ss_pred CCcccccCcHHHHHHHHHHHHc----CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCC
Q 001748 304 NFFDELVGQNVVVRSLLSAISR----GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSR 379 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~----grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~ 379 (1018)
++|++||||+++++.|..++.. +..+.+++|+||+|+|||++|+++|+.++..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~----------------------- 57 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN----------------------- 57 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC-----------------------
Confidence 4799999999999999988863 3344568999999999999999999988632
Q ss_pred cccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC------------------CcE
Q 001748 380 DVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS------------------QHV 441 (1018)
Q Consensus 380 DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp------------------~~v 441 (1018)
+..+..........+...+..+ +...|+||||+|.+....++.|+..+++.. +..
T Consensus 58 -~~~~~~~~~~~~~~l~~~l~~~------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 130 (305)
T TIGR00635 58 -LKITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPF 130 (305)
T ss_pred -EEEeccchhcCchhHHHHHHhc------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCe
Confidence 0111111111122333343332 234699999999999998888888876422 347
Q ss_pred EEEEEecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh--
Q 001748 442 VFVMITPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-- 518 (1018)
Q Consensus 442 ifILaTn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-- 518 (1018)
.+|++|+.+..+.+++++||. .+.|.+++.+++.++|+..+...++.++++++.+|++.++|++|.+.++++.+...
T Consensus 131 ~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~ 210 (305)
T TIGR00635 131 TLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQ 210 (305)
T ss_pred EEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 788899998899999999996 68999999999999999999999999999999999999999999999999986422
Q ss_pred ---CCccCHHHHHHHhcc
Q 001748 519 ---GKKITLSLAYELIGI 533 (1018)
Q Consensus 519 ---g~~IT~edV~ellg~ 533 (1018)
...||.+.|++.+..
T Consensus 211 ~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 211 VRGQKIINRDIALKALEM 228 (305)
T ss_pred HcCCCCcCHHHHHHHHHH
Confidence 356899988887653
No 85
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.81 E-value=8.9e-19 Score=186.49 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=153.5
Q ss_pred HHHHHHHHHcCCCCcEEEEECCCc-hHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc-------
Q 001748 316 VRSLLSAISRGMVTSFYLFHGPRG-TGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV------- 387 (1018)
Q Consensus 316 v~~L~~aIk~grl~~ayLf~GPpG-TGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa------- 387 (1018)
+..|.+.++.++++|+|||.|..+ ++|..++..+++.+.|. .+..|.|+|+..+...
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~---------------~i~~~~HPD~~~I~pe~~~~~~~ 66 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKN---------------SIPLENNPDYHFIARETSATSNA 66 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhcc---------------CcccCCCCCEEEEeccccccccC
Confidence 468899999999999999999998 99999999999999764 2455889998888644
Q ss_pred cccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeC
Q 001748 388 RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFP 467 (1018)
Q Consensus 388 s~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~ 467 (1018)
...++++||++.+.+...|..+++||+||+++|.|+.++.|+|||+|||||++++||++|+.+..+++||+|||+.+.|.
T Consensus 67 ~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~ 146 (263)
T PRK06581 67 KNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVR 146 (263)
T ss_pred CcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 468 KIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL 515 (1018)
Q Consensus 468 ~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqL 515 (1018)
.+......++....+.-. .+..-+++|.+....+......-.+.+
T Consensus 147 ~p~~~~~~e~~~~~~~p~---~~~~~l~~i~~~~~~d~~~w~~~~~~~ 191 (263)
T PRK06581 147 SSILHAYNELYSQFIQPI---ADNKTLDFINRFTTKDRELWLDFIDNL 191 (263)
T ss_pred CCCHHHHHHHHHHhcccc---cccHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999888877765544221 233447777777665655555555544
No 86
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.76 E-value=1.2e-17 Score=177.64 Aligned_cols=203 Identities=23% Similarity=0.257 Sum_probs=152.4
Q ss_pred ccCCCCcccccCcHHHHHH---HHHHHHcC-----CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 300 KFRPNFFDELVGQNVVVRS---LLSAISRG-----MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 300 KyRP~tFddLVGqe~iv~~---L~~aIk~g-----rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
-.+-.+|+|+|||++.++. +.+.+++. ..|..+|||||||||||++|+++|.+...+
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--------------- 178 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--------------- 178 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc---------------
Confidence 3444689999999998854 44555542 346789999999999999999999887521
Q ss_pred eeccCCCCccccccccc------ccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCH------------HHHHHHHH
Q 001748 372 LFSSGRSRDVKEVDSVR------INRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHG------------ETWATVLN 432 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas------~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~------------~a~naLLk 432 (1018)
++.+.+.. ..+..+|+++++.+. .+| -|+||||+|.+.- +..|+||.
T Consensus 179 ---------~l~vkat~liGehVGdgar~Ihely~rA~~~aP-----civFiDE~DAiaLdRryQelRGDVsEiVNALLT 244 (368)
T COG1223 179 ---------LLLVKATELIGEHVGDGARRIHELYERARKAAP-----CIVFIDELDAIALDRRYQELRGDVSEIVNALLT 244 (368)
T ss_pred ---------eEEechHHHHHHHhhhHHHHHHHHHHHHHhcCC-----eEEEehhhhhhhhhhhHHHhcccHHHHHHHHHH
Confidence 22222221 234568999998886 444 5999999998753 36899999
Q ss_pred HHhccC--CcEEEEEEecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHH
Q 001748 433 SLENIS--QHVVFVMITPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDA 508 (1018)
Q Consensus 433 ~LEepp--~~vifILaTn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~A 508 (1018)
-|+... ..+++|.+||.++-|+++|+||+. .|+|.-|..+|...+|+..+++.-+.++.. +++++..+.| +-|++
T Consensus 245 elDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdi 323 (368)
T COG1223 245 ELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDI 323 (368)
T ss_pred hccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhH
Confidence 998764 478999999999999999999998 799999999999999999999988887766 7889998887 66666
Q ss_pred HHHHHHH-----Hhh-CCccCHHHHHHHhc
Q 001748 509 EMLLDQL-----SLL-GKKITLSLAYELIG 532 (1018)
Q Consensus 509 l~lLeqL-----sl~-g~~IT~edV~ellg 532 (1018)
..-+-+- ... ...|+.++++.++.
T Consensus 324 kekvlK~aLh~Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 324 KEKVLKTALHRAIAEDREKVEREDIEKALK 353 (368)
T ss_pred HHHHHHHHHHHHHHhchhhhhHHHHHHHHH
Confidence 4433332 222 24566666655543
No 87
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.75 E-value=4.1e-17 Score=192.08 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=181.0
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHc--------------------------------CCC-CcEEEEECCCch
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISR--------------------------------GMV-TSFYLFHGPRGT 340 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~--------------------------------grl-~~ayLf~GPpGT 340 (1018)
..-|++||+|+.|-||+|.+.+-+.+..||+. +++ ...+||+||||.
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 34799999999999999988888877777752 111 146999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhc-CCC---CCCCceEEEE
Q 001748 341 GKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPP---FSSRFKIFII 416 (1018)
Q Consensus 341 GKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P---~~g~~kVLII 416 (1018)
||||+|+++|+..++ .++||+++.......+++.++.+. +.. ..+++..+||
T Consensus 338 GKTTLAHViAkqaGY------------------------sVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGY------------------------SVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred ChhHHHHHHHHhcCc------------------------eEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEE
Confidence 999999999998863 488999988888888887776654 333 3378899999
Q ss_pred eCccccCHHHHHHHHHHHhc--c-----CC--------------cEEEEEEecCCC-cchHHHhcCccEEEeCCCChhHH
Q 001748 417 DECQLLHGETWATVLNSLEN--I-----SQ--------------HVVFVMITPELD-KLPRSALSRSQKYHFPKIKDGDI 474 (1018)
Q Consensus 417 DEaD~Ls~~a~naLLk~LEe--p-----p~--------------~vifILaTn~~~-kL~~tI~SRcq~I~F~~ls~eEI 474 (1018)
||||.-...+.+.|+..++. + +. .--+|.+||+.. --+..|+--++++.|.+++..-+
T Consensus 394 DEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969|consen 394 DEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred ecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHH
Confidence 99999999999999998871 1 11 114788888764 12345556688999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCc----cCHHHHHHHhcc--CChhHHHHHHHHHHc
Q 001748 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK----ITLSLAYELIGI--VSDDELLDLLDLALS 548 (1018)
Q Consensus 475 ~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~g~~----IT~edV~ellg~--v~ee~If~Lldail~ 548 (1018)
+++|+.||.+||+.++..+|..|++++++|+|..+|.|+-++..+++ |.+.++.+.... .....+|.++..+++
T Consensus 474 v~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~w~ei~q 553 (877)
T KOG1969|consen 474 VERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKEIFQ 553 (877)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887665 666666554322 223456666654443
No 88
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.74 E-value=8.1e-17 Score=171.53 Aligned_cols=199 Identities=18% Similarity=0.318 Sum_probs=149.9
Q ss_pred CCCCccccc--CcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCC
Q 001748 302 RPNFFDELV--GQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSR 379 (1018)
Q Consensus 302 RP~tFddLV--Gqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~ 379 (1018)
+|.+|++++ +.+.++..+.+++........++|+||+|+|||++|+++++++... + .
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------------------~--~ 71 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------------------G--R 71 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------------------C--C
Confidence 345899988 3567778888877754555789999999999999999999987421 1 1
Q ss_pred cccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCC--cEEEEEEecCCC---cch
Q 001748 380 DVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQ--HVVFVMITPELD---KLP 454 (1018)
Q Consensus 380 DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~--~vifILaTn~~~---kL~ 454 (1018)
.+..++.... ...+ .......++||||+|.+....+..|+.+++.... ..++|++++... .+.
T Consensus 72 ~~~~i~~~~~------~~~~------~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 72 NARYLDAASP------LLAF------DFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred cEEEEehHHh------HHHH------hhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC
Confidence 1223332211 0111 1123457999999999998888888888875432 334556555433 356
Q ss_pred HHHhcCc---cEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh----hCCccCHHHH
Q 001748 455 RSALSRS---QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL----LGKKITLSLA 527 (1018)
Q Consensus 455 ~tI~SRc---q~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl----~g~~IT~edV 527 (1018)
+.+.||+ ..+.+++++.++....|...+.+.++.++++++++|++...||+|.+.+.|+.+.. .++.||...|
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~ 219 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLL 219 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 7888886 58999999999999999999999999999999999999999999999999999853 3678999999
Q ss_pred HHHhcc
Q 001748 528 YELIGI 533 (1018)
Q Consensus 528 ~ellg~ 533 (1018)
+++++.
T Consensus 220 ~~~l~~ 225 (227)
T PRK08903 220 REMLAQ 225 (227)
T ss_pred HHHHhc
Confidence 999864
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.73 E-value=1.2e-16 Score=172.15 Aligned_cols=198 Identities=17% Similarity=0.228 Sum_probs=142.9
Q ss_pred Cccccc-C-cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 305 FFDELV-G-QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 305 tFddLV-G-qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
+|++++ | +..++..+.++..... .+.++|+||+|+|||++++++++++... |....+.
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~-~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------------------~~~v~y~ 79 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEH-SGYIYLWSREGAGRSHLLHAACAELSQR-------------------GRAVGYV 79 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCC-CCeEEEECCCCCCHHHHHHHHHHHHHhC-------------------CCeEEEE
Confidence 788988 4 5667777777765443 4578999999999999999999987521 1111111
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--HHHHHHHHHHhcc--CCcEEEEEEecCCC----cch
Q 001748 383 EVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--ETWATVLNSLENI--SQHVVFVMITPELD----KLP 454 (1018)
Q Consensus 383 eIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--~a~naLLk~LEep--p~~vifILaTn~~~----kL~ 454 (1018)
.++... ....++++.+. ...++||||+|.+.. ..+.+|+..+... .+...+|++++.+. .+.
T Consensus 80 ~~~~~~----~~~~~~~~~~~------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 80 PLDKRA----WFVPEVLEGME------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred EHHHHh----hhhHHHHHHhh------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 111111 11122222221 135899999999864 3344444444332 13445777777653 357
Q ss_pred HHHhcCc---cEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh----hCCccCHHHH
Q 001748 455 RSALSRS---QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL----LGKKITLSLA 527 (1018)
Q Consensus 455 ~tI~SRc---q~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl----~g~~IT~edV 527 (1018)
+.|+||+ .++.+.+++.+++.++|++.+..+|+.++++++++|++.+.||+|.+++.|+++.. .+++||.+.|
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~ 229 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFV 229 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 9999999 69999999999999999998999999999999999999999999999999999742 2678999999
Q ss_pred HHHhc
Q 001748 528 YELIG 532 (1018)
Q Consensus 528 ~ellg 532 (1018)
+++++
T Consensus 230 k~~l~ 234 (235)
T PRK08084 230 KEILK 234 (235)
T ss_pred HHHHc
Confidence 99875
No 90
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=1.6e-16 Score=185.60 Aligned_cols=281 Identities=15% Similarity=0.201 Sum_probs=170.7
Q ss_pred Cccccc-C-cHHHH-HHHHHHHHc-----CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccC
Q 001748 305 FFDELV-G-QNVVV-RSLLSAISR-----GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSG 376 (1018)
Q Consensus 305 tFddLV-G-qe~iv-~~L~~aIk~-----grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG 376 (1018)
+|++++ | .+... ..+...... +...+.++||||+|+|||++++++++++...... +.+...
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~-----------v~yi~~ 177 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGK-----------ILYVRS 177 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCC-----------EEEeeH
Confidence 899988 5 33433 333333321 2334678999999999999999999998532100 111111
Q ss_pred CCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--HHHHHHHHHHhcc-CCcEEEEEEecCC---
Q 001748 377 RSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--ETWATVLNSLENI-SQHVVFVMITPEL--- 450 (1018)
Q Consensus 377 ~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--~a~naLLk~LEep-p~~vifILaTn~~--- 450 (1018)
..+....+.+......+.++.. .....|++|||+|.+.. ..+..|+.++... .....+|++++..
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~---------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQF---------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQD 248 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHH---------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHH
Confidence 1110000111111011111111 12456999999999864 3456666665432 1234566666654
Q ss_pred -CcchHHHhcCc---cEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---hh----C
Q 001748 451 -DKLPRSALSRS---QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS---LL----G 519 (1018)
Q Consensus 451 -~kL~~tI~SRc---q~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLs---l~----g 519 (1018)
..+.++|+||+ ..+.+.+|+.+++..+|++.++..|+.++++++++|+....+|+|.+++.|+.++ .+ +
T Consensus 249 l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~ 328 (445)
T PRK12422 249 LKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSH 328 (445)
T ss_pred HhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 25678999999 4899999999999999999999999999999999999999999999999999984 22 5
Q ss_pred CccCHHHHHHHhccC---------ChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc
Q 001748 520 KKITLSLAYELIGIV---------SDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED 590 (1018)
Q Consensus 520 ~~IT~edV~ellg~v---------~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~ 590 (1018)
..||.+++++++... +.+.|.+.+...+.-........ .+.--+...++++-++-.-+ ....
T Consensus 329 ~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~Va~~~~v~~~dl~s~------~R~~~i~~~Rqiamyl~r~~---t~~s 399 (445)
T PRK12422 329 QLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGR------SQSREYVLPRQVAMYLCRQK---LSLS 399 (445)
T ss_pred CCCCHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHhCCCHHHHhcC------CCCcccccHHHHHHHHHHHh---cCCC
Confidence 789999999987532 33445555544444333222211 11111112222222221111 1224
Q ss_pred hhHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 001748 591 CSEARKNFFGKHTSEADMQKLSRALKILSE 620 (1018)
Q Consensus 591 ~~~i~~~~l~r~a~~~s~~~L~~aL~iLse 620 (1018)
..+++..|.+.|++ ++++++.+.+
T Consensus 400 ~~~IG~~fgrdHsT------V~~a~~ki~~ 423 (445)
T PRK12422 400 YVKIGDVFSRDHST------VISSIRAISQ 423 (445)
T ss_pred HHHHHHHhCCChHH------HHHHHHHHHH
Confidence 56677666544654 7887776654
No 91
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.72 E-value=2e-16 Score=185.47 Aligned_cols=218 Identities=21% Similarity=0.281 Sum_probs=145.1
Q ss_pred ccccccCCCCccccc-C--cHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 296 SLSQKFRPNFFDELV-G--QNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 296 ~L~eKyRP~tFddLV-G--qe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
.+..+| +|++++ | ...+...+...... +...+.++||||+|+|||++++++++++....+.. .+
T Consensus 114 ~l~~~~---tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~---------~v 181 (450)
T PRK00149 114 PLNPKY---TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNA---------KV 181 (450)
T ss_pred CCCCCC---cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC---------eE
Confidence 345555 788876 4 23344444444443 33446799999999999999999999986321110 01
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--HHHHHHHHHHhccCC-cEEEEEEec
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--ETWATVLNSLENISQ-HVVFVMITP 448 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--~a~naLLk~LEepp~-~vifILaTn 448 (1018)
.+.....+--..+....... ..++.+... ...||+|||+|.+.. ..+..|+.+++.... ...+|++++
T Consensus 182 ~yi~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 182 VYVTSEKFTNDFVNALRNNT---MEEFKEKYR------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred EEEEHHHHHHHHHHHHHcCc---HHHHHHHHh------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 11111111000001111111 122222221 245999999999864 245666666554321 223555665
Q ss_pred CCC----cchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh----
Q 001748 449 ELD----KLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL---- 517 (1018)
Q Consensus 449 ~~~----kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl---- 517 (1018)
.+. .+.+.++||+. ++.|.+|+.+++..+|+..++..++.++++++++||..+.||+|.+++.|.++..
T Consensus 253 ~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 253 RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASL 332 (450)
T ss_pred CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHh
Confidence 543 36688999985 7999999999999999999999999999999999999999999999999999854
Q ss_pred hCCccCHHHHHHHhccC
Q 001748 518 LGKKITLSLAYELIGIV 534 (1018)
Q Consensus 518 ~g~~IT~edV~ellg~v 534 (1018)
.+++||.+.+++++...
T Consensus 333 ~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 333 TGKPITLELAKEALKDL 349 (450)
T ss_pred hCCCCCHHHHHHHHHHh
Confidence 36789999999988743
No 92
>PRK08727 hypothetical protein; Validated
Probab=99.72 E-value=3.8e-16 Score=168.06 Aligned_cols=199 Identities=17% Similarity=0.269 Sum_probs=142.5
Q ss_pred CcccccC-cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVG-QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVG-qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
+|+++++ ....+..+.... .+.....++|+||+|+|||+++++++.++... | ..+.+
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------------------~--~~~~y 74 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALA-AGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------------------G--RSSAY 74 (233)
T ss_pred ChhhccCCcHHHHHHHHHHH-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------------------C--CcEEE
Confidence 8999885 444444443332 34455679999999999999999999886421 1 11122
Q ss_pred cccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccC--HHHHHHHHHHHhccC-CcEEEEEEecCCC----cchHH
Q 001748 384 VDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLH--GETWATVLNSLENIS-QHVVFVMITPELD----KLPRS 456 (1018)
Q Consensus 384 Idaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls--~~a~naLLk~LEepp-~~vifILaTn~~~----kL~~t 456 (1018)
+.... ....+.++++.+. ...+|||||+|.+. ...+.+|+.+++... ....+|++++.+. .+.+.
T Consensus 75 ~~~~~--~~~~~~~~~~~l~------~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 75 LPLQA--AAGRLRDALEALE------GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred EeHHH--hhhhHHHHHHHHh------cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 22111 1122333444332 23599999999986 334556666665432 2344777776543 35799
Q ss_pred HhcC---ccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh----hCCccCHHHHHH
Q 001748 457 ALSR---SQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL----LGKKITLSLAYE 529 (1018)
Q Consensus 457 I~SR---cq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl----~g~~IT~edV~e 529 (1018)
++|| +..+.|++++.+++..+|++++..+++.++++++++|++.++|++|.++++|+++.. .+++||.+.|++
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~ 226 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRR 226 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 9999 779999999999999999999999999999999999999999999999999998742 367899999999
Q ss_pred Hhcc
Q 001748 530 LIGI 533 (1018)
Q Consensus 530 llg~ 533 (1018)
++..
T Consensus 227 ~l~~ 230 (233)
T PRK08727 227 VLEE 230 (233)
T ss_pred HHhh
Confidence 8753
No 93
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=1.8e-16 Score=190.89 Aligned_cols=220 Identities=16% Similarity=0.196 Sum_probs=149.6
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcCCC----CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMV----TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLC 367 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl----~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C 367 (1018)
....+|++||||++|+||+||++.+..|..++....+ ...++|+||+|+|||++++++|+.++....+...|.
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv--- 145 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT--- 145 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh---
Confidence 3457899999999999999999999999999886543 245999999999999999999999875422211110
Q ss_pred cccceeccCCCCcccc----cccccccchhHHHHHHHHhcCC--C----CCCCceEEEEeCccccCH---HHHHHHHH--
Q 001748 368 RECALFSSGRSRDVKE----VDSVRINRSDRVGSLMKSAFLP--P----FSSRFKIFIIDECQLLHG---ETWATVLN-- 432 (1018)
Q Consensus 368 ~sc~~i~sG~~~Dvie----Idaas~~~vd~IReLie~a~~~--P----~~g~~kVLIIDEaD~Ls~---~a~naLLk-- 432 (1018)
.|...... +..+.. +.. .....+.+++++..+... . ..++++||||||++.+.. .++..+|.
T Consensus 146 -~~~~~~~~-~~~~~s~~~~~~~-~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~ 222 (637)
T TIGR00602 146 -LPDFQKND-HKVTLSLESCFSN-FQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWK 222 (637)
T ss_pred -hhcccccc-cccchhhhhcccc-ccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHH
Confidence 01100000 000000 000 023346677777665411 1 235688999999966543 24444544
Q ss_pred HHhccCCcEEEEEEecCCC---------c------chHHHhc--CccEEEeCCCChhHHHHHHHHHHHHhcCC------C
Q 001748 433 SLENISQHVVFVMITPELD---------K------LPRSALS--RSQKYHFPKIKDGDIASRLRRICVEEAIN------F 489 (1018)
Q Consensus 433 ~LEepp~~vifILaTn~~~---------k------L~~tI~S--Rcq~I~F~~ls~eEI~~~L~~iakkegI~------I 489 (1018)
+.+. ..+.+|+++++.. . +.+.|++ |+..|.|.++...++.+.|..+++.++.. +
T Consensus 223 ~~e~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 223 YVSI--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred hhcC--CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 3343 3445666655321 1 2368887 56689999999999999999999987542 2
Q ss_pred -CHHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Q 001748 490 -DQAALDFIAAKSNGSIRDAEMLLDQLSLLG 519 (1018)
Q Consensus 490 -d~eAL~~LA~~s~GnLR~Al~lLeqLsl~g 519 (1018)
+++++..|+..++||+|.|++.|+.++..+
T Consensus 301 p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 301 PKKTSVELLCQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred CCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence 468999999999999999999999986643
No 94
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.71 E-value=4.2e-16 Score=170.14 Aligned_cols=188 Identities=19% Similarity=0.271 Sum_probs=137.8
Q ss_pred CcccccCcHHHHHHHHHHHH----------cC----CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 305 FFDELVGQNVVVRSLLSAIS----------RG----MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk----------~g----rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
.+++++|.+.+++.+.+.+. .| ....++||+||||||||++|+++|+.+...... +.+.
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~---~~~~---- 76 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVL---SKGH---- 76 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc---cCCc----
Confidence 36789999999988764421 11 123568999999999999999999987532111 1111
Q ss_pred ceeccCCCCcccccccccc------cchhHHHHHHHHhcCCCCCCCceEEEEeCccccC--------HHHHHHHHHHHhc
Q 001748 371 ALFSSGRSRDVKEVDSVRI------NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLH--------GETWATVLNSLEN 436 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~------~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls--------~~a~naLLk~LEe 436 (1018)
+++++.... .....++++++.+. ..||||||+|.|. .++++.|++.+++
T Consensus 77 ----------~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-------~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~ 139 (261)
T TIGR02881 77 ----------LIEVERADLVGEYIGHTAQKTREVIKKAL-------GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED 139 (261)
T ss_pred ----------eEEecHHHhhhhhccchHHHHHHHHHhcc-------CCEEEEechhhhccCCccchHHHHHHHHHHHHhc
Confidence 111111110 11244566666542 3599999999976 4578899999999
Q ss_pred cCCcEEEEEEecCCC-----cchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHc---------
Q 001748 437 ISQHVVFVMITPELD-----KLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKS--------- 501 (1018)
Q Consensus 437 pp~~vifILaTn~~~-----kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s--------- 501 (1018)
...++++|+++...+ .+.+++++|+. .+.|++++.+++.++++..+...++.++++++.+|+...
T Consensus 140 ~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~ 219 (261)
T TIGR02881 140 NRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSR 219 (261)
T ss_pred cCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCC
Confidence 888888887764322 46789999995 799999999999999999999999999999999886542
Q ss_pred -CCCHHHHHHHHHHHH
Q 001748 502 -NGSIRDAEMLLDQLS 516 (1018)
Q Consensus 502 -~GnLR~Al~lLeqLs 516 (1018)
.||.|.+.++++++.
T Consensus 220 ~~gn~R~~~n~~e~a~ 235 (261)
T TIGR02881 220 EFSNARYVRNIIEKAI 235 (261)
T ss_pred CCchHHHHHHHHHHHH
Confidence 489999999999974
No 95
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.70 E-value=4.1e-16 Score=178.47 Aligned_cols=289 Identities=19% Similarity=0.278 Sum_probs=188.3
Q ss_pred cccccccCCCCccccc-C-cHHHHHHHHHHHHc--CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 295 WSLSQKFRPNFFDELV-G-QNVVVRSLLSAISR--GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLV-G-qe~iv~~L~~aIk~--grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
..+..+| +|+++| | .+.....+...+.. |...+.++||||.|.|||+|++++++.+....+.. -
T Consensus 78 ~~l~~~y---tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a---------~ 145 (408)
T COG0593 78 SGLNPKY---TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNA---------R 145 (408)
T ss_pred ccCCCCC---chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCc---------e
Confidence 4466677 888887 4 45555555555544 34567899999999999999999999886543321 1
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH--HHHHHHHHHhccCCcE-EEEEEe
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE--TWATVLNSLENISQHV-VFVMIT 447 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~--a~naLLk~LEepp~~v-ifILaT 447 (1018)
+.+.....+-...+.+...+..+.+++.+ . ..+++||+++.+... .+.+|..++....... .+|+++
T Consensus 146 v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~---------~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvlts 215 (408)
T COG0593 146 VVYLTSEDFTNDFVKALRDNEMEKFKEKY-S---------LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTS 215 (408)
T ss_pred EEeccHHHHHHHHHHHHHhhhHHHHHHhh-c---------cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEc
Confidence 22222222212222333333444454444 3 368999999998754 4667766666543332 455555
Q ss_pred cCCC----cchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh--
Q 001748 448 PELD----KLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-- 518 (1018)
Q Consensus 448 n~~~----kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~-- 518 (1018)
..++ .+.+.|+||+. .+.+.+|+.+....+|+..++..++.++++++.+|+.....|+|.+...|+++..+
T Consensus 216 dr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~ 295 (408)
T COG0593 216 DRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFAL 295 (408)
T ss_pred CCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 4433 46689999976 78999999999999999999999999999999999999999999999999998654
Q ss_pred --CCccCHHHHHHHhcc-------CChhHHHHHHHHHHcCChHHHHHH--HHHHHHcCCCHHHHHHHHHHHHHHHHhccc
Q 001748 519 --GKKITLSLAYELIGI-------VSDDELLDLLDLALSSDTSNTVIR--ARELMRSKIDPMQLISQLANLIMDILAGKC 587 (1018)
Q Consensus 519 --g~~IT~edV~ellg~-------v~ee~If~Lldail~~d~~~al~~--l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~ 587 (1018)
+++||.+.|.+++.. ++.++|.+.+...+.-.....+.. .+.++..++-+|++++.+.
T Consensus 296 ~~~~~iTi~~v~e~L~~~~~~~~~itie~I~~~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL~r~lt----------- 364 (408)
T COG0593 296 FTKRAITIDLVKEILKDLLRAGEKITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLARELT----------- 364 (408)
T ss_pred hcCccCcHHHHHHHHHHhhcccccCCHHHHHHHHHHHhCCCHHHhhccccccccchHHHHHHHHHHHHc-----------
Confidence 568999999988754 344455555544444333322221 1122222222222222222
Q ss_pred ccchhHHHHHHHHhhhhcCCHHHHHHHHHHHHHHH
Q 001748 588 LEDCSEARKNFFGKHTSEADMQKLSRALKILSETE 622 (1018)
Q Consensus 588 ~~~~~~i~~~~l~r~a~~~s~~~L~~aL~iLseae 622 (1018)
....++++..|.+.|++ ++++++.+.+..
T Consensus 365 ~~Slp~IG~~FgrdHtT------V~~a~~kI~~~~ 393 (408)
T COG0593 365 NLSLPEIGKAFGRDHTT------VLHAVRKIEQLI 393 (408)
T ss_pred cCcHHHHHHHhCCCccH------HHHHHHHHHHHH
Confidence 22556777777755655 888877776553
No 96
>PRK06893 DNA replication initiation factor; Validated
Probab=99.70 E-value=4.8e-16 Score=166.80 Aligned_cols=200 Identities=14% Similarity=0.208 Sum_probs=139.6
Q ss_pred CCCcccccCcHH--HHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCc
Q 001748 303 PNFFDELVGQNV--VVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD 380 (1018)
Q Consensus 303 P~tFddLVGqe~--iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~D 380 (1018)
+.+|++++|++. .+..+.+.... ...+.++||||+|+|||++++++|+++..... .
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~---------------------~ 69 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFID-LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQR---------------------T 69 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC---------------------C
Confidence 459999996443 33334444332 33456899999999999999999998742210 1
Q ss_pred ccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--HHHHHHHHHHhccC--CcEEEEEEecCCC----c
Q 001748 381 VKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--ETWATVLNSLENIS--QHVVFVMITPELD----K 452 (1018)
Q Consensus 381 vieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--~a~naLLk~LEepp--~~vifILaTn~~~----k 452 (1018)
+.++..... .....++++.+ ....+++|||++.+.. .....|+.+++... ...++|++++... .
T Consensus 70 ~~y~~~~~~--~~~~~~~~~~~------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~ 141 (229)
T PRK06893 70 AIYIPLSKS--QYFSPAVLENL------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSI 141 (229)
T ss_pred eEEeeHHHh--hhhhHHHHhhc------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc
Confidence 111111100 01112233332 2346999999998852 33445666665432 2344555555432 2
Q ss_pred chHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh---h-CCccCHH
Q 001748 453 LPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL---L-GKKITLS 525 (1018)
Q Consensus 453 L~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl---~-g~~IT~e 525 (1018)
..+.++||+. .+.+.+|+.+++..+|++.+...++.++++++++|++.++||+|.+++.|+++.. . +++||.+
T Consensus 142 ~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~ 221 (229)
T PRK06893 142 KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIP 221 (229)
T ss_pred cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 4489999987 8999999999999999999999999999999999999999999999999998842 2 5689999
Q ss_pred HHHHHhc
Q 001748 526 LAYELIG 532 (1018)
Q Consensus 526 dV~ellg 532 (1018)
.|+++++
T Consensus 222 ~v~~~L~ 228 (229)
T PRK06893 222 FVKEILG 228 (229)
T ss_pred HHHHHhc
Confidence 9999875
No 97
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=3.9e-16 Score=182.49 Aligned_cols=218 Identities=15% Similarity=0.206 Sum_probs=143.8
Q ss_pred ccccccCCCCccccc-CcH--HHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 296 SLSQKFRPNFFDELV-GQN--VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 296 ~L~eKyRP~tFddLV-Gqe--~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
++..+| +|++++ |.. .+.....+........+.++||||+|+|||++++++++++....+.. -+.
T Consensus 97 ~l~~~~---tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~---------~v~ 164 (440)
T PRK14088 97 PLNPDY---TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL---------RVM 164 (440)
T ss_pred CCCCCC---cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCC---------eEE
Confidence 355555 899988 532 23344444444332246799999999999999999999875321110 011
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--HHHHHHHHHHhccCC-cEEEEEEecC
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--ETWATVLNSLENISQ-HVVFVMITPE 449 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--~a~naLLk~LEepp~-~vifILaTn~ 449 (1018)
+.....+-...+...... .+.++.+... ....||+|||++.+.. ..+..|+.++.+... ...+|++++.
T Consensus 165 yi~~~~f~~~~~~~~~~~---~~~~f~~~~~-----~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~ 236 (440)
T PRK14088 165 YITSEKFLNDLVDSMKEG---KLNEFREKYR-----KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_pred EEEHHHHHHHHHHHHhcc---cHHHHHHHHH-----hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 111111000001111111 1122222221 1346999999998853 245566666654322 2345555543
Q ss_pred C-C---cchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh----h
Q 001748 450 L-D---KLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL----L 518 (1018)
Q Consensus 450 ~-~---kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl----~ 518 (1018)
. . .+.+.+.||+. .+.+.+|+.++...+|++.++.+++.++++++++|++.+.||+|.+...|.++.. .
T Consensus 237 ~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~ 316 (440)
T PRK14088 237 EPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETT 316 (440)
T ss_pred CHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHh
Confidence 3 2 46688999987 8999999999999999999999999999999999999999999999999999854 3
Q ss_pred CCccCHHHHHHHhcc
Q 001748 519 GKKITLSLAYELIGI 533 (1018)
Q Consensus 519 g~~IT~edV~ellg~ 533 (1018)
+++||.+.+++++..
T Consensus 317 ~~~it~~~a~~~L~~ 331 (440)
T PRK14088 317 GEEVDLKEAILLLKD 331 (440)
T ss_pred CCCCCHHHHHHHHHH
Confidence 678999999988763
No 98
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=4.8e-16 Score=185.40 Aligned_cols=234 Identities=17% Similarity=0.219 Sum_probs=152.1
Q ss_pred ccccccCCCCccccc-C-cHHHHH-HHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 296 SLSQKFRPNFFDELV-G-QNVVVR-SLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 296 ~L~eKyRP~tFddLV-G-qe~iv~-~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
.|..+| +|++|+ | .+..+. .+...+.. ++..+.++|||++|+|||+|++++++.+....... -+
T Consensus 280 ~L~~~~---TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~---------~V 347 (617)
T PRK14086 280 RLNPKY---TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGT---------RV 347 (617)
T ss_pred CCCCCC---CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCC---------eE
Confidence 355555 899998 4 343333 33433332 33345689999999999999999999874211100 01
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH--HHHHHHHHHhccCC-cEEEEEEec
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE--TWATVLNSLENISQ-HVVFVMITP 448 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~--a~naLLk~LEepp~-~vifILaTn 448 (1018)
.++....+--..+........+.+++ .+ ....||||||++.+... .+..|+.+++.... ...+|++++
T Consensus 348 ~Yitaeef~~el~~al~~~~~~~f~~---~y------~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 348 RYVSSEEFTNEFINSIRDGKGDSFRR---RY------REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred EEeeHHHHHHHHHHHHHhccHHHHHH---Hh------hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 11111111000011111111112222 21 22469999999998642 35566666655433 234556666
Q ss_pred CCC----cchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh----
Q 001748 449 ELD----KLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL---- 517 (1018)
Q Consensus 449 ~~~----kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl---- 517 (1018)
... .+.+.|+||+. ++.+.+++.+....+|+..++..++.++++++++|+....+|+|.+...|.++..
T Consensus 419 ~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~ 498 (617)
T PRK14086 419 RPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASL 498 (617)
T ss_pred CChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 542 56789999986 7899999999999999999999999999999999999999999999999999853
Q ss_pred hCCccCHHHHHHHhccC---------ChhHHHHHHHHHHcCC
Q 001748 518 LGKKITLSLAYELIGIV---------SDDELLDLLDLALSSD 550 (1018)
Q Consensus 518 ~g~~IT~edV~ellg~v---------~ee~If~Lldail~~d 550 (1018)
.++.||.+.+++++... +.+.|.+.+...+.-.
T Consensus 499 ~~~~itl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f~v~ 540 (617)
T PRK14086 499 NRQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFGLT 540 (617)
T ss_pred hCCCCCHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHhCCC
Confidence 36789999998887532 3345555554444433
No 99
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=8e-16 Score=180.24 Aligned_cols=231 Identities=15% Similarity=0.237 Sum_probs=151.8
Q ss_pred CCccccc-Cc-HH-HHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCC
Q 001748 304 NFFDELV-GQ-NV-VVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSR 379 (1018)
Q Consensus 304 ~tFddLV-Gq-e~-iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~ 379 (1018)
.+|++++ |. +. +...+...... |...+.++|||++|+|||+|++++++++....+.. -+.+.....+
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~---------~v~yv~~~~f 182 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDL---------KVSYMSGDEF 182 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCC---------eEEEEEHHHH
Confidence 4899988 53 33 33444444443 33446789999999999999999999875321110 0112222111
Q ss_pred cccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccC--HHHHHHHHHHHhccCC-cEEEEEEecCCC----c
Q 001748 380 DVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLH--GETWATVLNSLENISQ-HVVFVMITPELD----K 452 (1018)
Q Consensus 380 DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls--~~a~naLLk~LEepp~-~vifILaTn~~~----k 452 (1018)
....++.... ..+.+.++.+.. ....||||||+|.+. ...++.|+.++..... ...+|++++.+. .
T Consensus 183 ~~~~~~~l~~-~~~~~~~~~~~~------~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~ 255 (450)
T PRK14087 183 ARKAVDILQK-THKEIEQFKNEI------CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNG 255 (450)
T ss_pred HHHHHHHHHH-hhhHHHHHHHHh------ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhh
Confidence 0000111110 001223333332 234599999999987 4566777666654322 224666666543 4
Q ss_pred chHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh------CCc
Q 001748 453 LPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAI--NFDQAALDFIAAKSNGSIRDAEMLLDQLSLL------GKK 521 (1018)
Q Consensus 453 L~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI--~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~------g~~ 521 (1018)
+.+.|+||+. ++.+.+|+.+++..+|+..++..|+ .++++++++|+..+.||+|.++++|.++... ++.
T Consensus 256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~ 335 (450)
T PRK14087 256 FDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKI 335 (450)
T ss_pred ccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCC
Confidence 6688999986 8999999999999999999998885 6999999999999999999999999998532 268
Q ss_pred cCHHHHHHHhcc--------CChhHHHHHHHHHHcCC
Q 001748 522 ITLSLAYELIGI--------VSDDELLDLLDLALSSD 550 (1018)
Q Consensus 522 IT~edV~ellg~--------v~ee~If~Lldail~~d 550 (1018)
||.+.|++++.. ++.+.|.+.+...+.-.
T Consensus 336 it~~~v~~~l~~~~~~~~~~~t~~~I~~~Va~~~~i~ 372 (450)
T PRK14087 336 ITIEIVSDLFRDIPTSKLGILNVKKIKEVVSEKYGIS 372 (450)
T ss_pred CCHHHHHHHHhhccccccCCCCHHHHHHHHHHHcCCC
Confidence 999999998864 34455666555444433
No 100
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.68 E-value=6.5e-16 Score=178.67 Aligned_cols=217 Identities=22% Similarity=0.283 Sum_probs=143.9
Q ss_pred ccccccCCCCccccc-Cc-HH-HHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 296 SLSQKFRPNFFDELV-GQ-NV-VVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 296 ~L~eKyRP~tFddLV-Gq-e~-iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
++..+| +|++++ |. +. +...+.+.... +...+.++||||+|+|||++++++++++....+.. .+
T Consensus 102 ~l~~~~---tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~---------~v 169 (405)
T TIGR00362 102 PLNPKY---TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNA---------KV 169 (405)
T ss_pred CCCCCC---cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCC---------cE
Confidence 455566 788855 63 33 33344443333 23346789999999999999999999885321110 11
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH--HHHHHHHHHhccC-CcEEEEEEec
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE--TWATVLNSLENIS-QHVVFVMITP 448 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~--a~naLLk~LEepp-~~vifILaTn 448 (1018)
.+.+...+....+........+.+++.+. ...+|+|||+|.+... .+..|+.+++... ....+|++++
T Consensus 170 ~yi~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 170 VYVSSEKFTNDFVNALRNNKMEEFKEKYR---------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred EEEEHHHHHHHHHHHHHcCCHHHHHHHHH---------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 11111111000111111111122222222 2359999999998643 4566777665432 2234566665
Q ss_pred CCC----cchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh----
Q 001748 449 ELD----KLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL---- 517 (1018)
Q Consensus 449 ~~~----kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl---- 517 (1018)
... .+.+.++||+. .+.|.+|+.++...+|+..++..++.++++++++||+...+|+|.+.+.|.++..
T Consensus 241 ~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 241 RPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASL 320 (405)
T ss_pred CCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 432 46688999985 6999999999999999999999999999999999999999999999999998853
Q ss_pred hCCccCHHHHHHHhcc
Q 001748 518 LGKKITLSLAYELIGI 533 (1018)
Q Consensus 518 ~g~~IT~edV~ellg~ 533 (1018)
.+++||.+.+++++..
T Consensus 321 ~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 321 TGKPITLELAKEALKD 336 (405)
T ss_pred hCCCCCHHHHHHHHHH
Confidence 3678999999988864
No 101
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.67 E-value=2.1e-15 Score=159.55 Aligned_cols=199 Identities=14% Similarity=0.261 Sum_probs=144.0
Q ss_pred CCCccccc--CcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCc
Q 001748 303 PNFFDELV--GQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD 380 (1018)
Q Consensus 303 P~tFddLV--Gqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~D 380 (1018)
+.+|++++ +++.++..+++++.. ..+..++|+||+|||||++|+++++.+... + ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------------------~--~~ 68 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG-KGDRFLYLWGESGSGKSHLLQAACAAAEER-------------------G--KS 68 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc-CCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------------------C--Cc
Confidence 34888888 367788899988653 456789999999999999999999987421 1 11
Q ss_pred ccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHH--HHHHHHHHhccC-CcEEEEEEecCC-Cc--ch
Q 001748 381 VKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGET--WATVLNSLENIS-QHVVFVMITPEL-DK--LP 454 (1018)
Q Consensus 381 vieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a--~naLLk~LEepp-~~vifILaTn~~-~k--L~ 454 (1018)
+.+++..... ....++++.+ ....+|||||+|.+.... ++.|+..++... ....+|++++.. .. +.
T Consensus 69 ~~~i~~~~~~--~~~~~~~~~~------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 69 AIYLPLAELA--QADPEVLEGL------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred EEEEeHHHHH--HhHHHHHhhc------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence 2223222111 1112333322 234699999999998643 677777665421 223566666543 22 22
Q ss_pred -HHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh----hCCccCHHH
Q 001748 455 -RSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL----LGKKITLSL 526 (1018)
Q Consensus 455 -~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl----~g~~IT~ed 526 (1018)
+.+.+|+. .+.+++++.+++..+|+..+.+.++.++++++++|+...+||+|.+.+.|+++.. .++.||.+.
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~ 220 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPF 220 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 77888863 8999999999999999999988999999999999999999999999999988742 367899999
Q ss_pred HHHHh
Q 001748 527 AYELI 531 (1018)
Q Consensus 527 V~ell 531 (1018)
|++++
T Consensus 221 ~~~~~ 225 (226)
T TIGR03420 221 VKEVL 225 (226)
T ss_pred HHHHh
Confidence 99876
No 102
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.1e-16 Score=169.99 Aligned_cols=205 Identities=21% Similarity=0.248 Sum_probs=150.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcC------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISRG------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~g------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
.+|+|+-|.++.++.|+++++-. .+|..+|||||||||||.+|+++|+..++. +
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--------------F 213 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--------------F 213 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--------------E
Confidence 48999999999999999998632 567889999999999999999999988642 2
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCH-----------HHHHHHHHHHhc---
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHG-----------ETWATVLNSLEN--- 436 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~LEe--- 436 (1018)
.-+.|+.+--.++. .|..-+|++++-+. ..| .||||||+|.+.. +.|..|+.+|.+
T Consensus 214 IrvvgSElVqKYiG----EGaRlVRelF~lArekaP-----sIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 214 IRVVGSELVQKYIG----EGARLVRELFELAREKAP-----SIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred EEeccHHHHHHHhc----cchHHHHHHHHHHhhcCC-----eEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 23334332222222 34467899998876 334 5999999998863 356666655543
Q ss_pred --cCCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHH
Q 001748 437 --ISQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEM 510 (1018)
Q Consensus 437 --pp~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~ 510 (1018)
+..++.+|++||.++-|+|+|++ |+. .|+|+.|+.+...++|+-+.++.++. ++-.++.||+.++| +-.++..
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlka 363 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHH
Confidence 45699999999999999999998 555 79999999999999999888877663 33347788888877 5555555
Q ss_pred HHHHHH---hh--CCccCHHHHHHHhc
Q 001748 511 LLDQLS---LL--GKKITLSLAYELIG 532 (1018)
Q Consensus 511 lLeqLs---l~--g~~IT~edV~ellg 532 (1018)
.+..+- +. ...||.+|..+.+.
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHH
Confidence 555543 22 24577777665543
No 103
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.67 E-value=5.6e-15 Score=167.57 Aligned_cols=231 Identities=17% Similarity=0.207 Sum_probs=151.7
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHc---CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccc
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISR---GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~---grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~s 369 (1018)
....|...|.|. +++|++..++.|...+.. +..++.++|+||+|+|||++++.+++.+.........++
T Consensus 4 ~~~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~----- 75 (365)
T TIGR02928 4 NRDLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRV----- 75 (365)
T ss_pred ChhhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCce-----
Confidence 456788899895 789999999888888764 566678999999999999999999998753211111110
Q ss_pred cceeccCCCC----ccc-----ccc--c-----ccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH---HHHHHH
Q 001748 370 CALFSSGRSR----DVK-----EVD--S-----VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG---ETWATV 430 (1018)
Q Consensus 370 c~~i~sG~~~----Dvi-----eId--a-----as~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~---~a~naL 430 (1018)
...+.+.... .+. .+. . ......+.++.+.+.+. ..+...||||||+|.|.. +....|
T Consensus 76 ~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~~~~~L~~l 152 (365)
T TIGR02928 76 VTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGDDDDLLYQL 152 (365)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccCCcHHHHhH
Confidence 0011111000 000 000 0 00000112233333332 123457999999999952 334455
Q ss_pred HHH--HhccC-CcEEEEEEecCCC---cchHHHhcCcc--EEEeCCCChhHHHHHHHHHHHH--hcCCCCHHHHHHHHHH
Q 001748 431 LNS--LENIS-QHVVFVMITPELD---KLPRSALSRSQ--KYHFPKIKDGDIASRLRRICVE--EAINFDQAALDFIAAK 500 (1018)
Q Consensus 431 Lk~--LEepp-~~vifILaTn~~~---kL~~tI~SRcq--~I~F~~ls~eEI~~~L~~iakk--egI~Id~eAL~~LA~~ 500 (1018)
++. ..+.+ ..+.+|++++.++ .+.+.+.+|+. .+.|++++.+++.++|+.+++. .+..++++++++++..
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 555 23333 5788899998875 57788889985 7999999999999999998863 2334888888776654
Q ss_pred ---cCCCHHHHHHHHHHHHhh-----CCccCHHHHHHHhccC
Q 001748 501 ---SNGSIRDAEMLLDQLSLL-----GKKITLSLAYELIGIV 534 (1018)
Q Consensus 501 ---s~GnLR~Al~lLeqLsl~-----g~~IT~edV~ellg~v 534 (1018)
+.|++|.++++|+.+... ...||.++|.+.+...
T Consensus 233 ~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 233 AAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 469999999999987542 2469999988876544
No 104
>PRK05642 DNA replication initiation factor; Validated
Probab=99.66 E-value=3.9e-15 Score=160.44 Aligned_cols=199 Identities=15% Similarity=0.233 Sum_probs=138.3
Q ss_pred Cccccc-CcHHHH-HHHHHHHHc--CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCc
Q 001748 305 FFDELV-GQNVVV-RSLLSAISR--GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD 380 (1018)
Q Consensus 305 tFddLV-Gqe~iv-~~L~~aIk~--grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~D 380 (1018)
+|++++ |.+..+ ..+.++... +...+.++|+||+|+|||++++++++++... | ..
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------------------~--~~ 75 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR-------------------G--EP 75 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------------------C--Cc
Confidence 899988 544333 333333222 2223678999999999999999999877421 0 11
Q ss_pred ccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--HHHHHHHHHHhccCC-cEEEEEEecC-CC---cc
Q 001748 381 VKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--ETWATVLNSLENISQ-HVVFVMITPE-LD---KL 453 (1018)
Q Consensus 381 vieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--~a~naLLk~LEepp~-~vifILaTn~-~~---kL 453 (1018)
+.+++..... .....+++.+. ...+++|||++.+.. .....|+.+++.... ...+|++++. +. .+
T Consensus 76 v~y~~~~~~~--~~~~~~~~~~~------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~ 147 (234)
T PRK05642 76 AVYLPLAELL--DRGPELLDNLE------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIK 147 (234)
T ss_pred EEEeeHHHHH--hhhHHHHHhhh------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCcc
Confidence 2222221110 01122333322 225899999998853 345667777765433 3445565554 32 34
Q ss_pred hHHHhcCc---cEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---hh-CCccCHHH
Q 001748 454 PRSALSRS---QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS---LL-GKKITLSL 526 (1018)
Q Consensus 454 ~~tI~SRc---q~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLs---l~-g~~IT~ed 526 (1018)
.+.++||+ .++.+.+++.++...+|+..+...|+.++++++++|++..++|+|.+++.|+.+. +. +++||...
T Consensus 148 ~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~ 227 (234)
T PRK05642 148 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPF 227 (234)
T ss_pred CccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHH
Confidence 68999998 6899999999999999998888889999999999999999999999999999884 33 57899999
Q ss_pred HHHHhc
Q 001748 527 AYELIG 532 (1018)
Q Consensus 527 V~ellg 532 (1018)
|+++++
T Consensus 228 ~~~~L~ 233 (234)
T PRK05642 228 LKETLG 233 (234)
T ss_pred HHHHhc
Confidence 999875
No 105
>PRK06620 hypothetical protein; Validated
Probab=99.66 E-value=3.5e-15 Score=158.83 Aligned_cols=191 Identities=16% Similarity=0.275 Sum_probs=136.4
Q ss_pred cccccccCCCCccccc-C--cHHHHHHHHHHHHc-CCCC--cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 001748 295 WSLSQKFRPNFFDELV-G--QNVVVRSLLSAISR-GMVT--SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCR 368 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLV-G--qe~iv~~L~~aIk~-grl~--~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~ 368 (1018)
.++..+| +|+++| | ...+...+.++... +.-+ +.++||||+|+|||++++++++..+.
T Consensus 7 ~~~~~~~---tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~------------- 70 (214)
T PRK06620 7 FTTSSKY---HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA------------- 70 (214)
T ss_pred CCCCCCC---CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-------------
Confidence 3445555 678877 4 34455666665542 2112 56899999999999999998775431
Q ss_pred ccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEec
Q 001748 369 ECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITP 448 (1018)
Q Consensus 369 sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn 448 (1018)
.+.. .... ..+.. ....+++|||+|.+....+..+++.+.+.. . .+|++++
T Consensus 71 ---~~~~----------~~~~-----~~~~~---------~~~d~lliDdi~~~~~~~lf~l~N~~~e~g-~-~ilits~ 121 (214)
T PRK06620 71 ---YIIK----------DIFF-----NEEIL---------EKYNAFIIEDIENWQEPALLHIFNIINEKQ-K-YLLLTSS 121 (214)
T ss_pred ---EEcc----------hhhh-----chhHH---------hcCCEEEEeccccchHHHHHHHHHHHHhcC-C-EEEEEcC
Confidence 0100 0000 00111 123689999999886555556666666643 3 3444443
Q ss_pred -CCC--cchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh----h
Q 001748 449 -ELD--KLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL----L 518 (1018)
Q Consensus 449 -~~~--kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl----~ 518 (1018)
.+. .+ +.|+||+. ++.+.+|+.+++..++++.+...|+.++++++++|+..+.||+|.+++.|+.+.. .
T Consensus 122 ~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~ 200 (214)
T PRK06620 122 DKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALIS 200 (214)
T ss_pred CCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHc
Confidence 343 35 89999998 8999999999999999999998999999999999999999999999999999743 2
Q ss_pred CCccCHHHHHHHh
Q 001748 519 GKKITLSLAYELI 531 (1018)
Q Consensus 519 g~~IT~edV~ell 531 (1018)
+++||.+.|++++
T Consensus 201 ~~~it~~~~~~~l 213 (214)
T PRK06620 201 KRKITISLVKEVL 213 (214)
T ss_pred CCCCCHHHHHHHh
Confidence 5679999999876
No 106
>CHL00181 cbbX CbbX; Provisional
Probab=99.66 E-value=3.7e-15 Score=165.31 Aligned_cols=188 Identities=20% Similarity=0.227 Sum_probs=136.1
Q ss_pred cccccCcHHHHHHHHHHHH----------cC----CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 306 FDELVGQNVVVRSLLSAIS----------RG----MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 306 FddLVGqe~iv~~L~~aIk----------~g----rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
+++++|.+.+++++.+.+. .| ..+.++||+||||||||++|+++|+.+........
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~---------- 91 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK---------- 91 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC----------
Confidence 4579999999987765532 11 23456899999999999999999998743211100
Q ss_pred eeccCCCCcccccccccc------cchhHHHHHHHHhcCCCCCCCceEEEEeCcccc---------CHHHHHHHHHHHhc
Q 001748 372 LFSSGRSRDVKEVDSVRI------NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLL---------HGETWATVLNSLEN 436 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~------~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~L---------s~~a~naLLk~LEe 436 (1018)
+ .+++++.... .....++++++.+ .+.||||||++.| ..++++.|++.|++
T Consensus 92 ----~---~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 92 ----G---HLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred ----C---ceEEecHHHHHHHHhccchHHHHHHHHHc-------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 0 1222221110 0112345555553 2369999999987 45688999999998
Q ss_pred cCCcEEEEEEecCCC-----cchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------cC
Q 001748 437 ISQHVVFVMITPELD-----KLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAK--------SN 502 (1018)
Q Consensus 437 pp~~vifILaTn~~~-----kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~--------s~ 502 (1018)
...++++|+++.... .+.|++++|+. .+.|++++.+++.+++...+++.+..+++++...+... .-
T Consensus 158 ~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~ 237 (287)
T CHL00181 158 QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLF 237 (287)
T ss_pred CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCC
Confidence 888888888875322 23489999998 89999999999999999999999999999987766664 23
Q ss_pred CCHHHHHHHHHHHHh
Q 001748 503 GSIRDAEMLLDQLSL 517 (1018)
Q Consensus 503 GnLR~Al~lLeqLsl 517 (1018)
||.|.+.++++++..
T Consensus 238 GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 238 ANARSVRNALDRARM 252 (287)
T ss_pred ccHHHHHHHHHHHHH
Confidence 899999999998854
No 107
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.65 E-value=6.4e-15 Score=178.57 Aligned_cols=236 Identities=22% Similarity=0.241 Sum_probs=159.5
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
...++.+.+||.+|++++||+..+..+...+..+. +..++|+||+|||||++|+++++........ |+. ...-..
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~---~~~-~~~~fv 214 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPF-PQHIILYGPPGVGKTTAARLALEEAKKLKHT---PFA-EDAPFV 214 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCC---ccc-CCCCeE
Confidence 34667888999999999999999999988887554 4568999999999999999998876322111 000 000011
Q ss_pred eccCCCC--ccccc-----ccccccchhHHHHHHHHhcC------CCCCCCceEEEEeCccccCHHHHHHHHHHHhcc--
Q 001748 373 FSSGRSR--DVKEV-----DSVRINRSDRVGSLMKSAFL------PPFSSRFKIFIIDECQLLHGETWATVLNSLENI-- 437 (1018)
Q Consensus 373 i~sG~~~--DvieI-----daas~~~vd~IReLie~a~~------~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-- 437 (1018)
...+... +...+ ...........+..+..... ........+|||||++.|....++.|++.|++.
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v 294 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRV 294 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeE
Confidence 1112111 00000 00000000011111111110 011223469999999999999999999999762
Q ss_pred --------------------------CCcEEEEEEec-CCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCC
Q 001748 438 --------------------------SQHVVFVMITP-ELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFD 490 (1018)
Q Consensus 438 --------------------------p~~vifILaTn-~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id 490 (1018)
+..+++|.+|+ ++..+.++|++||..+.|++++.+++..++++.+.+.++.++
T Consensus 295 ~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls 374 (615)
T TIGR02903 295 EFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA 374 (615)
T ss_pred EeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 12345555554 456789999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhh----------C---CccCHHHHHHHhccC
Q 001748 491 QAALDFIAAKSNGSIRDAEMLLDQLSLL----------G---KKITLSLAYELIGIV 534 (1018)
Q Consensus 491 ~eAL~~LA~~s~GnLR~Al~lLeqLsl~----------g---~~IT~edV~ellg~v 534 (1018)
+++++.|++.+. +.|.+++.|+.+..+ . ..|+.++|+++++..
T Consensus 375 ~eal~~L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 375 AGVEELIARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 999999998764 679999999776322 0 157888888887754
No 108
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.64 E-value=1.2e-14 Score=175.53 Aligned_cols=229 Identities=17% Similarity=0.201 Sum_probs=150.4
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHH----cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAIS----RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk----~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
..|...|.| +.|.|++..++.|...|. .....+.++|+|+||||||++++.+.+.|.........| ...
T Consensus 746 rvL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp----~f~ 818 (1164)
T PTZ00112 746 RMMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLP----SFN 818 (1164)
T ss_pred HHcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCC----Cce
Confidence 456677888 678898888877766654 233334567999999999999999998874221111111 001
Q ss_pred ceeccCCC---Cc-c-c----cc-c---cccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhc-
Q 001748 371 ALFSSGRS---RD-V-K----EV-D---SVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLEN- 436 (1018)
Q Consensus 371 ~~i~sG~~---~D-v-i----eI-d---aas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEe- 436 (1018)
+.+.++.. +. + . .+ . .......+.+..++..+.. ......||||||+|.|....+..|+.+++.
T Consensus 819 vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK~QDVLYnLFR~~ 896 (1164)
T PTZ00112 819 VFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITKTQKVLFTLFDWP 896 (1164)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCccHHHHHHHHHHHh
Confidence 11111110 00 0 0 00 0 0000111223333333211 112345999999999987666667666653
Q ss_pred --cCCcEEEEEEecCC---CcchHHHhcCcc--EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHH---HcCCCHH
Q 001748 437 --ISQHVVFVMITPEL---DKLPRSALSRSQ--KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAA---KSNGSIR 506 (1018)
Q Consensus 437 --pp~~vifILaTn~~---~kL~~tI~SRcq--~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~---~s~GnLR 506 (1018)
....++||++++.. ..+++.+++|+. .+.|+|++.+++.++|+.++......++++|++++|+ ...||+|
T Consensus 897 ~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDAR 976 (1164)
T PTZ00112 897 TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIR 976 (1164)
T ss_pred hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHH
Confidence 34567888888763 467789999987 4999999999999999999986555689999999998 5679999
Q ss_pred HHHHHHHHHHhh--CCccCHHHHHHHhc
Q 001748 507 DAEMLLDQLSLL--GKKITLSLAYELIG 532 (1018)
Q Consensus 507 ~Al~lLeqLsl~--g~~IT~edV~ellg 532 (1018)
.|+.+|..+... +..|+.++|.+++.
T Consensus 977 KALDILRrAgEikegskVT~eHVrkAle 1004 (1164)
T PTZ00112 977 KALQICRKAFENKRGQKIVPRDITEATN 1004 (1164)
T ss_pred HHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 999999988654 44678887777664
No 109
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.1e-15 Score=170.25 Aligned_cols=202 Identities=23% Similarity=0.266 Sum_probs=155.6
Q ss_pred CCCcccccCcHHHHHHHHHHHH-----------cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 303 PNFFDELVGQNVVVRSLLSAIS-----------RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 303 P~tFddLVGqe~iv~~L~~aIk-----------~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
-.+|+|+.|-++.++.|.+.+. .|++|..+||.||||||||.|||++|.+.+- -+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V--------------PF 365 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV--------------PF 365 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC--------------Ce
Confidence 3579999999999988887764 4799999999999999999999999987753 26
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCH-----------HHHHHHHHHHhccC-
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHG-----------ETWATVLNSLENIS- 438 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~LEepp- 438 (1018)
.+.+|..||-..+.. +..+||+|+..+. ..| -||||||+|.+.. .+.|.||--|+.+.
T Consensus 366 F~~sGSEFdEm~VGv----GArRVRdLF~aAk~~AP-----cIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 366 FYASGSEFDEMFVGV----GARRVRDLFAAAKARAP-----CIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred Eeccccchhhhhhcc----cHHHHHHHHHHHHhcCC-----eEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 677888887655542 4478999999987 444 5999999998753 36788888888654
Q ss_pred -CcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHcCC-CHHHHHHHH
Q 001748 439 -QHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFD-QAALDFIAAKSNG-SIRDAEMLL 512 (1018)
Q Consensus 439 -~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id-~eAL~~LA~~s~G-nLR~Al~lL 512 (1018)
..+++|.+||.++.|+++|.+ ||. .+..+.|+..-..++|..++.+ +.++ +-.+..||+-+.| +-.++.|++
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 478888899999999999998 565 6778888877777777777654 2222 2224567887777 788999999
Q ss_pred HHHHhh-----CCccCHHHHHH
Q 001748 513 DQLSLL-----GKKITLSLAYE 529 (1018)
Q Consensus 513 eqLsl~-----g~~IT~edV~e 529 (1018)
.+++++ ...+|+.+++.
T Consensus 515 NqAAlkAa~dga~~VtM~~LE~ 536 (752)
T KOG0734|consen 515 NQAALKAAVDGAEMVTMKHLEF 536 (752)
T ss_pred HHHHHHHHhcCcccccHHHHhh
Confidence 998775 24567776654
No 110
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-14 Score=171.00 Aligned_cols=194 Identities=20% Similarity=0.223 Sum_probs=146.9
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHc-----------C-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 001748 301 FRPNFFDELVGQNVVVRSLLSAISR-----------G-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCR 368 (1018)
Q Consensus 301 yRP~tFddLVGqe~iv~~L~~aIk~-----------g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~ 368 (1018)
....+|+||-|++++++.|+++|.- | .++..+|||||||||||++|+++|++..+.
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n------------ 495 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN------------ 495 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC------------
Confidence 3346899999999999999988752 3 567889999999999999999999987643
Q ss_pred ccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-----------HHHHHHHHHhcc
Q 001748 369 ECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-----------TWATVLNSLENI 437 (1018)
Q Consensus 369 sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-----------a~naLLk~LEep 437 (1018)
+....|...-..++. .+...++++++.+...+ +-|+|+||+|.+..+ ..+.||+-|+..
T Consensus 496 --FlsvkgpEL~sk~vG----eSEr~ir~iF~kAR~~a----P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~ 565 (693)
T KOG0730|consen 496 --FLSVKGPELFSKYVG----ESERAIREVFRKARQVA----PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL 565 (693)
T ss_pred --eeeccCHHHHHHhcC----chHHHHHHHHHHHhhcC----CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc
Confidence 222223222112222 33467999999987443 259999999998643 567788888754
Q ss_pred --CCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHcCC-CHHHHHH
Q 001748 438 --SQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQA-ALDFIAAKSNG-SIRDAEM 510 (1018)
Q Consensus 438 --p~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~e-AL~~LA~~s~G-nLR~Al~ 510 (1018)
..++++|.+||.++.|+++|++ |+. .+.++.|+.+...++|+..+++..+ +++ .++.||+.++| +-.++..
T Consensus 566 e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~--~~~vdl~~La~~T~g~SGAel~~ 643 (693)
T KOG0730|consen 566 EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF--SEDVDLEELAQATEGYSGAEIVA 643 (693)
T ss_pred cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC--CccccHHHHHHHhccCChHHHHH
Confidence 3478888889999999999999 777 6788888888888899888775544 444 68889999887 7777877
Q ss_pred HHHHHHhh
Q 001748 511 LLDQLSLL 518 (1018)
Q Consensus 511 lLeqLsl~ 518 (1018)
+++.++..
T Consensus 644 lCq~A~~~ 651 (693)
T KOG0730|consen 644 VCQEAALL 651 (693)
T ss_pred HHHHHHHH
Confidence 77776544
No 111
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.61 E-value=1.5e-14 Score=160.17 Aligned_cols=194 Identities=21% Similarity=0.225 Sum_probs=138.5
Q ss_pred ccccCcHHHHHHHHHHHH----------cC----CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 307 DELVGQNVVVRSLLSAIS----------RG----MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk----------~g----rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
++++|.+.+++.|.+.+. .| .....+||+||||||||++|+++|+.+.........+ ..
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~-------~v 94 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGH-------LV 94 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccce-------EE
Confidence 369999999988766432 11 1234799999999999999999999885321111000 11
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCcccc---------CHHHHHHHHHHHhccCCcEEE
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLL---------HGETWATVLNSLENISQHVVF 443 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~L---------s~~a~naLLk~LEepp~~vif 443 (1018)
..... ++. ..........++++++.+ ...||||||++.| ..++++.|++.|++...++++
T Consensus 95 ~v~~~--~l~--~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~v 163 (284)
T TIGR02880 95 SVTRD--DLV--GQYIGHTAPKTKEILKRA-------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVV 163 (284)
T ss_pred EecHH--HHh--HhhcccchHHHHHHHHHc-------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 11110 110 000001123456666654 2359999999987 355788999999988888888
Q ss_pred EEEecCC--C---cchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHc--------CCCHHHHH
Q 001748 444 VMITPEL--D---KLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKS--------NGSIRDAE 509 (1018)
Q Consensus 444 ILaTn~~--~---kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s--------~GnLR~Al 509 (1018)
|++++.. + .+.+++.+|+. .+.|++++.+++..+++..+++.+..++++++..+..+. .||.|.+.
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lr 243 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIR 243 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 8877543 2 34689999997 799999999999999999999999999999998887762 49999999
Q ss_pred HHHHHHHhh
Q 001748 510 MLLDQLSLL 518 (1018)
Q Consensus 510 ~lLeqLsl~ 518 (1018)
+.++++...
T Consensus 244 n~ve~~~~~ 252 (284)
T TIGR02880 244 NAIDRARLR 252 (284)
T ss_pred HHHHHHHHH
Confidence 999998643
No 112
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.60 E-value=9.8e-15 Score=155.91 Aligned_cols=196 Identities=19% Similarity=0.253 Sum_probs=126.2
Q ss_pred Cccccc-Cc-HHHHHHHHHHHHcC--CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCc
Q 001748 305 FFDELV-GQ-NVVVRSLLSAISRG--MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD 380 (1018)
Q Consensus 305 tFddLV-Gq-e~iv~~L~~aIk~g--rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~D 380 (1018)
+|+++| |. ++.+-.....+..+ ...+.++||||+|+|||+|.+++++++....+.. .+.+.....+.
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~---------~v~y~~~~~f~ 76 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGK---------RVVYLSAEEFI 76 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS----------EEEEEHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccc---------cceeecHHHHH
Confidence 899997 63 45555555555443 2335689999999999999999999875332211 01111111110
Q ss_pred ccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH--HHHHHHHHHhccC-CcEEEEEEecCC-C---cc
Q 001748 381 VKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE--TWATVLNSLENIS-QHVVFVMITPEL-D---KL 453 (1018)
Q Consensus 381 vieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~--a~naLLk~LEepp-~~vifILaTn~~-~---kL 453 (1018)
-..+++... +.+.++.+... ...+++||++|.+... .+.+|+.+++... ....+|+++... . .+
T Consensus 77 ~~~~~~~~~---~~~~~~~~~~~------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 77 REFADALRD---GEIEEFKDRLR------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHHT---TSHHHHHHHHC------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHHc---ccchhhhhhhh------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 001111111 22333444432 3469999999999865 3677777776532 223566666443 2 46
Q ss_pred hHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Q 001748 454 PRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL 518 (1018)
Q Consensus 454 ~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl~ 518 (1018)
.+.++||+. .+.+.+|+.++...+|++.+...|+.++++++++|++...+|+|.+...|+++..+
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 788999976 79999999999999999999999999999999999999999999999999998764
No 113
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.60 E-value=2e-13 Score=156.61 Aligned_cols=234 Identities=20% Similarity=0.204 Sum_probs=153.8
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHc---CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCC---CCCCCC
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISR---GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE---DQKPCG 365 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~---grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~---~~~PCg 365 (1018)
..+.+|...|.| +.++|.+..++.|...+.. +..+..++|+||||+|||++++.+++.+....+. ....|.
T Consensus 18 ~~~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 18 KDEEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred CChhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 466777777877 5688999888888877743 4455678999999999999999999987532100 000111
Q ss_pred CccccceeccCCCCccccccc--c--cccchh-HHHHHHHHhcCCCCCCCceEEEEeCccccC----HHHHHHHHHHHhc
Q 001748 366 LCRECALFSSGRSRDVKEVDS--V--RINRSD-RVGSLMKSAFLPPFSSRFKIFIIDECQLLH----GETWATVLNSLEN 436 (1018)
Q Consensus 366 ~C~sc~~i~sG~~~DvieIda--a--s~~~vd-~IReLie~a~~~P~~g~~kVLIIDEaD~Ls----~~a~naLLk~LEe 436 (1018)
.+..-..+... -+..+.. . .....+ .+..+.+.+.. .+.+.||+|||+|.+. .+.+..|++.++.
T Consensus 95 ~~~~~~~~~~~---i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~ 168 (394)
T PRK00411 95 IDRTRYAIFSE---IARQLFGHPPPSSGLSFDELFDKIAEYLDE---RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE 168 (394)
T ss_pred cCCCHHHHHHH---HHHHhcCCCCCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCHhHhhccCCchHHHHHHHhhhc
Confidence 11100000000 0000000 0 000111 12222222211 2345799999999986 4466777777766
Q ss_pred cCC-cEEEEEEecCCC---cchHHHhcCcc--EEEeCCCChhHHHHHHHHHHHHh--cCCCCHHHHHHHHHHc---CCCH
Q 001748 437 ISQ-HVVFVMITPELD---KLPRSALSRSQ--KYHFPKIKDGDIASRLRRICVEE--AINFDQAALDFIAAKS---NGSI 505 (1018)
Q Consensus 437 pp~-~vifILaTn~~~---kL~~tI~SRcq--~I~F~~ls~eEI~~~L~~iakke--gI~Id~eAL~~LA~~s---~GnL 505 (1018)
.+. ++.+|++++..+ .+.+.+.+|+. .+.|++++.+++.++|+..++.. ...+++++++++++.+ .|++
T Consensus 169 ~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 169 YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 544 677888888764 46677888874 78999999999999999988653 3358999999999888 7999
Q ss_pred HHHHHHHHHHHhh-----CCccCHHHHHHHhccC
Q 001748 506 RDAEMLLDQLSLL-----GKKITLSLAYELIGIV 534 (1018)
Q Consensus 506 R~Al~lLeqLsl~-----g~~IT~edV~ellg~v 534 (1018)
|.++++|..+... ...||.++|.+++...
T Consensus 249 r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 9999999886432 2468999998877654
No 114
>PRK09087 hypothetical protein; Validated
Probab=99.59 E-value=1.8e-14 Score=154.71 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=137.9
Q ss_pred CCcccccccCCCCcccccC--cH-HHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccc
Q 001748 293 TPWSLSQKFRPNFFDELVG--QN-VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVG--qe-~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~s 369 (1018)
.+.++..+| +|++++. .+ .++..+.++. +...+.++|+||+|+||||+++++++....
T Consensus 10 l~~~~~~~~---~~~~Fi~~~~N~~a~~~l~~~~--~~~~~~l~l~G~~GsGKThLl~~~~~~~~~-------------- 70 (226)
T PRK09087 10 LNFSHDPAY---GRDDLLVTESNRAAVSLVDHWP--NWPSPVVVLAGPVGSGKTHLASIWREKSDA-------------- 70 (226)
T ss_pred eCCCCCCCC---ChhceeecCchHHHHHHHHhcc--cCCCCeEEEECCCCCCHHHHHHHHHHhcCC--------------
Confidence 334444444 7999883 24 3445444433 333456999999999999999998876421
Q ss_pred cceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCC-cEEEEEEec
Q 001748 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQ-HVVFVMITP 448 (1018)
Q Consensus 370 c~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~-~vifILaTn 448 (1018)
.+++.... ..+++..+. ..+|+|||+|.+.. .+.+|+.++..... ...+|++++
T Consensus 71 ------------~~i~~~~~-----~~~~~~~~~-------~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 71 ------------LLIHPNEI-----GSDAANAAA-------EGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred ------------EEecHHHc-----chHHHHhhh-------cCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECC
Confidence 12221110 111222111 13899999998742 24455555543322 344566555
Q ss_pred CCC----cchHHHhcCc---cEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---hh
Q 001748 449 ELD----KLPRSALSRS---QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS---LL 518 (1018)
Q Consensus 449 ~~~----kL~~tI~SRc---q~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLs---l~ 518 (1018)
... ...+.++||+ .++.+.+++.+++..+|++.++..++.++++++++|++.+.|+++.++..|+++. +.
T Consensus 126 ~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~ 205 (226)
T PRK09087 126 LWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALE 205 (226)
T ss_pred CChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 432 2468899998 6999999999999999999999999999999999999999999999999888773 23
Q ss_pred -CCccCHHHHHHHhccC
Q 001748 519 -GKKITLSLAYELIGIV 534 (1018)
Q Consensus 519 -g~~IT~edV~ellg~v 534 (1018)
+++||...|++++...
T Consensus 206 ~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 206 RKSRITRALAAEVLNEM 222 (226)
T ss_pred hCCCCCHHHHHHHHHhh
Confidence 6789999999998654
No 115
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.59 E-value=3e-14 Score=169.02 Aligned_cols=208 Identities=22% Similarity=0.225 Sum_probs=148.1
Q ss_pred CCCcccccCcHHHHHHHHHHHH-----------cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 303 PNFFDELVGQNVVVRSLLSAIS-----------RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 303 P~tFddLVGqe~iv~~L~~aIk-----------~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
..+|+|++|+++++..+.+.+. ...++..+||+||||||||++|+++|.+++...
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-------------- 116 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-------------- 116 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe--------------
Confidence 4589999999999888876654 245677899999999999999999999875320
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--------------HHHHHHHHHHhcc
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--------------ETWATVLNSLENI 437 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--------------~a~naLLk~LEep 437 (1018)
...++. ++.. .....+...++++++.+... .+.||||||+|.+.. ...+.||..|+..
T Consensus 117 ~~i~~~--~~~~--~~~g~~~~~l~~~f~~a~~~----~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 117 FSISGS--DFVE--MFVGVGASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred eeccHH--HHHH--HHhcccHHHHHHHHHHHHhc----CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 111111 1111 00112335678888876421 235999999998743 2456777777654
Q ss_pred C--CcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHH
Q 001748 438 S--QHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEML 511 (1018)
Q Consensus 438 p--~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~l 511 (1018)
. ..+++|.+||.++.+++++++ |+. .+.|+.|+.++..++++..+....+. ++..+..|+..+.| +.+++.++
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHH
Confidence 3 367888889999999999997 565 79999999999999998888765543 34457788998887 77787777
Q ss_pred HHHHHhh-----CCccCHHHHHHHhcc
Q 001748 512 LDQLSLL-----GKKITLSLAYELIGI 533 (1018)
Q Consensus 512 LeqLsl~-----g~~IT~edV~ellg~ 533 (1018)
+..++.. ...||.+++.+.+..
T Consensus 268 ~~eA~~~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 268 LNEAALLAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 7765432 346898888876653
No 116
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.58 E-value=3.7e-14 Score=168.18 Aligned_cols=222 Identities=22% Similarity=0.312 Sum_probs=148.9
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHHcC----CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRG----MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLC 367 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~g----rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C 367 (1018)
....+|++||+|++.+||+.++.-++.++.|++.. .....+||+||+|+|||+++++||++++..-.+...|-..-
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 35678999999999999999999999999998752 22457999999999999999999999987655444442210
Q ss_pred cccceeccCCCCccccc-cccc--ccchhHHHHH-HHHhcCCCC-------CCCceEEEEeCccccCH----HHHHHHHH
Q 001748 368 RECALFSSGRSRDVKEV-DSVR--INRSDRVGSL-MKSAFLPPF-------SSRFKIFIIDECQLLHG----ETWATVLN 432 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieI-daas--~~~vd~IReL-ie~a~~~P~-------~g~~kVLIIDEaD~Ls~----~a~naLLk 432 (1018)
..- ....++... +... ....+.+.++ +....+... ....+||+|+|+-.+.. ...++|.+
T Consensus 84 ~~~-----~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~ 158 (519)
T PF03215_consen 84 ESD-----NQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQ 158 (519)
T ss_pred ccc-----cccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHH
Confidence 000 000011000 0000 1122344444 333333221 24689999999876542 23455666
Q ss_pred HHhccCC-cEEEEEEecC-----C---------C-cchHHHhcC--ccEEEeCCCChhHHHHHHHHHHHHh-----cC-C
Q 001748 433 SLENISQ-HVVFVMITPE-----L---------D-KLPRSALSR--SQKYHFPKIKDGDIASRLRRICVEE-----AI-N 488 (1018)
Q Consensus 433 ~LEepp~-~vifILaTn~-----~---------~-kL~~tI~SR--cq~I~F~~ls~eEI~~~L~~iakke-----gI-~ 488 (1018)
++..... .++||++-.+ . + -+++.|+.. +..|.|.|+...-+.+.|..++..| +. .
T Consensus 159 ~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~ 238 (519)
T PF03215_consen 159 YLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNK 238 (519)
T ss_pred HHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCcc
Confidence 6665544 6677776211 0 1 244666654 5589999999999999999999988 32 2
Q ss_pred CC--HHHHHHHHHHcCCCHHHHHHHHHHHHhh
Q 001748 489 FD--QAALDFIAAKSNGSIRDAEMLLDQLSLL 518 (1018)
Q Consensus 489 Id--~eAL~~LA~~s~GnLR~Al~lLeqLsl~ 518 (1018)
.+ .+.++.|+..+.||+|-|++.|+.++..
T Consensus 239 ~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~ 270 (519)
T PF03215_consen 239 VPDKQSVLDSIAESSNGDIRSAINNLQFWCLK 270 (519)
T ss_pred CCChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence 33 3458999999999999999999999873
No 117
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=2.6e-14 Score=176.80 Aligned_cols=220 Identities=15% Similarity=0.149 Sum_probs=162.8
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
...+|.++.||..+++++|+++.+..+...+..... +.+||+||||+|||++|+.+|+.+.......
T Consensus 168 ~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~-~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~------------ 234 (731)
T TIGR02639 168 YTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKK-NNPLLVGEPGVGKTAIAEGLALRIAEGKVPE------------ 234 (731)
T ss_pred HhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCC-CceEEECCCCCCHHHHHHHHHHHHHhCCCch------------
Confidence 346899999999999999999999999988877655 4569999999999999999999874221110
Q ss_pred eccCCCCcccccccc------cc--cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH---------HHHHHHHHHHh
Q 001748 373 FSSGRSRDVKEVDSV------RI--NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG---------ETWATVLNSLE 435 (1018)
Q Consensus 373 i~sG~~~DvieIdaa------s~--~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~---------~a~naLLk~LE 435 (1018)
...+ ..++.++.. .. ...+.++++++.+... ...|+||||+|.|.. ++.+.|+..|+
T Consensus 235 ~l~~--~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~ 308 (731)
T TIGR02639 235 NLKN--AKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE----PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS 308 (731)
T ss_pred hhcC--CeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc----CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh
Confidence 0000 112222211 11 1225677888776432 246999999998852 35677888887
Q ss_pred ccCCcEEEEEEecCCC-----cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH----hcCCCCHHHHHHHHHHcCC---
Q 001748 436 NISQHVVFVMITPELD-----KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE----EAINFDQAALDFIAAKSNG--- 503 (1018)
Q Consensus 436 epp~~vifILaTn~~~-----kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk----egI~Id~eAL~~LA~~s~G--- 503 (1018)
. +.+.+|.+||..+ .+++++.+||+.+.+++|+.++...+|+..... .++.++++++..++..+..
T Consensus 309 ~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 309 S--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred C--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 5 6788999988632 468999999999999999999999999977654 4678999999999988864
Q ss_pred ---CHHHHHHHHHHHHhh---------CCccCHHHHHHHhcc
Q 001748 504 ---SIRDAEMLLDQLSLL---------GKKITLSLAYELIGI 533 (1018)
Q Consensus 504 ---nLR~Al~lLeqLsl~---------g~~IT~edV~ellg~ 533 (1018)
-++.|+.+|+.+... ...||.++|.+++..
T Consensus 387 ~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 387 DRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAK 428 (731)
T ss_pred cccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHH
Confidence 278899999886532 124888888887654
No 118
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.57 E-value=1.2e-13 Score=163.12 Aligned_cols=209 Identities=15% Similarity=0.102 Sum_probs=148.5
Q ss_pred CCcccccCcHHHHHHHHHHHH--------cC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceec
Q 001748 304 NFFDELVGQNVVVRSLLSAIS--------RG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk--------~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~ 374 (1018)
.+|+++.|.+.+++.|..... .| ..+..+|||||||||||++|+++|++++..- ..+.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~-------------~~l~ 291 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL-------------LRLD 291 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE-------------EEEE
Confidence 479999999988887775321 12 4568899999999999999999999986320 1111
Q ss_pred cCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH------------HHHHHHHHHHhccCCcEE
Q 001748 375 SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG------------ETWATVLNSLENISQHVV 442 (1018)
Q Consensus 375 sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~------------~a~naLLk~LEepp~~vi 442 (1018)
.+.-+ ...-..+...++++++.+... .+.||+|||+|.+.. ..++.|+..|++....++
T Consensus 292 ~~~l~-----~~~vGese~~l~~~f~~A~~~----~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~ 362 (489)
T CHL00195 292 VGKLF-----GGIVGESESRMRQMIRIAEAL----SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF 362 (489)
T ss_pred hHHhc-----ccccChHHHHHHHHHHHHHhc----CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE
Confidence 01000 000111235677887766421 245999999997643 145667888888777888
Q ss_pred EEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 001748 443 FVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAIN-FDQAALDFIAAKSNG-SIRDAEMLLDQLSL 517 (1018)
Q Consensus 443 fILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~-Id~eAL~~LA~~s~G-nLR~Al~lLeqLsl 517 (1018)
+|.+||.++.+++++++ |+. .+.++.|+.++..++++..+.+.+.. ..+..+..|++.+.| +..++.+++..+..
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 88899999999999987 776 68899999999999999888875543 345567889999887 77777777666543
Q ss_pred ----hCCccCHHHHHHHhccC
Q 001748 518 ----LGKKITLSLAYELIGIV 534 (1018)
Q Consensus 518 ----~g~~IT~edV~ellg~v 534 (1018)
.++.+|.+++.+.+..+
T Consensus 443 ~A~~~~~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 443 IAFYEKREFTTDDILLALKQF 463 (489)
T ss_pred HHHHcCCCcCHHHHHHHHHhc
Confidence 25678888887766544
No 119
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=1.6e-14 Score=150.47 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=113.5
Q ss_pred ccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccE-----
Q 001748 389 INRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQK----- 463 (1018)
Q Consensus 389 ~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~----- 463 (1018)
..+++++|++++.+...|.. .+ +||+++|+|+..++|+|||+|||||.+++||++|+.+.++++||+|||+.
T Consensus 36 ~i~Vd~iReii~~~~~~~~~--~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~ 112 (206)
T PRK08485 36 EFKIEDAKEVIAEAYIAESE--EK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQ 112 (206)
T ss_pred CCCHHHHHHHHHHHhhCCCC--cE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccc
Confidence 46789999999999888753 34 56889999999999999999999999999999999999999999999996
Q ss_pred --------EEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 001748 464 --------YHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL 517 (1018)
Q Consensus 464 --------I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl 517 (1018)
++|.+++.+++..+|++ .+++++...+++++.|+..+.|.+|+++...++...
T Consensus 113 ~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~ 173 (206)
T PRK08485 113 KKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELE 173 (206)
T ss_pred cccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 77899999999999999 688899899999999999999999999888887543
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=1.2e-13 Score=172.92 Aligned_cols=207 Identities=16% Similarity=0.148 Sum_probs=153.4
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
...+|.++.||..+++++|+++.+..+...+..++.. ..+|+||||+|||++|+.+|+.+.......
T Consensus 173 ~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~-n~lLvG~pGvGKTal~~~La~~i~~~~v~~------------ 239 (852)
T TIGR03345 173 YTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQN-NPILTGEAGVGKTAVVEGLALRIAAGDVPP------------ 239 (852)
T ss_pred HhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcC-ceeEECCCCCCHHHHHHHHHHHHhhCCCCc------------
Confidence 3467899999999999999999999999888776654 568999999999999999999885321110
Q ss_pred eccCCCC---ccccccc-ccc--cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--------HHHHHHHHHHhccC
Q 001748 373 FSSGRSR---DVKEVDS-VRI--NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--------ETWATVLNSLENIS 438 (1018)
Q Consensus 373 i~sG~~~---DvieIda-as~--~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--------~a~naLLk~LEepp 438 (1018)
...+..+ ++-.+.+ ... ...+.++.+++.+... +...|+||||+|.|.. ++.|.|+..|+.
T Consensus 240 ~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~---~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-- 314 (852)
T TIGR03345 240 ALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS---PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-- 314 (852)
T ss_pred cccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc---CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--
Confidence 0111111 1111111 111 1125788888877432 3467999999999963 245567888876
Q ss_pred CcEEEEEEecCCC-----cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH----hcCCCCHHHHHHHHHHcCC------
Q 001748 439 QHVVFVMITPELD-----KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE----EAINFDQAALDFIAAKSNG------ 503 (1018)
Q Consensus 439 ~~vifILaTn~~~-----kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk----egI~Id~eAL~~LA~~s~G------ 503 (1018)
+.+.+|.+|+..+ .++++|.+||+.|.+++|+.++...+|+.+... .++.++++|+..++.++.+
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQ 394 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccccccc
Confidence 6888999998642 478999999999999999999999997666543 4688999999999999874
Q ss_pred CHHHHHHHHHHHHh
Q 001748 504 SIRDAEMLLDQLSL 517 (1018)
Q Consensus 504 nLR~Al~lLeqLsl 517 (1018)
-+..|+.+|+.++.
T Consensus 395 LPDKAIdlldea~a 408 (852)
T TIGR03345 395 LPDKAVSLLDTACA 408 (852)
T ss_pred CccHHHHHHHHHHH
Confidence 46789999998643
No 121
>CHL00176 ftsH cell division protein; Validated
Probab=99.53 E-value=2.5e-13 Score=164.87 Aligned_cols=206 Identities=22% Similarity=0.249 Sum_probs=147.0
Q ss_pred CCcccccCcHHHHHHHHHHHH---c--------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 304 NFFDELVGQNVVVRSLLSAIS---R--------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk---~--------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+|+|++|.+++++.|...+. . ...+..+||+||||||||++|+++|.+++.. ..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p--------------~i 245 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP--------------FF 245 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------ee
Confidence 489999999988887776642 1 2446789999999999999999999987532 11
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--------------HHHHHHHHHHhcc-
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--------------ETWATVLNSLENI- 437 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--------------~a~naLLk~LEep- 437 (1018)
..++..+ .+. ....+...++++++.+.. ..+.||||||+|.+.. ..++.||..++..
T Consensus 246 ~is~s~f--~~~--~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 246 SISGSEF--VEM--FVGVGAARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred eccHHHH--HHH--hhhhhHHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 1111111 110 001123567788877642 2245999999998842 2455666666643
Q ss_pred -CCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHHH
Q 001748 438 -SQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEMLL 512 (1018)
Q Consensus 438 -p~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~lL 512 (1018)
...+++|.+|+.++.+++++++ |+. .+.|..|+.++...+|+.+++...+ .++..+..||..+.| +.+++.+++
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHH
Confidence 3467889999999999999997 454 7999999999999999998877443 345678889999988 888888888
Q ss_pred HHHHhh-----CCccCHHHHHHHhc
Q 001748 513 DQLSLL-----GKKITLSLAYELIG 532 (1018)
Q Consensus 513 eqLsl~-----g~~IT~edV~ellg 532 (1018)
..+++. ...||.+++.+.+.
T Consensus 397 neAal~a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 397 NEAAILTARRKKATITMKEIDTAID 421 (638)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 876542 24588888887664
No 122
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.52 E-value=2.5e-13 Score=156.78 Aligned_cols=207 Identities=19% Similarity=0.179 Sum_probs=140.6
Q ss_pred CCcccccCcHHHHHHHHHHHHc------------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISR------------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~------------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
.+|++++|.+..++.|...+.. ...+..+|||||||||||++|+++|+.++.. .
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~--------------~ 193 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--------------F 193 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC--------------E
Confidence 4789999999999999887642 1456789999999999999999999988532 1
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccC-----------HHHHHHHHHHHhc---c
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLH-----------GETWATVLNSLEN---I 437 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls-----------~~a~naLLk~LEe---p 437 (1018)
..+.+..+.-.++ ......++.+++.+.. ..+.||||||+|.+. .+.+..|+.++.+ .
T Consensus 194 i~v~~~~l~~~~~----g~~~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 194 IRVVGSELVQKFI----GEGARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred EEeehHHHhHhhc----cchHHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 1111111100011 1122456667766542 224699999999983 2334445554432 2
Q ss_pred --CCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHH
Q 001748 438 --SQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEML 511 (1018)
Q Consensus 438 --p~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~l 511 (1018)
..++.+|++|+.++.+++++++ |+. .+.|++|+.++..++++.+++...+.- +..+..|+..+.| +.+++..+
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAI 344 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHH
Confidence 3478899999999999999986 776 799999999999999998876544431 2346778888877 66777777
Q ss_pred HHHHHhh-----CCccCHHHHHHHhcc
Q 001748 512 LDQLSLL-----GKKITLSLAYELIGI 533 (1018)
Q Consensus 512 LeqLsl~-----g~~IT~edV~ellg~ 533 (1018)
+..+... ...|+.+++.+.+..
T Consensus 345 ~~eA~~~a~~~~~~~i~~~d~~~A~~~ 371 (389)
T PRK03992 345 CTEAGMFAIRDDRTEVTMEDFLKAIEK 371 (389)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 7765432 235777777665543
No 123
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.52 E-value=2.5e-13 Score=156.89 Aligned_cols=205 Identities=19% Similarity=0.185 Sum_probs=141.9
Q ss_pred CCcccccCcHHHHHHHHHHHHc-----------C-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISR-----------G-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~-----------g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
.+|+||.|.+.+++.|++++.. | ..+..+|||||||||||++|+++|+.++.. .
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--------------f 207 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--------------F 207 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--------------E
Confidence 4899999999999999887742 1 346789999999999999999999987532 1
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH-----------H---HHHHHHHHHhcc
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG-----------E---TWATVLNSLENI 437 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~-----------~---a~naLLk~LEep 437 (1018)
....+..+...++ ..+...+++++..+.. ..+.||||||+|.+.. . ....|+..++..
T Consensus 208 i~i~~s~l~~k~~----ge~~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 208 IRVVGSEFVQKYL----GEGPRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred EEEehHHHHHHhc----chhHHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 1111111100011 1123456777766542 2346999999998742 1 234455555543
Q ss_pred --CCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHH
Q 001748 438 --SQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEML 511 (1018)
Q Consensus 438 --p~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~l 511 (1018)
..++++|++|+.++.+++++++ |+. .+.|+.|+.++...+++.+..+.++.- +-.+..++..+.| +..++.++
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCCHHHHHHH
Confidence 3478899999999999999987 666 699999999999999988887666542 2346677888876 77888888
Q ss_pred HHHHHhh-----CCccCHHHHHHHh
Q 001748 512 LDQLSLL-----GKKITLSLAYELI 531 (1018)
Q Consensus 512 LeqLsl~-----g~~IT~edV~ell 531 (1018)
+..+... ...|+.+++.+.+
T Consensus 359 ~~eA~~~A~r~~~~~i~~~df~~A~ 383 (398)
T PTZ00454 359 CQEAGMQAVRKNRYVILPKDFEKGY 383 (398)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHH
Confidence 7776542 2357777666654
No 124
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.50 E-value=2.9e-13 Score=167.70 Aligned_cols=191 Identities=18% Similarity=0.176 Sum_probs=136.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHc------------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 303 PNFFDELVGQNVVVRSLLSAISR------------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 303 P~tFddLVGqe~iv~~L~~aIk~------------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
..+|++++|++.+++.|.+.+.. .+.+..+|||||||||||++|+++|+++++.
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~-------------- 514 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN-------------- 514 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--------------
Confidence 35799999999999999887752 2456789999999999999999999987632
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH------------HHHHHHHHHHhc--
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG------------ETWATVLNSLEN-- 436 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~------------~a~naLLk~LEe-- 436 (1018)
.....+...--.++. .....+++++..+.. ..+.||||||+|.|.. ...+.||..|+.
T Consensus 515 fi~v~~~~l~~~~vG----ese~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 515 FIAVRGPEILSKWVG----ESEKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred EEEEehHHHhhcccC----cHHHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc
Confidence 111111111001111 123568888887753 2347999999998742 356778888874
Q ss_pred cCCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHHH
Q 001748 437 ISQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEMLL 512 (1018)
Q Consensus 437 pp~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~lL 512 (1018)
...++++|++||.++.+++++++ ||. .+.|+.|+.++..++++...++..+. ++..+..||+.+.| +..++.+++
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHH
Confidence 45688999999999999999996 887 78899999999988887665433332 23347889999887 556666666
Q ss_pred HHHH
Q 001748 513 DQLS 516 (1018)
Q Consensus 513 eqLs 516 (1018)
..++
T Consensus 666 ~~A~ 669 (733)
T TIGR01243 666 REAA 669 (733)
T ss_pred HHHH
Confidence 6554
No 125
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.1e-13 Score=157.14 Aligned_cols=184 Identities=24% Similarity=0.268 Sum_probs=137.3
Q ss_pred CcccccCcHHHHHHHHHHHHc----------C-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 305 FFDELVGQNVVVRSLLSAISR----------G-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~----------g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
.|.+|-|.+..+..|...+.. | +++..+|||||||||||.+|++||.+++-+-. -
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~--------------~ 253 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFL--------------S 253 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceE--------------e
Confidence 599999999999888876542 2 45678999999999999999999999863211 1
Q ss_pred ccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCHH-----------HHHHHHHHHhccC---
Q 001748 374 SSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHGE-----------TWATVLNSLENIS--- 438 (1018)
Q Consensus 374 ~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~~-----------a~naLLk~LEepp--- 438 (1018)
.++ +. .+.+.+..+.+.||++++++. +.| -|+||||+|.+++. ....||..|+++.
T Consensus 254 isA--pe--ivSGvSGESEkkiRelF~~A~~~aP-----civFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 254 ISA--PE--IVSGVSGESEKKIRELFDQAKSNAP-----CIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred ecc--hh--hhcccCcccHHHHHHHHHHHhccCC-----eEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 111 11 123334455688999999986 555 59999999999854 3556888888752
Q ss_pred ---CcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 001748 439 ---QHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLL 512 (1018)
Q Consensus 439 ---~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lL 512 (1018)
..|++|.+||.++.|+++|++ ||. .|-+.-|+..+..++|+.+|+...+.- +-.+..||+.+.|-+..-+..|
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMAL 403 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHH
Confidence 468999999999999999997 555 588899999999999999998655432 2235678999988665444444
No 126
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.49 E-value=4.3e-13 Score=156.32 Aligned_cols=213 Identities=18% Similarity=0.166 Sum_probs=142.1
Q ss_pred ccccCCCCcccccCcHHHHHHHHHHHHc------------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCC
Q 001748 298 SQKFRPNFFDELVGQNVVVRSLLSAISR------------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCG 365 (1018)
Q Consensus 298 ~eKyRP~tFddLVGqe~iv~~L~~aIk~------------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg 365 (1018)
.+++.+.+|+||.|.+..++.|.+++.. -..+.++|||||||||||++|+++|+.+...
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--------- 244 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--------- 244 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC---------
Confidence 4566668999999999999999988752 1355789999999999999999999987531
Q ss_pred CccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH-----------HHH---HHHH
Q 001748 366 LCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG-----------ETW---ATVL 431 (1018)
Q Consensus 366 ~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~-----------~a~---naLL 431 (1018)
.....+..+ +......+...+++++..+.. ..+.|+||||+|.+.. +.+ ..|+
T Consensus 245 -----fi~V~~seL----~~k~~Ge~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL 311 (438)
T PTZ00361 245 -----FLRVVGSEL----IQKYLGDGPKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELL 311 (438)
T ss_pred -----EEEEecchh----hhhhcchHHHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Confidence 011111111 000111123456777766542 2346999999998742 123 3344
Q ss_pred HHHhcc--CCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CH
Q 001748 432 NSLENI--SQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SI 505 (1018)
Q Consensus 432 k~LEep--p~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nL 505 (1018)
..++.. ..++.+|++|+.++.+++++++ |+. .|.|+.|+.++..++++....+..+.- +..+..++..+.| +.
T Consensus 312 ~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl~~la~~t~g~sg 390 (438)
T PTZ00361 312 NQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDLEEFIMAKDELSG 390 (438)
T ss_pred HHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCHHHHHHhcCCCCH
Confidence 445432 4578899999999999999986 665 799999999999999998776655431 2235566666654 66
Q ss_pred HHHHHHHHHHHh---h--CCccCHHHHHHHhcc
Q 001748 506 RDAEMLLDQLSL---L--GKKITLSLAYELIGI 533 (1018)
Q Consensus 506 R~Al~lLeqLsl---~--g~~IT~edV~ellg~ 533 (1018)
.++..++..+.. . ...||.+++.+.+..
T Consensus 391 AdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 391 ADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 666666655432 2 246788877765543
No 127
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.48 E-value=7.1e-13 Score=156.63 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=127.0
Q ss_pred cccccCCCCcccccCcHHHHHHHHHHHHc------------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCC
Q 001748 297 LSQKFRPNFFDELVGQNVVVRSLLSAISR------------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPC 364 (1018)
Q Consensus 297 L~eKyRP~tFddLVGqe~iv~~L~~aIk~------------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PC 364 (1018)
+.+++.+.+|++|.|.+..++.++.++.. -..+..+|||||||||||++|+++|+.+........
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~--- 248 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET--- 248 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc---
Confidence 45666678999999999999999988752 134678999999999999999999999853211000
Q ss_pred CCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH------------HHHHHHH
Q 001748 365 GLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE------------TWATVLN 432 (1018)
Q Consensus 365 g~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~------------a~naLLk 432 (1018)
....++.-..+.. + +..........++.+++.+......+.+.||||||+|.+... ..+.||.
T Consensus 249 -~~~~~fl~v~~~e--L--l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 249 -GDKSYFLNIKGPE--L--LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred -CCceeEEeccchh--h--cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 0000111111111 0 011111123456777776654333445679999999987421 3467888
Q ss_pred HHhccC--CcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCH
Q 001748 433 SLENIS--QHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQ 491 (1018)
Q Consensus 433 ~LEepp--~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~ 491 (1018)
.|+... .++++|++||.++.|+++|++ |+. .|.|+.|+.++..++++.++.. .+.+++
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~ 386 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDA 386 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchH
Confidence 887543 578899999999999999998 776 6999999999999999888753 445533
No 128
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.47 E-value=1.8e-12 Score=143.67 Aligned_cols=120 Identities=21% Similarity=0.243 Sum_probs=103.8
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecC------------CCcchHHHhcCccEEEeCCCChhHHHHHH
Q 001748 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPE------------LDKLPRSALSRSQKYHFPKIKDGDIASRL 478 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~------------~~kL~~tI~SRcq~I~F~~ls~eEI~~~L 478 (1018)
+.|+||||+|+|.-+.+..|-+.||+.-.. ++|++||. |+.++..++.|..++...|++.+++..+|
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 459999999999999999999999986443 57788774 56889999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHH----hh-CCccCHHHHHHHh
Q 001748 479 RRICVEEAINFDQAALDFIAAKSN-GSIRDAEMLLDQLS----LL-GKKITLSLAYELI 531 (1018)
Q Consensus 479 ~~iakkegI~Id~eAL~~LA~~s~-GnLR~Al~lLeqLs----l~-g~~IT~edV~ell 531 (1018)
+.+++.+++.++++|+++|+.... .++|.++++|.-.. .. ++.|..++|+++-
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 999999999999999999999875 59999999998542 22 4578999888764
No 129
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.45 E-value=1e-12 Score=148.08 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=127.8
Q ss_pred CCCCcccccC----cHHHHHHHHHHHHc-------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 302 RPNFFDELVG----QNVVVRSLLSAISR-------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 302 RP~tFddLVG----qe~iv~~L~~aIk~-------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
+-.+|++++| .+.....+.-.+.+ -++|..++||||||||||.+|+++|+++++.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~-------------- 175 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIE-------------- 175 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCC--------------
Confidence 3457888765 33333333322222 3677889999999999999999999999742
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCC-CCCCceEEEEeCccccCHH-----------H-HHHHHHHHhcc
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPP-FSSRFKIFIIDECQLLHGE-----------T-WATVLNSLENI 437 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P-~~g~~kVLIIDEaD~Ls~~-----------a-~naLLk~LEep 437 (1018)
...+++...- +.....+...+|+++..+.... ..+...||||||+|.+... . ...|+..++.|
T Consensus 176 ~i~vsa~eL~----sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p 251 (413)
T PLN00020 176 PIVMSAGELE----SENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNP 251 (413)
T ss_pred eEEEEHHHhh----cCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCC
Confidence 1122221111 1111233467999998775321 3345679999999987532 1 24677776543
Q ss_pred --------------CCcEEEEEEecCCCcchHHHhc--CccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHc
Q 001748 438 --------------SQHVVFVMITPELDKLPRSALS--RSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKS 501 (1018)
Q Consensus 438 --------------p~~vifILaTn~~~kL~~tI~S--Rcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s 501 (1018)
...+.+|.+||+++.|+++|++ |+..+ |..|+.++..++|+.++++.++ +.+.+..|+..+
T Consensus 252 ~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f 328 (413)
T PLN00020 252 TNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTF 328 (413)
T ss_pred ccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcC
Confidence 4568889999999999999999 88765 4578899999999999887655 577888899888
Q ss_pred CCCHHHHHH
Q 001748 502 NGSIRDAEM 510 (1018)
Q Consensus 502 ~GnLR~Al~ 510 (1018)
.|-.-+.-.
T Consensus 329 ~gq~~Df~G 337 (413)
T PLN00020 329 PGQPLDFFG 337 (413)
T ss_pred CCCCchhhh
Confidence 875433333
No 130
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.45 E-value=1.1e-12 Score=149.83 Aligned_cols=208 Identities=19% Similarity=0.184 Sum_probs=137.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcC------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccc
Q 001748 302 RPNFFDELVGQNVVVRSLLSAISRG------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369 (1018)
Q Consensus 302 RP~tFddLVGqe~iv~~L~~aIk~g------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~s 369 (1018)
...+|+++.|.+..++.|..++... ..+..+||+||||||||++|+++|+.+....
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~------------ 184 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF------------ 184 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE------------
Confidence 3458899999999999999887521 3467799999999999999999999875320
Q ss_pred cceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH-----------HHHHHHHHH---Hh
Q 001748 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG-----------ETWATVLNS---LE 435 (1018)
Q Consensus 370 c~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~---LE 435 (1018)
....+.. + .......+...++.+++.+.. ..+.||||||+|.+.. ..+..|..+ ++
T Consensus 185 --~~v~~~~--l--~~~~~g~~~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 185 --IRVVGSE--L--VRKYIGEGARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD 254 (364)
T ss_pred --EecchHH--H--HHHhhhHHHHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence 0011100 0 000001122345666655432 1245999999998842 233344444 44
Q ss_pred cc--CCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHH
Q 001748 436 NI--SQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAE 509 (1018)
Q Consensus 436 ep--p~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al 509 (1018)
.. ..++.+|++|+.++.+++++++ |+. .+.|+.|+.++..++++..+....+. ++..+..|++.+.| +.+++.
T Consensus 255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~ 333 (364)
T TIGR01242 255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLK 333 (364)
T ss_pred CCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHH
Confidence 32 3578899999999999999986 665 78999999999999998877554432 11246778888876 556666
Q ss_pred HHHHHHHhh-----CCccCHHHHHHHhc
Q 001748 510 MLLDQLSLL-----GKKITLSLAYELIG 532 (1018)
Q Consensus 510 ~lLeqLsl~-----g~~IT~edV~ellg 532 (1018)
.++..+... ...|+.+++.+.+.
T Consensus 334 ~l~~~A~~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 334 AICTEAGMFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 666654332 34688888777654
No 131
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.45 E-value=9.4e-13 Score=163.98 Aligned_cols=193 Identities=22% Similarity=0.341 Sum_probs=131.4
Q ss_pred Ccc-cccCcHHHHHHHHHHHHc----CC-CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC
Q 001748 305 FFD-ELVGQNVVVRSLLSAISR----GM-VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS 378 (1018)
Q Consensus 305 tFd-dLVGqe~iv~~L~~aIk~----gr-l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~ 378 (1018)
.|+ +++|++.+++.+.+.+.. +. ..+.++|+||||||||++|+++|+.++... ..+..+..
T Consensus 317 ~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~-------------~~i~~~~~ 383 (775)
T TIGR00763 317 ILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF-------------VRFSLGGV 383 (775)
T ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe-------------EEEeCCCc
Confidence 344 477999999998886542 21 235799999999999999999999986421 11111111
Q ss_pred Ccccccccccc----cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH----HHHHHHHHHhcc-------------
Q 001748 379 RDVKEVDSVRI----NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE----TWATVLNSLENI------------- 437 (1018)
Q Consensus 379 ~DvieIdaas~----~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~----a~naLLk~LEep------------- 437 (1018)
.+..++..... .....+.+.+..+. ....|++|||+|.+... ..++|+..|+..
T Consensus 384 ~~~~~i~g~~~~~~g~~~g~i~~~l~~~~-----~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~ 458 (775)
T TIGR00763 384 RDEAEIRGHRRTYVGAMPGRIIQGLKKAK-----TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVP 458 (775)
T ss_pred ccHHHHcCCCCceeCCCCchHHHHHHHhC-----cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCce
Confidence 12111111000 01123444444432 12249999999999753 357899888731
Q ss_pred --CCcEEEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHH-----HH-----hcCCCCHHHHHHHHHHcC--C
Q 001748 438 --SQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRIC-----VE-----EAINFDQAALDFIAAKSN--G 503 (1018)
Q Consensus 438 --p~~vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~ia-----kk-----egI~Id~eAL~~LA~~s~--G 503 (1018)
..+++||++||..+.++++|++||.++.|++++.++...+++..+ +. +++.++++++.+|++... .
T Consensus 459 ~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 459 FDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred eccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 146889999999999999999999999999999999888876654 22 245799999999998654 4
Q ss_pred CHHHHHHHHHHH
Q 001748 504 SIRDAEMLLDQL 515 (1018)
Q Consensus 504 nLR~Al~lLeqL 515 (1018)
.+|.+...++++
T Consensus 539 g~R~l~r~i~~~ 550 (775)
T TIGR00763 539 GVRNLERQIEKI 550 (775)
T ss_pred CChHHHHHHHHH
Confidence 677777777665
No 132
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.43 E-value=4.4e-12 Score=146.83 Aligned_cols=221 Identities=17% Similarity=0.195 Sum_probs=147.5
Q ss_pred CCCcccccccCCCCcccccCcHHHHHHHHHHHH-----cCCCC-cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCC
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAIS-----RGMVT-SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCG 365 (1018)
Q Consensus 292 ~~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk-----~grl~-~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg 365 (1018)
.....|++||+|.+.++|.-|+.-+..++.|++ ..++. +.+||+||+|+||||+++.++++++..-.+..+|-.
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~ 146 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN 146 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcc
Confidence 456789999999999999999999999999998 44544 579999999999999999999999876555443311
Q ss_pred CccccceeccCCCCcccccccccccchhHHHHHHHHhc-C-------CCCCCCceEEEEeCccccCHH-----HHHHHHH
Q 001748 366 LCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-L-------PPFSSRFKIFIIDECQLLHGE-----TWATVLN 432 (1018)
Q Consensus 366 ~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~-------~P~~g~~kVLIIDEaD~Ls~~-----a~naLLk 432 (1018)
|. .....|-+-......-......++.+...+. + .-..+.+++|+|||+-....- .++.|..
T Consensus 147 ----~~-~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~ 221 (634)
T KOG1970|consen 147 ----LK-EPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRL 221 (634)
T ss_pred ----cc-ccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHH
Confidence 00 0000000000000000111233344444331 1 112345679999998654322 3444555
Q ss_pred HHhccCCcEEEEEEecCC------C-cchHHH--hcCccEEEeCCCChhHHHHHHHHHHHHhcCCCC------HHHHHHH
Q 001748 433 SLENISQHVVFVMITPEL------D-KLPRSA--LSRSQKYHFPKIKDGDIASRLRRICVEEAINFD------QAALDFI 497 (1018)
Q Consensus 433 ~LEepp~~vifILaTn~~------~-kL~~tI--~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id------~eAL~~L 497 (1018)
+...+.-.++||++-... . .++..+ .-|...|.|.|+...-+.+.|..+|..++.... ...++.|
T Consensus 222 y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i 301 (634)
T KOG1970|consen 222 YVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELI 301 (634)
T ss_pred HHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHH
Confidence 555555556666663222 1 233333 446669999999999999999999999887666 5668899
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 001748 498 AAKSNGSIRDAEMLLDQLSL 517 (1018)
Q Consensus 498 A~~s~GnLR~Al~lLeqLsl 517 (1018)
+..++||+|.|++.|+-.+.
T Consensus 302 ~~~s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 302 CQGSGGDIRSAINSLQLSSS 321 (634)
T ss_pred HHhcCccHHHHHhHhhhhcc
Confidence 99999999999999998753
No 133
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.42 E-value=3.3e-12 Score=143.69 Aligned_cols=105 Identities=22% Similarity=0.272 Sum_probs=81.7
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecC------------CCcchHHHhcCccEEEeCCCChhHHHHHH
Q 001748 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPE------------LDKLPRSALSRSQKYHFPKIKDGDIASRL 478 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~------------~~kL~~tI~SRcq~I~F~~ls~eEI~~~L 478 (1018)
+.|+||||+|+|..+.+..|-+.||.+-. .++|++||. ++.+|..++.||..+...|++.+|+.++|
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~s-PiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELS-PIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCC-cEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 45999999999999999999999998644 367888874 45788899999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q 001748 479 RRICVEEAINFDQAALDFIAAKSN-GSIRDAEMLLDQLS 516 (1018)
Q Consensus 479 ~~iakkegI~Id~eAL~~LA~~s~-GnLR~Al~lLeqLs 516 (1018)
..+|+.|++.++++|+++|+.... .++|.|+++|.-+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 999999999999999999998764 69999999987543
No 134
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.7e-12 Score=151.17 Aligned_cols=177 Identities=20% Similarity=0.157 Sum_probs=129.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcC------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISRG------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~g------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
.+|+|+-+++++..+|..+|... ..|..+|||||||||||.+|+++|++.+.. +
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N--------------F 573 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN--------------F 573 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc--------------e
Confidence 48999999999999999988542 346779999999999999999999987521 1
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH-----------HHHHHHHHHHhccC--
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG-----------ETWATVLNSLENIS-- 438 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~LEepp-- 438 (1018)
.-..|...--.++. .+...||.++..+... .+-|||+||+|.|.+ ...|.||.-|+...
T Consensus 574 isVKGPELlNkYVG----ESErAVR~vFqRAR~s----aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 574 ISVKGPELLNKYVG----ESERAVRQVFQRARAS----APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred EeecCHHHHHHHhh----hHHHHHHHHHHHhhcC----CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 11222221112222 2235689999888632 245999999999964 26888998888653
Q ss_pred CcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHH-HHHHHHHcC
Q 001748 439 QHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAA-LDFIAAKSN 502 (1018)
Q Consensus 439 ~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eA-L~~LA~~s~ 502 (1018)
..+++|.+||.++.++++|++ |+. .+....|+.+|...+|+.+.+..+..+++++ ++.||+...
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTK 713 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhccc
Confidence 467888899999999999998 555 4555667788999999999886666555443 666776554
No 135
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.2e-12 Score=154.48 Aligned_cols=205 Identities=22% Similarity=0.218 Sum_probs=151.5
Q ss_pred CCcccccCcHHHHHHHHHHHH-----------cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 304 NFFDELVGQNVVVRSLLSAIS-----------RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk-----------~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
-+|.|+.|.+++++.|.+.+. .-++|+.+||+||||||||.||+++|.+.+-+ +.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP--------------F~ 373 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------------FF 373 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc--------------ee
Confidence 589999999999999887764 23788999999999999999999999987632 23
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCH---------------HHHHHHHHHHhc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHG---------------ETWATVLNSLEN 436 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~---------------~a~naLLk~LEe 436 (1018)
..+|.. ++|+-. ..+...+|+++..+. ..| .+|+|||+|.+.. ..+|.||--|+.
T Consensus 374 svSGSE--FvE~~~--g~~asrvr~lf~~ar~~aP-----~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 374 SVSGSE--FVEMFV--GVGASRVRDLFPLARKNAP-----SIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred eechHH--HHHHhc--ccchHHHHHHHHHhhccCC-----eEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 334433 333321 123467999998886 445 5999999997752 257778877775
Q ss_pred c--CCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHH
Q 001748 437 I--SQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEM 510 (1018)
Q Consensus 437 p--p~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~ 510 (1018)
. ...++|+.+||.++-+++++++ |+. .+....|+......+++.++.+-.+..++..+..||.++.| ...++.+
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n 524 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLAN 524 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHh
Confidence 4 3467888889999999999998 555 68888888888999998888777776566667779999988 4456666
Q ss_pred HHHHHHhh-----CCccCHHHHHHHh
Q 001748 511 LLDQLSLL-----GKKITLSLAYELI 531 (1018)
Q Consensus 511 lLeqLsl~-----g~~IT~edV~ell 531 (1018)
++..+++. ...|+..++..++
T Consensus 525 ~~neaa~~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 525 LCNEAALLAARKGLREIGTKDLEYAI 550 (774)
T ss_pred hhhHHHHHHHHhccCccchhhHHHHH
Confidence 66666543 3456666665554
No 136
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.7e-12 Score=142.43 Aligned_cols=190 Identities=21% Similarity=0.198 Sum_probs=129.0
Q ss_pred CCcccccCcHHHHHHHHHHHHc---------C--CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 304 NFFDELVGQNVVVRSLLSAISR---------G--MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~---------g--rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
..|+||.|..++++.|++++-- | ++-.++|++||||||||.||+++|.+.+- .++
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t--------------TFF 274 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT--------------TFF 274 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC--------------eEE
Confidence 3689999999999999998742 1 33467999999999999999999987641 111
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCHH------------HHHHHHHHHhccC-
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHGE------------TWATVLNSLENIS- 438 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~~------------a~naLLk~LEepp- 438 (1018)
-++... .....+..+..-+|-|++-+. ++|. +|||||||.|... .-+.||-.|+...
T Consensus 275 NVSsst----ltSKwRGeSEKlvRlLFemARfyAPS-----tIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~ 345 (491)
T KOG0738|consen 275 NVSSST----LTSKWRGESEKLVRLLFEMARFYAPS-----TIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQG 345 (491)
T ss_pred Eechhh----hhhhhccchHHHHHHHHHHHHHhCCc-----eeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccc
Confidence 111111 111222334466888888877 6664 9999999998532 4567887777543
Q ss_pred ----CcEEEEEE-ecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHH
Q 001748 439 ----QHVVFVMI-TPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEML 511 (1018)
Q Consensus 439 ----~~vifILa-Tn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~l 511 (1018)
..++|||+ ||-+..|++++++|+. +|.++-|+.+.....|+..+ ..-...++-.++.|++.++| +-.++.++
T Consensus 346 t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l-~~~~~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 346 TLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILL-RSVELDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred ccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhh-ccccCCCCccHHHHHHHhcCCChHHHHHH
Confidence 35677777 5556799999999999 56666666665555555444 33333455567888998887 55666666
Q ss_pred HHHHHh
Q 001748 512 LDQLSL 517 (1018)
Q Consensus 512 LeqLsl 517 (1018)
+..+++
T Consensus 425 CreAsm 430 (491)
T KOG0738|consen 425 CREASM 430 (491)
T ss_pred HHHHHH
Confidence 666544
No 137
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.39 E-value=1.2e-11 Score=134.33 Aligned_cols=228 Identities=17% Similarity=0.178 Sum_probs=140.6
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceec
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~ 374 (1018)
.||...-.|..|-.=.++..+...+...+..+ .+.++|+||+|+|||++++.+++.+.+.... .|..+.
T Consensus 11 ~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~---------~~~~~~ 79 (269)
T TIGR03015 11 KPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQR--EGFILITGEVGAGKTTLIRNLLKRLDQERVV---------AAKLVN 79 (269)
T ss_pred CCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE---------EeeeeC
Confidence 34444444443333345566777777766644 4679999999999999999999988632110 000000
Q ss_pred cCCC-Cccc-c------cccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc--CCc-EEE
Q 001748 375 SGRS-RDVK-E------VDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI--SQH-VVF 443 (1018)
Q Consensus 375 sG~~-~Dvi-e------Idaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep--p~~-vif 443 (1018)
.... .++. . +........+.++.+.+.+......++..|+||||+|.+....++.|....+.. ... +.+
T Consensus 80 ~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~v 159 (269)
T TIGR03015 80 TRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQI 159 (269)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEE
Confidence 0000 0000 0 000111111223333332222223455679999999999988777665443321 122 233
Q ss_pred EEEecCCC---c----chHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCHHHHHHH
Q 001748 444 VMITPELD---K----LPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEA----INFDQAALDFIAAKSNGSIRDAEML 511 (1018)
Q Consensus 444 ILaTn~~~---k----L~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkeg----I~Id~eAL~~LA~~s~GnLR~Al~l 511 (1018)
|++. .+. . -...+.+|+. .+.+++++.+++..++...+...| ..+++++++.|++.++|++|.+..+
T Consensus 160 vl~g-~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l 238 (269)
T TIGR03015 160 FLVG-QPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINIL 238 (269)
T ss_pred EEcC-CHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHH
Confidence 4443 322 1 1345777744 789999999999999999888655 4689999999999999999998888
Q ss_pred HHHHHhh-----CCccCHHHHHHHhccC
Q 001748 512 LDQLSLL-----GKKITLSLAYELIGIV 534 (1018)
Q Consensus 512 LeqLsl~-----g~~IT~edV~ellg~v 534 (1018)
++.+... .+.||.++|++++...
T Consensus 239 ~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 239 CDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 8887432 4679999999887653
No 138
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.3e-11 Score=137.10 Aligned_cols=238 Identities=20% Similarity=0.210 Sum_probs=150.2
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHH---cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAIS---RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk---~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
..+.+.|-|.. +.+.+..+.++...+. .|..|..+++||++|||||.+++.+++++.-...... ...-.|.
T Consensus 8 ~vl~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~---~~yINc~ 81 (366)
T COG1474 8 DVLLEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE---VVYINCL 81 (366)
T ss_pred cccCCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc---eEEEeee
Confidence 34555666644 7888888877776554 4555666999999999999999999999864322110 0001111
Q ss_pred eeccCCCC------cccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHH---HHHHhccCCcEE
Q 001748 372 LFSSGRSR------DVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATV---LNSLENISQHVV 442 (1018)
Q Consensus 372 ~i~sG~~~------DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naL---Lk~LEepp~~vi 442 (1018)
.+..-... .+..+...+....+-...+.+.+. ..+..-|+++||+|.|.....+.| ++.-++....+.
T Consensus 82 ~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~---~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~ 158 (366)
T COG1474 82 ELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS---KKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVS 158 (366)
T ss_pred eCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH---hcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEE
Confidence 11100000 000000000111122222322221 134566999999999987643444 444445544567
Q ss_pred EEEEecCCC---cchHHHhcCcc--EEEeCCCChhHHHHHHHHHHHH--hcCCCCHHHHHHHHHH---cCCCHHHHHHHH
Q 001748 443 FVMITPELD---KLPRSALSRSQ--KYHFPKIKDGDIASRLRRICVE--EAINFDQAALDFIAAK---SNGSIRDAEMLL 512 (1018)
Q Consensus 443 fILaTn~~~---kL~~tI~SRcq--~I~F~~ls~eEI~~~L~~iakk--egI~Id~eAL~~LA~~---s~GnLR~Al~lL 512 (1018)
+|+++++.+ .+.+.+.|++. .+.|+|++.+|+..+|..+++. ..-.+++++++++|.. .+||.|.|+.+|
T Consensus 159 vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred EEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 888888764 67888999877 6789999999999999999874 2345788888887754 457999999999
Q ss_pred HHHHhh-----CCccCHHHHHHHhccCChhHHHH
Q 001748 513 DQLSLL-----GKKITLSLAYELIGIVSDDELLD 541 (1018)
Q Consensus 513 eqLsl~-----g~~IT~edV~ellg~v~ee~If~ 541 (1018)
..+... ...++.++|...........+.+
T Consensus 239 r~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~ 272 (366)
T COG1474 239 RRAGEIAEREGSRKVSEDHVREAQEEIERDVLEE 272 (366)
T ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHH
Confidence 988543 45799999988854444333333
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.37 E-value=1.1e-11 Score=155.54 Aligned_cols=199 Identities=16% Similarity=0.214 Sum_probs=133.2
Q ss_pred ccccCcHHHHHHHHHHHHcC--------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC
Q 001748 307 DELVGQNVVVRSLLSAISRG--------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS 378 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~g--------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~ 378 (1018)
+.++||++++..+.+++... ++.+.+||+||+|+|||++|++||+.+.+.. .++..+..+.. ...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~----~~~~~~d~s~~--~~~~ 582 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE----DAMIRLDMSEY--MEKH 582 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc----cceEEEEchhc--cccc
Confidence 55789999999999998743 2335799999999999999999999986531 11111111100 0001
Q ss_pred Ccccccc-cccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEEEE
Q 001748 379 RDVKEVD-SVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFVMI 446 (1018)
Q Consensus 379 ~DvieId-aas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifILa 446 (1018)
.....+. +.+..+.+....+.+.+...| +.||+|||+|.+.+++++.|+++||+. -.+++||++
T Consensus 583 ~~~~l~g~~~gyvg~~~~~~l~~~~~~~p----~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 583 TVSKLIGSPPGYVGYNEGGQLTEAVRKKP----YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred cHHHhcCCCCcccCcCccchHHHHHHhCC----CeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 0000111 112223333444555555545 589999999999999999999999973 357889998
Q ss_pred ecCCC-------------------------------------cchHHHhcCc-cEEEeCCCChhHHHHHHHHHHHH----
Q 001748 447 TPELD-------------------------------------KLPRSALSRS-QKYHFPKIKDGDIASRLRRICVE---- 484 (1018)
Q Consensus 447 Tn~~~-------------------------------------kL~~tI~SRc-q~I~F~~ls~eEI~~~L~~iakk---- 484 (1018)
+|... .+.|.+++|+ .++.|.+++.+++.+++...+.+
T Consensus 659 sn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~r 738 (821)
T CHL00095 659 SNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKR 738 (821)
T ss_pred CCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 76321 0235688899 58999999999999887665543
Q ss_pred ---hc--CCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Q 001748 485 ---EA--INFDQAALDFIAAKSN---GSIRDAEMLLDQL 515 (1018)
Q Consensus 485 ---eg--I~Id~eAL~~LA~~s~---GnLR~Al~lLeqL 515 (1018)
.| +.+++++.++|+...- -..|-+...+++.
T Consensus 739 l~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~ 777 (821)
T CHL00095 739 LNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRL 777 (821)
T ss_pred HHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 23 5689999999998742 2456665555553
No 140
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.3e-11 Score=146.43 Aligned_cols=207 Identities=20% Similarity=0.203 Sum_probs=149.2
Q ss_pred CCcccccCcHHHHHHHHHHHHc------------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISR------------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~------------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
.+|+++.|.+.+...++..+.. -+.+..+|||||||||||++|+++|..++.. +
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~--------------f 304 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR--------------F 304 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCe--------------E
Confidence 4789999988888888877642 2445689999999999999999999976532 1
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCH-----------HHHHHHHHHHh--cc
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHG-----------ETWATVLNSLE--NI 437 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~LE--ep 437 (1018)
....+.. .++..-......|++++..+. ..| .||||||+|.+.. .+.+.||..++ +.
T Consensus 305 i~v~~~~----l~sk~vGesek~ir~~F~~A~~~~p-----~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 305 ISVKGSE----LLSKWVGESEKNIRELFEKARKLAP-----SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK 375 (494)
T ss_pred EEeeCHH----HhccccchHHHHHHHHHHHHHcCCC-----cEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc
Confidence 1111111 111111233467999998886 344 5999999998752 36788888886 45
Q ss_pred CCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHcCC-CHHHHHHHH
Q 001748 438 SQHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAIN-FDQAALDFIAAKSNG-SIRDAEMLL 512 (1018)
Q Consensus 438 p~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~-Id~eAL~~LA~~s~G-nLR~Al~lL 512 (1018)
..++++|.+||.++.+++++++ |+. .+.|++++..+..++++......+.. .++..++.+++.+.| ...++..++
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 5678888999999999999999 988 78899999999999999888766664 345567778887776 666666666
Q ss_pred HHHHhh------CCccCHHHHHHHhcc
Q 001748 513 DQLSLL------GKKITLSLAYELIGI 533 (1018)
Q Consensus 513 eqLsl~------g~~IT~edV~ellg~ 533 (1018)
..+... ...||.+++.+.+..
T Consensus 456 ~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 456 REAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 665432 235676666665544
No 141
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=99.36 E-value=7.9e-12 Score=124.29 Aligned_cols=126 Identities=30% Similarity=0.444 Sum_probs=110.3
Q ss_pred cCHHHHHHHhccCChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchh------HHH
Q 001748 522 ITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCS------EAR 595 (1018)
Q Consensus 522 IT~edV~ellg~v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~------~i~ 595 (1018)
||.++|.+++|.++.+.++++++++.++|..+++..+++++..|.+|..++..|..++|+++.++...+.. ...
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999988765311 223
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccCCC
Q 001748 596 KNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 596 ~~~l~r~a~~~s~~~L~~aL~iLseae~qLK~s~n~rl~LE~lLlkL~~~~~ 647 (1018)
...+.++++.++.+.|.++++.+.+++.++|++.+|++++|++++++|.+.+
T Consensus 81 ~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~~~ 132 (143)
T PF12169_consen 81 EEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQLKS 132 (143)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Confidence 4567778899999999999999999999999999999999999999998763
No 142
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.3e-11 Score=146.87 Aligned_cols=183 Identities=23% Similarity=0.213 Sum_probs=125.6
Q ss_pred ccCCCCcccccCcHHHHHHHHHHHHc----------C-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 001748 300 KFRPNFFDELVGQNVVVRSLLSAISR----------G-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCR 368 (1018)
Q Consensus 300 KyRP~tFddLVGqe~iv~~L~~aIk~----------g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~ 368 (1018)
|..-.+|+|+-|-++++..+...|.- | +....+|||||||||||.+|+++|.++.
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------------- 730 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------------- 730 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------------
Confidence 44335899999999999999988763 2 2246799999999999999999998764
Q ss_pred ccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-------------HHHHHHHHHh
Q 001748 369 ECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-------------TWATVLNSLE 435 (1018)
Q Consensus 369 sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-------------a~naLLk~LE 435 (1018)
.-+.-..|...--.++.. +.+++|++++.++.+ .+-|||+||+|.|.+. ....||.-|+
T Consensus 731 L~FlSVKGPELLNMYVGq----SE~NVR~VFerAR~A----~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD 802 (953)
T KOG0736|consen 731 LNFLSVKGPELLNMYVGQ----SEENVREVFERARSA----APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD 802 (953)
T ss_pred eeEEeecCHHHHHHHhcc----hHHHHHHHHHHhhcc----CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh
Confidence 222333343322223332 347899999998732 3469999999999753 5677888887
Q ss_pred ccC----CcEEEEEEecCCCcchHHHhc--CccE-EEeCCCChhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCH
Q 001748 436 NIS----QHVVFVMITPELDKLPRSALS--RSQK-YHFPKIKDGD-IASRLRRICVEEAINFDQAALDFIAAKSNGSI 505 (1018)
Q Consensus 436 epp----~~vifILaTn~~~kL~~tI~S--Rcq~-I~F~~ls~eE-I~~~L~~iakkegI~Id~eAL~~LA~~s~GnL 505 (1018)
... ..+.+|.+||.|+-|+|++++ ||.. +...+.+.++ -..+|+..-++..++ ++-.+..||+.+.-++
T Consensus 803 gls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~ 879 (953)
T KOG0736|consen 803 GLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNM 879 (953)
T ss_pred cccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCC
Confidence 543 477888899999999999998 6775 4444444444 444555555544432 1223667888776443
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.35 E-value=1.2e-11 Score=153.46 Aligned_cols=196 Identities=18% Similarity=0.287 Sum_probs=132.5
Q ss_pred ccccCcHHHHHHHHHHHHcC--------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC
Q 001748 307 DELVGQNVVVRSLLSAISRG--------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS 378 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~g--------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~ 378 (1018)
..++||+++++.+.+++... ++.+++||+||+|+|||++|++||+.+++.-..-. |.. +. ..+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d--~se------~~-~~~ 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFD--MSE------YM-EKH 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEe--Cch------hh-hcc
Confidence 34789999999999998742 34457999999999999999999999864211000 000 00 000
Q ss_pred Ccccccc-cccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEEEE
Q 001748 379 RDVKEVD-SVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFVMI 446 (1018)
Q Consensus 379 ~DvieId-aas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifILa 446 (1018)
.....+. ..+..+.+....+.+.+...| +.||+|||++.+.++.++.|+++|++- -.+++||++
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~~~p----~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVRKHP----HCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHHhCC----CeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 0001111 112223344444555554444 589999999999999999999999863 235678887
Q ss_pred ecCCC-------------------------cchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHH-------hc--CCCCH
Q 001748 447 TPELD-------------------------KLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVE-------EA--INFDQ 491 (1018)
Q Consensus 447 Tn~~~-------------------------kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakk-------eg--I~Id~ 491 (1018)
+|-.. .+.|.++.|+. ++.|.+++.+++.++++..+.+ .| +.+++
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~ 680 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTD 680 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCH
Confidence 75421 24577888996 8999999999999987776653 22 57899
Q ss_pred HHHHHHHHHcC---CCHHHHHHHHHHH
Q 001748 492 AALDFIAAKSN---GSIRDAEMLLDQL 515 (1018)
Q Consensus 492 eAL~~LA~~s~---GnLR~Al~lLeqL 515 (1018)
+++++|+...- -..|.+...+++.
T Consensus 681 ~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 681 DAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred HHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 99999998642 3456666666553
No 144
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.34 E-value=4.8e-11 Score=135.07 Aligned_cols=226 Identities=20% Similarity=0.199 Sum_probs=137.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHH-cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcc-----ccceecc
Q 001748 302 RPNFFDELVGQNVVVRSLLSAIS-RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCR-----ECALFSS 375 (1018)
Q Consensus 302 RP~tFddLVGqe~iv~~L~~aIk-~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~-----sc~~i~s 375 (1018)
.|..|.+++||+++++.|.-++- .| .+++||+|+||+|||++|++|++.+.+.......||...+ .+... .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~--~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~-~ 79 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPG--IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHV-S 79 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccC--CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccc-c
Confidence 36789999999999998885443 43 2579999999999999999999999776655554544332 11000 0
Q ss_pred CC-----CCccccccc----ccccchhHHHHHHHH----hcCCCC-CCCceEEEEeCccccCHHHHHHHHHHHhccC---
Q 001748 376 GR-----SRDVKEVDS----VRINRSDRVGSLMKS----AFLPPF-SSRFKIFIIDECQLLHGETWATVLNSLENIS--- 438 (1018)
Q Consensus 376 G~-----~~DvieIda----as~~~vd~IReLie~----a~~~P~-~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp--- 438 (1018)
+. ...+..+.. ....|.-.+..-+.. ....+. .....+++|||++.+....+++|+..|++..
T Consensus 80 ~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v 159 (334)
T PRK13407 80 STTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVV 159 (334)
T ss_pred CCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEE
Confidence 00 001111111 111121122222111 111122 2445799999999999999999999998642
Q ss_pred ----------CcEEEEEEecCC-C-cchHHHhcCcc-EEEeCCCCh-hHHHHHHHHHHH---------------------
Q 001748 439 ----------QHVVFVMITPEL-D-KLPRSALSRSQ-KYHFPKIKD-GDIASRLRRICV--------------------- 483 (1018)
Q Consensus 439 ----------~~vifILaTn~~-~-kL~~tI~SRcq-~I~F~~ls~-eEI~~~L~~iak--------------------- 483 (1018)
... ++++|.++ + .+++++..||. .+.+.++.. ++-.++|.....
T Consensus 160 ~r~G~~~~~p~rf-iviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (334)
T PRK13407 160 EREGLSIRHPARF-VLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRG 238 (334)
T ss_pred EECCeEEecCCCE-EEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHH
Confidence 223 33334333 2 58899999987 577766655 443444433111
Q ss_pred --------HhcCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHH---hh-C-CccCHHHHHHHh
Q 001748 484 --------EEAINFDQAALDFIAAKSN----GSIRDAEMLLDQLS---LL-G-KKITLSLAYELI 531 (1018)
Q Consensus 484 --------kegI~Id~eAL~~LA~~s~----GnLR~Al~lLeqLs---l~-g-~~IT~edV~ell 531 (1018)
-..+.++++.+++|++.+. .++|..+.++..+. .. | ..|+.+||+++.
T Consensus 239 ~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~ 303 (334)
T PRK13407 239 RILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVA 303 (334)
T ss_pred HHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHH
Confidence 1246788888888776552 36777777666542 22 3 468999887765
No 145
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.33 E-value=3.3e-11 Score=147.16 Aligned_cols=223 Identities=20% Similarity=0.250 Sum_probs=143.0
Q ss_pred cccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHH-----------hccCCCCCCCCCCccccceec
Q 001748 306 FDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL-----------NCLSLEDQKPCGLCRECALFS 374 (1018)
Q Consensus 306 FddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL-----------~c~~~~~~~PCg~C~sc~~i~ 374 (1018)
|.+|+||+.++..|..++..+++ +.|||.|++|||||++|++|++.+ +|. ...||+.|..|..+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~-g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~---p~~~~~~~~~~~~~~ 78 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRI-GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCD---PDDPEEWCEECRRKY 78 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCC-CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCC---CCCccccChhhhhcc
Confidence 78999999999999888887766 459999999999999999999998 442 456999999999987
Q ss_pred cCCCC---ccccccccc----ccchhHHHHHHHHhc--CCC---CCCCceEEEEeCccccCHHHHHHHHHHHhcc-----
Q 001748 375 SGRSR---DVKEVDSVR----INRSDRVGSLMKSAF--LPP---FSSRFKIFIIDECQLLHGETWATVLNSLENI----- 437 (1018)
Q Consensus 375 sG~~~---DvieIdaas----~~~vd~IReLie~a~--~~P---~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep----- 437 (1018)
.+.+. .++.+.... ..|..++...+..-. ..+ ..+...|++|||++.|....++.|+..|++.
T Consensus 79 ~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 79 RPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred cccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 66442 233322111 112122222222111 111 1235679999999999999999999999863
Q ss_pred --------CCcEEEEEEecCC-CcchHHHhcCcc-EEEeCCCCh-hHHHHHHHHHHH-----------------------
Q 001748 438 --------SQHVVFVMITPEL-DKLPRSALSRSQ-KYHFPKIKD-GDIASRLRRICV----------------------- 483 (1018)
Q Consensus 438 --------p~~vifILaTn~~-~kL~~tI~SRcq-~I~F~~ls~-eEI~~~L~~iak----------------------- 483 (1018)
+..+.+|.+++-. ..+.++|..|+. .+.+..+.. ++..+++.....
T Consensus 159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i 238 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI 238 (633)
T ss_pred ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence 2234455544422 257899999997 466665543 333333322110
Q ss_pred ------HhcCCCCHHHHHHHHHHcC--C--CHHHHHHHHHHH---Hhh-C-CccCHHHHHHHhc
Q 001748 484 ------EEAINFDQAALDFIAAKSN--G--SIRDAEMLLDQL---SLL-G-KKITLSLAYELIG 532 (1018)
Q Consensus 484 ------kegI~Id~eAL~~LA~~s~--G--nLR~Al~lLeqL---sl~-g-~~IT~edV~ellg 532 (1018)
...+.++++++++|+..+. | ++|..+.++.-+ +.+ + ..|+.+||++++.
T Consensus 239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~ 302 (633)
T TIGR02442 239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAE 302 (633)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 0246778888888777652 1 466666555543 222 2 4677777776553
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.33 E-value=9.9e-12 Score=156.30 Aligned_cols=205 Identities=18% Similarity=0.175 Sum_probs=149.6
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
...+|.++.||..++.++|+++.++.+...+.+... +..+|+||||+|||++++.||..+.... .|.
T Consensus 159 ~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~-~n~lL~G~pGvGKT~l~~~la~~i~~~~----~p~-------- 225 (852)
T TIGR03346 159 YARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTK-NNPVLIGEPGVGKTAIVEGLAQRIVNGD----VPE-------- 225 (852)
T ss_pred HhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCC-CceEEEcCCCCCHHHHHHHHHHHHhccC----Cch--------
Confidence 346799999999999999999999999998877654 5568899999999999999999874211 110
Q ss_pred eccCCCCccccccc------ccc--cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--------HHHHHHHHHHhc
Q 001748 373 FSSGRSRDVKEVDS------VRI--NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--------ETWATVLNSLEN 436 (1018)
Q Consensus 373 i~sG~~~DvieIda------as~--~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--------~a~naLLk~LEe 436 (1018)
...+ ..++.++. ... .....++.+++.+... ....||||||+|.|.. ++.+.|...++.
T Consensus 226 ~l~~--~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~---~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~ 300 (852)
T TIGR03346 226 SLKN--KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS---EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR 300 (852)
T ss_pred hhcC--CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc---CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc
Confidence 0001 11222211 111 1123567777766321 2457999999999863 355666666654
Q ss_pred cCCcEEEEEEecCCC-----cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH----hcCCCCHHHHHHHHHHcCC---C
Q 001748 437 ISQHVVFVMITPELD-----KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE----EAINFDQAALDFIAAKSNG---S 504 (1018)
Q Consensus 437 pp~~vifILaTn~~~-----kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk----egI~Id~eAL~~LA~~s~G---n 504 (1018)
..+.+|.+|+..+ .+++++.+||+.+.++.|+.++...+|+.+..+ .++.+.++++..++.++.+ +
T Consensus 301 --g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~ 378 (852)
T TIGR03346 301 --GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378 (852)
T ss_pred --CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence 6788888888653 468999999999999999999999998877655 4678899999998888763 3
Q ss_pred ---HHHHHHHHHHHHh
Q 001748 505 ---IRDAEMLLDQLSL 517 (1018)
Q Consensus 505 ---LR~Al~lLeqLsl 517 (1018)
+..|+.+|+.++.
T Consensus 379 r~lPdkAidlld~a~a 394 (852)
T TIGR03346 379 RFLPDKAIDLIDEAAA 394 (852)
T ss_pred cCCchHHHHHHHHHHH
Confidence 7899999998754
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.33 E-value=1.9e-11 Score=153.19 Aligned_cols=199 Identities=16% Similarity=0.255 Sum_probs=132.9
Q ss_pred ccccCcHHHHHHHHHHHHcC--------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC
Q 001748 307 DELVGQNVVVRSLLSAISRG--------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS 378 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~g--------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~ 378 (1018)
..++||++++..+.+++... ++-..+||+||+|+|||.+|+++|+.+..... . -.+-.+-.+.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~--~---~~~~dmse~~~~~~ 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQ--N---LITINMSEFQEAHT 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCc--c---eEEEeHHHhhhhhh
Confidence 45789999999999988631 22235999999999999999999999842100 0 00000000000000
Q ss_pred Cccccccc-ccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------CcEEEEEE
Q 001748 379 RDVKEVDS-VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QHVVFVMI 446 (1018)
Q Consensus 379 ~DvieIda-as~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~vifILa 446 (1018)
. -..+.+ .+..+.+.-..+.+.+...| +.||+|||++.+.++.++.|+.++++.. .+++||++
T Consensus 641 ~-~~l~g~~~gyvg~~~~g~L~~~v~~~p----~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 641 V-SRLKGSPPGYVGYGEGGVLTEAVRRKP----YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred h-ccccCCCCCcccccccchHHHHHHhCC----CcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 0 000000 01111111112333333333 5799999999999999999999998753 57889998
Q ss_pred ecCCC-----------------------------cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH-------h-c--C
Q 001748 447 TPELD-----------------------------KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE-------E-A--I 487 (1018)
Q Consensus 447 Tn~~~-----------------------------kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk-------e-g--I 487 (1018)
||-.. .+.|.+++|+.++.|.+++.+++.+++...+.+ . | +
T Consensus 716 SNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l 795 (852)
T TIGR03345 716 SNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAEL 795 (852)
T ss_pred CCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceE
Confidence 76310 255788999999999999999999887665432 1 4 4
Q ss_pred CCCHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 001748 488 NFDQAALDFIAAKSNG---SIRDAEMLLDQL 515 (1018)
Q Consensus 488 ~Id~eAL~~LA~~s~G---nLR~Al~lLeqL 515 (1018)
.++++++++|+....+ +.|.+.+.|++.
T Consensus 796 ~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 796 VYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred EECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 6899999999999876 789888888874
No 148
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.32 E-value=4.3e-11 Score=147.89 Aligned_cols=222 Identities=16% Similarity=0.161 Sum_probs=152.2
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccC-CCCCCCCCCcccccee
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS-LEDQKPCGLCRECALF 373 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~-~~~~~PCg~C~sc~~i 373 (1018)
..|.++-+-..++.++|.+..+..+...+.... .+.+||+||||+|||++|+.+|..+.... +... ..|..+
T Consensus 174 ~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~-~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l------~~~~~~ 246 (758)
T PRK11034 174 TNLNQLARVGGIDPLIGREKELERAIQVLCRRR-KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM------ADCTIY 246 (758)
T ss_pred HhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccC-CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchh------cCCeEE
Confidence 446666666788999999999999999888754 45678999999999999999998763221 1000 011111
Q ss_pred ccCCCCccccc-ccccc--cchhHHHHHHHHhcCCCCCCCceEEEEeCccccC---------HHHHHHHHHHHhccCCcE
Q 001748 374 SSGRSRDVKEV-DSVRI--NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLH---------GETWATVLNSLENISQHV 441 (1018)
Q Consensus 374 ~sG~~~DvieI-daas~--~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls---------~~a~naLLk~LEepp~~v 441 (1018)
. .+...+ ..... .....++.+++.+.. ....||||||+|.|. .++.|.|..+++. ..+
T Consensus 247 ~----l~~~~llaG~~~~Ge~e~rl~~l~~~l~~----~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i 316 (758)
T PRK11034 247 S----LDIGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKI 316 (758)
T ss_pred e----ccHHHHhcccchhhhHHHHHHHHHHHHHh----cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCe
Confidence 0 000001 01111 112456666666542 234599999999883 2344556666665 578
Q ss_pred EEEEEecCCC-----cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH----hcCCCCHHHHHHHHHHcCC------CHH
Q 001748 442 VFVMITPELD-----KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE----EAINFDQAALDFIAAKSNG------SIR 506 (1018)
Q Consensus 442 ifILaTn~~~-----kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk----egI~Id~eAL~~LA~~s~G------nLR 506 (1018)
.+|.+|+..+ ..+++|.+||+.+.+++|+.++...+|+.+..+ .++.++++|+..++..+.. -+.
T Consensus 317 ~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 317 RVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred EEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChH
Confidence 8888888653 468999999999999999999999998876543 5788999999988876653 456
Q ss_pred HHHHHHHHHHhh---------CCccCHHHHHHHhcc
Q 001748 507 DAEMLLDQLSLL---------GKKITLSLAYELIGI 533 (1018)
Q Consensus 507 ~Al~lLeqLsl~---------g~~IT~edV~ellg~ 533 (1018)
.|+.+|+.++.. ...|+.++|.+++..
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHH
Confidence 999999988642 124777777777643
No 149
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.32 E-value=2e-11 Score=156.62 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=130.6
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC----CCcccccc-----------------
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR----SRDVKEVD----------------- 385 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~----~~DvieId----------------- 385 (1018)
.++.++||+||||||||.+|+++|.+.+.+-..-. .-.+..+. ..+.+.++
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsIS--------gs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVF--------LNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEE--------HHHHhhcccccccccccccccccccccccccccccch
Confidence 56789999999999999999999998764321100 00000000 00000000
Q ss_pred -------c---ccccchh--HHHHHHHHhc-CCCCCCCceEEEEeCccccCHH-----HHHHHHHHHhcc-----CCcEE
Q 001748 386 -------S---VRINRSD--RVGSLMKSAF-LPPFSSRFKIFIIDECQLLHGE-----TWATVLNSLENI-----SQHVV 442 (1018)
Q Consensus 386 -------a---as~~~vd--~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~~-----a~naLLk~LEep-----p~~vi 442 (1018)
. ....++. .++.+++.|. .+| .||+|||+|.+... ..+.|+..|+.. ...++
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SP-----CIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VI 1774 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSP-----CIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNIL 1774 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCC-----eEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEE
Confidence 0 0011222 3788888886 444 59999999999754 367788888743 34688
Q ss_pred EEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHH--HHHHHHHHcCC-CHHHHHHHHHHHH
Q 001748 443 FVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQA--ALDFIAAKSNG-SIRDAEMLLDQLS 516 (1018)
Q Consensus 443 fILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~e--AL~~LA~~s~G-nLR~Al~lLeqLs 516 (1018)
+|.+|+.++.|+|+|++ |+. .|.++.|+..+..+++.......|+.++++ .++.+|+.+.| +.+++.+++..++
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 89999999999999998 776 688888887777777665555556666543 36889999988 7888888888875
Q ss_pred hh-----CCccCHHHHHHHhc
Q 001748 517 LL-----GKKITLSLAYELIG 532 (1018)
Q Consensus 517 l~-----g~~IT~edV~ellg 532 (1018)
+. ...|+.+++..++.
T Consensus 1855 liAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1855 SISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHHHHcCCCccCHHHHHHHHH
Confidence 43 24678888777654
No 150
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.1e-11 Score=147.56 Aligned_cols=204 Identities=24% Similarity=0.240 Sum_probs=147.8
Q ss_pred CCcccccCcHHHHHHHHHHHH-----------cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 304 NFFDELVGQNVVVRSLLSAIS-----------RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk-----------~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
.+|.|+.|.++.++.|.+.+. .+++|..+|++||||||||.+|+++|.+.+-+ ..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--------------Ff 212 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--------------FF 212 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--------------ce
Confidence 489999999999988887763 24788999999999999999999999887532 33
Q ss_pred eccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCH--------------HHHHHHHHHHhcc
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHG--------------ETWATVLNSLENI 437 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~--------------~a~naLLk~LEep 437 (1018)
..+|+.+ +++-. .-+...+|++++++. ..| -|++|||+|.... ...|.||-.++..
T Consensus 213 ~iSGS~F--VemfV--GvGAsRVRdLF~qAkk~aP-----~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 213 SISGSDF--VEMFV--GVGASRVRDLFEQAKKNAP-----CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred eccchhh--hhhhc--CCCcHHHHHHHHHhhccCC-----CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 4455443 33321 123467999999986 444 4999999998753 3678888888887
Q ss_pred C--CcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHH
Q 001748 438 S--QHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEML 511 (1018)
Q Consensus 438 p--~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~l 511 (1018)
. ..+++|.+||.++-++++|++ |+. .+....|+.....++|+-+++...+. +.-.+..||+.+.| ...++.++
T Consensus 284 ~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl 362 (596)
T COG0465 284 GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANL 362 (596)
T ss_pred CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhh
Confidence 6 467777889999999999987 454 57777787788888888666654444 22234558888877 55667777
Q ss_pred HHHHHhh-----CCccCHHHHHHHh
Q 001748 512 LDQLSLL-----GKKITLSLAYELI 531 (1018)
Q Consensus 512 LeqLsl~-----g~~IT~edV~ell 531 (1018)
+...+++ ...||..++.+.+
T Consensus 363 ~NEAal~aar~n~~~i~~~~i~ea~ 387 (596)
T COG0465 363 LNEAALLAARRNKKEITMRDIEEAI 387 (596)
T ss_pred HHHHHHHHHHhcCeeEeccchHHHH
Confidence 7665443 3467776665544
No 151
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.31 E-value=9.7e-11 Score=132.79 Aligned_cols=225 Identities=18% Similarity=0.196 Sum_probs=143.6
Q ss_pred cccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHH-------hccCC-CCCCCCCCccccceeccC-
Q 001748 306 FDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL-------NCLSL-EDQKPCGLCRECALFSSG- 376 (1018)
Q Consensus 306 FddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL-------~c~~~-~~~~PCg~C~sc~~i~sG- 376 (1018)
|..+|||++++..|.-++-...+ .+++|.|++|+|||+++++|+..+ +|... ....||..|..|+.....
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~-g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKI-GGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCC-CeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 88999999999988766655444 457899999999999999999988 44332 245799999999975321
Q ss_pred -C------CCccccccc----ccccchhHHHHHHHHh----cCCCC-CCCceEEEEeCccccCHHHHHHHHHHHhccC--
Q 001748 377 -R------SRDVKEVDS----VRINRSDRVGSLMKSA----FLPPF-SSRFKIFIIDECQLLHGETWATVLNSLENIS-- 438 (1018)
Q Consensus 377 -~------~~DvieIda----as~~~vd~IReLie~a----~~~P~-~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-- 438 (1018)
. ...+..+.. ....|.-++...+..- ...+. .+...+++|||++.|....+..|+..|++-.
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~ 161 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV 161 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 0 011112211 1112222232222111 11122 2456799999999999999999999997631
Q ss_pred -----------CcEEEEEEecCCC--cchHHHhcCcc-EEEeCCCCh-hHHHHHHHHHHH--------------------
Q 001748 439 -----------QHVVFVMITPELD--KLPRSALSRSQ-KYHFPKIKD-GDIASRLRRICV-------------------- 483 (1018)
Q Consensus 439 -----------~~vifILaTn~~~--kL~~tI~SRcq-~I~F~~ls~-eEI~~~L~~iak-------------------- 483 (1018)
.. +++++|.++. .+.+++..|+. .+.+..+.. ++..++|+....
T Consensus 162 v~r~G~~~~~~~r-~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~ 240 (337)
T TIGR02030 162 VEREGISIRHPAR-FVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQ 240 (337)
T ss_pred EEECCEEEEcCCC-EEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCH
Confidence 12 2333444332 68899999998 567777765 444444443110
Q ss_pred ---------HhcCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---Hhh-C-CccCHHHHHHHhc
Q 001748 484 ---------EEAINFDQAALDFIAAKS---NG-SIRDAEMLLDQL---SLL-G-KKITLSLAYELIG 532 (1018)
Q Consensus 484 ---------kegI~Id~eAL~~LA~~s---~G-nLR~Al~lLeqL---sl~-g-~~IT~edV~ellg 532 (1018)
-..+.++++++++|+..+ +. ++|..+.++..+ ++. + ..++.+||+.++.
T Consensus 241 ~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~ 307 (337)
T TIGR02030 241 AKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAV 307 (337)
T ss_pred HHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 134668888888877644 33 578777777654 222 3 4688888887654
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.30 E-value=2.7e-11 Score=149.63 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=127.6
Q ss_pred cccCcHHHHHHHHHHHHc--------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCC
Q 001748 308 ELVGQNVVVRSLLSAISR--------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSR 379 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aIk~--------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~ 379 (1018)
.++||+++++.|.++|.. +++...+||+||+|+|||.+|+++|+.+++.-..- .|..+.. .+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i--------d~se~~~-~~- 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF--------DMSEYME-RH- 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEe--------echhhcc-cc-
Confidence 378999999999999873 33445799999999999999999999985321100 0001100 00
Q ss_pred ccccc-cc-ccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEEEE
Q 001748 380 DVKEV-DS-VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFVMI 446 (1018)
Q Consensus 380 DvieI-da-as~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifILa 446 (1018)
.+..+ .. .+..+.+....+.+.+...| +.||+|||++.+.+++++.|+++|++- -.+++||++
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~L~~~v~~~p----~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~T 604 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGLLTDAVIKHP----HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_pred cHHHHcCCCCCcccccccchHHHHHHhCC----CcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEe
Confidence 01111 10 01111111122333333333 579999999999999999999999853 136778888
Q ss_pred ecCC-------------------------CcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHH-------HhcC--CCCH
Q 001748 447 TPEL-------------------------DKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICV-------EEAI--NFDQ 491 (1018)
Q Consensus 447 Tn~~-------------------------~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iak-------kegI--~Id~ 491 (1018)
||.- ..+.|.++.|+. ++.|.+++.+++.+++...+. ..|+ .+++
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 8721 125588899997 899999999999888665443 2344 5789
Q ss_pred HHHHHHHHHcC---CCHHHHHHHHHHH
Q 001748 492 AALDFIAAKSN---GSIRDAEMLLDQL 515 (1018)
Q Consensus 492 eAL~~LA~~s~---GnLR~Al~lLeqL 515 (1018)
+++++|+...- ...|-+...+++.
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~~ 711 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 99999997652 2456666666553
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29 E-value=1.5e-11 Score=154.42 Aligned_cols=206 Identities=17% Similarity=0.162 Sum_probs=148.5
Q ss_pred CCcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
...+|.++.||..+++++|+++.++.+...+...+. +.++|+||||+|||++|+.+|..+.......
T Consensus 164 ~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~-~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~------------ 230 (857)
T PRK10865 164 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPE------------ 230 (857)
T ss_pred HhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCc-CceEEECCCCCCHHHHHHHHHHHhhcCCCch------------
Confidence 346799999999999999999999999988877654 5568999999999999999999874211100
Q ss_pred eccCCCCccccccc------ccc--cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH--------HHHHHHHHHhc
Q 001748 373 FSSGRSRDVKEVDS------VRI--NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE--------TWATVLNSLEN 436 (1018)
Q Consensus 373 i~sG~~~DvieIda------as~--~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~--------a~naLLk~LEe 436 (1018)
...+ ..++.++. ... ...+.++.+++.+... ....|+||||+|.|... +.+.|...++.
T Consensus 231 ~l~~--~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~---~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~ 305 (857)
T PRK10865 231 GLKG--RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR 305 (857)
T ss_pred hhCC--CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc---CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc
Confidence 0001 11112111 111 1124577777765321 24569999999999632 57778877765
Q ss_pred cCCcEEEEEEecCCC-----cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH----hcCCCCHHHHHHHHHHcCC----
Q 001748 437 ISQHVVFVMITPELD-----KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE----EAINFDQAALDFIAAKSNG---- 503 (1018)
Q Consensus 437 pp~~vifILaTn~~~-----kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk----egI~Id~eAL~~LA~~s~G---- 503 (1018)
+.+.+|.+|+..+ .+++++.+||+.+.+..|+.++...+|+.+..+ .++.++++++...+..+.+
T Consensus 306 --g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~ 383 (857)
T PRK10865 306 --GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIAD 383 (857)
T ss_pred --CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccC
Confidence 6888999988765 478999999999999999999999998877654 3678899998877666642
Q ss_pred --CHHHHHHHHHHHHhh
Q 001748 504 --SIRDAEMLLDQLSLL 518 (1018)
Q Consensus 504 --nLR~Al~lLeqLsl~ 518 (1018)
-+..|+.+++.++..
T Consensus 384 ~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 384 RQLPDKAIDLIDEAASS 400 (857)
T ss_pred CCCChHHHHHHHHHhcc
Confidence 456777777776543
No 154
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.29 E-value=1e-10 Score=126.74 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=102.2
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecC-------------CCcchHHHhcCccEEEeCCCChhHHHHH
Q 001748 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPE-------------LDKLPRSALSRSQKYHFPKIKDGDIASR 477 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~-------------~~kL~~tI~SRcq~I~F~~ls~eEI~~~ 477 (1018)
+.|+||||+|+|..+.+..|-+.||.+-.. ++||++|. |+.+++.++.|..++...+++++++.++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 359999999999999999999999997554 46777664 4578999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHH----hhC-CccCHHHHHHHh
Q 001748 478 LRRICVEEAINFDQAALDFIAAKSN-GSIRDAEMLLDQLS----LLG-KKITLSLAYELI 531 (1018)
Q Consensus 478 L~~iakkegI~Id~eAL~~LA~~s~-GnLR~Al~lLeqLs----l~g-~~IT~edV~ell 531 (1018)
++.+++.+|+.++++++.+++.... .++|.++++|.-+. .++ +.|..++|+++.
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 9999999999999999999998764 59999999998442 234 378888887764
No 155
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.28 E-value=6.9e-11 Score=146.90 Aligned_cols=210 Identities=19% Similarity=0.258 Sum_probs=139.9
Q ss_pred ccc-ccCcHHHHHHHHHHHHc-----CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCC
Q 001748 306 FDE-LVGQNVVVRSLLSAISR-----GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSR 379 (1018)
Q Consensus 306 Fdd-LVGqe~iv~~L~~aIk~-----grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~ 379 (1018)
++. ..|++.+++.+.+++.. ......++|+||||+|||++++.+|+.++.. +..+..|...
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~-------------~~~i~~~~~~ 386 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK-------------YVRMALGGVR 386 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------------EEEEEcCCCC
Confidence 444 78999999999876652 1234579999999999999999999988632 1122222222
Q ss_pred ccccccccccc----chhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHH----HHHHHHHHhcc--------------
Q 001748 380 DVKEVDSVRIN----RSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGET----WATVLNSLENI-------------- 437 (1018)
Q Consensus 380 DvieIdaas~~----~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a----~naLLk~LEep-------------- 437 (1018)
+..++.+.... ....+...+..+. ....|++|||+|.++... +.+|+.+++.-
T Consensus 387 d~~~i~g~~~~~~g~~~G~~~~~l~~~~-----~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 387 DEAEIRGHRRTYIGSMPGKLIQKMAKVG-----VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred CHHHhccchhccCCCCCcHHHHHHHhcC-----CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccc
Confidence 32233221110 1122322233221 123599999999998764 58999999741
Q ss_pred -CCcEEEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHH-----H-----hcCCCCHHHHHHHHHHcC--CC
Q 001748 438 -SQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICV-----E-----EAINFDQAALDFIAAKSN--GS 504 (1018)
Q Consensus 438 -p~~vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iak-----k-----egI~Id~eAL~~LA~~s~--Gn 504 (1018)
-.+++||+++|.. .++++|++|+.++.|.+++.+++.++.+.... + ..+.++++++.+|++... -.
T Consensus 462 dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 462 DLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred cCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 2567777777665 59999999999999999999999888766653 1 135689999999997543 24
Q ss_pred HHHHHHHHHHHHh-------hC-----CccCHHHHHHHhccC
Q 001748 505 IRDAEMLLDQLSL-------LG-----KKITLSLAYELIGIV 534 (1018)
Q Consensus 505 LR~Al~lLeqLsl-------~g-----~~IT~edV~ellg~v 534 (1018)
.|.+...+++++. .+ -.|+.+++.+++|..
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 5666666666531 12 147778888877754
No 156
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.5e-11 Score=134.66 Aligned_cols=191 Identities=23% Similarity=0.237 Sum_probs=130.7
Q ss_pred CCcccccCcHHHHHHHHHHHH----------cC---CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 304 NFFDELVGQNVVVRSLLSAIS----------RG---MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk----------~g---rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
.+|+|+-|-+.++++|++.+. .+ +.+..+|+|||||||||.+|+++|++.++....
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn----------- 157 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN----------- 157 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce-----------
Confidence 379999999999999998864 22 345679999999999999999999998753111
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-----------HHHHHHHHHhc---
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-----------TWATVLNSLEN--- 436 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-----------a~naLLk~LEe--- 436 (1018)
+.+..+.-.++ .+-..+...+...+..=.+.+|+|||++.+... .-+.|.-..+.
T Consensus 158 ---v~~s~lt~KWf--------gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s 226 (386)
T KOG0737|consen 158 ---VSVSNLTSKWF--------GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSS 226 (386)
T ss_pred ---eeccccchhhH--------HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccC
Confidence 00111111121 122233333333333334569999999987622 12333333332
Q ss_pred -cCCcEEEEEEecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Q 001748 437 -ISQHVVFVMITPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEMLLD 513 (1018)
Q Consensus 437 -pp~~vifILaTn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~lLe 513 (1018)
....++++.+||.+..++++|++|+. +++..-|+..+..++|+-+.+.+.++ ++-.+..+|..++| +-+++.++..
T Consensus 227 ~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~ 305 (386)
T KOG0737|consen 227 KDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCR 305 (386)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHH
Confidence 23356777788999999999999965 89999999999999999999988886 44457788999988 6666666665
Q ss_pred HHHh
Q 001748 514 QLSL 517 (1018)
Q Consensus 514 qLsl 517 (1018)
..++
T Consensus 306 ~Aa~ 309 (386)
T KOG0737|consen 306 LAAL 309 (386)
T ss_pred HHhH
Confidence 5443
No 157
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.2e-11 Score=135.22 Aligned_cols=152 Identities=19% Similarity=0.252 Sum_probs=108.7
Q ss_pred cCCCCcccccCcHHHHHHHHHHHH----c-------CC-CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 001748 301 FRPNFFDELVGQNVVVRSLLSAIS----R-------GM-VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCR 368 (1018)
Q Consensus 301 yRP~tFddLVGqe~iv~~L~~aIk----~-------gr-l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~ 368 (1018)
-+|.+|+.++-....++.+.+-+. . |+ ..+.||||||||||||+++.|+|+.|++
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y------------- 261 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY------------- 261 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-------------
Confidence 346899999977777766665543 2 22 2367999999999999999999999963
Q ss_pred ccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH------------------HHHHHH
Q 001748 369 ECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG------------------ETWATV 430 (1018)
Q Consensus 369 sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~------------------~a~naL 430 (1018)
|+..+.-.....-.+++.|+.... ...||+|.+||.-.. -++..|
T Consensus 262 -----------dIydLeLt~v~~n~dLr~LL~~t~------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGL 324 (457)
T KOG0743|consen 262 -----------DIYDLELTEVKLDSDLRHLLLATP------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGL 324 (457)
T ss_pred -----------ceEEeeeccccCcHHHHHHHHhCC------CCcEEEEeecccccccccccccccccccCCcceeehHHh
Confidence 444444333333345888887652 345999999986421 135569
Q ss_pred HHHHhccCC----cEEEEEEecCCCcchHHHhcCcc---EEEeCCCChhHHHHHHHHHH
Q 001748 431 LNSLENISQ----HVVFVMITPELDKLPRSALSRSQ---KYHFPKIKDGDIASRLRRIC 482 (1018)
Q Consensus 431 Lk~LEepp~----~vifILaTn~~~kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~ia 482 (1018)
|+.++.... .-++||+||..++|+|+|+++.+ .+.+.--+.+.+........
T Consensus 325 LNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 325 LNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred hhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 999997754 44899999999999999999655 67777777666655555444
No 158
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.28 E-value=1.7e-11 Score=117.80 Aligned_cols=115 Identities=29% Similarity=0.396 Sum_probs=82.0
Q ss_pred EEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~ 411 (1018)
+||+||||+|||++|+.+|+.++.. .....+... . +.........++.+++.+.... .+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~--------------~~~i~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~---~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP--------------FIEIDGSEL--I--SSYAGDSEQKIRDFFKKAKKSA---KP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE--------------EEEEETTHH--H--TSSTTHHHHHHHHHHHHHHHTS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc--------------ccccccccc--c--cccccccccccccccccccccc---cc
Confidence 6899999999999999999998521 111111110 0 1111223456777777764222 35
Q ss_pred eEEEEeCccccCHHH-----------HHHHHHHHhccCC---cEEEEEEecCCCcchHHHh-cCcc-EEEeC
Q 001748 412 KIFIIDECQLLHGET-----------WATVLNSLENISQ---HVVFVMITPELDKLPRSAL-SRSQ-KYHFP 467 (1018)
Q Consensus 412 kVLIIDEaD~Ls~~a-----------~naLLk~LEepp~---~vifILaTn~~~kL~~tI~-SRcq-~I~F~ 467 (1018)
.|++|||+|.+.... .+.|+..++.... .+++|++|+..++++++++ +||. .+.|+
T Consensus 60 ~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 60 CVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp EEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred eeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 799999999998765 7889999988765 5999999999999999999 9988 45553
No 159
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.28 E-value=7.9e-11 Score=144.07 Aligned_cols=208 Identities=18% Similarity=0.175 Sum_probs=143.4
Q ss_pred cCCCCcccccCcHHHHHHHHHHHH-----------cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccc
Q 001748 301 FRPNFFDELVGQNVVVRSLLSAIS-----------RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369 (1018)
Q Consensus 301 yRP~tFddLVGqe~iv~~L~~aIk-----------~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~s 369 (1018)
....+|+++.|....+..+...+. .+.++..+||+||+|+|||++|+++++.++..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~------------- 212 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP------------- 212 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------------
Confidence 334579999998888877766543 13556789999999999999999999988632
Q ss_pred cceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--------------HHHHHHHHHHh
Q 001748 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--------------ETWATVLNSLE 435 (1018)
Q Consensus 370 c~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--------------~a~naLLk~LE 435 (1018)
....++.. +... ....+...++++++.+... .+.||||||+|.+.. ...+.||..|+
T Consensus 213 -f~~is~~~--~~~~--~~g~~~~~~~~~f~~a~~~----~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 213 -FFTISGSD--FVEM--FVGVGASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred -EEEEehHH--hHHh--hhcccHHHHHHHHHHHHhc----CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh
Confidence 11111111 1111 0112335677787776421 246999999999842 25677777777
Q ss_pred ccC--CcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHH
Q 001748 436 NIS--QHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAE 509 (1018)
Q Consensus 436 epp--~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al 509 (1018)
... ..+++|.+||.++.+++++++ |+. .+.|+.|+.++..++|+.++++..+.- +..+..+++.+.| +..++.
T Consensus 284 g~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sgadl~ 362 (644)
T PRK10733 284 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPGFSGADLA 362 (644)
T ss_pred cccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCHHHHH
Confidence 543 468888899999999999986 775 789999999999999988887654422 2235668888877 666666
Q ss_pred HHHHHHHhh-----CCccCHHHHHHHh
Q 001748 510 MLLDQLSLL-----GKKITLSLAYELI 531 (1018)
Q Consensus 510 ~lLeqLsl~-----g~~IT~edV~ell 531 (1018)
+++..++.. ...||.+++.+.+
T Consensus 363 ~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 363 NLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 666665432 2468888877654
No 160
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=2e-10 Score=130.48 Aligned_cols=227 Identities=16% Similarity=0.158 Sum_probs=141.1
Q ss_pred CcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCC--------ccccceeccC
Q 001748 305 FFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGL--------CRECALFSSG 376 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~--------C~sc~~i~sG 376 (1018)
.|.++|||++++..|..++...++. .+||.|++|||||++|+++++.+.+.......||+. |..|+....+
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~-~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~ 93 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIG-GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQN 93 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCC-eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcc
Confidence 7999999999999999999888774 689999999999999999999987655444445542 2233322211
Q ss_pred C--------CCcccccccc----cccchhHHHHHHHHhc----CCC-CCCCceEEEEeCccccCHHHHHHHHHHHhccCC
Q 001748 377 R--------SRDVKEVDSV----RINRSDRVGSLMKSAF----LPP-FSSRFKIFIIDECQLLHGETWATVLNSLENISQ 439 (1018)
Q Consensus 377 ~--------~~DvieIdaa----s~~~vd~IReLie~a~----~~P-~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~ 439 (1018)
. ...+..+... ...|.=++..-+.... ..+ ......+++|||++.|+...+..|+..|++-..
T Consensus 94 ~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~ 173 (350)
T CHL00081 94 GETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWN 173 (350)
T ss_pred cccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCe
Confidence 1 0111111110 0001001222221111 111 134567999999999999999999999976210
Q ss_pred -----------cEEEE-EEecCCC--cchHHHhcCcc-EEEeCCCCh-hHHHHHHHHHHH--------------------
Q 001748 440 -----------HVVFV-MITPELD--KLPRSALSRSQ-KYHFPKIKD-GDIASRLRRICV-------------------- 483 (1018)
Q Consensus 440 -----------~vifI-LaTn~~~--kL~~tI~SRcq-~I~F~~ls~-eEI~~~L~~iak-------------------- 483 (1018)
...|| ++|.++. .+.+.+..|+. .+.+..++. ++-.++|++...
T Consensus 174 ~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (350)
T CHL00081 174 TVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELR 253 (350)
T ss_pred EEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCH
Confidence 11233 3344432 68899999987 677777763 444444433210
Q ss_pred ---------HhcCCCCHHHHHHHHHHcC----CCHHHHHHHHHHH---Hhh-C-CccCHHHHHHHhc
Q 001748 484 ---------EEAINFDQAALDFIAAKSN----GSIRDAEMLLDQL---SLL-G-KKITLSLAYELIG 532 (1018)
Q Consensus 484 ---------kegI~Id~eAL~~LA~~s~----GnLR~Al~lLeqL---sl~-g-~~IT~edV~ellg 532 (1018)
-..+.++++.+++|++.+. -++|..+.++... ++. | ..++.+||+.+..
T Consensus 254 ~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~ 320 (350)
T CHL00081 254 SKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVIT 320 (350)
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 1256788988888777653 2678777777654 222 3 3678888877653
No 161
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.27 E-value=2e-10 Score=123.87 Aligned_cols=189 Identities=20% Similarity=0.277 Sum_probs=136.3
Q ss_pred cCCCCcccccCcHHHHHHHHHH---HHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC
Q 001748 301 FRPNFFDELVGQNVVVRSLLSA---ISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR 377 (1018)
Q Consensus 301 yRP~tFddLVGqe~iv~~L~~a---Ik~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~ 377 (1018)
..|..+++|+|-+..++.|.+. +-.|..++.+||+|++|||||++++++..++...
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~--------------------- 79 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ--------------------- 79 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc---------------------
Confidence 4456899999988877777654 4578889999999999999999999999887532
Q ss_pred CCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-HHHHHHHHHh----ccCCcEEEEEEecCCCc
Q 001748 378 SRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-TWATVLNSLE----NISQHVVFVMITPELDK 452 (1018)
Q Consensus 378 ~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-a~naLLk~LE----epp~~vifILaTn~~~k 452 (1018)
..-++++..... ..+.++++.+...|. +=||++|+.-.=..+ ....|..+|| ..|.+++|..++|..+-
T Consensus 80 GLRlIev~k~~L---~~l~~l~~~l~~~~~---kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 80 GLRLIEVSKEDL---GDLPELLDLLRDRPY---KFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred CceEEEECHHHh---ccHHHHHHHHhcCCC---CEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 234566655443 445666666655552 559999986543333 3445555554 56778877777775442
Q ss_pred chH-----------------------HHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHcCC
Q 001748 453 LPR-----------------------SALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQ-----AALDFIAAKSNG 503 (1018)
Q Consensus 453 L~~-----------------------tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~-----eAL~~LA~~s~G 503 (1018)
+++ +|..||. ++.|.+++.++-.++++..+++.|+.+++ +|+++.....+.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~R 233 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGR 233 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 221 2445776 89999999999999999999999999984 555665566666
Q ss_pred CHHHHHHHHHHHH
Q 001748 504 SIRDAEMLLDQLS 516 (1018)
Q Consensus 504 nLR~Al~lLeqLs 516 (1018)
+.|.|.+-++.+.
T Consensus 234 SGRtA~QF~~~l~ 246 (249)
T PF05673_consen 234 SGRTARQFIDDLA 246 (249)
T ss_pred CHHHHHHHHHHHh
Confidence 9999988877654
No 162
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.5e-10 Score=129.86 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=118.7
Q ss_pred cccccCcHHHHHHHHHHHH-------cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC
Q 001748 306 FDELVGQNVVVRSLLSAIS-------RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS 378 (1018)
Q Consensus 306 FddLVGqe~iv~~L~~aIk-------~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~ 378 (1018)
|+++|.+..+...|..... ...+...+|||||||||||.+|+-||..-+-. +.++.|..
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlD--------------YA~mTGGD 419 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLD--------------YAIMTGGD 419 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCc--------------eehhcCCC
Confidence 9999988877776665432 12234679999999999999999999876521 34444432
Q ss_pred CcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH------------HHHHHHHHHHhccCCcEEEEEE
Q 001748 379 RDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG------------ETWATVLNSLENISQHVVFVMI 446 (1018)
Q Consensus 379 ~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~------------~a~naLLk~LEepp~~vifILa 446 (1018)
+.+.+..++..|.++++.+... .+.-++||||+|.+.- .+.|+||----+...+++++++
T Consensus 420 -----VAPlG~qaVTkiH~lFDWakkS---~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlA 491 (630)
T KOG0742|consen 420 -----VAPLGAQAVTKIHKLFDWAKKS---RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLA 491 (630)
T ss_pred -----ccccchHHHHHHHHHHHHHhhc---ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEec
Confidence 2233344567788999987542 2456999999997642 2577777666666778999999
Q ss_pred ecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHh
Q 001748 447 TPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEE 485 (1018)
Q Consensus 447 Tn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakke 485 (1018)
||.+..++-++..|+. +++|+-|-.+|...+|..++.+.
T Consensus 492 tNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 492 TNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred cCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 9999999999999997 89999999999988888777653
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.27 E-value=7e-11 Score=148.51 Aligned_cols=201 Identities=19% Similarity=0.277 Sum_probs=130.2
Q ss_pred CcccccCcHHHHHHHHHHHHcC--------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccC
Q 001748 305 FFDELVGQNVVVRSLLSAISRG--------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSG 376 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~g--------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG 376 (1018)
.+..++||+.++..|..+|... ++...+||+||+|+|||++|++||+.+.... .+. .+-.|..+..
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~----~~~-i~id~se~~~- 639 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD----DAM-VRIDMSEFME- 639 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC----CcE-EEEEhHHhhh-
Confidence 4667999999999999998743 2225799999999999999999999885321 110 0001111110
Q ss_pred CCCccccccc-ccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEE
Q 001748 377 RSRDVKEVDS-VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFV 444 (1018)
Q Consensus 377 ~~~DvieIda-as~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifI 444 (1018)
.+.....+.. ....+.+....+.+.+...| +.||+|||++.+.+..++.|+++|++. ..+++||
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p----~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI 715 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRP----YSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCC----CCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEE
Confidence 0000000100 01112122222333333333 469999999999999999999999863 2355688
Q ss_pred EEecCC-------------------------CcchHHHhcCc-cEEEeCCCChhHHHHHHHHHHHH-------hc--CCC
Q 001748 445 MITPEL-------------------------DKLPRSALSRS-QKYHFPKIKDGDIASRLRRICVE-------EA--INF 489 (1018)
Q Consensus 445 LaTn~~-------------------------~kL~~tI~SRc-q~I~F~~ls~eEI~~~L~~iakk-------eg--I~I 489 (1018)
++|+.. ..+.|.+.+|+ .++.|.|+..+++..+++..+.+ .| +.+
T Consensus 716 ~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~i 795 (857)
T PRK10865 716 MTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHI 795 (857)
T ss_pred EeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcC
Confidence 887752 12446889999 68999999999998886665543 24 467
Q ss_pred CHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 001748 490 DQAALDFIAAKSNG---SIRDAEMLLDQL 515 (1018)
Q Consensus 490 d~eAL~~LA~~s~G---nLR~Al~lLeqL 515 (1018)
+++++++|+...-. ..|-+.+.+++.
T Consensus 796 s~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 796 SDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred CHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 99999999986532 466666666654
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=4.6e-11 Score=149.83 Aligned_cols=202 Identities=16% Similarity=0.149 Sum_probs=147.7
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceec
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~ 374 (1018)
..|.++-+...++.++|++..++.+...+..... +.++|+||||+|||++|+.+|..+........ .
T Consensus 167 ~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~-~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~------------l 233 (821)
T CHL00095 167 TNLTKEAIDGNLDPVIGREKEIERVIQILGRRTK-NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI------------L 233 (821)
T ss_pred HHHHHHHHcCCCCCCCCcHHHHHHHHHHHccccc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCChh------------h
Confidence 4567777788899999999999999999886654 45699999999999999999998753211100 0
Q ss_pred cCCCCcccccccc------ccc--chhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--------HHHHHHHHHHhccC
Q 001748 375 SGRSRDVKEVDSV------RIN--RSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--------ETWATVLNSLENIS 438 (1018)
Q Consensus 375 sG~~~DvieIdaa------s~~--~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--------~a~naLLk~LEepp 438 (1018)
. ...+++++.. ... ..+.++.+++.+.. .+..|+||||+|.|.. .+.+.|...|..
T Consensus 234 ~--~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-- 305 (821)
T CHL00095 234 E--DKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-- 305 (821)
T ss_pred c--CCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--
Confidence 0 1122333321 111 13467778877642 2356999999998864 245666667765
Q ss_pred CcEEEEEEecCCC-----cchHHHhcCccEEEeCCCChhHHHHHHHHHHH----HhcCCCCHHHHHHHHHHcCC---C--
Q 001748 439 QHVVFVMITPELD-----KLPRSALSRSQKYHFPKIKDGDIASRLRRICV----EEAINFDQAALDFIAAKSNG---S-- 504 (1018)
Q Consensus 439 ~~vifILaTn~~~-----kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iak----kegI~Id~eAL~~LA~~s~G---n-- 504 (1018)
+.+.+|.+|+..+ ...+++.+||+.+.+..++.++...+++.+.. ..++.++++++..++..+.+ +
T Consensus 306 g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~ 385 (821)
T CHL00095 306 GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRF 385 (821)
T ss_pred CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccc
Confidence 6788888888653 35789999999999999999998888776543 24677999999999998875 3
Q ss_pred -HHHHHHHHHHHHh
Q 001748 505 -IRDAEMLLDQLSL 517 (1018)
Q Consensus 505 -LR~Al~lLeqLsl 517 (1018)
++.|+.+|+.++.
T Consensus 386 lPdkaidlld~a~a 399 (821)
T CHL00095 386 LPDKAIDLLDEAGS 399 (821)
T ss_pred CchHHHHHHHHHHH
Confidence 7889999998754
No 165
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.26 E-value=8.5e-11 Score=136.55 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=118.7
Q ss_pred ccc-ccCcHHHHHHHHHHHHcC---------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccc
Q 001748 306 FDE-LVGQNVVVRSLLSAISRG---------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369 (1018)
Q Consensus 306 Fdd-LVGqe~iv~~L~~aIk~g---------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~s 369 (1018)
+++ ++||+++++.|..++... .....+||+||+|||||++|++||+.++++...
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~---------- 138 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAI---------- 138 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcee----------
Confidence 443 789999999987776321 012579999999999999999999988643111
Q ss_pred cceeccCCCCcccccccccccc--hh-HHHHHHHHhcCCCCCCCceEEEEeCccccCH--------------HHHHHHHH
Q 001748 370 CALFSSGRSRDVKEVDSVRINR--SD-RVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--------------ETWATVLN 432 (1018)
Q Consensus 370 c~~i~sG~~~DvieIdaas~~~--vd-~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--------------~a~naLLk 432 (1018)
..+.. +......+ ++ .+..++...........+.||||||+|.+.. .++++||+
T Consensus 139 ----id~~~-----l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~ 209 (412)
T PRK05342 139 ----ADATT-----LTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK 209 (412)
T ss_pred ----cchhh-----cccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHH
Confidence 11110 11111111 11 1233333322222234568999999999975 37899999
Q ss_pred HHhccC---------------------CcEEEEEEecCC------------------------------C----------
Q 001748 433 SLENIS---------------------QHVVFVMITPEL------------------------------D---------- 451 (1018)
Q Consensus 433 ~LEepp---------------------~~vifILaTn~~------------------------------~---------- 451 (1018)
.||+.. .++.||+..+.. .
T Consensus 210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~d 289 (412)
T PRK05342 210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPED 289 (412)
T ss_pred HHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHH
Confidence 998521 122333211100 0
Q ss_pred ----cchHHHhcCcc-EEEeCCCChhHHHHHHHH----HH-------HHhcC--CCCHHHHHHHHHHcC---CCHHHHHH
Q 001748 452 ----KLPRSALSRSQ-KYHFPKIKDGDIASRLRR----IC-------VEEAI--NFDQAALDFIAAKSN---GSIRDAEM 510 (1018)
Q Consensus 452 ----kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~----ia-------kkegI--~Id~eAL~~LA~~s~---GnLR~Al~ 510 (1018)
.+.|.++.|+. ++.|.+++.+++.+++.. +. ..+|+ .++++++++|++.+- -..|.+..
T Consensus 290 L~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrr 369 (412)
T PRK05342 290 LIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRS 369 (412)
T ss_pred HHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHH
Confidence 13566777887 789999999999888762 22 33444 589999999999752 34566666
Q ss_pred HHHHH
Q 001748 511 LLDQL 515 (1018)
Q Consensus 511 lLeqL 515 (1018)
.+++.
T Consensus 370 iie~~ 374 (412)
T PRK05342 370 ILEEI 374 (412)
T ss_pred HHHHH
Confidence 66665
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.26 E-value=1.3e-10 Score=146.31 Aligned_cols=200 Identities=20% Similarity=0.263 Sum_probs=134.3
Q ss_pred ccccCcHHHHHHHHHHHHcC--------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC
Q 001748 307 DELVGQNVVVRSLLSAISRG--------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS 378 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~g--------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~ 378 (1018)
..++||+.++..+..+|... ++.+.+||+||+|||||++|++||+.+.+.. .++-.+. |-.+. ..+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~----~~~i~~d-~s~~~-~~~ 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE----DAMVRID-MSEYM-EKH 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC----CcEEEEe-chhhc-ccc
Confidence 56889999999999998753 2346799999999999999999999885421 1110000 00000 011
Q ss_pred Cccccccc-ccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEEEE
Q 001748 379 RDVKEVDS-VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFVMI 446 (1018)
Q Consensus 379 ~DvieIda-as~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifILa 446 (1018)
.....+.+ ....+.+....+.+.+...| +.||+|||++.+.+++++.|+++|++. -.+++||++
T Consensus 639 ~~~~l~g~~~g~~g~~~~g~l~~~v~~~p----~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEEGGQLTEAVRRKP----YSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred hHHHhcCCCCCccCcccccHHHHHHHcCC----CcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 00001110 11112222334444444444 469999999999999999999999874 246778888
Q ss_pred ecCCC-------------------------cchHHHhcCcc-EEEeCCCChhHHHHHHHHHHH-------Hhc--CCCCH
Q 001748 447 TPELD-------------------------KLPRSALSRSQ-KYHFPKIKDGDIASRLRRICV-------EEA--INFDQ 491 (1018)
Q Consensus 447 Tn~~~-------------------------kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iak-------keg--I~Id~ 491 (1018)
||... .+.|.+..|+. ++.|.|++.+++.+++..... ..| +.+++
T Consensus 715 Sn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~ 794 (852)
T TIGR03346 715 SNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSD 794 (852)
T ss_pred CCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCH
Confidence 87521 13356777885 899999999998887555443 222 57899
Q ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHH
Q 001748 492 AALDFIAAKS---NGSIRDAEMLLDQLS 516 (1018)
Q Consensus 492 eAL~~LA~~s---~GnLR~Al~lLeqLs 516 (1018)
+++++|++.. .++.|.+.+.+++..
T Consensus 795 ~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 795 AALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 9999999974 488999998888753
No 167
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.9e-11 Score=126.90 Aligned_cols=177 Identities=23% Similarity=0.243 Sum_probs=123.1
Q ss_pred CCcccccCcHHHHHHHHHHHHc------------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISR------------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~------------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
..++|+-|.+..++.|.++|-- -++|..+|+|||||||||.+||+.|...+.. +
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--------------F 233 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--------------F 233 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch--------------H
Confidence 3679999999999999998742 2567789999999999999999999876532 1
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-----------HHHH---HHHHHhcc
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-----------TWAT---VLNSLENI 437 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-----------a~na---LLk~LEep 437 (1018)
.-..|...--.+| ..+..-+|+.+.-+. +..+.||||||+|.+... .+.. ||+.|+.+
T Consensus 234 LKLAgPQLVQMfI----GdGAkLVRDAFaLAK----EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGF 305 (424)
T KOG0652|consen 234 LKLAGPQLVQMFI----GDGAKLVRDAFALAK----EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 305 (424)
T ss_pred HHhcchHHHhhhh----cchHHHHHHHHHHhh----ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCC
Confidence 1222322111111 123455676665554 223469999999988632 4444 45555554
Q ss_pred --CCcEEEEEEecCCCcchHHHhcCc--c-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC
Q 001748 438 --SQHVVFVMITPELDKLPRSALSRS--Q-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG 503 (1018)
Q Consensus 438 --p~~vifILaTn~~~kL~~tI~SRc--q-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G 503 (1018)
...+.+|.+||..+-++|++++-. . .|+|+-|.++...++++-+.++.++. ++-..+.||+.+++
T Consensus 306 ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTdd 375 (424)
T KOG0652|consen 306 SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDD 375 (424)
T ss_pred CCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccc
Confidence 347889999999999999998744 3 79999999988888888888776664 22335667776653
No 168
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.2e-10 Score=124.04 Aligned_cols=168 Identities=19% Similarity=0.233 Sum_probs=117.8
Q ss_pred ccccCCC-CcccccCcHHHHHHHHHHHHcC------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCC
Q 001748 298 SQKFRPN-FFDELVGQNVVVRSLLSAISRG------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPC 364 (1018)
Q Consensus 298 ~eKyRP~-tFddLVGqe~iv~~L~~aIk~g------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PC 364 (1018)
.+.-+|. ++.|+-|.+..++.++++++-. .+|..+|+|||||||||.+|+++|+.....
T Consensus 145 ~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~-------- 216 (408)
T KOG0727|consen 145 GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA-------- 216 (408)
T ss_pred CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--------
Confidence 3334443 7889999888888888887531 456789999999999999999999864311
Q ss_pred CCccccceeccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCHH-----------HHHHHHH
Q 001748 365 GLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHGE-----------TWATVLN 432 (1018)
Q Consensus 365 g~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~~-----------a~naLLk 432 (1018)
+.-..|+.+--.++ ..+...+|+++.-+. ..| .++||||+|.+... .+..|+.
T Consensus 217 ------firvvgsefvqkyl----gegprmvrdvfrlakenap-----siifideidaiatkrfdaqtgadrevqril~e 281 (408)
T KOG0727|consen 217 ------FIRVVGSEFVQKYL----GEGPRMVRDVFRLAKENAP-----SIIFIDEIDAIATKRFDAQTGADREVQRILIE 281 (408)
T ss_pred ------eeeeccHHHHHHHh----ccCcHHHHHHHHHHhccCC-----cEEEeehhhhHhhhhccccccccHHHHHHHHH
Confidence 11122333221222 134456788877665 334 59999999988643 3444444
Q ss_pred H---Hhcc--CCcEEEEEEecCCCcchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCC
Q 001748 433 S---LENI--SQHVVFVMITPELDKLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAIN 488 (1018)
Q Consensus 433 ~---LEep--p~~vifILaTn~~~kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~ 488 (1018)
+ |+.+ ..++.+|++||..+.++|++++-.. .++|+-++..+-.-++..+..+.++.
T Consensus 282 llnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 282 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred HHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 4 4443 4588999999999999999998443 79999888888777788887776664
No 169
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.22 E-value=1.9e-10 Score=138.10 Aligned_cols=208 Identities=17% Similarity=0.164 Sum_probs=141.3
Q ss_pred cccCCCCcccccCcHHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC
Q 001748 299 QKFRPNFFDELVGQNVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR 377 (1018)
Q Consensus 299 eKyRP~tFddLVGqe~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~ 377 (1018)
.+.+..+|++++|+...++.+.+.++.- .....+||+|++||||+++|++|....... .
T Consensus 188 ~~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~----~---------------- 247 (534)
T TIGR01817 188 ARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA----K---------------- 247 (534)
T ss_pred cccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC----C----------------
Confidence 3455678999999999888888777642 334568999999999999999998764311 0
Q ss_pred CCcccccccccccchhHHH-HHHHHhc-----------CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-------
Q 001748 378 SRDVKEVDSVRINRSDRVG-SLMKSAF-----------LPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS------- 438 (1018)
Q Consensus 378 ~~DvieIdaas~~~vd~IR-eLie~a~-----------~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp------- 438 (1018)
-.++.++...... +.+. .++.... -....+...+|||||++.|+...+..|+.+|++..
T Consensus 248 -~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 248 -RPFVKVNCAALSE-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred -CCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCC
Confidence 1133333322211 1111 1111000 00112346799999999999999999999998632
Q ss_pred ----CcEEEEEEecCC-------CcchHHHhcCcc--EEEeCCCC--hhHHHHHHHHHHHH----hc--CCCCHHHHHHH
Q 001748 439 ----QHVVFVMITPEL-------DKLPRSALSRSQ--KYHFPKIK--DGDIASRLRRICVE----EA--INFDQAALDFI 497 (1018)
Q Consensus 439 ----~~vifILaTn~~-------~kL~~tI~SRcq--~I~F~~ls--~eEI~~~L~~iakk----eg--I~Id~eAL~~L 497 (1018)
.++.+|++|+.. ..+.+.+..|+. .+.++++. .++|..+++..+.+ .+ +.+++++++.|
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 246778877653 245566777765 57788887 46776665555443 23 57999999999
Q ss_pred HHHc-CCCHHHHHHHHHHHHhh--CCccCHHHHH
Q 001748 498 AAKS-NGSIRDAEMLLDQLSLL--GKKITLSLAY 528 (1018)
Q Consensus 498 A~~s-~GnLR~Al~lLeqLsl~--g~~IT~edV~ 528 (1018)
..+. .||+|.+.+.++.++.. +..|+.+++.
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATLSRSGTITRSDFS 439 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHhCCCCcccHHHCc
Confidence 9885 89999999999998765 4578888764
No 170
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.22 E-value=1.6e-10 Score=127.46 Aligned_cols=139 Identities=12% Similarity=0.194 Sum_probs=119.5
Q ss_pred CcEEEEEEecCCC--cchHHHhcCccEEEeCCCChhHHHHHHHHHHHHh------cCCCCHHHHHHHHHHcCCCHHHHHH
Q 001748 439 QHVVFVMITPELD--KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEE------AINFDQAALDFIAAKSNGSIRDAEM 510 (1018)
Q Consensus 439 ~~vifILaTn~~~--kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakke------gI~Id~eAL~~LA~~s~GnLR~Al~ 510 (1018)
+.+++|.+||+.+ .+.++|+|||+++.|.+++.+++...|++.+..+ .+.++++++++|+..++||.|.++|
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN 86 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILN 86 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence 6789999999876 7889999999999999999999999999988752 3689999999999999999999999
Q ss_pred HHHHHHhh--C-C--ccCHHHHHHHhcc----------CChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHH
Q 001748 511 LLDQLSLL--G-K--KITLSLAYELIGI----------VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQL 575 (1018)
Q Consensus 511 lLeqLsl~--g-~--~IT~edV~ellg~----------v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L 575 (1018)
.||.++.. . . .||.+.|+++++. ..-+.+..|.+.+...|...++..+..++..|+||..|.+-|
T Consensus 87 ~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRL 166 (300)
T PRK14700 87 LLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRM 166 (300)
T ss_pred HHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99996542 1 2 3999999998742 244557788899999999999999999999999999996655
Q ss_pred HH
Q 001748 576 AN 577 (1018)
Q Consensus 576 ~~ 577 (1018)
..
T Consensus 167 ii 168 (300)
T PRK14700 167 LC 168 (300)
T ss_pred HH
Confidence 43
No 171
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.3e-10 Score=137.40 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=135.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcC------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISRG------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~g------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
..|+|+.|..++++.|.+.|.-. +....+|||||||||||.+|.++|...+- -+
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~--------------~f 729 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL--------------RF 729 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe--------------eE
Confidence 46899999999999998887632 44567999999999999999999987542 12
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-----------HHHHHHHHHhccC--
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-----------TWATVLNSLENIS-- 438 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-----------a~naLLk~LEepp-- 438 (1018)
.-..|...--.+|.++ .+.+|++++.++. ..+-|+|+||+|.+.+. ..|.||.-|+...
T Consensus 730 isvKGPElL~KyIGaS----Eq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 730 ISVKGPELLSKYIGAS----EQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred EEecCHHHHHHHhccc----HHHHHHHHHHhhc----cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 2223333222344433 3689999998863 33569999999998753 7899999998543
Q ss_pred CcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Q 001748 439 QHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEMLLDQ 514 (1018)
Q Consensus 439 ~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~lLeq 514 (1018)
..++++.+|+.++-++|++++ |+. .+.++.|+..+..++|+.+.....+ -++..++.+|..++| .-.++..+|..
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~ll~~ 880 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSLLYN 880 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHHHHH
Confidence 467777778899999999998 444 5778888889999988877654333 244557889999887 34444444433
No 172
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.8e-10 Score=134.68 Aligned_cols=206 Identities=21% Similarity=0.287 Sum_probs=145.6
Q ss_pred cCcHHHHHHHHHHHH-----cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccc
Q 001748 310 VGQNVVVRSLLSAIS-----RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEV 384 (1018)
Q Consensus 310 VGqe~iv~~L~~aIk-----~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieI 384 (1018)
.|-+++++.+.+.+. .+.-++.++|+||||+|||++++.||++++.. .+.+.-|.-.|..||
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk-------------fvR~sLGGvrDEAEI 392 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK-------------FVRISLGGVRDEAEI 392 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC-------------EEEEecCccccHHHh
Confidence 477888888877654 22334789999999999999999999999853 345555666666677
Q ss_pred ccccccch----hHHHHHHHHhc-CCCCCCCceEEEEeCccccCHH----HHHHHHHHHhc-------------c--CCc
Q 001748 385 DSVRINRS----DRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHGE----TWATVLNSLEN-------------I--SQH 440 (1018)
Q Consensus 385 daas~~~v----d~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~~----a~naLLk~LEe-------------p--p~~ 440 (1018)
.+-+.+-+ ..|-+-+..+. ..| |++|||+|.|+.+ -..|||..|+- + -.+
T Consensus 393 RGHRRTYIGamPGrIiQ~mkka~~~NP------v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 393 RGHRRTYIGAMPGKIIQGMKKAGVKNP------VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ccccccccccCChHHHHHHHHhCCcCC------eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 65443322 23333333332 334 8999999999854 35678877751 1 247
Q ss_pred EEEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHH-----HHHhc-----CCCCHHHHHHHHHHcC--CCHHHH
Q 001748 441 VVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRI-----CVEEA-----INFDQAALDFIAAKSN--GSIRDA 508 (1018)
Q Consensus 441 vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~i-----akkeg-----I~Id~eAL~~LA~~s~--GnLR~A 508 (1018)
|.||.++|..+.++.+|+.|..+|++..++.+|-.++.+++ .++.| +.|+++|+..|.+... -.+|.+
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~L 546 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNL 546 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHH
Confidence 89999999999999999999999999999999977775443 33444 5689999999887763 467777
Q ss_pred HHHHHHHHhh-------C---C--ccCHHHHHHHhccC
Q 001748 509 EMLLDQLSLL-------G---K--KITLSLAYELIGIV 534 (1018)
Q Consensus 509 l~lLeqLsl~-------g---~--~IT~edV~ellg~v 534 (1018)
...|.+++.. + . .|+...+.+.+|..
T Consensus 547 eR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 547 EREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred HHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCc
Confidence 7777776421 1 1 35666666666643
No 173
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.5e-11 Score=129.91 Aligned_cols=178 Identities=20% Similarity=0.187 Sum_probs=117.6
Q ss_pred CcccccCcHHHHHHHHHHHH---------cC-C-CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 305 FFDELVGQNVVVRSLLSAIS---------RG-M-VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk---------~g-r-l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
.|+|+.|.+..++.|++++- .| + +-.++||||||||||+.||+++|.+.+.. +
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST----------------F 194 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST----------------F 194 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc----------------e
Confidence 68999999999999999863 22 2 34689999999999999999999987621 2
Q ss_pred ccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-----------HHHHHHHHHhcc---CC
Q 001748 374 SSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-----------TWATVLNSLENI---SQ 439 (1018)
Q Consensus 374 ~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-----------a~naLLk~LEep---p~ 439 (1018)
++-.+.|+. ...-..+..-++.|++-+. +..+.||||||+|.|... .-..||-.|... ..
T Consensus 195 FSvSSSDLv--SKWmGESEkLVknLFemAR----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 195 FSVSSSDLV--SKWMGESEKLVKNLFEMAR----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred EEeehHHHH--HHHhccHHHHHHHHHHHHH----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 222222221 1111122355777777665 234469999999988531 233456566543 23
Q ss_pred cEEEEEEecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCC
Q 001748 440 HVVFVMITPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGS 504 (1018)
Q Consensus 440 ~vifILaTn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~Gn 504 (1018)
.+.++.+||-+..|+.+|++||. +|.++-|........++-.+..-...+++..+..|++.++|-
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 55666677888899999999998 565555544443333333332333457888899999998873
No 174
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.20 E-value=1.7e-10 Score=143.28 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=125.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcC------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 303 PNFFDELVGQNVVVRSLLSAISRG------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 303 P~tFddLVGqe~iv~~L~~aIk~g------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
..+|+||+|.+.+++.+.+.+... ..+..+||+||+|||||++|+++|+.++..
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-------------- 239 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-------------- 239 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--------------
Confidence 358999999999999998887421 345789999999999999999999988531
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH-----------HHHHHHHHHHhccC-
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG-----------ETWATVLNSLENIS- 438 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~LEepp- 438 (1018)
.....+..+- ..........++.+++.+.. ..+.||+|||+|.+.. ..++.|+..|+...
T Consensus 240 ~i~i~~~~i~----~~~~g~~~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~ 311 (733)
T TIGR01243 240 FISINGPEIM----SKYYGESEERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG 311 (733)
T ss_pred EEEEecHHHh----cccccHHHHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc
Confidence 1111111100 00011123467777776642 2246999999998752 35677888887643
Q ss_pred -CcEEEEEEecCCCcchHHHhc--Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHcCCCHH
Q 001748 439 -QHVVFVMITPELDKLPRSALS--RSQ-KYHFPKIKDGDIASRLRRICVEEAINFD-QAALDFIAAKSNGSIR 506 (1018)
Q Consensus 439 -~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id-~eAL~~LA~~s~GnLR 506 (1018)
..+++|.+|+.++.+++++++ |+. .+.|..|+.++..++|+...+ ++.+. +..++.++..+.|-..
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCH
Confidence 356777788888899999987 665 688999999999998886554 34332 3457888888887443
No 175
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.7e-10 Score=132.80 Aligned_cols=194 Identities=21% Similarity=0.168 Sum_probs=135.6
Q ss_pred ccCCCCcccccCcHHHHHHHHHHHHc-----------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 001748 300 KFRPNFFDELVGQNVVVRSLLSAISR-----------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCR 368 (1018)
Q Consensus 300 KyRP~tFddLVGqe~iv~~L~~aIk~-----------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~ 368 (1018)
.-++..|+|+.|.+.+.+.+..++.- ..+...+|+.||||+|||.+++++|.+.+..
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at------------ 213 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT------------ 213 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcce------------
Confidence 34556899999999999988877542 1344679999999999999999999987521
Q ss_pred ccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-----------HH-HHHHHHHh-
Q 001748 369 ECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-----------TW-ATVLNSLE- 435 (1018)
Q Consensus 369 sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-----------a~-naLLk~LE- 435 (1018)
....+.....-.+++. +...++.++.-+.. ..+.|+||||+|.+..+ .. +.|+...-
T Consensus 214 --ff~iSassLtsK~~Ge----~eK~vralf~vAr~----~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~ 283 (428)
T KOG0740|consen 214 --FFNISASSLTSKYVGE----SEKLVRALFKVARS----LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK 283 (428)
T ss_pred --EeeccHHHhhhhccCh----HHHHHHHHHHHHHh----cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccc
Confidence 1111121111112211 23567777766542 23469999999987532 12 22333221
Q ss_pred --ccCCcEEEEEEecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHH
Q 001748 436 --NISQHVVFVMITPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEML 511 (1018)
Q Consensus 436 --epp~~vifILaTn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~l 511 (1018)
.+..++++|.+||.++.++.++++|++ ++.++.|+.+....++.+.+.+.+..+.+..+..|++.++| +-.++..+
T Consensus 284 ~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l 363 (428)
T KOG0740|consen 284 NSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITAL 363 (428)
T ss_pred cCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHH
Confidence 234588888899999999999999998 67788888888888889999888888889999999999987 44444444
Q ss_pred HHHH
Q 001748 512 LDQL 515 (1018)
Q Consensus 512 LeqL 515 (1018)
+...
T Consensus 364 ~kea 367 (428)
T KOG0740|consen 364 CKEA 367 (428)
T ss_pred HHHh
Confidence 4444
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.2e-10 Score=137.35 Aligned_cols=188 Identities=21% Similarity=0.309 Sum_probs=131.0
Q ss_pred ccccCcHHHHHHHHHHHHcC--------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC
Q 001748 307 DELVGQNVVVRSLLSAISRG--------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS 378 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~g--------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~ 378 (1018)
..++||++++..+.++|+.. ++-..+||.||.|+|||.+|++||..|...... .. .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~a---------li-------R 554 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQA---------LI-------R 554 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCcc---------ce-------e
Confidence 44789999999999999753 444679999999999999999999999632100 00 1
Q ss_pred Cccccc----------c-cccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc----------
Q 001748 379 RDVKEV----------D-SVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI---------- 437 (1018)
Q Consensus 379 ~DvieI----------d-aas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep---------- 437 (1018)
+|..|. . +.+..|-++-..|.+.+...| |.||++||++...++.+|.||+.|++-
T Consensus 555 ~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~P----ySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~V 630 (786)
T COG0542 555 IDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKP----YSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTV 630 (786)
T ss_pred echHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCC----CeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEE
Confidence 111111 0 112233344445556665555 579999999999999999999999852
Q ss_pred -CCcEEEEEEecCCC----------------------------cchHHHhcCcc-EEEeCCCChhHHHHHHHHHH-----
Q 001748 438 -SQHVVFVMITPELD----------------------------KLPRSALSRSQ-KYHFPKIKDGDIASRLRRIC----- 482 (1018)
Q Consensus 438 -p~~vifILaTn~~~----------------------------kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~ia----- 482 (1018)
-.++++||++|--. .+.|.++.|.. +|.|.+++.+++.+++...+
T Consensus 631 dFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~ 710 (786)
T COG0542 631 DFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAK 710 (786)
T ss_pred ecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 23678888876210 23467788888 99999999999888754433
Q ss_pred --HHhcC--CCCHHHHHHHHHHcCC---CHHHHHHHHHH
Q 001748 483 --VEEAI--NFDQAALDFIAAKSNG---SIRDAEMLLDQ 514 (1018)
Q Consensus 483 --kkegI--~Id~eAL~~LA~~s~G---nLR~Al~lLeq 514 (1018)
.+.++ .+++++.++|+..... ..|-+...|++
T Consensus 711 ~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 711 RLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHH
Confidence 33344 5799999999988742 44555555554
No 177
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.1e-10 Score=120.93 Aligned_cols=196 Identities=22% Similarity=0.268 Sum_probs=129.7
Q ss_pred ccccccCCCCcccccCcHHHHHHHHHHHHcC------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCC
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRG------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKP 363 (1018)
Q Consensus 296 ~L~eKyRP~tFddLVGqe~iv~~L~~aIk~g------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~P 363 (1018)
...+|....+++-+-|.+..++.+++.|.-. .-|..+|||||||||||.+|+++|....|.
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~------- 208 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT------- 208 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceE-------
Confidence 3456664445665557888888888877532 224579999999999999999999877543
Q ss_pred CCCccccceeccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCH-----------HHHHHHH
Q 001748 364 CGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHG-----------ETWATVL 431 (1018)
Q Consensus 364 Cg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLL 431 (1018)
+.-.+|...--.+|. .+..-+|+++--+. .+| .++|.||+|.+.. +.+..+|
T Consensus 209 -------firvsgselvqk~ig----egsrmvrelfvmarehap-----siifmdeidsigs~r~e~~~ggdsevqrtml 272 (404)
T KOG0728|consen 209 -------FIRVSGSELVQKYIG----EGSRMVRELFVMAREHAP-----SIIFMDEIDSIGSSRVESGSGGDSEVQRTML 272 (404)
T ss_pred -------EEEechHHHHHHHhh----hhHHHHHHHHHHHHhcCC-----ceEeeecccccccccccCCCCccHHHHHHHH
Confidence 111233322111222 23356788876655 334 5999999998853 3455544
Q ss_pred H---HHhc--cCCcEEEEEEecCCCcchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC
Q 001748 432 N---SLEN--ISQHVVFVMITPELDKLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG 503 (1018)
Q Consensus 432 k---~LEe--pp~~vifILaTn~~~kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G 503 (1018)
. .|+. ...++.+|++||..+-+++++++-.. .++|++|+.+...++|+-..++.++.-. -.+..||+...|
T Consensus 273 ellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rg-i~l~kiaekm~g 351 (404)
T KOG0728|consen 273 ELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG-INLRKIAEKMPG 351 (404)
T ss_pred HHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcc-cCHHHHHHhCCC
Confidence 4 4443 34588999999999999999998543 6999999999999999887777544210 114567777665
Q ss_pred -CHHHHHHHHHHH
Q 001748 504 -SIRDAEMLLDQL 515 (1018)
Q Consensus 504 -nLR~Al~lLeqL 515 (1018)
+-......+..+
T Consensus 352 asgaevk~vctea 364 (404)
T KOG0728|consen 352 ASGAEVKGVCTEA 364 (404)
T ss_pred Cccchhhhhhhhh
Confidence 334444444433
No 178
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.16 E-value=3.6e-10 Score=114.95 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=119.6
Q ss_pred EEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRF 411 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~ 411 (1018)
|||+|+.-.-+...++.+.+.+.... ...+++..++... ....++++.+...|+++..
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~------------------~~~~~~~~~~~~~----~~~~~l~~~~~s~slF~~~ 58 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKD------------------FDDFNVIVFDGSE----DDIDELLEELQSPSLFGDK 58 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTT------------------EEEEEEEE-STTS-----HHH-HTTTSTTTTSSSSE
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCC------------------CccceEEEEcccc----CcHHHHHHHHhcCCccCCC
Confidence 79999998888888888888753211 0112223333222 2344588888899999999
Q ss_pred eEEEEeCc----cccCHHHHHHHHHHHhccCCcEEEEEEec-CCC---cchHHHhcCccEEEeCCCChhHHHHHHHHHHH
Q 001748 412 KIFIIDEC----QLLHGETWATVLNSLENISQHVVFVMITP-ELD---KLPRSALSRSQKYHFPKIKDGDIASRLRRICV 483 (1018)
Q Consensus 412 kVLIIDEa----D~Ls~~a~naLLk~LEepp~~vifILaTn-~~~---kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iak 483 (1018)
+||||.++ +.........|..+++.+++++++|+.+. ..+ ++.+++.+.+.++.|.++...++..|++..++
T Consensus 59 klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 138 (172)
T PF06144_consen 59 KLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAK 138 (172)
T ss_dssp EEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHH
T ss_pred eEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHH
Confidence 99999999 45666788999999999999999998888 443 56778888888999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 001748 484 EEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL 517 (1018)
Q Consensus 484 kegI~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl 517 (1018)
+.|+.++++|+++|+..+++|++.+.++|+++++
T Consensus 139 ~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 139 KNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999864
No 179
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.15 E-value=1.3e-09 Score=119.53 Aligned_cols=196 Identities=14% Similarity=0.122 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC-CCccccc-cccc-c
Q 001748 313 NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR-SRDVKEV-DSVR-I 389 (1018)
Q Consensus 313 e~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~-~~DvieI-daas-~ 389 (1018)
..+.+.+..++..+ ..+||+||+|||||++|+++|+.++..- ....+. ..+...+ .... .
T Consensus 8 ~~l~~~~l~~l~~g---~~vLL~G~~GtGKT~lA~~la~~lg~~~--------------~~i~~~~~~~~~dllg~~~~~ 70 (262)
T TIGR02640 8 KRVTSRALRYLKSG---YPVHLRGPAGTGKTTLAMHVARKRDRPV--------------MLINGDAELTTSDLVGSYAGY 70 (262)
T ss_pred HHHHHHHHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHhCCCE--------------EEEeCCccCCHHHHhhhhccc
Confidence 34555666666665 4689999999999999999999775321 011110 0100000 0000 0
Q ss_pred cchhHHHHHHHHh-----------cCCCC---CCCceEEEEeCccccCHHHHHHHHHHHhcc----------------CC
Q 001748 390 NRSDRVGSLMKSA-----------FLPPF---SSRFKIFIIDECQLLHGETWATVLNSLENI----------------SQ 439 (1018)
Q Consensus 390 ~~vd~IReLie~a-----------~~~P~---~g~~kVLIIDEaD~Ls~~a~naLLk~LEep----------------p~ 439 (1018)
.....+..++... ...|. .....+++|||++.+.+++++.|+..|++. ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~ 150 (262)
T TIGR02640 71 TRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHP 150 (262)
T ss_pred chhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCC
Confidence 0000001110000 00111 113459999999999999999999999752 12
Q ss_pred cEEEEEEecCC-----CcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC----------CC
Q 001748 440 HVVFVMITPEL-----DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSN----------GS 504 (1018)
Q Consensus 440 ~vifILaTn~~-----~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~----------Gn 504 (1018)
+..+|+++|.. ..+++++..||..+.+..|+.++..++|.... .++++.++.+++.+. -.
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~ 225 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSG 225 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCc
Confidence 44566666643 25688999999999999999888888887653 356666666665431 13
Q ss_pred HHHHHHHHHHHHhhCC--ccCHHHHHHH
Q 001748 505 IRDAEMLLDQLSLLGK--KITLSLAYEL 530 (1018)
Q Consensus 505 LR~Al~lLeqLsl~g~--~IT~edV~el 530 (1018)
+|.++.+...+...+. .++.+++.++
T Consensus 226 ~r~~i~~~~~~~~~~~~~~~~~~~~~~~ 253 (262)
T TIGR02640 226 LRASLMIAEVATQQDIPVDVDDEDFVDL 253 (262)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcHHHHHH
Confidence 6677666666655532 3444444443
No 180
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.8e-10 Score=131.81 Aligned_cols=190 Identities=22% Similarity=0.325 Sum_probs=138.0
Q ss_pred cccCcHHHHHHHHHHHHcCCC-----CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 308 ELVGQNVVVRSLLSAISRGMV-----TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aIk~grl-----~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
|=.|.+++++.+.+.|.-+++ +..+.|+||||+|||++++.||++|+.+ .+.+.-|.-.|+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-------------FfRfSvGG~tDvA 478 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-------------FFRFSVGGMTDVA 478 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-------------eEEEeccccccHH
Confidence 345788999999988864433 3579999999999999999999999854 4556666667777
Q ss_pred ccccccccch----hHHHHHHHHhcCCCCCCCceEEEEeCccccCHH----HHHHHHHHHhc------------c---CC
Q 001748 383 EVDSVRINRS----DRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE----TWATVLNSLEN------------I---SQ 439 (1018)
Q Consensus 383 eIdaas~~~v----d~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~----a~naLLk~LEe------------p---p~ 439 (1018)
+|.+-+..-+ ..+-+-+..+.+ ..-|++|||+|.+... -..|||..|+- . -.
T Consensus 479 eIkGHRRTYVGAMPGkiIq~LK~v~t-----~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 479 EIKGHRRTYVGAMPGKIIQCLKKVKT-----ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred hhcccceeeeccCChHHHHHHHhhCC-----CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 7766544322 234344444432 2348999999998742 35677777641 1 13
Q ss_pred cEEEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHH-----H-----hcCCCCHHHHHHHHHHcC--CCHHH
Q 001748 440 HVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICV-----E-----EAINFDQAALDFIAAKSN--GSIRD 507 (1018)
Q Consensus 440 ~vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iak-----k-----egI~Id~eAL~~LA~~s~--GnLR~ 507 (1018)
.+.||.++|..+.|+++|+.|..+|++..+..+|-.++.++++- . +.++++++|+..|.+... -.+|.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRn 633 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRN 633 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHH
Confidence 67899999999999999999999999999999998777555432 2 356789999877766553 35777
Q ss_pred HHHHHHHH
Q 001748 508 AEMLLDQL 515 (1018)
Q Consensus 508 Al~lLeqL 515 (1018)
+..-++++
T Consensus 634 Lqk~iekI 641 (906)
T KOG2004|consen 634 LQKQIEKI 641 (906)
T ss_pred HHHHHHHH
Confidence 77777665
No 181
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.11 E-value=9.7e-10 Score=126.65 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=82.5
Q ss_pred CceEEEEeCccccCH------------HHHHHHHHHHhcc----------CCcEEEEEEe----cCCCcchHHHhcCcc-
Q 001748 410 RFKIFIIDECQLLHG------------ETWATVLNSLENI----------SQHVVFVMIT----PELDKLPRSALSRSQ- 462 (1018)
Q Consensus 410 ~~kVLIIDEaD~Ls~------------~a~naLLk~LEep----------p~~vifILaT----n~~~kL~~tI~SRcq- 462 (1018)
...||+|||+|.+.. .+|.+||+++|.. ..++.||++. ..+..+.|.+.-|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 456999999999863 2789999999973 2355666653 245578899999998
Q ss_pred EEEeCCCChhHHHHHHHH-----------HHHHhcC--CCCHHHHHHHHHHcC--------CCHHHHHHHHHHHHh
Q 001748 463 KYHFPKIKDGDIASRLRR-----------ICVEEAI--NFDQAALDFIAAKSN--------GSIRDAEMLLDQLSL 517 (1018)
Q Consensus 463 ~I~F~~ls~eEI~~~L~~-----------iakkegI--~Id~eAL~~LA~~s~--------GnLR~Al~lLeqLsl 517 (1018)
++.+.+++.+++.++|.. .++.+|+ .|+++|++.||+.+- -..|.+...++++..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 799999999999888722 2334565 589999999998763 356888888888743
No 182
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.10 E-value=1.1e-09 Score=127.02 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=119.2
Q ss_pred ccc-ccCcHHHHHHHHHHHHc----------CC-------CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 001748 306 FDE-LVGQNVVVRSLLSAISR----------GM-------VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLC 367 (1018)
Q Consensus 306 Fdd-LVGqe~iv~~L~~aIk~----------gr-------l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C 367 (1018)
|++ ++||+++++.|..++.+ .. ....+||+||+|+|||++|+++|+.++...
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf---------- 144 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF---------- 144 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe----------
Confidence 444 57999999999877621 11 125799999999999999999999885321
Q ss_pred cccceeccCCCCcccccccccccch---hHHHHHHHHhcCCCCCCCceEEEEeCccccCH--------------HHHHHH
Q 001748 368 RECALFSSGRSRDVKEVDSVRINRS---DRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--------------ETWATV 430 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieIdaas~~~v---d~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--------------~a~naL 430 (1018)
.+..... +......+. ..+..++......-....+.||+|||+|.+.. ..+++|
T Consensus 145 ----~~~da~~-----L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~L 215 (413)
T TIGR00382 145 ----AIADATT-----LTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQAL 215 (413)
T ss_pred ----EEechhh-----ccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHH
Confidence 1111110 111111111 11223333221111123456999999999986 589999
Q ss_pred HHHHhccC-------------CcEEEEEEecCC---------------------------C-------------------
Q 001748 431 LNSLENIS-------------QHVVFVMITPEL---------------------------D------------------- 451 (1018)
Q Consensus 431 Lk~LEepp-------------~~vifILaTn~~---------------------------~------------------- 451 (1018)
|+.||... .+.++|+++|-. +
T Consensus 216 L~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~d 295 (413)
T TIGR00382 216 LKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPED 295 (413)
T ss_pred HHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHH
Confidence 99997421 133444443320 0
Q ss_pred ----cchHHHhcCcc-EEEeCCCChhHHHHHHHH----HHHH-------hcC--CCCHHHHHHHHHHcC---CCHHHHHH
Q 001748 452 ----KLPRSALSRSQ-KYHFPKIKDGDIASRLRR----ICVE-------EAI--NFDQAALDFIAAKSN---GSIRDAEM 510 (1018)
Q Consensus 452 ----kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~----iakk-------egI--~Id~eAL~~LA~~s~---GnLR~Al~ 510 (1018)
.+.|.++.|+. ++.|.+++.+++.+++.. +.++ +|+ .++++++++|++.+- -..|.+..
T Consensus 296 l~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~ 375 (413)
T TIGR00382 296 LVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRS 375 (413)
T ss_pred HHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHH
Confidence 14467778886 688999999999888764 2221 244 579999999999752 34677777
Q ss_pred HHHHHH
Q 001748 511 LLDQLS 516 (1018)
Q Consensus 511 lLeqLs 516 (1018)
.+++..
T Consensus 376 iie~~l 381 (413)
T TIGR00382 376 IVEGLL 381 (413)
T ss_pred HHHHhh
Confidence 777653
No 183
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4e-10 Score=120.91 Aligned_cols=177 Identities=20% Similarity=0.211 Sum_probs=124.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcC------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISRG------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~g------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
.++.|+-|..+.++.|++.++.. .+|..+|+|||||||||.+||++|+... .|+
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--------------acf 239 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--------------ACF 239 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--------------ceE
Confidence 48899999999999999887643 4567899999999999999999997653 355
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH-----------HHHHHHHHHHh-----
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG-----------ETWATVLNSLE----- 435 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~LE----- 435 (1018)
.-..|+..--.++ ..+...+|++++-+... .--++|+||+|.+.. +.+..+|.++.
T Consensus 240 irvigselvqkyv----gegarmvrelf~martk----kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgf 311 (435)
T KOG0729|consen 240 IRVIGSELVQKYV----GEGARMVRELFEMARTK----KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGF 311 (435)
T ss_pred EeehhHHHHHHHh----hhhHHHHHHHHHHhccc----ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCC
Confidence 4444543322222 23445789999887542 235899999998863 24555555553
Q ss_pred ccCCcEEEEEEecCCCcchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHH-HHHHHHHcCCC
Q 001748 436 NISQHVVFVMITPELDKLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAA-LDFIAAKSNGS 504 (1018)
Q Consensus 436 epp~~vifILaTn~~~kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eA-L~~LA~~s~Gn 504 (1018)
+|.+++.++++||.++.|+|+|.+-.. .++|.-++.+-...+++-+++...+ +.+. .++||+++.++
T Consensus 312 dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv--erdir~ellarlcpns 382 (435)
T KOG0729|consen 312 DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV--ERDIRFELLARLCPNS 382 (435)
T ss_pred CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccccc--ccchhHHHHHhhCCCC
Confidence 355689999999999999999998443 6889888877666666655554333 2222 46677777543
No 184
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.7e-10 Score=122.53 Aligned_cols=158 Identities=19% Similarity=0.242 Sum_probs=111.7
Q ss_pred cccCCCCcccccCcHHHHHHHHHHHHcC------------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCC
Q 001748 299 QKFRPNFFDELVGQNVVVRSLLSAISRG------------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGL 366 (1018)
Q Consensus 299 eKyRP~tFddLVGqe~iv~~L~~aIk~g------------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~ 366 (1018)
+|-.-.+|.|+-|.+..++.++++++-. ++|..+++||+||||||.+|+++|+.....
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT---------- 246 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT---------- 246 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh----------
Confidence 3333458999999999999999998632 567789999999999999999999865321
Q ss_pred ccccceeccCCCCcccccccccccchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCH-----------HHHHHHHHHH
Q 001748 367 CRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHG-----------ETWATVLNSL 434 (1018)
Q Consensus 367 C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~L 434 (1018)
+.-..|+. .|......+..-+|+++.-+. .+| .|+||||+|.+.. +.+..+|.+|
T Consensus 247 ----FlRvvGse----LiQkylGdGpklvRqlF~vA~e~ap-----SIvFiDEIdAiGtKRyds~SggerEiQrtmLELL 313 (440)
T KOG0726|consen 247 ----FLRVVGSE----LIQKYLGDGPKLVRELFRVAEEHAP-----SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL 313 (440)
T ss_pred ----hhhhhhHH----HHHHHhccchHHHHHHHHHHHhcCC-----ceEEeehhhhhccccccCCCccHHHHHHHHHHHH
Confidence 11111211 111222345567889988775 444 4999999998863 2444444444
Q ss_pred ---hcc--CCcEEEEEEecCCCcchHHHhcCcc---EEEeCCCChhHHHHHHH
Q 001748 435 ---ENI--SQHVVFVMITPELDKLPRSALSRSQ---KYHFPKIKDGDIASRLR 479 (1018)
Q Consensus 435 ---Eep--p~~vifILaTn~~~kL~~tI~SRcq---~I~F~~ls~eEI~~~L~ 479 (1018)
+.+ ..++.+|++||..+.|+|++++-.. .|.|+.++...-..+++
T Consensus 314 NQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 314 NQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQ 366 (440)
T ss_pred HhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEE
Confidence 433 4589999999999999999998543 69999988776655543
No 185
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.08 E-value=1.6e-09 Score=124.85 Aligned_cols=107 Identities=20% Similarity=0.280 Sum_probs=82.6
Q ss_pred CceEEEEeCccccCH------------HHHHHHHHHHhcc----------CCcEEEEEEec----CCCcchHHHhcCcc-
Q 001748 410 RFKIFIIDECQLLHG------------ETWATVLNSLENI----------SQHVVFVMITP----ELDKLPRSALSRSQ- 462 (1018)
Q Consensus 410 ~~kVLIIDEaD~Ls~------------~a~naLLk~LEep----------p~~vifILaTn----~~~kL~~tI~SRcq- 462 (1018)
...||+|||+|.+.. .+|.+||+++|.. ..++.||++.. .+..+.|.+.-|+.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 467999999999863 2799999999973 23566776643 45578999999998
Q ss_pred EEEeCCCChhHHHHHHH-----------HHHHHhcC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Q 001748 463 KYHFPKIKDGDIASRLR-----------RICVEEAI--NFDQAALDFIAAKS--------NGSIRDAEMLLDQLS 516 (1018)
Q Consensus 463 ~I~F~~ls~eEI~~~L~-----------~iakkegI--~Id~eAL~~LA~~s--------~GnLR~Al~lLeqLs 516 (1018)
++.+.+++.+++..+|. ..++.+|+ .|+++|+..||+.+ +-..|.+...++++.
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 79999999999998862 22344565 57999999999876 336788888888874
No 186
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.08 E-value=2.4e-09 Score=121.29 Aligned_cols=196 Identities=16% Similarity=0.162 Sum_probs=128.3
Q ss_pred ccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc
Q 001748 309 LVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV 387 (1018)
Q Consensus 309 LVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa 387 (1018)
+||+...++.+.+.++. ......+||+|++||||+++|++|...-... .. .++.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~----~~-----------------pfv~vnc~ 59 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW----QG-----------------PLVKLNCA 59 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc----CC-----------------CeEEEeCC
Confidence 46777777666666553 2334569999999999999999997654211 11 12223222
Q ss_pred cccchhHHH-HHHHHhc-----------CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------CcEEEE
Q 001748 388 RINRSDRVG-SLMKSAF-----------LPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QHVVFV 444 (1018)
Q Consensus 388 s~~~vd~IR-eLie~a~-----------~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~vifI 444 (1018)
.... +.+. .++.... -....+...++||||++.|+...+..|+.+|++.. .++.+|
T Consensus 60 ~~~~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI 138 (329)
T TIGR02974 60 ALSE-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLV 138 (329)
T ss_pred CCCh-HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEE
Confidence 1110 1111 1111000 00112346799999999999999999999998632 456788
Q ss_pred EEecCC-------CcchHHHhcCcc--EEEeCCCC--hhHHHHHHHHH----HHHhc----CCCCHHHHHHHHHHc-CCC
Q 001748 445 MITPEL-------DKLPRSALSRSQ--KYHFPKIK--DGDIASRLRRI----CVEEA----INFDQAALDFIAAKS-NGS 504 (1018)
Q Consensus 445 LaTn~~-------~kL~~tI~SRcq--~I~F~~ls--~eEI~~~L~~i----akkeg----I~Id~eAL~~LA~~s-~Gn 504 (1018)
++|+.. ..+.+.|..|+. .+.++++. .+||..+++.. +.+.| ..+++++++.|..+. .||
T Consensus 139 ~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGN 218 (329)
T TIGR02974 139 CATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGN 218 (329)
T ss_pred EechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCch
Confidence 887643 245677888874 68888887 36666655444 33334 358999999998887 899
Q ss_pred HHHHHHHHHHHHhhC--CccCHHH
Q 001748 505 IRDAEMLLDQLSLLG--KKITLSL 526 (1018)
Q Consensus 505 LR~Al~lLeqLsl~g--~~IT~ed 526 (1018)
+|.+.+.+++++... ..|+.++
T Consensus 219 vrEL~n~i~~~~~~~~~~~~~~~~ 242 (329)
T TIGR02974 219 VRELKNVVERSVYRHGLEEAPIDE 242 (329)
T ss_pred HHHHHHHHHHHHHhCCCCccchhh
Confidence 999999999987753 4566554
No 187
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.07 E-value=3.2e-09 Score=115.76 Aligned_cols=120 Identities=26% Similarity=0.337 Sum_probs=100.4
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecC------------CCcchHHHhcCccEEEeCCCChhHHHHHH
Q 001748 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPE------------LDKLPRSALSRSQKYHFPKIKDGDIASRL 478 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~------------~~kL~~tI~SRcq~I~F~~ls~eEI~~~L 478 (1018)
+.|+||||+|+|.-+.+..|-+.+|+--.. ++|++||. ++.+|-.++.|..++...|++.+++..+|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 459999999999999999999999975443 46666653 45788999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHhh-----CCccCHHHHHHHh
Q 001748 479 RRICVEEAINFDQAALDFIAAKSN-GSIRDAEMLLDQLSLL-----GKKITLSLAYELI 531 (1018)
Q Consensus 479 ~~iakkegI~Id~eAL~~LA~~s~-GnLR~Al~lLeqLsl~-----g~~IT~edV~ell 531 (1018)
+.+|+++++.+.++|+++|..... -++|.+++++....+. +..+..++|+.+.
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y 426 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVY 426 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHH
Confidence 999999999999999999998775 4899999999876432 4556777666653
No 188
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.06 E-value=9e-09 Score=120.75 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=118.3
Q ss_pred cccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc
Q 001748 308 ELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV 387 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa 387 (1018)
.|+|++++++.+..++..+. ++||+||||||||++|++|++.+....+... ..|... . +.
T Consensus 21 ~i~gre~vI~lll~aalag~---hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~------~~~~ft---t--------p~ 80 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE---SVFLLGPPGIAKSLIARRLKFAFQNARAFEY------LMTRFS---T--------PE 80 (498)
T ss_pred hccCcHHHHHHHHHHHccCC---CEEEECCCChhHHHHHHHHHHHhcccCccee------eeeeec---C--------cH
Confidence 47899999999999887764 6899999999999999999998742110000 001100 0 00
Q ss_pred cccchhHHHHHHHH-----hcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC---------CcEEE-EEEecCCC-
Q 001748 388 RINRSDRVGSLMKS-----AFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS---------QHVVF-VMITPELD- 451 (1018)
Q Consensus 388 s~~~vd~IReLie~-----a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp---------~~vif-ILaTn~~~- 451 (1018)
...|...+....+. ....+. ....++|+||+..+++..+++||..|++.. -...| +++|+...
T Consensus 81 DLfG~l~i~~~~~~g~f~r~~~G~L-~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE 159 (498)
T PRK13531 81 EVFGPLSIQALKDEGRYQRLTSGYL-PEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPE 159 (498)
T ss_pred HhcCcHHHhhhhhcCchhhhcCCcc-ccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcc
Confidence 11111112222111 111111 123499999999999999999999996532 12234 44554332
Q ss_pred --cchHHHhcCcc-EEEeCCCCh-hHHHHHHHHHHH-----------------------HhcCCCCHHHHHHHHHHcC--
Q 001748 452 --KLPRSALSRSQ-KYHFPKIKD-GDIASRLRRICV-----------------------EEAINFDQAALDFIAAKSN-- 502 (1018)
Q Consensus 452 --kL~~tI~SRcq-~I~F~~ls~-eEI~~~L~~iak-----------------------kegI~Id~eAL~~LA~~s~-- 502 (1018)
...+++..|+. .+.+++++. ++...+|..... -..+.+++..+++|.....
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~l 239 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQL 239 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHH
Confidence 24458999986 577788864 444555543111 1345677777777766542
Q ss_pred --------CCHHHHHHHHHHH---Hhh-C-CccCHHHHH
Q 001748 503 --------GSIRDAEMLLDQL---SLL-G-KKITLSLAY 528 (1018)
Q Consensus 503 --------GnLR~Al~lLeqL---sl~-g-~~IT~edV~ 528 (1018)
-+.|..+.++.-+ ++. | ..++.+||.
T Consensus 240 r~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 240 DALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred hcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 2556666655543 333 3 356777766
No 189
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-09 Score=135.08 Aligned_cols=192 Identities=21% Similarity=0.173 Sum_probs=138.3
Q ss_pred CCcccccCcHHHHHHHHHHHHc------------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISR------------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~------------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
..|+++.|.+.++..|++.+-. -..+..+||+||||||||.+|+++|.++...+.. .-+
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k---------isf 332 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK---------ISF 332 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccc---------cch
Confidence 4799999999999999988642 2346779999999999999999999876422111 011
Q ss_pred eeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-----------HHHHHHHHHhccC--
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-----------TWATVLNSLENIS-- 438 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-----------a~naLLk~LEepp-- 438 (1018)
..-.|..-+-.+++.+ ..+.+.+++++... .+.|+++||+|.|.+. ....||..|+..+
T Consensus 333 fmrkgaD~lskwvgEa----ERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR 404 (1080)
T KOG0732|consen 333 FMRKGADCLSKWVGEA----ERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR 404 (1080)
T ss_pred hhhcCchhhccccCcH----HHHHHHHHHHHhcc----CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC
Confidence 1112222222222222 25788888888622 2459999999977642 3556888887654
Q ss_pred CcEEEEEEecCCCcchHHHhcCcc---EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHH
Q 001748 439 QHVVFVMITPELDKLPRSALSRSQ---KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLL 512 (1018)
Q Consensus 439 ~~vifILaTn~~~kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lL 512 (1018)
+.+++|.+|+.++.+.+++++... .+.|+-++.+...++|.-.-.+..-.+....+..||+.+.|-.+.-+..|
T Consensus 405 gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaL 481 (1080)
T KOG0732|consen 405 GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKAL 481 (1080)
T ss_pred CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHH
Confidence 478899999999999999988544 68888888888888888777777777889999999999877554444333
No 190
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.05 E-value=8.1e-09 Score=110.24 Aligned_cols=190 Identities=18% Similarity=0.240 Sum_probs=136.6
Q ss_pred cCCCCcccccCcHHHHHHHHH---HHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC
Q 001748 301 FRPNFFDELVGQNVVVRSLLS---AISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR 377 (1018)
Q Consensus 301 yRP~tFddLVGqe~iv~~L~~---aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~ 377 (1018)
+.|-.+.+|+|-+...+.|.+ .+..|..++.+||+|.+||||+++++++-.++.. .
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~---------------------~ 112 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD---------------------E 112 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh---------------------c
Confidence 445678899997777766654 4567999999999999999999999999988863 2
Q ss_pred CCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-HHHHHHHHHh----ccCCcEEEEEEecCCCc
Q 001748 378 SRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-TWATVLNSLE----NISQHVVFVMITPELDK 452 (1018)
Q Consensus 378 ~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-a~naLLk~LE----epp~~vifILaTn~~~k 452 (1018)
...++|++.... ..+-.|++.+...|. +-|||+|+.-.=..+ +..+|...|| ..|.+|+|..++|..+-
T Consensus 113 glrLVEV~k~dl---~~Lp~l~~~Lr~~~~---kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHL 186 (287)
T COG2607 113 GLRLVEVDKEDL---ATLPDLVELLRARPE---KFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHL 186 (287)
T ss_pred CCeEEEEcHHHH---hhHHHHHHHHhcCCc---eEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccc
Confidence 345777765543 445566777766553 558888987554443 4445555554 56778877777776553
Q ss_pred chHH----------------------HhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHH-----HHHHHHcCCC
Q 001748 453 LPRS----------------------ALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAAL-----DFIAAKSNGS 504 (1018)
Q Consensus 453 L~~t----------------------I~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL-----~~LA~~s~Gn 504 (1018)
+++. +-.||. ++.|.+.+.++...++...+++.++.++++.+ +....+.+.+
T Consensus 187 l~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RS 266 (287)
T COG2607 187 LPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRS 266 (287)
T ss_pred ccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3321 223665 89999999999999999999999999977554 4444444568
Q ss_pred HHHHHHHHHHHHh
Q 001748 505 IRDAEMLLDQLSL 517 (1018)
Q Consensus 505 LR~Al~lLeqLsl 517 (1018)
-|.|.+-++.++-
T Consensus 267 GR~A~QF~~~~~g 279 (287)
T COG2607 267 GRVAWQFIRDLAG 279 (287)
T ss_pred cHhHHHHHHHHHh
Confidence 8999888887753
No 191
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.05 E-value=3.3e-09 Score=129.94 Aligned_cols=206 Identities=16% Similarity=0.177 Sum_probs=134.6
Q ss_pred CCcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
.+|++++|....++.+.+.++. .+....+||+|++||||+++|+++....... . -.++
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~----~-----------------~pfv 380 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA----A-----------------GPYI 380 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc----C-----------------CCeE
Confidence 3799999988777766665543 2333458999999999999999998764311 0 1123
Q ss_pred ccccccccchhHH-HHHHHHhcC-C------CC-CCCceEEEEeCccccCHHHHHHHHHHHhccC-----------CcEE
Q 001748 383 EVDSVRINRSDRV-GSLMKSAFL-P------PF-SSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QHVV 442 (1018)
Q Consensus 383 eIdaas~~~vd~I-ReLie~a~~-~------P~-~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~vi 442 (1018)
.++...... +.+ .+++..... . .+ .+...+|||||++.|....+..|+.+|++.. .++.
T Consensus 381 ~vnc~~~~~-~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~r 459 (638)
T PRK11388 381 AVNCQLYPD-EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVR 459 (638)
T ss_pred EEECCCCCh-HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEE
Confidence 333322211 111 122221100 0 01 2345789999999999999999999998632 1456
Q ss_pred EEEEecCC-------CcchHHHhcCcc--EEEeCCCCh--hHHHHHHHHHHHH----hc--CCCCHHHHHHHHHHc-CCC
Q 001748 443 FVMITPEL-------DKLPRSALSRSQ--KYHFPKIKD--GDIASRLRRICVE----EA--INFDQAALDFIAAKS-NGS 504 (1018)
Q Consensus 443 fILaTn~~-------~kL~~tI~SRcq--~I~F~~ls~--eEI~~~L~~iakk----eg--I~Id~eAL~~LA~~s-~Gn 504 (1018)
+|++|+.. ..+.+.+.-|+. .+.++|+.+ +|+..+++.++.+ .+ +.+++++++.|..+. .||
T Consensus 460 iI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGN 539 (638)
T PRK11388 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGN 539 (638)
T ss_pred EEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCCh
Confidence 77777653 134455666655 567777775 4666555554443 22 468999999999887 899
Q ss_pred HHHHHHHHHHHHhh--CCccCHHHHHHHh
Q 001748 505 IRDAEMLLDQLSLL--GKKITLSLAYELI 531 (1018)
Q Consensus 505 LR~Al~lLeqLsl~--g~~IT~edV~ell 531 (1018)
+|.+.+.++.++.. +..|+.+++...+
T Consensus 540 vreL~~~l~~~~~~~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 540 DFELRSVIENLALSSDNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHHHHHHHHhCCCCeecHHHCchhh
Confidence 99999999998754 4568887765443
No 192
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.03 E-value=6e-09 Score=117.98 Aligned_cols=200 Identities=20% Similarity=0.213 Sum_probs=129.4
Q ss_pred CcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
.|++++|....++.+.+.++. ......+||+|++||||+++|+++...-... ..| ++.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~----~~p-----------------fv~ 62 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRW----QGP-----------------FIS 62 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCcc----CCC-----------------eEE
Confidence 478899988888777776653 2334569999999999999999997543211 111 222
Q ss_pred cccccccchhHHHH-HHHHh-----------cCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------Cc
Q 001748 384 VDSVRINRSDRVGS-LMKSA-----------FLPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QH 440 (1018)
Q Consensus 384 Idaas~~~vd~IRe-Lie~a-----------~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~ 440 (1018)
++...... +.+.. ++... .-....+...+++|||++.|+...+..|+.+|++.. .+
T Consensus 63 v~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 63 LNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred EeCCCCCH-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 22221110 11111 11000 000112345689999999999999999999997632 24
Q ss_pred EEEEEEecCC-------CcchHHHhcCcc--EEEeCCCCh--hHHHHHHHHH----HHHhc----CCCCHHHHHHHHHHc
Q 001748 441 VVFVMITPEL-------DKLPRSALSRSQ--KYHFPKIKD--GDIASRLRRI----CVEEA----INFDQAALDFIAAKS 501 (1018)
Q Consensus 441 vifILaTn~~-------~kL~~tI~SRcq--~I~F~~ls~--eEI~~~L~~i----akkeg----I~Id~eAL~~LA~~s 501 (1018)
+.+|++|+.. ..+.+.+..|+. .+.++++.. +||..++..+ +.+.+ ..+++++++.|..+.
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~ 221 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYR 221 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCC
Confidence 6777776543 245577888874 688888875 5666554443 44444 258999999888765
Q ss_pred -CCCHHHHHHHHHHHHhh--CCccCHHH
Q 001748 502 -NGSIRDAEMLLDQLSLL--GKKITLSL 526 (1018)
Q Consensus 502 -~GnLR~Al~lLeqLsl~--g~~IT~ed 526 (1018)
.||+|++.+.++.++.. +..|+.++
T Consensus 222 WPGNvrEL~~vl~~a~~~~~~~~~~~~~ 249 (326)
T PRK11608 222 WPGNIRELKNVVERSVYRHGTSEYPLDN 249 (326)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCCchhh
Confidence 79999999999998765 34565544
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.02 E-value=3.9e-09 Score=101.16 Aligned_cols=136 Identities=24% Similarity=0.264 Sum_probs=87.8
Q ss_pred cCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccc
Q 001748 310 VGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRI 389 (1018)
Q Consensus 310 VGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~ 389 (1018)
+|++.++..+...+... ..+.++++||+|+|||++++.+++.+... ...+..++....
T Consensus 1 ~~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---------------------~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELFRP---------------------GAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhhcC---------------------CCCeEEEehhhh
Confidence 36778888888887653 34578999999999999999999988411 011222222111
Q ss_pred cchhHHHHHH-----HHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc------CCcEEEEEEecCCC--cchHH
Q 001748 390 NRSDRVGSLM-----KSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI------SQHVVFVMITPELD--KLPRS 456 (1018)
Q Consensus 390 ~~vd~IReLi-----e~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep------p~~vifILaTn~~~--kL~~t 456 (1018)
.......... .............++||||++.+.......++..++.. ...+.+|++++... .+.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 138 (151)
T cd00009 59 LEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRA 138 (151)
T ss_pred hhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChh
Confidence 1101111100 00011112345679999999999777777888888775 35778888887766 78889
Q ss_pred HhcCc-cEEEeC
Q 001748 457 ALSRS-QKYHFP 467 (1018)
Q Consensus 457 I~SRc-q~I~F~ 467 (1018)
+.+|+ ..+.++
T Consensus 139 ~~~r~~~~i~~~ 150 (151)
T cd00009 139 LYDRLDIRIVIP 150 (151)
T ss_pred HHhhhccEeecC
Confidence 99998 566664
No 194
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.01 E-value=6.8e-09 Score=124.21 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=135.0
Q ss_pred CCcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
.+|++++|+...++.+.+.++. ......+||+|++||||+++|+++...-... .. .++
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~----~~-----------------pfv 267 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRR----DF-----------------PFV 267 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcC----CC-----------------CEE
Confidence 4799999999999888888753 3444679999999999999999998653211 11 122
Q ss_pred ccccccccchhHHH-HHHHHh----------cCCCC--CCCceEEEEeCccccCHHHHHHHHHHHhccC-----------
Q 001748 383 EVDSVRINRSDRVG-SLMKSA----------FLPPF--SSRFKIFIIDECQLLHGETWATVLNSLENIS----------- 438 (1018)
Q Consensus 383 eIdaas~~~vd~IR-eLie~a----------~~~P~--~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp----------- 438 (1018)
.++...... ..+. +++... ...+. .+....|||||++.|+...+..|+.+|++..
T Consensus 268 ~inC~~l~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~ 346 (526)
T TIGR02329 268 AINCGAIAE-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVP 346 (526)
T ss_pred EeccccCCh-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceee
Confidence 233222110 1111 111100 00111 1345689999999999999999999998632
Q ss_pred CcEEEEEEecCCC-------cchHHHhcCcc--EEEeCCCCh--hHHHHHHHHH----HHHhcCCCCHHHHHH-------
Q 001748 439 QHVVFVMITPELD-------KLPRSALSRSQ--KYHFPKIKD--GDIASRLRRI----CVEEAINFDQAALDF------- 496 (1018)
Q Consensus 439 ~~vifILaTn~~~-------kL~~tI~SRcq--~I~F~~ls~--eEI~~~L~~i----akkegI~Id~eAL~~------- 496 (1018)
.++.+|++|+..- .+.+.+.-|+. .+.++|+.+ +|+..++... ....++.++++++..
T Consensus 347 ~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~ 426 (526)
T TIGR02329 347 VDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADP 426 (526)
T ss_pred ecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHH
Confidence 2456777776531 34445666654 678888876 5665554444 444567799999876
Q ss_pred HHHH-cCCCHHHHHHHHHHHHhh-----CCccCHHHHHHHh
Q 001748 497 IAAK-SNGSIRDAEMLLDQLSLL-----GKKITLSLAYELI 531 (1018)
Q Consensus 497 LA~~-s~GnLR~Al~lLeqLsl~-----g~~IT~edV~ell 531 (1018)
|..+ ..||+|.+.+.+++++.. +..|+.+++..+.
T Consensus 427 L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 427 LQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred HHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 4443 369999999999998764 3468888766543
No 195
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.99 E-value=8.1e-09 Score=123.78 Aligned_cols=202 Identities=17% Similarity=0.199 Sum_probs=133.3
Q ss_pred CCcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
..|++++|....++.+...++. ......+||+|++||||+++|+++....... ..| ++
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~----~~p-----------------fv 259 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG----KKP-----------------FL 259 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC----CCC-----------------eE
Confidence 4899999988877777666642 3445669999999999999999986543211 111 22
Q ss_pred ccccccccchhHHH-HHHHHhc---------CCC-C-CCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CC
Q 001748 383 EVDSVRINRSDRVG-SLMKSAF---------LPP-F-SSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQ 439 (1018)
Q Consensus 383 eIdaas~~~vd~IR-eLie~a~---------~~P-~-~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~ 439 (1018)
.++.+.... +.+. +++.... ... + .+....|+|||++.|+...+..|+.+|++. +.
T Consensus 260 ~inca~~~~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 338 (520)
T PRK10820 260 ALNCASIPD-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV 338 (520)
T ss_pred EeccccCCH-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceee
Confidence 222222110 1111 1111000 000 0 134568999999999999999999999863 23
Q ss_pred cEEEEEEecCCC-------cchHHHhcCcc--EEEeCCCCh--hHHHHH----HHHHHHHhcC---CCCHHHHHHHHHH-
Q 001748 440 HVVFVMITPELD-------KLPRSALSRSQ--KYHFPKIKD--GDIASR----LRRICVEEAI---NFDQAALDFIAAK- 500 (1018)
Q Consensus 440 ~vifILaTn~~~-------kL~~tI~SRcq--~I~F~~ls~--eEI~~~----L~~iakkegI---~Id~eAL~~LA~~- 500 (1018)
++.+|++|+..- .+.+.+..|+. .+.++++.+ +++..+ |.+.+.+.|. .+++++++.|..+
T Consensus 339 ~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 339 DVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 567777776531 35566777865 677788876 455544 4555555553 6899999999888
Q ss_pred cCCCHHHHHHHHHHHHhh--CCccCHHHH
Q 001748 501 SNGSIRDAEMLLDQLSLL--GKKITLSLA 527 (1018)
Q Consensus 501 s~GnLR~Al~lLeqLsl~--g~~IT~edV 527 (1018)
..||+|.+.+.+++++.. +..|+.+++
T Consensus 419 WPGNvreL~nvl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQLEGYELRPQDI 447 (520)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 689999999999998764 557888775
No 196
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.98 E-value=9.2e-09 Score=107.82 Aligned_cols=196 Identities=18% Similarity=0.222 Sum_probs=108.4
Q ss_pred ccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCC--CCCCCccc--cceecc----CCCCc
Q 001748 309 LVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQ--KPCGLCRE--CALFSS----GRSRD 380 (1018)
Q Consensus 309 LVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~--~PCg~C~s--c~~i~s----G~~~D 380 (1018)
++|.+..++.|.+.+..+. .+.++++||+|+|||++++.+.+.+.-...... .+...... -..+.. .....
T Consensus 1 F~gR~~el~~l~~~l~~~~-~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP-SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELS 79 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCH
T ss_pred CCCHHHHHHHHHHHHHhhc-CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHH
Confidence 5799999999999998763 467899999999999999999998732111000 00000000 000000 00000
Q ss_pred --c-ccccc---------ccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccC------HHHHHHHHHHHhc--cCCc
Q 001748 381 --V-KEVDS---------VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLH------GETWATVLNSLEN--ISQH 440 (1018)
Q Consensus 381 --v-ieIda---------as~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls------~~a~naLLk~LEe--pp~~ 440 (1018)
+ ..+.. ........+..+++.+.. .+..-||||||++.+. ......|.++++. ...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 80 EALGISIPSITLEKISKDLSEDSFSALERLLEKLKK---KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH---CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh---cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 0 00000 000112334444444432 1223799999999998 4556677777776 2346
Q ss_pred EEEEEEecCCC------cchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCC--CHHHHHHHHHHcCCCHHHHH
Q 001748 441 VVFVMITPELD------KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINF--DQAALDFIAAKSNGSIRDAE 509 (1018)
Q Consensus 441 vifILaTn~~~------kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~I--d~eAL~~LA~~s~GnLR~Al 509 (1018)
+.+|++++... .-...+..|+..+.+++++.++..+++...+.+. +.+ ++++++.+...++|.++.+.
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 66777766532 1123466788889999999999999999988766 655 99999999999999998764
No 197
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.7e-09 Score=121.30 Aligned_cols=194 Identities=19% Similarity=0.198 Sum_probs=125.8
Q ss_pred Cccccc--CcH-HHHHHHHHHHHcCCCC----------c--EEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccc
Q 001748 305 FFDELV--GQN-VVVRSLLSAISRGMVT----------S--FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369 (1018)
Q Consensus 305 tFddLV--Gqe-~iv~~L~~aIk~grl~----------~--ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~s 369 (1018)
.|+++- |.+ +.-..++++....-+| | .+|||||||||||.+||.|.+.||...|.
T Consensus 217 ~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePK---------- 286 (744)
T KOG0741|consen 217 NFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPK---------- 286 (744)
T ss_pred ChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCc----------
Confidence 677763 444 4455667776554332 2 49999999999999999999999865443
Q ss_pred cceeccCCCCcccccccccccchhHHHHHHHHhc----CCCCCCCceEEEEeCccccCH-------------HHHHHHHH
Q 001748 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF----LPPFSSRFKIFIIDECQLLHG-------------ETWATVLN 432 (1018)
Q Consensus 370 c~~i~sG~~~DvieIdaas~~~vd~IReLie~a~----~~P~~g~~kVLIIDEaD~Ls~-------------~a~naLLk 432 (1018)
+.+|...--.++. .+.++||.|+..+. .....++-.|||+||+|.+-. ...|.||.
T Consensus 287 ---IVNGPeIL~KYVG----eSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLs 359 (744)
T KOG0741|consen 287 ---IVNGPEILNKYVG----ESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLS 359 (744)
T ss_pred ---ccCcHHHHHHhhc----ccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHH
Confidence 3444333222332 23478999887765 233345678999999998743 37899998
Q ss_pred HHhcc--CCcEEEEEEecCCCcchHHHhcC--cc-EEEeCCCChhHHHHHHH---HHHHHhcCCCCHHHHHHHHHHcCC-
Q 001748 433 SLENI--SQHVVFVMITPELDKLPRSALSR--SQ-KYHFPKIKDGDIASRLR---RICVEEAINFDQAALDFIAAKSNG- 503 (1018)
Q Consensus 433 ~LEep--p~~vifILaTn~~~kL~~tI~SR--cq-~I~F~~ls~eEI~~~L~---~iakkegI~Id~eAL~~LA~~s~G- 503 (1018)
-|+.. -.++.+|..||..+-++++|++- +. .++..-|++.-..++|+ ..+++.++--++-.++.||.++.+
T Consensus 360 KmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNf 439 (744)
T KOG0741|consen 360 KMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNF 439 (744)
T ss_pred hcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCC
Confidence 88753 35889999999999999999984 44 45666666554444433 334444443334446677777654
Q ss_pred CHHHHHHHHHHH
Q 001748 504 SIRDAEMLLDQL 515 (1018)
Q Consensus 504 nLR~Al~lLeqL 515 (1018)
+-..+..++..+
T Consensus 440 SGAEleglVksA 451 (744)
T KOG0741|consen 440 SGAELEGLVKSA 451 (744)
T ss_pred chhHHHHHHHHH
Confidence 334444444433
No 198
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.95 E-value=2.5e-09 Score=132.99 Aligned_cols=198 Identities=21% Similarity=0.271 Sum_probs=147.0
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHcC--------------CCCc-EEEEECCCchHHHHHHHHHHHHHhccCC
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRG--------------MVTS-FYLFHGPRGTGKTSASRIFAAALNCLSL 358 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~g--------------rl~~-ayLf~GPpGTGKTtLAraLAkaL~c~~~ 358 (1018)
...|.+||+|....++.|.......+.+++..- .... +++++||+|+|||+.|.+.|++++.
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~--- 383 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF--- 383 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc---
Confidence 467999999999999999887777777776532 0112 4699999999999999999999863
Q ss_pred CCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCC--------------CCCCCceEEEEeCccccCH
Q 001748 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP--------------PFSSRFKIFIIDECQLLHG 424 (1018)
Q Consensus 359 ~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~--------------P~~g~~kVLIIDEaD~Ls~ 424 (1018)
++.|.++....+...+.+.+..+... ...+.+.|||+||+|.+..
T Consensus 384 ---------------------~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~ 442 (871)
T KOG1968|consen 384 ---------------------KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG 442 (871)
T ss_pred ---------------------ceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc
Confidence 45555554333322222222221110 1123345999999999987
Q ss_pred ---HHHHHHHHHHhccCCcEEEEEEecCCCcc-hHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001748 425 ---ETWATVLNSLENISQHVVFVMITPELDKL-PRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAK 500 (1018)
Q Consensus 425 ---~a~naLLk~LEepp~~vifILaTn~~~kL-~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~ 500 (1018)
..+..|-.+++. ...-+|+++++..-. ..++.+-|.-+.|..|+.+.+..+|..++..+++.|++..++.+...
T Consensus 443 ~dRg~v~~l~~l~~k--s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~ 520 (871)
T KOG1968|consen 443 EDRGGVSKLSSLCKK--SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKL 520 (871)
T ss_pred hhhhhHHHHHHHHHh--ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHh
Confidence 356667777764 344577778776532 34666667899999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHh
Q 001748 501 SNGSIRDAEMLLDQLSL 517 (1018)
Q Consensus 501 s~GnLR~Al~lLeqLsl 517 (1018)
.+||+|..++.|+.+..
T Consensus 521 ~~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 521 SGGDIRQIIMQLQFWSL 537 (871)
T ss_pred cccCHHHHHHHHhhhhc
Confidence 99999999999998844
No 199
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.4e-08 Score=120.50 Aligned_cols=214 Identities=19% Similarity=0.198 Sum_probs=149.2
Q ss_pred ccccCcHHHHHHHHHHHHc------------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceec
Q 001748 307 DELVGQNVVVRSLLSAISR------------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~------------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~ 374 (1018)
+++.|-......++..+.. -+++..+|+|||||+|||.+++++|++.++. ....
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~--------------~~~i 249 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAF--------------LFLI 249 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCce--------------eEec
Confidence 5666766666666655532 2556789999999999999999999988642 1111
Q ss_pred cCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH----------HHHHHHHHHHhccC--CcEE
Q 001748 375 SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG----------ETWATVLNSLENIS--QHVV 442 (1018)
Q Consensus 375 sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~----------~a~naLLk~LEepp--~~vi 442 (1018)
+|... +......+....|..++.+..... +.+++|||+|.+.+ .....|+++++... ..++
T Consensus 250 ~~pel----i~k~~gEte~~LR~~f~~a~k~~~---psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vi 322 (693)
T KOG0730|consen 250 NGPEL----ISKFPGETESNLRKAFAEALKFQV---PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVI 322 (693)
T ss_pred ccHHH----HHhcccchHHHHHHHHHHHhccCC---CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEE
Confidence 22111 111122334668888888763221 56999999999874 24567888888766 6888
Q ss_pred EEEEecCCCcchHHHhc-Ccc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHHhhC
Q 001748 443 FVMITPELDKLPRSALS-RSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSI-RDAEMLLDQLSLLG 519 (1018)
Q Consensus 443 fILaTn~~~kL~~tI~S-Rcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnL-R~Al~lLeqLsl~g 519 (1018)
+|.+|+.++.|.+++++ |+. .+.+.-|+..+..++|+.+.++.+.. ++..+..+|..+.|-. .++..++...++..
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 88899999999999997 776 58888888899999999999888876 6788899999998855 45555555544332
Q ss_pred CccCHHHHHHHhccCChhHHHHH
Q 001748 520 KKITLSLAYELIGIVSDDELLDL 542 (1018)
Q Consensus 520 ~~IT~edV~ellg~v~ee~If~L 542 (1018)
-+=|.+++....+.+....+-+.
T Consensus 402 ~r~~~~~~~~A~~~i~psa~Re~ 424 (693)
T KOG0730|consen 402 TRRTLEIFQEALMGIRPSALREI 424 (693)
T ss_pred hhhhHHHHHHHHhcCCchhhhhe
Confidence 22266666666665544444333
No 200
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.92 E-value=2.6e-08 Score=119.22 Aligned_cols=192 Identities=18% Similarity=0.157 Sum_probs=128.0
Q ss_pred CcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
.+.+++|+...++.+.+.++. ......+||+|++||||+++|+++....... .. .++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~----~~-----------------p~v~ 243 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA----DK-----------------PLVY 243 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC----CC-----------------CeEE
Confidence 578899999999888887765 3344679999999999999999998764311 11 1222
Q ss_pred cccccccchhHHH-HHHHHhc-----------CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------Cc
Q 001748 384 VDSVRINRSDRVG-SLMKSAF-----------LPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QH 440 (1018)
Q Consensus 384 Idaas~~~vd~IR-eLie~a~-----------~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~ 440 (1018)
++...... ..+. +++.... .....+....+||||++.|....+..|+++|++.. .+
T Consensus 244 v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 322 (509)
T PRK05022 244 LNCAALPE-SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVD 322 (509)
T ss_pred EEcccCCh-HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecc
Confidence 22221110 0111 1111000 00112345689999999999999999999998632 25
Q ss_pred EEEEEEecCC-------CcchHHHhcCcc--EEEeCCCCh--hHHHHHHH----HHHHHhc---CCCCHHHHHHHHHHc-
Q 001748 441 VVFVMITPEL-------DKLPRSALSRSQ--KYHFPKIKD--GDIASRLR----RICVEEA---INFDQAALDFIAAKS- 501 (1018)
Q Consensus 441 vifILaTn~~-------~kL~~tI~SRcq--~I~F~~ls~--eEI~~~L~----~iakkeg---I~Id~eAL~~LA~~s- 501 (1018)
+.+|++|+.. ..+.+.+..|+. .|.++++.+ +||..+++ +.+.+.| +.+++++++.|..+.
T Consensus 323 ~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~W 402 (509)
T PRK05022 323 VRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDW 402 (509)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 6788887653 245566777765 577777765 55655544 3333333 569999999988765
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001748 502 NGSIRDAEMLLDQLSLL 518 (1018)
Q Consensus 502 ~GnLR~Al~lLeqLsl~ 518 (1018)
.||+|++.+.++.++..
T Consensus 403 PGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 403 PGNVRELEHVISRAALL 419 (509)
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 69999999999998765
No 201
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.92 E-value=2.7e-08 Score=119.17 Aligned_cols=210 Identities=17% Similarity=0.189 Sum_probs=131.3
Q ss_pred CcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
.|++++|+...++.+++.+.. ......+||+|++||||+.+|+++...+....... .......++.
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~-------------S~r~~~pfv~ 283 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDAR-------------QGKKSHPFVA 283 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhccccccc-------------CccCCCCeEE
Confidence 699999999999988888754 34446799999999999999999987632110000 0000112333
Q ss_pred cccccccchhHHH-HHHHHh---c-------CCCC--CCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CC
Q 001748 384 VDSVRINRSDRVG-SLMKSA---F-------LPPF--SSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQ 439 (1018)
Q Consensus 384 Idaas~~~vd~IR-eLie~a---~-------~~P~--~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~ 439 (1018)
++...... ..+. +++... . ..+. .+....|||||++.|+...|..|+..|++- +.
T Consensus 284 inCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~ 362 (538)
T PRK15424 284 VNCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPV 362 (538)
T ss_pred eecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceecc
Confidence 33332211 1111 111100 0 0011 234568999999999999999999999863 23
Q ss_pred cEEEEEEecCCC-------cchHHHhcCcc--EEEeCCCCh--hHHHHHHHHHHH----HhcCCCCHHHHHHH-------
Q 001748 440 HVVFVMITPELD-------KLPRSALSRSQ--KYHFPKIKD--GDIASRLRRICV----EEAINFDQAALDFI------- 497 (1018)
Q Consensus 440 ~vifILaTn~~~-------kL~~tI~SRcq--~I~F~~ls~--eEI~~~L~~iak----kegI~Id~eAL~~L------- 497 (1018)
++.+|.+|+..- .+.+.+.-|+. .+.++|+.+ +|+..++...++ +.+..++++++..+
T Consensus 363 dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L 442 (538)
T PRK15424 363 DVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLL 442 (538)
T ss_pred ceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHH
Confidence 557888776531 24445556654 677788875 566666555544 35777888877432
Q ss_pred HHH-cCCCHHHHHHHHHHHHhhC-----CccCHHHHH
Q 001748 498 AAK-SNGSIRDAEMLLDQLSLLG-----KKITLSLAY 528 (1018)
Q Consensus 498 A~~-s~GnLR~Al~lLeqLsl~g-----~~IT~edV~ 528 (1018)
..+ ..||+|++.+.+++++.+. ..|+.+++.
T Consensus 443 ~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 443 LHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 222 3699999999999987652 356666553
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2e-08 Score=122.99 Aligned_cols=204 Identities=18% Similarity=0.168 Sum_probs=149.0
Q ss_pred cccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceec
Q 001748 295 WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374 (1018)
Q Consensus 295 ~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~ 374 (1018)
..+.+.-|-..+|.+||.++.++++.+.+.+.+..+. +|.|+||+|||.++..||..+.....+. - .
T Consensus 158 ~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNP-vLiGEpGVGKTAIvEGLA~rIv~g~VP~---------~---L 224 (786)
T COG0542 158 RDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNP-VLVGEPGVGKTAIVEGLAQRIVNGDVPE---------S---L 224 (786)
T ss_pred hhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCC-eEecCCCCCHHHHHHHHHHHHhcCCCCH---------H---H
Confidence 4455666667889999999999999998887665444 7899999999999999999885322211 0 0
Q ss_pred cCC---CCccccc-ccccccc--hhHHHHHHHHhcCCCCCCCceEEEEeCccccC---------HHHHHHHHHHHhccCC
Q 001748 375 SGR---SRDVKEV-DSVRINR--SDRVGSLMKSAFLPPFSSRFKIFIIDECQLLH---------GETWATVLNSLENISQ 439 (1018)
Q Consensus 375 sG~---~~DvieI-daas~~~--vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls---------~~a~naLLk~LEepp~ 439 (1018)
.+. ..|+-.+ .+++..| .+.++.+++++...+ .-|+||||+|.+- .++.|.|...|.. +
T Consensus 225 ~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--G 298 (786)
T COG0542 225 KDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--G 298 (786)
T ss_pred cCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC----CeEEEEechhhhcCCCcccccccchhhhhHHHHhc--C
Confidence 010 0111111 1222222 467888888886543 5699999999874 2366777778876 6
Q ss_pred cEEEEEEecCCC-----cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH----hcCCCCHHHHHHHHHHcCC------C
Q 001748 440 HVVFVMITPELD-----KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE----EAINFDQAALDFIAAKSNG------S 504 (1018)
Q Consensus 440 ~vifILaTn~~~-----kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk----egI~Id~eAL~~LA~~s~G------n 504 (1018)
...+|.+|+..+ .-+++|.+|||.+....|+.++...+|+.+..+ .++.++++|+...+.++.. =
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~L 378 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFL 378 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCC
Confidence 788999998643 346899999999999999999999998877665 5789999999998887753 3
Q ss_pred HHHHHHHHHHHHh
Q 001748 505 IRDAEMLLDQLSL 517 (1018)
Q Consensus 505 LR~Al~lLeqLsl 517 (1018)
+..|+.++|.++.
T Consensus 379 PDKAIDLiDeA~a 391 (786)
T COG0542 379 PDKAIDLLDEAGA 391 (786)
T ss_pred CchHHHHHHHHHH
Confidence 4688999998754
No 203
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.5e-09 Score=114.63 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=99.8
Q ss_pred cccccCcHHHHHHHHHHHH------cCC-------CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce
Q 001748 306 FDELVGQNVVVRSLLSAIS------RGM-------VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 306 FddLVGqe~iv~~L~~aIk------~gr-------l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~ 372 (1018)
|+.++--..+++.|..... ..+ ..+.+|++||||||||++.+++|+.|.-... +..+.++
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~------~~y~~~~- 213 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTN------DRYYKGQ- 213 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeec------Cccccce-
Confidence 4556655555555554321 111 1245999999999999999999999853211 1112222
Q ss_pred eccCCCCcccccccccc------cchhHHHHHHHHhc-CCCCCCCceEEEEeCccccCHH---------------HHHHH
Q 001748 373 FSSGRSRDVKEVDSVRI------NRSDRVGSLMKSAF-LPPFSSRFKIFIIDECQLLHGE---------------TWATV 430 (1018)
Q Consensus 373 i~sG~~~DvieIdaas~------~~vd~IReLie~a~-~~P~~g~~kVLIIDEaD~Ls~~---------------a~naL 430 (1018)
++|++..+. .+-..+..+++.+. ...-.+.--.++|||++.|... +.|+|
T Consensus 214 --------liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNal 285 (423)
T KOG0744|consen 214 --------LIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNAL 285 (423)
T ss_pred --------EEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHH
Confidence 344443221 11123333333332 1111344567889999988532 68999
Q ss_pred HHHHhccCC-cEEEEEEecCC-CcchHHHhcCcc-EEEeCCCChhHHHHHHHHHH
Q 001748 431 LNSLENISQ-HVVFVMITPEL-DKLPRSALSRSQ-KYHFPKIKDGDIASRLRRIC 482 (1018)
Q Consensus 431 Lk~LEepp~-~vifILaTn~~-~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~ia 482 (1018)
|..|+.... +-++|++|.+. +.++.++..|.. +....+|+...+.++++.-.
T Consensus 286 LTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 286 LTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHH
Confidence 999987543 34677777665 589999999998 56677888887877766544
No 204
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.85 E-value=4.3e-08 Score=121.25 Aligned_cols=208 Identities=18% Similarity=0.246 Sum_probs=127.0
Q ss_pred CCcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
..|++++|+...++.+.+.++. ......+||+|++|||||++|++|....... ..|. ..-.|..+..+ ..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~----~~~~-v~i~c~~~~~~-~~~~~ 446 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN----NRRM-VKMNCAAMPAG-LLESD 446 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC----CCCe-EEEecccCChh-Hhhhh
Confidence 4788999999888888777663 2334579999999999999999998754311 1110 00011111000 00000
Q ss_pred ccccc--cccch-hHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEEEEec
Q 001748 383 EVDSV--RINRS-DRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFVMITP 448 (1018)
Q Consensus 383 eIdaa--s~~~v-d~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifILaTn 448 (1018)
.+... ...+. ......++. ....++||||++.|....+..|+..|++. +.++.+|++|+
T Consensus 447 lfg~~~~~~~g~~~~~~g~le~-------a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 519 (686)
T PRK15429 447 LFGHERGAFTGASAQRIGRFEL-------ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 519 (686)
T ss_pred hcCcccccccccccchhhHHHh-------cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCC
Confidence 00000 00000 000111221 23469999999999999999999999763 23567777776
Q ss_pred CCC-------cchHHHhcCcc--EEEeCCCCh--hHHHHHHHH----HHHHhcC---CCCHHHHHHHHHHc-CCCHHHHH
Q 001748 449 ELD-------KLPRSALSRSQ--KYHFPKIKD--GDIASRLRR----ICVEEAI---NFDQAALDFIAAKS-NGSIRDAE 509 (1018)
Q Consensus 449 ~~~-------kL~~tI~SRcq--~I~F~~ls~--eEI~~~L~~----iakkegI---~Id~eAL~~LA~~s-~GnLR~Al 509 (1018)
..- .+...+..|+. .|.++|+.+ +||..+++. ++.+.|. .+++++++.|..+. .||+|.+.
T Consensus 520 ~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~ 599 (686)
T PRK15429 520 RDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELE 599 (686)
T ss_pred CCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHH
Confidence 531 34455666654 577777765 566555444 3444343 47899999887665 79999999
Q ss_pred HHHHHHHhh--CCccCH
Q 001748 510 MLLDQLSLL--GKKITL 524 (1018)
Q Consensus 510 ~lLeqLsl~--g~~IT~ 524 (1018)
+.+++++.. +..|+.
T Consensus 600 ~~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 600 NVIERAVLLTRGNVLQL 616 (686)
T ss_pred HHHHHHHHhCCCCcccc
Confidence 999998764 334554
No 205
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.85 E-value=3.1e-07 Score=107.64 Aligned_cols=203 Identities=21% Similarity=0.255 Sum_probs=134.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
..+.++||+...++.+.+.|.+- ...-.+||+|++||||..+||+|.+.-... ..| ++
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~----~~P-----------------FV 196 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA----KGP-----------------FI 196 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc----CCC-----------------ce
Confidence 36788999999999999888652 223459999999999999999998754321 111 22
Q ss_pred ccccccccchhHHHH-HHHHhc---CCC--------CCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CC
Q 001748 383 EVDSVRINRSDRVGS-LMKSAF---LPP--------FSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQ 439 (1018)
Q Consensus 383 eIdaas~~~vd~IRe-Lie~a~---~~P--------~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~ 439 (1018)
.++..... .+.+.. |+..-. +.. ..+....+|||||..|..+.|..||+.|++- +-
T Consensus 197 avNcaAip-~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~v 275 (464)
T COG2204 197 AVNCAAIP-ENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKV 275 (464)
T ss_pred eeecccCC-HHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccce
Confidence 22221110 011111 111000 000 1234669999999999999999999999863 23
Q ss_pred cEEEEEEecCC-------CcchHHHhcCccEE--EeCCCCh--hHHHHH----HHHHHHHhcC---CCCHHHHHHHHHHc
Q 001748 440 HVVFVMITPEL-------DKLPRSALSRSQKY--HFPKIKD--GDIASR----LRRICVEEAI---NFDQAALDFIAAKS 501 (1018)
Q Consensus 440 ~vifILaTn~~-------~kL~~tI~SRcq~I--~F~~ls~--eEI~~~----L~~iakkegI---~Id~eAL~~LA~~s 501 (1018)
++.+|.+|+.. .++-+.|.-|.-++ .++++.+ ++|... |++.+++.|. .++++|++.|..+.
T Consensus 276 dvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~ 355 (464)
T COG2204 276 DVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYD 355 (464)
T ss_pred eeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 66788888754 25667777787754 4555543 444433 5555555554 68999998877765
Q ss_pred -CCCHHHHHHHHHHHHhh--CCccCHHHHH
Q 001748 502 -NGSIRDAEMLLDQLSLL--GKKITLSLAY 528 (1018)
Q Consensus 502 -~GnLR~Al~lLeqLsl~--g~~IT~edV~ 528 (1018)
.||+|.+.|.++.++.. +..|+.+++.
T Consensus 356 WPGNVREL~N~ver~~il~~~~~i~~~~l~ 385 (464)
T COG2204 356 WPGNVRELENVVERAVILSEGPEIEVEDLP 385 (464)
T ss_pred CChHHHHHHHHHHHHHhcCCccccchhhcc
Confidence 79999999999998765 4568877654
No 206
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.84 E-value=1.5e-07 Score=109.85 Aligned_cols=164 Identities=17% Similarity=0.213 Sum_probs=102.3
Q ss_pred cccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCC---CCccccceeccCCCCccc
Q 001748 306 FDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPC---GLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 306 FddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PC---g~C~sc~~i~sG~~~Dvi 382 (1018)
++++++.+..++.+..++..+ ..++|+||||||||++|+.+|..+.........-+ ..-.....+..|..+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~---~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-- 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK---KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-- 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC--
Confidence 678889999999999988865 46899999999999999999998853211100000 0000000111111111
Q ss_pred ccccccccc-hhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH-HHHHHHHHHhc----------------------cC
Q 001748 383 EVDSVRINR-SDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE-TWATVLNSLEN----------------------IS 438 (1018)
Q Consensus 383 eIdaas~~~-vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~-a~naLLk~LEe----------------------pp 438 (1018)
.....- ..-+.++...+...| ..+.|+||||+++...+ ++..|+..||. .|
T Consensus 249 ---~vgy~~~~G~f~~~~~~A~~~p--~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 249 ---GVGFRRKDGIFYNFCQQAKEQP--EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred ---CCCeEecCchHHHHHHHHHhcc--cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 000000 013445555554433 24579999999998855 46666666652 25
Q ss_pred CcEEEEEEecCCC----cchHHHhcCccEEEeCC-CChhHHHHHHH
Q 001748 439 QHVVFVMITPELD----KLPRSALSRSQKYHFPK-IKDGDIASRLR 479 (1018)
Q Consensus 439 ~~vifILaTn~~~----kL~~tI~SRcq~I~F~~-ls~eEI~~~L~ 479 (1018)
.++.||.+.|..+ .++.++++|+..+++.+ .+...+..++.
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence 5778888877766 57899999999999887 34455555543
No 207
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.6e-08 Score=111.19 Aligned_cols=138 Identities=24% Similarity=0.213 Sum_probs=94.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHc------------CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 303 PNFFDELVGQNVVVRSLLSAISR------------GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 303 P~tFddLVGqe~iv~~L~~aIk~------------grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
--+|+++-|-..++..|+.-|.- =++|..++||||||+|||.+|+++|..+++.-
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf------------- 194 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF------------- 194 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce-------------
Confidence 34899999999999999887642 25677899999999999999999999997531
Q ss_pred ceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH-----------HHHHHHHHHHhcc--
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG-----------ETWATVLNSLENI-- 437 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~LEep-- 437 (1018)
..+.++. . ++.-......-||+.+..+... .+-++++||+|.... ..+..|..++.+.
T Consensus 195 l~v~ss~-l----v~kyiGEsaRlIRemf~yA~~~----~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdg 265 (388)
T KOG0651|consen 195 LKVVSSA-L----VDKYIGESARLIRDMFRYAREV----IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDG 265 (388)
T ss_pred EEeeHhh-h----hhhhcccHHHHHHHHHHHHhhh----CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhcc
Confidence 1111111 1 1111112234577777766521 136999999997642 2444555555432
Q ss_pred ---CCcEEEEEEecCCCcchHHHhcCcc
Q 001748 438 ---SQHVVFVMITPELDKLPRSALSRSQ 462 (1018)
Q Consensus 438 ---p~~vifILaTn~~~kL~~tI~SRcq 462 (1018)
...+.+|++||+++.|+++|++-..
T Consensus 266 fd~l~rVk~ImatNrpdtLdpaLlRpGR 293 (388)
T KOG0651|consen 266 FDTLHRVKTIMATNRPDTLDPALLRPGR 293 (388)
T ss_pred chhcccccEEEecCCccccchhhcCCcc
Confidence 3578999999999999999998443
No 208
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.79 E-value=3.8e-07 Score=109.17 Aligned_cols=176 Identities=19% Similarity=0.236 Sum_probs=120.0
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHH-------
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLM------- 399 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLi------- 399 (1018)
.....+.+.|-||||||.+++.+-+.|........ | ..+++++|++....+..++-..+
T Consensus 420 ~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e-----~---------p~f~yveINgm~l~~~~~~Y~~I~~~lsg~ 485 (767)
T KOG1514|consen 420 GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKE-----L---------PKFDYVEINGLRLASPREIYEKIWEALSGE 485 (767)
T ss_pred CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcC-----C---------CCccEEEEcceeecCHHHHHHHHHHhcccC
Confidence 34458999999999999999999998753221111 1 12455666665544433322211
Q ss_pred -----------HHhcCCC-CCCCceEEEEeCccccCHHHHHHHHHHHhcc---CCcEEEEEEecCCC---c-chHHHhcC
Q 001748 400 -----------KSAFLPP-FSSRFKIFIIDECQLLHGETWATVLNSLENI---SQHVVFVMITPELD---K-LPRSALSR 460 (1018)
Q Consensus 400 -----------e~a~~~P-~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep---p~~vifILaTn~~~---k-L~~tI~SR 460 (1018)
+.-...| .....-||+|||.|.|-..-+..|.++++-| ...+++|.++|..+ + |...+-||
T Consensus 486 ~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSR 565 (767)
T KOG1514|consen 486 RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSR 565 (767)
T ss_pred cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhh
Confidence 1111112 1234569999999999887788888888765 34666666666554 2 22355667
Q ss_pred cc--EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 001748 461 SQ--KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKS---NGSIRDAEMLLDQLSL 517 (1018)
Q Consensus 461 cq--~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s---~GnLR~Al~lLeqLsl 517 (1018)
.. ++.|.|++..++.+++...++.. -.|..+|++++|+.. .||.|.|+..++.++.
T Consensus 566 lg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 566 LGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred ccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 54 89999999999999988777544 357889999888765 5999999999998854
No 209
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.79 E-value=1.1e-08 Score=108.38 Aligned_cols=136 Identities=22% Similarity=0.293 Sum_probs=74.1
Q ss_pred CcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee-ccCCCCcccc
Q 001748 305 FFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF-SSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i-~sG~~~Dvie 383 (1018)
.|.||+||+.+++.|.-+...+ |++||+||||+|||++|+.+...|--...... +.....+ ..|...+...
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~---h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~-----le~~~i~s~~~~~~~~~~ 72 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG---HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEA-----LEVSKIYSVAGLGPDEGL 72 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC-----EEEES-CCCTHHHHHHHHHHCS--CCEECC-----ESS--S-TT---S---EE
T ss_pred ChhhhcCcHHHHHHHHHHHcCC---CCeEEECCCCCCHHHHHHHHHHhCCCCchHHH-----hhhccccccccCCCCCce
Confidence 3899999999999999888754 78999999999999999999976532211110 0000000 0110000000
Q ss_pred ccccccc---chhHHHHHHHHhc-CCC---CCCCceEEEEeCccccCHHHHHHHHHHHhcc-------------CCcEEE
Q 001748 384 VDSVRIN---RSDRVGSLMKSAF-LPP---FSSRFKIFIIDECQLLHGETWATVLNSLENI-------------SQHVVF 443 (1018)
Q Consensus 384 Idaas~~---~vd~IReLie~a~-~~P---~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-------------p~~vif 443 (1018)
+...... .......++.... ..| ..+.+.|+|+||+..+.....++|+..||+- |.+..+
T Consensus 73 ~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~l 152 (206)
T PF01078_consen 73 IRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLL 152 (206)
T ss_dssp EE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEE
T ss_pred ecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEE
Confidence 0000000 0011223332221 111 2346779999999999999999999999853 455666
Q ss_pred EEEec
Q 001748 444 VMITP 448 (1018)
Q Consensus 444 ILaTn 448 (1018)
|.+.|
T Consensus 153 v~a~N 157 (206)
T PF01078_consen 153 VAAMN 157 (206)
T ss_dssp EEEE-
T ss_pred EEEec
Confidence 66654
No 210
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.77 E-value=2.8e-07 Score=103.93 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=98.4
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCc
Q 001748 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD 380 (1018)
Q Consensus 301 yRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~D 380 (1018)
+.|..=.+++-.......+..++..++ .+||.||+|+|||++|+.+|+.++... ..+.-..+.+
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~~---~ilL~G~pGtGKTtla~~lA~~l~~~~-------------~rV~~~~~l~ 102 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYDR---RVMVQGYHGTGKSTHIEQIAARLNWPC-------------VRVNLDSHVS 102 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCC---cEEEEeCCCChHHHHHHHHHHHHCCCe-------------EEEEecCCCC
Confidence 334333455656667777777776543 589999999999999999999997431 1121111111
Q ss_pred cccccccc-c---cchhHHHHHHHHhcCCCC---CCCceEEEEeCccccCHHHHHHHHHHHhc--------------cCC
Q 001748 381 VKEVDSVR-I---NRSDRVGSLMKSAFLPPF---SSRFKIFIIDECQLLHGETWATVLNSLEN--------------ISQ 439 (1018)
Q Consensus 381 vieIdaas-~---~~vd~IReLie~a~~~P~---~g~~kVLIIDEaD~Ls~~a~naLLk~LEe--------------pp~ 439 (1018)
...+-+.. . .+ ..+.. ....|+ .....++++||++...++++++|...||. +.+
T Consensus 103 ~~DliG~~~~~l~~g-~~~~~----f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp 177 (327)
T TIGR01650 103 RIDLVGKDAIVLKDG-KQITE----FRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHP 177 (327)
T ss_pred hhhcCCCceeeccCC-cceeE----EecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCC
Confidence 11111100 0 00 00000 001111 12345799999999999999999988883 122
Q ss_pred cEEEEEEecCCC------------cchHHHhcCcc-EEEeCCCChhHHHHHHHHHH
Q 001748 440 HVVFVMITPELD------------KLPRSALSRSQ-KYHFPKIKDGDIASRLRRIC 482 (1018)
Q Consensus 440 ~vifILaTn~~~------------kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~ia 482 (1018)
...+|.++|-.. .++++.+.|+. ++.+..++.++-.++|...+
T Consensus 178 ~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 178 AFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 344555555321 56899999997 56898888888888876654
No 211
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.77 E-value=2.1e-07 Score=113.45 Aligned_cols=123 Identities=12% Similarity=0.076 Sum_probs=84.4
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHhcc---------------------CCcEEEEEEecCC--CcchHHHhcCcc---E
Q 001748 410 RFKIFIIDECQLLHGETWATVLNSLENI---------------------SQHVVFVMITPEL--DKLPRSALSRSQ---K 463 (1018)
Q Consensus 410 ~~kVLIIDEaD~Ls~~a~naLLk~LEep---------------------p~~vifILaTn~~--~kL~~tI~SRcq---~ 463 (1018)
...+++|||++.|....|..|++.|++- |-++.+|++++.. ..+.+.+++|+. .
T Consensus 217 ngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v 296 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGY 296 (608)
T ss_pred CCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeE
Confidence 3469999999999999999999999642 2255677776643 478899999987 2
Q ss_pred -EEeCC---CChh---HHHHHHHHHHHHhc--CCCCHHHHHHHHHHcC----------CCHHHHHHHHHHHHh---h--C
Q 001748 464 -YHFPK---IKDG---DIASRLRRICVEEA--INFDQAALDFIAAKSN----------GSIRDAEMLLDQLSL---L--G 519 (1018)
Q Consensus 464 -I~F~~---ls~e---EI~~~L~~iakkeg--I~Id~eAL~~LA~~s~----------GnLR~Al~lLeqLsl---~--g 519 (1018)
+.|.. .+.+ ++..++.+.+++.| ..++++|++.|.+.+. .+.|.+.+++..... . .
T Consensus 297 ~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~ 376 (608)
T TIGR00764 297 EVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGK 376 (608)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 44432 2233 34556666666664 3589999988875321 347888888877622 1 2
Q ss_pred CccCHHHHHHHhc
Q 001748 520 KKITLSLAYELIG 532 (1018)
Q Consensus 520 ~~IT~edV~ellg 532 (1018)
..|+.++|++.+.
T Consensus 377 ~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 377 VYVTAEHVLKAKK 389 (608)
T ss_pred ceecHHHHHHHHH
Confidence 4688888877654
No 212
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.76 E-value=1.5e-07 Score=110.28 Aligned_cols=201 Identities=18% Similarity=0.197 Sum_probs=129.5
Q ss_pred CcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
.|.+++|.....+.+...+.. ......++++|++||||+++|+++........ ..++.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~---------------------~~~v~ 195 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKD---------------------KRFVA 195 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCC---------------------CCeEE
Confidence 566788888777777776653 22335688999999999999999987543110 01222
Q ss_pred cccccccchhHHHH-HHHHh--------cC---CCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------Cc
Q 001748 384 VDSVRINRSDRVGS-LMKSA--------FL---PPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QH 440 (1018)
Q Consensus 384 Idaas~~~vd~IRe-Lie~a--------~~---~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~ 440 (1018)
++...... +.+.. ++... .. ....+...++||||++.|+...+..|+++|++-. .+
T Consensus 196 v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (445)
T TIGR02915 196 INCAAIPE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVD 274 (445)
T ss_pred EECCCCCh-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeec
Confidence 32222110 11111 11100 00 0112446799999999999999999999998531 25
Q ss_pred EEEEEEecCC-------CcchHHHhcCcc--EEEeCCCCh--hHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHc-
Q 001748 441 VVFVMITPEL-------DKLPRSALSRSQ--KYHFPKIKD--GDIASRL----RRICVEEA---INFDQAALDFIAAKS- 501 (1018)
Q Consensus 441 vifILaTn~~-------~kL~~tI~SRcq--~I~F~~ls~--eEI~~~L----~~iakkeg---I~Id~eAL~~LA~~s- 501 (1018)
+.+|++|+.. ..+.+.+..|+. .+.++++.. +++...+ .+.+.+.+ ..+++++++.|..+.
T Consensus 275 ~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 354 (445)
T TIGR02915 275 VRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAW 354 (445)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCC
Confidence 6778877654 244555666765 577777765 4554443 33344334 458999999988776
Q ss_pred CCCHHHHHHHHHHHHhh--CCccCHHHH
Q 001748 502 NGSIRDAEMLLDQLSLL--GKKITLSLA 527 (1018)
Q Consensus 502 ~GnLR~Al~lLeqLsl~--g~~IT~edV 527 (1018)
.||+|.+.+.+++++.. +..|+.+++
T Consensus 355 pgNvreL~~~i~~a~~~~~~~~i~~~~l 382 (445)
T TIGR02915 355 PGNVRELENKVKRAVIMAEGNQITAEDL 382 (445)
T ss_pred CChHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 79999999999998765 456777754
No 213
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.74 E-value=1.5e-07 Score=110.53 Aligned_cols=211 Identities=17% Similarity=0.147 Sum_probs=127.7
Q ss_pred CcccccCcHHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCC-CCCCCCCccccceeccCCCCccc
Q 001748 305 FFDELVGQNVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE-DQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~-~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
+|++|+|.......+.+.++.. +....+|+.|++||||..+|+++.+.-...+.+ -...|+.-+.-..- ..-|.
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlE--SELFG-- 318 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLE--SELFG-- 318 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHH--HHHhC--
Confidence 9999999887777777666543 445679999999999999999997753211100 00112222111000 00000
Q ss_pred ccccccccchhH--HHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEEEEecC
Q 001748 383 EVDSVRINRSDR--VGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFVMITPE 449 (1018)
Q Consensus 383 eIdaas~~~vd~--IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifILaTn~ 449 (1018)
+ .....+|... -..+++. +...-+|+||+..|+...|..||+.|++- +.++.+|.+||.
T Consensus 319 y-e~GAFTGA~~~GK~GlfE~-------A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~ 390 (560)
T COG3829 319 Y-EKGAFTGASKGGKPGLFEL-------ANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNR 390 (560)
T ss_pred c-CCccccccccCCCCcceee-------ccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCc
Confidence 0 0000000000 0011111 24568999999999999999999999863 447888888886
Q ss_pred CC-------cchHHHhcCccE--EEeCCCCh--hHHHHHHHHHHH----HhcC---CCCHHHHHHHHHHc-CCCHHHHHH
Q 001748 450 LD-------KLPRSALSRSQK--YHFPKIKD--GDIASRLRRICV----EEAI---NFDQAALDFIAAKS-NGSIRDAEM 510 (1018)
Q Consensus 450 ~~-------kL~~tI~SRcq~--I~F~~ls~--eEI~~~L~~iak----kegI---~Id~eAL~~LA~~s-~GnLR~Al~ 510 (1018)
.- .+-+.|.=|..+ +.++|+.+ +||.......++ +.+. .++++++..|.++. .||+|.+.|
T Consensus 391 nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeN 470 (560)
T COG3829 391 NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELEN 470 (560)
T ss_pred CHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHH
Confidence 42 344445556665 44555543 555555444443 3332 37899998877765 799999999
Q ss_pred HHHHHHhh---CCccCHHHH
Q 001748 511 LLDQLSLL---GKKITLSLA 527 (1018)
Q Consensus 511 lLeqLsl~---g~~IT~edV 527 (1018)
+++.+... +..|+.+++
T Consensus 471 viER~v~~~~~~~~I~~~~l 490 (560)
T COG3829 471 VIERAVNLVESDGLIDADDL 490 (560)
T ss_pred HHHHHHhccCCcceeehhhc
Confidence 99999753 234555543
No 214
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.73 E-value=1.9e-07 Score=110.10 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=130.1
Q ss_pred CcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
.|.+++|.......+...+.. ......+||.|++||||+++|+++....... .. .++.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~----~~-----------------~~i~ 194 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA----KA-----------------PFIA 194 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCC----CC-----------------CeEe
Confidence 467789987777766665543 2233569999999999999999998754311 11 1222
Q ss_pred cccccccchhHHH-HHHHHhc-----------CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------Cc
Q 001748 384 VDSVRINRSDRVG-SLMKSAF-----------LPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QH 440 (1018)
Q Consensus 384 Idaas~~~vd~IR-eLie~a~-----------~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~ 440 (1018)
++...... +.+. .++.... ..........+||||++.|....+..|+++|++.. .+
T Consensus 195 i~c~~~~~-~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~ 273 (469)
T PRK10923 195 LNMAAIPK-DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVD 273 (469)
T ss_pred eeCCCCCH-HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEee
Confidence 22221100 1111 1111000 00112234589999999999999999999998632 24
Q ss_pred EEEEEEecCC-------CcchHHHhcCcc--EEEeCCCCh--hHHHHHHHHHH----HHhcC---CCCHHHHHHHHHHc-
Q 001748 441 VVFVMITPEL-------DKLPRSALSRSQ--KYHFPKIKD--GDIASRLRRIC----VEEAI---NFDQAALDFIAAKS- 501 (1018)
Q Consensus 441 vifILaTn~~-------~kL~~tI~SRcq--~I~F~~ls~--eEI~~~L~~ia----kkegI---~Id~eAL~~LA~~s- 501 (1018)
+.+|++|+.. ..+.+.+..|+. .+.++|+.+ +++..++...+ .+.+. .++++++..|..+.
T Consensus 274 ~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 353 (469)
T PRK10923 274 VRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAW 353 (469)
T ss_pred EEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 5777777643 245677888875 677777765 55655544443 33333 47999999888765
Q ss_pred CCCHHHHHHHHHHHHhh--CCccCHHHHH
Q 001748 502 NGSIRDAEMLLDQLSLL--GKKITLSLAY 528 (1018)
Q Consensus 502 ~GnLR~Al~lLeqLsl~--g~~IT~edV~ 528 (1018)
.||+|.+.+.+++++.. +..|+.+++.
T Consensus 354 pgNv~eL~~~i~~~~~~~~~~~i~~~~l~ 382 (469)
T PRK10923 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLP 382 (469)
T ss_pred CChHHHHHHHHHHHHHhCCCCcccHHHCc
Confidence 69999999999998765 5578888764
No 215
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.73 E-value=7.9e-08 Score=110.76 Aligned_cols=195 Identities=20% Similarity=0.216 Sum_probs=125.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
..|+++||.....+.+.+.++.- ...-.+|++|++||||+.+|+.+...-.. . ...| ++
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r-~--~~~P-----------------FI 134 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSAR-R--AEAP-----------------FI 134 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhc-c--cCCC-----------------EE
Confidence 46899999998888888888762 22245999999999999999999832211 0 1111 22
Q ss_pred ccccccccchhHHHHHHHH---hcCCCC--------CCCceEEEEeCccccCHHHHHHHHHHHhc-----------cCCc
Q 001748 383 EVDSVRINRSDRVGSLMKS---AFLPPF--------SSRFKIFIIDECQLLHGETWATVLNSLEN-----------ISQH 440 (1018)
Q Consensus 383 eIdaas~~~vd~IReLie~---a~~~P~--------~g~~kVLIIDEaD~Ls~~a~naLLk~LEe-----------pp~~ 440 (1018)
.++.+.....-..-+++.. +.+... .+..+.+|+||++.|....+..|+.+||+ .+.+
T Consensus 135 ~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 135 AFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred EEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 2221111000000011110 000000 12467999999999999999999999997 4668
Q ss_pred EEEEEEecCCC--cchH--HHhcCcc--EEEeCCCCh--hHHHHH----HHHHHHHhcCCC---CHHHHHHHHHH-cCCC
Q 001748 441 VVFVMITPELD--KLPR--SALSRSQ--KYHFPKIKD--GDIASR----LRRICVEEAINF---DQAALDFIAAK-SNGS 504 (1018)
Q Consensus 441 vifILaTn~~~--kL~~--tI~SRcq--~I~F~~ls~--eEI~~~----L~~iakkegI~I---d~eAL~~LA~~-s~Gn 504 (1018)
+.+|.+|+..- .+.. ++..|+. .|.++++.+ .|+... +...+++.++.+ .++++..|..+ ..||
T Consensus 215 VRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGN 294 (403)
T COG1221 215 VRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGN 294 (403)
T ss_pred ceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCc
Confidence 88999988652 4555 6766544 688888875 444443 555555656543 45666665544 5899
Q ss_pred HHHHHHHHHHHHhh
Q 001748 505 IRDAEMLLDQLSLL 518 (1018)
Q Consensus 505 LR~Al~lLeqLsl~ 518 (1018)
+|.+.+.++.+++.
T Consensus 295 irELkN~Ve~~~~~ 308 (403)
T COG1221 295 IRELKNLVERAVAQ 308 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.73 E-value=1.4e-07 Score=107.58 Aligned_cols=200 Identities=16% Similarity=0.147 Sum_probs=123.1
Q ss_pred cCCCCcc-cccCcHHHHHHHHHHHHc-----CCCCcEEEEECCCchHHHHHHHHHHHHHhcc-----------------C
Q 001748 301 FRPNFFD-ELVGQNVVVRSLLSAISR-----GMVTSFYLFHGPRGTGKTSASRIFAAALNCL-----------------S 357 (1018)
Q Consensus 301 yRP~tFd-dLVGqe~iv~~L~~aIk~-----grl~~ayLf~GPpGTGKTtLAraLAkaL~c~-----------------~ 357 (1018)
+|-..|+ +++|+++.+..|.++++. +.....++|.||||+|||++|++|++.++.- .
T Consensus 44 ~~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 44 KRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred eeccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 4556788 999999999988888764 2234679999999999999999999998541 0
Q ss_pred CCCC------------------------CCCCCccccceec----cCCCCcc--ccccc------------ccccchhHH
Q 001748 358 LEDQ------------------------KPCGLCRECALFS----SGRSRDV--KEVDS------------VRINRSDRV 395 (1018)
Q Consensus 358 ~~~~------------------------~PCg~C~sc~~i~----sG~~~Dv--ieIda------------as~~~vd~I 395 (1018)
+... ..-..|+.|+..+ .|.-..+ ..+.. .......++
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi 203 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDI 203 (361)
T ss_pred CCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccH
Confidence 1000 0112345555444 1211111 10100 000011123
Q ss_pred HHHHHHhc---------CCC---------CCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEEEE
Q 001748 396 GSLMKSAF---------LPP---------FSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFVMI 446 (1018)
Q Consensus 396 ReLie~a~---------~~P---------~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifILa 446 (1018)
.+|+..+. ..| ..+.+.|+-|+|+.....+.++.||..+++- +-+.+||++
T Consensus 204 ~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~ 283 (361)
T smart00763 204 SELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAH 283 (361)
T ss_pred HHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEe
Confidence 33332111 111 1235679999999999999999999999863 123455666
Q ss_pred ecCC-------CcchHHHhcCccEEEeCCCCh-hHHHHHHHHHHHHh---cCCCCHHHHHHHHHH
Q 001748 447 TPEL-------DKLPRSALSRSQKYHFPKIKD-GDIASRLRRICVEE---AINFDQAALDFIAAK 500 (1018)
Q Consensus 447 Tn~~-------~kL~~tI~SRcq~I~F~~ls~-eEI~~~L~~iakke---gI~Id~eAL~~LA~~ 500 (1018)
+|.. .+..++++.||..+.++-+.. .+=.++.++.+... ++.+.+.+++.+|..
T Consensus 284 sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 284 SNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 6654 266899999999888876554 44455555555533 567888877776654
No 217
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.71 E-value=3e-08 Score=102.55 Aligned_cols=102 Identities=24% Similarity=0.308 Sum_probs=64.3
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccc----hhHHHHHHHHhcCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINR----SDRVGSLMKSAFLP 405 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~----vd~IReLie~a~~~ 405 (1018)
..+||.||+|+|||.+|+++|+.+.- +....+..++...... ...+..++......
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~--------------------~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~ 63 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV--------------------GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGY 63 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT---------------------SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc--------------------CCccchHHHhhhcccccchHHhhhhhhhhcccce
Confidence 57899999999999999999999861 1111222233222211 11222222222110
Q ss_pred CCCCCceEEEEeCccccCH-----------HHHHHHHHHHhcc-----------CCcEEEEEEecCCC
Q 001748 406 PFSSRFKIFIIDECQLLHG-----------ETWATVLNSLENI-----------SQHVVFVMITPELD 451 (1018)
Q Consensus 406 P~~g~~kVLIIDEaD~Ls~-----------~a~naLLk~LEep-----------p~~vifILaTn~~~ 451 (1018)
.......||++||+|+..+ ..++.||+.||+- -.+++||++++--.
T Consensus 64 v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 64 VGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred eeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 0111233999999999999 9999999999852 24678888887544
No 218
>PRK15115 response regulator GlrR; Provisional
Probab=98.70 E-value=4.6e-07 Score=106.05 Aligned_cols=202 Identities=16% Similarity=0.158 Sum_probs=124.5
Q ss_pred cccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccc
Q 001748 308 ELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDS 386 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIda 386 (1018)
.++|.......+...+.. ......++|+|++|+||+++|+++.+...... ..++.++.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~---------------------~~f~~i~c 193 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRAS---------------------KPFIAINC 193 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCC---------------------CCeEEEeC
Confidence 467766555554444332 33345689999999999999999987542110 11222222
Q ss_pred ccccchhHHHH-HHHHhc-----------CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------CcEEE
Q 001748 387 VRINRSDRVGS-LMKSAF-----------LPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QHVVF 443 (1018)
Q Consensus 387 as~~~vd~IRe-Lie~a~-----------~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~vif 443 (1018)
..... +.+.. ++.... .........+|||||++.|+...+..|+.+|++.. .++.+
T Consensus 194 ~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ri 272 (444)
T PRK15115 194 GALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRI 272 (444)
T ss_pred CCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEE
Confidence 22110 11111 111000 01112345699999999999999999999998632 25677
Q ss_pred EEEecCCC-------cchHHHhcCcc--EEEeCCCCh--hHHHHHHHHHH----HHhc---CCCCHHHHHHHHHHc-CCC
Q 001748 444 VMITPELD-------KLPRSALSRSQ--KYHFPKIKD--GDIASRLRRIC----VEEA---INFDQAALDFIAAKS-NGS 504 (1018)
Q Consensus 444 ILaTn~~~-------kL~~tI~SRcq--~I~F~~ls~--eEI~~~L~~ia----kkeg---I~Id~eAL~~LA~~s-~Gn 504 (1018)
|++|+..- .+.+.+..|+. .+.++++.. +++..+++..+ .+.+ ..++++|++.|..+. .||
T Consensus 273 i~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgN 352 (444)
T PRK15115 273 ISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 (444)
T ss_pred EEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCh
Confidence 77776431 23344555544 566666664 45654444443 3333 248999999999988 899
Q ss_pred HHHHHHHHHHHHhh--CCccCHHHHHHHh
Q 001748 505 IRDAEMLLDQLSLL--GKKITLSLAYELI 531 (1018)
Q Consensus 505 LR~Al~lLeqLsl~--g~~IT~edV~ell 531 (1018)
+|.+.+.++.++.. +..|+.+++...+
T Consensus 353 vreL~~~i~~~~~~~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 353 VRQLVNVIEQCVALTSSPVISDALVEQAL 381 (444)
T ss_pred HHHHHHHHHHHHHhCCCCccChhhhhhhh
Confidence 99999999998764 4568877765433
No 219
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=7.3e-08 Score=110.96 Aligned_cols=211 Identities=18% Similarity=0.174 Sum_probs=136.5
Q ss_pred cccccCCCCcccccCcHHHHHHHHHHHHc---CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 297 LSQKFRPNFFDELVGQNVVVRSLLSAISR---GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 297 L~eKyRP~tFddLVGqe~iv~~L~~aIk~---grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
+..-++| ..++|.+.....+++++.. ..-+..+.+.|-||||||.+...+-..+.+.... ||-..-.|..+
T Consensus 143 l~~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~---~~~v~inc~sl 216 (529)
T KOG2227|consen 143 LLNTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS---PVTVYINCTSL 216 (529)
T ss_pred HHhcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc---ceeEEEeeccc
Confidence 4444555 5678988888888888764 3455678999999999999998777776554322 22112222211
Q ss_pred c------cCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhc---cCCcEEEE
Q 001748 374 S------SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLEN---ISQHVVFV 444 (1018)
Q Consensus 374 ~------sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEe---pp~~vifI 444 (1018)
. .+..-.+...-.....+.+..+.+........ ..-|+|+||+|.|....+..|+.++|- |..+.++|
T Consensus 217 ~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k---~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 217 TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSK---FMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhccc---ceEEEEechhhHHhhcccceeeeehhcccCCcceeeee
Confidence 1 11100010000011112222233322222111 235999999999987766666666654 45678888
Q ss_pred EEecCCC---cchHHHhcCcc----EEEeCCCChhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHc---CCCHHHHHHHHH
Q 001748 445 MITPELD---KLPRSALSRSQ----KYHFPKIKDGDIASRLRRICVEEAI-NFDQAALDFIAAKS---NGSIRDAEMLLD 513 (1018)
Q Consensus 445 LaTn~~~---kL~~tI~SRcq----~I~F~~ls~eEI~~~L~~iakkegI-~Id~eAL~~LA~~s---~GnLR~Al~lLe 513 (1018)
.++|..+ ++++.|..|+. .+.|+|++.++|.++|++.+..+.. .+-+.|++++|+.. .||+|.|+..+.
T Consensus 294 GiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 294 GIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred eehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 8888765 78888888653 8999999999999999999887654 34556888888766 489999998888
Q ss_pred HHH
Q 001748 514 QLS 516 (1018)
Q Consensus 514 qLs 516 (1018)
...
T Consensus 374 ~ai 376 (529)
T KOG2227|consen 374 RAI 376 (529)
T ss_pred HHH
Confidence 653
No 220
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.67 E-value=4.4e-07 Score=110.73 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=47.7
Q ss_pred cCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 301 FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 301 yRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
..|..|++++||++++..|..++..++ .++|+||||+|||++|+++++.+.+.
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~~---~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQRR---HVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhCC---eEEEECCCCCcHHHHHHHHHHHcChH
Confidence 346789999999999999999998874 69999999999999999999998765
No 221
>PHA02244 ATPase-like protein
Probab=98.65 E-value=9.3e-07 Score=101.05 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccc-ccccchhHH
Q 001748 317 RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDS-VRINRSDRV 395 (1018)
Q Consensus 317 ~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIda-as~~~vd~I 395 (1018)
..+..++..+. .+||+||+|||||++|+++|+.++... ..+ ++ ..+...+.. ....+.-.-
T Consensus 110 ~ri~r~l~~~~---PVLL~GppGtGKTtLA~aLA~~lg~pf-------------v~I-n~-l~d~~~L~G~i~~~g~~~d 171 (383)
T PHA02244 110 ADIAKIVNANI---PVFLKGGAGSGKNHIAEQIAEALDLDF-------------YFM-NA-IMDEFELKGFIDANGKFHE 171 (383)
T ss_pred HHHHHHHhcCC---CEEEECCCCCCHHHHHHHHHHHhCCCE-------------EEE-ec-ChHHHhhcccccccccccc
Confidence 34445555543 589999999999999999999876421 111 11 000000000 000000000
Q ss_pred HHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhc-----------cCCcEEEEEEecCC-----------Ccc
Q 001748 396 GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLEN-----------ISQHVVFVMITPEL-----------DKL 453 (1018)
Q Consensus 396 ReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEe-----------pp~~vifILaTn~~-----------~kL 453 (1018)
..++..+ ....++||||++.+.++++..|...+++ .+++..+|+++|.. ..+
T Consensus 172 gpLl~A~------~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L 245 (383)
T PHA02244 172 TPFYEAF------KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKI 245 (383)
T ss_pred hHHHHHh------hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCccc
Confidence 0122221 2456999999999999999999998863 23567788887752 467
Q ss_pred hHHHhcCccEEEeCCCCh
Q 001748 454 PRSALSRSQKYHFPKIKD 471 (1018)
Q Consensus 454 ~~tI~SRcq~I~F~~ls~ 471 (1018)
.+++++||..+.|..++.
T Consensus 246 ~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 246 DGATLDRFAPIEFDYDEK 263 (383)
T ss_pred CHHHHhhcEEeeCCCCcH
Confidence 899999999999988764
No 222
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4e-07 Score=100.69 Aligned_cols=193 Identities=20% Similarity=0.276 Sum_probs=120.0
Q ss_pred ccc-ccCcHHHHHHHHHHHH-------cC-C-----C-CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 001748 306 FDE-LVGQNVVVRSLLSAIS-------RG-M-----V-TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 306 Fdd-LVGqe~iv~~L~~aIk-------~g-r-----l-~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc 370 (1018)
+|+ +|||+..++.|.-++- .. . + ...+|+.||.|+|||.+|+.+|+.|+-+
T Consensus 59 Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVP-------------- 124 (408)
T COG1219 59 LDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVP-------------- 124 (408)
T ss_pred hhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCC--------------
Confidence 344 5699998877653321 11 1 1 1459999999999999999999999743
Q ss_pred ceeccCCCCcccccccccccc--hhH-HHHHHHHhcCCCCCCCceEEEEeCccccCH--------------HHHHHHHHH
Q 001748 371 ALFSSGRSRDVKEVDSVRINR--SDR-VGSLMKSAFLPPFSSRFKIFIIDECQLLHG--------------ETWATVLNS 433 (1018)
Q Consensus 371 ~~i~sG~~~DvieIdaas~~~--vd~-IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--------------~a~naLLk~ 433 (1018)
+.+...+. +..++..| +++ +..+++.+.+.-..+.+.+++|||+|.++. ..|.+|||+
T Consensus 125 FaiADATt-----LTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKi 199 (408)
T COG1219 125 FAIADATT-----LTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKI 199 (408)
T ss_pred eeeccccc-----hhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHH
Confidence 12222211 22222222 222 345566665555567788999999999863 379999999
Q ss_pred Hhcc-----C----------------CcEEEEEEecC---------------------C------------------C--
Q 001748 434 LENI-----S----------------QHVVFVMITPE---------------------L------------------D-- 451 (1018)
Q Consensus 434 LEep-----p----------------~~vifILaTn~---------------------~------------------~-- 451 (1018)
+|.. | .++.||....- . +
T Consensus 200 iEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDL 279 (408)
T COG1219 200 IEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDL 279 (408)
T ss_pred HcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHH
Confidence 9952 1 12344433210 0 0
Q ss_pred ---cchHHHhcCcc-EEEeCCCChhHHHHHHHH-----------HHHHhcC--CCCHHHHHHHHHHc---CCCHHHHHHH
Q 001748 452 ---KLPRSALSRSQ-KYHFPKIKDGDIASRLRR-----------ICVEEAI--NFDQAALDFIAAKS---NGSIRDAEML 511 (1018)
Q Consensus 452 ---kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~-----------iakkegI--~Id~eAL~~LA~~s---~GnLR~Al~l 511 (1018)
.|.|.+.-|+. +..+.+++.+++.++|.. .++.+++ .++++||..||+.+ .-..|-+.+.
T Consensus 280 vkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI 359 (408)
T COG1219 280 VKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSI 359 (408)
T ss_pred HHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHH
Confidence 23355566766 456788888888877532 2333444 57999999999876 2356667777
Q ss_pred HHHHHh
Q 001748 512 LDQLSL 517 (1018)
Q Consensus 512 LeqLsl 517 (1018)
++.+.+
T Consensus 360 ~E~~ll 365 (408)
T COG1219 360 IEELLL 365 (408)
T ss_pred HHHHHH
Confidence 777643
No 223
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.62 E-value=6.7e-07 Score=104.94 Aligned_cols=203 Identities=16% Similarity=0.201 Sum_probs=125.7
Q ss_pred CcccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
.+..++|.......+...+.. ......+|++|++||||+++|+++....... . -.++.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~----~-----------------~~~~~ 199 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRA----K-----------------GPFIK 199 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCC----C-----------------CCeEE
Confidence 345688877666666555543 2334568999999999999999997643211 0 01222
Q ss_pred cccccccchhHHHH-HHHHhc-----------CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------Cc
Q 001748 384 VDSVRINRSDRVGS-LMKSAF-----------LPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QH 440 (1018)
Q Consensus 384 Idaas~~~vd~IRe-Lie~a~-----------~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~ 440 (1018)
++...... +.+.. ++.... .....+...++||||++.|....+..|+.+|++.. .+
T Consensus 200 i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~ 278 (457)
T PRK11361 200 VNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVD 278 (457)
T ss_pred EECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeec
Confidence 22222110 11111 111000 00112345699999999999999999999998631 24
Q ss_pred EEEEEEecCC-------CcchHHHhcCcc--EEEeCCCCh--hHHHHH----HHHHHHHhc---CCCCHHHHHHHHHHc-
Q 001748 441 VVFVMITPEL-------DKLPRSALSRSQ--KYHFPKIKD--GDIASR----LRRICVEEA---INFDQAALDFIAAKS- 501 (1018)
Q Consensus 441 vifILaTn~~-------~kL~~tI~SRcq--~I~F~~ls~--eEI~~~----L~~iakkeg---I~Id~eAL~~LA~~s- 501 (1018)
+.+|++|+.. ..+.+.+..|+. .+.++++.. +++..+ |.+...+.+ +.+++++++.|..+.
T Consensus 279 ~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 358 (457)
T PRK11361 279 IRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSW 358 (457)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCC
Confidence 6777777643 134455665654 566667663 455544 333333333 368999999888766
Q ss_pred CCCHHHHHHHHHHHHhh--CCccCHHHHHH
Q 001748 502 NGSIRDAEMLLDQLSLL--GKKITLSLAYE 529 (1018)
Q Consensus 502 ~GnLR~Al~lLeqLsl~--g~~IT~edV~e 529 (1018)
.||+|.+.+.++.++.. +..|+.+++..
T Consensus 359 pgNv~eL~~~~~~~~~~~~~~~i~~~~l~~ 388 (457)
T PRK11361 359 PGNIRELSNVIERAVVMNSGPIIFSEDLPP 388 (457)
T ss_pred CCcHHHHHHHHHHHHHhCCCCcccHHHChH
Confidence 79999999999998764 45678776643
No 224
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.61 E-value=3e-07 Score=104.10 Aligned_cols=146 Identities=23% Similarity=0.246 Sum_probs=92.3
Q ss_pred ccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccc
Q 001748 307 DELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDS 386 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIda 386 (1018)
..++|++.++..+..++..|+ ++||.||||+|||++|+.+|+.++... ..+.-. .+ +.+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~---~vll~G~PG~gKT~la~~lA~~l~~~~-------------~~i~~t--~~---l~p 82 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG---HVLLEGPPGVGKTLLARALARALGLPF-------------VRIQCT--PD---LLP 82 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC---CEEEECCCCccHHHHHHHHHHHhCCCe-------------EEEecC--CC---CCH
Confidence 347899999998888888775 589999999999999999999997321 111100 11 111
Q ss_pred ccccchhHHHHHH---HH--hcCCCCCC-CceEEEEeCccccCHHHHHHHHHHHhcc-------C----CcEEEEEEecC
Q 001748 387 VRINRSDRVGSLM---KS--AFLPPFSS-RFKIFIIDECQLLHGETWATVLNSLENI-------S----QHVVFVMITPE 449 (1018)
Q Consensus 387 as~~~vd~IReLi---e~--a~~~P~~g-~~kVLIIDEaD~Ls~~a~naLLk~LEep-------p----~~vifILaTn~ 449 (1018)
....+...+.... .. ....|... -..|+++||+++..+..+++|+..|++. . +...+|++|.+
T Consensus 83 ~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~N 162 (329)
T COG0714 83 SDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQN 162 (329)
T ss_pred HHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccC
Confidence 1112222222221 11 11222211 1149999999999999999999999872 1 12234455533
Q ss_pred ------CCcchHHHhcCc-cEEEeCCCChhH
Q 001748 450 ------LDKLPRSALSRS-QKYHFPKIKDGD 473 (1018)
Q Consensus 450 ------~~kL~~tI~SRc-q~I~F~~ls~eE 473 (1018)
...++++++.|| ..+.+..+..++
T Consensus 163 p~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 163 PGEYEGTYPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred ccccCCCcCCCHHHHhhEEEEEecCCCCchH
Confidence 236899999999 567777774443
No 225
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.61 E-value=9.5e-07 Score=103.92 Aligned_cols=203 Identities=20% Similarity=0.214 Sum_probs=129.3
Q ss_pred cccccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccc
Q 001748 306 FDELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEV 384 (1018)
Q Consensus 306 FddLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieI 384 (1018)
+..++|.......+...+.. ......+++.|++||||+++|+++....... .. .++.+
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~----~~-----------------~~~~~ 191 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA----NG-----------------PFIAL 191 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC----CC-----------------CeEEE
Confidence 34578877666666655532 2223468999999999999999998754211 01 12222
Q ss_pred ccccccchhHHHHHH-HHhc-----------CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------CcE
Q 001748 385 DSVRINRSDRVGSLM-KSAF-----------LPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QHV 441 (1018)
Q Consensus 385 daas~~~vd~IReLi-e~a~-----------~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~v 441 (1018)
+..... .+.+...+ .... .....+....|+|||++.|+...+..|+++|++.. .++
T Consensus 192 ~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ 270 (463)
T TIGR01818 192 NMAAIP-KDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDV 270 (463)
T ss_pred eCCCCC-HHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeee
Confidence 221110 01111111 0000 00012235689999999999999999999998632 245
Q ss_pred EEEEEecCC-------CcchHHHhcCcc--EEEeCCCC--hhHHHHHHHHHH----HHhc---CCCCHHHHHHHHHHc-C
Q 001748 442 VFVMITPEL-------DKLPRSALSRSQ--KYHFPKIK--DGDIASRLRRIC----VEEA---INFDQAALDFIAAKS-N 502 (1018)
Q Consensus 442 ifILaTn~~-------~kL~~tI~SRcq--~I~F~~ls--~eEI~~~L~~ia----kkeg---I~Id~eAL~~LA~~s-~ 502 (1018)
.+|++|+.. ..+.+.+..|+. .+.++++. .+++..++..++ .+.+ ..+++++++.|..+. .
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wp 350 (463)
T TIGR01818 271 RIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWP 350 (463)
T ss_pred EEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCC
Confidence 677777543 245567777765 67788887 567766655443 3334 468999999988775 6
Q ss_pred CCHHHHHHHHHHHHhh--CCccCHHHHHHH
Q 001748 503 GSIRDAEMLLDQLSLL--GKKITLSLAYEL 530 (1018)
Q Consensus 503 GnLR~Al~lLeqLsl~--g~~IT~edV~el 530 (1018)
||+|.+.+.+++++.. +..|+.+++...
T Consensus 351 gNvreL~~~~~~~~~~~~~~~i~~~~l~~~ 380 (463)
T TIGR01818 351 GNVRQLENLCRWLTVMASGDEVLVSDLPAE 380 (463)
T ss_pred ChHHHHHHHHHHHHHhCCCCcccHHhchHH
Confidence 9999999999998765 456888877543
No 226
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.8e-07 Score=108.83 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=124.3
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCC
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS 408 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~ 408 (1018)
+.++||+||+|+|||.+++++++++..... | -+.++.+. .......+.|...+..+......
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~-----~-----hv~~v~Cs--------~l~~~~~e~iQk~l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLI-----A-----HVEIVSCS--------TLDGSSLEKIQKFLNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccc-----e-----EEEEEech--------hccchhHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999998852100 0 01111111 11222345555555443322222
Q ss_pred CCceEEEEeCccccCHH-----------------HHHHHHHHHhccCCcEEEEEEecCCCcchHHHhc--Ccc-EEEeCC
Q 001748 409 SRFKIFIIDECQLLHGE-----------------TWATVLNSLENISQHVVFVMITPELDKLPRSALS--RSQ-KYHFPK 468 (1018)
Q Consensus 409 g~~kVLIIDEaD~Ls~~-----------------a~naLLk~LEepp~~vifILaTn~~~kL~~tI~S--Rcq-~I~F~~ 468 (1018)
-.+.||++|+.|.|... ..+.+.+..-.....+.||.+......+.+.|.+ +++ ++.++.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 33469999999988641 1222222223334456677777777788888776 455 688999
Q ss_pred CChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhh---------CCccCHHHHHHHhccC
Q 001748 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEMLLDQLSLL---------GKKITLSLAYELIGIV 534 (1018)
Q Consensus 469 ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~lLeqLsl~---------g~~IT~edV~ellg~v 534 (1018)
|...+..++|..++.+....+..+.+++++..++| .++++....+++... .+-+|.++..+.+...
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F 648 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDF 648 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhc
Confidence 99999999999999998888888899999999998 788888888887432 1245666665555443
No 227
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.58 E-value=1.8e-06 Score=96.13 Aligned_cols=210 Identities=17% Similarity=0.160 Sum_probs=117.5
Q ss_pred cCcHH---HHHHHHHHHHcCCC--CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccc
Q 001748 310 VGQNV---VVRSLLSAISRGMV--TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEV 384 (1018)
Q Consensus 310 VGqe~---iv~~L~~aIk~grl--~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieI 384 (1018)
||... +.+.|...+...+. .+.+||+|++|.|||++++.|.+.-..... .-...|+....- .-..++...+
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d---~~~~~~PVv~vq-~P~~p~~~~~ 112 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD---EDAERIPVVYVQ-MPPEPDERRF 112 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC---CCCccccEEEEe-cCCCCChHHH
Confidence 66444 44555555554332 367999999999999999999986532111 111122222211 1122222111
Q ss_pred c--------cc--cccchh----HHHHHHHHhcCCCCCCCceEEEEeCccccCHH---HHHHHHHHHhccC--CcEEEEE
Q 001748 385 D--------SV--RINRSD----RVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE---TWATVLNSLENIS--QHVVFVM 445 (1018)
Q Consensus 385 d--------aa--s~~~vd----~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~---a~naLLk~LEepp--~~vifIL 445 (1018)
- +. ...... .+..++..+ +.+++||||+|.+... .+..+++.|.... -.+-+|+
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~-------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~ 185 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRL-------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVG 185 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHc-------CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEE
Confidence 0 00 001111 222333333 4579999999986422 2333333332221 1233444
Q ss_pred EecCCC----cchHHHhcCccEEEeCCCChh-HHHHHHHHHHHHhcC----CC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 446 ITPELD----KLPRSALSRSQKYHFPKIKDG-DIASRLRRICVEEAI----NF-DQAALDFIAAKSNGSIRDAEMLLDQL 515 (1018)
Q Consensus 446 aTn~~~----kL~~tI~SRcq~I~F~~ls~e-EI~~~L~~iakkegI----~I-d~eAL~~LA~~s~GnLR~Al~lLeqL 515 (1018)
+.+..- .-++.+.+|+..+.+++...+ +....|...-....+ .+ +++...+|...++|.+..+..+|..+
T Consensus 186 vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~a 265 (302)
T PF05621_consen 186 VGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAA 265 (302)
T ss_pred eccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 433221 346889999999999988864 444444443332211 23 45666899999999999999999988
Q ss_pred Hhh-----CCccCHHHHHHH
Q 001748 516 SLL-----GKKITLSLAYEL 530 (1018)
Q Consensus 516 sl~-----g~~IT~edV~el 530 (1018)
+.. .+.||.+.+..+
T Consensus 266 A~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 266 AIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHhcCCceecHHHHhhC
Confidence 643 357888877764
No 228
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.57 E-value=6.3e-07 Score=102.87 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=111.6
Q ss_pred CcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh-------ccCCC-CCCCCCCccccceeccC
Q 001748 305 FFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN-------CLSLE-DQKPCGLCRECALFSSG 376 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~-------c~~~~-~~~PCg~C~sc~~i~sG 376 (1018)
.|.-++||+.....|.-.....++. .+||.|++||||||++|+||..|- |...- ...|-..|..|+.-...
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~ig-gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIG-GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccc-eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccc
Confidence 4777999999998877654445553 468999999999999999999873 22211 23454577777755211
Q ss_pred C-CCc-------ccccc--c--ccccchhHHHHHHHH-hc-CCC---CCCCceEEEEeCccccCHHHHHHHHHHHhcc--
Q 001748 377 R-SRD-------VKEVD--S--VRINRSDRVGSLMKS-AF-LPP---FSSRFKIFIIDECQLLHGETWATVLNSLENI-- 437 (1018)
Q Consensus 377 ~-~~D-------vieId--a--as~~~vd~IReLie~-a~-~~P---~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-- 437 (1018)
. ... +..+. + ....|.=++...++. .. +.| ..+++.|++|||+..|....+++||..+++-
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCc
Confidence 1 000 00000 0 000111112222221 11 222 3567889999999999999999999999872
Q ss_pred -----------CCcEEEEEEecCC-CcchHHHhcCcc-EEEeCCCC-hhHHHHHHHHHHHH
Q 001748 438 -----------SQHVVFVMITPEL-DKLPRSALSRSQ-KYHFPKIK-DGDIASRLRRICVE 484 (1018)
Q Consensus 438 -----------p~~vifILaTn~~-~kL~~tI~SRcq-~I~F~~ls-~eEI~~~L~~iakk 484 (1018)
|.++++|.+.|-. ..|-+.|+.||. .++...+. .++...++.+.+.-
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 3445555555432 278999999976 67776555 45566666665544
No 229
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.56 E-value=1.5e-06 Score=104.29 Aligned_cols=157 Identities=11% Similarity=0.195 Sum_probs=92.1
Q ss_pred ccccCcHHHHHHHHHHHHcCCCC-----------cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceecc
Q 001748 307 DELVGQNVVVRSLLSAISRGMVT-----------SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS 375 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~grl~-----------~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~s 375 (1018)
-.+.|++.++..|.-++-.|... -++||+|+||||||++|+.+++..... .+..
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~---------------~~~~ 267 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA---------------VYTT 267 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc---------------eEcC
Confidence 45789999988888777665211 269999999999999999999875311 0111
Q ss_pred CCCCcccccccccccchhHHHHHHHHhcC-CCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-------------CCcE
Q 001748 376 GRSRDVKEVDSVRINRSDRVGSLMKSAFL-PPFSSRFKIFIIDECQLLHGETWATVLNSLENI-------------SQHV 441 (1018)
Q Consensus 376 G~~~DvieIdaas~~~vd~IReLie~a~~-~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-------------p~~v 441 (1018)
|...+...+.+....... -.+. .+.. .-..+...+++|||++.|....+.+|+..||+. +..+
T Consensus 268 ~~~~~~~~l~~~~~~~~~-~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 268 GKGSSAVGLTAAVTRDPE-TREF--TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred CCCCCcCCccccceEccC-cceE--EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 111111111000000000 0000 0000 012345679999999999999999999999863 2344
Q ss_pred EEEEEecCCC-------------cchHHHhcCcc-EEEe-CCCChhHHHHHHHHH
Q 001748 442 VFVMITPELD-------------KLPRSALSRSQ-KYHF-PKIKDGDIASRLRRI 481 (1018)
Q Consensus 442 ifILaTn~~~-------------kL~~tI~SRcq-~I~F-~~ls~eEI~~~L~~i 481 (1018)
.+|.++|-.. .+++++++||. .+.+ ..++.+.-..++..+
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i 399 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHV 399 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHH
Confidence 5555555321 58899999996 3333 445554444444443
No 230
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.56 E-value=1.2e-06 Score=104.42 Aligned_cols=156 Identities=21% Similarity=0.232 Sum_probs=95.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceecc--CC----
Q 001748 304 NFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSS--GR---- 377 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~s--G~---- 377 (1018)
..|++++||..+++.+.-++..+ +.++|.||+|+|||++|+.++..+...... - +-.+..+.+ |.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g---~~vlliG~pGsGKTtlar~l~~llp~~~~~---~---~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG---HNLLLFGPPGSGKTMLASRLQGILPPLTNE---E---AIETARIWSLVGKLIDR 259 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC---CEEEEEecCCCCHHHHHHHHhcccCCCCCc---E---EEeccccccchhhhccc
Confidence 37999999999998888877654 689999999999999999998765321100 0 000000000 00
Q ss_pred ----CCcccccccccccchhHHHHHHHHhc-CCC---CCCCceEEEEeCccccCHHHHHHHHHHHhcc------------
Q 001748 378 ----SRDVKEVDSVRINRSDRVGSLMKSAF-LPP---FSSRFKIFIIDECQLLHGETWATVLNSLENI------------ 437 (1018)
Q Consensus 378 ----~~DvieIdaas~~~vd~IReLie~a~-~~P---~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep------------ 437 (1018)
...+....... ....++.... ..| ..+...|+||||++.|....++.|+..||+.
T Consensus 260 ~~~~~~Pf~~p~~s~-----s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~ 334 (499)
T TIGR00368 260 KQIKQRPFRSPHHSA-----SKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF 334 (499)
T ss_pred cccccCCcccccccc-----chhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCccee
Confidence 00000000000 0000000000 000 1234579999999999999999999999863
Q ss_pred -CCcEEEEEEecCC-----------------------CcchHHHhcCcc-EEEeCCCChhH
Q 001748 438 -SQHVVFVMITPEL-----------------------DKLPRSALSRSQ-KYHFPKIKDGD 473 (1018)
Q Consensus 438 -p~~vifILaTn~~-----------------------~kL~~tI~SRcq-~I~F~~ls~eE 473 (1018)
+.++.+|.++|.- .++..+|+.|+. .+.+++++.++
T Consensus 335 ~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 335 YPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred ccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 3467777777631 157788999998 67788775544
No 231
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.54 E-value=5.1e-08 Score=96.04 Aligned_cols=114 Identities=23% Similarity=0.228 Sum_probs=65.6
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc-cc-cchhHHHHHHHHhcCCCCC
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV-RI-NRSDRVGSLMKSAFLPPFS 408 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa-s~-~~vd~IReLie~a~~~P~~ 408 (1018)
.+||+||+|+|||++|+.+|+.++.. +..+.-....+..++-.. .. .+... . ..-......
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~-------------~~~i~~~~~~~~~dl~g~~~~~~~~~~---~-~~~~l~~a~ 63 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRP-------------VIRINCSSDTTEEDLIGSYDPSNGQFE---F-KDGPLVRAM 63 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCE-------------EEEEE-TTTSTHHHHHCEEET-TTTTC---E-EE-CCCTTH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcc-------------eEEEEeccccccccceeeeeecccccc---c-ccccccccc
Confidence 37999999999999999999998422 111111111111111000 00 00000 0 000000011
Q ss_pred CCceEEEEeCccccCHHHHHHHHHHHhcc-------------CC------cEEEEEEecCCC----cchHHHhcCc
Q 001748 409 SRFKIFIIDECQLLHGETWATVLNSLENI-------------SQ------HVVFVMITPELD----KLPRSALSRS 461 (1018)
Q Consensus 409 g~~kVLIIDEaD~Ls~~a~naLLk~LEep-------------p~------~vifILaTn~~~----kL~~tI~SRc 461 (1018)
.+..+++|||++....++++.|+..+++- +. +..+|+++|... .+.+++++||
T Consensus 64 ~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 64 RKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp HEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 25679999999999999999999999742 11 267788887776 7899999996
No 232
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.49 E-value=2.4e-06 Score=99.73 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=125.5
Q ss_pred cccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccc
Q 001748 308 ELVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDS 386 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIda 386 (1018)
.++|.......+...+.. ....+.++++|++|+||+++|+++....... ...++.++.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~---------------------~~~~i~~~c 198 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS---------------------EKPLVTLNC 198 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCC---------------------CCCeeeeeC
Confidence 467766666666555432 2334668999999999999999997654211 111333333
Q ss_pred ccccchhHHHHHH-HHhc-----------CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-----------CcEEE
Q 001748 387 VRINRSDRVGSLM-KSAF-----------LPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-----------QHVVF 443 (1018)
Q Consensus 387 as~~~vd~IReLi-e~a~-----------~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-----------~~vif 443 (1018)
..... +.+...+ .... .........++||||++.|....+..|+..+++.. .++.+
T Consensus 199 ~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (441)
T PRK10365 199 AALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRL 277 (441)
T ss_pred CCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEE
Confidence 32211 1122111 1000 00122346789999999999999999999998632 24567
Q ss_pred EEEecCCC-------cchHHHhcCcc--EEEeCCCCh--hHHHHHHHHHHH----Hhc---CCCCHHHHHHHHHHc-CCC
Q 001748 444 VMITPELD-------KLPRSALSRSQ--KYHFPKIKD--GDIASRLRRICV----EEA---INFDQAALDFIAAKS-NGS 504 (1018)
Q Consensus 444 ILaTn~~~-------kL~~tI~SRcq--~I~F~~ls~--eEI~~~L~~iak----keg---I~Id~eAL~~LA~~s-~Gn 504 (1018)
|++|+... .+.+.+..|+. .+.++++.+ +++...++..+. +.+ ..+++++++.|..+. .||
T Consensus 278 i~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (441)
T PRK10365 278 IAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 (441)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCH
Confidence 77776542 34455555655 456666654 355555444433 333 358999999999887 899
Q ss_pred HHHHHHHHHHHHhh--CCccCHHHHHH
Q 001748 505 IRDAEMLLDQLSLL--GKKITLSLAYE 529 (1018)
Q Consensus 505 LR~Al~lLeqLsl~--g~~IT~edV~e 529 (1018)
+|.+.+.+++++.. +..|+.+++..
T Consensus 358 ~reL~~~~~~~~~~~~~~~i~~~~l~~ 384 (441)
T PRK10365 358 IRELENAVERAVVLLTGEYISERELPL 384 (441)
T ss_pred HHHHHHHHHHHHHhCCCCccchHhCch
Confidence 99999999998654 55788777654
No 233
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.48 E-value=1.1e-06 Score=82.97 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=67.5
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcc---------cccccccccchhHHHHHH
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDV---------KEVDSVRINRSDRVGSLM 399 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dv---------ieIdaas~~~vd~IReLi 399 (1018)
.+.++|+||+|+|||++++.+|..+.... ..+..+........ .............++.++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLAL 71 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC----------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHH
Confidence 35799999999999999999999886432 01111111111110 000111122334555566
Q ss_pred HHhcCCCCCCCceEEEEeCccccCHHHHHHHHH--------HHhccCCcEEEEEEecC-CCcchHHHhcCcc
Q 001748 400 KSAFLPPFSSRFKIFIIDECQLLHGETWATVLN--------SLENISQHVVFVMITPE-LDKLPRSALSRSQ 462 (1018)
Q Consensus 400 e~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk--------~LEepp~~vifILaTn~-~~kL~~tI~SRcq 462 (1018)
+.+...+ ..||||||++.+.......+.. ..........+|++++. .......+..|..
T Consensus 72 ~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 139 (148)
T smart00382 72 ALARKLK----PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFD 139 (148)
T ss_pred HHHHhcC----CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccc
Confidence 6654333 5799999999998765554432 22333456677777774 2233444444444
No 234
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.46 E-value=3e-06 Score=98.70 Aligned_cols=201 Identities=19% Similarity=0.211 Sum_probs=128.4
Q ss_pred CcccccCcHHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVGQNVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
.+.++||+...+.++...|+-= +-...+||.|+.||||..+||+|.+.-.. ...| ++.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R----~~kP-----------------fV~ 279 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR----RDKP-----------------FVK 279 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc----cCCC-----------------cee
Confidence 5789999999999998887632 22356999999999999999999875321 1111 222
Q ss_pred cccccccchhHHHHHHHH-------h-cCCC---CCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcE
Q 001748 384 VDSVRINRSDRVGSLMKS-------A-FLPP---FSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHV 441 (1018)
Q Consensus 384 Idaas~~~vd~IReLie~-------a-~~~P---~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~v 441 (1018)
++.+.....=-=-+++.. + ...+ -.++..-+|+|||..|....|..||+.|++- .-+|
T Consensus 280 ~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDV 359 (550)
T COG3604 280 LNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDV 359 (550)
T ss_pred eeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEE
Confidence 221111000000011110 0 0000 0134568999999999999999999999863 2367
Q ss_pred EEEEEecCC-------CcchHHHhcCccEEEe--CCCCh--hHHHH----HHHHHHHHhcC---CCCHHHHHHHHHHc-C
Q 001748 442 VFVMITPEL-------DKLPRSALSRSQKYHF--PKIKD--GDIAS----RLRRICVEEAI---NFDQAALDFIAAKS-N 502 (1018)
Q Consensus 442 ifILaTn~~-------~kL~~tI~SRcq~I~F--~~ls~--eEI~~----~L~~iakkegI---~Id~eAL~~LA~~s-~ 502 (1018)
.+|.+||.. .++-..+.-|..+|.+ +|+.+ ++|.- ++++...+.|. .++++|++.|..+. .
T Consensus 360 RiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wP 439 (550)
T COG3604 360 RVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWP 439 (550)
T ss_pred EEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCC
Confidence 888888863 2455566667776554 44433 33332 34555555554 68999999988765 6
Q ss_pred CCHHHHHHHHHHHHhhC-CccCHHH
Q 001748 503 GSIRDAEMLLDQLSLLG-KKITLSL 526 (1018)
Q Consensus 503 GnLR~Al~lLeqLsl~g-~~IT~ed 526 (1018)
||+|.+.+.++..++.. +.++.++
T Consensus 440 GNVRELen~veRavlla~~~~~~~d 464 (550)
T COG3604 440 GNVRELENVVERAVLLAGRLTRRGD 464 (550)
T ss_pred CcHHHHHHHHHHHHHHhcccCCCcc
Confidence 99999999999987653 4444443
No 235
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.7e-07 Score=105.22 Aligned_cols=47 Identities=34% Similarity=0.444 Sum_probs=41.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHH
Q 001748 304 NFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..|.|++||+..++.|.-+...| |++||+||||||||.+|+.+...|
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcC---CcEEEecCCCCchHHhhhhhcccC
Confidence 37999999999999999888766 789999999999999999887654
No 236
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.39 E-value=5.5e-06 Score=100.97 Aligned_cols=185 Identities=15% Similarity=0.138 Sum_probs=106.7
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHH----hcCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKS----AFLP 405 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~----a~~~ 405 (1018)
.++||.|++|||||++|++|++.+....+....|+ +...+ ...+.-.+..-+.. +...
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~-----------~~t~d-------~L~G~idl~~~~~~g~~~~~~G 78 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPL-----------GVTED-------RLIGGIDVEESLAGGQRVTQPG 78 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCc-----------ccchh-------hcccchhhhhhhhcCcccCCCC
Confidence 56899999999999999999997753211000000 00000 00000011110100 1111
Q ss_pred CC-CCCceEEEEeCccccCHHHHHHHHHHHhccC-------------CcEEEEEEecCCC---cchHHHhcCccE-EEeC
Q 001748 406 PF-SSRFKIFIIDECQLLHGETWATVLNSLENIS-------------QHVVFVMITPELD---KLPRSALSRSQK-YHFP 467 (1018)
Q Consensus 406 P~-~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-------------~~vifILaTn~~~---kL~~tI~SRcq~-I~F~ 467 (1018)
+. .....+++|||++.|....++.|+..|++-. ..+.+|.+++-.+ .+++++..|+.. +.+.
T Consensus 79 ~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~ 158 (589)
T TIGR02031 79 LLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLE 158 (589)
T ss_pred CeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecC
Confidence 22 2456799999999999999999999998642 3345554444332 688999999873 4544
Q ss_pred CCC-hhHHHHHHHHHH---------------------H--HhcCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH---H
Q 001748 468 KIK-DGDIASRLRRIC---------------------V--EEAINFDQAALDFIAAKS---N-GSIRDAEMLLDQL---S 516 (1018)
Q Consensus 468 ~ls-~eEI~~~L~~ia---------------------k--kegI~Id~eAL~~LA~~s---~-GnLR~Al~lLeqL---s 516 (1018)
.+. .++..++++... + ...+.++++++++|+..+ + .++|..+.++.-. +
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~A 238 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHA 238 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 433 333333333221 1 135678888888877655 2 2467766666544 2
Q ss_pred hh-C-CccCHHHHHHHhc
Q 001748 517 LL-G-KKITLSLAYELIG 532 (1018)
Q Consensus 517 l~-g-~~IT~edV~ellg 532 (1018)
.. + ..++.+||+.++.
T Consensus 239 al~gr~~V~~~Dv~~a~~ 256 (589)
T TIGR02031 239 ALHGRTEVTEEDLKLAVE 256 (589)
T ss_pred HHhCCCCCCHHHHHHHHH
Confidence 22 3 4678888877654
No 237
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.38 E-value=1.6e-06 Score=89.62 Aligned_cols=121 Identities=19% Similarity=0.141 Sum_probs=70.8
Q ss_pred ccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc
Q 001748 309 LVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV 387 (1018)
Q Consensus 309 LVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa 387 (1018)
|||....++.+.+.++. ...+..+||+|++||||+.+|+++.+.-.. ... .++.++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r----~~~-----------------pfi~vnc~ 59 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR----KNG-----------------PFISVNCA 59 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT----TTS------------------EEEEETT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc----ccC-----------------CeEEEehh
Confidence 57877777777776653 344467999999999999999999873321 111 13333332
Q ss_pred cccchhHHHHHHHHhcC---CC--------CCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEEE
Q 001748 388 RINRSDRVGSLMKSAFL---PP--------FSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFVM 445 (1018)
Q Consensus 388 s~~~vd~IReLie~a~~---~P--------~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifIL 445 (1018)
.......-.+++..... .. ..+...+++|||++.|+...|..|+++|++. +.++.+|+
T Consensus 60 ~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 139 (168)
T PF00158_consen 60 ALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIA 139 (168)
T ss_dssp TS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEE
T ss_pred hhhcchhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEe
Confidence 22111111122211100 00 0124569999999999999999999999852 23778888
Q ss_pred EecCC
Q 001748 446 ITPEL 450 (1018)
Q Consensus 446 aTn~~ 450 (1018)
+|+..
T Consensus 140 st~~~ 144 (168)
T PF00158_consen 140 STSKD 144 (168)
T ss_dssp EESS-
T ss_pred ecCcC
Confidence 88764
No 238
>PRK08116 hypothetical protein; Validated
Probab=98.38 E-value=9.6e-07 Score=97.62 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=85.0
Q ss_pred cccCCCCcccccC---cHHHHHHHHHHHHc----CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 299 QKFRPNFFDELVG---QNVVVRSLLSAISR----GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 299 eKyRP~tFddLVG---qe~iv~~L~~aIk~----grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
++|+-.+|++++. +..++....+.+.. ......++|+|++|+|||+||.++++.+.... .+ +
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~----~~-------v 145 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKG----VP-------V 145 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcC----Ce-------E
Confidence 4566668888863 33334444433331 22234699999999999999999999985321 00 1
Q ss_pred eeccCCCCcccccccc-cccchhHHHHHHHHhcCCCCCCCceEEEEeCcc--ccCHHHHHHHHHHHhccC-CcEEEEEEe
Q 001748 372 LFSSGRSRDVKEVDSV-RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ--LLHGETWATVLNSLENIS-QHVVFVMIT 447 (1018)
Q Consensus 372 ~i~sG~~~DvieIdaa-s~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD--~Ls~~a~naLLk~LEepp-~~vifILaT 447 (1018)
.+.+...+ +..+... .........++++.+. ...+|||||++ ..+...+..|+.+|+... ....+|++|
T Consensus 146 ~~~~~~~l-l~~i~~~~~~~~~~~~~~~~~~l~------~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTs 218 (268)
T PRK08116 146 IFVNFPQL-LNRIKSTYKSSGKEDENEIIRSLV------NADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTT 218 (268)
T ss_pred EEEEHHHH-HHHHHHHHhccccccHHHHHHHhc------CCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Confidence 11111000 0011100 0000112223444332 23599999994 566667778888887542 234577777
Q ss_pred cCCC-----cchHHHhcC----ccEEEeCCCC
Q 001748 448 PELD-----KLPRSALSR----SQKYHFPKIK 470 (1018)
Q Consensus 448 n~~~-----kL~~tI~SR----cq~I~F~~ls 470 (1018)
+... .+...+.+| |..+.|...+
T Consensus 219 N~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 219 NLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred CCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 7643 234567777 6667776655
No 239
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.37 E-value=1e-05 Score=87.80 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=120.9
Q ss_pred cCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccc-----
Q 001748 310 VGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEV----- 384 (1018)
Q Consensus 310 VGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieI----- 384 (1018)
--+++.+..+...+..++ ..+.++|+-|+|||.+.|++...++.. ..|..+..........+
T Consensus 34 a~h~e~l~~l~~~i~d~q--g~~~vtGevGsGKTv~~Ral~~s~~~d-----------~~~~v~i~~~~~s~~~~~~ai~ 100 (269)
T COG3267 34 ADHNEALLMLHAAIADGQ--GILAVTGEVGSGKTVLRRALLASLNED-----------QVAVVVIDKPTLSDATLLEAIV 100 (269)
T ss_pred hhhhHHHHHHHHHHhcCC--ceEEEEecCCCchhHHHHHHHHhcCCC-----------ceEEEEecCcchhHHHHHHHHH
Confidence 347788899999998887 368999999999999999877777521 12232322222211111
Q ss_pred ---ccccccchh-HHHHHHHHhcCCCCCCCc-eEEEEeCccccCHHHHHHHHHHHh---ccCCcEEEEEEecCCC---c-
Q 001748 385 ---DSVRINRSD-RVGSLMKSAFLPPFSSRF-KIFIIDECQLLHGETWATVLNSLE---NISQHVVFVMITPELD---K- 452 (1018)
Q Consensus 385 ---daas~~~vd-~IReLie~a~~~P~~g~~-kVLIIDEaD~Ls~~a~naLLk~LE---epp~~vifILaTn~~~---k- 452 (1018)
.......+. .++.+-..+...-..+.+ -+++|||+|.|...+..+|..+.+ +......++++. .+. +
T Consensus 101 ~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~G-qp~L~~~l 179 (269)
T COG3267 101 ADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIG-QPKLRPRL 179 (269)
T ss_pred HHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecC-Ccccchhh
Confidence 110000011 111111111111123334 799999999999998887655543 223333333332 221 1
Q ss_pred ---chHHHhcCccE-EEeCCCChhHHHHHHHHHHHHhcCC---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 453 ---LPRSALSRSQK-YHFPKIKDGDIASRLRRICVEEAIN---FDQAALDFIAAKSNGSIRDAEMLLDQL 515 (1018)
Q Consensus 453 ---L~~tI~SRcq~-I~F~~ls~eEI~~~L~~iakkegI~---Id~eAL~~LA~~s~GnLR~Al~lLeqL 515 (1018)
....+..|+.. |..+|++.++...+|+..++..+.. ++++++..|+..+.|-+|...+...++
T Consensus 180 r~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 180 RLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred chHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHH
Confidence 12456678886 9999999999999999998876553 688999999999999888777766664
No 240
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2e-06 Score=107.05 Aligned_cols=130 Identities=19% Similarity=0.348 Sum_probs=90.4
Q ss_pred ccccCcHHHHHHHHHHHHcCC-------CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCC
Q 001748 307 DELVGQNVVVRSLLSAISRGM-------VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSR 379 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~gr-------l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~ 379 (1018)
+.++||++++..+.++|..-+ ..-.+||.||.|+|||-+|+++|..+..... ....+.-+...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~----------~~IriDmse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEE----------NFIRLDMSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCcc----------ceEEechhhhh
Confidence 347899999999999997532 3345999999999999999999998842111 00111101000
Q ss_pred cccc-cc-cccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------CCcEEEEEE
Q 001748 380 DVKE-VD-SVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----------SQHVVFVMI 446 (1018)
Q Consensus 380 Dvie-Id-aas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p~~vifILa 446 (1018)
.+.. ++ ..+..+.+....|.+.+...| +.||+|||++......++.|++.+++- -.+++||++
T Consensus 632 evskligsp~gyvG~e~gg~LteavrrrP----~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMT 707 (898)
T KOG1051|consen 632 EVSKLIGSPPGYVGKEEGGQLTEAVKRRP----YSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMT 707 (898)
T ss_pred hhhhccCCCcccccchhHHHHHHHHhcCC----ceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEe
Confidence 0001 11 122345566778888887777 579999999999999999999999863 246788888
Q ss_pred ecCC
Q 001748 447 TPEL 450 (1018)
Q Consensus 447 Tn~~ 450 (1018)
++.-
T Consensus 708 sn~~ 711 (898)
T KOG1051|consen 708 SNVG 711 (898)
T ss_pred cccc
Confidence 7754
No 241
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.37 E-value=2.7e-05 Score=97.36 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=82.8
Q ss_pred cccCcHHHHHHHHHHHHcCC--------------------CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 001748 308 ELVGQNVVVRSLLSAISRGM--------------------VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLC 367 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aIk~gr--------------------l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C 367 (1018)
.|.|++.++..|.-++-.|. -..++||.|+|||||+.+|+.+++......
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---------- 520 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---------- 520 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc----------
Confidence 46789999988877775442 112699999999999999999988532110
Q ss_pred cccceeccCCCCcccccccccc-cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC--------
Q 001748 368 RECALFSSGRSRDVKEVDSVRI-NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-------- 438 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieIdaas~-~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-------- 438 (1018)
+.+|..+....+.+... .... -.+..-.. -.-..+...+++|||++.|....+.+|+..||+-.
T Consensus 521 -----ytsG~~~s~vgLTa~~~~~d~~-tG~~~le~-GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 521 -----YTSGKSSSSVGLTASIKFNESD-NGRAMIQP-GAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred -----cCCCCCCccccccchhhhcccc-cCcccccC-CcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCc
Confidence 11121111111110000 0000 00000000 00123456799999999999999999999998632
Q ss_pred -----CcEEEEEEecCC-------------CcchHHHhcCccE
Q 001748 439 -----QHVVFVMITPEL-------------DKLPRSALSRSQK 463 (1018)
Q Consensus 439 -----~~vifILaTn~~-------------~kL~~tI~SRcq~ 463 (1018)
..+.+|.+++-. -.++++|+|||..
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL 636 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL 636 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE
Confidence 355566665532 1578999999973
No 242
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.36 E-value=1.6e-06 Score=85.94 Aligned_cols=126 Identities=19% Similarity=0.257 Sum_probs=78.1
Q ss_pred cCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccccc
Q 001748 310 VGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVR 388 (1018)
Q Consensus 310 VGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas 388 (1018)
||....++.+.+.++. ......+||+|++||||+++|+.|...-... ...++.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~---------------------~~~~~~~~~~~ 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA---------------------NGPFIVIDCAS 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC---------------------CS-CCCCCHHC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc---------------------CCCeEEechhh
Confidence 4666666677666653 2334568999999999999999998754210 01122222222
Q ss_pred ccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-CCcEEEEEEecCCC-------cchHHHhcC
Q 001748 389 INRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-SQHVVFVMITPELD-------KLPRSALSR 460 (1018)
Q Consensus 389 ~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-p~~vifILaTn~~~-------kL~~tI~SR 460 (1018)
.. .++++.+ ....+||+|++.|+.+.+..|+.+|+.. ..++.+|+++...- .+.+.+..|
T Consensus 60 ~~-----~~~l~~a-------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~ 127 (138)
T PF14532_consen 60 LP-----AELLEQA-------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYR 127 (138)
T ss_dssp TC-----HHHHHHC-------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHH
T ss_pred Cc-----HHHHHHc-------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHH
Confidence 11 3344443 3458999999999999999999999864 56778888876532 355666666
Q ss_pred cc--EEEeCC
Q 001748 461 SQ--KYHFPK 468 (1018)
Q Consensus 461 cq--~I~F~~ 468 (1018)
+. .+.+++
T Consensus 128 l~~~~i~lPp 137 (138)
T PF14532_consen 128 LSQLEIHLPP 137 (138)
T ss_dssp CSTCEEEE--
T ss_pred hCCCEEeCCC
Confidence 54 555554
No 243
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.36 E-value=7.8e-07 Score=87.80 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=58.3
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc--cccccccchhHHHHHHHHhcCCCCC
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE--VDSVRINRSDRVGSLMKSAFLPPFS 408 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie--Idaas~~~vd~IReLie~a~~~P~~ 408 (1018)
++||.|+||+|||++|+++|+.++..- ..+. . .+|..- +-+...-..+. .-+ .....|.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f-------------~RIq-~-tpdllPsDi~G~~v~~~~~--~~f-~~~~GPif 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSF-------------KRIQ-F-TPDLLPSDILGFPVYDQET--GEF-EFRPGPIF 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--E-------------EEEE----TT--HHHHHEEEEEETTT--TEE-EEEE-TT-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCce-------------eEEE-e-cCCCCcccceeeeeeccCC--Cee-EeecChhh
Confidence 479999999999999999999987431 1111 1 122111 10000000000 000 01123433
Q ss_pred CCceEEEEeCccccCHHHHHHHHHHHhccCC----------cEEEEEEecCCC------cchHHHhcCcc
Q 001748 409 SRFKIFIIDECQLLHGETWATVLNSLENISQ----------HVVFVMITPELD------KLPRSALSRSQ 462 (1018)
Q Consensus 409 g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~----------~vifILaTn~~~------kL~~tI~SRcq 462 (1018)
. .|+++||+.+..+.++.+||..|+|..- .-.+|++|.++. .++++++.|+.
T Consensus 63 ~--~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 T--NILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S--SEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred h--ceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 3 4999999999999999999999987421 224666665553 67888888874
No 244
>PRK12377 putative replication protein; Provisional
Probab=98.34 E-value=2e-06 Score=94.17 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=82.7
Q ss_pred cccCCCCccccc----CcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 299 QKFRPNFFDELV----GQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 299 eKyRP~tFddLV----Gqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
..++..+|+++. |+..++......+.. ..-...++|+||+|||||++|.++++.+..... .+. +
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~----------~v~-~ 134 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR----------SVI-V 134 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----------CeE-E
Confidence 445556888886 344444444433321 111357899999999999999999999852210 011 1
Q ss_pred ccCCCCccc-ccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCc--cccCHHHHHHHHHHHhccCC-cEEEEEEecC
Q 001748 374 SSGRSRDVK-EVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDEC--QLLHGETWATVLNSLENISQ-HVVFVMITPE 449 (1018)
Q Consensus 374 ~sG~~~Dvi-eIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEa--D~Ls~~a~naLLk~LEepp~-~vifILaTn~ 449 (1018)
..- .++. .+......+ ....++++.+ ....||||||+ +.++...+..|+.+++..-. ..-.|++||.
T Consensus 135 i~~--~~l~~~l~~~~~~~-~~~~~~l~~l------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 135 VTV--PDVMSRLHESYDNG-QSGEKFLQEL------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EEH--HHHHHHHHHHHhcc-chHHHHHHHh------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 100 0000 111100000 1122344443 23469999999 45667778889999987544 2446777775
Q ss_pred CC-----cchHHHhcCc-----cEEEeCCCC
Q 001748 450 LD-----KLPRSALSRS-----QKYHFPKIK 470 (1018)
Q Consensus 450 ~~-----kL~~tI~SRc-----q~I~F~~ls 470 (1018)
.. .+...|.+|. .++.|...+
T Consensus 206 ~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 206 NHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred CHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 42 2334455553 246665433
No 245
>PF13173 AAA_14: AAA domain
Probab=98.28 E-value=2.9e-06 Score=83.06 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=70.8
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccc--hhH--HHHHHHHhcCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINR--SDR--VGSLMKSAFLP 405 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~--vd~--IReLie~a~~~ 405 (1018)
.+++++||+|+|||++++.+++.+.. + ..+.+++...... ... +.+.+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~--~--------------------~~~~yi~~~~~~~~~~~~~~~~~~~~~~--- 57 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLP--P--------------------ENILYINFDDPRDRRLADPDLLEYFLEL--- 57 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcc--c--------------------ccceeeccCCHHHHHHhhhhhHHHHHHh---
Confidence 47899999999999999999988740 0 0122222111100 000 11222111
Q ss_pred CCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCc----chHHHhcCccEEEeCCCChhHH
Q 001748 406 PFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK----LPRSALSRSQKYHFPKIKDGDI 474 (1018)
Q Consensus 406 P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~k----L~~tI~SRcq~I~F~~ls~eEI 474 (1018)
...+..++||||+|.+. +....+....+.. .+..+|++++.... ....+..|...+.+.|++-.|.
T Consensus 58 -~~~~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 -IKPGKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred -hccCCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 11256799999999996 3444444444443 56777777765543 3455667888899999987764
No 246
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.26 E-value=2.2e-05 Score=93.87 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=91.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
..|.+++||..+++.+.-++..| +.++|.||+|+|||++++.++..+....... .-++...+. ..|....-..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G---~~llliG~~GsGKTtLak~L~gllpp~~g~e---~le~~~i~s-~~g~~~~~~~ 260 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG---HNLLLIGPPGTGKTMLASRINGLLPDLSNEE---ALESAAILS-LVNAESVQKQ 260 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC---cEEEEECCCCCcHHHHHHHHhccCCCCCCcE---EEecchhhh-hhccccccCC
Confidence 37888999999888877666544 6899999999999999999987663211110 000000000 0010000000
Q ss_pred c--ccccc-cchhHHHHHHHHhc-CCC---CCCCceEEEEeCccccCHHHHHHHHHHHhcc-------------CCcEEE
Q 001748 384 V--DSVRI-NRSDRVGSLMKSAF-LPP---FSSRFKIFIIDECQLLHGETWATVLNSLENI-------------SQHVVF 443 (1018)
Q Consensus 384 I--daas~-~~vd~IReLie~a~-~~P---~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-------------p~~vif 443 (1018)
+ .+... ...-....++..-. ..| ..+...++||||++.+....++.|+..||+- |.++.+
T Consensus 261 ~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~l 340 (506)
T PRK09862 261 WRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQL 340 (506)
T ss_pred cCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEE
Confidence 0 00000 00000011111000 000 1235679999999999999999999999753 345666
Q ss_pred EEEecCCC---------------------cchHHHhcCcc-EEEeCCCC
Q 001748 444 VMITPELD---------------------KLPRSALSRSQ-KYHFPKIK 470 (1018)
Q Consensus 444 ILaTn~~~---------------------kL~~tI~SRcq-~I~F~~ls 470 (1018)
|.++|-.. ++..+++.|+. .+.+.+++
T Consensus 341 IAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 341 VAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred EEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 66665431 46678999998 57777764
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.26 E-value=3.6e-06 Score=91.94 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=83.5
Q ss_pred cccccCCCCccccc----CcHHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 297 LSQKFRPNFFDELV----GQNVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 297 L~eKyRP~tFddLV----Gqe~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
+.+.|++.+|+++. ++..++..+.+.+..- .....++|+|++|||||+++.++|+++..... .+
T Consensus 62 i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~----------~v- 130 (244)
T PRK07952 62 IRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK----------SV- 130 (244)
T ss_pred CCccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC----------eE-
Confidence 34567788999987 3444556666555431 11247999999999999999999999853210 01
Q ss_pred eeccCCCCccc-ccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH--HHHHHHHHHhccCC-cEEEEEEe
Q 001748 372 LFSSGRSRDVK-EVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE--TWATVLNSLENISQ-HVVFVMIT 447 (1018)
Q Consensus 372 ~i~sG~~~Dvi-eIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~--a~naLLk~LEepp~-~vifILaT 447 (1018)
.+..- .++. .+............++++.+ ....||||||++..... ....|..+++.... ....|++|
T Consensus 131 ~~it~--~~l~~~l~~~~~~~~~~~~~~l~~l------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitS 202 (244)
T PRK07952 131 LIITV--ADIMSAMKDTFSNSETSEEQLLNDL------SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLT 202 (244)
T ss_pred EEEEH--HHHHHHHHHHHhhccccHHHHHHHh------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 11100 0111 00000000001223344443 23569999999876533 34456667765432 34566777
Q ss_pred cCCC-----cchHHHhcCc-----cEEEeCC
Q 001748 448 PELD-----KLPRSALSRS-----QKYHFPK 468 (1018)
Q Consensus 448 n~~~-----kL~~tI~SRc-----q~I~F~~ 468 (1018)
|... .+...+.+|+ .++.|..
T Consensus 203 Nl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~ 233 (244)
T PRK07952 203 NSNMEEMTKLLGERVMDRMRLGNSLWVIFNW 233 (244)
T ss_pred CCCHHHHHHHhChHHHHHHHHCCceEEEeeC
Confidence 6542 2344555554 2566654
No 248
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.26 E-value=3.4e-05 Score=84.69 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccc-------
Q 001748 313 NVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEV------- 384 (1018)
Q Consensus 313 e~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieI------- 384 (1018)
+..++.|...+... .-.+.+.++|++|+|||++|+.+++........ .....+..+...+...+
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f--------~~v~wv~~~~~~~~~~~~~~i~~~ 73 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF--------DGVIWVSLSKNPSLEQLLEQILRQ 73 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC--------TEEEEEEEES-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccc--------cccccccccccccccccccccccc
Confidence 56677888888763 445789999999999999999999874311100 00111111111111111
Q ss_pred -ccc-----cccch-hHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHH
Q 001748 385 -DSV-----RINRS-DRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSA 457 (1018)
Q Consensus 385 -daa-----s~~~v-d~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI 457 (1018)
... ..... +..+.+.+.+ ..++-++|+|+++... .+..|...+.....+..+|++|... .+...+
T Consensus 74 l~~~~~~~~~~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~ 145 (287)
T PF00931_consen 74 LGEPDSSISDPKDIEELQDQLRELL-----KDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR-SVAGSL 145 (287)
T ss_dssp HTCC-STSSCCSSHHHHHHHHHHHH-----CCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG-GGGTTH
T ss_pred ccccccccccccccccccccchhhh-----ccccceeeeeeecccc--ccccccccccccccccccccccccc-cccccc
Confidence 000 00011 1122233332 2336799999987654 4455555554444567777777664 344444
Q ss_pred hcCccEEEeCCCChhHHHHHHHHHHHHhc---CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 458 LSRSQKYHFPKIKDGDIASRLRRICVEEA---INFDQAALDFIAAKSNGSIRDAEMLLDQL 515 (1018)
Q Consensus 458 ~SRcq~I~F~~ls~eEI~~~L~~iakkeg---I~Id~eAL~~LA~~s~GnLR~Al~lLeqL 515 (1018)
......+.+.+++.++..+.+...+.... ....++.+..|++.++|.+..+.-+...+
T Consensus 146 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 146 GGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp HSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 43467899999999999999988875444 11224556789999988876555444433
No 249
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.22 E-value=1.6e-05 Score=88.01 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=79.2
Q ss_pred ccCcHHHHHHHHHHHHc----C--CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC-C-Cc
Q 001748 309 LVGQNVVVRSLLSAISR----G--MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR-S-RD 380 (1018)
Q Consensus 309 LVGqe~iv~~L~~aIk~----g--rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~-~-~D 380 (1018)
+.||.-+++.+.++++. + +-|-.+=|+|++||||..++++||+.+... |.-..++..+.+. + |+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~--------Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRG--------GLRSPFVHHFVATLHFPH 155 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhc--------cccchhHHHhhhhccCCC
Confidence 67888777777777653 2 344568899999999999999999987532 1112223222221 1 11
Q ss_pred ccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccC-------CcEEEEEEecCCC
Q 001748 381 VKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENIS-------QHVVFVMITPELD 451 (1018)
Q Consensus 381 vieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp-------~~vifILaTn~~~ 451 (1018)
-..+..-.. +--+.+.+.+. ...+.++|+||+|.|.+...++|-.+|+..| ...+||+.+|.-.
T Consensus 156 ~~~ie~Yk~---eL~~~v~~~v~----~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 156 ASKIEDYKE---ELKNRVRGTVQ----ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred hHHHHHHHH---HHHHHHHHHHH----hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 111111111 11112222222 2345699999999999999999988888543 3678999987543
No 250
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=98.22 E-value=2e-05 Score=77.88 Aligned_cols=106 Identities=16% Similarity=0.214 Sum_probs=85.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHH------------HHHHHHhhhhcCC
Q 001748 540 LDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA------------RKNFFGKHTSEAD 607 (1018)
Q Consensus 540 f~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i------------~~~~l~r~a~~~s 607 (1018)
|+++|+++.|+...+++.++.|..+|.+|..+++.|.+.+|.++..+.......+ ++..+.+..++.+
T Consensus 2 F~L~Da~L~G~~~ra~riL~~L~~Eg~ep~~lLw~L~rElr~L~~l~~~~~~~~l~~~~~~~rIW~~Rq~l~~~Al~Rls 81 (125)
T PF14840_consen 2 FQLIDALLAGDAKRALRILQGLQAEGVEPPILLWALQRELRLLIQLKQALAQQPLQQLFKQLRIWQKRQPLYQQALQRLS 81 (125)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTT-CCHHHHHHHHHHHS-
T ss_pred CcHHHHHHCCCHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHhHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999999999999877654332222 2245556679999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHhccC
Q 001748 608 MQKLSRALKILSETEKQLRMSK--HQTTWLTVALLQLSSS 645 (1018)
Q Consensus 608 ~~~L~~aL~iLseae~qLK~s~--n~rl~LE~lLlkL~~~ 645 (1018)
...|..++..+..+|..+|+.. ++...|+.+.+.||.-
T Consensus 82 ~~~L~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~lc~~ 121 (125)
T PF14840_consen 82 LQQLEQLLQLLAQIDRAIKGNYQGDPWDELEQLSLLLCGK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCC
Confidence 9999999999999999999865 6788888899998853
No 251
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.5e-05 Score=89.68 Aligned_cols=123 Identities=19% Similarity=0.275 Sum_probs=74.8
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccc--hh-HHHHHHHHhcCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINR--SD-RVGSLMKSAFLPP 406 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~--vd-~IReLie~a~~~P 406 (1018)
..+|+.||.|+|||.+|+.||+-|+-+. ..|. |. .+..+...+ ++ -|..|+..+.+.-
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPf-------aIcD-cT-----------tLTQAGYVGeDVEsvi~KLl~~A~~nV 287 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPF-------AICD-CT-----------TLTQAGYVGEDVESVIQKLLQEAEYNV 287 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCe-------EEec-cc-----------chhhcccccccHHHHHHHHHHHccCCH
Confidence 3589999999999999999999987321 1111 11 111122211 11 2455555555444
Q ss_pred CCCCceEEEEeCccccCH--------------HHHHHHHHHHhcc-------------CCcE-------EEEEEecCCCc
Q 001748 407 FSSRFKIFIIDECQLLHG--------------ETWATVLNSLENI-------------SQHV-------VFVMITPELDK 452 (1018)
Q Consensus 407 ~~g~~kVLIIDEaD~Ls~--------------~a~naLLk~LEep-------------p~~v-------ifILaTn~~~k 452 (1018)
..+...|++|||+|.+.. .++.+|||++|.. .... +++++...-..
T Consensus 288 ekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~ 367 (564)
T KOG0745|consen 288 EKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVG 367 (564)
T ss_pred HHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccc
Confidence 455678999999999872 3799999999852 1112 22222222335
Q ss_pred chHHHhcCcc--EEEeCCCCh
Q 001748 453 LPRSALSRSQ--KYHFPKIKD 471 (1018)
Q Consensus 453 L~~tI~SRcq--~I~F~~ls~ 471 (1018)
|.+.|.+|.. .+-|..++.
T Consensus 368 Ldk~I~rR~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 368 LDKIISRRLDDKSLGFGAPSS 388 (564)
T ss_pred hHHHHHHhhcchhcccCCCCC
Confidence 6677777765 466666654
No 252
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.8e-05 Score=87.00 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=88.2
Q ss_pred ceEEEEeCccccCH------------HHHHHHHHHHhcc----------CCcEEEEEEe----cCCCcchHHHhcCcc-E
Q 001748 411 FKIFIIDECQLLHG------------ETWATVLNSLENI----------SQHVVFVMIT----PELDKLPRSALSRSQ-K 463 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~------------~a~naLLk~LEep----------p~~vifILaT----n~~~kL~~tI~SRcq-~ 463 (1018)
..++||||+|.+.. ..|.-||.++|.. ..++.||.+. ..|..|.|.|.-|+. +
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceE
Confidence 34999999998753 2567799999863 2345566553 456789999999998 8
Q ss_pred EEeCCCChhHHHHHHHH-----------HHHHhcC--CCCHHHHHHHHHHcC--------CCHHHHHHHHHHHHh----h
Q 001748 464 YHFPKIKDGDIASRLRR-----------ICVEEAI--NFDQAALDFIAAKSN--------GSIRDAEMLLDQLSL----L 518 (1018)
Q Consensus 464 I~F~~ls~eEI~~~L~~-----------iakkegI--~Id~eAL~~LA~~s~--------GnLR~Al~lLeqLsl----~ 518 (1018)
+++..++.+++..+|.+ .++.+|+ .|+++|+..||+.+- =..|++...|+++.. .
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFe 410 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFE 410 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCcc
Confidence 99999999998887532 3344565 579999999988762 145788877777632 1
Q ss_pred -----CC--ccCHHHHHHHhccC
Q 001748 519 -----GK--KITLSLAYELIGIV 534 (1018)
Q Consensus 519 -----g~--~IT~edV~ellg~v 534 (1018)
++ .|+.+-|.+-++.+
T Consensus 411 A~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 411 APDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred CCcCCCCeEEEcHHHHHHHHHHH
Confidence 22 47777777766544
No 253
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.15 E-value=0.00013 Score=87.61 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=43.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHH----c-CCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 302 RPNFFDELVGQNVVVRSLLSAIS----R-GMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 302 RP~tFddLVGqe~iv~~L~~aIk----~-grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
|...|+|+.|+++++..+.+.++ . +.-...++|.||||+|||++|+.||+.+.
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 34579999999999988887762 1 23346899999999999999999999874
No 254
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.14 E-value=6.3e-05 Score=84.71 Aligned_cols=196 Identities=15% Similarity=0.207 Sum_probs=123.5
Q ss_pred CCcccccCcHHHHHHHHHHHH-cCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 304 NFFDELVGQNVVVRSLLSAIS-RGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk-~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
.-|+.+++.....+.+....+ -.-+...+||.|+.||||..+|++....- +.... .+.
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S----~R~~~-----------------pFl 259 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLAS----PRHSK-----------------PFL 259 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcC----cccCC-----------------Cee
Confidence 368999997777766655443 33444569999999999999999864422 11111 122
Q ss_pred ccccccccc-------------hhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----------C
Q 001748 383 EVDSVRINR-------------SDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----------S 438 (1018)
Q Consensus 383 eIdaas~~~-------------vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----------p 438 (1018)
-++.++... .+.-..+++.+ ...-+++||+..|++..+..||++|.+- .
T Consensus 260 alNCA~lPe~~aEsElFG~apg~~gk~GffE~A-------ngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 260 ALNCASLPEDAAESELFGHAPGDEGKKGFFEQA-------NGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred EeecCCCchhHhHHHHhcCCCCCCCccchhhhc-------cCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEE
Confidence 222222110 01111233322 3457999999999999999999999642 2
Q ss_pred CcEEEEEEecCC-------CcchHHHhcCccE--EEeCCCCh--hH----HHHHHHHHHHHhcC---CCCHHHHHHHHHH
Q 001748 439 QHVVFVMITPEL-------DKLPRSALSRSQK--YHFPKIKD--GD----IASRLRRICVEEAI---NFDQAALDFIAAK 500 (1018)
Q Consensus 439 ~~vifILaTn~~-------~kL~~tI~SRcq~--I~F~~ls~--eE----I~~~L~~iakkegI---~Id~eAL~~LA~~ 500 (1018)
.++.+|.+|..+ .++-..+--|.-+ +.++|+.+ .+ ...++++++.+.|+ .++++.+.+|.++
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 356666666543 1444556566664 44455543 22 33457778888777 4677888877765
Q ss_pred c-CCCHHHHHHHHHHHHhh--CCccCHHHH
Q 001748 501 S-NGSIRDAEMLLDQLSLL--GKKITLSLA 527 (1018)
Q Consensus 501 s-~GnLR~Al~lLeqLsl~--g~~IT~edV 527 (1018)
- .||+|.+.|.|-+++.. +..++.+++
T Consensus 413 ~WpGNVRqL~N~iyRA~s~~Eg~~l~i~~i 442 (511)
T COG3283 413 AWPGNVRQLKNAIYRALTLLEGYELRIEDI 442 (511)
T ss_pred CCCccHHHHHHHHHHHHHHhccCccchhhc
Confidence 4 69999999999887543 555666554
No 255
>PRK08181 transposase; Validated
Probab=98.13 E-value=1e-05 Score=89.56 Aligned_cols=106 Identities=17% Similarity=0.297 Sum_probs=59.7
Q ss_pred HHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc-ccccccccchhHHHHHH
Q 001748 321 SAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK-EVDSVRINRSDRVGSLM 399 (1018)
Q Consensus 321 ~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi-eIdaas~~~vd~IReLi 399 (1018)
.++..+ ..++|+||+|+|||++|.++++++..... .+ .+... .++. .+..+.. .....+++
T Consensus 101 ~~~~~~---~nlll~Gp~GtGKTHLa~Aia~~a~~~g~----------~v-~f~~~--~~L~~~l~~a~~--~~~~~~~l 162 (269)
T PRK08181 101 SWLAKG---ANLLLFGPPGGGKSHLAAAIGLALIENGW----------RV-LFTRT--TDLVQKLQVARR--ELQLESAI 162 (269)
T ss_pred HHHhcC---ceEEEEecCCCcHHHHHHHHHHHHHHcCC----------ce-eeeeH--HHHHHHHHHHHh--CCcHHHHH
Confidence 456543 46999999999999999999998742110 00 11110 0000 1110000 01122233
Q ss_pred HHhcCCCCCCCceEEEEeCccccC--HHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 400 KSAFLPPFSSRFKIFIIDECQLLH--GETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 400 e~a~~~P~~g~~kVLIIDEaD~Ls--~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
+.+ ....+|||||++.+. ......|+.+++......-+|++|+.+
T Consensus 163 ~~l------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKL------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHH------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 333 234699999998764 345567888887654444577777764
No 256
>PRK06921 hypothetical protein; Provisional
Probab=98.12 E-value=9.2e-06 Score=89.82 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.9
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.+.++|+||+|+|||+++.++|+++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 46799999999999999999999885
No 257
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.10 E-value=0.00022 Score=90.61 Aligned_cols=201 Identities=14% Similarity=0.139 Sum_probs=113.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccc------ccee---
Q 001748 303 PNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE------CALF--- 373 (1018)
Q Consensus 303 P~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~s------c~~i--- 373 (1018)
|..-.++|-.+.+...|.. ..-.+.++++||.|.||||++..++.....-....-.+....+. |..+
T Consensus 10 p~~~~~~~~R~rl~~~l~~----~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~ 85 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG----ANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQA 85 (903)
T ss_pred CCCccccCcchHHHHHHhc----ccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHh
Confidence 4445667777777766643 33446799999999999999999876432000000000000000 0000
Q ss_pred ccCCCCcccccc-ccc-ccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHH-HHHHHHHHhccCCcEEEEEEecCC
Q 001748 374 SSGRSRDVKEVD-SVR-INRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGET-WATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 374 ~sG~~~DvieId-aas-~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a-~naLLk~LEepp~~vifILaTn~~ 450 (1018)
..+.......+. ... ......+..++..+.. ..++-|||||++|.+.... ...|..+++..++++.+|+++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 86 TNGHCSKSEALAQKRQYASLSSLFAQLFIELAD---WHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred cCcccchhhhhhccCCcCCHHHHHHHHHHHHhc---CCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 000000000000 000 0001123334443321 2345799999999997554 445666677778888888887654
Q ss_pred Ccc-hHHHhcCccEEEeC----CCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 001748 451 DKL-PRSALSRSQKYHFP----KIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLD 513 (1018)
Q Consensus 451 ~kL-~~tI~SRcq~I~F~----~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLe 513 (1018)
..+ ...+.-+-+.+.+. +++.+|+..++.... |..++++.+..|.+.++|++.-+.-.+.
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHHHHHHHHH
Confidence 333 23333333344444 889999999886544 7789999999999999999876554443
No 258
>PRK06526 transposase; Provisional
Probab=98.02 E-value=2.1e-05 Score=86.56 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=56.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc-ccccccccchhHHHHHHHHhcCCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK-EVDSVRINRSDRVGSLMKSAFLPPFS 408 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi-eIdaas~~~vd~IReLie~a~~~P~~ 408 (1018)
..++|+||+|+|||++|.+++.++...... +.+... .++. .+...... ..+...+..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~-----------v~f~t~--~~l~~~l~~~~~~--~~~~~~l~~l------ 157 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR-----------VLFATA--AQWVARLAAAHHA--GRLQAELVKL------ 157 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc-----------hhhhhH--HHHHHHHHHHHhc--CcHHHHHHHh------
Confidence 569999999999999999999877321000 000000 0000 01000000 1122222222
Q ss_pred CCceEEEEeCccccC--HHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 409 SRFKIFIIDECQLLH--GETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 409 g~~kVLIIDEaD~Ls--~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
.+..+|||||++.+. ....+.|+.+++.......+|++|+.+
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 235699999999764 566677888876544344577787765
No 259
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.98 E-value=2e-05 Score=76.16 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=54.8
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccc-hhHHHHHHHHhcCCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINR-SDRVGSLMKSAFLPPFS 408 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~-vd~IReLie~a~~~P~~ 408 (1018)
..++++||+|+|||++++.+++.+........ +.++..+....... .+-...+.+.+......
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKN----------------HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC----------------CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccC----------------CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc
Confidence 56899999999999999999998753100000 11122221111110 01111222221111100
Q ss_pred -----------------CCceEEEEeCcccc-CHHHHHHHHHHHhccCCcEEEEEEecC
Q 001748 409 -----------------SRFKIFIIDECQLL-HGETWATVLNSLENISQHVVFVMITPE 449 (1018)
Q Consensus 409 -----------------g~~kVLIIDEaD~L-s~~a~naLLk~LEepp~~vifILaTn~ 449 (1018)
....+|||||+|.| ..+.++.|...++ ...+.+|++.+.
T Consensus 69 ~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 RQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 11259999999999 8888888877777 356666666543
No 260
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.94 E-value=2.9e-05 Score=87.61 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=70.2
Q ss_pred cccCCCCcccccC----cHHHHHHHHHHHHc---CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc
Q 001748 299 QKFRPNFFDELVG----QNVVVRSLLSAISR---GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 299 eKyRP~tFddLVG----qe~iv~~L~~aIk~---grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~ 371 (1018)
..+...+|+++.. +..+......++.. +.....++|+||+|+|||++|.++|+++..... .+.
T Consensus 119 ~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~----------~v~ 188 (306)
T PRK08939 119 KDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV----------SST 188 (306)
T ss_pred HhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----------CEE
Confidence 3344567887763 33334444444442 334568999999999999999999999852110 011
Q ss_pred eeccCCCCcc-cccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCcccc--CHHHHHHHHH-HHhcc-CCcEEEEEE
Q 001748 372 LFSSGRSRDV-KEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLL--HGETWATVLN-SLENI-SQHVVFVMI 446 (1018)
Q Consensus 372 ~i~sG~~~Dv-ieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~L--s~~a~naLLk-~LEep-p~~vifILa 446 (1018)
+..- +++ .++..+.. ...+.+.++.+. ...||||||+... +......++. +++.. ......|++
T Consensus 189 -~~~~--~~l~~~lk~~~~--~~~~~~~l~~l~------~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~T 257 (306)
T PRK08939 189 -LLHF--PEFIRELKNSIS--DGSVKEKIDAVK------EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFT 257 (306)
T ss_pred -EEEH--HHHHHHHHHHHh--cCcHHHHHHHhc------CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 1100 010 11111110 012334455443 3459999999754 4434434544 44543 244557777
Q ss_pred ecCC
Q 001748 447 TPEL 450 (1018)
Q Consensus 447 Tn~~ 450 (1018)
||..
T Consensus 258 SNl~ 261 (306)
T PRK08939 258 SNFD 261 (306)
T ss_pred CCCC
Confidence 7754
No 261
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.93 E-value=0.00038 Score=84.83 Aligned_cols=202 Identities=10% Similarity=0.034 Sum_probs=119.0
Q ss_pred cHHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccccccc
Q 001748 312 QNVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRIN 390 (1018)
Q Consensus 312 qe~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~ 390 (1018)
|++++..|.-..-.. .+ ..+||.|++|++|+++++.++..+-...+.. ..+.... .....
T Consensus 8 ~~~~~~Al~l~av~p~~~-gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r---------------~~p~~~t---~~~L~ 68 (584)
T PRK13406 8 WADAALAAALLAVDPAGL-GGVVLRARAGPVRDRWLAALRALLPAGTPLR---------------RLPPGIA---DDRLL 68 (584)
T ss_pred HHHHHHHHHHhCcCcccc-ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcc---------------cCCCCCc---HHHcc
Confidence 555555544333333 33 4689999999999999999998773210100 0011110 11111
Q ss_pred chhHHHHHHHHhc--CCC---CCCCceEEEEeCccccCHHHHHHHHHHHhccCCcE-----------EEEEEecCC----
Q 001748 391 RSDRVGSLMKSAF--LPP---FSSRFKIFIIDECQLLHGETWATVLNSLENISQHV-----------VFVMITPEL---- 450 (1018)
Q Consensus 391 ~vd~IReLie~a~--~~P---~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~v-----------ifILaTn~~---- 450 (1018)
|--++..-+..-. ..| ..+.+.||||||+..+....+++|+..|++-.-.+ .|+++.++.
T Consensus 69 Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~ 148 (584)
T PRK13406 69 GGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEE 148 (584)
T ss_pred CCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhc
Confidence 1122322222211 111 13456899999999999999999999999742211 233333232
Q ss_pred -CcchHHHhcCcc-EEEeCCCChhHHH-------HHHHHHHHHhcCCCCHHHHHHHHHHcC--C--CHHHHHHHHHHH--
Q 001748 451 -DKLPRSALSRSQ-KYHFPKIKDGDIA-------SRLRRICVEEAINFDQAALDFIAAKSN--G--SIRDAEMLLDQL-- 515 (1018)
Q Consensus 451 -~kL~~tI~SRcq-~I~F~~ls~eEI~-------~~L~~iakkegI~Id~eAL~~LA~~s~--G--nLR~Al~lLeqL-- 515 (1018)
.++.+.++.||. .+.+..++..+.. .++.....-.++.++++.+++++..+. | ++|..+.++.-.
T Consensus 149 ~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa 228 (584)
T PRK13406 149 DERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARA 228 (584)
T ss_pred ccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 258899999998 6888877765432 122222222478899999988776542 2 667776666654
Q ss_pred -Hhh-C-CccCHHHHHHHhc
Q 001748 516 -SLL-G-KKITLSLAYELIG 532 (1018)
Q Consensus 516 -sl~-g-~~IT~edV~ellg 532 (1018)
+.. + ..|+.++|.+++.
T Consensus 229 ~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 229 AAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred HHHHcCCCCCCHHHHHHHHH
Confidence 222 3 4688888877653
No 262
>PF05729 NACHT: NACHT domain
Probab=97.93 E-value=3.5e-05 Score=76.75 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=77.1
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcc-c---cc----ccccccchhHHHHHHHHh
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDV-K---EV----DSVRINRSDRVGSLMKSA 402 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dv-i---eI----daas~~~vd~IReLie~a 402 (1018)
.++++|++|+|||++++.++..+......... .....+........ . .+ ..........+......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 76 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-----FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQEL 76 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCccccc-----ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHH
Confidence 58999999999999999999988644322210 00011111110000 0 00 000000001111111111
Q ss_pred cCCCCCCCceEEEEeCccccCHHHH--------HHHHHHHhc-cCCcEEEEEEecCCCc-chHHHhcCccEEEeCCCChh
Q 001748 403 FLPPFSSRFKIFIIDECQLLHGETW--------ATVLNSLEN-ISQHVVFVMITPELDK-LPRSALSRSQKYHFPKIKDG 472 (1018)
Q Consensus 403 ~~~P~~g~~kVLIIDEaD~Ls~~a~--------naLLk~LEe-pp~~vifILaTn~~~k-L~~tI~SRcq~I~F~~ls~e 472 (1018)
. .....-++|||.+|.+..... ..|..++.. .++++.+|+++..... -..........+.+.+++.+
T Consensus 77 ~---~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 77 L---EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred H---HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 1 123456899999998876322 234455555 3556777776654321 12333333468999999999
Q ss_pred HHHHHHHHHHH
Q 001748 473 DIASRLRRICV 483 (1018)
Q Consensus 473 EI~~~L~~iak 483 (1018)
++.+++++.++
T Consensus 154 ~~~~~~~~~f~ 164 (166)
T PF05729_consen 154 DIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 263
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=8.6e-05 Score=90.14 Aligned_cols=178 Identities=22% Similarity=0.288 Sum_probs=112.9
Q ss_pred cccccCcHHHHHHHHHHHHcC--------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC
Q 001748 306 FDELVGQNVVVRSLLSAISRG--------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR 377 (1018)
Q Consensus 306 FddLVGqe~iv~~L~~aIk~g--------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~ 377 (1018)
|-..-+++..+..+.+.+... ++...+|++|+||+|||++++++|++++..
T Consensus 400 ~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h--------------------- 458 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH--------------------- 458 (953)
T ss_pred cCCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc---------------------
Confidence 333445666666666655432 345679999999999999999999999632
Q ss_pred CCccccccccc-----c-cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH--------HHHHHHHHH--hc---cC
Q 001748 378 SRDVKEVDSVR-----I-NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE--------TWATVLNSL--EN---IS 438 (1018)
Q Consensus 378 ~~DvieIdaas-----~-~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~--------a~naLLk~L--Ee---pp 438 (1018)
+.+++... . ........++..+... .+.||++...|-|..+ .+..+...+ |. ..
T Consensus 459 ---~~evdc~el~~~s~~~~etkl~~~f~~a~~~----~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~ 531 (953)
T KOG0736|consen 459 ---LLEVDCYELVAESASHTETKLQAIFSRARRC----SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSC 531 (953)
T ss_pred ---eEeccHHHHhhcccchhHHHHHHHHHHHhhc----CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCC
Confidence 22332211 1 1112344455555422 3458888887766532 122222222 22 23
Q ss_pred CcEEEEEEecCCCcchHHHhcCcc-EEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCC-CHHHHHHHH
Q 001748 439 QHVVFVMITPELDKLPRSALSRSQ-KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNG-SIRDAEMLL 512 (1018)
Q Consensus 439 ~~vifILaTn~~~kL~~tI~SRcq-~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~G-nLR~Al~lL 512 (1018)
++++||.+++..+.+++.|++-+. .+.++.++++|..+||+.......+. .+.-++.++..+.| ..+++..++
T Consensus 532 ~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~ 606 (953)
T KOG0736|consen 532 PPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALV 606 (953)
T ss_pred CceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHh
Confidence 578889999999999999999876 79999999999999999888765543 23334556666665 444444433
No 264
>PRK04132 replication factor C small subunit; Provisional
Probab=97.91 E-value=4.6e-06 Score=104.37 Aligned_cols=51 Identities=33% Similarity=0.631 Sum_probs=47.1
Q ss_pred CcccccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHH
Q 001748 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSA 345 (1018)
Q Consensus 294 ~~~L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtL 345 (1018)
..||.+||||++|+|++||+++++.|++++..++++|. +|+||||+||+.+
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~-l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHL-LFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeE-EEECCCCCCcccc
Confidence 45899999999999999999999999999999999986 5999999999754
No 265
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.81 E-value=6.4e-05 Score=85.62 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=65.9
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc-ccccccccchhHHHHHHHHhcCCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK-EVDSVRINRSDRVGSLMKSAFLPPFS 408 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi-eIdaas~~~vd~IReLie~a~~~P~~ 408 (1018)
..++|+||+|+|||+||.++|+++..... . +.++.. .++. .+..............++.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~----------~-V~y~t~--~~l~~~l~~~~~~~~~~~~~~~~~l------ 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK----------S-VIYRTA--DELIEILREIRFNNDKELEEVYDLL------ 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC----------e-EEEEEH--HHHHHHHHHHHhccchhHHHHHHHh------
Confidence 67999999999999999999999852210 0 111111 0010 01000000001111112222
Q ss_pred CCceEEEEeCcccc--CHHHHHHHHHHHhccCC-cEEEEEEecCCC-----cchHHHhcCc----cEEEeCC
Q 001748 409 SRFKIFIIDECQLL--HGETWATVLNSLENISQ-HVVFVMITPELD-----KLPRSALSRS----QKYHFPK 468 (1018)
Q Consensus 409 g~~kVLIIDEaD~L--s~~a~naLLk~LEepp~-~vifILaTn~~~-----kL~~tI~SRc----q~I~F~~ 468 (1018)
....+|||||++.. +......|+.++++... ...+|++|+... .+.+.|.||+ .++.|..
T Consensus 245 ~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G 316 (329)
T PRK06835 245 INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYG 316 (329)
T ss_pred ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecC
Confidence 23469999999654 55567788888876532 334677777542 2345666664 3566644
No 266
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.80 E-value=1.4e-05 Score=83.31 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=54.8
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCC
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS 408 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~ 408 (1018)
...++|+||+|+|||++|.++++++..... .+..+....- +..+..... .....++++.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----------~v~f~~~~~L--~~~l~~~~~--~~~~~~~~~~l~~---- 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGY----------SVLFITASDL--LDELKQSRS--DGSYEELLKRLKR---- 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT------------EEEEEHHHH--HHHHHCCHC--CTTHCHHHHHHHT----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCc----------ceeEeecCce--ecccccccc--ccchhhhcCcccc----
Confidence 357999999999999999999998743110 1111110000 011111111 1122334444432
Q ss_pred CCceEEEEeCcccc--CHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 409 SRFKIFIIDECQLL--HGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 409 g~~kVLIIDEaD~L--s~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
..++||||+... +....+.|+.+++..-.+-..|++||..
T Consensus 109 --~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 109 --VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp --SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred --ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 358999999764 3445666777776543444567777754
No 267
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.76 E-value=5.2e-05 Score=80.10 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=68.5
Q ss_pred HHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHH
Q 001748 318 SLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGS 397 (1018)
Q Consensus 318 ~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IRe 397 (1018)
.+...+..+. +..++.||+|||||++++.+++.+..... -+.+..-.+.-..++..........|..
T Consensus 9 a~~~~l~~~~--~~~~l~G~aGtGKT~~l~~~~~~~~~~g~-----------~v~~~apT~~Aa~~L~~~~~~~a~Ti~~ 75 (196)
T PF13604_consen 9 AVRAILTSGD--RVSVLQGPAGTGKTTLLKALAEALEAAGK-----------RVIGLAPTNKAAKELREKTGIEAQTIHS 75 (196)
T ss_dssp HHHHHHHCTC--SEEEEEESTTSTHHHHHHHHHHHHHHTT-------------EEEEESSHHHHHHHHHHHTS-EEEHHH
T ss_pred HHHHHHhcCC--eEEEEEECCCCCHHHHHHHHHHHHHhCCC-----------eEEEECCcHHHHHHHHHhhCcchhhHHH
Confidence 3333444443 57899999999999999999887753210 0111111111111111110011122333
Q ss_pred HHHHhcCCC-----CCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC-------cchHHHhcCcc-EE
Q 001748 398 LMKSAFLPP-----FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD-------KLPRSALSRSQ-KY 464 (1018)
Q Consensus 398 Lie~a~~~P-----~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~-------kL~~tI~SRcq-~I 464 (1018)
++....... ......||||||+.++....+..|++.+... ...+|++....+ ..+..+..... .+
T Consensus 76 ~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~--~~klilvGD~~QL~pV~~g~~~~~l~~~~~~~~ 153 (196)
T PF13604_consen 76 FLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKS--GAKLILVGDPNQLPPVGAGSPFADLQESGGITV 153 (196)
T ss_dssp HTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSHHHCSTTCHHHHHCGCSTTEE
T ss_pred HHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhc--CCEEEEECCcchhcCCcCCcHHHHHHhcCCCeE
Confidence 332222111 1344579999999999999998999888873 445666654332 33344555544 55
Q ss_pred EeCCC
Q 001748 465 HFPKI 469 (1018)
Q Consensus 465 ~F~~l 469 (1018)
.+..+
T Consensus 154 ~L~~i 158 (196)
T PF13604_consen 154 ELTEI 158 (196)
T ss_dssp EE---
T ss_pred EeChh
Confidence 55433
No 268
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.69 E-value=0.00013 Score=87.65 Aligned_cols=205 Identities=18% Similarity=0.170 Sum_probs=114.9
Q ss_pred CcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccc
Q 001748 311 GQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRI 389 (1018)
Q Consensus 311 Gqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~ 389 (1018)
+.....+++.+.+++ -...-.+|+.|++||||..+|++|-+.-....+...-.|+..+.-. .+.. -+-++..+ .
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~l---iesE-LFGy~~Ga-f 391 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEAL---IESE-LFGYVAGA-F 391 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHh---hhHH-HhccCccc-c
Confidence 444444444443332 1222358999999999999999998765422111111121111100 0000 00000000 0
Q ss_pred cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc----------CCcEEEEEEecCC-------Cc
Q 001748 390 NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI----------SQHVVFVMITPEL-------DK 452 (1018)
Q Consensus 390 ~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep----------p~~vifILaTn~~-------~k 452 (1018)
.+ .. .+.-.-.+.......+|+||+..|.-+.|.+||.+|++- +-++.+|-+|+.. .+
T Consensus 392 Tg--a~---~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~ 466 (606)
T COG3284 392 TG--AR---RKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGR 466 (606)
T ss_pred cc--ch---hccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCC
Confidence 00 00 000011223345678999999999999999999999873 2245566666543 13
Q ss_pred chHHHhcCcc--EEEeCCCCh-hHHHHHHHHHHHHh---cCCCCHHHHHHHH-HHcCCCHHHHHHHHHHHHhh--CCccC
Q 001748 453 LPRSALSRSQ--KYHFPKIKD-GDIASRLRRICVEE---AINFDQAALDFIA-AKSNGSIRDAEMLLDQLSLL--GKKIT 523 (1018)
Q Consensus 453 L~~tI~SRcq--~I~F~~ls~-eEI~~~L~~iakke---gI~Id~eAL~~LA-~~s~GnLR~Al~lLeqLsl~--g~~IT 523 (1018)
+-+.|.=|.. ++.++++.+ .+-...|.++.+++ .+++++++++.|. -.-.||+|++.+.|+.+++. ++.|.
T Consensus 467 fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~ 546 (606)
T COG3284 467 FREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIR 546 (606)
T ss_pred chHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeE
Confidence 4455555655 666777765 23333344444443 5789999987655 45589999999999999875 44454
Q ss_pred HH
Q 001748 524 LS 525 (1018)
Q Consensus 524 ~e 525 (1018)
..
T Consensus 547 ~~ 548 (606)
T COG3284 547 VS 548 (606)
T ss_pred cc
Confidence 44
No 269
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00017 Score=79.43 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.3
Q ss_pred CCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 328 VTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 328 l~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
-...++|+||+|+|||++|-++++++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 345789999999999999999999985
No 270
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.68 E-value=0.00095 Score=87.78 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=102.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc
Q 001748 304 NFFDELVGQNVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi 382 (1018)
..|+++||.+..++.+...+..+ .-...+-++|+.|+||||+|++++..+.... .+.|...............
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F------~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF------QSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC------CeEEEeeccccccchhhcc
Confidence 46889999999999888877532 2346789999999999999999988774321 0111000000000000000
Q ss_pred ccccccccc-h----hHHHHHHHHhcC---------CCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEec
Q 001748 383 EVDSVRINR-S----DRVGSLMKSAFL---------PPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITP 448 (1018)
Q Consensus 383 eIdaas~~~-v----d~IReLie~a~~---------~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn 448 (1018)
..+...... . ..+.+++..... .-...++-+||+|+++.. ..+++|....+.......+|++|.
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeC
Confidence 000000000 0 001111100000 001234568889998753 345555554443334566777777
Q ss_pred CCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCCCC--HHHHHHHHHHcCCCHHHH
Q 001748 449 ELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFD--QAALDFIAAKSNGSIRDA 508 (1018)
Q Consensus 449 ~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id--~eAL~~LA~~s~GnLR~A 508 (1018)
+.+-+ ... .-..++....++.++..+.+...+-+....-+ .+....|++.++|-+-.+
T Consensus 333 d~~vl-~~~-~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 333 DKHFL-RAH-GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred cHHHH-Hhc-CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHH
Confidence 64321 111 11247888999998888888777644332211 133456788888866543
No 271
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.63 E-value=0.00024 Score=79.03 Aligned_cols=140 Identities=18% Similarity=0.227 Sum_probs=78.7
Q ss_pred HHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHH
Q 001748 320 LSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLM 399 (1018)
Q Consensus 320 ~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLi 399 (1018)
...+..+ ..+||+||+|+|||.+++.+-+.+... ..-+..+.-........+..++
T Consensus 27 ~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~l~~~---------------------~~~~~~~~~s~~Tts~~~q~~i 82 (272)
T PF12775_consen 27 DLLLSNG---RPVLLVGPSGTGKTSLIQNFLSSLDSD---------------------KYLVITINFSAQTTSNQLQKII 82 (272)
T ss_dssp HHHHHCT---EEEEEESSTTSSHHHHHHHHHHCSTTC---------------------CEEEEEEES-TTHHHHHHHHCC
T ss_pred HHHHHcC---CcEEEECCCCCchhHHHHhhhccCCcc---------------------ccceeEeeccCCCCHHHHHHHH
Confidence 3444544 468999999999999998876544211 0001111112222223333333
Q ss_pred HHh-------cCCCCCCCceEEEEeCccccCHH------HHHHHHHHHhcc------------CCcEEEEEEecCC---C
Q 001748 400 KSA-------FLPPFSSRFKIFIIDECQLLHGE------TWATVLNSLENI------------SQHVVFVMITPEL---D 451 (1018)
Q Consensus 400 e~a-------~~~P~~g~~kVLIIDEaD~Ls~~------a~naLLk~LEep------------p~~vifILaTn~~---~ 451 (1018)
+.. .+.|..+++-|++|||+++-..+ ..+.|..+++.- -.++.||.+.+.. .
T Consensus 83 e~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~ 162 (272)
T PF12775_consen 83 ESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRN 162 (272)
T ss_dssp CTTECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--
T ss_pred hhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCC
Confidence 221 13344566779999999887654 344555555531 1255666555422 2
Q ss_pred cchHHHhcCccEEEeCCCChhHHHHHHHHHHH
Q 001748 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICV 483 (1018)
Q Consensus 452 kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iak 483 (1018)
.+.+.+.+.+.++.+..++.+.+..+...++.
T Consensus 163 ~is~R~~r~f~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 163 PISPRFLRHFNILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp SHHHHHHTTEEEEE----TCCHHHHHHHHHHH
T ss_pred CCChHHhhheEEEEecCCChHHHHHHHHHHHh
Confidence 57889999999999999999999888776664
No 272
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00061 Score=80.14 Aligned_cols=145 Identities=18% Similarity=0.276 Sum_probs=86.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSS 409 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g 409 (1018)
-.+||+||+|+|||+||-.+|..-..+. +.+.+.. +.+ .-........|+.+++.+...|.
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPF-------------vKiiSpe--~mi--G~sEsaKc~~i~k~F~DAYkS~l-- 599 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPF-------------VKIISPE--DMI--GLSESAKCAHIKKIFEDAYKSPL-- 599 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCe-------------EEEeChH--Hcc--CccHHHHHHHHHHHHHHhhcCcc--
Confidence 3599999999999999999988654221 1111110 111 11112234568888888866554
Q ss_pred CceEEEEeCccccCH----------HHHHHHHHHHhccCC--cEEEEEEecCCCcchHH--HhcCcc-EEEeCCCCh-hH
Q 001748 410 RFKIFIIDECQLLHG----------ETWATVLNSLENISQ--HVVFVMITPELDKLPRS--ALSRSQ-KYHFPKIKD-GD 473 (1018)
Q Consensus 410 ~~kVLIIDEaD~Ls~----------~a~naLLk~LEepp~--~vifILaTn~~~kL~~t--I~SRcq-~I~F~~ls~-eE 473 (1018)
.|+|||++++|.. ....+|+-+|...|+ +-.||++|+..-.++.. |..-+. .++.+.++. ++
T Consensus 600 --siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 600 --SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred --eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 5999999988742 245566666666554 46788887765433332 333344 688888876 56
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001748 474 IASRLRRICVEEAINFDQAALDFIAAK 500 (1018)
Q Consensus 474 I~~~L~~iakkegI~Id~eAL~~LA~~ 500 (1018)
+.++|+. .++ +.++....++..
T Consensus 678 ~~~vl~~----~n~-fsd~~~~~~~~~ 699 (744)
T KOG0741|consen 678 LLEVLEE----LNI-FSDDEVRAIAEQ 699 (744)
T ss_pred HHHHHHH----ccC-CCcchhHHHHHH
Confidence 6665543 232 344444444433
No 273
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.62 E-value=0.00052 Score=82.73 Aligned_cols=124 Identities=18% Similarity=0.187 Sum_probs=74.3
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCCCC
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSR 410 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~ 410 (1018)
++||+|.||||||.+.+.+++.+-.- .+.+|....-.-+.+.-... .+-++++-+. -+-+.++
T Consensus 464 NILL~GDPGtsKSqlLqyv~~l~pRg---------------~yTSGkGsSavGLTayVtrd-~dtkqlVLes-GALVLSD 526 (804)
T KOG0478|consen 464 NILLVGDPGTSKSQLLQYCHRLLPRG---------------VYTSGKGSSAVGLTAYVTKD-PDTRQLVLES-GALVLSD 526 (804)
T ss_pred eEEEecCCCcCHHHHHHHHHHhCCcc---------------eeecCCccchhcceeeEEec-Cccceeeeec-CcEEEcC
Confidence 59999999999999999998876311 22333221111111100000 0112222111 1123456
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHhcc-------------CCcEEEEEEecCC------C-------cchHHHhcCccEE
Q 001748 411 FKIFIIDECQLLHGETWATVLNSLENI-------------SQHVVFVMITPEL------D-------KLPRSALSRSQKY 464 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~~a~naLLk~LEep-------------p~~vifILaTn~~------~-------kL~~tI~SRcq~I 464 (1018)
..|--|||+|+|+..+.+.|+..||.- +..+-+|.++|-. . .|+++|+|||..|
T Consensus 527 ~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLI 606 (804)
T KOG0478|consen 527 NGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLI 606 (804)
T ss_pred CceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEE
Confidence 779999999999999999999999852 3344455555511 1 5789999999943
Q ss_pred --EeCCCCh
Q 001748 465 --HFPKIKD 471 (1018)
Q Consensus 465 --~F~~ls~ 471 (1018)
-|.++++
T Consensus 607 ylllD~~DE 615 (804)
T KOG0478|consen 607 FLLLDKPDE 615 (804)
T ss_pred EEEecCcch
Confidence 4455544
No 274
>PRK09183 transposase/IS protein; Provisional
Probab=97.62 E-value=0.00019 Score=79.10 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=55.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccc-ccccccccchhHHHHHHHHhcCCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK-EVDSVRINRSDRVGSLMKSAFLPPFS 408 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvi-eIdaas~~~vd~IReLie~a~~~P~~ 408 (1018)
..++|+||+|+|||++|.+++..+.... . . +.+.... ++. .+...... ..+..++... .
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G-~---------~-v~~~~~~--~l~~~l~~a~~~--~~~~~~~~~~-----~ 162 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAG-I---------K-VRFTTAA--DLLLQLSTAQRQ--GRYKTTLQRG-----V 162 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcC-C---------e-EEEEeHH--HHHHHHHHHHHC--CcHHHHHHHH-----h
Confidence 4689999999999999999988753110 0 0 0111110 000 11111100 1122233221 1
Q ss_pred CCceEEEEeCcccc--CHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 409 SRFKIFIIDECQLL--HGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 409 g~~kVLIIDEaD~L--s~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
....++||||++.+ .....+.|+.+++.......+|++|+.+
T Consensus 163 ~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 163 MAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred cCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 23469999999874 4556667888886543333467777764
No 275
>PHA00729 NTP-binding motif containing protein
Probab=97.61 E-value=0.00027 Score=76.40 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=71.1
Q ss_pred HHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHH
Q 001748 317 RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVG 396 (1018)
Q Consensus 317 ~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IR 396 (1018)
....+.+..+.+ ..++|+|+||+|||++|.++++.++-.......+- .....+. ....++ .+.+.
T Consensus 6 k~~~~~l~~~~f-~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~------~~~d~~~--~~~fid------~~~Ll 70 (226)
T PHA00729 6 KKIVSAYNNNGF-VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKD------DAWQYVQ--NSYFFE------LPDAL 70 (226)
T ss_pred HHHHHHHhcCCe-EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchh------hHHhcCC--cEEEEE------HHHHH
Confidence 345555666666 46899999999999999999998751100000000 0000000 011111 12222
Q ss_pred HHHHHhcCCCCCCCceEEEEeCccccCHH-HHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCCChhHHH
Q 001748 397 SLMKSAFLPPFSSRFKIFIIDECQLLHGE-TWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475 (1018)
Q Consensus 397 eLie~a~~~P~~g~~kVLIIDEaD~Ls~~-a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~ 475 (1018)
+.+..+... ..+..++||||+..-... .+. .+. + ..-..+.++++||+..+.|.+++++++.
T Consensus 71 ~~L~~a~~~--~~~~dlLIIDd~G~~~~~~~wh-----~~~--------~--~~yf~L~~aLrSR~~l~il~~ls~edL~ 133 (226)
T PHA00729 71 EKIQDAIDN--DYRIPLIIFDDAGIWLSKYVWY-----EDY--------M--KTFYKIYALIRTRVSAVIFTTPSPEDLA 133 (226)
T ss_pred HHHHHHHhc--CCCCCEEEEeCCchhhcccchh-----hhc--------c--chHHHHHHHHHhhCcEEEEecCCHHHHH
Confidence 222222111 122358999996533211 110 010 0 1112467889999999999999999998
Q ss_pred HHHHH
Q 001748 476 SRLRR 480 (1018)
Q Consensus 476 ~~L~~ 480 (1018)
..|+.
T Consensus 134 ~~Lr~ 138 (226)
T PHA00729 134 FYLRE 138 (226)
T ss_pred HHHHh
Confidence 88765
No 276
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.57 E-value=0.0016 Score=76.22 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=58.6
Q ss_pred ccCCCCcccccCcHHHHHHHHH---HHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccC
Q 001748 300 KFRPNFFDELVGQNVVVRSLLS---AISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSG 376 (1018)
Q Consensus 300 KyRP~tFddLVGqe~iv~~L~~---aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG 376 (1018)
-|.|..|++ ...+..|.. +++.+ ..+++.||+|||||+++.+++....|. +|
T Consensus 184 G~~P~~~~~----r~k~~~L~rl~~fve~~---~Nli~lGp~GTGKThla~~l~~~~a~~------------------sG 238 (449)
T TIGR02688 184 GYEPEGFEA----RQKLLLLARLLPLVEPN---YNLIELGPKGTGKSYIYNNLSPYVILI------------------SG 238 (449)
T ss_pred CCCcccCCh----HHHHHHHHhhHHHHhcC---CcEEEECCCCCCHHHHHHHHhHHHHHH------------------cC
Confidence 377777753 344444443 45544 468999999999999999988773222 12
Q ss_pred CCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccC----HHHHHHHHHHHhc
Q 001748 377 RSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLH----GETWATVLNSLEN 436 (1018)
Q Consensus 377 ~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls----~~a~naLLk~LEe 436 (1018)
.... .+ +-+.++.. ......+.+++|||||+..+. .+....|..+|+.
T Consensus 239 ~f~T-----~a-----~Lf~~L~~--~~lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMes 290 (449)
T TIGR02688 239 GTIT-----VA-----KLFYNIST--RQIGLVGRWDVVAFDEVATLKFAKPKELIGILKNYMES 290 (449)
T ss_pred CcCc-----HH-----HHHHHHHH--HHHhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHh
Confidence 1110 00 11111111 111234567899999999854 2356777777874
No 277
>PF14516 AAA_35: AAA-like domain
Probab=97.56 E-value=0.01 Score=67.78 Aligned_cols=208 Identities=16% Similarity=0.144 Sum_probs=113.8
Q ss_pred ccCcHHHHHHHHHHHHc-CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCC--------CCCCCC-c-----ccccee
Q 001748 309 LVGQNVVVRSLLSAISR-GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED--------QKPCGL-C-----RECALF 373 (1018)
Q Consensus 309 LVGqe~iv~~L~~aIk~-grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~--------~~PCg~-C-----~sc~~i 373 (1018)
.|....+-+.+.+.|.+ |. .+.+.||+.+|||++...+.+.+....... ...... . ..|..+
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~---~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGS---YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred ccCchHHHHHHHHHHhcCCC---EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 45666677778888776 54 589999999999999999988775321100 000000 0 000000
Q ss_pred ccCCCCccccccc---ccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCH--HHHHHHHHHH----hc-----cCC
Q 001748 374 SSGRSRDVKEVDS---VRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG--ETWATVLNSL----EN-----ISQ 439 (1018)
Q Consensus 374 ~sG~~~DvieIda---as~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~--~a~naLLk~L----Ee-----pp~ 439 (1018)
...-..+. .++. ............+++.. .....++-|++|||+|.+.. .....|+..| ++ ...
T Consensus 90 ~~~L~l~~-~l~~~w~~~~~~~~~~~~~~~~~l-l~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 90 SRQLKLDE-KLDEYWDEEIGSKISCTEYFEEYL-LKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHcCCCh-hHHHHHHHhcCChhhHHHHHHHHH-HhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 00000000 0000 00011122222333211 11113456999999998875 2223333332 22 123
Q ss_pred cEEEEEEecCCCcchHHH----hcCccEEEeCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 440 HVVFVMITPELDKLPRSA----LSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL 515 (1018)
Q Consensus 440 ~vifILaTn~~~kL~~tI----~SRcq~I~F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqL 515 (1018)
...||++......+...+ -.-+..+.++..+.+|+...++ +.+..+++..++.|...++|.+--...++..+
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWTGGHPYLVQKACYLL 243 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566777654322222111 1235578889999999877654 45777889999999999999997777777666
Q ss_pred HhhCCccCHHHH
Q 001748 516 SLLGKKITLSLA 527 (1018)
Q Consensus 516 sl~g~~IT~edV 527 (1018)
.. ..++.+.+
T Consensus 244 ~~--~~~~~~~l 253 (331)
T PF14516_consen 244 VE--EQITLEQL 253 (331)
T ss_pred HH--ccCcHHHH
Confidence 54 35565544
No 278
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.002 Score=79.28 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=86.2
Q ss_pred cccccCcHHHHHHHHHHHHcCCC-----------CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceec
Q 001748 306 FDELVGQNVVVRSLLSAISRGMV-----------TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFS 374 (1018)
Q Consensus 306 FddLVGqe~iv~~L~~aIk~grl-----------~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~ 374 (1018)
.-.+.|++.+++.|.-++-.|-. --++||.|.|||||+.+.+.+++.+-. ..+.
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr---------------~vyt 349 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR---------------GVYT 349 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc---------------eEEE
Confidence 44577999998888877754411 135999999999999999999876521 1222
Q ss_pred cCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-------------CCcE
Q 001748 375 SGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-------------SQHV 441 (1018)
Q Consensus 375 sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-------------p~~v 441 (1018)
+|....-..+.++-..... ..+..-++ -+-..+...|..|||+|.|......+|...||.. +..+
T Consensus 350 sgkgss~~GLTAav~rd~~-tge~~Lea-GALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 350 SGKGSSAAGLTAAVVRDKV-TGEWVLEA-GALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred ccccccccCceeEEEEccC-CCeEEEeC-CEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 3322222222221110000 00000000 1112356779999999999999999999999963 1222
Q ss_pred EEEEEecCCC-------------cchHHHhcCccEEEe
Q 001748 442 VFVMITPELD-------------KLPRSALSRSQKYHF 466 (1018)
Q Consensus 442 ifILaTn~~~-------------kL~~tI~SRcq~I~F 466 (1018)
-++.++|-.. .++++|+|||..+.+
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifv 465 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFV 465 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEE
Confidence 2333443211 578899999995444
No 279
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.54 E-value=6.1e-05 Score=76.74 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=33.9
Q ss_pred cccCcHHHHHHHHHHH--HcCCCCcEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 308 ELVGQNVVVRSLLSAI--SRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aI--k~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
.++|.+..++.|...+ ..+.-++.++++|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3799999999999998 344455789999999999999999988877543
No 280
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.52 E-value=0.0046 Score=72.45 Aligned_cols=135 Identities=15% Similarity=0.211 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchh
Q 001748 314 VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSD 393 (1018)
Q Consensus 314 ~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd 393 (1018)
+....+.+.+..... +++++||+++||||+++.+.+.+... ..+. .+-++........+
T Consensus 24 ~~~~~l~~~~~~~~~--i~~i~GpR~~GKTtll~~l~~~~~~~--------------~iy~-----~~~d~~~~~~~l~d 82 (398)
T COG1373 24 KLLPRLIKKLDLRPF--IILILGPRQVGKTTLLKLLIKGLLEE--------------IIYI-----NFDDLRLDRIELLD 82 (398)
T ss_pred hhhHHHHhhcccCCc--EEEEECCccccHHHHHHHHHhhCCcc--------------eEEE-----EecchhcchhhHHH
Confidence 344444444443322 89999999999999998887765310 0011 01111111111112
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCCC----cchHHHhcCccEEEeCCC
Q 001748 394 RVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD----KLPRSALSRSQKYHFPKI 469 (1018)
Q Consensus 394 ~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~~----kL~~tI~SRcq~I~F~~l 469 (1018)
..+.+.+.... ....+|+||+|.+.. |...++.+-+.... -++++++... ++...+.-|...+.+.|+
T Consensus 83 ~~~~~~~~~~~-----~~~yifLDEIq~v~~--W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 83 LLRAYIELKER-----EKSYIFLDEIQNVPD--WERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred HHHHHHHhhcc-----CCceEEEecccCchh--HHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 23333222211 456899999999864 55555555443333 3444444332 455677788889999999
Q ss_pred ChhHHHHH
Q 001748 470 KDGDIASR 477 (1018)
Q Consensus 470 s~eEI~~~ 477 (1018)
+-.|....
T Consensus 155 SF~Efl~~ 162 (398)
T COG1373 155 SFREFLKL 162 (398)
T ss_pred CHHHHHhh
Confidence 98888653
No 281
>PRK04296 thymidine kinase; Provisional
Probab=97.50 E-value=0.00078 Score=70.82 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=56.3
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccC--CCCccccc-ccccc----cchhHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSG--RSRDVKEV-DSVRI----NRSDRVGSLMKSA 402 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG--~~~DvieI-daas~----~~vd~IReLie~a 402 (1018)
...|++||+|+|||+++..++..+.... ..+..+..+ .......+ ..... .......+++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g----------~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~ 72 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG----------MKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELI 72 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC----------CeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHH
Confidence 4689999999999999988888764221 112222110 00000000 00000 0011223333333
Q ss_pred cCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEec
Q 001748 403 FLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITP 448 (1018)
Q Consensus 403 ~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn 448 (1018)
.. ..+.+.||+|||++.|..+....|++.+... .+.+|++.-
T Consensus 73 ~~--~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~--g~~vi~tgl 114 (190)
T PRK04296 73 EE--EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDL--GIPVICYGL 114 (190)
T ss_pred Hh--hCCCCCEEEEEccccCCHHHHHHHHHHHHHc--CCeEEEEec
Confidence 22 2456789999999999877666677776553 344555543
No 282
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.49 E-value=0.0011 Score=72.08 Aligned_cols=141 Identities=17% Similarity=0.141 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccch
Q 001748 313 NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS 392 (1018)
Q Consensus 313 e~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~v 392 (1018)
+.....|..++... ..-.++||.|||||++++.+|+.++.. ++.++.......
T Consensus 19 ~r~~~~l~~al~~~---~~~~~~GpagtGKtetik~La~~lG~~------------------------~~vfnc~~~~~~ 71 (231)
T PF12774_consen 19 DRCFLTLTQALSLN---LGGALSGPAGTGKTETIKDLARALGRF------------------------VVVFNCSEQMDY 71 (231)
T ss_dssp HHHHHHHHHHHCTT---TEEEEESSTTSSHHHHHHHHHHCTT--------------------------EEEEETTSSS-H
T ss_pred HHHHHHHHHHhccC---CCCCCcCCCCCCchhHHHHHHHHhCCe------------------------EEEecccccccH
Confidence 45556677777554 234689999999999999999998742 122222222233
Q ss_pred hHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHh-------cc-------------CCcEEEEEEec----
Q 001748 393 DRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLE-------NI-------------SQHVVFVMITP---- 448 (1018)
Q Consensus 393 d~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LE-------ep-------------p~~vifILaTn---- 448 (1018)
..+..++.-+... ...+.+||+++|..++...+-..+. +. .+++.+.++.+
T Consensus 72 ~~l~ril~G~~~~-----GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~ 146 (231)
T PF12774_consen 72 QSLSRILKGLAQS-----GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYA 146 (231)
T ss_dssp HHHHHHHHHHHHH-----T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CC
T ss_pred HHHHHHHHHHhhc-----CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccC
Confidence 4455555444321 2479999999999886555433332 11 12233333333
Q ss_pred CCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHhcCC
Q 001748 449 ELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAIN 488 (1018)
Q Consensus 449 ~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakkegI~ 488 (1018)
....+|+.|+.-++.+.+..|+...|.+.+ +-..|..
T Consensus 147 gr~~LP~nLk~lFRpvam~~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 147 GRSELPENLKALFRPVAMMVPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp CC--S-HHHCTTEEEEE--S--HHHHHHHH---HHCCCTS
T ss_pred CcccCCHhHHHHhheeEEeCCCHHHHHHHH---HHHcCch
Confidence 124799999999999999988877666653 3344553
No 283
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.47 E-value=0.00018 Score=74.44 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=68.8
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC--Cccccccc------cccc-----chh--H-
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS--RDVKEVDS------VRIN-----RSD--R- 394 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~--~DvieIda------as~~-----~vd--~- 394 (1018)
.++|+|+||+||||+++.+.+.+.... ...||..-.... ..|.. +++..+.. +... .+. .
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~---~~v~Gf~t~evr-~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v 76 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG---LPVGGFYTEEVR-ENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFV 76 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC---GGEEEEEEEEEE-TTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC---CccceEEeeccc-CCCceEEEEEEECcCCCccccccccccccccCCCEEE
Confidence 379999999999999999999883211 012222211111 11211 11111100 0000 000 0
Q ss_pred HHHHHHHhcCCCCC---CCceEEEEeCcccc---CHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcC--ccEEEe
Q 001748 395 VGSLMKSAFLPPFS---SRFKIFIIDECQLL---HGETWATVLNSLENISQHVVFVMITPELDKLPRSALSR--SQKYHF 466 (1018)
Q Consensus 395 IReLie~a~~~P~~---g~~kVLIIDEaD~L---s~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SR--cq~I~F 466 (1018)
.-+.++.+...... ....++||||+..| +....+++.+.|+. +..++.++-......+.+.|.+| +.++.+
T Consensus 77 ~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s-~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~v 155 (168)
T PF03266_consen 77 DLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDS-NKPVIGVVHKRSDNPFLEEIKRRPDVKIFEV 155 (168)
T ss_dssp -HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCT-TSEEEEE--SS--SCCHHHHHTTTTSEEEE-
T ss_pred cHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcC-CCcEEEEEecCCCcHHHHHHHhCCCcEEEEe
Confidence 11223332221111 35579999999866 45677888888883 22222222222234688999998 778888
Q ss_pred CCCChhHHHHH
Q 001748 467 PKIKDGDIASR 477 (1018)
Q Consensus 467 ~~ls~eEI~~~ 477 (1018)
.+-..+.+...
T Consensus 156 t~~NRd~l~~~ 166 (168)
T PF03266_consen 156 TEENRDALPEE 166 (168)
T ss_dssp -TTTCCCHHHH
T ss_pred ChhHHhhHhhh
Confidence 87777666543
No 284
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.47 E-value=0.002 Score=72.67 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=86.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC-CCccccccc----
Q 001748 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR-SRDVKEVDS---- 386 (1018)
Q Consensus 312 qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~-~~DvieIda---- 386 (1018)
|.++.+.+++.+..|.- +.+++.||+|.|||.+....-... -...+.. -..-.+|. +.|-+-+.+
T Consensus 33 ~~~l~~~lkqt~~~gEs-nsviiigprgsgkT~li~~~Ls~~-q~~~E~~--------l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 33 QKHLSELLKQTILHGES-NSVIIIGPRGSGKTILIDTRLSDI-QENGENF--------LLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred HHHHHHHHHHHHHhcCC-CceEEEccCCCCceEeeHHHHhhH-HhcCCeE--------EEEEECccchhhHHHHHHHHHH
Confidence 44555566666666664 678999999999999875443331 1111100 00011111 111001100
Q ss_pred ----------ccccchhHHHHHHHHhcCCCCC-CCceEEEEeCccccCHHHHH-HHHHHHh---ccCCcEEEEEEecCCC
Q 001748 387 ----------VRINRSDRVGSLMKSAFLPPFS-SRFKIFIIDECQLLHGETWA-TVLNSLE---NISQHVVFVMITPELD 451 (1018)
Q Consensus 387 ----------as~~~vd~IReLie~a~~~P~~-g~~kVLIIDEaD~Ls~~a~n-aLLk~LE---epp~~vifILaTn~~~ 451 (1018)
....-.+.+..+++.+...-.. +..-|+|+||+|.+.+.... .|.++++ .....+.+|++|+..+
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 0011123444455444432222 23356677899988765433 3444444 3455788888998876
Q ss_pred ---cchHHHhcCcc---EEEeCCCChhHHHHHHHHHH
Q 001748 452 ---KLPRSALSRSQ---KYHFPKIKDGDIASRLRRIC 482 (1018)
Q Consensus 452 ---kL~~tI~SRcq---~I~F~~ls~eEI~~~L~~ia 482 (1018)
.+-+.++|||- ++.++..+-++....++...
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 56688999986 34445555677777766554
No 285
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.42 E-value=0.011 Score=65.56 Aligned_cols=185 Identities=20% Similarity=0.226 Sum_probs=105.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCC----
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP---- 405 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~---- 405 (1018)
..+|+.||.|.||+.+|+.+-..-...+ -++| .+++++.+...+...+..++..+.-.
T Consensus 209 ~p~ll~gptgagksflarriyelk~arh---------------q~sg---~fvevncatlrgd~amsalfghvkgaftga 270 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARH---------------QFSG---AFVEVNCATLRGDTAMSALFGHVKGAFTGA 270 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHH---------------hcCC---ceEEEeeeeecCchHHHHHHhhhccccccc
Confidence 3589999999999999998865322111 1122 24455555444444444444333210
Q ss_pred -------CCCCCceEEEEeCccccCHHHHHHHHHHHhccCC-----------cEEEEEEecC-------CCcchHHHhcC
Q 001748 406 -------PFSSRFKIFIIDECQLLHGETWATVLNSLENISQ-----------HVVFVMITPE-------LDKLPRSALSR 460 (1018)
Q Consensus 406 -------P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~-----------~vifILaTn~-------~~kL~~tI~SR 460 (1018)
-..+...++++||+..|..+.+..|||.+|+..- +.-+|.-|.. ...+-+.+..|
T Consensus 271 ~~~r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ar 350 (531)
T COG4650 271 RESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 (531)
T ss_pred hhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHh
Confidence 0123567999999999999999999999997321 1111111111 01233445556
Q ss_pred ccEEEeCCCCh----hHHH----HHHHHHHHHhc--CCCCHHHHHH-HHHH------cCCCHHHHHHHHHHHHhh--CCc
Q 001748 461 SQKYHFPKIKD----GDIA----SRLRRICVEEA--INFDQAALDF-IAAK------SNGSIRDAEMLLDQLSLL--GKK 521 (1018)
Q Consensus 461 cq~I~F~~ls~----eEI~----~~L~~iakkeg--I~Id~eAL~~-LA~~------s~GnLR~Al~lLeqLsl~--g~~ 521 (1018)
.-...|.-|.. ++|. --|.+.+...| +.+..+|-.. |+-. -.||.|.+-..+..++.. +++
T Consensus 351 inlwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~gr 430 (531)
T COG4650 351 INLWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGR 430 (531)
T ss_pred hheeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCc
Confidence 55444433221 2221 22445555444 4455565433 3322 249999999999888754 678
Q ss_pred cCHHHHHHHhc
Q 001748 522 ITLSLAYELIG 532 (1018)
Q Consensus 522 IT~edV~ellg 532 (1018)
||.+.|++-++
T Consensus 431 it~~~ve~ei~ 441 (531)
T COG4650 431 ITLDVVEDEIN 441 (531)
T ss_pred eeHHHHHHHHH
Confidence 99998876543
No 286
>PHA02774 E1; Provisional
Probab=97.41 E-value=0.00085 Score=80.78 Aligned_cols=138 Identities=16% Similarity=0.133 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhH
Q 001748 315 VVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDR 394 (1018)
Q Consensus 315 iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~ 394 (1018)
....|+.+++...-.+.++|+||||||||++|.+|++.++.. .+..+....++ +
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~------------vi~fvN~~s~F---w----------- 473 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK------------VISFVNSKSHF---W----------- 473 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC------------EEEEEECcccc---c-----------
Confidence 335555555433223689999999999999999999988511 01111111111 0
Q ss_pred HHHHHHHhcCCCCCCCceEEEEeCccccC-HHHHHHHHHHHhccCC-------------cEEEEEEecCCC---cchHHH
Q 001748 395 VGSLMKSAFLPPFSSRFKIFIIDECQLLH-GETWATVLNSLENISQ-------------HVVFVMITPELD---KLPRSA 457 (1018)
Q Consensus 395 IReLie~a~~~P~~g~~kVLIIDEaD~Ls-~~a~naLLk~LEepp~-------------~vifILaTn~~~---kL~~tI 457 (1018)
..|. ...+|++|||+-.-. .-....|...|+..+- ...+|++||..- .-...|
T Consensus 474 ---------Lqpl-~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL 543 (613)
T PHA02774 474 ---------LQPL-ADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYL 543 (613)
T ss_pred ---------cchh-ccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHh
Confidence 1111 245799999992211 1123356667765420 124667776432 335789
Q ss_pred hcCccEEEeCCC-------------ChhHHHHHHHHHHHHhcCC
Q 001748 458 LSRSQKYHFPKI-------------KDGDIASRLRRICVEEAIN 488 (1018)
Q Consensus 458 ~SRcq~I~F~~l-------------s~eEI~~~L~~iakkegI~ 488 (1018)
.||...+.|+.+ +......++++...+.++.
T Consensus 544 ~sRi~~f~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 544 HSRITVFEFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred hhhEEEEECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 999999998633 3455666677777666654
No 287
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.0017 Score=66.63 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=67.6
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC--Ccccccccc----------cc-------
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS--RDVKEVDSV----------RI------- 389 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~--~DvieIdaa----------s~------- 389 (1018)
+.-++++|+||+||||++..++..|.... ...+|..-.-+. ..|.. |.++.+..- +.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR-~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVR-EGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeee-cCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 34589999999999999999999885331 111111111000 11111 222222100 00
Q ss_pred cchhHHHHHHHHhcCCCCCCCceEEEEeCccccC---HHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCccEEEe
Q 001748 390 NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLH---GETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHF 466 (1018)
Q Consensus 390 ~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls---~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F 466 (1018)
-.++.+.++...+-...+ ....|+||||+..|- .....++-.+|....+ +++.+--+..+-+...++++...+-|
T Consensus 81 V~v~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp-liatlHrrsr~P~v~~ik~~~~v~v~ 158 (179)
T COG1618 81 VNVEGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP-LIATLHRRSRHPLVQRIKKLGGVYVF 158 (179)
T ss_pred eeHHHHHHHhHHHHHHHh-hcCCEEEEecccchhhccHHHHHHHHHHhcCCCc-EEEEEecccCChHHHHhhhcCCEEEE
Confidence 012233322221111111 124699999998763 3344455555554332 44444444456678888988887775
No 288
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.25 E-value=0.019 Score=64.41 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCCceEEEEeCccccCHHHHHHHHHHHhccC--CcEEEEEEecCCC---------------cchHH-HhcCcc-EEEeCC
Q 001748 408 SSRFKIFIIDECQLLHGETWATVLNSLENIS--QHVVFVMITPELD---------------KLPRS-ALSRSQ-KYHFPK 468 (1018)
Q Consensus 408 ~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp--~~vifILaTn~~~---------------kL~~t-I~SRcq-~I~F~~ 468 (1018)
...+-|+||||.|++.++....++..+...- ++++||++..... ..-.. |..-++ .+.+++
T Consensus 170 ~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~ 249 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPP 249 (325)
T ss_pred CCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCC
Confidence 4556799999999999886666665554322 5788888875321 01112 333344 588899
Q ss_pred CChhHHHHHHHHHHHH
Q 001748 469 IKDGDIASRLRRICVE 484 (1018)
Q Consensus 469 ls~eEI~~~L~~iakk 484 (1018)
+...++..++...+.+
T Consensus 250 ~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 250 PSPSDLERYLNELLES 265 (325)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999998888877554
No 289
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.23 E-value=0.0026 Score=72.86 Aligned_cols=211 Identities=16% Similarity=0.191 Sum_probs=110.9
Q ss_pred cccCcHHHHHHHHHHHHcC--CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC---Cccc
Q 001748 308 ELVGQNVVVRSLLSAISRG--MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS---RDVK 382 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aIk~g--rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~---~Dvi 382 (1018)
.+.+.+..+..|...+-.. .+|.++.|||..|||||.+.+.+-+.++-++... .|..|+.+...-. .++.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~-----n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWL-----NCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceee-----ehHHhccHHHHHHHHHHHhc
Confidence 4567888889998888643 4778889999999999999999999885443221 2333432221100 0000
Q ss_pred ccc--cccccc-hhHHHHHHHHhcC---CCCCCCceEEEEeCccccCHH---HHHHHHHHHhccCC-cEEEEEEecCCCc
Q 001748 383 EVD--SVRINR-SDRVGSLMKSAFL---PPFSSRFKIFIIDECQLLHGE---TWATVLNSLENISQ-HVVFVMITPELDK 452 (1018)
Q Consensus 383 eId--aas~~~-vd~IReLie~a~~---~P~~g~~kVLIIDEaD~Ls~~---a~naLLk~LEepp~-~vifILaTn~~~k 452 (1018)
..+ +...++ .+.+.+++..... ....+..-++|+|.+|.+..- .++.|++.-|-.+. .++||+.....++
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 000 000011 1333333333322 112234568889999988642 34445444433222 4555555544432
Q ss_pred chHHHhc--CccEEEeCCCChhHHHHHHHHHHH-HhcCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHH-hhCCccC
Q 001748 453 LPRSALS--RSQKYHFPKIKDGDIASRLRRICV-EEAINFDQAALDFIAA---KSNGSIRDAEMLLDQLS-LLGKKIT 523 (1018)
Q Consensus 453 L~~tI~S--Rcq~I~F~~ls~eEI~~~L~~iak-kegI~Id~eAL~~LA~---~s~GnLR~Al~lLeqLs-l~g~~IT 523 (1018)
....=.+ -...+.|+.++.+++..++.+--- +....+-..-+..+.. .+-+++..+...++... .+-++||
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpky~epi~ 239 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPKYCEPIT 239 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhccccc
Confidence 2211011 123799999999999988764221 1111111111222222 12358888888887763 3334443
No 290
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.19 E-value=0.001 Score=65.88 Aligned_cols=49 Identities=35% Similarity=0.437 Sum_probs=39.1
Q ss_pred ccccCcHHHHHHHHHHHHc------CCCCcEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 307 DELVGQNVVVRSLLSAISR------GMVTSFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~------grl~~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
..|.||.-+++.+.++|+. .+-|-++-|+|++|||||.+++.||+.+..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 3478999888888777753 233455779999999999999999999864
No 291
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.19 E-value=0.0012 Score=84.89 Aligned_cols=141 Identities=17% Similarity=0.191 Sum_probs=88.0
Q ss_pred HHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccch--hHH
Q 001748 318 SLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS--DRV 395 (1018)
Q Consensus 318 ~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~v--d~I 395 (1018)
.+.+++.-+ ..+||.|.||+|||+++.++|+..+.. |..+.-....|+..+-++..... .++
T Consensus 1535 rVlRAmqv~---kpilLEGsPGVGKTSlItaLAr~tG~k-------------liRINLSeQTdL~DLfGsd~Pve~~Gef 1598 (4600)
T COG5271 1535 RVLRAMQVG---KPILLEGSPGVGKTSLITALARKTGKK-------------LIRINLSEQTDLCDLFGSDLPVEEGGEF 1598 (4600)
T ss_pred HHHHHHhcC---CceeecCCCCccHHHHHHHHHHHhcCc-------------eEEeeccccchHHHHhCCCCCcccCcee
Confidence 344444444 468999999999999999999988632 34444333334333322211100 011
Q ss_pred H----HHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----CC--------cEEEEEEecCCC-------
Q 001748 396 G----SLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----SQ--------HVVFVMITPELD------- 451 (1018)
Q Consensus 396 R----eLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----p~--------~vifILaTn~~~------- 451 (1018)
+ .++.. +....-+++||+...+..+.+.|-..|+.. |. .-..|+++.+|.
T Consensus 1599 ~w~dapfL~a------mr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRK 1672 (4600)
T COG5271 1599 RWMDAPFLHA------MRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRK 1672 (4600)
T ss_pred EecccHHHHH------hhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcc
Confidence 0 11111 223458999999988877665555544421 10 124567776664
Q ss_pred cchHHHhcCccEEEeCCCChhHHHHHHHH
Q 001748 452 KLPRSALSRSQKYHFPKIKDGDIASRLRR 480 (1018)
Q Consensus 452 kL~~tI~SRcq~I~F~~ls~eEI~~~L~~ 480 (1018)
.+++.+..|+.++....++.+++..++..
T Consensus 1673 gLPkSF~nRFsvV~~d~lt~dDi~~Ia~~ 1701 (4600)
T COG5271 1673 GLPKSFLNRFSVVKMDGLTTDDITHIANK 1701 (4600)
T ss_pred cCCHHHhhhhheEEecccccchHHHHHHh
Confidence 58999999999999999999999887654
No 292
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.17 E-value=0.00065 Score=73.35 Aligned_cols=85 Identities=20% Similarity=0.316 Sum_probs=46.7
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccC-CCCcccccccccccchhHHHHHHHHhcCC
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSG-RSRDVKEVDSVRINRSDRVGSLMKSAFLP 405 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG-~~~DvieIdaas~~~vd~IReLie~a~~~ 405 (1018)
+.+..+||||+||+|||++|+.++.......... . .. ...| ...++..++.. ...+.+.+.+..+..
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~-------~-~~-~l~g~~~~~v~~~d~~--~~~~~~~d~l~~~~~- 77 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDM-------S-SK-VLIGDENVDIADHDDM--PPIQAMVEFYVMQNI- 77 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCCCEEEeccc-------c-ch-hccCCCCCceeecCCC--CCHHHHHHHHHHHHh-
Confidence 4567799999999999999999874221111100 0 00 1111 12233333221 123344444443322
Q ss_pred CCCCCceEEEEeCccccCH
Q 001748 406 PFSSRFKIFIIDECQLLHG 424 (1018)
Q Consensus 406 P~~g~~kVLIIDEaD~Ls~ 424 (1018)
....+++||||.++.|..
T Consensus 78 -~~~~ydtVVIDsI~~l~~ 95 (220)
T TIGR01618 78 -QAVKYDNIVIDNISALQN 95 (220)
T ss_pred -ccccCCEEEEecHHHHHH
Confidence 246789999999987754
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.14 E-value=0.0033 Score=81.17 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=102.1
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc---cccchhHHH--HHHHHhcCC
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV---RINRSDRVG--SLMKSAFLP 405 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa---s~~~vd~IR--eLie~a~~~ 405 (1018)
.+|+.||..+|||+++..+|+..+ +..+.+.+..|.|..+.-+. ..+|.-.++ -+++.++
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tg-------------hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-- 954 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETG-------------HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-- 954 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhC-------------ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh--
Confidence 389999999999999999999874 34567777778776653211 111111111 1333332
Q ss_pred CCCCCceEEEEeCccccCHHHHHHHHHHHhcc-------------CCcEEEEEEecCCC-------cchHHHhcCccEEE
Q 001748 406 PFSSRFKIFIIDECQLLHGETWATVLNSLENI-------------SQHVVFVMITPELD-------KLPRSALSRSQKYH 465 (1018)
Q Consensus 406 P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-------------p~~vifILaTn~~~-------kL~~tI~SRcq~I~ 465 (1018)
+.--||+||......++.++|-+.|++. |..-..+++|.+|+ .+-.+++.|+..++
T Consensus 955 ----~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~h 1030 (4600)
T COG5271 955 ----RGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMH 1030 (4600)
T ss_pred ----cCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhh
Confidence 2347999999988888888888888752 22234677887765 35678999999999
Q ss_pred eCCCChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHcC
Q 001748 466 FPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSN 502 (1018)
Q Consensus 466 F~~ls~eEI~~~L~~iakkegI~Id~eAL~~LA~~s~ 502 (1018)
|..++++|+..+|...| +|.+.-+..|++...
T Consensus 1031 FddipedEle~ILh~rc-----~iapSyakKiVeVyr 1062 (4600)
T COG5271 1031 FDDIPEDELEEILHGRC-----EIAPSYAKKIVEVYR 1062 (4600)
T ss_pred cccCcHHHHHHHHhccC-----ccCHHHHHHHHHHHH
Confidence 99999999999997655 455555555554443
No 294
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.10 E-value=0.0012 Score=62.95 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.7
Q ss_pred EEEECCCchHHHHHHHHHHHHHhc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
+.|+||+|+|||++|+.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999863
No 295
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.07 E-value=0.015 Score=70.11 Aligned_cols=150 Identities=13% Similarity=0.201 Sum_probs=87.5
Q ss_pred CcccccCcHHHHHHHHHHHHcC-----------CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCcccccee
Q 001748 305 FFDELVGQNVVVRSLLSAISRG-----------MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373 (1018)
Q Consensus 305 tFddLVGqe~iv~~L~~aIk~g-----------rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i 373 (1018)
-|-.+.|++.++.-+.-++-.| +.--++++.|.|||||+.+.++.+..+- .. .|
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP----R~-----------vY 407 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP----RS-----------VY 407 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC----cc-----------eE
Confidence 4666789999998777766543 1123599999999999999998876441 11 12
Q ss_pred ccCCCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-------------CCc
Q 001748 374 SSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-------------SQH 440 (1018)
Q Consensus 374 ~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-------------p~~ 440 (1018)
.+|....-.-+.++-....+...-.++. -+-+.++..|--|||+|.|....+.+|+..||.- +.+
T Consensus 408 tsGkaSSaAGLTaaVvkD~esgdf~iEA--GALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnAR 485 (764)
T KOG0480|consen 408 TSGKASSAAGLTAAVVKDEESGDFTIEA--GALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNAR 485 (764)
T ss_pred ecCcccccccceEEEEecCCCCceeeec--CcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecch
Confidence 2232221111111100000000001111 1123456789999999999998899999999963 233
Q ss_pred EEEEEEecCCC-------------cchHHHhcCccE--EEeCCCCh
Q 001748 441 VVFVMITPELD-------------KLPRSALSRSQK--YHFPKIKD 471 (1018)
Q Consensus 441 vifILaTn~~~-------------kL~~tI~SRcq~--I~F~~ls~ 471 (1018)
+-+|.++|-.. ++.++|.|||.. +-+..+++
T Consensus 486 tSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE 531 (764)
T KOG0480|consen 486 TSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNE 531 (764)
T ss_pred hhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCch
Confidence 34444554321 567889999984 33444443
No 296
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.04 E-value=0.0014 Score=75.76 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 312 qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
|..+...+.+++.. .-+..+++.||.|||||++.++|...+.
T Consensus 6 Q~~~~~~v~~~~~~-~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 6 QRRVFDTVIEAIEN-EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHc-cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 66777777777765 4457789999999999999999988874
No 297
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.01 E-value=0.019 Score=67.72 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=62.5
Q ss_pred ccCcHHHHHHHHHHHHcC---CCC--------cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC
Q 001748 309 LVGQNVVVRSLLSAISRG---MVT--------SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR 377 (1018)
Q Consensus 309 LVGqe~iv~~L~~aIk~g---rl~--------~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~ 377 (1018)
+.|++++++.+.-.+-.| .+| =.+||.|.|||-|+.+.+-+-+-. ..-.|.+|.
T Consensus 333 IfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs---------------PIaVYTSGK 397 (729)
T KOG0481|consen 333 IFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS---------------PIAVYTSGK 397 (729)
T ss_pred hcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC---------------ceEEEecCC
Confidence 568899998888777654 222 248999999999999998765422 112233333
Q ss_pred CCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhc
Q 001748 378 SRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLEN 436 (1018)
Q Consensus 378 ~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEe 436 (1018)
...-.-+.++-... ..-|+++-+- -+-..++..|+-|||+|.|..+..-++-..||.
T Consensus 398 GSSAAGLTASV~RD-~~tReFylEG-GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQ 454 (729)
T KOG0481|consen 398 GSSAAGLTASVIRD-PSTREFYLEG-GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQ 454 (729)
T ss_pred CcccccceeeEEec-CCcceEEEec-ceEEEecCCEEEeehhhccCchhhhHHHHHHHh
Confidence 22111111110000 0001110000 011234567999999999998877777777764
No 298
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.98 E-value=0.029 Score=67.63 Aligned_cols=138 Identities=15% Similarity=0.199 Sum_probs=76.4
Q ss_pred ccCcHHHHHHHHHHHHcCCCC-----------cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC
Q 001748 309 LVGQNVVVRSLLSAISRGMVT-----------SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR 377 (1018)
Q Consensus 309 LVGqe~iv~~L~~aIk~grl~-----------~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~ 377 (1018)
+.|+..++..+.-++-.|... -++||+|.|||||+.+.+.+++..... .+..|.
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RA---------------V~tTGq 515 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRA---------------VFTTGQ 515 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcce---------------eEeccC
Confidence 558888888888887655221 249999999999999999988754311 111121
Q ss_pred CCcccccccccc-cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhc-------------cCCcEEE
Q 001748 378 SRDVKEVDSVRI-NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLEN-------------ISQHVVF 443 (1018)
Q Consensus 378 ~~DvieIdaas~-~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEe-------------pp~~vif 443 (1018)
...-.-+.+.-. ..+ .++..-++ -+-..+.+.|-+|||+|.|+..-...+-..||. ....+.+
T Consensus 516 GASavGLTa~v~KdPv--trEWTLEa-GALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctv 592 (854)
T KOG0477|consen 516 GASAVGLTAYVRKDPV--TREWTLEA-GALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTV 592 (854)
T ss_pred CccccceeEEEeeCCc--cceeeecc-CeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhh
Confidence 111111111000 000 00110000 111235677999999999987543333333332 2234556
Q ss_pred EEEecCC-----------C--cchHHHhcCccEE
Q 001748 444 VMITPEL-----------D--KLPRSALSRSQKY 464 (1018)
Q Consensus 444 ILaTn~~-----------~--kL~~tI~SRcq~I 464 (1018)
|.+++-. + .+.+.|+|||.++
T Consensus 593 IAAanPigGRY~~s~tFaqNV~ltePIlSRFDiL 626 (854)
T KOG0477|consen 593 IAAANPIGGRYNPSLTFAQNVDLTEPILSRFDIL 626 (854)
T ss_pred heecCCCCCccCCccchhhccccccchhhhccee
Confidence 6666531 1 5678899998854
No 299
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.98 E-value=0.00084 Score=77.05 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.5
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
+.+++.|.||||||.+|-.+++.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 300
>PRK13695 putative NTPase; Provisional
Probab=96.84 E-value=0.0078 Score=61.97 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=45.2
Q ss_pred CceEEEEeCcccc---CHHHHHHHHHHHhccCCcEEEEEEecCC--CcchHHHhcCc--cEEEeCCCChhHHHHHHHHHH
Q 001748 410 RFKIFIIDECQLL---HGETWATVLNSLENISQHVVFVMITPEL--DKLPRSALSRS--QKYHFPKIKDGDIASRLRRIC 482 (1018)
Q Consensus 410 ~~kVLIIDEaD~L---s~~a~naLLk~LEepp~~vifILaTn~~--~kL~~tI~SRc--q~I~F~~ls~eEI~~~L~~ia 482 (1018)
+..+++|||+..+ .....+.|.+.++. ...+|++++.. ..+.+.|.++- ..+++.+-+.+++...+.++.
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 5679999996543 33445666666643 23466666653 24567777764 478888888887777665543
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.83 E-value=0.081 Score=66.17 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=64.3
Q ss_pred ceEEEEeCccccCHHHH-HHHHHHHhccCCcEEEEEEecCCCcch-HHHhcCccEEEe----CCCChhHHHHHHHHHHHH
Q 001748 411 FKIFIIDECQLLHGETW-ATVLNSLENISQHVVFVMITPELDKLP-RSALSRSQKYHF----PKIKDGDIASRLRRICVE 484 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~~a~-naLLk~LEepp~~vifILaTn~~~kL~-~tI~SRcq~I~F----~~ls~eEI~~~L~~iakk 484 (1018)
+-.+|||+.|.++..+. ..|-.+++..|+++.+|++|.....+. ..++=|-+.+++ -.++.+|..+++...
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~--- 206 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR--- 206 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc---
Confidence 35899999999987654 456667788889999999998765432 233333332222 144567777776542
Q ss_pred hcCCCCHHHHHHHHHHcCCCHH
Q 001748 485 EAINFDQAALDFIAAKSNGSIR 506 (1018)
Q Consensus 485 egI~Id~eAL~~LA~~s~GnLR 506 (1018)
-+..++...+..|...++|-+-
T Consensus 207 ~~l~Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 207 GSLPLDAADLKALYDRTEGWAA 228 (894)
T ss_pred CCCCCChHHHHHHHhhcccHHH
Confidence 2588999999999999998553
No 302
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.83 E-value=0.047 Score=64.56 Aligned_cols=121 Identities=16% Similarity=0.233 Sum_probs=68.6
Q ss_pred cccccCCCCcccccCcHHHHHHHHHHHHcCC-----------CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCC
Q 001748 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGM-----------VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCG 365 (1018)
Q Consensus 297 L~eKyRP~tFddLVGqe~iv~~L~~aIk~gr-----------l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg 365 (1018)
+++|..-..--+|.|++++++.|.-.+-.|- ..=.++|.|.||+-|+.|.+.+.+..- .
T Consensus 332 ~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlap----R------ 401 (721)
T KOG0482|consen 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAP----R------ 401 (721)
T ss_pred HHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCc----c------
Confidence 3444333333468899999999988876431 112489999999999999998876432 1
Q ss_pred CccccceeccCCCCcccccccccccchhHHH-HH-HHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhc
Q 001748 366 LCRECALFSSGRSRDVKEVDSVRINRSDRVG-SL-MKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLEN 436 (1018)
Q Consensus 366 ~C~sc~~i~sG~~~DvieIdaas~~~vd~IR-eL-ie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEe 436 (1018)
-.+..|....-.-+.++-.. +.+- ++ ++. -+-..+...|--|||+|.|......++-..||.
T Consensus 402 -----gvYTTGrGSSGVGLTAAVmk--DpvTgEM~LEG--GALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQ 465 (721)
T KOG0482|consen 402 -----GVYTTGRGSSGVGLTAAVMK--DPVTGEMVLEG--GALVLADGGICCIDEFDKMDESDRTAIHEVMEQ 465 (721)
T ss_pred -----cceecCCCCCccccchhhhc--CCCCCeeEecc--ceEEEccCceEeehhhhhhhhhhhHHHHHHHHh
Confidence 11222322211111111100 0000 00 000 001123566889999999998877778777775
No 303
>PRK10536 hypothetical protein; Provisional
Probab=96.81 E-value=0.0064 Score=67.14 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=34.8
Q ss_pred ccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHH
Q 001748 307 DELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 307 ddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..+.+.+.....+..++..+ ..+++.||.|||||++|.++|...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34556667777777777764 478999999999999999999853
No 304
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.79 E-value=0.0033 Score=61.98 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=21.2
Q ss_pred EEEECCCchHHHHHHHHHHHHHh
Q 001748 332 YLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
++|+||+|+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
No 305
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0084 Score=70.01 Aligned_cols=139 Identities=12% Similarity=0.163 Sum_probs=67.4
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhccCC-CCCCCCCCccccceeccCCC----CcccccccccccchhHHHHHHHHhc
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCLSL-EDQKPCGLCRECALFSSGRS----RDVKEVDSVRINRSDRVGSLMKSAF 403 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~~~-~~~~PCg~C~sc~~i~sG~~----~DvieIdaas~~~vd~IReLie~a~ 403 (1018)
+..++|+||.|+||||++..+|..+.-... .....+-..-.|+....... -+...+.-......+.+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 467999999999999999999987642110 00000000000100000000 000000000001112333333322
Q ss_pred CCCCCCCceEEEEeCccccCHH--HHHHHHHHHhcc--CCcEEEEEEecCCCcchHHHhcCc-----cEEEeCCCChhH
Q 001748 404 LPPFSSRFKIFIIDECQLLHGE--TWATVLNSLENI--SQHVVFVMITPELDKLPRSALSRS-----QKYHFPKIKDGD 473 (1018)
Q Consensus 404 ~~P~~g~~kVLIIDEaD~Ls~~--a~naLLk~LEep--p~~vifILaTn~~~kL~~tI~SRc-----q~I~F~~ls~eE 473 (1018)
.++.+||||++..+..+ ....+.++++.. +..+++|+.++.-..-...+..++ ..+-|-+++...
T Consensus 253 -----~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 253 -----KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETT 326 (388)
T ss_pred -----CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCC
Confidence 35789999999988644 234566666643 335777777655432223333333 245566665543
No 306
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.74 E-value=0.058 Score=63.34 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=67.1
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHhc----c--CCcEEEEEEecCCC---cchHHHhcC-ccEEEeCCCChhHHHHHHHH
Q 001748 411 FKIFIIDECQLLHGETWATVLNSLEN----I--SQHVVFVMITPELD---KLPRSALSR-SQKYHFPKIKDGDIASRLRR 480 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~~a~naLLk~LEe----p--p~~vifILaTn~~~---kL~~tI~SR-cq~I~F~~ls~eEI~~~L~~ 480 (1018)
+-||+||.+..-... .+.+.+.|-+ . ..-..+||.|++.. .|-+++-+| +..+.+...+.+....++..
T Consensus 149 ~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 569999998654433 2222222211 0 12234666676653 344555555 45788999999888888877
Q ss_pred HHHHhc-C-------------------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 001748 481 ICVEEA-I-------------------NFDQAALDFIAAKSNGSIRDAEMLLDQLSL 517 (1018)
Q Consensus 481 iakkeg-I-------------------~Id~eAL~~LA~~s~GnLR~Al~lLeqLsl 517 (1018)
.+.... . ......++......||-+.++.-+..++..
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 775531 1 134556777888889999999888888754
No 307
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.72 E-value=0.0072 Score=69.25 Aligned_cols=49 Identities=27% Similarity=0.508 Sum_probs=40.1
Q ss_pred Ccc-cccCcHHHHHHHHHHHHc-----CCCCcEEEEECCCchHHHHHHHHHHHHH
Q 001748 305 FFD-ELVGQNVVVRSLLSAISR-----GMVTSFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 305 tFd-dLVGqe~iv~~L~~aIk~-----grl~~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
.|+ ++.|.++.+..|-+.++. +.-...++|.||.|+|||++++.|.+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 566 899999888888776653 3334789999999999999999998876
No 308
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.71 E-value=0.0038 Score=66.25 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=65.9
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCC---
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP--- 405 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~--- 405 (1018)
|+.++|.||.|+||||++-.+|..+... +...-++-.|..+....++++...+.+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-------------------~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-------------------GKKVALISADTYRIGAVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-------------------T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-------------------cccceeecCCCCCccHHHHHHHHHHHhccccch
Confidence 5679999999999999999999887533 111112222222222222222222222100
Q ss_pred -----------------CCCCCceEEEEeCccccCHH--HHHHHHHHHhcc-CCcEEEEEEecCCCcchHHHhcC-----
Q 001748 406 -----------------PFSSRFKIFIIDECQLLHGE--TWATVLNSLENI-SQHVVFVMITPELDKLPRSALSR----- 460 (1018)
Q Consensus 406 -----------------P~~g~~kVLIIDEaD~Ls~~--a~naLLk~LEep-p~~vifILaTn~~~kL~~tI~SR----- 460 (1018)
....+..+|+||-+.+...+ ....|.++++.. +..+.+|+.++....-...+..+
T Consensus 62 ~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~ 141 (196)
T PF00448_consen 62 ARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG 141 (196)
T ss_dssp SSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS
T ss_pred hhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc
Confidence 00123569999998766533 345555555543 55777888776554333333322
Q ss_pred ccEEEeCCCChh
Q 001748 461 SQKYHFPKIKDG 472 (1018)
Q Consensus 461 cq~I~F~~ls~e 472 (1018)
...+-|-++++.
T Consensus 142 ~~~lIlTKlDet 153 (196)
T PF00448_consen 142 IDGLILTKLDET 153 (196)
T ss_dssp TCEEEEESTTSS
T ss_pred CceEEEEeecCC
Confidence 234556666653
No 309
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.70 E-value=0.0026 Score=73.55 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=68.9
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcc--ccc----ccccccchhHHHHHHH
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDV--KEV----DSVRINRSDRVGSLMK 400 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dv--ieI----daas~~~vd~IReLie 400 (1018)
..+.+++|||+.|+|||.+.-.|...+...... -.|+.- .++ .... ...+.+..+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~----------------R~HFh~Fm~~vh~~l~~~~-~~~~~l~~va~ 122 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR----------------RVHFHEFMLDVHSRLHQLR-GQDDPLPQVAD 122 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccc----------------cccccHHHHHHHHHHHHHh-CCCccHHHHHH
Confidence 356789999999999999999998887432110 012111 111 1111 11233444444
Q ss_pred HhcCCCCCCCceEEEEeCccccCHHH---HHHHHHHHhccCCcEEEEEEecCCC-----------cc---hHHHhcCccE
Q 001748 401 SAFLPPFSSRFKIFIIDECQLLHGET---WATVLNSLENISQHVVFVMITPELD-----------KL---PRSALSRSQK 463 (1018)
Q Consensus 401 ~a~~~P~~g~~kVLIIDEaD~Ls~~a---~naLLk~LEepp~~vifILaTn~~~-----------kL---~~tI~SRcq~ 463 (1018)
.+ ..+.+||.+||++--.... ...|+..|=+ ..+++|.|+|.++ .+ ...|.++|.+
T Consensus 123 ~l-----~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~--~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~v 195 (362)
T PF03969_consen 123 EL-----AKESRLLCFDEFQVTDIADAMILKRLFEALFK--RGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDV 195 (362)
T ss_pred HH-----HhcCCEEEEeeeeccchhHHHHHHHHHHHHHH--CCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEE
Confidence 44 2345699999997654332 3344444433 4666666666543 12 2457789999
Q ss_pred EEeCCC
Q 001748 464 YHFPKI 469 (1018)
Q Consensus 464 I~F~~l 469 (1018)
+.+...
T Consensus 196 v~ld~~ 201 (362)
T PF03969_consen 196 VELDGG 201 (362)
T ss_pred EEecCC
Confidence 988665
No 310
>PHA02624 large T antigen; Provisional
Probab=96.69 E-value=0.0046 Score=74.96 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=23.9
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.+.+||+||+|||||+++.+|++.++
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999999984
No 311
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.68 E-value=0.0064 Score=76.58 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=56.7
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhc-CCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFS 408 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~ 408 (1018)
...+|.|++|||||++++++...+...... +....-.......+..........+..++.... .....
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~-----------V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~ 437 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYR-----------VIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLL 437 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCe-----------EEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccC
Confidence 468999999999999999998766421100 001100000001111100001112333322111 11223
Q ss_pred CCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEe
Q 001748 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447 (1018)
Q Consensus 409 g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaT 447 (1018)
....||||||+.|+.......|++...... ..+||+.
T Consensus 438 ~~~~llIvDEasMv~~~~~~~Ll~~~~~~~--~kliLVG 474 (744)
T TIGR02768 438 SDKDVLVIDEAGMVGSRQMARVLKEAEEAG--AKVVLVG 474 (744)
T ss_pred CCCcEEEEECcccCCHHHHHHHHHHHHhcC--CEEEEEC
Confidence 467899999999999988888888776543 4455554
No 312
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=96.66 E-value=0.0012 Score=75.48 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=70.5
Q ss_pred cccCcHHHHHHHHHHHHcCC-----------CCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccC
Q 001748 308 ELVGQNVVVRSLLSAISRGM-----------VTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSG 376 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aIk~gr-----------l~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG 376 (1018)
.+.|++.++..+.-++-.|. -.-++||.|.||+||+.+.+.+++..- . ..+.+|
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p----r-----------~v~~~g 89 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP----R-----------SVYTSG 89 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S----S-----------EEEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCC----c-----------eEEECC
Confidence 46688888776665443321 112699999999999999986643321 1 112223
Q ss_pred CCCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-------------CCcEEE
Q 001748 377 RSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-------------SQHVVF 443 (1018)
Q Consensus 377 ~~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-------------p~~vif 443 (1018)
.+.....+.+.-......-.-.++. -.-..+...|+.|||++.+..+...+|+..||.- +..+-+
T Consensus 90 ~~~s~~gLta~~~~d~~~~~~~lea--Galvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 90 KGSSAAGLTASVSRDPVTGEWVLEA--GALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp CGSTCCCCCEEECCCGGTSSECEEE---HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred CCcccCCccceeccccccceeEEeC--CchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 2222222211110000000000000 0001245679999999999999999999999962 334455
Q ss_pred EEEecCCC-------------cchHHHhcCccEE
Q 001748 444 VMITPELD-------------KLPRSALSRSQKY 464 (1018)
Q Consensus 444 ILaTn~~~-------------kL~~tI~SRcq~I 464 (1018)
+.++|-.. .++++|+|||..+
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 55554321 4678899999954
No 313
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.65 E-value=0.004 Score=78.12 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=56.9
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCC----
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP---- 405 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~---- 405 (1018)
+..++.|++|||||++++++.+.+...... .........|.. ...+..........+..++......
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~-------~~v~l~ApTg~A--A~~L~e~~g~~a~Tih~lL~~~~~~~~~~ 409 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGL-------LPVGLAAPTGRA--AKRLGEVTGLTASTIHRLLGYGPDTFRHN 409 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCC-------ceEEEEeCchHH--HHHHHHhcCCccccHHHHhhccCCccchh
Confidence 468999999999999999998877532100 000000011111 0111111001112233333321100
Q ss_pred --CCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEe
Q 001748 406 --PFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447 (1018)
Q Consensus 406 --P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaT 447 (1018)
.......+|||||+.|+....+..|++.+. ....+|++.
T Consensus 410 ~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvG 450 (720)
T TIGR01448 410 HLEDPIDCDLLIVDESSMMDTWLALSLLAALP---DHARLLLVG 450 (720)
T ss_pred hhhccccCCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEEC
Confidence 001245799999999999988888887653 445666665
No 314
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0076 Score=76.07 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=111.0
Q ss_pred CcccccCc-HHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccc
Q 001748 305 FFDELVGQ-NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKE 383 (1018)
Q Consensus 305 tFddLVGq-e~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dvie 383 (1018)
.++-++|. ++.++.+.+.+...+- +.-+|.|++|+|||.++.-+|+.+..-..... ..-..+..+.-|. .
T Consensus 184 kldPvigr~deeirRvi~iL~Rrtk-~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~---l~~~~l~~l~~g~-----l 254 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILSRKTK-NNPVLVGEPGVGKTAIVEGLAQRIATGDVPET---LKDKKLIALDFGS-----L 254 (898)
T ss_pred CCCCccCCchHHHHHHHHHHhccCC-CCceEEecCCCCchhHHHHHHHHhhcCCCCcc---ccccceEEEEhhh-----c
Confidence 35678887 7777777776665554 55589999999999999999998753221110 0000111111110 1
Q ss_pred cccccc--cchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH--------HHHHHHHHHhccCCcEEEEEEecCCC--
Q 001748 384 VDSVRI--NRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE--------TWATVLNSLENISQHVVFVMITPELD-- 451 (1018)
Q Consensus 384 Idaas~--~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~--------a~naLLk~LEepp~~vifILaTn~~~-- 451 (1018)
+..+.. ...+.++++...+.. .+..-|++|||+|.+... +.| +|+.+.... .+.+|.+|+...
T Consensus 255 ~aGa~~rge~E~rlk~l~k~v~~---~~~gvILfigelh~lvg~g~~~~~~d~~n-lLkp~L~rg-~l~~IGatT~e~Y~ 329 (898)
T KOG1051|consen 255 VAGAKRRGEFEERLKELLKEVES---GGGGVILFLGELHWLVGSGSNYGAIDAAN-LLKPLLARG-GLWCIGATTLETYR 329 (898)
T ss_pred ccCcccchHHHHHHHHHHHHHhc---CCCcEEEEecceeeeecCCCcchHHHHHH-hhHHHHhcC-CeEEEecccHHHHH
Confidence 111111 122456666666543 456789999999998643 233 444444433 388999887432
Q ss_pred ---cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH----hcCCCCHHHHHHHHHH
Q 001748 452 ---KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE----EAINFDQAALDFIAAK 500 (1018)
Q Consensus 452 ---kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk----egI~Id~eAL~~LA~~ 500 (1018)
.-.|++.+|++.+.+.-++.++...+|.....+ .|..+.++++...+..
T Consensus 330 k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~ 385 (898)
T KOG1051|consen 330 KCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQL 385 (898)
T ss_pred HHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccch
Confidence 346899999999999999988766666555444 4556666665444433
No 315
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.49 E-value=0.012 Score=75.62 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=56.7
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhc-CCCCCC
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSS 409 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-~~P~~g 409 (1018)
.+++.|++|||||++.+++...+..... .+....-+..-...+..........|..++.... ......
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~-----------~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~ 432 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGY-----------EVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLT 432 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCC-----------eEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccc
Confidence 5789999999999999887766532110 0111111111111111111111123444432211 111233
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEe
Q 001748 410 RFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447 (1018)
Q Consensus 410 ~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaT 447 (1018)
...||||||+.|+....+..|++..+.... .+||+.
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~~ga--rvVLVG 468 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAADAGA--KVVLVG 468 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhhCCC--EEEEEC
Confidence 567999999999999988889888776544 444443
No 316
>PTZ00202 tuzin; Provisional
Probab=96.49 E-value=0.059 Score=63.59 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcC--CCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 303 PNFFDELVGQNVVVRSLLSAISRG--MVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 303 P~tFddLVGqe~iv~~L~~aIk~g--rl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
|....+++|.+.....|...+... ..+...+|.||+|+|||++++.++..+.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445678999999999999998643 3446789999999999999999987664
No 317
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.48 E-value=0.053 Score=61.58 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=39.0
Q ss_pred EEEeCCCChhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHcCCCHHHHHH
Q 001748 463 KYHFPKIKDGDIASRLRRICVEEAI---NFDQAALDFIAAKSNGSIRDAEM 510 (1018)
Q Consensus 463 ~I~F~~ls~eEI~~~L~~iakkegI---~Id~eAL~~LA~~s~GnLR~Al~ 510 (1018)
.+.+++++.+|+...++......-+ ..++...+.+...++||++.+..
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999988766433 35677788888888999998753
No 318
>PRK14974 cell division protein FtsY; Provisional
Probab=96.48 E-value=0.018 Score=66.06 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=23.5
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.||+|+||||++..+|..+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998775
No 319
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=96.42 E-value=0.05 Score=49.97 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=69.9
Q ss_pred CChhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhhhcCCHHHHHH
Q 001748 534 VSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSR 613 (1018)
Q Consensus 534 v~ee~If~Lldail~~d~~~al~~l~eLl~~G~dpl~LL~~L~~~LRdLL~~K~~~~~~~i~~~~l~r~a~~~s~~~L~~ 613 (1018)
++++.+-++++.+.+++...+...+.+++..|.++..|+..|...+... .++.....+
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~----------------------~~~~~~k~~ 60 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVES----------------------DIPDSQKAE 60 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTS----------------------TSSHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh----------------------hccHHHHHH
Confidence 5677888999999999999999999999999999999998887775421 334445678
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q 001748 614 ALKILSETEKQLRMSKHQTTWLTVALLQL 642 (1018)
Q Consensus 614 aL~iLseae~qLK~s~n~rl~LE~lLlkL 642 (1018)
++..++++|.++..|.++.+.|+.++.++
T Consensus 61 i~~~la~~e~rl~~G~~e~lQl~alva~~ 89 (89)
T PF08542_consen 61 ILKILAEIEYRLSDGASEILQLEALVAAF 89 (89)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHCCCCHHHHHHHHHhhC
Confidence 88999999999999999999999998763
No 320
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.42 E-value=0.021 Score=69.38 Aligned_cols=51 Identities=18% Similarity=0.453 Sum_probs=36.3
Q ss_pred HHHHhcCCCCCCCceEEEEeCccc--cCHHHHHHHHHHHhccCCcEEEEEEec
Q 001748 398 LMKSAFLPPFSSRFKIFIIDECQL--LHGETWATVLNSLENISQHVVFVMITP 448 (1018)
Q Consensus 398 Lie~a~~~P~~g~~kVLIIDEaD~--Ls~~a~naLLk~LEepp~~vifILaTn 448 (1018)
++.++...|...+|.||||||||. +..+..-.|||-+-.......+|+.+.
T Consensus 151 LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSA 203 (674)
T KOG0922|consen 151 LLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSA 203 (674)
T ss_pred HHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 556666778889999999999994 667777777766655555555555543
No 321
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=96.37 E-value=0.012 Score=59.36 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 311 GQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 311 Gqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.|.+++..+.+.+....-...+||.+|.|+|||.++-.++..+.
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 47888888888888763346789999999999999998777664
No 322
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.016 Score=67.36 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.6
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHH
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
...++|.||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999875
No 323
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.017 Score=67.46 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.3
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.||.|+||||++..||..+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 35789999999999999999998874
No 324
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.014 Score=59.49 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=24.4
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..+.+|++|.|||||||++..+|...+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 3446789999999999999999998775
No 325
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.28 E-value=0.026 Score=60.13 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=68.4
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCCCCC
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS 408 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~~ 408 (1018)
..+++|.|+-|+|||++.+.|+...... . +. .....+....+....
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~~~~d--------------------~------~~--~~~~kd~~~~l~~~~------ 97 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPEYFSD--------------------S------IN--DFDDKDFLEQLQGKW------ 97 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHHhccC--------------------c------cc--cCCCcHHHHHHHHhH------
Confidence 4579999999999999999996553211 0 00 001123444444443
Q ss_pred CCceEEEEeCccccCHHHHHHHHHHHh---------------ccCCcEEEEEEecCCCcc-hHHHhcCccEEEeCC
Q 001748 409 SRFKIFIIDECQLLHGETWATVLNSLE---------------NISQHVVFVMITPELDKL-PRSALSRSQKYHFPK 468 (1018)
Q Consensus 409 g~~kVLIIDEaD~Ls~~a~naLLk~LE---------------epp~~vifILaTn~~~kL-~~tI~SRcq~I~F~~ 468 (1018)
++.|||++.+.....++|-.++- +.+...+||.+||+.+-| +++=-+|+-.+.+..
T Consensus 98 ----iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 98 ----IVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred ----heeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 89999999999777777776663 234567888888886633 345567888888876
No 326
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.26 E-value=0.018 Score=59.43 Aligned_cols=121 Identities=15% Similarity=0.143 Sum_probs=68.2
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC-------------CCccccccc-------cccc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR-------------SRDVKEVDS-------VRIN 390 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~-------------~~DvieIda-------as~~ 390 (1018)
.+.+|+++|.|||++|-.+|-..-..... -....++.|. ..++..... ....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~--------v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYR--------VGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe--------EEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHH
Confidence 56788888999999999888765322111 0111222221 011110000 0001
Q ss_pred chhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH---HHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCcc
Q 001748 391 RSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE---TWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462 (1018)
Q Consensus 391 ~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~---a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq 462 (1018)
.....++..+.+...-..+.+.+||+||+-....- ..+.++.+|+..|..+-+|++..+. ++.|..++.
T Consensus 76 ~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~---p~~l~e~AD 147 (159)
T cd00561 76 DIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA---PKELIEAAD 147 (159)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCc
Confidence 11223333333332223567899999998654221 3567889999999999999999875 455555554
No 327
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.21 E-value=0.0037 Score=61.36 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=21.8
Q ss_pred EEEEECCCchHHHHHHHHHHHHHh
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.+++.||||+||||+|+.+++.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 379999999999999999998875
No 328
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.20 E-value=0.034 Score=57.23 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.8
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
++|.||||+||||+|+.||+.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 7899999999999999999998753
No 329
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.17 E-value=0.01 Score=62.93 Aligned_cols=128 Identities=14% Similarity=0.090 Sum_probs=70.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCC--------CCCCCCCc------cccceeccCCCCcccccccccccchhHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLE--------DQKPCGLC------RECALFSSGRSRDVKEVDSVRINRSDRV 395 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~--------~~~PCg~C------~sc~~i~sG~~~DvieIdaas~~~vd~I 395 (1018)
..+++||++|.|||++|-.+|-........ .....|+- +.......|..+.+.. .........+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~--~~~~e~~~~~ 100 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET--QDRERDIAAA 100 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC--CCcHHHHHHH
Confidence 568999999999999999888765332211 00000110 0011111111111110 0000112234
Q ss_pred HHHHHHhcCCCCCCCceEEEEeCccccCHH---HHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCcc
Q 001748 396 GSLMKSAFLPPFSSRFKIFIIDECQLLHGE---TWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462 (1018)
Q Consensus 396 ReLie~a~~~P~~g~~kVLIIDEaD~Ls~~---a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq 462 (1018)
++.++.+...-..+.+.+||+||+-....- ....++.+|+..|..+-+|++..+. ++.|...+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~---p~~Lie~AD 167 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA---PRELIEAAD 167 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCc
Confidence 444444443334577899999998543321 2456888899999999999998876 455555544
No 330
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.14 E-value=0.016 Score=75.08 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=57.0
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHh-cCCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSA-FLPPFS 408 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a-~~~P~~ 408 (1018)
...++.|++|||||++.+.+...+...... +....-...-...+..........|..++-.. ......
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~-----------V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l 466 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYR-----------VVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQL 466 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCe-----------EEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCC
Confidence 468999999999999999998866421100 00000000001111111011111233322111 111112
Q ss_pred CCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEE
Q 001748 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVM 445 (1018)
Q Consensus 409 g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifIL 445 (1018)
....||||||+.|+.......|++.++.....+++|.
T Consensus 467 ~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLVG 503 (1102)
T PRK13826 467 DNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVG 503 (1102)
T ss_pred CCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEEC
Confidence 3467999999999999999999999876544444443
No 331
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.14 E-value=0.02 Score=70.33 Aligned_cols=36 Identities=14% Similarity=0.395 Sum_probs=27.6
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEec
Q 001748 410 RFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITP 448 (1018)
Q Consensus 410 ~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn 448 (1018)
...||||||+-|+.......|++.+ +..+.+|++..
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD 294 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGD 294 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECC
Confidence 3579999999999988877777766 34566777654
No 332
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.13 E-value=0.043 Score=64.97 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..++|.||.|+||||++..||..+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999988764
No 333
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.11 E-value=0.028 Score=62.92 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=103.0
Q ss_pred CcccccCcHH---HHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcc
Q 001748 305 FFDELVGQNV---VVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDV 381 (1018)
Q Consensus 305 tFddLVGqe~---iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dv 381 (1018)
.-.++++-.. ++..+.-+-+.|. ...+||-+|.|||..++-++..-.........||+....-. ..
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~---l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i--------~~ 138 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS---LVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLI--------LI 138 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc---eEEEeccccchhHHHHHhhcccCccceeecCChhhHHHHHH--------HH
Confidence 4566776444 3455555555555 57899999999999999988754322222223332111100 00
Q ss_pred cccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecCC------CcchH
Q 001748 382 KEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL------DKLPR 455 (1018)
Q Consensus 382 ieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~~------~kL~~ 455 (1018)
++.+.. ......+.+.+......- ....+.|++||++.|...+++.|.+..++.+-.+++|...... +....
T Consensus 139 i~~~~~-~~~~~~~~d~~~~~~~~l-~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~prL~~~l~~~~~~~~ 216 (297)
T COG2842 139 ICAAAF-GATDGTINDLTERLMIRL-RDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPRLFKVLRRPEDELS 216 (297)
T ss_pred HHHHHh-cccchhHHHHHHHHHHHH-ccCcceeeeehhhccChHHHHHHHHHHHhhCceEEEecChHHHhccccchHHHH
Confidence 000100 001112222222211111 5567899999999999999999999998866555444433211 11112
Q ss_pred HHhcCccEEEeCCCCh------hHHHHHHHHHHHHhcCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 001748 456 SALSRSQKYHFPKIKD------GDIASRLRRICVEEAIN-FDQAALDFIAAKSNGSIRDAEMLLDQLSL 517 (1018)
Q Consensus 456 tI~SRcq~I~F~~ls~------eEI~~~L~~iakkegI~-Id~eAL~~LA~~s~GnLR~Al~lLeqLsl 517 (1018)
.+.+|. .|...-. .++..... .++. +.+..+..+.....|++|.+...+.....
T Consensus 217 rl~srv---~v~~~~~~~~~d~d~~~~~~~-----~~l~~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~ 277 (297)
T COG2842 217 RLYSRV---RVGKLLGEKFPDADELAEIAA-----LVLPTEDELVLMQVIKETEGNIRRLDKILAGAVG 277 (297)
T ss_pred HHHHHh---hhHhhhhhhhhhhHHHHHHHH-----hhCccchHHHHHHHHHhcchhHhHHHHHHhhhhh
Confidence 233332 2222222 22222221 1222 56677777888888999988887776543
No 334
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.07 E-value=0.012 Score=61.88 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=36.7
Q ss_pred CceEEEEeCccccCHH-HH-----HHHHHHHhcc-CCcEEEEEEecCCCcchHHHhcCcc-EEEeCCC
Q 001748 410 RFKIFIIDECQLLHGE-TW-----ATVLNSLENI-SQHVVFVMITPELDKLPRSALSRSQ-KYHFPKI 469 (1018)
Q Consensus 410 ~~kVLIIDEaD~Ls~~-a~-----naLLk~LEep-p~~vifILaTn~~~kL~~tI~SRcq-~I~F~~l 469 (1018)
...++|||||+.+.+. .. ...++.+... ....-+|++|.++..+++.|+..+. .+.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 4579999999976432 22 2344666543 3467899999999999999987766 4555443
No 335
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.03 E-value=0.02 Score=70.66 Aligned_cols=36 Identities=14% Similarity=0.426 Sum_probs=27.8
Q ss_pred ceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEecC
Q 001748 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPE 449 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn~ 449 (1018)
..|+||||+-|+.......|++.+ +++..+||....
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~ 301 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDR 301 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecch
Confidence 369999999999988888888766 355677777643
No 336
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.01 E-value=0.024 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=21.8
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
.++++||+|+|||+++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 4799999999999999998887753
No 337
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.00 E-value=0.023 Score=76.02 Aligned_cols=149 Identities=21% Similarity=0.266 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccccc---ccc
Q 001748 313 NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDS---VRI 389 (1018)
Q Consensus 313 e~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIda---as~ 389 (1018)
......+..++..|++| +||-||.|+|||+++.-+|++.+. .++.+....|.|..+.-. +..
T Consensus 426 q~~la~~~~a~~~~~~p--illqG~tssGKtsii~~la~~~g~-------------~~vrinnhehtd~qeyig~y~~~~ 490 (1856)
T KOG1808|consen 426 QKNLADLARAISSGKFP--ILLQGPTSSGKTSIIKELARATGK-------------NIVRINNHEHTDLQEYIGTYVADD 490 (1856)
T ss_pred HHHHHHHHHHHhcCCCC--eEEecCcCcCchhHHHHHHHHhcc-------------CceehhccccchHHHHHHhhhcCC
Confidence 34445566677777764 899999999999999999999853 467777788887665422 122
Q ss_pred cchhHHHH--HHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc-----CCcE--------EEEEEecCCC---
Q 001748 390 NRSDRVGS--LMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI-----SQHV--------VFVMITPELD--- 451 (1018)
Q Consensus 390 ~~vd~IRe--Lie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep-----p~~v--------ifILaTn~~~--- 451 (1018)
++.-.+|+ ++..+ -+...+|+||++....+.+++|.++++.- |.+. ..+++|.++.
T Consensus 491 ~g~l~freg~LV~Al------r~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y 564 (1856)
T KOG1808|consen 491 NGDLVFREGVLVQAL------RNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTY 564 (1856)
T ss_pred CCCeeeehhHHHHHH------HhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcccc
Confidence 22222222 22222 12458999999999999999999999861 2221 2234444443
Q ss_pred ----cchHHHhcCccEEEeCCCChhHHHHHHHHHH
Q 001748 452 ----KLPRSALSRSQKYHFPKIKDGDIASRLRRIC 482 (1018)
Q Consensus 452 ----kL~~tI~SRcq~I~F~~ls~eEI~~~L~~ia 482 (1018)
.+..++.+|+..++|..+.++++..++...+
T Consensus 565 ~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 565 GGRKILSRALRNRFIELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred chhhhhhhcccccchhhhhhhcCchhhhhhhcccc
Confidence 2446677888899999999988887766554
No 338
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.99 E-value=0.018 Score=70.23 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=36.4
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSR 460 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SR 460 (1018)
+++++||||+- .|.++....|+..+++--+.+.+|-++..+. ...+.++
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~t--l~~~h~~ 582 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT--LWNFHSR 582 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchh--hHHHHhh
Confidence 57899999984 6888899999999998656667777776553 3344444
No 339
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.04 Score=64.89 Aligned_cols=129 Identities=14% Similarity=0.164 Sum_probs=65.2
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcc------c---ccccccccchhHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDV------K---EVDSVRINRSDRVGSLMK 400 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~Dv------i---eIdaas~~~vd~IReLie 400 (1018)
..++|.||+|+||||++..||..+...... .+.+..+...-. . +.-.........+..+.+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~----------~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~ 293 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGK----------SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKE 293 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHH
Confidence 468999999999999999999765321110 011111110000 0 000000011122334444
Q ss_pred HhcCCCCCCCceEEEEeCccccC--HHHHHHHHHHHhc----cCCcEEEEEEecCCCcchHHHhcCcc-----EEEeCCC
Q 001748 401 SAFLPPFSSRFKIFIIDECQLLH--GETWATVLNSLEN----ISQHVVFVMITPELDKLPRSALSRSQ-----KYHFPKI 469 (1018)
Q Consensus 401 ~a~~~P~~g~~kVLIIDEaD~Ls--~~a~naLLk~LEe----pp~~vifILaTn~~~kL~~tI~SRcq-----~I~F~~l 469 (1018)
.+. ..++.+||||=+.... ......|.++++. .+..+++|+.++.-..-...+..++. .+-|-++
T Consensus 294 ~l~----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKL 369 (432)
T PRK12724 294 TLA----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKL 369 (432)
T ss_pred HHH----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcc
Confidence 332 1356899999776653 3445566665543 24467777776655432333433332 4555555
Q ss_pred Chh
Q 001748 470 KDG 472 (1018)
Q Consensus 470 s~e 472 (1018)
+..
T Consensus 370 DEt 372 (432)
T PRK12724 370 DEA 372 (432)
T ss_pred cCC
Confidence 543
No 340
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.93 E-value=0.018 Score=61.76 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.8
Q ss_pred CcEEEEECCCchHHHHHHHHHHH
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAA 351 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAk 351 (1018)
++.++|+||.|.|||++.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 36789999999999999999985
No 341
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.91 E-value=0.023 Score=59.35 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=68.9
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC---------------------CCccccccccc
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR---------------------SRDVKEVDSVR 388 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~---------------------~~DvieIdaas 388 (1018)
..+.+|+++|.|||++|-.+|-......... ....++.|. .+.+.. ...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v--------~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~--~~~ 75 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKV--------GVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWET--QNR 75 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeE--------EEEEEecCCcccChHHHHHhcCcEEEECCCCCeecC--CCc
Confidence 4578888999999999998887664322110 001122221 111000 000
Q ss_pred ccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHH---HHHHHHHHHhccCCcEEEEEEecCCCcchHHHhcCcc
Q 001748 389 INRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE---TWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462 (1018)
Q Consensus 389 ~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~---a~naLLk~LEepp~~vifILaTn~~~kL~~tI~SRcq 462 (1018)
......+++..+.+...-..+.+.+||+||+-....- ..+.++.+|+..|+.+-+|++.... ++.|...+.
T Consensus 76 ~~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD 149 (173)
T TIGR00708 76 EADTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELAD 149 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCc
Confidence 0111224444444443333567899999998632211 2346788889999999999998876 456665554
No 342
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.89 E-value=0.05 Score=64.58 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.2
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
+..++|+|++|+||||++..+|..+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 567999999999999999999988753
No 343
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.88 E-value=0.047 Score=60.94 Aligned_cols=30 Identities=30% Similarity=0.255 Sum_probs=24.9
Q ss_pred HcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 324 SRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 324 k~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+.+++ ..++|.||+|+||||+.+.++..+.
T Consensus 107 ~~~~~-~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 107 RNNRV-LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred hCCCe-eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 34443 5789999999999999999998774
No 344
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.87 E-value=0.0063 Score=58.20 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.9
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
.|+|.|++|+||||+|+.||+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3799999999999999999999864
No 345
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.05 Score=58.19 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.9
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
+.++|+|+||+|||++|+.+|++|...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 358999999999999999999999643
No 346
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.78 E-value=0.021 Score=57.40 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=18.0
Q ss_pred cEEEEECCCchHHHHHH-HHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSAS-RIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLA-raLAkaL 353 (1018)
..+++.||.|+|||+.+ ..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 46899999999999944 4444444
No 347
>PRK14532 adenylate kinase; Provisional
Probab=95.76 E-value=0.074 Score=55.23 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=23.4
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
.++|.||||+||||+|+.||+.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 37899999999999999999998754
No 348
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.74 E-value=0.016 Score=67.60 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=53.2
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCC-Cccccc-------------ccccccchhHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRS-RDVKEV-------------DSVRINRSDRV 395 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~-~DvieI-------------daas~~~vd~I 395 (1018)
..++|.||+|+|||++++.+++.+...+.. ..|..+..+.. .++.++ +........-.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfd--------v~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va 240 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPE--------VELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVA 240 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCc--------eEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHH
Confidence 468999999999999999999987532110 01233333321 222111 10000011112
Q ss_pred HHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhcc
Q 001748 396 GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI 437 (1018)
Q Consensus 396 ReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEep 437 (1018)
..+++.+...-..++.-||||||++++.. +++.+--..-++
T Consensus 241 ~~v~e~Ae~~~~~GkdVVLlIDEitR~ar-Aqrei~~~~G~~ 281 (415)
T TIGR00767 241 EMVIEKAKRLVEHKKDVVILLDSITRLAR-AYNTVTPASGKV 281 (415)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEChhHHHH-HHHHhHhhcCCC
Confidence 23333333323456778999999999875 455544444443
No 349
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.74 E-value=0.11 Score=57.82 Aligned_cols=148 Identities=12% Similarity=0.206 Sum_probs=79.0
Q ss_pred cccCcHHHHHHHHHH---HHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCccccc
Q 001748 308 ELVGQNVVVRSLLSA---ISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEV 384 (1018)
Q Consensus 308 dLVGqe~iv~~L~~a---Ik~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieI 384 (1018)
++|--+++++.+.+. +... ..+.||.|..|+||+++++..|-..++. +.++
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~--~Gh~LLvG~~GsGr~sl~rLaa~i~~~~------------------------~~~i 62 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQP--RGHALLVGVGGSGRQSLARLAAFICGYE------------------------VFQI 62 (268)
T ss_dssp -----HHHHHHHHHHHHHHCST--TEEEEEECTTTSCHHHHHHHHHHHTTEE------------------------EE-T
T ss_pred ceeeHHHHHHHHHHHHHHHcCC--CCCeEEecCCCccHHHHHHHHHHHhccc------------------------eEEE
Confidence 355555666555443 4433 3567999999999999999766544322 2222
Q ss_pred ccccccchh----HHHHHHHHhcCCCCCCCceEEEEeCccccCHH---HHHH------------------HH--------
Q 001748 385 DSVRINRSD----RVGSLMKSAFLPPFSSRFKIFIIDECQLLHGE---TWAT------------------VL-------- 431 (1018)
Q Consensus 385 daas~~~vd----~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~---a~na------------------LL-------- 431 (1018)
.....-+.. +++.++..+ ...+...|++|.|.+-.... ..|. ++
T Consensus 63 ~~~~~y~~~~f~~dLk~~~~~a---g~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~ 139 (268)
T PF12780_consen 63 EITKGYSIKDFKEDLKKALQKA---GIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAK 139 (268)
T ss_dssp TTSTTTHHHHHHHHHHHHHHHH---HCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHH---hccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHH
Confidence 222222223 344444443 34556778898887644321 1111 11
Q ss_pred ------------H-HHhccCCcEEEEEEecCCC-------cchHHHhcCccEEEeCCCChhHHHHHHHHHHHH
Q 001748 432 ------------N-SLENISQHVVFVMITPELD-------KLPRSALSRSQKYHFPKIKDGDIASRLRRICVE 484 (1018)
Q Consensus 432 ------------k-~LEepp~~vifILaTn~~~-------kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakk 484 (1018)
. +++....+..+|++-+... +..|+|.++|.+.-|.+.+.+.+..+-......
T Consensus 140 ~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 140 AEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 1 1122244566666644322 345788899999999999988888776655543
No 350
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.73 E-value=0.012 Score=64.87 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.5
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.-++|.||+|+|||++++.+++.+.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 4589999999999999999998775
No 351
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.71 E-value=0.022 Score=58.56 Aligned_cols=23 Identities=39% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEECCCchHHHHHHHHHHHHHh
Q 001748 332 YLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+|++||||+|||+++..|+....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999998887653
No 352
>PF13479 AAA_24: AAA domain
Probab=95.68 E-value=0.01 Score=63.44 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=42.8
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCC-ccc-ccccccccchhHHHHHHHHhcCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSR-DVK-EVDSVRINRSDRVGSLMKSAFLPPF 407 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~-Dvi-eIdaas~~~vd~IReLie~a~~~P~ 407 (1018)
.-++|||++|+|||++|..+-+-+ ......|... ... ..+.......+++.+.++.+...
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l----------------~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~-- 65 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPL----------------FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED-- 65 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeE----------------EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc--
Confidence 458999999999999998873322 1112222110 000 11222222445666666554322
Q ss_pred CCCceEEEEeCcccc
Q 001748 408 SSRFKIFIIDECQLL 422 (1018)
Q Consensus 408 ~g~~kVLIIDEaD~L 422 (1018)
...+++||||-++.+
T Consensus 66 ~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 66 EADYDTIVIDSISWL 80 (213)
T ss_pred cCCCCEEEEECHHHH
Confidence 457899999987654
No 353
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.67 E-value=0.06 Score=57.22 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++|.||.|+||||+.+.++..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999998654
No 354
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.64 E-value=0.041 Score=61.05 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=39.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 303 PNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 303 P~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++++.-....++.|+.++...+ ..++|.||+|+||||+++++...+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~--GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPH--GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC--CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 4467777667777888888876543 4699999999999999999988774
No 355
>PRK06762 hypothetical protein; Provisional
Probab=95.58 E-value=0.079 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=23.0
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHH
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
+..++|+|++|+||||+|+.|++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999987
No 356
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.52 E-value=0.03 Score=55.82 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEECCCchHHHHHHHHHHHHHh
Q 001748 332 YLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
++|.|++|+||||+|+.+++.++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 78999999999999999999865
No 357
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.48 E-value=0.013 Score=68.33 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.3
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
-.+|+||+|+|||++++.+++.+..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Confidence 4689999999999999999998864
No 358
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.46 E-value=0.053 Score=68.76 Aligned_cols=53 Identities=21% Similarity=0.404 Sum_probs=35.9
Q ss_pred HHHHhcCCCCCCCceEEEEeCccc--cCHHHHHHHHHH-HhccCCcEEEEEEecCC
Q 001748 398 LMKSAFLPPFSSRFKIFIIDECQL--LHGETWATVLNS-LENISQHVVFVMITPEL 450 (1018)
Q Consensus 398 Lie~a~~~P~~g~~kVLIIDEaD~--Ls~~a~naLLk~-LEepp~~vifILaTn~~ 450 (1018)
++.++..-|...++.+|||||+|. +..+..-.|++- +...+++..+|+.+...
T Consensus 150 Llrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 150 LLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred HHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 556666677888999999999995 444544455544 55566567777665444
No 359
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.44 E-value=0.066 Score=73.89 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccc
Q 001748 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINR 391 (1018)
Q Consensus 312 qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~ 391 (1018)
.......+...+..+. ...++.|++|||||++++.+.+.+...... +....-.......+.......
T Consensus 431 s~~Q~~Av~~il~s~~--~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~-----------V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 431 SPSNKDAVSTLFTSTK--RFIIINGFGGTGSTEIAQLLLHLASEQGYE-----------IQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CHHHHHHHHHHHhCCC--CeEEEEECCCCCHHHHHHHHHHHHHhcCCe-----------EEEEeCCHHHHHHHHHHhcch
Confidence 3444455555555432 478999999999999999998876422100 011100000001111000000
Q ss_pred hhHHHHHHHHh--------------cCCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEE
Q 001748 392 SDRVGSLMKSA--------------FLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVM 445 (1018)
Q Consensus 392 vd~IReLie~a--------------~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifIL 445 (1018)
...|-.++... ...| .....||||||+.+++......|++..+.....++||.
T Consensus 498 A~Ti~~~l~~l~~~~~~~tv~~fl~~~~~-l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlvG 564 (1960)
T TIGR02760 498 ASTFITWVKNLFNDDQDHTVQGLLDKSSP-FSNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLN 564 (1960)
T ss_pred hhhHHHHHHhhcccccchhHHHhhcccCC-CCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEEc
Confidence 01111111110 0112 13567999999999999988889988876554444444
No 360
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.42 E-value=0.11 Score=57.13 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=41.6
Q ss_pred CceEEEEeCccccCHHHHHHHHHHHhc-cCCcEEEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHH
Q 001748 410 RFKIFIIDECQLLHGETWATVLNSLEN-ISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478 (1018)
Q Consensus 410 ~~kVLIIDEaD~Ls~~a~naLLk~LEe-pp~~vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L 478 (1018)
.+-++|+|++..- .--.+.+..++-. ..-++-+|+++.....+++.+++-+..+-+-+.+..++..++
T Consensus 98 ~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~ 166 (241)
T PF04665_consen 98 PRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIY 166 (241)
T ss_pred CCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHH
Confidence 3679999998541 1112223343332 234677888888888899999888875543355666654433
No 361
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.40 E-value=0.069 Score=58.85 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=59.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcC-CCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCC-----
Q 001748 304 NFFDELVGQNVVVRSLLSAISRG-MVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGR----- 377 (1018)
Q Consensus 304 ~tFddLVGqe~iv~~L~~aIk~g-rl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~----- 377 (1018)
.+++++.-.......+.+.+... +....++|.||+|+||||+++++...+..... ....+..-.
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~----------~iv~iEd~~E~~l~ 170 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDE----------RIVTIEDPPELRLP 170 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTS----------EEEEEESSS-S--S
T ss_pred ccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccccc----------ceEEeccccceeec
Confidence 36777775443334444443332 22357999999999999999999988753200 011111111
Q ss_pred CCcccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHhc
Q 001748 378 SRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLEN 436 (1018)
Q Consensus 378 ~~DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEe 436 (1018)
+.+...+... .....+.+++..+. ..++.+++|.|+-.- ++..+ ++.+..
T Consensus 171 ~~~~~~~~~~--~~~~~~~~~l~~~L----R~~pD~iiigEiR~~--e~~~~-~~a~~t 220 (270)
T PF00437_consen 171 GPNQIQIQTR--RDEISYEDLLKSAL----RQDPDVIIIGEIRDP--EAAEA-IQAANT 220 (270)
T ss_dssp CSSEEEEEEE--TTTBSHHHHHHHHT----TS--SEEEESCE-SC--HHHHH-HHHHHT
T ss_pred ccceEEEEee--cCcccHHHHHHHHh----cCCCCcccccccCCH--hHHHH-HHhhcc
Confidence 1111122111 12234555555542 234569999999764 55555 666654
No 362
>PRK14527 adenylate kinase; Provisional
Probab=95.38 E-value=0.14 Score=53.55 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.9
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
+..++|.||||+||||+|+.+|+.++..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~ 33 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLK 33 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4579999999999999999999988754
No 363
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.37 E-value=0.064 Score=65.06 Aligned_cols=52 Identities=13% Similarity=0.360 Sum_probs=38.9
Q ss_pred HHHHhcCCCCCCCceEEEEeCcc--ccCHHHHHHHHHHHhccCCcEEEEEEecC
Q 001748 398 LMKSAFLPPFSSRFKIFIIDECQ--LLHGETWATVLNSLENISQHVVFVMITPE 449 (1018)
Q Consensus 398 Lie~a~~~P~~g~~kVLIIDEaD--~Ls~~a~naLLk~LEepp~~vifILaTn~ 449 (1018)
|+.++...|..+.|.|+||||+| .|..+..-.|++-+-...++..+++.+..
T Consensus 366 LlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT 419 (902)
T KOG0923|consen 366 LLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSAT 419 (902)
T ss_pred HHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccc
Confidence 44455566777889999999999 46677788888888777777777666443
No 364
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.35 E-value=0.22 Score=57.24 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=35.0
Q ss_pred cccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 308 ELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 308 dLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.++....+...|..+++.+. .+|+.|++|+||||+++++...+.
T Consensus 142 ~~~~~~~~~~~L~~~v~~~~---nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 142 ELLAEKKIKEFLEHAVISKK---NIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred hhhhhHHHHHHHHHHHHcCC---cEEEECCCCCCHHHHHHHHHhhCC
Confidence 34555666777777777653 589999999999999999998774
No 365
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.33 E-value=0.056 Score=57.04 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..++++||+|+|||+++..++....
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~ 37 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAA 37 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988764
No 366
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.28 E-value=0.068 Score=59.57 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=22.3
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++|.|+||+||||+|+.|++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 568999999999999999999987
No 367
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.22 E-value=0.043 Score=58.01 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.7
Q ss_pred cEEEEECCCchHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAA 352 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAka 352 (1018)
..++|+||.|+||||+.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 56899999999999999999953
No 368
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.18 E-value=0.1 Score=60.82 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=22.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..++|+|+||+|||+++..+|..+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999998764
No 369
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.16 E-value=0.044 Score=56.63 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=31.8
Q ss_pred CCceEEEEeCcc-ccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 409 SRFKIFIIDECQ-LLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 409 g~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
.+++|+|+||.- .|.......+++.|.+......+|++|.+.+.
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 356799999975 67777777777777765445667778877653
No 370
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.14 E-value=0.071 Score=57.21 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=49.2
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCC----CCCCCccccceeccCCCCcccc--c----ccc-cccchhHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQ----KPCGLCRECALFSSGRSRDVKE--V----DSV-RINRSDRVGSL 398 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~----~PCg~C~sc~~i~sG~~~Dvie--I----daa-s~~~vd~IReL 398 (1018)
+.+++.||.|||||.+|-+.|..+........ .|--....-.-+..|...+-.+ + +.. ...+.+.++.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~ 99 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEEL 99 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 47899999999999999999976643211110 0000001111111121111000 0 000 00122345555
Q ss_pred HHHhc--CCC---CCC---CceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEec
Q 001748 399 MKSAF--LPP---FSS---RFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITP 448 (1018)
Q Consensus 399 ie~a~--~~P---~~g---~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn 448 (1018)
++.-. ..| ..| ...+|||||++.+++.....++ -....+..+|++..
T Consensus 100 ~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il---TR~g~~skii~~GD 154 (205)
T PF02562_consen 100 IQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL---TRIGEGSKIIITGD 154 (205)
T ss_dssp HHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH---TTB-TT-EEEEEE-
T ss_pred hhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH---cccCCCcEEEEecC
Confidence 54321 111 111 3579999999999987655554 44455667777754
No 371
>PRK08118 topology modulation protein; Reviewed
Probab=95.13 E-value=0.14 Score=52.98 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.4
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
-+++.||+|+||||+|+.|++.++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999998754
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.12 E-value=0.18 Score=57.54 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.7
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.||+|+||||++..+|..+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999875
No 373
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.11 E-value=0.22 Score=67.04 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=82.3
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhc------
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF------ 403 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~------ 403 (1018)
..+++.|.+|||||++.+.+...+........ .. +....-.+.-...+.... .....|..++....
T Consensus 853 r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g------~~-V~glAPTgkAa~~L~e~G-i~A~TIasfL~~~~~~~~~~ 924 (1623)
T PRK14712 853 RFTVVQGYAGVGKTTQFRAVMSAVNMLPESER------PR-VVGLGPTHRAVGEMRSAG-VDAQTLASFLHDTQLQQRSG 924 (1623)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccC------ce-EEEEechHHHHHHHHHhC-chHhhHHHHhccccchhhcc
Confidence 47899999999999999888776531100000 00 000111111111121111 11233444443210
Q ss_pred CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEec--CCC-----cchHHHhcC--ccEEEeCCCChhHH
Q 001748 404 LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITP--ELD-----KLPRSALSR--SQKYHFPKIKDGDI 474 (1018)
Q Consensus 404 ~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn--~~~-----kL~~tI~SR--cq~I~F~~ls~eEI 474 (1018)
..| .....||||||+-|+....+..|++.++.... .+||+.. ... +.+.-+..+ .....+..+-..
T Consensus 925 ~~~-~~~~~llIVDEASMV~~~~m~~ll~~~~~~ga--rvVLVGD~~QL~sV~aG~~F~~lq~~~~~~ta~L~eI~RQ-- 999 (1623)
T PRK14712 925 ETP-DFSNTLFLLDESSMVGNTDMARAYALIAAGGG--RAVASGDTDQLQAIAPGQPFRLQQTRSAADVVIMKEIVRQ-- 999 (1623)
T ss_pred cCC-CCCCcEEEEEccccccHHHHHHHHHhhhhCCC--EEEEEcchhhcCCCCCCHHHHHHHHcCCCCeEEeCeeecC--
Confidence 111 12457999999999999888899998876434 4455442 222 233334332 334444322211
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL 515 (1018)
Q Consensus 475 ~~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqL 515 (1018)
.++....+...+.|+...++..|+++
T Consensus 1000 ---------------~~elr~AV~~~~~g~~~~AL~~L~~~ 1025 (1623)
T PRK14712 1000 ---------------TPELREAVYSLINRDVERALSGLERV 1025 (1623)
T ss_pred ---------------CHHHHHHHHHHHcCCHHHHHHHHhhc
Confidence 23334445566678888888888753
No 374
>PRK14528 adenylate kinase; Provisional
Probab=95.10 E-value=0.14 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=23.3
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
.+++.||||+||||+++.+++.++..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~ 28 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIP 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999988654
No 375
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.09 E-value=0.068 Score=54.87 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=30.1
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCCcEEEEEEecCCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQHVVFVMITPELD 451 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~~vifILaTn~~~ 451 (1018)
+++++++||.- .|.......+.+.+.+. ...+|++|.+.+
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 56799999986 57777888888888775 245777777753
No 376
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.09 E-value=0.08 Score=55.21 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.0
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..++|.||+|+||||+++.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999988654
No 377
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.09 E-value=0.018 Score=59.57 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.7
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
++|.||||+||||+|+.||+.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~ 26 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLP 26 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 6899999999999999999998654
No 378
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.08 E-value=0.26 Score=59.42 Aligned_cols=118 Identities=16% Similarity=0.248 Sum_probs=88.2
Q ss_pred ceEEEEeCccccCH--HHHHHHHH---HHhccCCcEEEEEEecCCCcchHHHhcCccEEEeCCCChhHHHHHHHHHHHHh
Q 001748 411 FKIFIIDECQLLHG--ETWATVLN---SLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEE 485 (1018)
Q Consensus 411 ~kVLIIDEaD~Ls~--~a~naLLk---~LEepp~~vifILaTn~~~kL~~tI~SRcq~I~F~~ls~eEI~~~L~~iakke 485 (1018)
..|+|+.++|.+.. .....|.+ .+... +.+ +|+.+.. -.++..|.+-+.+++|+-|+.+|+...|+.++...
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~-~~~-~i~~~~~-~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~ 158 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQ-PKT-IIIIASE-LNIPKELKDLITVLEFPLPTESEIKKELTRLIKSL 158 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhC-CCE-EEEEcCC-CCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhc
Confidence 46999999998843 23333333 23332 233 4444433 35788888888899999999999999999988888
Q ss_pred cCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhCCccCHHHHHHHh
Q 001748 486 AINFDQAALDFIAAKSNG-SIRDAEMLLDQLSLLGKKITLSLAYELI 531 (1018)
Q Consensus 486 gI~Id~eAL~~LA~~s~G-nLR~Al~lLeqLsl~g~~IT~edV~ell 531 (1018)
++.++++.++.+++.+.| +.-++.+.+.+.....+.|+.+++..++
T Consensus 159 ~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (489)
T CHL00195 159 NIKIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDENSIPLIL 205 (489)
T ss_pred CCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChhhHHHHH
Confidence 999999999999999877 7888888888876666778888766554
No 379
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.03 E-value=0.33 Score=56.86 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=62.8
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHH------------
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVG------------ 396 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IR------------ 396 (1018)
...+.|.||.|+||||+.--||......... ....++-+|.-+...+++++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-----------------~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-----------------KKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-----------------cceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 5679999999999998777676655411110 01112222222222222222
Q ss_pred -----HHHHHhcCCCCCCCceEEEEeCccccCH--HHHHHHHHHHhc-cCCcEEEEEEecCCCcchHHHhcCccE
Q 001748 397 -----SLMKSAFLPPFSSRFKIFIIDECQLLHG--ETWATVLNSLEN-ISQHVVFVMITPELDKLPRSALSRSQK 463 (1018)
Q Consensus 397 -----eLie~a~~~P~~g~~kVLIIDEaD~Ls~--~a~naLLk~LEe-pp~~vifILaTn~~~kL~~tI~SRcq~ 463 (1018)
++.+.+.. ...+.+|+||=+.+=.. .-...|-.++.. .+-.+.+++.++...+-+..|..++..
T Consensus 266 v~~~~el~~ai~~---l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~ 337 (407)
T COG1419 266 VYSPKELAEAIEA---LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSL 337 (407)
T ss_pred ecCHHHHHHHHHH---hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhcc
Confidence 22222211 23467999998875432 233344444443 345778888888777666777766553
No 380
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.02 E-value=0.043 Score=62.78 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.++..+.|+|+-|.|||.|.-.|-..+-
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCC
Confidence 3567899999999999999999988774
No 381
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=94.99 E-value=0.24 Score=55.95 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=76.1
Q ss_pred cccccC-cHHHHHHHHHHHHc-----CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCC
Q 001748 306 FDELVG-QNVVVRSLLSAISR-----GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSR 379 (1018)
Q Consensus 306 FddLVG-qe~iv~~L~~aIk~-----grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~ 379 (1018)
++++.+ ..+++..|.+++.. .....+++|+|+.|+||+++++.+.+.++-.+.. .... .
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~-------------~~~~--~ 111 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATT-------------AVAS--L 111 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhcc-------------CCcc--h
Confidence 455554 45566677766532 3455679999999999999999998777522100 0000 0
Q ss_pred cccccccccccchhHHHHHHHHhcCCCCCCCceEEEEeCccccCHHHHHHHHHHHh---------------ccCCcEEEE
Q 001748 380 DVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLE---------------NISQHVVFV 444 (1018)
Q Consensus 380 DvieIdaas~~~vd~IReLie~a~~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LE---------------epp~~vifI 444 (1018)
.+..++... -.+. . ..+.++++++|++.-..... ..+|.|- +......+|
T Consensus 112 ~~~~~~~~~----f~~a---------~-l~gk~l~~~~E~~~~~~~~~-~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i 176 (304)
T TIGR01613 112 KMNEFQEHR----FGLA---------R-LEGKRAVIGDEVQKGYRDDE-STFKSLTGGDTITARFKNKDPFEFTPKFTLV 176 (304)
T ss_pred hhhhccCCC----chhh---------h-hcCCEEEEecCCCCCccccH-HhhhhhhcCCeEEeecccCCcEEEEEeeEEE
Confidence 000000000 0000 1 12467999999874221111 2333332 123356789
Q ss_pred EEecCCCcc---hHHHhcCccEEEeCC
Q 001748 445 MITPELDKL---PRSALSRSQKYHFPK 468 (1018)
Q Consensus 445 LaTn~~~kL---~~tI~SRcq~I~F~~ 468 (1018)
++||+...+ ..++.+|+.++.|..
T Consensus 177 ~~tN~~P~~~~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 177 QSTNHLPRIRGFDGGIKRRLRIIPFTK 203 (304)
T ss_pred EEcCCCCccCCCChhheeeEEEEeccC
Confidence 999987755 368899999999864
No 382
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.99 E-value=0.048 Score=59.52 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.6
Q ss_pred EEEECCCchHHHHHHHHHHHHHh
Q 001748 332 YLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
++|.|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999885
No 383
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.98 E-value=0.14 Score=62.07 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
...+.|.||.|+||||++..||..+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988653
No 384
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.97 E-value=0.057 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.0
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++|.||.|.|||++.+.++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987543
No 385
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.97 E-value=0.12 Score=54.74 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.1
Q ss_pred cEEEEECCCchHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAA 351 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAk 351 (1018)
+.++|.||.|.||||+.+.++.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4699999999999999999984
No 386
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.93 E-value=0.032 Score=59.42 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEECCCchHHHHHHHHHHHHH
Q 001748 332 YLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL 353 (1018)
+++.|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999998873
No 387
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.92 E-value=0.16 Score=60.94 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.1
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.||.|+||||++..||..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 35799999999999999999998763
No 388
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=94.89 E-value=0.14 Score=56.06 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=58.9
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc--eeccC-CCCccccccccc-ccchhHHHHHHHHhcCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA--LFSSG-RSRDVKEVDSVR-INRSDRVGSLMKSAFLP 405 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~--~i~sG-~~~DvieIdaas-~~~vd~IReLie~a~~~ 405 (1018)
+.++++||...|||++.|.++....-.+..-.-||..+.... .++.. ...|-.+.+.+. .....++..+++.+.
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~-- 121 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNAT-- 121 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH----
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcc--
Confidence 679999999999999999998876433333334544332111 00000 000000000000 012345556666542
Q ss_pred CCCCCceEEEEeCccccCHH-----HHHHHHHHHhccCCcEEEEEEecCCC
Q 001748 406 PFSSRFKIFIIDECQLLHGE-----TWATVLNSLENISQHVVFVMITPELD 451 (1018)
Q Consensus 406 P~~g~~kVLIIDEaD~Ls~~-----a~naLLk~LEepp~~vifILaTn~~~ 451 (1018)
.+.+++|||+..=+.. ...++++.|.+. .+..+|++|...+
T Consensus 122 ----~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~-~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 122 ----EKSLVLIDELGRGTNPEEGIAIAIAILEYLLEK-SGCFVIIATHFHE 167 (235)
T ss_dssp ----TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHT-TT-EEEEEES-GG
T ss_pred ----cceeeecccccCCCChhHHHHHHHHHHHHHHHh-ccccEEEEeccch
Confidence 4679999999765422 344566666652 2445666776553
No 389
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.14 Score=59.85 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.9
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.||.|+||||++..+|..+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998763
No 390
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.88 E-value=0.36 Score=55.49 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
.-+..+-|.|++|+||||++..++..+..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567999999999999999999998863
No 391
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.88 E-value=0.085 Score=56.80 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAA 352 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAka 352 (1018)
..++|.||.|.|||++.+.++..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 56899999999999999999753
No 392
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.88 E-value=0.05 Score=55.69 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=28.7
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccC-CcEEEEEEecCCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENIS-QHVVFVMITPELD 451 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp-~~vifILaTn~~~ 451 (1018)
+++++++||.- .|.......+.+.|.+.. ....+|++|.+.+
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45799999975 577777777777776542 2456677776654
No 393
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.87 E-value=0.06 Score=58.08 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.3
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++++|++|+|||+++..|+...
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 569999999999999999997654
No 394
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.86 E-value=0.15 Score=57.85 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.4
Q ss_pred HHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 320 LSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 320 ~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
...+...+.|-.+++.|++|+|||++|..||..++..
T Consensus 83 ~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 83 WRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3445555667789999999999999999999999754
No 395
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.84 E-value=0.11 Score=56.28 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.5
Q ss_pred cEEEEECCCchHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAA 351 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAk 351 (1018)
..++|.||.|.|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999988
No 396
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.81 E-value=0.08 Score=63.09 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..+||+|+||+|||+++..++..+.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999988764
No 397
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.75 E-value=0.12 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.1
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..+.|+||+|+|||+++..++...
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHe
Confidence 568999999999999999998653
No 398
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.73 E-value=0.16 Score=57.44 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=37.3
Q ss_pred CCccccc--C--cHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 304 NFFDELV--G--QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 304 ~tFddLV--G--qe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.++++++ | .......|..+++.+ ..+|+.||.|+||||+++++...+.
T Consensus 106 ~tl~~l~~~g~~~~~~~~~L~~~v~~~---~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 106 FTLDDYVEAGIMTAAQRDVLREAVLAR---KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCHHHHHhcCCCCHHHHHHHHHHHHcC---CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4667765 2 345667788888754 4689999999999999999998874
No 399
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.70 E-value=0.14 Score=57.17 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.2
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.||+|+||||++..+|..+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999998874
No 400
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.67 E-value=0.11 Score=52.08 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=56.3
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHH--HHHHhcCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGS--LMKSAFLPPF 407 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IRe--Lie~a~~~P~ 407 (1018)
..+.+.||.|+||||++++++..+... .+ . . ...|. ..+..+...+ ..+.+. +...+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~---~G----~----i-~~~~~-~~i~~~~~lS---~G~~~rv~laral----- 85 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPD---EG----I----V-TWGST-VKIGYFEQLS---GGEKMRLALAKLL----- 85 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCC---ce----E----E-EECCe-EEEEEEccCC---HHHHHHHHHHHHH-----
Confidence 568999999999999999998754211 11 0 0 11111 0111111111 112222 22222
Q ss_pred CCCceEEEEeCcc-ccCHHHHHHHHHHHhccCCcEEEEEEecCCC
Q 001748 408 SSRFKIFIIDECQ-LLHGETWATVLNSLENISQHVVFVMITPELD 451 (1018)
Q Consensus 408 ~g~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~~vifILaTn~~~ 451 (1018)
..+++++++||.- .|.......|.+.+.+.. ..+|++|.+.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~til~~th~~~ 128 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDRY 128 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEECCHH
Confidence 2345699999975 677777778888887652 35666776654
No 401
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.65 E-value=0.14 Score=69.42 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=82.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhc-----C
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-----L 404 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~-----~ 404 (1018)
...++.|.+|||||++.+.+...+........ ..+....-.+.-...+.... .....|..++.... .
T Consensus 985 r~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~-------~~V~glAPTgrAAk~L~e~G-i~A~TI~s~L~~~~~~~~~~ 1056 (1747)
T PRK13709 985 RFTVVQGYAGVGKTTQFRAVMSAVNTLPESER-------PRVVGLGPTHRAVGEMRSAG-VDAQTLASFLHDTQLQQRSG 1056 (1747)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhhcccC-------ceEEEECCcHHHHHHHHhcC-cchhhHHHHhcccccccccc
Confidence 47899999999999999999887642100000 00111111111111111111 11233444443211 0
Q ss_pred CCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEec--CCC-----cchHHHhcC--ccEEEeCCCChhHHH
Q 001748 405 PPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITP--ELD-----KLPRSALSR--SQKYHFPKIKDGDIA 475 (1018)
Q Consensus 405 ~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaTn--~~~-----kL~~tI~SR--cq~I~F~~ls~eEI~ 475 (1018)
........||||||+-|+.......|++.++.... .+||+.. ... ..+..+..+ .....+..+-...
T Consensus 1057 ~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~ga--rvVLVGD~~QL~sV~aG~~f~~l~~~~~i~~~~L~eI~RQ~-- 1132 (1747)
T PRK13709 1057 ETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGG--RAVSSGDTDQLQAIAPGQPFRLMQTRSAADVAIMKEIVRQT-- 1132 (1747)
T ss_pred cCCCCCCcEEEEEccccccHHHHHHHHHhhhcCCC--EEEEecchHhcCCCCCChHHHHHHHhCCCCeEEeCeEEcCc--
Confidence 11113457999999999999999999999876433 4555543 222 333444432 2233333222111
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001748 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL 515 (1018)
Q Consensus 476 ~~L~~iakkegI~Id~eAL~~LA~~s~GnLR~Al~lLeqL 515 (1018)
++....+.....|++..++..|++.
T Consensus 1133 ---------------~~lr~Av~~~~~g~~~~al~~L~~~ 1157 (1747)
T PRK13709 1133 ---------------PELREAVYSLINRDVERALSGIESV 1157 (1747)
T ss_pred ---------------HHHHHHHHHHHccCHHHHHHHHHhc
Confidence 1222333445568888888888764
No 402
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.64 E-value=0.17 Score=51.97 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=31.2
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCCcEEEEEEecCCCc
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~~vifILaTn~~~k 452 (1018)
+++++++||.- .|.......|.+.|.+......+|++|.+.+.
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 45799999975 57777777777777765445667777877653
No 403
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.60 E-value=0.14 Score=53.85 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.9
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.||+|+|||++++.++..+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35699999999999999999998763
No 404
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=94.60 E-value=0.16 Score=59.02 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 315 VVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 315 iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.+..|+..++.-.-.+.++|+|||.|||+.++-.|.+.+.
T Consensus 248 Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~ 287 (432)
T PF00519_consen 248 FLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 287 (432)
T ss_dssp HHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhC
Confidence 3455666666434457899999999999999999999885
No 405
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.58 E-value=0.028 Score=56.85 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.2
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
+..++|+|++|+|||++|+.||+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999999863
No 406
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.53 E-value=0.19 Score=56.16 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=56.9
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCC-CCCCCCcc---ccceeccCCCCcccccccccccchhHHHHHHHHhcCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLED-QKPCGLCR---ECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP 405 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~-~~PCg~C~---sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~ 405 (1018)
..++|.||+|+|||++++.++..+....... ...+.... .-+....+...+ +........+.+.+.++.+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~---~~~~~~~~~~~l~~~l~~l~~- 151 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRALTYFKE- 151 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC---ceEEecCCHHHHHHHHHHHHh-
Confidence 5799999999999999999998874211100 00000000 000000000000 000000122334444443321
Q ss_pred CCCCCceEEEEeCccccC--HHHHHHHHHHHhcc-CCcEEEEEEec
Q 001748 406 PFSSRFKIFIIDECQLLH--GETWATVLNSLENI-SQHVVFVMITP 448 (1018)
Q Consensus 406 P~~g~~kVLIIDEaD~Ls--~~a~naLLk~LEep-p~~vifILaTn 448 (1018)
..++.++|||-+.... ......|.++++.. |..+++++.++
T Consensus 152 --~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~ 195 (270)
T PRK06731 152 --EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 195 (270)
T ss_pred --cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCc
Confidence 2346899999998874 45566677766543 23566666544
No 407
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.52 E-value=0.2 Score=63.57 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAA 352 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAka 352 (1018)
..++|+||.|.|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 57999999999999999999877
No 408
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.50 E-value=0.086 Score=55.45 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=30.1
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCC-cEEEEEEecCCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQ-HVVFVMITPELD 451 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~-~vifILaTn~~~ 451 (1018)
+++++++||.- .|.......+++.|.+... ...+|++|.+..
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 45799999975 5677777778777776532 456777777764
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.48 E-value=0.16 Score=51.96 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.5
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
+..++.||.|+|||++.++++-.+.-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999998776653
No 410
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.45 E-value=0.13 Score=56.55 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
..+-|.||+||||||+.+++|-....
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35889999999999999999986643
No 411
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.44 E-value=0.096 Score=56.94 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.0
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..+++.||+|+|||+++..++..+
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999986665554
No 412
>PRK07261 topology modulation protein; Provisional
Probab=94.44 E-value=0.1 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.7
Q ss_pred EEEECCCchHHHHHHHHHHHHHhc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
+++.|++|+||||+|+.|++.++.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999988753
No 413
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.44 E-value=0.27 Score=55.69 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 314 VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 314 ~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
++...|...++.+ ..++|.||.|+||||+++++...+.
T Consensus 132 ~~~~~l~~~v~~~---~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 132 DIKEFLRLAIASR---KNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHHHHHHhhCC---CEEEEECCCCCCHHHHHHHHHccCC
Confidence 3444455556655 4799999999999999999987663
No 414
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.43 E-value=0.2 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.0
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..+++.||+|+||+++.+++|....
T Consensus 30 e~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccC
Confidence 3589999999999999999998653
No 415
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.42 E-value=0.19 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..++|.||+|+||||++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999999998875
No 416
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.17 Score=51.09 Aligned_cols=104 Identities=19% Similarity=0.332 Sum_probs=56.3
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCc----------ccccccccccchhHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD----------VKEVDSVRINRSDRVGSLM 399 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~D----------vieIdaas~~~vd~IReLi 399 (1018)
..+.|.||.|+|||+++++++..+.... |. ....|.... +..+...+ .+..+--.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~-------G~-----i~~~~~~~~~~~~~~~~~~i~~~~qlS-~G~~~r~~l~ 92 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTS-------GE-----ILIDGKDIAKLPLEELRRRIGYVPQLS-GGQRQRVALA 92 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCc-------cE-----EEECCEEcccCCHHHHHhceEEEeeCC-HHHHHHHHHH
Confidence 5799999999999999999987653111 10 111111000 00000011 0111111122
Q ss_pred HHhcCCCCCCCceEEEEeCcc-ccCHHHHHHHHHHHhccCC-cEEEEEEecCCC
Q 001748 400 KSAFLPPFSSRFKIFIIDECQ-LLHGETWATVLNSLENISQ-HVVFVMITPELD 451 (1018)
Q Consensus 400 e~a~~~P~~g~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~-~vifILaTn~~~ 451 (1018)
..+.. ..+++++||.. .|.......|.+.+.+... ...+|+++.+.+
T Consensus 93 ~~l~~-----~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 93 RALLL-----NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred HHHhc-----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 22222 35799999986 5777777777777765433 345677776654
No 417
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.25 Score=61.34 Aligned_cols=226 Identities=18% Similarity=0.168 Sum_probs=122.0
Q ss_pred ccccCCCCcccccCcHHHHHHHHHH-----HHcCCCCcEEEEEC----CCchHHHHHHHHHHHHHhc-cCCCCCCCCCCc
Q 001748 298 SQKFRPNFFDELVGQNVVVRSLLSA-----ISRGMVTSFYLFHG----PRGTGKTSASRIFAAALNC-LSLEDQKPCGLC 367 (1018)
Q Consensus 298 ~eKyRP~tFddLVGqe~iv~~L~~a-----Ik~grl~~ayLf~G----PpGTGKTtLAraLAkaL~c-~~~~~~~PCg~C 367 (1018)
.+.-+|..|.++.+++......... ..-+.....+..+| +.|++++..++.+-...-. .......++..-
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 174 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFV 174 (647)
T ss_pred ccccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhh
Confidence 4566778999999987666555444 11233344567788 9999999988765544211 100011111111
Q ss_pred cccceeccCCCCcccccccccccchhHHHHHHHHhcCCCC------------------CCCceEEEEeCccccCHHHHHH
Q 001748 368 RECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPF------------------SSRFKIFIIDECQLLHGETWAT 429 (1018)
Q Consensus 368 ~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~P~------------------~g~~kVLIIDEaD~Ls~~a~na 429 (1018)
.. ......+-+.+ .-.....|+..+...|. .+...||||||+..|....++.
T Consensus 175 ~~---~~~~~~p~v~a-------~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~ 244 (647)
T COG1067 175 EL---SPLDGAPVVFA-------TGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWK 244 (647)
T ss_pred hh---ccccCCcEEec-------CCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHH
Confidence 00 00000000000 00112233333333333 2356799999999999887788
Q ss_pred HHHHHhcc---------------------CCcEEEEEEecCCC--cchHHHhcCcc---E-EEeCCC---ChhHHHHH--
Q 001748 430 VLNSLENI---------------------SQHVVFVMITPELD--KLPRSALSRSQ---K-YHFPKI---KDGDIASR-- 477 (1018)
Q Consensus 430 LLk~LEep---------------------p~~vifILaTn~~~--kL~~tI~SRcq---~-I~F~~l---s~eEI~~~-- 477 (1018)
+||.+.+- |-+..+|++.+... .+.+...+|.. . ..|... +++...+.
T Consensus 245 ~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~ 324 (647)
T COG1067 245 LLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQ 324 (647)
T ss_pred HHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHH
Confidence 88777542 33566777765432 34444444433 2 555433 33333333
Q ss_pred --HHHHHHHhc-CCCCHHHHHHHHHHcC----------CCHHHHHHHHHHHHhh-----CCccCHHHHHHHhcc
Q 001748 478 --LRRICVEEA-INFDQAALDFIAAKSN----------GSIRDAEMLLDQLSLL-----GKKITLSLAYELIGI 533 (1018)
Q Consensus 478 --L~~iakkeg-I~Id~eAL~~LA~~s~----------GnLR~Al~lLeqLsl~-----g~~IT~edV~ellg~ 533 (1018)
.+.+.+..+ ..++.+|+..|.+.+. -.+|++.+++..+... ..-||.++|++++..
T Consensus 325 ~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 325 FYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 333333424 4689999877765442 3678888888855332 235888888887653
No 418
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.34 E-value=0.12 Score=49.26 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=52.1
Q ss_pred EEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccce-eccCCCCcccccccccccch-------hHHHHHHHHhc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL-FSSGRSRDVKEVDSVRINRS-------DRVGSLMKSAF 403 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~-i~sG~~~DvieIdaas~~~v-------d~IReLie~a~ 403 (1018)
++|.|++|+||||+.++|...-... .....++-.-..... ...+ ..+..+|..+.... ..++.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~-~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAK-VSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSE-ESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcccccc-ccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999998521100 111111111110000 0111 12233443333211 12344555542
Q ss_pred CCCCCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEE
Q 001748 404 LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVM 445 (1018)
Q Consensus 404 ~~P~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifIL 445 (1018)
. ...-++++| ++....+....+++.|+ ....+++|+
T Consensus 79 ~----~d~ii~vv~-~~~~~~~~~~~~~~~l~-~~~~~i~v~ 114 (116)
T PF01926_consen 79 K----SDLIIYVVD-ASNPITEDDKNILRELK-NKKPIILVL 114 (116)
T ss_dssp T----ESEEEEEEE-TTSHSHHHHHHHHHHHH-TTSEEEEEE
T ss_pred H----CCEEEEEEE-CCCCCCHHHHHHHHHHh-cCCCEEEEE
Confidence 2 234577777 77654566677777776 444455544
No 419
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.34 E-value=0.037 Score=57.96 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=17.9
Q ss_pred EEEEECCCchHHHHHHHHHHHHH
Q 001748 331 FYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999998777776665
No 420
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=94.32 E-value=0.18 Score=66.68 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHH
Q 001748 313 NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 313 e~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
......|..+|..+. .+++.|++|+||||.+=.+..+.
T Consensus 69 ~~~~~~Il~~l~~~~---vvii~g~TGSGKTTqlPq~lle~ 106 (1283)
T TIGR01967 69 SAKREDIAEAIAENQ---VVIIAGETGSGKTTQLPKICLEL 106 (1283)
T ss_pred HHHHHHHHHHHHhCc---eEEEeCCCCCCcHHHHHHHHHHc
Confidence 455577778887654 68999999999999775554443
No 421
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.31 E-value=0.23 Score=51.12 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=29.7
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccC-CcEEEEEEecCCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENIS-QHVVFVMITPELD 451 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp-~~vifILaTn~~~ 451 (1018)
+++++|+||.- .|.......+++.|.+.. ....+|++|.+.+
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45799999975 677777777777776543 2456777777654
No 422
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.29 E-value=0.15 Score=53.38 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=30.1
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhcc-CCcEEEEEEecCCCcc
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENI-SQHVVFVMITPELDKL 453 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEep-p~~vifILaTn~~~kL 453 (1018)
+++++++||.- .|.......|.+.+.+. .....+|++|.+.+.+
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 56799999986 57777777777777532 2345677777776533
No 423
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.28 E-value=0.4 Score=50.56 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=22.0
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHH
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
+..++|.||+|+|||++++.|.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4579999999999999999998754
No 424
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.27 E-value=0.46 Score=56.30 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=34.0
Q ss_pred HHHHhcCCCCCCCceEEEEeCccc--cCHHHHHHHHHHHhccCCcEEEEEEe
Q 001748 398 LMKSAFLPPFSSRFKIFIIDECQL--LHGETWATVLNSLENISQHVVFVMIT 447 (1018)
Q Consensus 398 Lie~a~~~P~~g~~kVLIIDEaD~--Ls~~a~naLLk~LEepp~~vifILaT 447 (1018)
++.++...|+.++++|||+||+|. +..+..-.|||-+-...++..+|+.+
T Consensus 147 LlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmS 198 (699)
T KOG0925|consen 147 LLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMS 198 (699)
T ss_pred HHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEee
Confidence 566677889999999999999995 55555666666543323455555544
No 425
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.26 E-value=0.14 Score=61.24 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=47.3
Q ss_pred cccccCCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 297 L~eKyRP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
+...+....|+++.........+.+++.... ..+|++||.|+||||+..++.+.++..
T Consensus 228 l~~~~~~l~l~~Lg~~~~~~~~~~~~~~~p~--GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 228 LDKDQVILDLEKLGMSPFQLARLLRLLNRPQ--GLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred eccccccCCHHHhCCCHHHHHHHHHHHhCCC--eEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 3344446678998888888888998887644 689999999999999999999998754
No 426
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.26 E-value=0.2 Score=56.91 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=24.2
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
+..+++.||.|+|||++|..||+.+++
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 357899999999999999999999864
No 427
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.21 E-value=0.15 Score=53.46 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=28.7
Q ss_pred ceEEEEeCcc-ccCHHHHHHHHHHHhccC-CcEEEEEEecCCC
Q 001748 411 FKIFIIDECQ-LLHGETWATVLNSLENIS-QHVVFVMITPELD 451 (1018)
Q Consensus 411 ~kVLIIDEaD-~Ls~~a~naLLk~LEepp-~~vifILaTn~~~ 451 (1018)
.+++++||.- .|.......|++.|.+.. ....+|++|.+.+
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6799999975 577777777777766542 2456777887764
No 428
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.21 Score=54.85 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=39.0
Q ss_pred CCceEEEEeCc-cccCHHHHHHHHHHHhcc---CCcEEEEEEecCCCcchHHHhcCc
Q 001748 409 SRFKIFIIDEC-QLLHGETWATVLNSLENI---SQHVVFVMITPELDKLPRSALSRS 461 (1018)
Q Consensus 409 g~~kVLIIDEa-D~Ls~~a~naLLk~LEep---p~~vifILaTn~~~kL~~tI~SRc 461 (1018)
..+.++|+||. +.|...+...|+++|++. +...-+|++|...+.+++-+..+.
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 35679999995 567667777888888764 335668888988888887766544
No 429
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.20 E-value=0.034 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEECCCchHHHHHHHHHHHHH
Q 001748 332 YLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL 353 (1018)
++|.|++|+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999986
No 430
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.19 E-value=0.17 Score=53.06 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=55.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccc-cccchhHHH-HHHHHhcCCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV-RINRSDRVG-SLMKSAFLPPF 407 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaa-s~~~vd~IR-eLie~a~~~P~ 407 (1018)
..+.|.||.|+||||++++++..+... .+ . ....|.. +..+... ...+-+.-+ .+...+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G----~-----i~~~g~~--i~~~~q~~~LSgGq~qrv~laral----- 86 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPN---GD----N-----DEWDGIT--PVYKPQYIDLSGGELQRVAIAAAL----- 86 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCC---Cc----E-----EEECCEE--EEEEcccCCCCHHHHHHHHHHHHH-----
Confidence 468999999999999999998765311 11 0 0011110 0011000 011111111 222222
Q ss_pred CCCceEEEEeCcc-ccCHHHHHHHHHHHhccCC--cEEEEEEecCCC
Q 001748 408 SSRFKIFIIDECQ-LLHGETWATVLNSLENISQ--HVVFVMITPELD 451 (1018)
Q Consensus 408 ~g~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~--~vifILaTn~~~ 451 (1018)
..+++++++||.- .|.......+++.+.+... ...+|++|.+.+
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 2245799999986 5667777777777765421 245677777653
No 431
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.17 E-value=0.11 Score=59.52 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.5
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..++++||+|+|||++|..++....
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999988877653
No 432
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.14 E-value=0.27 Score=58.23 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=21.9
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHH
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
+..+.|.||.|+||||++..||..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
No 433
>PRK08356 hypothetical protein; Provisional
Probab=94.14 E-value=0.13 Score=54.24 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.6
Q ss_pred cEEEEECCCchHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAA 351 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAk 351 (1018)
..++|+||||+||||+|+.|++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999964
No 434
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.05 E-value=0.21 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEEECCCchHHHHHHHHHHHHHh
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.++|.||+|+|||++++.++..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998875
No 435
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.05 E-value=0.37 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.9
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..++|.||+|+||||+++++...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999998875
No 436
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.05 E-value=0.72 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=22.1
Q ss_pred EEEECCCchHHHHHHHHHHHHHhc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
++|.|++|+|||++|+.||+.++.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999999864
No 437
>COG3899 Predicted ATPase [General function prediction only]
Probab=94.05 E-value=1.5 Score=56.46 Aligned_cols=201 Identities=14% Similarity=0.131 Sum_probs=116.2
Q ss_pred ccCcHHHHHHHHHHHHc--CCCCcEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCc-cc-cc
Q 001748 309 LVGQNVVVRSLLSAISR--GMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD-VK-EV 384 (1018)
Q Consensus 309 LVGqe~iv~~L~~aIk~--grl~~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~D-vi-eI 384 (1018)
++|.+..+.+|...+.+ +.....+++.|.+|.|||.+++.+.+-+... ....-++.|.. +.....+. +. .+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q---~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQ---FERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhccc---ccCCCchHHHHHHH
Confidence 67888888888887764 2234579999999999999999999987643 11222233321 11111100 00 00
Q ss_pred -----------------------ccccccc---hhHHHHH--------------------------HHHhcCCCCCCCce
Q 001748 385 -----------------------DSVRINR---SDRVGSL--------------------------MKSAFLPPFSSRFK 412 (1018)
Q Consensus 385 -----------------------daas~~~---vd~IReL--------------------------ie~a~~~P~~g~~k 412 (1018)
.+.+.++ ++.+.++ ...+.......++-
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 0000000 0000000 00110011122356
Q ss_pred EEEEeCccccCHHHHHHHHHHHhccC-----CcEEEEEEecCCCcchHHHhcC--ccEEEeCCCChhHHHHHHHHHHHHh
Q 001748 413 IFIIDECQLLHGETWATVLNSLENIS-----QHVVFVMITPELDKLPRSALSR--SQKYHFPKIKDGDIASRLRRICVEE 485 (1018)
Q Consensus 413 VLIIDEaD~Ls~~a~naLLk~LEepp-----~~vifILaTn~~~kL~~tI~SR--cq~I~F~~ls~eEI~~~L~~iakke 485 (1018)
|+|+|++|-......+.|-..+.... .+-++.+.+.. ..+....++. ...+.+.|++..+....+...+..
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~-~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~- 234 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLR-PTLGEILKSATNITTITLAPLSRADTNQLVAATLGC- 234 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCcc-chhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC-
Confidence 99999999998887777777776654 11122222222 2233333333 347999999999999998887743
Q ss_pred cCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 001748 486 AINFDQAALDFIAAKSNGSIRDAEMLLDQLS 516 (1018)
Q Consensus 486 gI~Id~eAL~~LA~~s~GnLR~Al~lLeqLs 516 (1018)
......+.+..+.+.+.|++-=+.+.+..+.
T Consensus 235 ~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~ 265 (849)
T COG3899 235 TKLLPAPLLELIFEKTKGNPFFIEEFLKALY 265 (849)
T ss_pred cccccchHHHHHHHHhcCCCccHHHHHHHHH
Confidence 2456677789999999999877777666654
No 438
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.04 E-value=0.16 Score=56.06 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.2
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++++||||+|||+++..|+...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 569999999999999999987754
No 439
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.00 E-value=0.33 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..+.|+||+|+|||+++..+|...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHh
Confidence 569999999999999999998765
No 440
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.99 E-value=0.36 Score=51.21 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=31.7
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCCcEEEEEEecCCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQHVVFVMITPELD 451 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~~vifILaTn~~~ 451 (1018)
..+++++||.. .|.......++..|.+......+|++|.+.+
T Consensus 135 ~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~ 177 (197)
T cd03278 135 PSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG 177 (197)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 34799999987 5777788888888887654566777887764
No 441
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.95 E-value=0.22 Score=58.97 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.6
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.|++|+||||++..||..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999998875
No 442
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.87 E-value=0.19 Score=63.18 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.4
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHH
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
+..++|.||.|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3579999999999999999999866
No 443
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.82 E-value=0.18 Score=52.35 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=30.0
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCC--cEEEEEEecCCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQ--HVVFVMITPELD 451 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~--~vifILaTn~~~ 451 (1018)
+++++++||.- .|.......+.+.|.+... ...+|++|.+.+
T Consensus 115 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45799999975 6777777777777776533 456777777654
No 444
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.80 E-value=0.065 Score=53.79 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=25.0
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
...++|.|+.|+|||++++.+++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3579999999999999999999999754
No 445
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=93.76 E-value=0.35 Score=57.74 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=28.2
Q ss_pred HHcCCCCcEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 323 ISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 323 Ik~grl~~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
+...+.+..++|.|++|+||||+|..+|..++..
T Consensus 249 i~~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 249 IRRPPRPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred hhccCCCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 4443457889999999999999999999998753
No 446
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.74 E-value=0.24 Score=54.35 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=34.1
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccC--CcEEEEEEecCCCcchHHHhcCccE
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENIS--QHVVFVMITPELDKLPRSALSRSQK 463 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp--~~vifILaTn~~~kL~~tI~SRcq~ 463 (1018)
+++++|+||.- +|....+..++++|.+.. .+..+|+++.+.. +...+-.|+.+
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~V 214 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAV 214 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheee
Confidence 57899999975 455556666666665543 3567888888764 34455555543
No 447
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.71 E-value=0.55 Score=57.70 Aligned_cols=50 Identities=28% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 303 PNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 303 P~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+.+|+++--.......|.+++.... ..+||+||.|+||||+..++.+.++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~~~--Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHKPQ--GMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHhhC
Confidence 3467887778888888888876543 5789999999999999988888875
No 448
>PRK03839 putative kinase; Provisional
Probab=93.71 E-value=0.049 Score=56.25 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.2
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
.++|.|+||+||||+++.+|+.++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 37899999999999999999998643
No 449
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.64 E-value=0.19 Score=60.65 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=41.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 302 RPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 302 RP~tFddLVGqe~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.+..|+++--..+..+.|...+.... ..+||+||.|+||||+.+++...++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~~~--GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRRPH--GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhcCC--CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34578887767888888888886543 5789999999999999998877775
No 450
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.64 E-value=0.34 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.2
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
.++++|.||+||||+++.|+ .++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 36899999999999999999 7753
No 451
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.64 E-value=0.32 Score=50.86 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=29.1
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCC-cEEEEEEecCCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQ-HVVFVMITPELD 451 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~-~vifILaTn~~~ 451 (1018)
.++++++||.. .|.......+.+.|.+... ...+|+++.+++
T Consensus 116 ~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~ 159 (178)
T cd03239 116 PSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE 159 (178)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 45799999997 5677777777777765432 256777777654
No 452
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=93.60 E-value=0.44 Score=60.99 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHH
Q 001748 314 VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRI 348 (1018)
Q Consensus 314 ~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAra 348 (1018)
.+...|.++|..++ .+++.||+|+|||+..=.
T Consensus 5 ~~~~~i~~~l~~~~---~vIi~a~TGSGKTT~vpl 36 (819)
T TIGR01970 5 AVLPALRDALAAHP---QVVLEAPPGAGKSTAVPL 36 (819)
T ss_pred HHHHHHHHHHHcCC---cEEEECCCCCCHHHHHHH
Confidence 45667778887653 689999999999997643
No 453
>PF13245 AAA_19: Part of AAA domain
Probab=93.59 E-value=0.085 Score=47.78 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=17.0
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
+.+++.||||+|||+++..++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457779999999995554444443
No 454
>PRK13808 adenylate kinase; Provisional
Probab=93.59 E-value=0.34 Score=55.68 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=22.9
Q ss_pred EEEECCCchHHHHHHHHHHHHHhcc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
++|+||||+||||+++.|++.++..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~ 27 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV 27 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999998754
No 455
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.55 E-value=0.38 Score=51.20 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..++++|+||+|||+++..+|..+.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999998774
No 456
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.54 E-value=0.3 Score=52.94 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=56.2
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccc--eeccC-CCCcccccccccc-cchhHHHHHHHHhcCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA--LFSSG-RSRDVKEVDSVRI-NRSDRVGSLMKSAFLP 405 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~--~i~sG-~~~DvieIdaas~-~~vd~IReLie~a~~~ 405 (1018)
..++|+||.|.|||++.+.++-...-.+..-.-||.....-. .++.. ...|-..-+.+.. ....++..+++.+
T Consensus 31 ~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~--- 107 (218)
T cd03286 31 RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHA--- 107 (218)
T ss_pred cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhC---
Confidence 578999999999999999988754322211122322211000 00000 0000000000000 1123444555544
Q ss_pred CCCCCceEEEEeCcccc-CHH----HHHHHHHHHhccCCcEEEEEEecCCC
Q 001748 406 PFSSRFKIFIIDECQLL-HGE----TWATVLNSLENISQHVVFVMITPELD 451 (1018)
Q Consensus 406 P~~g~~kVLIIDEaD~L-s~~----a~naLLk~LEepp~~vifILaTn~~~ 451 (1018)
..+.+++|||...= +.. ...++++.|.+. ....+|++|...+
T Consensus 108 ---~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~-~~~~~i~~TH~~e 154 (218)
T cd03286 108 ---TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKK-VKCLTLFSTHYHS 154 (218)
T ss_pred ---CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHh-cCCcEEEEeccHH
Confidence 34679999998642 221 233445555542 2456777777654
No 457
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=93.53 E-value=0.32 Score=64.32 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHHHHHH
Q 001748 313 NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352 (1018)
Q Consensus 313 e~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAraLAka 352 (1018)
......|..+|..+. .+++.|++|+||||.+=.+..+
T Consensus 76 ~~~r~~Il~ai~~~~---VviI~GeTGSGKTTqlPq~lle 112 (1294)
T PRK11131 76 SQKKQDILEAIRDHQ---VVIVAGETGSGKTTQLPKICLE 112 (1294)
T ss_pred HHHHHHHHHHHHhCC---eEEEECCCCCCHHHHHHHHHHH
Confidence 455567777777654 6899999999999966544443
No 458
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.52 E-value=0.13 Score=62.98 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=29.7
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
+++|+|+||.- .|..+....+.+.+.+...+..+|++|.++
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 45699999985 566777777777777664555677777665
No 459
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.49 E-value=0.059 Score=55.42 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.9
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
+.++|.||+|+||||+++.+++.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 468999999999999999999988643
No 460
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.47 E-value=0.11 Score=63.17 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=30.1
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
+++|+++||.- .|.......+.+.|.+..++..+|++|.++
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~ 528 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL 528 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhh
Confidence 45799999985 567777777888887765555677777765
No 461
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.46 E-value=0.23 Score=60.07 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.0
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..+.+.||+|+||||+++.++..+.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4699999999999999999987653
No 462
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=93.45 E-value=2.7 Score=49.84 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=58.9
Q ss_pred EEEEeCccccC--------HHHHHHHHHHHhccC----CcEEEEEEecCC------C--cchHHHhcCc-----------
Q 001748 413 IFIIDECQLLH--------GETWATVLNSLENIS----QHVVFVMITPEL------D--KLPRSALSRS----------- 461 (1018)
Q Consensus 413 VLIIDEaD~Ls--------~~a~naLLk~LEepp----~~vifILaTn~~------~--kL~~tI~SRc----------- 461 (1018)
||+|||+..+- ....+.|+.++++.. +++.||++.+.. . .-.++|.+|.
T Consensus 242 lI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~~~ 321 (416)
T PF10923_consen 242 LILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDGFD 321 (416)
T ss_pred EEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccccccccc
Confidence 99999998763 235678888887632 466777765421 1 1246666653
Q ss_pred ----cEEEeCCCChhHHHHHHHHHHHH------hcCCCCHHHHHHHHHHcC
Q 001748 462 ----QKYHFPKIKDGDIASRLRRICVE------EAINFDQAALDFIAAKSN 502 (1018)
Q Consensus 462 ----q~I~F~~ls~eEI~~~L~~iakk------egI~Id~eAL~~LA~~s~ 502 (1018)
.++++.+++.+++...+.++..- ....++++.+..+++...
T Consensus 322 n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~ 372 (416)
T PF10923_consen 322 NLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVA 372 (416)
T ss_pred CccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Confidence 36788999999988876665442 124677887777765543
No 463
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=93.45 E-value=0.8 Score=48.62 Aligned_cols=59 Identities=7% Similarity=0.088 Sum_probs=34.9
Q ss_pred CCceEEEEeCcc-ccCHHHHHHHHHHHhccC----CcEEEEEEecCCCcchHHHhcCccEEEeCCC
Q 001748 409 SRFKIFIIDECQ-LLHGETWATVLNSLENIS----QHVVFVMITPELDKLPRSALSRSQKYHFPKI 469 (1018)
Q Consensus 409 g~~kVLIIDEaD-~Ls~~a~naLLk~LEepp----~~vifILaTn~~~kL~~tI~SRcq~I~F~~l 469 (1018)
.+.+++++||.. .|.......+.+.|.+.. ....+|+++.+.+.+.. + .|..++....|
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~-~-d~v~~~~~~~~ 193 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS-S-DDVKVFRMKDP 193 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccc-c-cceeEEEecCC
Confidence 467899999986 455666666666665531 23456667666654432 2 45555554433
No 464
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.43 E-value=0.34 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.7
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
...++|+||||+|||+++..+|....
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~ 48 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA 48 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988663
No 465
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.41 E-value=0.6 Score=59.54 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.3
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++|+||.+.|||++.+.++-..
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~ 351 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAA 351 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHH
Confidence 578999999999999999998654
No 466
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.41 E-value=0.062 Score=53.42 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=22.3
Q ss_pred EEEECCCchHHHHHHHHHHHHHhc
Q 001748 332 YLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
++|+|++|+|||++|+.||+.++.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999999864
No 467
>PRK06547 hypothetical protein; Provisional
Probab=93.39 E-value=0.11 Score=54.05 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=25.6
Q ss_pred CCCCcEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 326 GMVTSFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 326 grl~~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
+..+..+++.|++|+|||++|+.|++.++.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344578999999999999999999998753
No 468
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.38 E-value=0.29 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.8
Q ss_pred EEEEECCCchHHHHHHHHHHHHHh
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.+|+.|++|+|||++|..++..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 579999999999999999998764
No 469
>PRK06696 uridine kinase; Validated
Probab=93.35 E-value=0.13 Score=55.41 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHc--CCCCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 313 NVVVRSLLSAISR--GMVTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 313 e~iv~~L~~aIk~--grl~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..+++.|...+.. ...+..+.+.|++|+||||+|+.|+..++
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566777776643 33456899999999999999999999995
No 470
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.33 E-value=0.17 Score=57.87 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHh
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
..++++||+|+|||++|..++....
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998877653
No 471
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=93.33 E-value=1.1 Score=46.98 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEECCCchHHHHHHHHHHHH
Q 001748 331 FYLFHGPRGTGKTSASRIFAAA 352 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAka 352 (1018)
.++|.|.+|+|||+++..|...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 3789999999999999999754
No 472
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.31 E-value=3.1 Score=48.70 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.2
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
..+|++||.|+||||+++++...++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998853
No 473
>PRK10867 signal recognition particle protein; Provisional
Probab=93.30 E-value=0.97 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.3
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.|++|+||||++..+|..+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998774
No 474
>PRK09354 recA recombinase A; Provisional
Probab=93.28 E-value=0.28 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.0
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++++||+|+|||+++..++...
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~ 84 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEA 84 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999998887665
No 475
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=93.26 E-value=0.38 Score=49.58 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCcEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 328 VTSFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 328 l~~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
...++++.|+.|+||||++++++.+|++.
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~ 39 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLK 39 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCc
Confidence 34578999999999999999999999764
No 476
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.25 E-value=1.2 Score=46.46 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAA 352 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAka 352 (1018)
..++|.|++|+|||++.+.+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 56899999999999999988764
No 477
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.19 E-value=0.29 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.2
Q ss_pred CcEEEEECCCchHHHHHHHHHHHH
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAA 352 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAka 352 (1018)
...++|+||.|.|||++.+.++..
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH
Confidence 357999999999999999998864
No 478
>PLN02674 adenylate kinase
Probab=93.18 E-value=0.5 Score=52.12 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
..+..++|.||||+||+|.++.||+.++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~ 58 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC 58 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 334668999999999999999999998754
No 479
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.16 E-value=0.38 Score=49.76 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=29.6
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCC--cEEEEEEecCCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQ--HVVFVMITPELD 451 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~--~vifILaTn~~~ 451 (1018)
+++++|+||.- .|.......|.+.|.+... ...+|++|.+.+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45799999975 5777777777777766433 356777777654
No 480
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.16 E-value=0.19 Score=52.53 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
..++|.|++|+||||+.+++|+.|+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 35799999999999999999999974
No 481
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.12 E-value=0.054 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEECCCchHHHHHHHHHHHHHh
Q 001748 332 YLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
++|.||+|+||||+|+.+++.++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999999875
No 482
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.10 E-value=0.31 Score=67.56 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=56.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHh---cCCC
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSA---FLPP 406 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a---~~~P 406 (1018)
...++.|++|||||++.+.+.+.+.......+ + .+....-.+.-..++.... .....|..++... ...+
T Consensus 1037 ~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g-----~--~v~glApT~~Aa~~L~~~g-~~a~Ti~s~l~~~~~~~~~~ 1108 (1960)
T TIGR02760 1037 RFVAVQGLAGVGKTTMLESRYKPVLQAFESEQ-----L--QVIGLAPTHEAVGELKSAG-VQAQTLDSFLTDISLYRNSG 1108 (1960)
T ss_pred cEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcC-----C--eEEEEeChHHHHHHHHhcC-CchHhHHHHhcCcccccccC
Confidence 46799999999999999554333310000000 0 0000111111111221111 1123444444321 1112
Q ss_pred CCCCceEEEEeCccccCHHHHHHHHHHHhccCCcEEEEEEe
Q 001748 407 FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMIT 447 (1018)
Q Consensus 407 ~~g~~kVLIIDEaD~Ls~~a~naLLk~LEepp~~vifILaT 447 (1018)
......|+||||+-|+.......|++..+.... .+||+.
T Consensus 1109 ~~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~a--k~vlvG 1147 (1960)
T TIGR02760 1109 GDFRNTLFILDESSMVSNFQLTHATELVQKSGS--RAVSLG 1147 (1960)
T ss_pred CCCcccEEEEEccccccHHHHHHHHHhccCCCC--EEEEeC
Confidence 234567999999999999999999998876544 455554
No 483
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.09 E-value=0.24 Score=52.03 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=28.8
Q ss_pred HHHHHcCCCCcEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 320 LSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 320 ~~aIk~grl~~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
.+.-..+..+-.+.|+|.+|.||||+|.++.+.|..
T Consensus 14 ~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 14 EREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 333344555668999999999999999999999864
No 484
>PRK13947 shikimate kinase; Provisional
Probab=93.05 E-value=0.073 Score=54.20 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.5
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
.++|.|++|+|||++++.+|+.++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999999753
No 485
>PRK13948 shikimate kinase; Provisional
Probab=93.04 E-value=0.25 Score=52.06 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=25.4
Q ss_pred CCCcEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 327 MVTSFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 327 rl~~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
..+..++|.|.+|+||||+++.+|+.++.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34567999999999999999999999864
No 486
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=93.00 E-value=0.25 Score=60.07 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=23.7
Q ss_pred CCcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 328 VTSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 328 l~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
.+..++|+|+||+||||+|+.++...+
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g 394 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAG 394 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998754
No 487
>PRK14531 adenylate kinase; Provisional
Probab=93.00 E-value=0.085 Score=54.94 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.1
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
..++|.||||+||||+++.||+.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~ 29 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLR 29 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 358999999999999999999998754
No 488
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=92.95 E-value=0.67 Score=50.22 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=21.7
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhcc
Q 001748 331 FYLFHGPRGTGKTSASRIFAAALNCL 356 (1018)
Q Consensus 331 ayLf~GPpGTGKTtLAraLAkaL~c~ 356 (1018)
.|+|+||+|||||.+|-.+|+..+.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~p 28 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAP 28 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--E
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCC
Confidence 68999999999999999999999754
No 489
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.93 E-value=0.29 Score=51.24 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEECCCchHHHHHHHHHHHH
Q 001748 332 YLFHGPRGTGKTSASRIFAAA 352 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAka 352 (1018)
++|+||.|.|||++.+.++..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999999843
No 490
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.93 E-value=1.2 Score=53.03 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.3
Q ss_pred CcEEEEECCCchHHHHHHHHHHHHHh
Q 001748 329 TSFYLFHGPRGTGKTSASRIFAAALN 354 (1018)
Q Consensus 329 ~~ayLf~GPpGTGKTtLAraLAkaL~ 354 (1018)
+..++|.|++|+||||++..+|..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998863
No 491
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=92.92 E-value=0.63 Score=46.58 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=18.8
Q ss_pred cEEEEECCCchHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAA 352 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAka 352 (1018)
+.+++.||.|+|||..+...+-.
T Consensus 15 ~~~li~aptGsGKT~~~~~~~l~ 37 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPALN 37 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCccHHHHHHHHHh
Confidence 45899999999999998855543
No 492
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.89 E-value=0.085 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.4
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhc
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNC 355 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c 355 (1018)
..++|.|++|+||||+|+.|++.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 47999999999999999999998753
No 493
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.89 E-value=0.091 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.6
Q ss_pred EEEECCCchHHHHHHHHHHHHH
Q 001748 332 YLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 332 yLf~GPpGTGKTtLAraLAkaL 353 (1018)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 494
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=92.87 E-value=0.8 Score=58.63 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEECCCchHHHHHHHH
Q 001748 313 NVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRI 348 (1018)
Q Consensus 313 e~iv~~L~~aIk~grl~~ayLf~GPpGTGKTtLAra 348 (1018)
..+...|.++|.+++ .+++.||+|+|||+..=.
T Consensus 7 ~~~~~~i~~~l~~~~---~vvv~A~TGSGKTt~~pl 39 (812)
T PRK11664 7 AAVLPELLTALKTAP---QVLLKAPTGAGKSTWLPL 39 (812)
T ss_pred HHHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHHH
Confidence 456677888887664 589999999999997743
No 495
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=92.87 E-value=0.51 Score=50.19 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=28.9
Q ss_pred ceEEEEeCccc-cCHHHHHHHHHHHhccCCcEEEEEEecCC
Q 001748 411 FKIFIIDECQL-LHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 411 ~kVLIIDEaD~-Ls~~a~naLLk~LEepp~~vifILaTn~~ 450 (1018)
..++|+||++. |.......|.++|.+.....-||++|..+
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~ 199 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNP 199 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-H
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 45999999985 66667788888888887777788877653
No 496
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.86 E-value=0.42 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++|+||+|+|||+++..|+...
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHh
Confidence 568999999999999999998654
No 497
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=92.85 E-value=0.16 Score=55.02 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=30.8
Q ss_pred CceEEEEeCcc-ccCHHHHHHHHHHHhccCC--cEEEEEEecCCC
Q 001748 410 RFKIFIIDECQ-LLHGETWATVLNSLENISQ--HVVFVMITPELD 451 (1018)
Q Consensus 410 ~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~--~vifILaTn~~~ 451 (1018)
+++++++||.- .|.....+.+++.|.+... ...+|++|.+.+
T Consensus 148 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 148 EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 56799999985 5777888888888876533 456777777654
No 498
>PLN02772 guanylate kinase
Probab=92.83 E-value=0.64 Score=54.52 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.6
Q ss_pred cEEEEECCCchHHHHHHHHHHHHH
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAAL 353 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL 353 (1018)
..++|.||+|+||+++++.|.+..
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhc
Confidence 579999999999999999998764
No 499
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.82 E-value=0.39 Score=49.46 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=29.8
Q ss_pred CCceEEEEeCcc-ccCHHHHHHHHHHHhccCC-cEEEEEEecCCC
Q 001748 409 SRFKIFIIDECQ-LLHGETWATVLNSLENISQ-HVVFVMITPELD 451 (1018)
Q Consensus 409 g~~kVLIIDEaD-~Ls~~a~naLLk~LEepp~-~vifILaTn~~~ 451 (1018)
.+++|+++||.- .|.......+++.|++... ...+|++|.+.+
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 345799999975 5667777777777776532 355777777654
No 500
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.81 E-value=0.29 Score=54.46 Aligned_cols=122 Identities=22% Similarity=0.318 Sum_probs=65.1
Q ss_pred cEEEEECCCchHHHHHHHHHHHHHhccCCCCCCCCCCccccceeccCCCCcccccccccccchhHHHHHHHHhcCC----
Q 001748 330 SFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP---- 405 (1018)
Q Consensus 330 ~ayLf~GPpGTGKTtLAraLAkaL~c~~~~~~~PCg~C~sc~~i~sG~~~DvieIdaas~~~vd~IReLie~a~~~---- 405 (1018)
..+-+.|++|+||||++|.+.+.+.... + ..++.|.. +..+. .....+.+.++++.+...
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~---G---------~i~f~g~~--i~~~~--~~~~~~~v~elL~~Vgl~~~~~ 103 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTS---G---------EILFEGKD--ITKLS--KEERRERVLELLEKVGLPEEFL 103 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCC---c---------eEEEcCcc--hhhcc--hhHHHHHHHHHHHHhCCCHHHh
Confidence 3578999999999999999987654211 1 12223321 11111 111123455555543311
Q ss_pred ---CC--C--------------CCceEEEEeCcccc-CHHHHHHHHHHHhccC--CcEEEEEEecCCCcchHHHhcCccE
Q 001748 406 ---PF--S--------------SRFKIFIIDECQLL-HGETWATVLNSLENIS--QHVVFVMITPELDKLPRSALSRSQK 463 (1018)
Q Consensus 406 ---P~--~--------------g~~kVLIIDEaD~L-s~~a~naLLk~LEepp--~~vifILaTn~~~kL~~tI~SRcq~ 463 (1018)
|. . -+++++|.||.-.+ ....+..++++|.+.. ....+++++.+.. +...+-.|..+
T Consensus 104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~V 182 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAV 182 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEE
Confidence 11 1 14679999998754 4445555555554432 2456777777654 23344445554
Q ss_pred EEeCC
Q 001748 464 YHFPK 468 (1018)
Q Consensus 464 I~F~~ 468 (1018)
.....
T Consensus 183 My~G~ 187 (268)
T COG4608 183 MYLGK 187 (268)
T ss_pred EecCc
Confidence 44443
Done!