Query 001748
Match_columns 1018
No_of_seqs 433 out of 2985
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 16:08:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001748.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1046-1050//hhsearch_pdb/001748hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jr3_A DNA polymerase III subu 1.0 1 1 369.0 41.4 355 293-647 2-361 (373)
2 1a5t_A Delta prime, HOLB; zinc 1.0 1 1 328.9 26.4 311 310-645 5-322 (334)
3 1sxj_C Activator 1 40 kDa subu 1.0 1 1 327.3 32.4 312 293-646 11-331 (340)
4 2chq_A Replication factor C sm 1.0 1 1 316.4 29.4 312 293-646 3-317 (319)
5 1iqp_A RFCS; clamp loader, ext 1.0 1 1 309.6 31.8 311 293-645 11-324 (327)
6 1sxj_E Activator 1 40 kDa subu 1.0 1 1 308.2 26.6 322 296-644 3-351 (354)
7 1jr3_D DNA polymerase III, del 1.0 1 1 303.4 25.0 306 317-646 7-335 (343)
8 1sxj_D Activator 1 41 kDa subu 1.0 1 1 300.7 28.4 313 292-644 22-352 (353)
9 3u61_B DNA polymerase accessor 1.0 1 1 300.7 28.5 300 291-644 10-319 (324)
10 1sxj_B Activator 1 37 kDa subu 1.0 1 1 297.7 30.8 310 293-646 7-320 (323)
No 1
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=1.00 E-value=1 Score=369.02 Aligned_cols=355 Identities=26% Similarity=0.428 Sum_probs=329.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 87332122587886634692999999999998199983799997882179999999999970258888998887542101
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFdDIVGqe~ii~~Lk~aI~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~~~~PCg~C~sC~~ 372 (1018)
.+.+|++||||.+|++++|++++++.|.+++..++.+|+|||+||+|+|||++|+++++.++|.......||+.|..|..
T Consensus 2 ~~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp -CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CCHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 73777886388854540580999999999998299982799889999779999999999967878888887756377999
Q ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 03688775100000014313689999998059998898369999186422799999999997412886899999459886
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDK 452 (1018)
Q Consensus 373 i~sG~s~dviEIdaas~~~vd~IReLie~a~~~P~~g~~KVIIIDEid~Ls~~a~nALLktLEEpp~~viiILaTt~~~k 452 (1018)
+..+.++++.++++....+++.++++++.+...|..++++|+||||+|.++..++++|++++++++.+++||++|+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHH
T ss_conf 86258885687255445778899999999852522488379999782121699999999998608985699998699576
Q ss_pred CHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCCHHHHHHHH
Q ss_conf 607884074089917999468999999999982698879999999999179999999999999960-8756799999985
Q 001748 453 LPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELI 531 (1018)
Q Consensus 453 Ll~tI~SRcq~I~F~~ls~eeI~~~L~~ia~kEgi~Id~eAL~~LA~~s~GnlR~AlnlLekl~l~-~~~IT~edV~ell 531 (1018)
+++++.+||+.+.|.+++.+++..+|..++.++|+.++++++..|++.++|++|.+.++++++..+ ++.||.++|.+++
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHHHT
T ss_pred CCHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 76788733047658897999999999999987599978999999999779999999999999997447865499999986
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCC
Q ss_conf 34884689999999981992999999999998299999999999999999994011365----14899999986520179
Q 001748 532 GIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED----CSEARKNFFGKHTSEAD 607 (1018)
Q Consensus 532 G~v~ee~l~~Lldail~~d~~~aL~~l~eLl~~G~dpl~IL~~L~~~lrdLL~~k~~~~----~~e~~~~~l~k~a~~~s 607 (1018)
+....+.++++++++..++...++..+.++...|.++..++..|..++++++..+.... ........+.+++++++
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 321 (373)
T 1jr3_A 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIP 321 (373)
T ss_dssp TCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 78889999999999976899999999999987086899999999999999999761474111246658999999998589
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999999983178959999999998105998
Q 001748 608 MQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSES 647 (1018)
Q Consensus 608 ~~~L~~aL~iLsEaE~qLK~s~n~rl~LE~~LLkL~~~~~ 647 (1018)
...|.+++..+.+++.++|.+.++++.+|.++++++...+
T Consensus 322 ~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~~~ 361 (373)
T 1jr3_A 322 PTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHP 361 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999987189933999999999984589
No 2
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=1.00 E-value=1 Score=328.87 Aligned_cols=311 Identities=18% Similarity=0.169 Sum_probs=262.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC--
Q ss_conf 692999999999998199983799997882179999999999970258888998887542101036887751000000--
Q 001748 310 VGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSV-- 387 (1018)
Q Consensus 310 VGqe~ii~~Lk~aI~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~~~~PCg~C~sC~~i~sG~s~dviEIdaa-- 387 (1018)
.-|+.+.+.|.++++.++++|+|||+||+|+|||++|+++|+.++|.......|||.|..|..+..+.++|+.++++.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCC
T ss_conf 74299999999999759966158777899823999999999998088988999998998899986599998799735656
Q ss_pred -CCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCCCEEEE
Q ss_conf -1431368999999805999889836999918642279999999999741288689999945988660788407408991
Q 001748 388 -RINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHF 466 (1018)
Q Consensus 388 -s~~~vd~IReLie~a~~~P~~g~~KVIIIDEid~Ls~~a~nALLktLEEpp~~viiILaTt~~~kLl~tI~SRcq~I~F 466 (1018)
...+++.+|++++.+...|..++++|+||||+|.|+.+++|+|+++||+|+.+++||++|+++++++++|+|||+++.|
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~ 164 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYL 164 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHHHCCEEEEC
T ss_conf 78889999999999985264368957999776344499999999987237988828999859947583787622266658
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 79994689999999999826988799999999991799999999999999608756799999985348846899999999
Q 001748 467 PKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELLDLLDLA 546 (1018)
Q Consensus 467 ~~ls~eeI~~~L~~ia~kEgi~Id~eAL~~LA~~s~GnlR~AlnlLekl~l~~~~IT~edV~ellG~v~ee~l~~Lldai 546 (1018)
.+++.+++..||..++ .++++++..+++.++|++|.+++++++.......++.+.+..+++
T Consensus 165 ~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~-------------- 225 (334)
T 1a5t_A 165 APPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVP-------------- 225 (334)
T ss_dssp CCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHH--------------
T ss_pred CCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------------
T ss_conf 9989999999999853-----899999999999809999999998652359999999999999983--------------
Q ss_pred HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 81992999999999998299999999999999999994011365--1489999998652017999999999999999999
Q 001748 547 LSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED--CSEARKNFFGKHTSEADMQKLSRALKILSETEKQ 624 (1018)
Q Consensus 547 l~~d~~~aL~~l~eLl~~G~dpl~IL~~L~~~lrdLL~~k~~~~--~~e~~~~~l~k~a~~~s~~~L~~aL~iLsEaE~q 624 (1018)
..+....+ ..+ .+.++..++..|..++|+++..+.... ........+.+++++++...+.++++.+.+++.+
T Consensus 226 -~~~~~~~~---~~l--~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~ 299 (334)
T 1a5t_A 226 -SGDWYSLL---AAL--NHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQ 299 (334)
T ss_dssp -HCCCGGGH---HHH--CSTTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHH---HHH--HCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf -74799999---998--325699999999999999999633874225977999999999748999999999999999999
Q ss_pred HH--CCCCHHHHHHHHHHHHCCC
Q ss_conf 83--1789599999999981059
Q 001748 625 LR--MSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 625 LK--~s~n~rl~LE~~LLkL~~~ 645 (1018)
++ .+.|+++.+|.++++++..
T Consensus 300 l~~~~~~n~~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 300 LMSVTGINRELLITDLLLRIEHY 322 (334)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 87358999999999999999986
No 3
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=327.27 Aligned_cols=312 Identities=21% Similarity=0.302 Sum_probs=278.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 87332122587886634692999999999998199983799997882179999999999970258888998887542101
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFdDIVGqe~ii~~Lk~aI~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~~~~PCg~C~sC~~ 372 (1018)
...||++||||.+|++++||+++++.|..++..++++| |||+||+|+|||++|+++|+.+.|...
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~-------------- 75 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNY-------------- 75 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSH--------------
T ss_pred CCCCHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC--------------
T ss_conf 67743887299859884095999999999996699866-999899998899999999998738776--------------
Q ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 0368877510000001431368999999805--99988983699991864227999999999974128868999994598
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAF--LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 373 i~sG~s~dviEIdaas~~~vd~IReLie~a~--~~P~~g~~KVIIIDEid~Ls~~a~nALLktLEEpp~~viiILaTt~~ 450 (1018)
...+.++++....+++.+++++..+. ..++.++++|+||||+|.|+..++++|++++|+|+.+++||++++.+
T Consensus 76 -----~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 76 -----SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp -----HHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf -----660799737565558999999999986145678885399995788778999999999874679982799982571
Q ss_pred CCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-----CCCHH
Q ss_conf 8660788407408991799946899999999998269887999999999917999999999999996087-----56799
Q 001748 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-----KITLS 525 (1018)
Q Consensus 451 ~kLl~tI~SRcq~I~F~~ls~eeI~~~L~~ia~kEgi~Id~eAL~~LA~~s~GnlR~AlnlLekl~l~~~-----~IT~e 525 (1018)
.+++++|+|||+.+.|.+++.+++..++..++.++++.++++++..++..++|++|.++++|+.+..... .||.+
T Consensus 151 ~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~ 230 (340)
T 1sxj_C 151 HKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDD 230 (340)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHH
T ss_pred CCCCHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 22444677434057615989999999999999984999899999999998699899999999999984687666644699
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99998534884689999999981992999999999998-29999999999999999999401136514899999986520
Q 001748 526 LAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMR-SKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTS 604 (1018)
Q Consensus 526 dV~ellG~v~ee~l~~Lldail~~d~~~aL~~l~eLl~-~G~dpl~IL~~L~~~lrdLL~~k~~~~~~e~~~~~l~k~a~ 604 (1018)
+|.++++....+.++++++++..+|...++..+.+++. .|.++..++..|..+++.+
T Consensus 231 ~v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~---------------------- 288 (340)
T 1sxj_C 231 VIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY---------------------- 288 (340)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS----------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC----------------------
T ss_conf 9999968999999999999998589999999999999976999999999999999864----------------------
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 179-999999999999999998317895999999999810599
Q 001748 605 EAD-MQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 605 ~~s-~~~L~~aL~iLsEaE~qLK~s~n~rl~LE~~LLkL~~~~ 646 (1018)
.++ ...+.+++..+.+++.+++.+.++++.||.++++++...
T Consensus 289 ~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~~~ 331 (340)
T 1sxj_C 289 ELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASF 331 (340)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6993899999999999999998847986999999999999986
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=1.00 E-value=1 Score=316.43 Aligned_cols=312 Identities=22% Similarity=0.323 Sum_probs=274.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 87332122587886634692999999999998199983799997882179999999999970258888998887542101
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFdDIVGqe~ii~~Lk~aI~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~~~~PCg~C~sC~~ 372 (1018)
...||.+||||.+|++++|++.+++.|.+++..++.++ |||+||+|+|||++|+++++.+.+...
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------- 67 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENW-------------- 67 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCH--------------
T ss_pred CCCCHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC--------------
T ss_conf 64418771099989997687999999999996799976-998891996799999999998549755--------------
Q ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCC-CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 0368877510000001431368999999805-99988-983699991864227999999999974128868999994598
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFS-SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 373 i~sG~s~dviEIdaas~~~vd~IReLie~a~-~~P~~-g~~KVIIIDEid~Ls~~a~nALLktLEEpp~~viiILaTt~~ 450 (1018)
...+.+++.....+.+.+++++.... ..+.. +.++|+||||+|.++..++++|++++++++.+++||++++.+
T Consensus 68 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 68 -----RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp -----HHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred -----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf -----687699857555672799999999985378888886389986888679999999999998268787289985873
Q ss_pred CCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 86607884074089917999468999999999982698879999999999179999999999999960875679999998
Q 001748 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530 (1018)
Q Consensus 451 ~kLl~tI~SRcq~I~F~~ls~eeI~~~L~~ia~kEgi~Id~eAL~~LA~~s~GnlR~AlnlLekl~l~~~~IT~edV~el 530 (1018)
.++++++.+||+.+.|.+++.+++..+|..++.++++.++++++..|+..++|++|.+.++++++...++.||.++|.++
T Consensus 143 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~ 222 (319)
T 2chq_A 143 SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQI 222 (319)
T ss_dssp GGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHH
T ss_pred HHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 23446788317477825989999999999999975999899999999998699889999999999975898789999999
Q ss_pred HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 534884689999999981992999999999998-2999999999999999999940113651489999998652017999
Q 001748 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELMR-SKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQ 609 (1018)
Q Consensus 531 lG~v~ee~l~~Lldail~~d~~~aL~~l~eLl~-~G~dpl~IL~~L~~~lrdLL~~k~~~~~~e~~~~~l~k~a~~~s~~ 609 (1018)
++......++++++++..++...++..+.+++. .|.++..++..+..+++.+ .++..
T Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l----------------------~~~~~ 280 (319)
T 2chq_A 223 TATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM----------------------PIKDS 280 (319)
T ss_dssp TTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS----------------------CSCTT
T ss_pred HCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC----------------------CCCHH
T ss_conf 78999899999999998089999999999999974999999999999999864----------------------69989
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999998317895999999999810599
Q 001748 610 KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 610 ~L~~aL~iLsEaE~qLK~s~n~rl~LE~~LLkL~~~~ 646 (1018)
.+.+++..+.+++.++|.+.++.+.+|.++++++...
T Consensus 281 ~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~ 317 (319)
T 2chq_A 281 LKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTLA 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999856987999999999999753
No 5
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=309.57 Aligned_cols=311 Identities=23% Similarity=0.328 Sum_probs=273.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 87332122587886634692999999999998199983799997882179999999999970258888998887542101
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFdDIVGqe~ii~~Lk~aI~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~~~~PCg~C~sC~~ 372 (1018)
...||.+||||.+|++++|++++++.|..++..++.++ +||+||+|+|||++|+++++.+++...
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~~~~~-------------- 75 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENW-------------- 75 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGGH--------------
T ss_pred CCCCHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC--------------
T ss_conf 67734351588989996387999999999997499973-998896999899999999998468755--------------
Q ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCC-CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 036887751000000143136899999980-599988-983699991864227999999999974128868999994598
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSA-FLPPFS-SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPEL 450 (1018)
Q Consensus 373 i~sG~s~dviEIdaas~~~vd~IReLie~a-~~~P~~-g~~KVIIIDEid~Ls~~a~nALLktLEEpp~~viiILaTt~~ 450 (1018)
...+.++++....+.+.+++.+... ...|.. ++++|+||||+|.++..++++|++++++++.+++||++++.+
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 76 -----RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp -----HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf -----686699616344766899999999986077678997399996887679999999999987068787499996770
Q ss_pred CCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 86607884074089917999468999999999982698879999999999179999999999999960875679999998
Q 001748 451 DKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYEL 530 (1018)
Q Consensus 451 ~kLl~tI~SRcq~I~F~~ls~eeI~~~L~~ia~kEgi~Id~eAL~~LA~~s~GnlR~AlnlLekl~l~~~~IT~edV~el 530 (1018)
.++++++.+||..+.|.+++.+++..++..++.++++.++++++..|+..++|++|.+.++++.+......||.++|.++
T Consensus 151 ~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~ 230 (327)
T 1iqp_A 151 SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 230 (327)
T ss_dssp GGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 00677789647078826999999999999999966999998999999997799889999999999864898789999999
Q ss_pred HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 53488468999999998199299999999999-82999999999999999999940113651489999998652017999
Q 001748 531 IGIVSDDELLDLLDLALSSDTSNTVIRARELM-RSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQ 609 (1018)
Q Consensus 531 lG~v~ee~l~~Lldail~~d~~~aL~~l~eLl-~~G~dpl~IL~~L~~~lrdLL~~k~~~~~~e~~~~~l~k~a~~~s~~ 609 (1018)
++...+++++++++++..++...++..+++++ ..|.++..++..|..+++. ..++..
T Consensus 231 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~----------------------~~~~~~ 288 (327)
T 1iqp_A 231 ASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFN----------------------LPIEEP 288 (327)
T ss_dssp TTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGG----------------------SSSCHH
T ss_pred HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----------------------CCCCHH
T ss_conf 7899989999999999818999999999999997699999999999999986----------------------369989
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 999999999999999831789599999999981059
Q 001748 610 KLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSS 645 (1018)
Q Consensus 610 ~L~~aL~iLsEaE~qLK~s~n~rl~LE~~LLkL~~~ 645 (1018)
.+.+++..+.+++.++|.+.++.+.||.++++++..
T Consensus 289 ~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~ 324 (327)
T 1iqp_A 289 KKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLI 324 (327)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999986598799999999999975
No 6
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=308.22 Aligned_cols=322 Identities=18% Similarity=0.240 Sum_probs=262.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCC--------CCCCCCC
Q ss_conf 3212258788663469299999999999-819998379999788217999999999997025888--------8998887
Q 001748 296 SLSQKFRPNFFDELVGQNVVVRSLLSAI-SRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE--------DQKPCGL 366 (1018)
Q Consensus 296 ~L~eKyRP~tFdDIVGqe~ii~~Lk~aI-~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~--------~~~PCg~ 366 (1018)
+|++||||++|++++||+.+++.|.+++ ..++.+| |+|+||+|+|||++++++++.+.+.... ...||+.
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CCHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCC
T ss_conf 411222889788722779999999999851799885-9988979999999999999997399878277625110046654
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCH--HHHHHHHHHHC-CCCC---------CCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 54210103688775100000014313--68999999805-9998---------898369999186422799999999997
Q 001748 367 CRECALFSSGRSRDVKEVDSVRINRS--DRVGSLMKSAF-LPPF---------SSRFKIFIIDECQLLHGETWATVLNSL 434 (1018)
Q Consensus 367 C~sC~~i~sG~s~dviEIdaas~~~v--d~IReLie~a~-~~P~---------~g~~KVIIIDEid~Ls~~a~nALLktL 434 (1018)
|..|..+.... +.++++...... ..++++++.+. ..+. .++++|+||||++.|+..++++|+++|
T Consensus 82 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 82 KLELNVVSSPY---HLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp ----CCEECSS---EEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCC---EEEECHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 30235642564---698437653875358999999999974456642234566789728999684416999999999999
Q ss_pred HCCCCCEEEEEEECCCCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 41288689999945988660788407408991799946899999999998269887-99999999991799999999999
Q 001748 435 ENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFD-QAALDFIAAKSNGSIRDAEMLLD 513 (1018)
Q Consensus 435 EEpp~~viiILaTt~~~kLl~tI~SRcq~I~F~~ls~eeI~~~L~~ia~kEgi~Id-~eAL~~LA~~s~GnlR~AlnlLe 513 (1018)
++++.++.||++|+++.+++++|+|||+++.|.+++.+++..+|..++.++++.++ ++++..|++.++|++|.++++|+
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 96168977999848778878999844017766896999999999999998099989299999999976998999999999
Q ss_pred HHHHHCC-CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9996087-567999999853488468999999998199299999999----99982999999999999999999940113
Q 001748 514 QLSLLGK-KITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRAR----ELMRSKIDPMQLISQLANLIMDILAGKCL 588 (1018)
Q Consensus 514 kl~l~~~-~IT~edV~ellG~v~ee~l~~Lldail~~d~~~aL~~l~----eLl~~G~dpl~IL~~L~~~lrdLL~~k~~ 588 (1018)
++..... .||.+++ +.....++.++++++++..++....+..+. +++..|.++..++..|..++.
T Consensus 239 ~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~-------- 308 (354)
T 1sxj_E 239 SMALNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLL-------- 308 (354)
T ss_dssp HHHHTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTT--------
T ss_pred HHHHHCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------
T ss_conf 999857898586768--7896699999999999997306567999999999999909899999999999997--------
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 65148999999865201799999999999999999983178959999999998105
Q 001748 589 EDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644 (1018)
Q Consensus 589 ~~~~e~~~~~l~k~a~~~s~~~L~~aL~iLsEaE~qLK~s~n~rl~LE~~LLkL~~ 644 (1018)
...+++...+.+++..+.+++.++|.+.++++.||.+++++|.
T Consensus 309 -------------~~~~~~~~~l~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~ 351 (354)
T 1sxj_E 309 -------------DVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMC 351 (354)
T ss_dssp -------------TCTTSCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred -------------HCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf -------------3158999999999999999988875699879999999999999
No 7
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=1.00 E-value=1 Score=303.36 Aligned_cols=306 Identities=13% Similarity=0.133 Sum_probs=268.6
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999998199983799997882179999999999970258888998887542101036887751000000143136899
Q 001748 317 RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVG 396 (1018)
Q Consensus 317 ~~Lk~aI~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~~~~PCg~C~sC~~i~sG~s~dviEIdaas~~~vd~IR 396 (1018)
+.|.+.++ ++++|+|||+||+|+||++.++.|++.+.|.... + | .++++++ ..+++
T Consensus 7 ~~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~---~------~---------~~~~~~~-----~~~~~ 62 (343)
T 1jr3_D 7 EQLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE---E------H---------HTFSIDP-----NTDWN 62 (343)
T ss_dssp TTHHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC---E------E---------EEEECCT-----TCCHH
T ss_pred HHHHHHHH-CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC---E------E---------EEEEECC-----CCCHH
T ss_conf 99999984-6788279997793899999999999999867987---1------5---------7887338-----99999
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEEECCC------CCCHHHHHCCCCEEEECCC
Q ss_conf 9999805999889836999918642-27999999999974128868999994598------8660788407408991799
Q 001748 397 SLMKSAFLPPFSSRFKIFIIDECQL-LHGETWATVLNSLENISQHVVFVMITPEL------DKLPRSALSRSQKYHFPKI 469 (1018)
Q Consensus 397 eLie~a~~~P~~g~~KVIIIDEid~-Ls~~a~nALLktLEEpp~~viiILaTt~~------~kLl~tI~SRcq~I~F~~l 469 (1018)
++++.+.+.|++++++||||||+|+ ++.+++++|++++|+||++++||++++++ .+++++|.|||+++.|.++
T Consensus 63 ~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 63 AIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp HHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred HHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 99998618687668868999899999885899999999836999869999718778566743999999847438995388
Q ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9468999999999982698879999999999179999999999999960--87567999999853488468999999998
Q 001748 470 KDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYELIGIVSDDELLDLLDLAL 547 (1018)
Q Consensus 470 s~eeI~~~L~~ia~kEgi~Id~eAL~~LA~~s~GnlR~AlnlLekl~l~--~~~IT~edV~ellG~v~ee~l~~Lldail 547 (1018)
+..++..||..+++++|+.++++++.+|+..++||+|.+.++|++++++ ++.||.++|.++++...+..+|++++++.
T Consensus 143 ~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~ 222 (343)
T 1jr3_D 143 EQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALL 222 (343)
T ss_dssp CTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98999999999999859999999999999985538999999999999855999889999999875065089999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCH---HH---------HHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 19929999999999982999999999999999999940113651---48---------9999998652017999999999
Q 001748 548 SSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDC---SE---------ARKNFFGKHTSEADMQKLSRAL 615 (1018)
Q Consensus 548 ~~d~~~aL~~l~eLl~~G~dpl~IL~~L~~~lrdLL~~k~~~~~---~e---------~~~~~l~k~a~~~s~~~L~~aL 615 (1018)
.+|...++..+++++..|.+|..++..|.+++|+++.++..... .. .....+.+++++|+.++|.+++
T Consensus 223 ~~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l 302 (343)
T 1jr3_D 223 MGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAV 302 (343)
T ss_dssp TSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 79999999999999977996899999999999999999998867999999988499888999999999759999999999
Q ss_pred HHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCC
Q ss_conf 99999999983178--95999999999810599
Q 001748 616 KILSETEKQLRMSK--HQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 616 ~iLsEaE~qLK~s~--n~rl~LE~~LLkL~~~~ 646 (1018)
..+.+++.++|++. ++++.||.+++++|...
T Consensus 303 ~~l~~~d~~lK~~~~~~~~~~le~l~l~l~~~~ 335 (343)
T 1jr3_D 303 QLLTRTELTLKQDYGQSVWAELEGLSLLLCHKP 335 (343)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999999999828998988999999999980899
No 8
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=300.74 Aligned_cols=313 Identities=22% Similarity=0.291 Sum_probs=267.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 88733212258788663469299999999999819998379999788217999999999997025888899888754210
Q 001748 292 ETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371 (1018)
Q Consensus 292 e~~~~L~eKyRP~tFdDIVGqe~ii~~Lk~aI~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~~~~PCg~C~sC~ 371 (1018)
....||.+||||.+|++++|++++++.|..++..++.++ +||+||+|+|||++|+++++.+++....
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l~~~~~~------------ 88 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDLM------------ 88 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHHHHHHHH------------
T ss_pred CCCCCHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCC------------
T ss_conf 367537774299989984488999999999996399987-9998999988999999999983798555------------
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-C-----------CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 1036887751000000143136899999980599-9-----------889836999918642279999999999741288
Q 001748 372 LFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLP-P-----------FSSRFKIFIIDECQLLHGETWATVLNSLENISQ 439 (1018)
Q Consensus 372 ~i~sG~s~dviEIdaas~~~vd~IReLie~a~~~-P-----------~~g~~KVIIIDEid~Ls~~a~nALLktLEEpp~ 439 (1018)
...+.++++....+.+.+++.+...... . ..+.++|+||||+|.++...+++|++++++++.
T Consensus 89 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 89 ------KSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSG 162 (353)
T ss_dssp ------TTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTT
T ss_pred ------CCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf ------66558876423454589999999986412222100000247788825999979875699999999999973689
Q ss_pred CEEEEEEECCCCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-
Q ss_conf 6899999459886607884074089917999468999999999982698879999999999179999999999999960-
Q 001748 440 HVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL- 518 (1018)
Q Consensus 440 ~viiILaTt~~~kLl~tI~SRcq~I~F~~ls~eeI~~~L~~ia~kEgi~Id~eAL~~LA~~s~GnlR~AlnlLekl~l~- 518 (1018)
.+.||++++.+.++++++.+||..+.|.+++.+++..++..++.++++.++++++.+|++.++|++|.++++++.+..+
T Consensus 163 ~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~ 242 (353)
T 1sxj_D 163 VTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGA 242 (353)
T ss_dssp TEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHH
T ss_pred CCEEEEEECCHHHCCCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 85699986852317620330473488479999999999999999808899999999999976998999999999999846
Q ss_pred CC-----CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87-----5679999998534884689999999981992999999999998299999999999999999994011365148
Q 001748 519 GK-----KITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSE 593 (1018)
Q Consensus 519 ~~-----~IT~edV~ellG~v~ee~l~~Lldail~~d~~~aL~~l~eLl~~G~dpl~IL~~L~~~lrdLL~~k~~~~~~e 593 (1018)
++ .||.++|.++++....+.++++++++..++...++..+++++..|.++..++..+...++
T Consensus 243 ~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~------------- 309 (353)
T 1sxj_D 243 QYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYI------------- 309 (353)
T ss_dssp HHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHH-------------
T ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------
T ss_conf 8876676336999999858999999999999985378999999999999829899999999999998-------------
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 999999865201799999999999999999983178959999999998105
Q 001748 594 ARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644 (1018)
Q Consensus 594 ~~~~~l~k~a~~~s~~~L~~aL~iLsEaE~qLK~s~n~rl~LE~~LLkL~~ 644 (1018)
.+..++...+.+++..+.+++.+++.+.+++++||.++++++.
T Consensus 310 --------~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~~ 352 (353)
T 1sxj_D 310 --------TNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 352 (353)
T ss_dssp --------HCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred --------HHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf --------7246998999999999999999998678868999999999974
No 9
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=1.00 E-value=1 Score=300.70 Aligned_cols=300 Identities=22% Similarity=0.277 Sum_probs=261.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 78873321225878866346929999999999981999837999978821799999999999702588889988875421
Q 001748 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCREC 370 (1018)
Q Consensus 291 ~e~~~~L~eKyRP~tFdDIVGqe~ii~~Lk~aI~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~~~~PCg~C~sC 370 (1018)
.....+|++||||.+|++++|+++++..|.+++..++.++.|||+||+|+|||++|+++++.+++
T Consensus 10 ~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~--------------- 74 (324)
T 3u61_B 10 NEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA--------------- 74 (324)
T ss_dssp CTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE---------------
T ss_pred CCCCCHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC---------------
T ss_conf 86614288866899899970869999999999976998807984096999899999999998499---------------
Q ss_pred CEECCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCCCCCCCEEEEEECCCCCC-HHHHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 0103688775100000014313689999998-0599988983699991864227-9999999999741288689999945
Q 001748 371 ALFSSGRSRDVKEVDSVRINRSDRVGSLMKS-AFLPPFSSRFKIFIIDECQLLH-GETWATVLNSLENISQHVVFVMITP 448 (1018)
Q Consensus 371 ~~i~sG~s~dviEIdaas~~~vd~IReLie~-a~~~P~~g~~KVIIIDEid~Ls-~~a~nALLktLEEpp~~viiILaTt 448 (1018)
++.++++... +.+.+++++.. +...+..+.++|+||||+|.++ .+++++|++++++++.++.||++|+
T Consensus 75 ---------~~~~i~~~~~-~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 75 ---------DMMFVNGSDC-KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp ---------EEEEEETTTC-CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred ---------CEEEECCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf ---------8799716446-789999999999850464789828999897655868899999999983799857999868
Q ss_pred CCCCCHHHHHCCCCEEEECCCCHHH-------HHHHHHHHHHHHCCCCCH-HHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9886607884074089917999468-------999999999982698879-99999999917999999999999996087
Q 001748 449 ELDKLPRSALSRSQKYHFPKIKDGD-------IASRLRRICVEEAINFDQ-AALDFIAAKSNGSIRDAEMLLDQLSLLGK 520 (1018)
Q Consensus 449 ~~~kLl~tI~SRcq~I~F~~ls~ee-------I~~~L~~ia~kEgi~Id~-eAL~~LA~~s~GnlR~AlnlLekl~l~~~ 520 (1018)
.+.+++++|.|||..+.|.+++.++ +..++..++.++++.+++ +++..|++.++||+|.+++.|++++ .++
T Consensus 145 ~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~ 223 (324)
T 3u61_B 145 NIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKG 223 (324)
T ss_dssp SGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGT
T ss_pred CCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-CCC
T ss_conf 8110688899608088848989789988899999999999997699789599999999867997999999999986-369
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 56799999985348846899999999819929999999999982999999999999999999940113651489999998
Q 001748 521 KITLSLAYELIGIVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFG 600 (1018)
Q Consensus 521 ~IT~edV~ellG~v~ee~l~~Lldail~~d~~~aL~~l~eLl~~G~dpl~IL~~L~~~lrdLL~~k~~~~~~e~~~~~l~ 600 (1018)
.||.++|.++++. .+.++++++++..++...++..+.+++. +|..++.+|...+.
T Consensus 224 ~i~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~-------------------- 278 (324)
T 3u61_B 224 VLDAGILSLVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIY-------------------- 278 (324)
T ss_dssp CBCC--------------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHH--------------------
T ss_pred CCCHHHHHHHHCC--HHHHHHHHHHHHCCCHHHHHHHHHHHCC---CHHHHHHHHHHHHH--------------------
T ss_conf 9899999998578--8999999999973999999999998615---99999999999998--------------------
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 65201799999999999999999983178959999999998105
Q 001748 601 KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSS 644 (1018)
Q Consensus 601 k~a~~~s~~~L~~aL~iLsEaE~qLK~s~n~rl~LE~~LLkL~~ 644 (1018)
+.++...+.+++..+.+.+.+++.+.++.+.||.++++++.
T Consensus 279 ---~~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~ 319 (324)
T 3u61_B 279 ---SRVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLAC 319 (324)
T ss_dssp ---HHSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ---75999999999999999999998589999999999999987
No 10
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=297.70 Aligned_cols=310 Identities=16% Similarity=0.220 Sum_probs=269.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 87332122587886634692999999999998199983799997882179999999999970258888998887542101
Q 001748 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL 372 (1018)
Q Consensus 293 ~~~~L~eKyRP~tFdDIVGqe~ii~~Lk~aI~~grl~~alLL~GPpGTGKTsLAraLAkaLnc~~~~~~~PCg~C~sC~~ 372 (1018)
...||.+||+|..|++++|++.+++.|.+++..++.++ |||+||+|+|||++|+.+++.+.|...
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------- 71 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSY-------------- 71 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGH--------------
T ss_pred CCCCHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC--------------
T ss_conf 66748870388889998788999999999997699875-998891999999999999998369865--------------
Q ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHC--CCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 0368877510000001431368999999805--9998-898369999186422799999999997412886899999459
Q 001748 373 FSSGRSRDVKEVDSVRINRSDRVGSLMKSAF--LPPF-SSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPE 449 (1018)
Q Consensus 373 i~sG~s~dviEIdaas~~~vd~IReLie~a~--~~P~-~g~~KVIIIDEid~Ls~~a~nALLktLEEpp~~viiILaTt~ 449 (1018)
...+.++++....+++.++++++.+. ..+. .++++|+||||+|.++..++++|++++++++.+++||++|+.
T Consensus 72 -----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 72 -----ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp -----HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred -----CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf -----577799627665576999999999986056677888459999785437999999999998636888639998577
Q ss_pred CCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 88660788407408991799946899999999998269887999999999917999999999999996087567999999
Q 001748 450 LDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYE 529 (1018)
Q Consensus 450 ~~kLl~tI~SRcq~I~F~~ls~eeI~~~L~~ia~kEgi~Id~eAL~~LA~~s~GnlR~AlnlLekl~l~~~~IT~edV~e 529 (1018)
+.++++++.+||+.+.|.+++.+++..+|..++.++++.++++++..|++.++|++|.++++++++....+.|+.++|.+
T Consensus 147 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~ 226 (323)
T 1sxj_B 147 SNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFK 226 (323)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHH
T ss_pred HHHCHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 33310678733237760699999999999999997599999999999999759989999999999996489768999999
Q ss_pred HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 8534884689999999981992999999999-998299999999999999999994011365148999999865201799
Q 001748 530 LIGIVSDDELLDLLDLALSSDTSNTVIRARE-LMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADM 608 (1018)
Q Consensus 530 llG~v~ee~l~~Lldail~~d~~~aL~~l~e-Ll~~G~dpl~IL~~L~~~lrdLL~~k~~~~~~e~~~~~l~k~a~~~s~ 608 (1018)
+++......+++++++ ++...++..+.+ ++..|.++..++..+..+++.+ ..++.
T Consensus 227 ~~~~~~~~~i~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l---------------------~~~~~ 282 (323)
T 1sxj_B 227 IVDSPHPLIVKKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNL---------------------AQVKE 282 (323)
T ss_dssp HHTSCCHHHHHHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTC---------------------TTSCH
T ss_pred HHCCCCHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------------------CCCCH
T ss_conf 9789999999999965---98999999999999986999999999999999862---------------------43999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999998317895999999999810599
Q 001748 609 QKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSE 646 (1018)
Q Consensus 609 ~~L~~aL~iLsEaE~qLK~s~n~rl~LE~~LLkL~~~~ 646 (1018)
..+.+++..+.+++.++|.+.++.+.+|.++++++...
T Consensus 283 ~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~~~ 320 (323)
T 1sxj_B 283 SVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLN 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999855682899999999999642
Done!