Query 001749
Match_columns 1018
No_of_seqs 361 out of 3022
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 08:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 7E-126 2E-130 1051.3 101.2 1005 2-1016 3-1074(1075)
2 KOG2023 Nuclear transport rece 100.0 1.4E-75 3.1E-80 604.9 54.0 807 3-1016 13-884 (885)
3 KOG1241 Karyopherin (importin) 100.0 4.4E-60 9.5E-65 499.4 62.1 782 4-863 2-854 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 3.7E-49 8E-54 401.8 61.0 762 3-843 4-835 (858)
5 KOG2171 Karyopherin (importin) 100.0 5.4E-37 1.2E-41 343.0 73.4 811 7-926 83-1022(1075)
6 KOG1991 Nuclear transport rece 100.0 1.5E-31 3.3E-36 293.1 73.5 469 1-473 2-560 (1010)
7 KOG1824 TATA-binding protein-i 100.0 5E-30 1.1E-34 277.2 72.9 941 7-990 9-1186(1233)
8 KOG2023 Nuclear transport rece 100.0 2.3E-30 5E-35 269.9 47.9 667 14-832 59-826 (885)
9 KOG1824 TATA-binding protein-i 100.0 8.2E-29 1.8E-33 267.9 53.2 607 332-1005 42-700 (1233)
10 KOG1992 Nuclear export recepto 100.0 4.9E-27 1.1E-31 251.6 59.5 587 2-593 4-686 (960)
11 KOG1993 Nuclear transport rece 100.0 3.2E-26 7E-31 244.1 61.6 566 5-576 2-689 (978)
12 KOG1241 Karyopherin (importin) 100.0 2.5E-26 5.4E-31 244.6 53.3 627 71-792 122-822 (859)
13 KOG2274 Predicted importin 9 [ 100.0 7.9E-24 1.7E-28 229.8 69.2 540 3-556 4-623 (1005)
14 COG5656 SXM1 Importin, protein 99.9 2.1E-20 4.5E-25 198.6 64.3 500 1-508 1-587 (970)
15 COG5215 KAP95 Karyopherin (imp 99.9 1E-20 2.2E-25 194.8 52.3 569 8-599 99-735 (858)
16 KOG0213 Splicing factor 3b, su 99.9 2.7E-20 5.8E-25 197.0 51.4 659 172-946 375-1064(1172)
17 KOG0213 Splicing factor 3b, su 99.9 9.8E-20 2.1E-24 192.8 55.6 669 5-785 365-1111(1172)
18 PLN03200 cellulose synthase-in 99.9 1.1E-17 2.3E-22 204.8 64.4 782 3-913 13-866 (2102)
19 KOG2022 Nuclear transport rece 99.9 1.5E-15 3.2E-20 165.9 65.0 506 2-511 6-642 (982)
20 KOG2021 Nuclear mRNA export fa 99.9 1.9E-16 4.2E-21 169.0 56.7 592 1-596 1-747 (980)
21 PLN03200 cellulose synthase-in 99.9 3.6E-17 7.7E-22 200.3 56.8 796 82-1000 17-870 (2102)
22 COG5181 HSH155 U2 snRNP splice 99.9 5E-18 1.1E-22 176.6 41.3 667 7-792 172-924 (975)
23 COG5181 HSH155 U2 snRNP splice 99.9 1.9E-17 4.1E-22 172.3 44.7 725 172-1003 180-927 (975)
24 COG5101 CRM1 Importin beta-rel 99.8 2E-12 4.4E-17 135.8 69.7 480 4-493 15-652 (1053)
25 KOG0915 Uncharacterized conser 99.8 2E-15 4.2E-20 173.7 45.1 644 158-910 817-1513(1702)
26 KOG0915 Uncharacterized conser 99.8 4.2E-15 9E-20 171.1 47.5 603 119-865 819-1511(1702)
27 COG5657 CSE1 CAS/CSE protein i 99.8 1.3E-14 2.8E-19 159.7 48.4 523 7-533 8-609 (947)
28 KOG1242 Protein containing ada 99.8 3.9E-15 8.4E-20 158.7 35.9 477 90-599 28-547 (569)
29 KOG1242 Protein containing ada 99.8 8.3E-15 1.8E-19 156.2 37.0 516 169-807 27-549 (569)
30 KOG0212 Uncharacterized conser 99.7 6.7E-14 1.4E-18 145.5 37.2 520 343-967 6-541 (675)
31 PF01602 Adaptin_N: Adaptin N 99.6 1.3E-12 2.7E-17 152.6 39.6 508 3-573 7-522 (526)
32 PTZ00429 beta-adaptin; Provisi 99.6 2.5E-11 5.3E-16 139.7 48.4 406 74-532 136-545 (746)
33 KOG0212 Uncharacterized conser 99.6 6.9E-13 1.5E-17 138.0 29.6 394 163-577 4-408 (675)
34 KOG1991 Nuclear transport rece 99.6 2.5E-09 5.4E-14 120.0 59.3 445 173-671 256-771 (1010)
35 KOG0166 Karyopherin (importin) 99.6 4E-13 8.7E-18 142.9 26.8 361 120-494 68-441 (514)
36 KOG1248 Uncharacterized conser 99.6 5.3E-08 1.1E-12 111.9 68.5 782 139-1013 72-919 (1176)
37 PF01602 Adaptin_N: Adaptin N 99.6 2.4E-11 5.2E-16 141.9 42.2 471 7-532 46-523 (526)
38 KOG0166 Karyopherin (importin) 99.6 7.7E-12 1.7E-16 133.2 31.4 353 47-452 77-440 (514)
39 PTZ00429 beta-adaptin; Provisi 99.5 2.6E-09 5.5E-14 123.3 48.1 446 75-581 33-513 (746)
40 KOG1943 Beta-tubulin folding c 99.5 5.1E-08 1.1E-12 110.6 55.3 471 74-578 337-840 (1133)
41 KOG2081 Nuclear transport regu 99.5 6.1E-10 1.3E-14 117.7 37.7 451 21-492 2-539 (559)
42 KOG1248 Uncharacterized conser 99.4 1.9E-06 4.1E-11 99.5 66.1 715 79-910 94-901 (1176)
43 KOG1992 Nuclear export recepto 99.4 8.2E-07 1.8E-11 97.9 54.9 690 77-878 5-808 (960)
44 COG5064 SRP1 Karyopherin (impo 99.4 9.2E-12 2E-16 121.4 14.9 355 120-532 73-442 (526)
45 KOG1943 Beta-tubulin folding c 99.4 3.4E-06 7.4E-11 96.3 59.6 476 334-910 338-840 (1133)
46 KOG0211 Protein phosphatase 2A 99.3 6E-09 1.3E-13 118.6 36.6 536 4-575 121-664 (759)
47 PF10508 Proteasom_PSMB: Prote 99.3 1.3E-08 2.8E-13 115.1 39.4 392 83-490 43-463 (503)
48 KOG1060 Vesicle coat complex A 99.3 3E-08 6.5E-13 108.1 38.6 463 84-600 41-554 (968)
49 KOG0211 Protein phosphatase 2A 99.3 8.9E-09 1.9E-13 117.3 35.5 531 91-724 94-630 (759)
50 KOG2274 Predicted importin 9 [ 99.3 3.6E-06 7.8E-11 94.1 53.8 294 685-1005 486-795 (1005)
51 PRK09687 putative lyase; Provi 99.3 1.4E-09 3E-14 111.9 24.8 252 162-528 26-277 (280)
52 KOG1993 Nuclear transport rece 99.2 9.1E-06 2E-10 89.5 52.8 495 434-1016 412-976 (978)
53 PF10508 Proteasom_PSMB: Prote 99.2 4.7E-08 1E-12 110.5 36.9 396 123-578 43-465 (503)
54 PRK13800 putative oxidoreducta 99.2 2.2E-09 4.7E-14 130.6 27.7 274 120-486 623-896 (897)
55 COG5064 SRP1 Karyopherin (impo 99.2 2.8E-09 6.1E-14 104.4 22.2 392 39-484 75-491 (526)
56 PRK13800 putative oxidoreducta 99.2 3.7E-09 8.1E-14 128.6 27.9 273 81-445 624-896 (897)
57 KOG1060 Vesicle coat complex A 99.2 2.7E-07 5.8E-12 101.0 36.7 436 5-494 73-538 (968)
58 KOG0414 Chromosome condensatio 99.2 4.1E-05 8.8E-10 88.7 61.8 180 772-967 897-1083(1251)
59 PRK09687 putative lyase; Provi 99.2 1.2E-08 2.7E-13 105.0 25.3 254 120-445 25-279 (280)
60 PF12755 Vac14_Fab1_bd: Vacuol 99.1 1.1E-09 2.3E-14 91.1 11.4 94 353-447 2-95 (97)
61 PF12460 MMS19_C: RNAPII trans 99.1 2.1E-07 4.6E-12 103.2 32.9 378 121-508 2-413 (415)
62 PF08506 Cse1: Cse1; InterPro 99.1 2E-08 4.4E-13 107.0 23.5 219 221-443 111-370 (370)
63 KOG4224 Armadillo repeat prote 99.1 1.5E-08 3.3E-13 100.3 19.1 379 130-535 59-448 (550)
64 KOG1062 Vesicle coat complex A 99.1 7.7E-06 1.7E-10 90.5 41.6 486 16-580 47-549 (866)
65 KOG1020 Sister chromatid cohes 99.0 0.00023 4.9E-09 84.6 60.9 130 395-535 794-923 (1692)
66 KOG2020 Nuclear transport rece 99.0 5E-06 1.1E-10 98.1 40.0 224 4-237 11-260 (1041)
67 PF12460 MMS19_C: RNAPII trans 99.0 8.6E-07 1.9E-11 98.3 32.0 366 221-595 17-414 (415)
68 KOG0392 SNF2 family DNA-depend 99.0 1.6E-05 3.5E-10 92.0 40.5 162 47-211 88-258 (1549)
69 PF12348 CLASP_N: CLASP N term 98.9 4.6E-08 1E-12 99.6 18.2 189 341-537 11-210 (228)
70 KOG1062 Vesicle coat complex A 98.9 5.6E-05 1.2E-09 84.0 40.9 465 344-926 77-564 (866)
71 KOG1059 Vesicle coat complex A 98.9 8.4E-06 1.8E-10 88.8 33.0 226 40-302 149-381 (877)
72 KOG1061 Vesicle coat complex A 98.9 4.9E-06 1.1E-10 92.3 32.0 503 14-579 60-572 (734)
73 KOG4224 Armadillo repeat prote 98.9 4.3E-07 9.2E-12 90.3 20.9 446 19-492 24-496 (550)
74 PF12348 CLASP_N: CLASP N term 98.9 9.6E-08 2.1E-12 97.3 17.3 185 310-499 18-216 (228)
75 KOG1967 DNA repair/transcripti 98.9 0.00051 1.1E-08 77.8 49.1 130 767-902 886-1019(1030)
76 KOG1020 Sister chromatid cohes 98.8 0.00094 2E-08 79.7 57.7 161 320-488 798-959 (1692)
77 COG5240 SEC21 Vesicle coat com 98.8 0.00011 2.3E-09 78.1 38.0 248 314-583 279-561 (898)
78 PF03810 IBN_N: Importin-beta 98.8 2E-08 4.3E-13 81.7 8.6 66 23-88 1-76 (77)
79 KOG1240 Protein kinase contain 98.8 4.1E-07 9E-12 104.2 21.3 298 119-451 423-728 (1431)
80 PF12755 Vac14_Fab1_bd: Vacuol 98.8 4.3E-08 9.4E-13 81.6 9.5 87 394-480 2-88 (97)
81 PF03378 CAS_CSE1: CAS/CSE pro 98.8 1.9E-06 4.2E-11 94.1 24.6 144 451-594 17-166 (435)
82 KOG1059 Vesicle coat complex A 98.7 0.00042 9.1E-09 76.1 40.5 137 99-252 129-265 (877)
83 KOG4535 HEAT and armadillo rep 98.6 0.0002 4.2E-09 74.6 31.7 454 92-553 9-620 (728)
84 KOG0891 DNA-dependent protein 98.6 0.0097 2.1E-07 77.1 53.6 498 385-909 488-1043(2341)
85 KOG1240 Protein kinase contain 98.6 1.4E-05 3.1E-10 92.1 24.3 300 161-493 424-729 (1431)
86 KOG1061 Vesicle coat complex A 98.5 0.00064 1.4E-08 76.0 35.2 504 7-574 17-527 (734)
87 KOG1967 DNA repair/transcripti 98.5 0.0057 1.2E-07 69.7 54.6 164 682-866 860-1026(1030)
88 cd00020 ARM Armadillo/beta-cat 98.5 1.2E-06 2.5E-11 79.1 10.8 111 338-448 8-120 (120)
89 KOG1077 Vesicle coat complex A 98.5 0.001 2.2E-08 72.9 33.4 318 119-465 112-450 (938)
90 PF13513 HEAT_EZ: HEAT-like re 98.4 4.7E-07 1E-11 67.6 5.9 55 351-405 1-55 (55)
91 PF05804 KAP: Kinesin-associat 98.4 0.0016 3.5E-08 75.1 36.7 493 4-550 124-673 (708)
92 KOG2032 Uncharacterized conser 98.4 0.00011 2.3E-09 77.3 24.2 172 332-503 212-386 (533)
93 KOG1058 Vesicle coat complex C 98.4 0.0073 1.6E-07 67.1 42.5 437 342-867 25-466 (948)
94 KOG2259 Uncharacterized conser 98.4 0.00071 1.5E-08 73.6 29.2 294 158-496 197-518 (823)
95 COG5240 SEC21 Vesicle coat com 98.3 0.0084 1.8E-07 64.4 40.9 197 321-535 121-334 (898)
96 KOG2956 CLIP-associating prote 98.3 0.00013 2.9E-09 76.1 21.1 192 219-423 300-494 (516)
97 KOG2956 CLIP-associating prote 98.3 8.9E-05 1.9E-09 77.4 19.3 204 383-596 291-499 (516)
98 KOG1078 Vesicle coat complex C 98.2 0.0017 3.7E-08 72.4 29.9 299 116-457 243-541 (865)
99 cd00020 ARM Armadillo/beta-cat 98.2 5E-06 1.1E-10 74.9 9.0 110 379-488 8-119 (120)
100 KOG4413 26S proteasome regulat 98.2 0.0038 8.3E-08 62.1 29.0 337 96-489 60-439 (524)
101 KOG2022 Nuclear transport rece 98.2 0.018 3.9E-07 65.5 37.7 370 95-497 440-830 (982)
102 KOG0168 Putative ubiquitin fus 98.2 0.0015 3.3E-08 73.2 29.1 216 376-596 209-435 (1051)
103 KOG1058 Vesicle coat complex C 98.2 0.011 2.3E-07 65.8 34.9 413 7-491 24-465 (948)
104 KOG4535 HEAT and armadillo rep 98.2 0.0044 9.5E-08 65.0 29.8 457 129-597 7-583 (728)
105 PF13513 HEAT_EZ: HEAT-like re 98.2 3.2E-06 6.9E-11 63.1 5.4 55 392-446 1-55 (55)
106 KOG1820 Microtubule-associated 98.2 5.1E-05 1.1E-09 88.0 17.4 205 332-545 248-455 (815)
107 KOG0168 Putative ubiquitin fus 98.2 0.00032 6.9E-09 78.4 22.0 444 119-593 168-649 (1051)
108 KOG1077 Vesicle coat complex A 98.1 0.0022 4.9E-08 70.3 26.4 288 201-507 106-451 (938)
109 KOG0414 Chromosome condensatio 98.1 0.054 1.2E-06 64.0 61.2 156 291-450 269-430 (1251)
110 KOG0891 DNA-dependent protein 98.1 0.1 2.2E-06 68.2 44.7 596 313-986 107-759 (2341)
111 PF04510 DUF577: Family of unk 98.1 0.00016 3.5E-09 65.3 14.5 154 78-235 3-164 (174)
112 COG5096 Vesicle coat complex, 98.1 0.049 1.1E-06 62.8 41.5 164 14-190 30-196 (757)
113 KOG1078 Vesicle coat complex C 98.1 0.024 5.2E-07 63.7 33.7 89 97-191 38-131 (865)
114 PF08389 Xpo1: Exportin 1-like 98.0 2.4E-05 5.1E-10 73.6 9.4 128 93-230 2-148 (148)
115 PF05804 KAP: Kinesin-associat 98.0 0.0051 1.1E-07 71.1 29.3 369 91-492 262-652 (708)
116 PF12717 Cnd1: non-SMC mitotic 98.0 0.00011 2.3E-09 70.8 13.7 146 809-967 3-158 (178)
117 KOG1293 Proteins containing ar 98.0 0.011 2.4E-07 65.0 29.8 467 8-490 14-534 (678)
118 COG5656 SXM1 Importin, protein 98.0 0.05 1.1E-06 60.8 64.7 488 77-594 3-587 (970)
119 PLN03076 ARF guanine nucleotid 98.0 0.11 2.4E-06 66.7 42.3 276 48-331 1149-1492(1780)
120 PF04826 Arm_2: Armadillo-like 98.0 0.00053 1.2E-08 69.1 18.3 190 340-538 15-210 (254)
121 KOG1410 Nuclear transport rece 97.9 0.06 1.3E-06 59.2 47.6 145 3-148 5-158 (1082)
122 PF05004 IFRD: Interferon-rela 97.9 0.002 4.4E-08 67.6 21.6 199 381-579 46-261 (309)
123 KOG2259 Uncharacterized conser 97.9 0.013 2.8E-07 64.3 26.9 289 211-534 203-512 (823)
124 cd00256 VATPase_H VATPase_H, r 97.9 0.013 2.7E-07 63.6 27.1 351 34-407 52-425 (429)
125 PF13646 HEAT_2: HEAT repeats; 97.9 6.4E-05 1.4E-09 63.0 7.9 85 340-444 2-88 (88)
126 PF10274 ParcG: Parkin co-regu 97.8 0.00023 5.1E-09 66.1 11.2 122 417-538 36-169 (183)
127 PF03378 CAS_CSE1: CAS/CSE pro 97.8 0.011 2.5E-07 65.0 25.9 305 115-431 23-351 (435)
128 PF08167 RIX1: rRNA processing 97.8 0.00098 2.1E-08 62.9 15.4 135 374-510 21-164 (165)
129 KOG4653 Uncharacterized conser 97.8 0.0036 7.8E-08 70.6 21.7 219 262-491 740-966 (982)
130 PF13646 HEAT_2: HEAT repeats; 97.8 0.00013 2.9E-09 61.1 8.4 86 380-485 1-88 (88)
131 PF12717 Cnd1: non-SMC mitotic 97.7 0.0012 2.7E-08 63.5 15.8 110 391-507 1-111 (178)
132 COG5096 Vesicle coat complex, 97.7 0.16 3.5E-06 58.7 35.3 142 115-277 52-194 (757)
133 KOG2032 Uncharacterized conser 97.7 0.014 2.9E-07 62.1 23.9 262 119-407 259-531 (533)
134 KOG4653 Uncharacterized conser 97.7 0.0023 5E-08 72.1 19.3 195 380-585 729-928 (982)
135 KOG0889 Histone acetyltransfer 97.7 0.45 9.7E-06 63.3 43.8 118 133-258 22-149 (3550)
136 KOG0413 Uncharacterized conser 97.7 0.17 3.7E-06 58.2 39.6 108 79-188 577-684 (1529)
137 PF11864 DUF3384: Domain of un 97.7 0.15 3.3E-06 57.6 35.3 299 94-412 5-336 (464)
138 KOG1822 Uncharacterized conser 97.7 0.3 6.5E-06 60.9 57.3 213 380-596 878-1107(2067)
139 KOG2933 Uncharacterized conser 97.7 0.0016 3.5E-08 64.7 15.2 145 342-492 93-237 (334)
140 PF14500 MMS19_N: Dos2-interac 97.6 0.0079 1.7E-07 61.3 20.5 239 341-593 3-256 (262)
141 KOG0392 SNF2 family DNA-depend 97.6 0.29 6.2E-06 58.5 44.1 180 114-305 71-262 (1549)
142 PF05004 IFRD: Interferon-rela 97.6 0.013 2.8E-07 61.7 22.5 186 346-534 52-258 (309)
143 KOG4500 Rho/Rac GTPase guanine 97.6 0.018 3.9E-07 59.9 22.4 155 336-491 314-477 (604)
144 PF10274 ParcG: Parkin co-regu 97.6 0.00079 1.7E-08 62.7 11.4 93 791-884 36-132 (183)
145 PF14500 MMS19_N: Dos2-interac 97.6 0.027 5.9E-07 57.4 23.6 245 164-467 4-257 (262)
146 KOG2021 Nuclear mRNA export fa 97.6 0.22 4.7E-06 56.1 52.3 75 811-885 507-585 (980)
147 PLN03076 ARF guanine nucleotid 97.6 0.036 7.8E-07 70.9 29.3 356 69-431 1080-1514(1780)
148 KOG2062 26S proteasome regulat 97.6 0.085 1.8E-06 59.0 28.1 155 340-514 522-678 (929)
149 KOG2759 Vacuolar H+-ATPase V1 97.6 0.076 1.6E-06 55.6 26.2 351 35-408 65-439 (442)
150 KOG4524 Uncharacterized conser 97.6 0.29 6.3E-06 56.9 43.4 94 792-886 802-899 (1014)
151 KOG0946 ER-Golgi vesicle-tethe 97.5 0.29 6.3E-06 55.5 35.2 212 35-251 22-262 (970)
152 KOG1820 Microtubule-associated 97.5 0.0047 1E-07 72.2 18.5 187 310-502 264-457 (815)
153 KOG0889 Histone acetyltransfer 97.5 0.91 2E-05 60.6 40.5 418 152-572 714-1303(3550)
154 COG1413 FOG: HEAT repeat [Ener 97.5 0.042 9.1E-07 59.7 25.1 262 117-488 42-303 (335)
155 KOG4524 Uncharacterized conser 97.4 0.43 9.4E-06 55.6 38.8 114 397-512 567-685 (1014)
156 PF08506 Cse1: Cse1; InterPro 97.4 0.13 2.8E-06 55.5 27.0 250 227-484 61-370 (370)
157 PF02985 HEAT: HEAT repeat; I 97.4 0.00025 5.4E-09 45.0 3.8 31 379-409 1-31 (31)
158 PF05918 API5: Apoptosis inhib 97.4 0.18 3.9E-06 56.5 28.2 310 37-370 22-349 (556)
159 PF08167 RIX1: rRNA processing 97.3 0.0069 1.5E-07 57.2 14.7 135 333-469 21-164 (165)
160 KOG4413 26S proteasome regulat 97.3 0.21 4.6E-06 50.2 30.8 365 131-575 53-439 (524)
161 KOG1822 Uncharacterized conser 97.3 0.88 1.9E-05 57.1 62.3 193 37-236 53-249 (2067)
162 PF13251 DUF4042: Domain of un 97.3 0.0024 5.3E-08 60.2 11.0 139 353-491 2-176 (182)
163 KOG1851 Uncharacterized conser 97.2 0.39 8.5E-06 58.8 30.3 175 315-493 1503-1682(1710)
164 KOG2933 Uncharacterized conser 97.2 0.0033 7.1E-08 62.6 11.3 156 310-471 99-259 (334)
165 PF02985 HEAT: HEAT repeat; I 97.2 0.00055 1.2E-08 43.4 3.9 30 836-865 1-30 (31)
166 TIGR02270 conserved hypothetic 97.2 0.24 5.2E-06 54.3 25.8 148 79-273 55-202 (410)
167 KOG1293 Proteins containing ar 97.1 0.65 1.4E-05 51.8 35.7 464 49-531 22-531 (678)
168 PF05918 API5: Apoptosis inhib 97.1 0.086 1.9E-06 58.9 22.0 275 217-511 33-320 (556)
169 PF05536 Neurochondrin: Neuroc 97.1 0.85 1.8E-05 52.3 31.4 241 33-281 3-264 (543)
170 TIGR02270 conserved hypothetic 97.1 0.025 5.3E-07 61.8 17.5 119 339-488 88-206 (410)
171 PF13251 DUF4042: Domain of un 97.1 0.0057 1.2E-07 57.7 10.9 141 95-238 2-177 (182)
172 PF04826 Arm_2: Armadillo-like 97.1 0.018 3.9E-07 58.3 15.2 186 81-278 15-205 (254)
173 COG1413 FOG: HEAT repeat [Ener 97.1 0.025 5.5E-07 61.5 17.8 185 337-573 43-240 (335)
174 KOG2025 Chromosome condensatio 97.0 0.84 1.8E-05 51.3 36.1 111 71-186 78-190 (892)
175 PF10521 DUF2454: Protein of u 97.0 0.061 1.3E-06 56.1 19.3 164 350-513 88-277 (282)
176 KOG2062 26S proteasome regulat 97.0 0.089 1.9E-06 58.8 20.6 267 117-434 412-680 (929)
177 PF11865 DUF3385: Domain of un 97.0 0.0094 2E-07 55.7 11.5 144 335-491 8-159 (160)
178 KOG2160 Armadillo/beta-catenin 97.0 0.14 3.1E-06 52.9 20.5 149 129-281 94-243 (342)
179 cd00256 VATPase_H VATPase_H, r 97.0 0.48 1E-05 51.7 25.7 333 131-488 67-424 (429)
180 PF13001 Ecm29: Proteasome sta 97.0 1.1 2.4E-05 51.2 30.6 381 7-406 27-487 (501)
181 KOG1837 Uncharacterized conser 96.9 0.41 8.8E-06 58.8 26.8 97 769-870 1521-1617(1621)
182 KOG1048 Neural adherens juncti 96.9 0.22 4.8E-06 56.8 23.5 361 116-486 230-681 (717)
183 COG5116 RPN2 26S proteasome re 96.9 0.011 2.4E-07 63.4 12.2 154 340-513 519-674 (926)
184 PF12719 Cnd3: Nuclear condens 96.8 0.34 7.4E-06 51.3 23.1 158 117-281 25-188 (298)
185 KOG2160 Armadillo/beta-catenin 96.8 0.065 1.4E-06 55.3 16.5 147 347-493 93-244 (342)
186 KOG1517 Guanine nucleotide bin 96.8 0.14 3.1E-06 59.6 20.4 240 203-494 473-737 (1387)
187 PF11864 DUF3384: Domain of un 96.8 1.5 3.2E-05 49.8 35.6 268 18-304 5-313 (464)
188 PF05536 Neurochondrin: Neuroc 96.7 1.8 3.8E-05 49.8 34.9 238 337-581 5-267 (543)
189 KOG1949 Uncharacterized conser 96.7 0.25 5.4E-06 55.1 20.3 177 10-191 181-373 (1005)
190 PF13001 Ecm29: Proteasome sta 96.6 2.1 4.5E-05 49.0 30.7 177 313-495 251-449 (501)
191 PF11865 DUF3385: Domain of un 96.5 0.065 1.4E-06 50.1 13.5 149 688-865 9-158 (160)
192 PF08064 UME: UME (NUC010) dom 96.5 0.02 4.3E-07 49.2 8.9 98 454-556 5-106 (107)
193 KOG0413 Uncharacterized conser 96.5 2.7 5.8E-05 49.1 37.6 106 158-274 575-681 (1529)
194 PF12231 Rif1_N: Rap1-interact 96.4 2 4.4E-05 47.0 30.7 276 172-493 5-307 (372)
195 KOG2025 Chromosome condensatio 96.4 1.3 2.9E-05 49.8 23.7 126 137-273 61-188 (892)
196 PF12054 DUF3535: Domain of un 96.3 0.79 1.7E-05 51.0 22.6 240 351-601 101-368 (441)
197 KOG1949 Uncharacterized conser 96.3 1.1 2.4E-05 50.3 22.8 200 66-278 113-331 (1005)
198 KOG2137 Protein kinase [Signal 96.2 0.71 1.5E-05 52.4 21.2 190 702-923 285-474 (700)
199 KOG1243 Protein kinase [Genera 96.2 0.11 2.4E-06 58.3 14.8 189 288-489 326-515 (690)
200 PF08064 UME: UME (NUC010) dom 96.2 0.07 1.5E-06 45.9 10.7 98 371-470 4-106 (107)
201 PF12719 Cnd3: Nuclear condens 96.2 0.61 1.3E-05 49.4 20.0 111 77-191 26-145 (298)
202 PF01603 B56: Protein phosphat 96.1 0.083 1.8E-06 58.3 13.7 236 4-247 134-382 (409)
203 smart00802 UME Domain in UVSB 96.0 0.048 1E-06 46.4 8.7 97 454-555 5-105 (107)
204 smart00802 UME Domain in UVSB 95.9 0.088 1.9E-06 44.9 9.9 97 371-469 4-105 (107)
205 KOG2149 Uncharacterized conser 95.9 0.17 3.8E-06 53.0 13.8 132 380-511 60-192 (393)
206 KOG1517 Guanine nucleotide bin 95.9 0.34 7.4E-06 56.7 17.1 237 159-409 472-734 (1387)
207 PF01603 B56: Protein phosphat 95.9 0.92 2E-05 50.2 20.4 302 706-1009 42-389 (409)
208 KOG0567 HEAT repeat-containing 95.7 1.4 3.1E-05 43.5 18.1 67 502-580 219-285 (289)
209 KOG2549 Transcription initiati 95.6 0.67 1.5E-05 50.6 16.9 164 337-509 207-391 (576)
210 KOG1837 Uncharacterized conser 95.5 9.8 0.00021 47.6 37.2 96 435-537 1520-1615(1621)
211 cd08050 TAF6 TATA Binding Prot 95.5 0.14 3.1E-06 54.8 11.9 142 337-487 178-338 (343)
212 PF03224 V-ATPase_H_N: V-ATPas 95.5 0.9 1.9E-05 48.5 18.1 195 35-239 55-273 (312)
213 PF10363 DUF2435: Protein of u 95.4 0.16 3.4E-06 42.1 9.1 84 340-431 6-89 (92)
214 KOG0567 HEAT repeat-containing 95.3 2.2 4.7E-05 42.3 17.9 114 351-494 170-285 (289)
215 KOG2137 Protein kinase [Signal 95.1 1.5 3.1E-05 50.0 18.2 135 115-259 386-520 (700)
216 COG5116 RPN2 26S proteasome re 95.1 0.24 5.3E-06 53.6 11.7 115 345-473 560-675 (926)
217 PF12231 Rif1_N: Rap1-interact 95.1 6.6 0.00014 43.0 28.9 160 390-579 146-307 (372)
218 PF04118 Dopey_N: Dopey, N-ter 95.0 2.7 5.8E-05 44.0 19.0 153 342-494 16-172 (307)
219 KOG2149 Uncharacterized conser 94.7 0.58 1.3E-05 49.3 13.0 129 343-471 64-193 (393)
220 PF10363 DUF2435: Protein of u 94.6 0.17 3.7E-06 41.9 7.4 74 379-453 4-77 (92)
221 PF10521 DUF2454: Protein of u 94.6 2.1 4.5E-05 44.8 17.3 148 451-598 110-276 (282)
222 KOG1243 Protein kinase [Genera 94.5 0.95 2.1E-05 51.2 15.0 188 248-452 331-519 (690)
223 KOG3961 Uncharacterized conser 94.5 0.14 3.1E-06 48.1 7.3 94 417-510 112-208 (262)
224 KOG1222 Kinesin associated pro 94.5 8.6 0.00019 41.4 22.8 117 394-512 279-397 (791)
225 COG5218 YCG1 Chromosome conden 94.4 2.7 5.9E-05 46.2 17.5 107 374-484 87-194 (885)
226 KOG1525 Sister chromatid cohes 94.3 20 0.00043 45.1 46.6 346 203-575 46-405 (1266)
227 PF03224 V-ATPase_H_N: V-ATPas 94.2 2.9 6.2E-05 44.7 17.9 166 339-510 108-292 (312)
228 PF08767 CRM1_C: CRM1 C termin 94.2 9.2 0.0002 40.8 21.3 143 765-908 89-245 (319)
229 PF12726 SEN1_N: SEN1 N termin 94.2 18 0.00039 43.9 30.8 161 78-241 77-249 (727)
230 cd08050 TAF6 TATA Binding Prot 94.1 0.39 8.5E-06 51.5 10.8 126 321-446 197-338 (343)
231 PF08623 TIP120: TATA-binding 94.0 0.27 5.9E-06 45.7 8.0 96 373-471 4-117 (169)
232 KOG2549 Transcription initiati 94.0 2.5 5.5E-05 46.4 16.2 151 321-471 226-394 (576)
233 COG5095 TAF6 Transcription ini 93.7 2 4.4E-05 42.9 13.8 147 375-534 198-360 (450)
234 PF12054 DUF3535: Domain of un 93.6 7.1 0.00015 43.6 19.8 195 314-513 102-366 (441)
235 PF08623 TIP120: TATA-binding 93.6 0.72 1.6E-05 43.0 10.1 131 870-1002 3-165 (169)
236 smart00638 LPD_N Lipoprotein N 93.5 5.5 0.00012 47.0 20.3 152 319-484 376-540 (574)
237 COG5095 TAF6 Transcription ini 93.4 1.9 4.2E-05 43.0 13.1 133 315-450 214-361 (450)
238 KOG2759 Vacuolar H+-ATPase V1 93.4 13 0.00028 39.8 20.4 310 115-449 115-439 (442)
239 KOG4500 Rho/Rac GTPase guanine 93.2 14 0.0003 39.5 33.3 260 219-491 237-521 (604)
240 KOG1851 Uncharacterized conser 93.2 31 0.00067 43.5 34.0 175 392-579 1501-1682(1710)
241 KOG0946 ER-Golgi vesicle-tethe 93.2 21 0.00044 41.5 39.9 176 315-492 39-244 (970)
242 PF01347 Vitellogenin_N: Lipop 93.2 14 0.00031 44.0 23.3 128 333-484 486-617 (618)
243 smart00638 LPD_N Lipoprotein N 93.1 20 0.00043 42.4 23.9 169 292-484 393-573 (574)
244 PF12530 DUF3730: Protein of u 92.9 12 0.00025 37.9 21.0 196 261-478 13-221 (234)
245 PF01347 Vitellogenin_N: Lipop 92.7 3.2 6.9E-05 49.6 16.8 149 319-484 414-584 (618)
246 KOG3961 Uncharacterized conser 92.6 0.48 1E-05 44.7 7.3 87 795-882 116-205 (262)
247 cd03568 VHS_STAM VHS domain fa 92.6 1.9 4.1E-05 39.4 11.2 76 377-452 36-114 (144)
248 COG5231 VMA13 Vacuolar H+-ATPa 92.5 14 0.0003 37.8 22.3 192 197-407 230-428 (432)
249 COG5657 CSE1 CAS/CSE protein i 92.4 28 0.00061 41.2 33.0 77 893-969 508-585 (947)
250 PF04118 Dopey_N: Dopey, N-ter 92.3 16 0.00036 38.3 24.5 119 454-580 48-172 (307)
251 COG5218 YCG1 Chromosome conden 91.8 25 0.00054 39.2 40.7 105 75-184 88-194 (885)
252 PF14222 MOR2-PAG1_N: Cell mor 91.8 10 0.00023 43.6 18.5 106 78-188 129-248 (552)
253 KOG0803 Predicted E3 ubiquitin 91.8 13 0.00029 46.7 20.2 258 158-450 40-306 (1312)
254 PF08569 Mo25: Mo25-like; Int 91.7 21 0.00046 38.1 25.0 192 79-279 77-284 (335)
255 PF00514 Arm: Armadillo/beta-c 91.5 0.35 7.5E-06 33.0 4.0 29 835-863 12-40 (41)
256 KOG2213 Apoptosis inhibitor 5/ 91.5 9.9 0.00021 40.0 15.7 126 382-518 29-168 (460)
257 KOG2081 Nuclear transport regu 91.4 27 0.00059 38.9 36.9 177 416-600 150-353 (559)
258 PF08767 CRM1_C: CRM1 C termin 91.3 23 0.0005 37.8 22.2 106 175-282 42-153 (319)
259 cd03569 VHS_Hrs_Vps27p VHS dom 91.1 3.8 8.3E-05 37.4 11.5 77 377-453 40-119 (142)
260 PF12074 DUF3554: Domain of un 91.0 26 0.00057 37.9 22.5 176 331-511 55-254 (339)
261 PF12530 DUF3730: Protein of u 91.0 19 0.00042 36.4 20.7 195 13-221 11-218 (234)
262 KOG1048 Neural adherens juncti 90.8 38 0.00083 39.5 23.7 96 4-103 234-344 (717)
263 PF00514 Arm: Armadillo/beta-c 90.7 0.48 1E-05 32.4 4.1 29 378-406 12-40 (41)
264 COG5098 Chromosome condensatio 90.6 36 0.00078 38.9 62.0 117 162-282 302-419 (1128)
265 PF08389 Xpo1: Exportin 1-like 90.4 4.2 9.2E-05 37.6 11.7 123 317-443 6-148 (148)
266 PF12074 DUF3554: Domain of un 90.3 22 0.00047 38.6 18.7 198 790-994 19-239 (339)
267 cd03567 VHS_GGA VHS domain fam 90.1 8 0.00017 35.1 12.4 100 345-452 13-120 (139)
268 PF08569 Mo25: Mo25-like; Int 90.0 30 0.00065 37.0 22.6 184 49-237 89-285 (335)
269 cd03561 VHS VHS domain family; 89.9 7.2 0.00016 35.3 12.2 76 377-452 36-116 (133)
270 cd03568 VHS_STAM VHS domain fa 89.7 6.5 0.00014 36.0 11.7 78 458-537 35-114 (144)
271 PF00790 VHS: VHS domain; Int 89.6 5.5 0.00012 36.4 11.4 92 445-537 28-122 (140)
272 KOG2842 Interferon-related pro 89.1 33 0.00073 36.3 17.6 206 346-551 69-294 (427)
273 cd03569 VHS_Hrs_Vps27p VHS dom 89.1 3.8 8.2E-05 37.4 9.7 77 418-494 40-119 (142)
274 smart00288 VHS Domain present 88.9 9.4 0.0002 34.5 12.1 79 458-537 35-115 (133)
275 PF08146 BP28CT: BP28CT (NUC21 88.6 4 8.7E-05 37.8 9.7 130 728-866 6-149 (153)
276 PF11698 V-ATPase_H_C: V-ATPas 88.6 1.9 4.2E-05 37.3 6.9 71 117-189 42-115 (119)
277 PF14868 DUF4487: Domain of un 88.5 52 0.0011 37.8 24.5 285 95-410 244-555 (559)
278 COG5231 VMA13 Vacuolar H+-ATPa 88.5 32 0.0007 35.3 18.7 71 378-449 356-429 (432)
279 PF12830 Nipped-B_C: Sister ch 88.2 7.7 0.00017 37.6 11.9 86 160-255 9-94 (187)
280 COG5098 Chromosome condensatio 87.9 56 0.0012 37.4 49.5 131 317-449 280-416 (1128)
281 PF09324 DUF1981: Domain of un 87.5 3.9 8.5E-05 33.5 7.9 70 158-232 16-85 (86)
282 KOG2011 Sister chromatid cohes 87.4 82 0.0018 38.7 22.2 129 353-483 261-393 (1048)
283 cd03567 VHS_GGA VHS domain fam 87.3 6.9 0.00015 35.5 10.1 98 387-492 14-119 (139)
284 PF11919 DUF3437: Domain of un 87.0 0.61 1.3E-05 38.3 2.9 78 934-1014 5-82 (90)
285 cd03561 VHS VHS domain family; 86.9 13 0.00028 33.7 11.8 80 458-537 35-116 (133)
286 KOG0803 Predicted E3 ubiquitin 86.8 53 0.0011 41.7 20.2 106 343-448 47-153 (1312)
287 PF14225 MOR2-PAG1_C: Cell mor 86.5 41 0.0009 34.5 18.6 194 244-452 61-258 (262)
288 PF12333 Ipi1_N: Rix1 complex 86.5 2.9 6.3E-05 35.6 6.9 62 370-431 3-65 (102)
289 smart00288 VHS Domain present 86.4 10 0.00023 34.2 10.8 76 377-452 36-115 (133)
290 PF00790 VHS: VHS domain; Int 86.0 23 0.00049 32.4 13.1 75 377-451 41-121 (140)
291 PF12765 Cohesin_HEAT: HEAT re 85.3 1.4 3.1E-05 30.1 3.6 41 360-402 2-42 (42)
292 PF11701 UNC45-central: Myosin 85.1 9.5 0.00021 35.7 10.3 130 313-444 19-155 (157)
293 PF09324 DUF1981: Domain of un 84.9 4.5 9.9E-05 33.1 7.1 70 75-144 14-85 (86)
294 KOG4199 Uncharacterized conser 84.8 53 0.0011 34.2 34.5 110 376-487 330-442 (461)
295 KOG1848 Uncharacterized conser 84.8 1.2E+02 0.0026 38.2 24.8 248 92-367 855-1133(1610)
296 KOG3036 Protein involved in ce 84.4 39 0.00084 33.5 13.8 83 222-304 95-180 (293)
297 KOG2038 CAATT-binding transcri 84.1 92 0.002 36.3 30.1 110 155-278 300-409 (988)
298 PF12333 Ipi1_N: Rix1 complex 84.0 5.9 0.00013 33.7 7.6 61 828-888 4-65 (102)
299 PF12830 Nipped-B_C: Sister ch 83.4 45 0.00098 32.3 15.6 73 79-154 9-81 (187)
300 PF08713 DNA_alkylation: DNA a 82.8 4.7 0.0001 40.3 7.8 77 336-418 119-195 (213)
301 KOG1525 Sister chromatid cohes 82.7 1.5E+02 0.0033 37.8 55.5 144 334-477 256-441 (1266)
302 PF14664 RICTOR_N: Rapamycin-i 82.7 79 0.0017 34.5 19.1 237 334-575 22-269 (371)
303 PF08713 DNA_alkylation: DNA a 82.7 37 0.0008 33.7 14.3 152 18-191 34-186 (213)
304 PF11698 V-ATPase_H_C: V-ATPas 82.4 6.3 0.00014 34.3 7.1 70 378-448 43-115 (119)
305 PF14664 RICTOR_N: Rapamycin-i 82.3 82 0.0018 34.4 20.6 214 218-448 37-269 (371)
306 cd03572 ENTH_epsin_related ENT 82.3 28 0.0006 30.7 11.1 73 376-448 36-119 (122)
307 PF07571 DUF1546: Protein of u 82.0 4.6 0.0001 33.6 6.1 57 310-366 17-78 (92)
308 cd03565 VHS_Tom1 VHS domain fa 81.8 23 0.00049 32.4 11.0 113 345-465 13-133 (141)
309 PF11919 DUF3437: Domain of un 81.5 2.5 5.4E-05 34.7 4.2 61 352-413 4-64 (90)
310 cd03565 VHS_Tom1 VHS domain fa 80.8 36 0.00078 31.1 11.9 80 458-537 36-119 (141)
311 KOG2011 Sister chromatid cohes 79.1 86 0.0019 38.6 17.1 135 129-276 298-433 (1048)
312 PF14668 RICTOR_V: Rapamycin-i 78.6 6 0.00013 31.0 5.3 55 353-409 3-60 (73)
313 PF04388 Hamartin: Hamartin pr 78.3 66 0.0014 38.3 16.2 97 154-256 65-161 (668)
314 KOG2199 Signal transducing ada 78.2 25 0.00054 37.1 10.9 101 344-452 19-122 (462)
315 PF12765 Cohesin_HEAT: HEAT re 78.1 3 6.5E-05 28.6 3.1 41 141-184 2-42 (42)
316 cd00197 VHS_ENTH_ANTH VHS, ENT 77.6 34 0.00074 29.9 10.6 73 334-406 34-114 (115)
317 PF11701 UNC45-central: Myosin 77.5 8.8 0.00019 35.9 7.2 143 38-186 6-156 (157)
318 KOG1848 Uncharacterized conser 77.5 2.1E+02 0.0045 36.3 27.2 247 172-450 854-1134(1610)
319 PF04078 Rcd1: Cell differenti 77.2 60 0.0013 32.8 12.9 108 173-281 8-128 (262)
320 PF07571 DUF1546: Protein of u 77.0 8.1 0.00018 32.1 6.0 60 348-407 17-78 (92)
321 KOG2122 Beta-catenin-binding p 76.6 2.3E+02 0.005 36.3 23.0 53 460-512 530-583 (2195)
322 PF14631 FancD2: Fanconi anaem 76.4 44 0.00096 43.4 14.9 140 371-514 428-567 (1426)
323 KOG4199 Uncharacterized conser 75.9 1.1E+02 0.0023 32.1 27.2 272 215-501 116-415 (461)
324 KOG0929 Guanine nucleotide exc 75.9 1.9E+02 0.0041 37.4 19.2 229 90-331 1048-1301(1514)
325 KOG2973 Uncharacterized conser 75.7 26 0.00056 35.9 10.0 104 342-449 8-112 (353)
326 PF04078 Rcd1: Cell differenti 75.5 13 0.00028 37.4 7.8 135 771-907 69-218 (262)
327 KOG1810 Cell cycle-associated 75.2 1.1E+02 0.0024 38.1 16.5 162 289-450 776-968 (1417)
328 smart00185 ARM Armadillo/beta- 74.3 4.5 9.8E-05 27.2 3.3 28 836-863 13-40 (41)
329 smart00185 ARM Armadillo/beta- 74.1 4.7 0.0001 27.1 3.4 28 379-406 13-40 (41)
330 KOG2973 Uncharacterized conser 73.9 21 0.00045 36.6 8.8 89 381-474 6-96 (353)
331 PF04510 DUF577: Family of unk 73.4 26 0.00057 32.6 8.7 100 380-485 5-110 (174)
332 cd03572 ENTH_epsin_related ENT 73.3 51 0.0011 29.1 10.1 74 334-407 35-119 (122)
333 PF12783 Sec7_N: Guanine nucle 72.8 67 0.0014 30.5 12.1 100 350-449 35-147 (168)
334 cd06561 AlkD_like A new struct 72.5 14 0.00031 36.2 7.7 73 340-417 108-180 (197)
335 PF04388 Hamartin: Hamartin pr 72.0 15 0.00032 43.6 8.7 92 793-887 70-163 (668)
336 COG5537 IRR1 Cohesin [Cell div 71.5 1.9E+02 0.0041 33.0 17.6 115 372-488 268-385 (740)
337 KOG1877 Putative transmembrane 71.0 1.3E+02 0.0028 35.9 15.5 130 342-471 61-204 (819)
338 PF11935 DUF3453: Domain of un 70.4 1.3E+02 0.0028 30.6 14.5 126 168-301 2-162 (239)
339 PF12783 Sec7_N: Guanine nucle 70.0 63 0.0014 30.6 11.2 98 392-489 36-146 (168)
340 cd00197 VHS_ENTH_ANTH VHS, ENT 68.8 80 0.0017 27.6 11.5 71 376-446 35-113 (115)
341 COG5369 Uncharacterized conser 68.5 97 0.0021 34.6 12.9 132 317-448 407-545 (743)
342 COG5369 Uncharacterized conser 68.0 9.5 0.00021 41.9 5.4 134 355-489 407-545 (743)
343 KOG3678 SARM protein (with ste 67.8 73 0.0016 34.6 11.6 110 796-907 224-336 (832)
344 PF10350 DUF2428: Putative dea 67.7 1.3E+02 0.0028 30.9 13.6 154 351-504 61-243 (255)
345 PF08146 BP28CT: BP28CT (NUC21 65.6 42 0.00091 31.2 8.6 99 475-574 36-146 (153)
346 KOG0929 Guanine nucleotide exc 65.1 3E+02 0.0064 35.7 17.7 230 347-584 1047-1307(1514)
347 PF12397 U3snoRNP10: U3 small 63.9 32 0.00069 30.5 7.4 74 374-450 2-76 (121)
348 PF03130 HEAT_PBS: PBS lyase H 63.0 5.6 0.00012 24.1 1.6 14 394-407 1-14 (27)
349 KOG2005 26S proteasome regulat 63.0 2.9E+02 0.0063 32.0 17.4 61 380-446 642-702 (878)
350 KOG2122 Beta-catenin-binding p 62.0 4.6E+02 0.0099 33.9 25.0 72 378-450 530-603 (2195)
351 COG5110 RPN1 26S proteasome re 61.5 1.9E+02 0.0041 32.4 13.4 219 336-573 449-668 (881)
352 cd03562 CID CID (CTD-Interacti 61.3 48 0.001 28.9 7.9 74 789-863 33-107 (114)
353 COG5234 CIN1 Beta-tubulin fold 61.2 60 0.0013 37.3 10.0 223 334-573 243-489 (993)
354 PF11841 DUF3361: Domain of un 60.9 75 0.0016 29.5 9.1 76 418-493 57-135 (160)
355 PF10350 DUF2428: Putative dea 60.7 1.3E+02 0.0028 30.9 12.1 59 415-473 185-253 (255)
356 cd07064 AlkD_like_1 A new stru 60.7 69 0.0015 31.7 9.7 74 338-417 116-189 (208)
357 PF12397 U3snoRNP10: U3 small 60.6 67 0.0015 28.4 8.8 74 831-909 2-76 (121)
358 PF10441 Urb2: Urb2/Npa2 famil 60.6 1.9E+02 0.0041 29.0 14.5 161 855-1015 8-212 (223)
359 PF04499 SAPS: SIT4 phosphatas 59.5 3.1E+02 0.0068 31.2 16.2 76 834-911 61-152 (475)
360 PF05327 RRN3: RNA polymerase 58.9 2.7E+02 0.0058 32.7 15.6 115 833-954 71-199 (563)
361 PF03542 Tuberin: Tuberin; In 58.7 2E+02 0.0043 31.1 13.2 93 392-489 211-303 (356)
362 KOG1087 Cytosolic sorting prot 57.5 85 0.0018 35.1 10.5 101 344-452 12-116 (470)
363 PF11707 Npa1: Ribosome 60S bi 57.1 2.8E+02 0.006 29.9 16.8 153 339-491 58-239 (330)
364 PF08161 NUC173: NUC173 domain 56.9 2E+02 0.0043 28.1 13.7 55 358-412 21-75 (198)
365 PF08161 NUC173: NUC173 domain 56.5 40 0.00087 32.9 7.1 73 465-540 5-77 (198)
366 KOG3036 Protein involved in ce 55.8 2.3E+02 0.0049 28.4 13.5 139 50-189 92-247 (293)
367 PF12612 TFCD_C: Tubulin foldi 55.3 2.1E+02 0.0045 27.9 13.7 151 74-236 3-159 (193)
368 PF14225 MOR2-PAG1_C: Cell mor 54.1 2.7E+02 0.0058 28.7 20.5 196 378-597 29-238 (262)
369 KOG2213 Apoptosis inhibitor 5/ 52.9 3.3E+02 0.0071 29.4 23.3 119 174-304 38-163 (460)
370 KOG3687 Tuberin - Rap/ran-GTPa 52.3 5.2E+02 0.011 31.6 32.9 47 389-435 484-530 (1697)
371 smart00567 EZ_HEAT E-Z type HE 51.5 21 0.00046 22.1 2.9 15 351-365 1-15 (30)
372 PF11935 DUF3453: Domain of un 51.1 2.8E+02 0.0061 28.1 18.7 121 387-511 2-163 (239)
373 PF14911 MMS22L_C: S-phase gen 50.8 3.6E+02 0.0078 29.3 20.0 204 374-578 65-313 (373)
374 KOG2256 Predicted protein invo 50.1 4.7E+02 0.01 30.4 25.5 196 397-594 261-475 (661)
375 KOG2038 CAATT-binding transcri 47.9 5.5E+02 0.012 30.5 25.7 77 201-283 299-375 (988)
376 COG5101 CRM1 Importin beta-rel 47.0 5.1E+02 0.011 29.9 55.9 78 374-451 566-651 (1053)
377 PF10165 Ric8: Guanine nucleot 45.5 5E+02 0.011 29.4 22.7 62 172-233 44-106 (446)
378 PF14668 RICTOR_V: Rapamycin-i 45.4 70 0.0015 25.2 5.4 54 395-450 4-60 (73)
379 cd03562 CID CID (CTD-Interacti 44.5 2E+02 0.0043 25.0 9.1 85 390-483 17-102 (114)
380 KOG1087 Cytosolic sorting prot 44.0 1.8E+02 0.0039 32.6 10.4 88 460-548 38-128 (470)
381 PF12243 CTK3: CTD kinase subu 44.0 1.4E+02 0.0031 27.1 8.0 80 381-469 11-93 (139)
382 KOG2199 Signal transducing ada 43.6 3.2E+02 0.0069 29.4 11.2 69 442-511 28-98 (462)
383 PF02520 DUF148: Domain of unk 43.4 1.7E+02 0.0037 25.5 8.4 96 899-998 4-101 (113)
384 PF03810 IBN_N: Importin-beta 43.2 1.1E+02 0.0023 24.2 6.7 58 958-1015 13-71 (77)
385 COG4912 Predicted DNA alkylati 42.7 2.1E+02 0.0045 28.2 9.2 84 322-411 102-187 (222)
386 PF05327 RRN3: RNA polymerase 41.6 6.4E+02 0.014 29.6 21.0 37 244-280 343-379 (563)
387 PF06685 DUF1186: Protein of u 41.4 4E+02 0.0087 27.1 16.7 153 332-511 30-195 (249)
388 KOG1222 Kinesin associated pro 40.6 5.5E+02 0.012 28.5 23.7 52 117-170 344-397 (791)
389 KOG2153 Protein involved in th 38.2 5.6E+02 0.012 29.7 12.8 70 415-487 320-390 (704)
390 COG5209 RCD1 Uncharacterized p 37.8 1.3E+02 0.0028 29.4 6.9 82 223-304 117-201 (315)
391 PF06685 DUF1186: Protein of u 37.5 4.6E+02 0.01 26.7 14.4 49 879-927 114-163 (249)
392 PF04869 Uso1_p115_head: Uso1 37.4 4.5E+02 0.0098 27.9 11.8 140 349-488 50-230 (312)
393 PF01417 ENTH: ENTH domain; I 37.3 2.8E+02 0.0062 24.6 9.1 92 311-405 15-119 (125)
394 cd00872 PI3Ka_I Phosphoinositi 36.7 1.4E+02 0.003 28.3 7.1 77 117-211 38-114 (171)
395 PF14961 BROMI: Broad-minded p 36.0 4.6E+02 0.01 33.1 12.6 129 381-512 164-316 (1296)
396 PF04869 Uso1_p115_head: Uso1 35.7 3.9E+02 0.0085 28.4 11.0 141 390-531 50-229 (312)
397 PF12726 SEN1_N: SEN1 N termin 35.0 9.2E+02 0.02 29.5 37.6 161 117-286 76-251 (727)
398 KOG1877 Putative transmembrane 34.4 9.2E+02 0.02 29.3 24.7 141 370-512 9-151 (819)
399 cd00872 PI3Ka_I Phosphoinositi 34.1 4.2E+02 0.0091 25.2 11.3 46 38-91 72-118 (171)
400 PF12612 TFCD_C: Tubulin foldi 33.7 4.5E+02 0.0099 25.5 11.5 135 351-490 21-159 (193)
401 PF14961 BROMI: Broad-minded p 32.6 1E+03 0.022 30.3 14.7 135 120-257 163-315 (1296)
402 PF07539 DRIM: Down-regulated 31.7 3.6E+02 0.0078 24.6 8.7 30 157-187 15-44 (141)
403 PLN03205 ATR interacting prote 31.6 6.9E+02 0.015 27.0 15.8 180 97-278 302-516 (652)
404 KOG2753 Uncharacterized conser 31.5 6.5E+02 0.014 26.6 16.1 150 417-575 63-216 (378)
405 PF01465 GRIP: GRIP domain; I 30.5 1.4E+02 0.003 21.1 4.5 35 75-110 4-38 (46)
406 KOG2999 Regulator of Rac1, req 29.9 8.3E+02 0.018 27.9 12.2 144 6-152 86-247 (713)
407 PF09759 Atx10homo_assoc: Spin 29.6 2.1E+02 0.0045 24.4 6.2 57 395-452 3-63 (102)
408 PF03542 Tuberin: Tuberin; In 29.3 7.7E+02 0.017 26.8 14.8 142 689-842 141-283 (356)
409 KOG2005 26S proteasome regulat 28.8 1E+03 0.022 28.0 17.6 77 324-409 630-706 (878)
410 cd00864 PI3Ka Phosphoinositide 28.8 4.8E+02 0.01 24.2 11.0 47 37-91 71-118 (152)
411 PF14631 FancD2: Fanconi anaem 28.8 1.5E+03 0.033 30.1 31.9 112 332-447 430-541 (1426)
412 PF11841 DUF3361: Domain of un 28.7 4.9E+02 0.011 24.3 13.7 62 221-282 32-93 (160)
413 COG5209 RCD1 Uncharacterized p 28.6 1.2E+02 0.0026 29.6 5.2 55 809-863 161-217 (315)
414 cd00870 PI3Ka_III Phosphoinosi 28.4 2.3E+02 0.0049 26.8 7.0 78 117-212 45-122 (166)
415 PF06371 Drf_GBD: Diaphanous G 28.2 2.3E+02 0.0049 27.3 7.6 57 349-406 128-186 (187)
416 PF13925 Katanin_con80: con80 27.8 2.2E+02 0.0048 26.8 7.0 59 91-153 41-104 (164)
417 cd03571 ENTH_epsin ENTH domain 27.6 3E+02 0.0064 24.5 7.2 58 100-157 19-78 (123)
418 PF05997 Nop52: Nucleolar prot 27.4 3.9E+02 0.0084 26.6 8.9 88 423-510 4-95 (217)
419 smart00582 RPR domain present 26.8 4.3E+02 0.0094 23.1 8.8 61 383-452 5-65 (121)
420 PF14676 FANCI_S2: FANCI solen 26.5 4.6E+02 0.01 24.5 8.6 27 203-229 129-155 (158)
421 PF08620 RPAP1_C: RPAP1-like, 26.4 1.2E+02 0.0027 23.9 4.0 31 120-150 41-71 (73)
422 KOG2085 Serine/threonine prote 26.2 8.9E+02 0.019 26.5 19.5 305 702-1010 81-434 (457)
423 PF11707 Npa1: Ribosome 60S bi 25.5 8.6E+02 0.019 26.1 21.5 75 208-283 58-148 (330)
424 PF14222 MOR2-PAG1_N: Cell mor 25.5 1.1E+03 0.024 27.5 31.0 406 70-492 27-503 (552)
425 PF08324 PUL: PUL domain; Int 24.9 7.8E+02 0.017 25.4 12.0 196 245-447 16-230 (268)
426 PF10193 Telomere_reg-2: Telom 23.3 5.1E+02 0.011 22.6 8.1 74 423-499 7-89 (114)
427 cd00870 PI3Ka_III Phosphoinosi 23.3 6.4E+02 0.014 23.8 11.0 66 16-91 59-125 (166)
428 PF09759 Atx10homo_assoc: Spin 23.0 4.8E+02 0.01 22.3 7.6 55 354-410 3-62 (102)
429 KOG3678 SARM protein (with ste 21.8 1.1E+03 0.024 26.1 19.8 63 346-408 273-337 (832)
430 cd06561 AlkD_like A new struct 21.5 7.4E+02 0.016 23.9 16.4 65 121-191 108-172 (197)
431 smart00145 PI3Ka Phosphoinosit 21.0 7.6E+02 0.016 23.8 10.7 46 37-90 76-122 (184)
432 PF14868 DUF4487: Domain of un 20.5 1.4E+03 0.03 26.7 28.2 98 314-413 243-341 (559)
433 KOG3613 Dopey and related pred 20.5 3.3E+02 0.0072 35.6 8.2 101 347-447 1497-1620(1749)
434 PF04699 P16-Arc: ARP2/3 compl 20.3 3.4E+02 0.0074 25.1 6.3 58 958-1015 50-110 (152)
435 PF04499 SAPS: SIT4 phosphatas 20.0 1.2E+03 0.026 26.6 12.0 82 21-109 7-93 (475)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-126 Score=1051.31 Aligned_cols=1005 Identities=35% Similarity=0.577 Sum_probs=892.7
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHH
Q 001749 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1018)
Q Consensus 2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 81 (1018)
.++|.|+++++.||||++|++||+.|+....++.....|.+++.+++++++|++|++++||.+.++|+.++.+.++.||.
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks 82 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS 82 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 57899999999999999999999999977766668899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHH
Q 001749 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ 161 (1018)
Q Consensus 82 ~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~ 161 (1018)
.+|..+.+|+.+.||+++|++++.|++..+|. +||+++++++++.+|+++..|+.|+.+|..+.+.++..+.+|++.+.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 99999999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhhcccC-ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001749 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1018)
Q Consensus 162 ~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (1018)
++|.++++| ++..||.+|+++++.++.+.+ ++.....++.++|.+++++...+++++.+....++++|.++++..+++
T Consensus 162 ~lf~q~~~d-~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 162 RLFSQTMTD-PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHhccC-CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 999999999 555599999999999999884 556788999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhc-CChHHHHHHHhhhhccCCCC---------CCC
Q 001749 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCPLLAESNEA---------GED 310 (1018)
Q Consensus 241 ~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~d---------~~d 310 (1018)
+++++.++++++++++.|++.++.+|..|++++.+++++.|.+.++. ++..++++.++.+|++.++| ++|
T Consensus 241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 99999999999999999999999999999999999999999888764 47788999999999876544 123
Q ss_pred CCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC
Q 001749 311 DDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (1018)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d 389 (1018)
+..++...|.+++++++.++| +.++|++++.+..++.|++|+.|+|++++|+.+++||.+.+..++++++++++++|+|
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND 400 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence 336789999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhh-ccccccchHHHHH-HH
Q 001749 390 PEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDES-DEVKEKSYYALAAFCEDM-GEEILPFLDPLMG-KL 465 (1018)
Q Consensus 390 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~-~~v~~~a~~al~~l~~~~-~~~~~~~~~~l~~-~l 465 (1018)
++|+||++||.++|++++.++|.+++++ +.+.|.|+..+.+.. ++|+.+|+.++.+|.+.+ ++.+.||++.+|+ .+
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998755 566668888887764 689999999999999988 6678899999999 55
Q ss_pred HHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhh-hHHHHHHHHHHHHHhhhhhhcCCCh
Q 001749 466 LAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLR-SRARATELLGLVAESVGRARMEPIL 544 (1018)
Q Consensus 466 ~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-~r~~a~~~l~~l~~~~g~~~~~~~~ 544 (1018)
..+++++++.+|+.++.+||+++.++++.|.||++.+||.|++++++.++++.+ +|+++++|++.+++++|++.|.|+.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 566677789999999999999999999999999999999999999988766655 7999999999999999999999999
Q ss_pred HHHHHHHHhcc---CCCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCC
Q 001749 545 PPFVEAAISGF---GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS 621 (1018)
Q Consensus 545 ~~l~~~l~~~l---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1018)
.++|+.++... ..+++..+++.+.+|++||+++|++|.||++.++|.++++++.+++.... +++|+++.++..+++
T Consensus 561 ~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~-d~~d~e~~~~~~~~e 639 (1075)
T KOG2171|consen 561 EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALS-DEEDEEEEQDLDGWE 639 (1075)
T ss_pred HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCc-Cchhhhhccccccch
Confidence 99999998863 34577899999999999999999999999999999999999988765433 333333333333332
Q ss_pred CCcchhhccccc-ceeeecccchhHHHHHHHHHHHHHHccccCcchHHHHHHHh--------------------------
Q 001749 622 SDDEAHCERSVR-NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKIL-------------------------- 674 (1018)
Q Consensus 622 ~~~~~~~~~~~~-~~~i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l-------------------------- 674 (1018)
. .+.+.+ .++|+|+.+++|+.|+.+|+.++..++.+|.||+++++...
T Consensus 640 ~-----~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~ 714 (1075)
T KOG2171|consen 640 V-----VELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTC 714 (1075)
T ss_pred h-----hccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 1 122223 89999999999999999999999999999999999998822
Q ss_pred ---hcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHHHHhhhhh-hcC
Q 001749 675 ---SHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVE-PYMSRLVDATLLLLREEST-CQQ 749 (1018)
Q Consensus 675 ---~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~-~~~~~i~~~l~~~l~~~~~-~~~ 749 (1018)
.-..++..+..+|..+++.++..+..|++.+++..++++++.+++.+|+..+. +.+..+...+...+..... ++.
T Consensus 715 ~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~ 794 (1075)
T KOG2171|consen 715 ALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQD 794 (1075)
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01346678899999999999999999999999999999999999999988764 5666666665554443322 222
Q ss_pred CCCC--CCCCC----cCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHh
Q 001749 750 PDND--SDIED----DDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVAR 823 (1018)
Q Consensus 750 ~~~~--~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~ 823 (1018)
...+ +++++ ++-.|.+..+++.+.+++..+.+..|+.|.++|..++|.+.+++.++.+.. |++|+|+++++++
T Consensus 795 r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ie 873 (1075)
T KOG2171|consen 795 RQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDDLIE 873 (1075)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHH
Confidence 1111 11111 111256778999999999999999999999999999999999999998877 9999999999999
Q ss_pred hcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCC----CCCCchhHhHHH
Q 001749 824 DMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGD----SEPDDAVRDNAA 899 (1018)
Q Consensus 824 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~----~~~~~~~~~na~ 899 (1018)
++|+...+|.+.++|.++.++.|++++||++|+||+|.+++++++.+.+.....++.|..++.. .+++..++||++
T Consensus 874 ~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~ 953 (1075)
T KOG2171|consen 874 GCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAI 953 (1075)
T ss_pred hcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877777777777777654 256778999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhhh----hhhHHHHHHHHHhcCCC-CC
Q 001749 900 GAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILS----LVPELVNLFAEVVVSPE-ES 974 (1018)
Q Consensus 900 ~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~----~~~~il~~~~~~~~~~~-~~ 974 (1018)
+|++||+.++|..+|+++++|.|+++||+.+|.+|+...|++|+.||+++||.+.+ ++|+|+.+++..+.++. ..
T Consensus 954 gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~~~ 1033 (1075)
T KOG2171|consen 954 GAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKIEP 1033 (1075)
T ss_pred HHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999986 99999999999998764 33
Q ss_pred hHHHHHHHHHHHHHHHHhHhhHHHHHhcCCHHHHHHHHhhcC
Q 001749 975 SEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAAFAP 1016 (1018)
Q Consensus 975 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1016 (1018)
+++..+++++++++.. .+++|.++++.||++++.+||.+++
T Consensus 1034 ~~~~~r~~~ilkq~~~-~~~~~~~~~~~L~~~~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1034 RSTLARVIEILKQFLA-PPSQFAALLATLPPDQQQALQAVLN 1074 (1075)
T ss_pred cchHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 4455589999999988 8899999999999999999999875
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-75 Score=604.86 Aligned_cols=807 Identities=20% Similarity=0.316 Sum_probs=666.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHH
Q 001749 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (1018)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~--~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~ 80 (1018)
+++.++|++.+|||+++|+.+...|.++...|+|..+|+.++.. +.+..+|..|+.+|||.++.+|..++++....+|
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 68889999999999999999999999999999999999999875 4578899999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcccc-----c
Q 001749 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-----P 155 (1018)
Q Consensus 81 ~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~-----~ 155 (1018)
..+++.+. ++++.+|...+.+|..|+...+- ..||+++|.+.+++.+++.+..++|+.+|..+||+..+.+. .
T Consensus 93 s~~l~~lg-d~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 93 SECLHGLG-DASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred HHHHhhcc-CchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 99999999 58899999999999999887654 59999999999999999999999999999999999876543 3
Q ss_pred cHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 001749 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (1018)
Q Consensus 156 ~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 235 (1018)
-++-++|.+++..++ +++++|..|+.|+..++-.... .+...+..+++.++...++.++++++..|+.|.-+.+
T Consensus 171 pl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~q-----al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQ-----ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred chHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcH-----HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 567788999999999 8999999999999998876532 3445566777777777889999999999999999999
Q ss_pred CCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhH-HHhhhcCChHHHHHHHhhhhccC----------
Q 001749 236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY-NSLKKHKLVIPILQVMCPLLAES---------- 304 (1018)
Q Consensus 236 ~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~-~~~~~~~~~~~i~~~l~~~l~~~---------- 304 (1018)
..++.+-+|++.++++|++..+ +.++++...|.|||.++++..- +.+. .++++.++|.++.-|.-.
T Consensus 245 vr~dkl~phl~~IveyML~~tq--d~dE~VALEACEFwla~aeqpi~~~~L-~p~l~kliPvLl~~M~Ysd~D~~LL~~~ 321 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQ--DVDENVALEACEFWLALAEQPICKEVL-QPYLDKLIPVLLSGMVYSDDDIILLKNN 321 (885)
T ss_pred hcHHhcccchHHHHHHHHHHcc--CcchhHHHHHHHHHHHHhcCcCcHHHH-HHHHHHHHHHHHccCccccccHHHhcCc
Confidence 9999999999999999998766 4577899999999999998641 1111 137777788777654310
Q ss_pred CC------------------------------C---C--CCC----CCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhh
Q 001749 305 NE------------------------------A---G--EDD----DLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVS 345 (1018)
Q Consensus 305 ~~------------------------------d---~--~d~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~ 345 (1018)
+| | | +|| +|+.|++++.+|+.+++.+|+++++.++|++.+.
T Consensus 322 eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 322 EEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEH 401 (885)
T ss_pred cccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 00 0 1 111 3899999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHH-HHHhhhhHHHHH
Q 001749 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCI 424 (1018)
Q Consensus 346 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l 424 (1018)
+.+++|.+|+++++++|++++||.+.+.++++.++|+++++|.|..+.||..+||+|++++.|.-.+ -.+|+.+++..+
T Consensus 402 L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987443 347899999999
Q ss_pred HHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccch--hhHHHH
Q 001749 425 LNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAERV 502 (1018)
Q Consensus 425 ~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~--~~~~~i 502 (1018)
++.+-|.+.+||++||+|++.+-+..++++.||+..|++.|..+++....+--.-...|||+++..+|.... .|.+-+
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 999999999999999999999999999999999999999999999987666666788999999999997654 477888
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcc
Q 001749 503 LELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFA 582 (1018)
Q Consensus 503 ~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 582 (1018)
||.|.+-+..-++++..+- ..++|++.++.++|. +|.||.+++.+..+..++ .+
T Consensus 562 mPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~-gF~P~~~~Vy~Rc~~il~-----------~t------------- 615 (885)
T KOG2023|consen 562 MPPLIEKWELLSDSDKDLF-PLLECLSSIASALGV-GFLPYAQPVYQRCFRILQ-----------KT------------- 615 (885)
T ss_pred ccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHH-----------HH-------------
Confidence 8877665543322222211 122333333333322 333333322222111100 00
Q ss_pred cchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHcccc
Q 001749 583 QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS 662 (1018)
Q Consensus 583 ~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~~~ 662 (1018)
T Consensus 616 -------------------------------------------------------------------------------- 615 (885)
T KOG2023|consen 616 -------------------------------------------------------------------------------- 615 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHh
Q 001749 663 YAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLR 742 (1018)
Q Consensus 663 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~ 742 (1018)
.+.+.
T Consensus 616 ---------------------------------------------------------------------------~q~~~ 620 (885)
T KOG2023|consen 616 ---------------------------------------------------------------------------LQLLA 620 (885)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 00000
Q ss_pred hhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHH--HHHHHHHhhccCCCccchhhhhHhHHH
Q 001749 743 EESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAK--LFDPLMKFAKSSRPLQDRTMVVATLAE 820 (1018)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~r~~a~~~l~~ 820 (1018)
. .++ ++.. +..|...+-+..|++..+++.+|.+..+.+.+ +...++..+.|..+ .+|++++..+|+
T Consensus 621 ~---~~~---~~~~-----~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~p-eVRQS~FALLGD 688 (885)
T KOG2023|consen 621 K---VQQ---DPTV-----EAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVP-EVRQSAFALLGD 688 (885)
T ss_pred h---ccC---Cccc-----cCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCCh-HHHHHHHHHHHH
Confidence 0 000 0000 00111123344577888888888877776654 88888888888765 679999999999
Q ss_pred HHhhcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHHHH
Q 001749 821 VARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAG 900 (1018)
Q Consensus 821 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~ 900 (1018)
+.+++.+.+.|+...++|.+...+....-++..||+|++|.++.+.+....|++..++..|..+++.+..+..+.+|..-
T Consensus 689 ltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAI 768 (885)
T KOG2023|consen 689 LTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAI 768 (885)
T ss_pred HHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999877777899999999
Q ss_pred HHHHHHHhCCCCC-C-hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhhhhhhHHHHHHHHHhcCCCCChHHH
Q 001749 901 AVARMIMVNPQSI-P-LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVK 978 (1018)
Q Consensus 901 al~~l~~~~~~~~-~-~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~ 978 (1018)
++||+...+|+.+ | ++.++..|+..+....|.+|+..+|+++|.++.-++..+..-+.-+..+++++-. ..++.+
T Consensus 769 TIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~n---p~~~l~ 845 (885)
T KOG2023|consen 769 TIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSN---PEDDLR 845 (885)
T ss_pred hhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccC---hHHHHH
Confidence 9999999999988 5 8999999999999999999999999999999987777788888888999888852 237788
Q ss_pred HHHHHHHHHHHHHhH-hhHHHHHhcCCHHHHHHHHhhcC
Q 001749 979 SQVGMAFSHLISLYG-QQMQPLLSNLSPAHATALAAFAP 1016 (1018)
Q Consensus 979 ~~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~ 1016 (1018)
..+..++..++++.+ ..|++...++||..++.|+..++
T Consensus 846 ~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~erl~a~y~ 884 (885)
T KOG2023|consen 846 DEFYKILQGFKNQVGKINWQRFSEQFPPPLKERLQAFYG 884 (885)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhhcCChhHHHHHHHHhC
Confidence 899999999988875 67999999999999999998875
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-60 Score=499.45 Aligned_cols=782 Identities=21% Similarity=0.331 Sum_probs=612.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcC--CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhh-----------hhhc
Q 001749 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKIT-----------GHWA 69 (1018)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~--p~~~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~-----------~~w~ 69 (1018)
++.++|.+..|||...|++|+++|+++.++ |.|+..|.+++.+. +++..|..|+..|||.+. .+|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 456788889999999999999999999875 68999999999874 578999999999999973 4799
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChH-HHHHHHHHHHHhhhh
Q 001749 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEE-HREVALILFSSLTET 148 (1018)
Q Consensus 70 ~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~-~r~~al~~l~~l~~~ 148 (1018)
.++.+.|+++|..++..|.+ +.+..++.++++++.|+..+.|.+.||++++.+.....++.+. .+++++.++|.+|++
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999996 8899999999999999999999999999999999998876654 889999999999998
Q ss_pred hh-ccccccHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHH
Q 001749 149 IG-QTFRPHFADMQALLLKCLQ-DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIA 226 (1018)
Q Consensus 149 ~~-~~~~~~~~~l~~~l~~~l~-d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a 226 (1018)
.. +.+....+.++..+..+.. .+++..||.+|++||.+.+++....+....-+++ ++++..+..+.+|.+++.+|
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~---iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY---IMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce---eeeeeeecccCCcHHHHHHH
Confidence 64 4556677778777766664 4478899999999999999888654444444444 44444456677889999999
Q ss_pred HHHHHHHhcCCccchhHhHHH-HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHH-------Hhhh--c--------C
Q 001749 227 FEIFDELIESPAPLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN-------SLKK--H--------K 288 (1018)
Q Consensus 227 ~~~l~~l~~~~~~~~~~~~~~-li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~-------~~~~--~--------~ 288 (1018)
+.||.++....+.++.+++.+ ++...+..+.+ .++++..+++|||+++++..-. ...+ + .
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amks--~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS--DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999999998877 77776666663 4789999999999988864322 1111 0 1
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcC
Q 001749 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (1018)
Q Consensus 289 ~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 368 (1018)
-++.++|.++..|+..++++++|+|++.++|..||..++...|+.++++++|++.+.+++++|+.|++|.+++|++.+|.
T Consensus 316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 23467889999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHH--HHhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 001749 369 -AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (1018)
Q Consensus 369 -~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (1018)
++.+.+...+.+|.++..+.|++..||.++.|++|++++.++..+ ..++..+++.++..|.|. |+|...+||++..
T Consensus 396 ~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~ 474 (859)
T KOG1241|consen 396 EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFIS 474 (859)
T ss_pred chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHH
Confidence 466778889999999999999999999999999999999987544 357889999999999985 7999999999999
Q ss_pred HHhhhcc---------ccccchHHHHHHHHHhhcC---CCHhHHHHHHHHHHHHHHHhhccchhhHHH----HHHHHHHH
Q 001749 446 FCEDMGE---------EILPFLDPLMGKLLAALEN---SPRNLQETCMSAIGSVAAAAEQAFIPYAER----VLELLKIF 509 (1018)
Q Consensus 446 l~~~~~~---------~~~~~~~~l~~~l~~~l~~---~~~~vr~~al~al~~l~~~~~~~~~~~~~~----i~~~l~~~ 509 (1018)
+++.+.+ ...||++.|+..|++..+. ++.++|..+.++++.++..+++...|.... ++..|.+.
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~ 554 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQT 554 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9977632 2447999999999998766 467899999999999999999876654433 44444445
Q ss_pred Hhc--cC--ch-h-hhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCC-CChhHHHHHHHHHHHHHHHcccCcc
Q 001749 510 MVL--TN--DE-D-LRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL-EFSELREYTHGFFSNIAGVLEDGFA 582 (1018)
Q Consensus 510 l~~--~~--~~-~-~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~ 582 (1018)
++. .+ +. . ..+.+....+++.+.+.+|+ .+.++.+.+|..++..++. .+..+.+.++.+++.++..+|..|.
T Consensus 555 i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 555 ISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred HHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 541 11 11 1 12444555778888888887 8889999999999999886 4666889999999999999999999
Q ss_pred cchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHcccc
Q 001749 583 QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS 662 (1018)
Q Consensus 583 ~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~~~ 662 (1018)
.|+|.+.|+|...++.-. .-..=..|+...|+++..++..
T Consensus 634 kym~~f~pyL~~gL~n~~----------------------------------------e~qVc~~aVglVgdl~raL~~~ 673 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQ----------------------------------------EYQVCAAAVGLVGDLARALEDD 673 (859)
T ss_pred HHHHHHHHHHHHHhhcch----------------------------------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998774210 0122557889999999999999
Q ss_pred CcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhC-CcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Q 001749 663 YAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTED-DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLL 741 (1018)
Q Consensus 663 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e-~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l 741 (1018)
|.||.+.++.. |++.+.++ -++++.-..+.+++++--..|.. +.+|+..++ .++
T Consensus 674 i~py~d~~mt~--------------------Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~-F~~Yl~~vm----~ll 728 (859)
T KOG1241|consen 674 ILPYCDELMTV--------------------LVQCLSSPNLHRNVKPAILSVFGDIALAIGAD-FEPYLEMVM----PLL 728 (859)
T ss_pred hhhHHHHHHHH--------------------HHHHccCccccccccchHHHHHHHHHHHHHHh-HHHHHHHHH----HHH
Confidence 99999986654 55555443 35566667788888887777754 355665555 444
Q ss_pred hhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCC-----ChHHHHHHHHHHHHHhhccCC-Cccchhhhh
Q 001749 742 REESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP-----HFAPIFAKLFDPLMKFAKSSR-PLQDRTMVV 815 (1018)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~l~~~l~~~~-~~~~r~~a~ 815 (1018)
+.....+...+ +.+..++-..+++.+.+....+...++. ...||++.|+..+-+.-.++. +......|+
T Consensus 729 q~as~~~~d~~-----~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~ 803 (859)
T KOG1241|consen 729 QQASSVQTDPA-----DDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAAL 803 (859)
T ss_pred HHHHhccCCCC-----cccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHH
Confidence 44332222221 1222345556777777777777777773 234677777766655544433 244567899
Q ss_pred HhHHHHHhhcCcchHhhH-H-h-hHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 001749 816 ATLAEVARDMGSPIAAYV-D-R-VMPLVLKELASPDAMNRRNAAFCVGELC 863 (1018)
Q Consensus 816 ~~l~~~~~~~~~~~~~~~-~-~-l~~~l~~~l~~~~~~vr~~a~~~lg~l~ 863 (1018)
|.+||++..+|....+++ . . +-..+.++.+......|..|-|+.-.+-
T Consensus 804 GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ik 854 (859)
T KOG1241|consen 804 GLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIK 854 (859)
T ss_pred HHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999997765532 2 2 3334444555667777777777765553
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.7e-49 Score=401.81 Aligned_cols=762 Identities=18% Similarity=0.237 Sum_probs=566.7
Q ss_pred HHHHHHHHHh-cCCChHHHHHHHHHHHHHhcCC--CcHHHHHHHHhc-CCChhHHHHHHHHHHHhhh-----------hh
Q 001749 3 QSLELLLIQF-LMPDNDARRQAEDQIKRLAKDP--QVVPALVQHLRT-AKTPNVRQLAAVLLRKKIT-----------GH 67 (1018)
Q Consensus 3 ~~l~~~l~~~-~s~d~~~r~~A~~~L~~~~~~p--~~~~~l~~~l~~-~~~~~~R~~a~~~l~~~i~-----------~~ 67 (1018)
.++.++.++. +|||++.|..||.+|.++.+.. .|+..+.+.+++ .++++.|..|++.|||.+. ..
T Consensus 4 ~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qr 83 (858)
T COG5215 4 SEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQR 83 (858)
T ss_pred HHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHh
Confidence 4566777774 8999999999999999998764 578889999987 5689999999999999973 47
Q ss_pred hccCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCCh-HHHHHHHHHHHHhh
Q 001749 68 WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLT 146 (1018)
Q Consensus 68 w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~-~~r~~al~~l~~l~ 146 (1018)
|..++.|.++++|...++.|.+ +.+...+.+++.++.|++.+.|.+.||+++..+....-.+.+ ..+..++.+++.+|
T Consensus 84 W~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 84 WLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred hccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 9999999999999999999996 899999999999999999999999999999999998877655 56778999999999
Q ss_pred hhhhc-cccccHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHH
Q 001749 147 ETIGQ-TFRPHFADM-QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAV 224 (1018)
Q Consensus 147 ~~~~~-~~~~~~~~l-~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~ 224 (1018)
+...+ .+....+.+ +.++...++.+++..||.+|++||..-+.+....+....-+ ..++++..+..+.++.++..
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~er---Ny~mqvvceatq~~d~e~q~ 239 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEER---NYFMQVVCEATQGNDEELQH 239 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhh---chhheeeehhccCCcHHHHH
Confidence 87644 444444544 46666667776888999999999998655553322222222 33555555567778899999
Q ss_pred HHHHHHHHHhcCCccchhHhHHHHHH-HHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHH------h-----hhcCC---
Q 001749 225 IAFEIFDELIESPAPLLGDSVKSIVH-FSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS------L-----KKHKL--- 289 (1018)
Q Consensus 225 ~a~~~l~~l~~~~~~~~~~~~~~li~-~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~------~-----~~~~~--- 289 (1018)
.++.||.++.....++++++++..+- +..+.+.+ .++++..++++||+++++..-.. + ++.+|
T Consensus 240 aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks--~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~a 317 (858)
T COG5215 240 AAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS--QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARA 317 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHH
Confidence 99999999999988988888877554 33445554 47899999999999988743221 1 11122
Q ss_pred -hHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcC
Q 001749 290 -VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (1018)
Q Consensus 290 -~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 368 (1018)
+..++|.++.+|+..++|.++|+|++..+|..||..+++..|+.++.+++.++.+.+.+++|+.|++|.+++|.+.++.
T Consensus 318 av~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 318 AVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred h-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHH--hhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 001749 369 A-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYALAA 445 (1018)
Q Consensus 369 ~-~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (1018)
. ....+++++.+|.|...+.|+...|..++.||+|+++.+....+.+ |+.......+-++.|. +++...+++...+
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~n 476 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKEN 476 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHh
Confidence 4 4555678999999999999999999999999999999998665543 6777788888787774 6888899999999
Q ss_pred HHhhhcc-------ccccchHHHHHHHHHhhc--CCCHhHHHHHHHHHHHHHHHhhccchhhHHH----HHHHHHHHHhc
Q 001749 446 FCEDMGE-------EILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIPYAER----VLELLKIFMVL 512 (1018)
Q Consensus 446 l~~~~~~-------~~~~~~~~l~~~l~~~l~--~~~~~vr~~al~al~~l~~~~~~~~~~~~~~----i~~~l~~~l~~ 512 (1018)
+++++.+ .+.++++.++..|++..+ .++.+.|..+.+++|.++..+++...+.+.. ++..+.+.++.
T Consensus 477 lv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv 556 (858)
T COG5215 477 LVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISV 556 (858)
T ss_pred HHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987743 345788888888887644 3578899999999999999998766554433 33333333332
Q ss_pred cC----chhh----hhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHcccCccc
Q 001749 513 TN----DEDL----RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE-FSELREYTHGFFSNIAGVLEDGFAQ 583 (1018)
Q Consensus 513 ~~----~~~~----~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~l~~l~~~~~~~~~~ 583 (1018)
.. -++. ++....+..+..+.+..++ .+.+....+|+.++..++.. ...+...++.+++.+...+++.|..
T Consensus 557 ~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~-~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~ 635 (858)
T COG5215 557 LGQILATEDQLLVEELQSNYIGVLEAIIRTRRR-DIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQ 635 (858)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 11 0111 1333444555555555544 56677778999999888865 4456788999999999999999999
Q ss_pred chhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHccccC
Q 001749 584 YLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSY 663 (1018)
Q Consensus 584 ~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~~~~ 663 (1018)
|++.++|.+.+.++..+ -..-..|+..+|+++..++..|
T Consensus 636 y~~~fiPyl~~aln~~d-----------------------------------------~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 636 YASKFIPYLTRALNCTD-----------------------------------------RFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred HHhhhhHHHHHHhcchh-----------------------------------------HHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999998874321 0125678999999999999999
Q ss_pred cchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhC-CcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHh
Q 001749 664 APFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTED-DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLR 742 (1018)
Q Consensus 664 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e-~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~ 742 (1018)
.||.+.++.. |.+++.++ .++++.-..+.+++++-...|.. +.+|++.++ -++.
T Consensus 675 ~~y~d~~ms~--------------------LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~-F~~YL~~im----~L~q 729 (858)
T COG5215 675 NIYADVLMSS--------------------LVQCLSSEATHRDLKPAILSVFGDIALAIGAN-FESYLDMIM----MLFQ 729 (858)
T ss_pred HHHHHHHHHH--------------------HHHHhcChhhccccchHHHHHHHHHHHHHhhh-HHHHHHHHH----HHHH
Confidence 9999886654 44555433 34566667778888888777765 456776655 3333
Q ss_pred hhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCC---ChHHHHHHHHHHHHHhhccCCC-ccchhhhhHhH
Q 001749 743 EESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP---HFAPIFAKLFDPLMKFAKSSRP-LQDRTMVVATL 818 (1018)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~~~-~~~r~~a~~~l 818 (1018)
.....+ .+++ .-+-.+++..++..+.+..-.+.....+ ...||+..+...+...-.|.+- ....+.++|.+
T Consensus 730 qas~~~-p~~~----~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLi 804 (858)
T COG5215 730 QASELD-PHSD----EVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLI 804 (858)
T ss_pred HHhccC-CCCC----ceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHH
Confidence 322111 1111 1111234444444444444444444443 3446666666655555555443 22235899999
Q ss_pred HHHHhhcCcc-hH-----hhHHhhHHHHHHh
Q 001749 819 AEVARDMGSP-IA-----AYVDRVMPLVLKE 843 (1018)
Q Consensus 819 ~~~~~~~~~~-~~-----~~~~~l~~~l~~~ 843 (1018)
|+++...|.. ++ .|+..++....+.
T Consensus 805 gDla~mfpkgelk~~~~~dWv~d~l~~~~~k 835 (858)
T COG5215 805 GDLAGMFPKGELKFGLDEDWVKDFLYGMMKK 835 (858)
T ss_pred HHHHHhCCCcchhhccchHHHHHHHHHHHHH
Confidence 9999988765 22 3555555555443
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-37 Score=343.03 Aligned_cols=811 Identities=19% Similarity=0.258 Sum_probs=543.2
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHhcC--CCcHHHHHHHH---hcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHH
Q 001749 7 LLLIQFL-MPDNDARRQAEDQIKRLAKD--PQVVPALVQHL---RTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (1018)
Q Consensus 7 ~~l~~~~-s~d~~~r~~A~~~L~~~~~~--p~~~~~l~~~l---~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~ 80 (1018)
++|..++ .+...+|++--....++.++ |+-|+-|++.+ .+++++..|.+|..+|.......-..+. .....++
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~-~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ-PHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc-hhHHHHH
Confidence 4455554 35677888777777666543 33344444443 2467899999999999887654333322 3556788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHcccC-CCCCc---cchHHHHHH----hhcCCChHHHHHHHHHHHHhhhhhhcc
Q 001749 81 QSLIESITLEHSAPVRRASANVVSIIAKYAV-PAGEW---PDLLPFLFQ----FSQSEQEEHREVALILFSSLTETIGQT 152 (1018)
Q Consensus 81 ~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~-~~~~w---~~ll~~l~~----~~~s~~~~~r~~al~~l~~l~~~~~~~ 152 (1018)
..+.+++.. ++..||..++++++.++.... ....| ..++|.++. .++.++......++.+|..+.+..++.
T Consensus 162 ~lf~q~~~d-~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 162 RLFSQTMTD-PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHhccC-CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 899999985 555599999999999887542 11233 334555444 455566677789999999999999999
Q ss_pred ccccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001749 153 FRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFD 231 (1018)
Q Consensus 153 ~~~~~~~l~~~l~~~l~d~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~ 231 (1018)
+.+++.+++.+......+. -+..+|..|+.++..++++.+ ...++..++.+.++..+...+.+...+ .-|.
T Consensus 241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap--~~~k~~~~~~~~lv~~~l~~mte~~~D------~ew~ 312 (1075)
T KOG2171|consen 241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP--AMCKKLALLGHTLVPVLLAMMTEEEDD------DEWS 312 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH--HHhhhchhhhccHHHHHHHhcCCcccc------hhhc
Confidence 9999999999999888762 377899999999999999843 223333445555555544444432211 0000
Q ss_pred HHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhH-HHhhhcCChHHHHHHHhhhhccCCCCCCC
Q 001749 232 ELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY-NSLKKHKLVIPILQVMCPLLAESNEAGED 310 (1018)
Q Consensus 232 ~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~-~~~~~~~~~~~i~~~l~~~l~~~~~d~~d 310 (1018)
+ .+ ... .+..+.....|.+.+..++..-+ +.+- +++++.+-.++..
T Consensus 313 ~-----~d---------------~~d-ed~~~~~~~~A~~~lDrlA~~L~g~~v~-----p~~~~~l~~~l~S------- 359 (1075)
T KOG2171|consen 313 N-----ED---------------DLD-EDDEETPYRAAEQALDRLALHLGGKQVL-----PPLFEALEAMLQS------- 359 (1075)
T ss_pred c-----cc---------------ccc-cccccCcHHHHHHHHHHHHhcCChhheh-----HHHHHHHHHHhcC-------
Confidence 0 00 000 00111122222333333322221 2221 1223333333332
Q ss_pred CCCcHHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHH-HHHHHHhh
Q 001749 311 DDLAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES-VLHIVLGA 386 (1018)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~-l~~~l~~~ 386 (1018)
.+|..|+++..+++.+++.++ ...++.+++.+...++|+++++|+||+.++|+++......+..+..+ +.+.+...
T Consensus 360 ~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ 439 (1075)
T KOG2171|consen 360 TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL 439 (1075)
T ss_pred CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH
Confidence 236777777777777777766 34567888999999999999999999999999999988777776555 45578888
Q ss_pred cCCC-ChhHHHHHHHHHHHhHhhcCH-HHHHhhhhHHHHHH-HhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHH
Q 001749 387 LRDP-EQFVRGAASFALGQFAEYLQP-EIVSHYESVLPCIL-NALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMG 463 (1018)
Q Consensus 387 l~d~-~~~Vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~-~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~ 463 (1018)
+.++ +++|+..|+-++-.+++.+.. .+.+|++.++...+ ..++++.+.|++.+..+|+..+...++.+.||++.+|+
T Consensus 440 ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp 519 (1075)
T KOG2171|consen 440 LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMP 519 (1075)
T ss_pred hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 8765 789999999999988887754 45789999999554 45556667899999999999999999999999999999
Q ss_pred HHHHhhcCCC----HhHHHHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhh
Q 001749 464 KLLAALENSP----RNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (1018)
Q Consensus 464 ~l~~~l~~~~----~~vr~~al~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~ 538 (1018)
.|...+++.+ ..+|...+.|++.++.++| +.|.|+..+++..+...-....+.+..+|...+..++.+++.+|+
T Consensus 520 ~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~- 598 (1075)
T KOG2171|consen 520 LLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGD- 598 (1075)
T ss_pred HHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhch-
Confidence 9999998764 6788999999999999998 789999999999888765333334445788899999999999987
Q ss_pred hcCCChHHHHHHHHhccCCC--------------------------Ch----------hHHHHHHHHHHHHHHHcccCcc
Q 001749 539 RMEPILPPFVEAAISGFGLE--------------------------FS----------ELREYTHGFFSNIAGVLEDGFA 582 (1018)
Q Consensus 539 ~~~~~~~~l~~~l~~~l~~~--------------------------~~----------~~~~~~~~~l~~l~~~~~~~~~ 582 (1018)
.|.||++.+|+.++...+.+ +. +-++.++..++.++...+..|.
T Consensus 599 ~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~ 678 (1075)
T KOG2171|consen 599 DFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFA 678 (1075)
T ss_pred hhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 89999999999887754311 00 1256788899999999999999
Q ss_pred cchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHcccc
Q 001749 583 QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS 662 (1018)
Q Consensus 583 ~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~~~ 662 (1018)
||+..+++..+-.+..... ...|.+|++++..+.......
T Consensus 679 pYve~v~~l~v~~l~f~fh----------------------------------------dgVR~aa~~~~p~ll~~~~~A 718 (1075)
T KOG2171|consen 679 PYVEQVVELMVPLLKFYFH----------------------------------------DGVRKAAAESMPQLLTCALKA 718 (1075)
T ss_pred hHHHHHHHHHHHHHHhhhh----------------------------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999944443321100 012777788777776654431
Q ss_pred Cc---chHH--------HHHHHhhcCCC------------------------hhHHHHHHHHHHHHHHHHH---------
Q 001749 663 YA---PFLE--------ESLKILSHNEG------------------------PAKAREILDTVMNIFIRTM--------- 698 (1018)
Q Consensus 663 ~~---p~~~--------~~~~~l~~~~~------------------------~~~~~~~~~~~~~~l~~~l--------- 698 (1018)
.. -|+. ..++.+..... ......+...+...+....
T Consensus 719 ~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~ 798 (1075)
T KOG2171|consen 719 CQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEE 798 (1075)
T ss_pred hccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 11 1222 22222211111 1122222222211111111
Q ss_pred --hhC-----------CcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhh
Q 001749 699 --TED-----------DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHD 765 (1018)
Q Consensus 699 --~~e-----------~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1018)
.+| .+..........+..+.+..+.. +.+.+..+.+.+...+.++.+. + +
T Consensus 799 ~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~-f~p~f~~~~p~iv~~l~~~~~~---------------~-r 861 (1075)
T KOG2171|consen 799 DDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGS-FLPFFENFLPLIVKLLKSKKTV---------------A-R 861 (1075)
T ss_pred hhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHhcCCcH---------------H-H
Confidence 001 11112223334444444444433 4566777777777777663321 1 2
Q ss_pred HHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcC
Q 001749 766 EVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA 845 (1018)
Q Consensus 766 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~ 845 (1018)
+--+. +++.++...|+...+|+..++|.++.++.+..+ ++|+.|.+.+|.+.+++|..+.+.....+|.+...+.
T Consensus 862 ~~av~----~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~p-EVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq 936 (1075)
T KOG2171|consen 862 QWAVC----IFDDLIEGCGEASAKYKERFLPLVLEALQDSDP-EVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ 936 (1075)
T ss_pred HHHHH----HHHHHHHhcccccchHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence 22223 344455577888889999999999999998876 7799999999999999999988888888888888877
Q ss_pred CC------ChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCC--Chhh
Q 001749 846 SP------DAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI--PLNQ 917 (1018)
Q Consensus 846 ~~------~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~ 917 (1018)
.+ +.....||+.++++++.+.+..+ | ++++++.+...++..+ |..-.--....++.++..++..+ |.++
T Consensus 937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i-~-vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n~ 1013 (1075)
T KOG2171|consen 937 PPLARTEENRRATENAIGAIAKILLFNPNRI-P-VDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNNQ 1013 (1075)
T ss_pred ChhhhhHHHhHHHHHHHHHHHHHHHhCCccC-c-HHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCcc
Confidence 54 44588999999999999988654 3 7777777767766432 11111224567888888765444 3666
Q ss_pred HHHHHHhhC
Q 001749 918 VLPVLLKVL 926 (1018)
Q Consensus 918 ~l~~~l~~l 926 (1018)
.+|.++..+
T Consensus 1014 ~ip~i~~v~ 1022 (1075)
T KOG2171|consen 1014 NIPKILSVC 1022 (1075)
T ss_pred cchHHHHHH
Confidence 777666543
No 6
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=293.13 Aligned_cols=469 Identities=22% Similarity=0.321 Sum_probs=353.2
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhhcc---------
Q 001749 1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAK--------- 70 (1018)
Q Consensus 1 m~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~-~~~~R~~a~~~l~~~i~~~w~~--------- 70 (1018)
|.+.+.+++.+...+|+..|+.||++|+++.++|+|+..+++++.+.. +..+|+.|+++|||.|.+.|+.
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~ 81 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFG 81 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCC
Confidence 467899999999999999999999999999999999999999998754 6788999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhh
Q 001749 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (1018)
Q Consensus 71 l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 150 (1018)
+.++.+..+|+.++..+.+ .+..+|.+...++..|...++| +.||.+++.+...+++++.....+|+.++..+++...
T Consensus 82 I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 82 IPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred CChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 4688999999999999997 6889999999999999999999 6999999999999999999999999999999997653
Q ss_pred -----------ccccccHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHhhcccCCh--hhHHHHHhhHHHHHHHHHHHh
Q 001749 151 -----------QTFRPHFADMQALLLKCLQDE--TSNRVRIAALKAIGSFLEFTNDG--AEVVKFREFIPSILNVSRQCL 215 (1018)
Q Consensus 151 -----------~~~~~~~~~l~~~l~~~l~d~--~~~~vr~~a~~~l~~~~~~~~~~--~~~~~~~~~~~~ll~~l~~~l 215 (1018)
..+...++.++..+.+.+..+ .+.+..+..++.+-.++.+.-.. .....|...+...+.++.+-+
T Consensus 160 ~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 160 WKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 123345566677777777662 23344555566555554432111 112233444444444432222
Q ss_pred hc----CCH---------HHHHHHHHHHHHHhcCCc--------------cchhHhHHHHHHHHHHHh----cCCCCChH
Q 001749 216 AS----GEE---------DVAVIAFEIFDELIESPA--------------PLLGDSVKSIVHFSLEVS----SSHNLEPN 264 (1018)
Q Consensus 216 ~~----~~~---------~~~~~a~~~l~~l~~~~~--------------~~~~~~~~~li~~l~~~~----~~~~~~~~ 264 (1018)
.. -++ ...+.|+..|.++.+... -++..+.+.+++..++++ .....+++
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 10 122 356788888888876431 122344555555555443 22346788
Q ss_pred HHHHHHHHHHHHHHHhHHHh-hhcCChHHHHHHHhhhhccCCCCCC-----------------CCCCcHHHHHHHHHHHH
Q 001749 265 TRHQAIQIISWLAKYKYNSL-KKHKLVIPILQVMCPLLAESNEAGE-----------------DDDLAPDRAAAEVIDTM 326 (1018)
Q Consensus 265 ~r~~a~~~l~~~~~~~~~~~-~~~~~~~~i~~~l~~~l~~~~~d~~-----------------d~~~~~~~~a~~~l~~l 326 (1018)
+-..++.|+..++..+..+- .++++-.-+...++|+|+-.++|.+ +|-.+++.+|..++-.+
T Consensus 320 vl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~ 399 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTL 399 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHH
Confidence 88899999999987654432 1222233445788999997765532 23357788899999999
Q ss_pred HHHcchhchHHHHHHHHhhhc--------CCChhHHHHHHHHHHHHhhcCh--HHHHHhHHH-HHHHHHhhcCCCChhHH
Q 001749 327 ALNLAKHVFPPVFEFASVSCQ--------NASPKYREAAVTAIGIISEGCA--EWMKEKLES-VLHIVLGALRDPEQFVR 395 (1018)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~l~--------~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~-l~~~l~~~l~d~~~~Vr 395 (1018)
+...|++.++.+++++.+.+. ..+++.+++|++++|++++... +.++..++. +++.+++.++++-...|
T Consensus 400 ~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lr 479 (1010)
T KOG1991|consen 400 VSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLR 479 (1010)
T ss_pred HHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHH
Confidence 999999999999999887765 3578999999999999997543 345556665 45689999999999999
Q ss_pred HHHHHHHHHhH-hhcCHHHHHhhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhhc---cccccchHHHHHHHHHhhc
Q 001749 396 GAASFALGQFA-EYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMG---EEILPFLDPLMGKLLAALE 470 (1018)
Q Consensus 396 ~~a~~~l~~l~-~~~~~~~~~~~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~---~~~~~~~~~l~~~l~~~l~ 470 (1018)
..|||.+++++ ..++. ...+.+.+....++|. |++-.|+..|+-||..|+.+.. ..+.++++++|+.|+++.+
T Consensus 480 arac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 480 ARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 99999999999 45543 3456778888888888 6667799999999999999885 4488999999999988876
Q ss_pred CCC
Q 001749 471 NSP 473 (1018)
Q Consensus 471 ~~~ 473 (1018)
..+
T Consensus 558 e~E 560 (1010)
T KOG1991|consen 558 EVE 560 (1010)
T ss_pred hcc
Confidence 543
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=5e-30 Score=277.20 Aligned_cols=941 Identities=16% Similarity=0.153 Sum_probs=594.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHH-HHhcC---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHH
Q 001749 7 LLLIQFLMPDNDARRQAEDQIK-RLAKD---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (1018)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~-~~~~~---------p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~ 76 (1018)
++++...|+|...|-.|+..|. ++.++ +..+..+++.+. ..+.+++..|.-.+.-.. +++.....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lv----sKvke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLV----SKVKEDQL 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHH----hhchHHHH
Confidence 7888899999999999999984 56543 234667777775 457899999987776665 34566778
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCC-------CCccchHHHHHHhhcCC--ChHHHHHHHHHHHHhhh
Q 001749 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-------GEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTE 147 (1018)
Q Consensus 77 ~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-------~~w~~ll~~l~~~~~s~--~~~~r~~al~~l~~l~~ 147 (1018)
..+.+.|...+.+ .....|...+-.+........|. ...+.++|.+.+.+... ....+.-++.+++.+..
T Consensus 84 e~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 ETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 8888888888775 44555655555554433322221 23466667777666432 23467788888888888
Q ss_pred hhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhc-CCHHHHHHH
Q 001749 148 TIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-GEEDVAVIA 226 (1018)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~a 226 (1018)
.++..+.++...++..+..-+.. +...||+.|+.+++.++.+.+. ..+..++..++.. +.. ..+...+.-
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s-~R~aVrKkai~~l~~la~~~~~----~ly~~li~~Ll~~----L~~~~q~~~~rt~ 233 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQS-PRLAVRKKAITALGHLASSCNR----DLYVELIEHLLKG----LSNRTQMSATRTY 233 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccC-hHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhc----cCCCCchHHHHHH
Confidence 88887777667777777777777 7788999999999999988853 2334444444443 432 344556667
Q ss_pred HHHHHHHhcCCccchhHhHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccC-
Q 001749 227 FEIFDELIESPAPLLGDSVKSIVHFSLEVSSS-HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAES- 304 (1018)
Q Consensus 227 ~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~-~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~- 304 (1018)
+++|..+.......++.|++.+++++.+.++. +..+++.|..+++.+..+....|..+.+ +.+.+...++..++..
T Consensus 234 Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p--~~pei~~l~l~yisYDP 311 (1233)
T KOG1824|consen 234 IQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILP--HVPEIINLCLSYISYDP 311 (1233)
T ss_pred HHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcc--cchHHHHHHHHHhccCC
Confidence 78888888888888888888888888877732 2347799999999999999988876654 7888888888776521
Q ss_pred -----C-CC--------------------CCCCCCcHHHHHHHHHHHHHHHcch-------hchHHHHH-----------
Q 001749 305 -----N-EA--------------------GEDDDLAPDRAAAEVIDTMALNLAK-------HVFPPVFE----------- 340 (1018)
Q Consensus 305 -----~-~d--------------------~~d~~~~~~~~a~~~l~~l~~~~~~-------~~~~~~~~----------- 340 (1018)
+ || |||-.|.+|++|..|+..+.....+ .+-|.++.
T Consensus 312 Ny~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~ 391 (1233)
T KOG1824|consen 312 NYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKA 391 (1233)
T ss_pred CCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHH
Confidence 0 10 1111388999999998876532210 00111111
Q ss_pred -----------------------------------------------HHHhhhcCCChhHHHHHHHHHHHHhhcChHHHH
Q 001749 341 -----------------------------------------------FASVSCQNASPKYREAAVTAIGIISEGCAEWMK 373 (1018)
Q Consensus 341 -----------------------------------------------~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~ 373 (1018)
.+.+.+++...+.|..++..+..+....++...
T Consensus 392 dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~ 471 (1233)
T KOG1824|consen 392 DVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA 471 (1233)
T ss_pred HHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh
Confidence 111111122234455666666666666667777
Q ss_pred HhHHHHHHHHHhhcCCCC--hhHHHHHHHHHH-HhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 374 EKLESVLHIVLGALRDPE--QFVRGAASFALG-QFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 374 ~~l~~l~~~l~~~l~d~~--~~Vr~~a~~~l~-~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
++++.++|.|...|.|.+ ...+..++-++. .++.+-++.+.++.+.+.|.+..+..++-+.+...|......+++..
T Consensus 472 ~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi 551 (1233)
T KOG1824|consen 472 QHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI 551 (1233)
T ss_pred hcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh
Confidence 889999999999999864 344555554444 44555556677899999999999999999999999999999999876
Q ss_pred c-------cccccchHHHHHHHHHhhcCC--CHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhH
Q 001749 451 G-------EEILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSR 521 (1018)
Q Consensus 451 ~-------~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r 521 (1018)
. -...||+..+....++.+... +.+||+.|+.|+|.++...|+.....++.++|++..-+++. -.|
T Consensus 552 rpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE-----iTR 626 (1233)
T KOG1824|consen 552 RPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE-----ITR 626 (1233)
T ss_pred cccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch-----hHH
Confidence 2 235689999999888888664 78999999999999999999888889999999998877643 246
Q ss_pred HHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccchh-hhhHHHHhhccCCC
Q 001749 522 ARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLP-LVVPLAFSSCNLDD 600 (1018)
Q Consensus 522 ~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~ll~~~~~~~ 600 (1018)
-.|+.+++.++.+.-.-...|.+..+++.+.+.+......+|...+.++..+.+.+++.+.+++- .++..+...+...+
T Consensus 627 l~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesd 706 (1233)
T KOG1824|consen 627 LTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESD 706 (1233)
T ss_pred HHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHH
Confidence 67888888888654333456778888888888777667788999999999999999998877643 23222222221100
Q ss_pred CCccCCCCCchhhccc-CCCCC-CCcchhhccccccee-eecccchhHHHHHHHHHHHHHH---ccccCcchHHHHHHHh
Q 001749 601 GSAVDIDGSDDENING-FGGVS-SDDEAHCERSVRNIS-VRTGVLDEKAAATQALGLFALH---TKSSYAPFLEESLKIL 674 (1018)
Q Consensus 601 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-i~t~~~~~k~~a~~~l~~~~~~---~~~~~~p~~~~~~~~l 674 (1018)
-. ..+..-.-... +-... .--.........-++ ++++.+ .-.|..++-.+... .+..-.+|.. .+..+
T Consensus 707 lh---vt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spll--qg~al~~~l~~f~alV~t~~~~l~y~~-l~s~l 780 (1233)
T KOG1824|consen 707 LH---VTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLL--QGGALSALLLFFQALVITKEPDLDYIS-LLSLL 780 (1233)
T ss_pred HH---HHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccc--cchHHHHHHHHHHHHHhcCCCCccHHH-HHHHH
Confidence 00 00000000000 00000 000000000000000 111111 11122222222111 1111122211 11111
Q ss_pred h-----------------------------cC-CChhHHHHHH--------------------------------HHHHH
Q 001749 675 S-----------------------------HN-EGPAKAREIL--------------------------------DTVMN 692 (1018)
Q Consensus 675 ~-----------------------------~~-~~~~~~~~~~--------------------------------~~~~~ 692 (1018)
. .+ .+...+.++. ..+..
T Consensus 781 t~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~ 860 (1233)
T KOG1824|consen 781 TAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKD 860 (1233)
T ss_pred cCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHH
Confidence 0 00 0000000000 01112
Q ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH--------------HHhhhhhhcCCCCCCC-CC
Q 001749 693 IFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLL--------------LLREESTCQQPDNDSD-IE 757 (1018)
Q Consensus 693 ~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~--------------~l~~~~~~~~~~~~~~-~~ 757 (1018)
.+++.++ .+..++...+-.+++.+ +...+..|++.++..+.. ++............++ .+
T Consensus 861 ~iieaf~-sp~edvksAAs~ALGsl----~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~ 935 (1233)
T KOG1824|consen 861 TIIEAFN-SPSEDVKSAASYALGSL----AVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWA 935 (1233)
T ss_pred HHHHHcC-CChHHHHHHHHHHhhhh----hcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 2233332 34555555555555543 222233444444433221 1111100000000000 00
Q ss_pred C--cCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHh
Q 001749 758 D--DDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDR 835 (1018)
Q Consensus 758 ~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~ 835 (1018)
. .+-+-.++..+..+++|+|.++-.- -+.++|.+-..++++.+ ..|..++..+...+.--++.+.+++.+
T Consensus 936 lL~k~cE~~eegtR~vvAECLGkL~l~e-------pesLlpkL~~~~~S~a~-~~rs~vvsavKfsisd~p~~id~~lk~ 1007 (1233)
T KOG1824|consen 936 LLFKHCECAEEGTRNVVAECLGKLVLIE-------PESLLPKLKLLLRSEAS-NTRSSVVSAVKFSISDQPQPIDPLLKQ 1007 (1233)
T ss_pred HHHHhcccchhhhHHHHHHHhhhHHhCC-------hHHHHHHHHHHhcCCCc-chhhhhhheeeeeecCCCCccCHHHHH
Confidence 0 0000011123567778888776431 13578888778777665 458888888877776667778899999
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCC----------------CCCchhHhHHH
Q 001749 836 VMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS----------------EPDDAVRDNAA 899 (1018)
Q Consensus 836 l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~----------------~~~~~~~~na~ 899 (1018)
.+..+++.++|+|.+||+.|..++...+..-+..++..+|++++.|+.--.-+ ++.-.+|..|.
T Consensus 1008 ~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaF 1087 (1233)
T KOG1824|consen 1008 QIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAF 1087 (1233)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHH
Confidence 99999999999999999999999999999888888889999999886532211 12246889999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhhhhhhHHHHHHHHHhcCCCC------
Q 001749 900 GAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEE------ 973 (1018)
Q Consensus 900 ~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~------ 973 (1018)
.|+..++..+-+.+++-+++......|.- ......-.|-.+..|..-.+..+.+.+.++++.+...+..+..
T Consensus 1088 EcmytLLdscld~~dit~Fl~~~~~GL~D--hydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKq 1165 (1233)
T KOG1824|consen 1088 ECMYTLLDSCLDRLDITEFLNHVEDGLED--HYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQ 1165 (1233)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhH
Confidence 99999999887777777888876666643 2444455566666777667778899999999999888753321
Q ss_pred ----ChHHHHHHHHHHHHHHH
Q 001749 974 ----SSEVKSQVGMAFSHLIS 990 (1018)
Q Consensus 974 ----~~~~~~~~~~~l~~~~~ 990 (1018)
.++.++.+.+.+..+.+
T Consensus 1166 E~ek~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1166 EFEKQDELKRSALRAVAALLT 1186 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 36788888888888843
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-30 Score=269.88 Aligned_cols=667 Identities=18% Similarity=0.226 Sum_probs=473.2
Q ss_pred CCChHHHHHHHHHHHH-Hhc-C---C-C---cHH-HHHHHHhcCCChhHHHHHHHHHHHhhhh----hhccCCHHHHHHH
Q 001749 14 MPDNDARRQAEDQIKR-LAK-D---P-Q---VVP-ALVQHLRTAKTPNVRQLAAVLLRKKITG----HWAKLSPQLKQLV 79 (1018)
Q Consensus 14 s~d~~~r~~A~~~L~~-~~~-~---p-~---~~~-~l~~~l~~~~~~~~R~~a~~~l~~~i~~----~w~~l~~~~~~~i 79 (1018)
+-|-.+|..|---|++ +.- . | + |+. .+++-+. .+++-+|...++++..++.+ +| ..+
T Consensus 59 ~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lg-d~~~lIr~tvGivITTI~s~~~~~~w--------pel 129 (885)
T KOG2023|consen 59 SEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLG-DASPLIRATVGIVITTIASTGGLQHW--------PEL 129 (885)
T ss_pred ccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhcc-CchHHHHhhhhheeeeeecccccccc--------hhH
Confidence 4456677777666643 321 1 2 2 222 2333333 34679999999988887754 45 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHH-------cccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcc
Q 001749 80 KQSLIESITLEHSAPVRRASANVVSIIA-------KYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT 152 (1018)
Q Consensus 80 ~~~Ll~~l~~e~~~~vr~~~~~~l~~i~-------~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~ 152 (1018)
.+.|.+.|.+ ++......+-.++..|. ..+.+....+-++|.+++..++++++.|.-|+.++++++-.-+..
T Consensus 130 Lp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 130 LPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 5666677764 44444444444444443 233333345668999999999999999999999999988766777
Q ss_pred ccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001749 153 FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE 232 (1018)
Q Consensus 153 ~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~ 232 (1018)
+..+++.++..+...-+| .+++||+..+.++.-+.+..++ ++...++.+++...+..++.|++++.+||+.|..
T Consensus 209 l~~~iD~Fle~lFalanD-~~~eVRk~vC~alv~Llevr~d-----kl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 209 LYVHIDKFLEILFALAND-EDPEVRKNVCRALVFLLEVRPD-----KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred HHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHhcHH-----hcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 777889999998888888 9999999999999999998854 2344556666666666788899999999999999
Q ss_pred HhcCC--ccchhHhHHHHHHHHHHH----------hcCCCC-------Ch------------------------------
Q 001749 233 LIESP--APLLGDSVKSIVHFSLEV----------SSSHNL-------EP------------------------------ 263 (1018)
Q Consensus 233 l~~~~--~~~~~~~~~~li~~l~~~----------~~~~~~-------~~------------------------------ 263 (1018)
+++.. ...+.++++.+++.+++- +.+.+. ++
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 99875 567788999999887742 121100 00
Q ss_pred -------HHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc---hh
Q 001749 264 -------NTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KH 333 (1018)
Q Consensus 264 -------~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~---~~ 333 (1018)
..|..+..++..++.. +-..+++.++|++.+.-. .++|.++.++.-+++.+++.+- .+
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanv---------f~~elL~~l~PlLk~~L~---~~~W~vrEagvLAlGAIAEGcM~g~~p 430 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANV---------FGDELLPILLPLLKEHLS---SEEWKVREAGVLALGAIAEGCMQGFVP 430 (885)
T ss_pred ccccccccHhhccHHHHHHHHHh---------hHHHHHHHHHHHHHHHcC---cchhhhhhhhHHHHHHHHHHHhhhccc
Confidence 1333322222222221 234566777777765432 3679999999999999998765 45
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHH
Q 001749 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE 412 (1018)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 412 (1018)
.+|.++|++...+.+..+-+|.-+++.++..+.... +.-..++..++.-+++.+-|.|.+|+++||.++..+-+..+++
T Consensus 431 ~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e 510 (885)
T KOG2023|consen 431 HLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE 510 (885)
T ss_pred chHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch
Confidence 677889999999999999999999999999887532 2223567778888888888999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccc--cchHHHHHHHHHhhc---CCCHhHHHHHHHHHHHH
Q 001749 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL--PFLDPLMGKLLAALE---NSPRNLQETCMSAIGSV 487 (1018)
Q Consensus 413 ~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~--~~~~~l~~~l~~~l~---~~~~~vr~~al~al~~l 487 (1018)
+.+|+..++..+..+++.-..+--.....|++.++++.|..+. .|++-+|+.|++-++ +++ +----.++|++++
T Consensus 511 LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D-KdLfPLLEClSsi 589 (885)
T KOG2023|consen 511 LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD-KDLFPLLECLSSI 589 (885)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc-chHHHHHHHHHHH
Confidence 9999999999999888743322223457888999999988775 488889999887654 333 3334678999999
Q ss_pred HHHhhccchhhHHHHHH----HHHHHHhc----cC-----chhhhhHHHHHHHHHHHHHhhhhhhcCCCh--HHHHHHHH
Q 001749 488 AAAAEQAFIPYAERVLE----LLKIFMVL----TN-----DEDLRSRARATELLGLVAESVGRARMEPIL--PPFVEAAI 552 (1018)
Q Consensus 488 ~~~~~~~~~~~~~~i~~----~l~~~l~~----~~-----~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~--~~l~~~l~ 552 (1018)
+.+.+..|.||.+.+.. ++.+.++. .. .++...--.+++.++-++.++|. ...+.+ ..+++.++
T Consensus 590 a~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~-~ie~Lva~snl~~lll 668 (885)
T KOG2023|consen 590 ASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGS-HIEPLVAQSNLLDLLL 668 (885)
T ss_pred HHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhh-chHHHhhhccHHHHHH
Confidence 99999999998766554 44433221 11 12222223467888999988875 444433 24888889
Q ss_pred hccCCCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccc
Q 001749 553 SGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSV 632 (1018)
Q Consensus 553 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1018)
.++++..+++|++++..+|.+++.+.+...|++..++|.+...++.
T Consensus 669 ~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~---------------------------------- 714 (885)
T KOG2023|consen 669 QCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNP---------------------------------- 714 (885)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCCh----------------------------------
Confidence 9999999999999999999999999999999999999998743321
Q ss_pred cceeeecccchhHHHHHHHHHHHHHHccccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHH
Q 001749 633 RNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACT 712 (1018)
Q Consensus 633 ~~~~i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~ 712 (1018)
..+..-..|+-++|+++..++....||+..++.. +.
T Consensus 715 -------~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~--------------------L~----------------- 750 (885)
T KOG2023|consen 715 -------ENISVCNNAIWAIGEIALKMGLKMKQYVSPVLED--------------------LI----------------- 750 (885)
T ss_pred -------hhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHH--------------------HH-----------------
Confidence 0112255789999999998887777776653321 11
Q ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHH
Q 001749 713 SIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFA 792 (1018)
Q Consensus 713 ~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 792 (1018)
..++.. .....+++..+-.||.++...++.+.|+.+
T Consensus 751 --------------------------~iin~~------------------~~~~tllENtAITIGrLg~~~Pe~vAp~l~ 786 (885)
T KOG2023|consen 751 --------------------------TIINRQ------------------NTPKTLLENTAITIGRLGYICPEEVAPHLD 786 (885)
T ss_pred --------------------------HHhccc------------------CchHHHHHhhhhhhhhhhccCHHhcchhHH
Confidence 111110 011235566666788888888888999999
Q ss_pred HHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhh
Q 001749 793 KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAY 832 (1018)
Q Consensus 793 ~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~ 832 (1018)
.++.+-...++.-...+.+.+|+..+..++...+..+..-
T Consensus 787 ~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~ 826 (885)
T KOG2023|consen 787 SFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSS 826 (885)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhh
Confidence 9777665555554444669999999999998766554433
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=8.2e-29 Score=267.86 Aligned_cols=607 Identities=15% Similarity=0.190 Sum_probs=449.4
Q ss_pred hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCH
Q 001749 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (1018)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 411 (1018)
.+..+.++..+.+.+.+.+..+..-|+.|+|-++...++ .+++.++..+...+-......|..+...+.......+|
T Consensus 42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke---~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE---DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH---HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 455667777778889999999999999999999976554 36778888888887677777888888888777777766
Q ss_pred HHH-----HhhhhHHHHHHHhcc--CCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHH
Q 001749 412 EIV-----SHYESVLPCILNALE--DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAI 484 (1018)
Q Consensus 412 ~~~-----~~~~~~l~~l~~~l~--~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al 484 (1018)
... ..++.++|.+...+. .+...++-.++..++.+...+|.-+.++-..++..+...+.++...||..++.++
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 322 234455555555443 2334588889999999999999988888889999999999999999999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhcc---CCCChh
Q 001749 485 GSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF---GLEFSE 561 (1018)
Q Consensus 485 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l---~~~~~~ 561 (1018)
|.++..++.. .|..++..+..-+..... ...-...+.|++.++++.|. +|..|.+.+++.+.+.. +.++++
T Consensus 199 ~~la~~~~~~---ly~~li~~Ll~~L~~~~q--~~~~rt~Iq~l~~i~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDE 272 (1233)
T KOG1824|consen 199 GHLASSCNRD---LYVELIEHLLKGLSNRTQ--MSATRTYIQCLAAICRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDE 272 (1233)
T ss_pred HHHHHhcCHH---HHHHHHHHHHhccCCCCc--hHHHHHHHHHHHHHHHHhcc-hhhcccchhhHHHHHHhcccccCcHH
Confidence 9999998765 334455555555544321 12222567899999999987 89999999999988877 567889
Q ss_pred HHHHHHHHHHHHHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCC----Ccc-hhhccccccee
Q 001749 562 LREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSS----DDE-AHCERSVRNIS 636 (1018)
Q Consensus 562 ~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~ 636 (1018)
+|++.+++++.+...++.++.||.|.++..+++.+.+||++.+|.+|+++... .++.+| +++ |++|..|+.
T Consensus 273 LrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~--~ed~eDde~~deYsDDeD~SWkV-- 348 (1233)
T KOG1824|consen 273 LREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMF--LEDEEDDEQDDEYSDDEDMSWKV-- 348 (1233)
T ss_pred HHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhh--hhccccchhccccccccchhHHH--
Confidence 99999999999999999999999999999999999999998776543222111 111111 112 224456665
Q ss_pred eecccchhHHHHHHHHHHHHHHccccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Q 001749 637 VRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVE 716 (1018)
Q Consensus 637 i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~ 716 (1018)
|++|++|+..++.... +++..++..+-|.++..++ |++..|....++++..
T Consensus 349 --------RRaAaKcl~a~IsSR~--------------------E~L~~~~q~l~p~lI~Rfk-EREEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 349 --------RRAAAKCLEAVISSRL--------------------EMLPDFYQTLGPALISRFK-EREENVKADVFHAYIA 399 (1233)
T ss_pred --------HHHHHHHHHHHHhccH--------------------HHHHHHHHHhCHHHHHHHH-HHhhhHHHHHHHHHHH
Confidence 9999999999887533 4555666678889999987 8889999999999999
Q ss_pred HHHHhCCc--------------------ccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHH
Q 001749 717 IINDYGYM--------------------AVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLL 776 (1018)
Q Consensus 717 ~i~~~g~~--------------------~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 776 (1018)
+++..++- .+..+.+.|++.+-+.++.+... ++ ...-.++
T Consensus 400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~k----------------t~----~~cf~lL 459 (1233)
T KOG1824|consen 400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVK----------------TR----QGCFLLL 459 (1233)
T ss_pred HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhcccc----------------ch----hhHHHHH
Confidence 99876531 12334455555555555432211 11 1222455
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHhhccCCCc-cchhhhhHhHHHHHhhcCc-chHhhHHhhHHHHHHhcCCCChHHHHH
Q 001749 777 PAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPL-QDRTMVVATLAEVARDMGS-PIAAYVDRVMPLVLKELASPDAMNRRN 854 (1018)
Q Consensus 777 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~r~~a~~~l~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~vr~~ 854 (1018)
..+...+++...++...++|.+...++|.++. ..+..++.++..++...++ .+.||++.+.|+++.+..++.+.+-..
T Consensus 460 ~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaE 539 (1233)
T KOG1824|consen 460 TELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAE 539 (1233)
T ss_pred HHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHH
Confidence 66666778888899999999999999987653 3466788888777666555 478999999999999999999999999
Q ss_pred HHHHHHHHHhhcCc-------chhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCCC--hhhHHHHHHhh
Q 001749 855 AAFCVGELCKNGGE-------SALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP--LNQVLPVLLKV 925 (1018)
Q Consensus 855 a~~~lg~l~~~~~~-------~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~~--~~~~l~~~l~~ 925 (1018)
|....+.+++...+ ++.||+.+++....+.+...+.|+.+++.|++|+|.++...++.+. ++.++|.+++.
T Consensus 540 AL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eR 619 (1233)
T KOG1824|consen 540 ALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLER 619 (1233)
T ss_pred HHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 99999999876432 4688999999988888887888999999999999999999888774 88999999999
Q ss_pred CCCCCcHHhhHHHHHHHHHHHhhcC-hhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh----H-hhHHHH
Q 001749 926 LPLKEDFEESMAVYNCISTLVLSSN-PQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLY----G-QQMQPL 999 (1018)
Q Consensus 926 lp~~~d~~e~~~~~~~l~~l~~~~~-~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~-~~~~~~ 999 (1018)
|.. +-.+..++++++..+.+.- -...+.+.+++..+.+++.+. ....+......+..+.+.| | ..++.+
T Consensus 620 l~n---EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~--~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~v 694 (1233)
T KOG1824|consen 620 LGN---EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKN--QRALRLATLTALDKLVKNYSDSIPAELLEAV 694 (1233)
T ss_pred Hhc---hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 864 3456788899998765332 224578889999999998652 2223333344444444433 2 345555
Q ss_pred HhcCCH
Q 001749 1000 LSNLSP 1005 (1018)
Q Consensus 1000 ~~~l~~ 1005 (1018)
+..+|+
T Consensus 695 L~el~~ 700 (1233)
T KOG1824|consen 695 LVELPP 700 (1233)
T ss_pred HHHhhh
Confidence 555543
No 10
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-27 Score=251.64 Aligned_cols=587 Identities=18% Similarity=0.215 Sum_probs=394.7
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhhcc-------CCH
Q 001749 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAK-------LSP 73 (1018)
Q Consensus 2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~-~~~~R~~a~~~l~~~i~~~w~~-------l~~ 73 (1018)
.+.|.+.|.+..+||+++|+.||+.|++...++++...+++++.+++ ++++|..|++.+||.++++|.. +.+
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~ 83 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIE 83 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccch
Confidence 36777888889999999999999999999999999999999998865 8999999999999999999974 567
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccc
Q 001749 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153 (1018)
Q Consensus 74 ~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~ 153 (1018)
+.++.||..++..+.+ +...+..++.++++.|+++++| ..||.++|.+...+++.|-++..+.+..-.++.+.+...+
T Consensus 84 ~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ef 161 (960)
T KOG1992|consen 84 EDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEF 161 (960)
T ss_pred hHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccc
Confidence 8899999999999986 6789999999999999999999 5999999999999999988887788777777776654322
Q ss_pred c---------ccHH----HHHHHHHHh---cC-CCCCHH---HHHHHHHHHHHhhccc----CChhhHHHHHhhHHHHHH
Q 001749 154 R---------PHFA----DMQALLLKC---LQ-DETSNR---VRIAALKAIGSFLEFT----NDGAEVVKFREFIPSILN 209 (1018)
Q Consensus 154 ~---------~~~~----~l~~~l~~~---l~-d~~~~~---vr~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~ll~ 209 (1018)
. ..++ .+..++.+. .+ ..++.. +-...+..+.++.-.. -.++.......+++.+.+
T Consensus 162 rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k 241 (960)
T KOG1992|consen 162 RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHK 241 (960)
T ss_pred ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHH
Confidence 1 1112 111222211 11 111221 1111222222221111 112233344555555555
Q ss_pred HHH---HHhhcCC------HHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCC---CChHHHHHHHHHHHHHH
Q 001749 210 VSR---QCLASGE------EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN---LEPNTRHQAIQIISWLA 277 (1018)
Q Consensus 210 ~l~---~~l~~~~------~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~---~~~~~r~~a~~~l~~~~ 277 (1018)
.+. ..+.+++ .+.+...|+.+.-.+.....-|++++++++...+.++.+.. .-+.....|+.||..++
T Consensus 242 ~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~ 321 (960)
T KOG1992|consen 242 LLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVS 321 (960)
T ss_pred HHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 543 1112211 13466888988888888899999999999987776654332 23456667899999888
Q ss_pred HHh--HHHhhhcCChHHHHH-HHhhhhccCCCCC---C-------------CCCCcHHHHHHHHHHHHHHHcchhchHHH
Q 001749 278 KYK--YNSLKKHKLVIPILQ-VMCPLLAESNEAG---E-------------DDDLAPDRAAAEVIDTMALNLAKHVFPPV 338 (1018)
Q Consensus 278 ~~~--~~~~~~~~~~~~i~~-~l~~~l~~~~~d~---~-------------d~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 338 (1018)
+.. +..+...+.+..+-+ .++|-+.-..+|+ | .|-++-|+.|...+..|+..+...+.+.+
T Consensus 322 ~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~ 401 (960)
T KOG1992|consen 322 RRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVF 401 (960)
T ss_pred hhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHH
Confidence 643 223333344444433 2334333211111 1 12345678899999999999986677776
Q ss_pred HHHHHhhhc------CCChhHHHHHHHHHHHHhhcCh---------HHHHHh----HHHHHHHHHhhcCCCChhHHHHHH
Q 001749 339 FEFASVSCQ------NASPKYREAAVTAIGIISEGCA---------EWMKEK----LESVLHIVLGALRDPEQFVRGAAS 399 (1018)
Q Consensus 339 ~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~---------~~~~~~----l~~l~~~l~~~l~d~~~~Vr~~a~ 399 (1018)
-..+...+. |.+|+.++.++..+.+++.... ..+.+. ...+.|.+...=..++|.++..+.
T Consensus 402 ~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI 481 (960)
T KOG1992|consen 402 SSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI 481 (960)
T ss_pred HHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccc
Confidence 666666665 6799999999988888876421 111111 223344433322256788888877
Q ss_pred HHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh---------ccccccchHHHHHHHHHhhc
Q 001749 400 FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM---------GEEILPFLDPLMGKLLAALE 470 (1018)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~---------~~~~~~~~~~l~~~l~~~l~ 470 (1018)
.-+-.+=...++ +++-.++|.+...|..++..|-.-|+.++..+.... +..+.||...++..|+..++
T Consensus 482 Ky~~~FR~ql~~---~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s 558 (960)
T KOG1992|consen 482 KYIYTFRNQLGK---EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALS 558 (960)
T ss_pred ceeeeecccCCh---HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhcc
Confidence 666555555543 467789999999999988888888888888776433 24577899999999999998
Q ss_pred CCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhcc--CchhhhhHHHHHHHHHHHHHhhhhhh---cCCChH
Q 001749 471 NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--NDEDLRSRARATELLGLVAESVGRAR---MEPILP 545 (1018)
Q Consensus 471 ~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~r~~a~~~l~~l~~~~g~~~---~~~~~~ 545 (1018)
.+...-.+..+++|-++.....+...|+.+.+++.|.+++... +..+...-...++.++.+.+..++.. ......
T Consensus 559 ~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~ 638 (960)
T KOG1992|consen 559 LPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEE 638 (960)
T ss_pred CCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence 8877777889999999999999999999999888888776531 22222345577888888887665432 223334
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHH
Q 001749 546 PFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAF 593 (1018)
Q Consensus 546 ~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll 593 (1018)
.+++.+-..++.|-.+...++++.++.+....+....+....++|.++
T Consensus 639 aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 639 ALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 444443334444445566667777776666655543333334444443
No 11
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.2e-26 Score=244.08 Aligned_cols=566 Identities=17% Similarity=0.250 Sum_probs=364.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhcc-----CCHHHHHH
Q 001749 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAK-----LSPQLKQL 78 (1018)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~-~~~~~~R~~a~~~l~~~i~~~w~~-----l~~~~~~~ 78 (1018)
+.|+|++..|||..++|.||++|++.+++|+|...|..+..+ +.+.++|-+|+++|||-|.++|.. ++++++..
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~ 81 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDF 81 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHH
Confidence 568999999999999999999999999999999999999887 457899999999999999999984 88999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCC----ChHHHHHHHHHHHHhhhhhh----
Q 001749 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE----QEEHREVALILFSSLTETIG---- 150 (1018)
Q Consensus 79 i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~----~~~~r~~al~~l~~l~~~~~---- 150 (1018)
||..++..+. |+++.+..+.|.++++||+.++| .+||+++|.+.+.+++. |....+..+.++..+.+..+
T Consensus 82 iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 82 IRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999998 78999999999999999999999 59999999999999876 77777888888888886653
Q ss_pred ----ccccccHHHHHHHHHHhcCCC------------C------CHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHH
Q 001749 151 ----QTFRPHFADMQALLLKCLQDE------------T------SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (1018)
Q Consensus 151 ----~~~~~~~~~l~~~l~~~l~d~------------~------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll 208 (1018)
+.|....+.+++++...+-++ . ..++-..+++++.+++-+.-.......+.+-++.++
T Consensus 160 ~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F~ 239 (978)
T KOG1993|consen 160 LADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQFL 239 (978)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHH
Confidence 223344455555333333220 0 122333456666666543311111111222233333
Q ss_pred HH----HHHHhhcC----CHHHHHHH----HHHHHHHhcCCccchhH--hHHHHHHHHHHHhcCC-----------CCCh
Q 001749 209 NV----SRQCLASG----EEDVAVIA----FEIFDELIESPAPLLGD--SVKSIVHFSLEVSSSH-----------NLEP 263 (1018)
Q Consensus 209 ~~----l~~~l~~~----~~~~~~~a----~~~l~~l~~~~~~~~~~--~~~~li~~l~~~~~~~-----------~~~~ 263 (1018)
+. +...++.+ ..++.... .+.+..+.+.+|--|.. ..+..+++.+..+.++ ..-+
T Consensus 240 e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe 319 (978)
T KOG1993|consen 240 ELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSFE 319 (978)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccHH
Confidence 32 11111111 11222333 34455555665554443 4444444444433322 0111
Q ss_pred HHHHHHHHHHHHHHHHh---HHH----h-----------h--hc-----CChHHHHHHHhhh---h-----ccCCCC---
Q 001749 264 NTRHQAIQIISWLAKYK---YNS----L-----------K--KH-----KLVIPILQVMCPL---L-----AESNEA--- 307 (1018)
Q Consensus 264 ~~r~~a~~~l~~~~~~~---~~~----~-----------~--~~-----~~~~~i~~~l~~~---l-----~~~~~d--- 307 (1018)
+.-.+++..+..+...+ +.. + . .. +-+..+...++.. | .+|.+|
T Consensus 320 ~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~ 399 (978)
T KOG1993|consen 320 EFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPEG 399 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChHH
Confidence 22233333333322211 100 0 0 00 0111222222221 1 122221
Q ss_pred ----CC--CCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCC---------ChhHHHHHHHHHHHHhhcChHH-
Q 001749 308 ----GE--DDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNA---------SPKYREAAVTAIGIISEGCAEW- 371 (1018)
Q Consensus 308 ----~~--d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~---------~~~~r~aal~~l~~l~~~~~~~- 371 (1018)
+. |-++..|-+|......+-..+++-+.|.++..+....+.+ ..-.+.|...++|..+....+.
T Consensus 400 ~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~ 479 (978)
T KOG1993|consen 400 WVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL 479 (978)
T ss_pred hhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 2234678899999988888888888888888885544332 1233455556666665543221
Q ss_pred -HHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCC-hHHHHHHHHHHHHHHh
Q 001749 372 -MKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES-DEVKEKSYYALAAFCE 448 (1018)
Q Consensus 372 -~~~~l-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~v~~~a~~al~~l~~ 448 (1018)
+...+ ..++|.+. .-.+....+|...+|.+|+.++.-.+ .+.-+.+..++++.++|.+ ..|+-.++.++..+++
T Consensus 480 dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~--~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vD 556 (978)
T KOG1993|consen 480 DFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQK--LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVD 556 (978)
T ss_pred CHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheech--HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhh
Confidence 11111 12333332 11133455799999999999874221 2334566777888888874 4588899999999998
Q ss_pred hh---ccccccchHHHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHH
Q 001749 449 DM---GEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARA 524 (1018)
Q Consensus 449 ~~---~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a 524 (1018)
.. ++.+.||++.+...+++++..- ....|...+..++.++..+++.+.||..+++..+..++...+ ++.-+|.+.
T Consensus 557 D~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~al 635 (978)
T KOG1993|consen 557 DWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCAL 635 (978)
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHH
Confidence 76 5779999999999999988764 567899999999999999999999999999999988887654 334478888
Q ss_pred HHHHHHHHHhhhhhh--cCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHH
Q 001749 525 TELLGLVAESVGRAR--MEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGV 576 (1018)
Q Consensus 525 ~~~l~~l~~~~g~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 576 (1018)
+.++..+..++|.+. +.|++-++++...+.-+.++-.+.+..+..|+.....
T Consensus 636 L~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 636 LATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMN 689 (978)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhc
Confidence 899999999998543 5566667766543322222334567777777766543
No 12
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-26 Score=244.58 Aligned_cols=627 Identities=16% Similarity=0.243 Sum_probs=430.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCC---CCccchHHHHHHhhcCC--ChHHHHHHHHHHHHh
Q 001749 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA---GEWPDLLPFLFQFSQSE--QEEHREVALILFSSL 145 (1018)
Q Consensus 71 l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~---~~w~~ll~~l~~~~~s~--~~~~r~~al~~l~~l 145 (1018)
++...-+.+...+......++...++...+.++|.|...-.|+ ...++++-.+.+..... +...|.+|+.+|..-
T Consensus 122 lP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~ns 201 (859)
T KOG1241|consen 122 LPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNS 201 (859)
T ss_pred CchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHH
Confidence 3444444555566666665555579999999999998765443 35577788888877654 457899999999988
Q ss_pred hhhhhccccccH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHH-HHHHHHHHhhcCCHHH
Q 001749 146 TETIGQTFRPHF--ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS-ILNVSRQCLASGEEDV 222 (1018)
Q Consensus 146 ~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-ll~~l~~~l~~~~~~~ 222 (1018)
.+.....|.... +-++...-..-+. ++.++|.+|+.||.+++...- .....++.. ++......+.++++++
T Consensus 202 Lef~~~nF~~E~ern~iMqvvcEatq~-~d~~i~~aa~~ClvkIm~LyY-----~~m~~yM~~alfaitl~amks~~deV 275 (859)
T KOG1241|consen 202 LEFTKANFNNEMERNYIMQVVCEATQS-PDEEIQVAAFQCLVKIMSLYY-----EFMEPYMEQALFAITLAAMKSDNDEV 275 (859)
T ss_pred HHHHHHhhccHhhhceeeeeeeecccC-CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 776554443222 2334444444455 889999999999999876441 112223222 4444455567888999
Q ss_pred HHHHHHHHHHHhcC---------------Ccc----chhHhHHHHHHHHHHHhcCCC-----CChHHHHHHHHHHHHHHH
Q 001749 223 AVIAFEIFDELIES---------------PAP----LLGDSVKSIVHFSLEVSSSHN-----LEPNTRHQAIQIISWLAK 278 (1018)
Q Consensus 223 ~~~a~~~l~~l~~~---------------~~~----~~~~~~~~li~~l~~~~~~~~-----~~~~~r~~a~~~l~~~~~ 278 (1018)
+..+++.|..+.+. .++ |.+.-++.+++.+++.+.+.+ .+......|-.+|.-+++
T Consensus 276 alQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~ 355 (859)
T KOG1241|consen 276 ALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ 355 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH
Confidence 99999999876532 121 223445567777766654421 122344444444444444
Q ss_pred HhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhcCCChhHH
Q 001749 279 YKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQNASPKYR 354 (1018)
Q Consensus 279 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~~~~~~r 354 (1018)
..+. ..++.+++++-.-+. .++|..|.+|.-+++.+-.... ....+..+|.+...+.++.-.+|
T Consensus 356 ~~~D-----~Iv~~Vl~Fiee~i~-------~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~Vk 423 (859)
T KOG1241|consen 356 CVGD-----DIVPHVLPFIEENIQ-------NPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVK 423 (859)
T ss_pred Hhcc-----cchhhhHHHHHHhcC-------CcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhc
Confidence 3322 244555555544443 3568889998888887765443 33445566777777888888889
Q ss_pred HHHHHHHHHHhhcChHHHHH--hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHH---------HHHhhhhHHHH
Q 001749 355 EAAVTAIGIISEGCAEWMKE--KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE---------IVSHYESVLPC 423 (1018)
Q Consensus 355 ~aal~~l~~l~~~~~~~~~~--~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---------~~~~~~~~l~~ 423 (1018)
.++.++||.+++++++...+ ++..+++.++..|.| +|+|-..+||++-.+++.+... ..++++.++..
T Consensus 424 dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~ 502 (859)
T KOG1241|consen 424 DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGS 502 (859)
T ss_pred chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHH
Confidence 99999999999998865543 467788888888877 8899999999999999776321 22477788888
Q ss_pred HHHhccC---CChHHHHHHHHHHHHHHhhhcccccc----chHHHHHHHHHhhcCC---------CHhHHHHHHHHHHHH
Q 001749 424 ILNALED---ESDEVKEKSYYALAAFCEDMGEEILP----FLDPLMGKLLAALENS---------PRNLQETCMSAIGSV 487 (1018)
Q Consensus 424 l~~~l~~---~~~~v~~~a~~al~~l~~~~~~~~~~----~~~~l~~~l~~~l~~~---------~~~vr~~al~al~~l 487 (1018)
|++.-.- .....|.+|..+|..+++.+++...| ....++.+|-+.+++. -..++...+.+++.+
T Consensus 503 Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i 582 (859)
T KOG1241|consen 503 LLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSI 582 (859)
T ss_pred HHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHH
Confidence 8876654 23569999999999999999765443 3445566665555521 245778889999999
Q ss_pred HHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccC-CCChhHHHHH
Q 001749 488 AAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG-LEFSELREYT 566 (1018)
Q Consensus 488 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~ 566 (1018)
.+..+.++.++.+.+|..+.++++...+. .+-..++-.++.++..+|+ .|..|.+.+.+.+...++ ..+..+...+
T Consensus 583 ~rk~~~~~~~~~d~iM~lflri~~s~~s~--~v~e~a~laV~tl~~~Lg~-~F~kym~~f~pyL~~gL~n~~e~qVc~~a 659 (859)
T KOG1241|consen 583 IRKVGSDIREVSDQIMGLFLRIFESKRSA--VVHEEAFLAVSTLAESLGK-GFAKYMPAFKPYLLMGLSNFQEYQVCAAA 659 (859)
T ss_pred HHHccccchhHHHHHHHHHHHHHcCCccc--cchHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999999999999999873221 2345788889999999987 899999999999999884 4567788899
Q ss_pred HHHHHHHHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHH
Q 001749 567 HGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKA 646 (1018)
Q Consensus 567 ~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~ 646 (1018)
.+..|.+++.++++|.||-+.++..|+..++... ..-+.|.
T Consensus 660 VglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~---------------------------------------~hR~vKP 700 (859)
T KOG1241|consen 660 VGLVGDLARALEDDILPYCDELMTVLVQCLSSPN---------------------------------------LHRNVKP 700 (859)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcc---------------------------------------ccccccc
Confidence 9999999999999999999999999999886321 0113488
Q ss_pred HHHHHHHHHHHHccccCcchHHHHHHHhhcCCC----h--hHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Q 001749 647 AATQALGLFALHTKSSYAPFLEESLKILSHNEG----P--AKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIIND 720 (1018)
Q Consensus 647 ~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~----~--~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~ 720 (1018)
..+.++|++|..+|.+|.||++.++..+++..+ + -....+.+ +++..++++...++..
T Consensus 701 ~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd----------------~LRe~~leay~gi~qg 764 (859)
T KOG1241|consen 701 AILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVD----------------ELREGILEAYTGIIQG 764 (859)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHH----------------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877744221 0 01111111 2333444444445544
Q ss_pred hCCc----ccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHH
Q 001749 721 YGYM----AVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFA 792 (1018)
Q Consensus 721 ~g~~----~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 792 (1018)
++.. .+.++++.|+ .++.+-.. + ++.++.+..++..+|+.++..+|.+..+++.
T Consensus 765 lk~~~~~~~~~p~v~~I~----sfi~~I~~------e--------~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~ 822 (859)
T KOG1241|consen 765 LKTHADVMLVQPYVPHII----SFIDRIAA------E--------PDVSEALHAAALGLIGDLATMFGKGVIKLFL 822 (859)
T ss_pred hhcccchhhhhcchHHHH----HHHHHHhc------C--------cccchHHHHHHHHHHHHHHHHcccchhhhhc
Confidence 4421 2345665555 44443110 0 1223456778888899999999886665543
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.97 E-value=7.9e-24 Score=229.79 Aligned_cols=540 Identities=19% Similarity=0.259 Sum_probs=348.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhccC----------
Q 001749 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKL---------- 71 (1018)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~l---------- 71 (1018)
+.+..+|.+++|+|+.+|.+||.+|+++...++|...|.+++.+. .....||.|.++|++.+.++|...
T Consensus 4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~ 83 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIV 83 (1005)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcc
Confidence 568899999999999999999999999999999999999999875 578999999999999999999863
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhc
Q 001749 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (1018)
Q Consensus 72 ~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 151 (1018)
+.+.+..||+.|++.+. +++..+|+.++.+++.|+..++| +.||+++|.+..++.+.+.+..++|+.++..+......
T Consensus 84 ~e~~K~~IRe~Ll~~l~-~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 84 SEEVKALIREQLLNLLD-DSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred cHHHHHHHHHHHHhhhh-ccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH
Confidence 45678899999999999 68999999999999999999999 59999999999999998999999999999999876642
Q ss_pred ccc-----ccHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHHhh---cccCChh---hHHHHHhhHHHHHHHHHHHhhcC
Q 001749 152 TFR-----PHFADMQALLLKCLQDETSNRVRIAAL--KAIGSFL---EFTNDGA---EVVKFREFIPSILNVSRQCLASG 218 (1018)
Q Consensus 152 ~~~-----~~~~~l~~~l~~~l~d~~~~~vr~~a~--~~l~~~~---~~~~~~~---~~~~~~~~~~~ll~~l~~~l~~~ 218 (1018)
... ..++.+.-.+. .... .+...|..++ +.+..+. ....... -..-+...++.+++.+.+.++-.
T Consensus 162 ee~~~~~~~~l~~m~~~f~-~~~~-~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~ 239 (1005)
T KOG2274|consen 162 EEMFFVGPVSLAEMYRIFA-LTIV-YSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRN 239 (1005)
T ss_pred HHHhcccccchhhhhhhhh-hccc-cchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 111 12223322221 2222 3333343333 3333332 2221110 11223455666666655554432
Q ss_pred ---CHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhc-------------C-------CCCChH------HHHHH
Q 001749 219 ---EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS-------------S-------HNLEPN------TRHQA 269 (1018)
Q Consensus 219 ---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~-------------~-------~~~~~~------~r~~a 269 (1018)
+...+....+++..+.+..|.+..+.+...++..++... . .+.+++ .-...
T Consensus 240 ~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i 319 (1005)
T KOG2274|consen 240 DGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQI 319 (1005)
T ss_pred ccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhH
Confidence 235677888888888888776665555444433332110 0 011111 22335
Q ss_pred HHHHHHHHHHhHH--HhhhcCChHHHHHHHhhhhc-------cCCCC------CCCCCCcHHHHHHHHHHHHHHHcchhc
Q 001749 270 IQIISWLAKYKYN--SLKKHKLVIPILQVMCPLLA-------ESNEA------GEDDDLAPDRAAAEVIDTMALNLAKHV 334 (1018)
Q Consensus 270 ~~~l~~~~~~~~~--~~~~~~~~~~i~~~l~~~l~-------~~~~d------~~d~~~~~~~~a~~~l~~l~~~~~~~~ 334 (1018)
++|+..++....- .+.+ .+++++..+...+. .|..| ++++.++.|..+...+-.+...+|...
T Consensus 320 ~eF~s~i~t~~~~~~ti~~--~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~ 397 (1005)
T KOG2274|consen 320 VEFLSTIVTNRFLSKTIKK--NLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEG 397 (1005)
T ss_pred HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchh
Confidence 6777777654321 1222 22222222222111 12211 233335777777777888888888555
Q ss_pred hHHHHHHHHhh---------hcC-CChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHH
Q 001749 335 FPPVFEFASVS---------CQN-ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALG 403 (1018)
Q Consensus 335 ~~~~~~~l~~~---------l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~Vr~~a~~~l~ 403 (1018)
+.++.+...+. ++. ..|+..++.+.+......+ +.....+..++.++...+. ...|..-..+.++++
T Consensus 398 i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~ 475 (1005)
T KOG2274|consen 398 INPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTIS 475 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHH
Confidence 55555443222 223 3467777777777666543 2223445556666666665 456766669999999
Q ss_pred HhHhhcCHHHHHhhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHH
Q 001749 404 QFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMS 482 (1018)
Q Consensus 404 ~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~ 482 (1018)
.+++... ...+.+..++...+..+. +..+.++.+|+.++..++ ..+.+.++.+.+++.|.++....+..+-...++
T Consensus 476 ~fs~~~~-~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE 552 (1005)
T KOG2274|consen 476 KFSSSTV-INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLME 552 (1005)
T ss_pred HHHhhhc-cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHH
Confidence 9888742 123445566666666665 334558888888877776 345678999999999999999888999999999
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccC
Q 001749 483 AIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG 556 (1018)
Q Consensus 483 al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~ 556 (1018)
+++.+++.-++.-...-..+.|....++...+ ++..+.+.+-+++..+... .....|+...+++.+++.++
T Consensus 553 ~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~--~~~~g~m~e~~iPslisil~ 623 (1005)
T KOG2274|consen 553 ALSSVVKLDPEFAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQI--AANYGPMQERLIPSLISVLQ 623 (1005)
T ss_pred HHHHHhccChhhhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHH--HHhhcchHHHHHHHHHHHHc
Confidence 99998877665433444556777666665432 2223344444555444431 22345566666666555554
No 14
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.1e-20 Score=198.57 Aligned_cols=500 Identities=18% Similarity=0.159 Sum_probs=331.2
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhccC--------
Q 001749 1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKL-------- 71 (1018)
Q Consensus 1 m~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~l-------- 71 (1018)
|.+++.|++.+.++.|..+|+.||..|+++.++|+|+..+++++.+. -++.+|+.|+++|||+|.+.|+.+
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 78899999999999999999999999999999999999999999875 589999999999999999999973
Q ss_pred -CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhh
Q 001749 72 -SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (1018)
Q Consensus 72 -~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 150 (1018)
.++.+..++++++..+.. ++...|...-.++..|...++|...|+ +.|....++.+++..+...|+.++..+++...
T Consensus 81 ek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayR 158 (970)
T COG5656 81 EKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYR 158 (970)
T ss_pred ccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence 235566666666666664 566677777777778888888888999 99999999999999999999999999997642
Q ss_pred -------ccccccHHHHHHHHHHhcC---CCC---CHHHHHHHHHHHHHhhcccCChhhH---HHHHhhHHHHHHHHHHH
Q 001749 151 -------QTFRPHFADMQALLLKCLQ---DET---SNRVRIAALKAIGSFLEFTNDGAEV---VKFREFIPSILNVSRQC 214 (1018)
Q Consensus 151 -------~~~~~~~~~l~~~l~~~l~---d~~---~~~vr~~a~~~l~~~~~~~~~~~~~---~~~~~~~~~ll~~l~~~ 214 (1018)
..+.+....+.|.+.+.-. +.. +.+.-...++.+-. +.+..-|+.. ..+...+...+.++.+-
T Consensus 159 wk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKs-vcy~~LP~~lsa~e~f~sw~ql~l~i~qkp 237 (970)
T COG5656 159 WKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKS-VCYYSLPDFLSAIETFSSWFQLSLRILQKP 237 (970)
T ss_pred hhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHH-HHHhhCCHHHccchhhHHHHHHHHHHHcCC
Confidence 1223334445555544322 211 22222223332222 2222111111 12233333333333211
Q ss_pred hhc----CCHHH---------HHHHHHHHHHHhcCCcc--------c----hhHhHHHHHHHHHHHhc---CCC--CChH
Q 001749 215 LAS----GEEDV---------AVIAFEIFDELIESPAP--------L----LGDSVKSIVHFSLEVSS---SHN--LEPN 264 (1018)
Q Consensus 215 l~~----~~~~~---------~~~a~~~l~~l~~~~~~--------~----~~~~~~~li~~l~~~~~---~~~--~~~~ 264 (1018)
+.. -++++ .+.|+..|.++.....+ . +-..++.++...++... +.. .++.
T Consensus 238 lp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~ 317 (970)
T COG5656 238 LPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDI 317 (970)
T ss_pred CCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchH
Confidence 111 12332 45666666665543211 1 11234444444443321 122 3333
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhcCChHH-HHHHHhhhhccCCCCCC-----------------CCCCcHHHHHHHHHHHH
Q 001749 265 TRHQAIQIISWLAKYKYNSLKKHKLVIP-ILQVMCPLLAESNEAGE-----------------DDDLAPDRAAAEVIDTM 326 (1018)
Q Consensus 265 ~r~~a~~~l~~~~~~~~~~~~~~~~~~~-i~~~l~~~l~~~~~d~~-----------------d~~~~~~~~a~~~l~~l 326 (1018)
.-.....|+..|+.....+.--.+.+.- +-..++|.++-.+++.| |+-.++.-+|..++-.+
T Consensus 318 ~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~ 397 (970)
T COG5656 318 ELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIIS 397 (970)
T ss_pred HHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHH
Confidence 3333344554555433222111123333 33567888886654321 12234555677777777
Q ss_pred HHHcchhchHHHHHHHHhhhc-C-------CChhHHHHHHHHHHHHhh--cChHHHHHhHHH-HHHHHHhhcCCCChhHH
Q 001749 327 ALNLAKHVFPPVFEFASVSCQ-N-------ASPKYREAAVTAIGIISE--GCAEWMKEKLES-VLHIVLGALRDPEQFVR 395 (1018)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~l~-~-------~~~~~r~aal~~l~~l~~--~~~~~~~~~l~~-l~~~l~~~l~d~~~~Vr 395 (1018)
+...++..+..+++++...++ + .+.+..++|++.++.+.. .........++. +++.+++.++++.-..|
T Consensus 398 ~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~ 477 (970)
T COG5656 398 KSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLK 477 (970)
T ss_pred hcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchH
Confidence 777788888888888877662 1 457888999999999988 223344444444 56789999999999999
Q ss_pred HHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh--ccccccchHHHHHHHHHhhcCCC
Q 001749 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAALENSP 473 (1018)
Q Consensus 396 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~--~~~~~~~~~~l~~~l~~~l~~~~ 473 (1018)
..||..++.+.+.++. ...+.++.....+++++.+-.|+..|+.|+..++.+. .+.+..+.+..|+.|+.+-+.-+
T Consensus 478 Srace~is~~eeDfkd--~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fe 555 (970)
T COG5656 478 SRACEFISTIEEDFKD--NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFE 555 (970)
T ss_pred HHHHHHHHHHHHhccc--chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccccc
Confidence 9999999999877754 2345677778888888877789999999999998765 45677899999999998876655
Q ss_pred HhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 001749 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKI 508 (1018)
Q Consensus 474 ~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~ 508 (1018)
..+-.. ++..++....+...||.++++..+.+
T Consensus 556 iD~LS~---vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 556 IDPLSM---VMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred chHHHH---HHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 444433 44456677778888888887776654
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.93 E-value=1e-20 Score=194.78 Aligned_cols=569 Identities=15% Similarity=0.153 Sum_probs=385.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhc--CC-CcHHHHHHHHh----cCCChhHHHHHHHHHHHhhhhhhccCCHHHHH---
Q 001749 8 LLIQFLMPDNDARRQAEDQIKRLAK--DP-QVVPALVQHLR----TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQ--- 77 (1018)
Q Consensus 8 ~l~~~~s~d~~~r~~A~~~L~~~~~--~p-~~~~~l~~~l~----~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~--- 77 (1018)
.++.+.||.+..-+.|.+.+.++.. -| +.++-|+..+. ..++...++.+...+..... +-+|+...
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce----s~~Pe~li~~s 174 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE----SEAPEDLIQMS 174 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh----ccCHHHHHHHh
Confidence 4666778887777777777766542 34 35666666654 23455666666666555443 23443322
Q ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHHHHH-H--HcccCC-CCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhc
Q 001749 78 --LVKQSLIESITLEHSAPVRRASANVVSI-I--AKYAVP-AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (1018)
Q Consensus 78 --~i~~~Ll~~l~~e~~~~vr~~~~~~l~~-i--~~~~~~-~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 151 (1018)
.+-....-.+.+|++..+|-.+-.++.. + ++..+. +.+-+-+++...+..++++.+..+.++-||..+...+-+
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~ 254 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK 254 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 2233333445567888899888777764 2 222111 134456788889999999999999999999999987776
Q ss_pred cccccHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHhhccc----------CC------hhhHHHHHhhHHHHHHHHHHH
Q 001749 152 TFRPHFADMQ-ALLLKCLQDETSNRVRIAALKAIGSFLEFT----------ND------GAEVVKFREFIPSILNVSRQC 214 (1018)
Q Consensus 152 ~~~~~~~~l~-~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~----------~~------~~~~~~~~~~~~~ll~~l~~~ 214 (1018)
.+.++++..+ .+..+.+.+ ++.+|...|++..+.+++-- +. .+......+.+|.+++.+.+-
T Consensus 255 fm~~ymE~aL~alt~~~mks-~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 255 FMQSYMENALAALTGRFMKS-QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 7777776654 556677777 89999999999887775421 10 112233456888888876542
Q ss_pred hhc---CCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChH
Q 001749 215 LAS---GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVI 291 (1018)
Q Consensus 215 l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~ 291 (1018)
=.+ +++....+|..||.-+++...+. .+..++.+.-+-+.++ +..-|..+.-.+.++.+........ ++++
T Consensus 334 ~ed~~~DdWn~smaA~sCLqlfaq~~gd~---i~~pVl~FvEqni~~~--~w~nreaavmAfGSvm~gp~~~~lT-~~V~ 407 (858)
T COG5215 334 GEDYYGDDWNPSMAASSCLQLFAQLKGDK---IMRPVLGFVEQNIRSE--SWANREAAVMAFGSVMHGPCEDCLT-KIVP 407 (858)
T ss_pred CCCccccccchhhhHHHHHHHHHHHhhhH---hHHHHHHHHHHhccCc--hhhhHHHHHHHhhhhhcCccHHHHH-hhHH
Confidence 221 33456667777777666544332 2333444433333333 4455777777777776543332222 3677
Q ss_pred HHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcch-----hchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhh
Q 001749 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK-----HVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (1018)
Q Consensus 292 ~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 366 (1018)
+.++.+...|.+.- .-+...+..|+.+++.+.+. ..++.........+.+ +++.-....+.+-.+++
T Consensus 408 qalp~i~n~m~D~~-------l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 408 QALPGIENEMSDSC-------LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVD 479 (858)
T ss_pred hhhHHHHHhcccce-------eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHH
Confidence 77777777776432 23455667888888876652 2233333332222222 23333334455555555
Q ss_pred cCh-------HHHHHhHHHHHHHHHhhc--CCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCC------
Q 001749 367 GCA-------EWMKEKLESVLHIVLGAL--RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE------ 431 (1018)
Q Consensus 367 ~~~-------~~~~~~l~~l~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~------ 431 (1018)
+.. ..+.++.+.++..+++.- .+.....|.+++.+||.+...++..+.+.+..+.....+.|...
T Consensus 480 h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q 559 (858)
T COG5215 480 HIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQ 559 (858)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 443 334455555666555542 25566778899999999999988766665555544444433211
Q ss_pred ---------ChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHHhhccchhhHHH
Q 001749 432 ---------SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAER 501 (1018)
Q Consensus 432 ---------~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~al~~l~~~~~~~~~~~~~~ 501 (1018)
...++..-+..|..+++..+..+.+.-+.+|..+++.+++. +..+-..++.+|+.+....++.|..|.+.
T Consensus 560 ~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~ 639 (858)
T COG5215 560 ILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASK 639 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 13578889999999999999999999999999999999988 45677899999999999999999999999
Q ss_pred HHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCC--ChhHHHHHHHHHHHHHHHccc
Q 001749 502 VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE--FSELREYTHGFFSNIAGVLED 579 (1018)
Q Consensus 502 i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~ 579 (1018)
++|.+...+... +..+...++..+|.+++++|. .|.+|...+|..++++++++ +.+++..++++|+.++...|.
T Consensus 640 fiPyl~~aln~~---d~~v~~~avglvgdlantl~~-df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga 715 (858)
T COG5215 640 FIPYLTRALNCT---DRFVLNSAVGLVGDLANTLGT-DFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA 715 (858)
T ss_pred hhHHHHHHhcch---hHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence 999999988443 334566788999999999985 89999999999999999865 678999999999999999999
Q ss_pred CcccchhhhhHHHHhhccCC
Q 001749 580 GFAQYLPLVVPLAFSSCNLD 599 (1018)
Q Consensus 580 ~~~~~l~~i~~~ll~~~~~~ 599 (1018)
+|.+||+.++-.+-..-+.+
T Consensus 716 ~F~~YL~~im~L~qqas~~~ 735 (858)
T COG5215 716 NFESYLDMIMMLFQQASELD 735 (858)
T ss_pred hHHHHHHHHHHHHHHHhccC
Confidence 99999999998776655444
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.7e-20 Score=197.04 Aligned_cols=659 Identities=17% Similarity=0.218 Sum_probs=437.5
Q ss_pred CCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHH
Q 001749 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHF 251 (1018)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ 251 (1018)
..+..|..+++.+..-...... ...|..++|.++.. .+.| ..+......+..++..-.....+++..++-.
T Consensus 375 G~ppmRk~~LR~ltdkar~~ga---~~lfnqiLpllMs~---tLeD---qerhllVkvidriLyklDdlvrpYVhkILvV 445 (1172)
T KOG0213|consen 375 GTPPMRKSALRILTDKARNFGA---GPLFNQILPLLMSP---TLED---QERHLLVKVIDRILYKLDDLVRPYVHKILVV 445 (1172)
T ss_pred CCchhHHHHHHHHHHHHHhhcc---HHHHHHHHHHHcCc---cccc---hhhhhHHHHHHHHHHhhcccchhceeeeEEE
Confidence 5677888888888765444321 23455566655553 2322 3334444444444433333333444333211
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 001749 252 SLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (1018)
Q Consensus 252 l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~ 331 (1018)
+-..+- +.+...|...-+.+++++...+-. .++ ..|. .|-+..|..+|.....++..++..+|
T Consensus 446 ieplli--ded~yar~egreIisnLakaaGla--------~mi----stmr---pDidn~deYVRnttarafavvasalg 508 (1172)
T KOG0213|consen 446 IEPLLI--DEDYYARVEGREIISNLAKAAGLA--------TMI----STMR---PDIDNKDEYVRNTTARAFAVVASALG 508 (1172)
T ss_pred eeccee--cchHHHhhchHHHHHHHHHHhhhH--------HHH----Hhhc---CCcccccHHHHHHHHHHHHHHHHHhC
Confidence 111111 224455666667888777654321 111 1111 12223445788888999999999988
Q ss_pred hhchHHHHHHHHhhhcCC-ChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcC
Q 001749 332 KHVFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
+|.++|++.....|. +|+.|+.++.+..+|+.-..-..-+|+..++..+-.++.|.+..||..++.+++.+++...
T Consensus 509 ---ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~ 585 (1172)
T KOG0213|consen 509 ---IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAAT 585 (1172)
T ss_pred ---cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcC
Confidence 455667777777776 8999999999999999865556678999999999999999999999999999999999988
Q ss_pred HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccc-hHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001749 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF-LDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1018)
Q Consensus 411 ~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~ 489 (1018)
|.-.+.++.++..|.+.........-.+-+.|++.++.-+...-..| -.++|-.+..-+++++.+.+...+..+..++.
T Consensus 586 Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~ 665 (1172)
T KOG0213|consen 586 PYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCA 665 (1172)
T ss_pred CcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhc
Confidence 87777889999999998887665666677788888887775554444 45789999999999999999999999888877
Q ss_pred HhhccchhhH-HHHHH-HHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHH
Q 001749 490 AAEQAFIPYA-ERVLE-LLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTH 567 (1018)
Q Consensus 490 ~~~~~~~~~~-~~i~~-~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 567 (1018)
..|-.- .|. ..++| +++.+......-+.+......++-..++..+|. .+++..++..+.++.+..|.-+.
T Consensus 666 t~Gv~~-~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~-------~~~v~R~v~~lkde~e~yrkm~~ 737 (1172)
T KOG0213|consen 666 TDGVEP-AYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS-------DPIVSRVVLDLKDEPEQYRKMVA 737 (1172)
T ss_pred ccCCCH-HHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc-------hHHHHHHhhhhccccHHHHHHHH
Confidence 655321 122 33444 444444432222333344566777888888875 55666666667888888899899
Q ss_pred HHHHHHHHHccc-Ccccc-hhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhH
Q 001749 568 GFFSNIAGVLED-GFAQY-LPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEK 645 (1018)
Q Consensus 568 ~~l~~l~~~~~~-~~~~~-l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k 645 (1018)
....++...+|. +|..- -..++..++.+++.+.. + -
T Consensus 738 etv~ri~~~lg~~diderleE~lidgil~Afqeqtt-----------------------------------------~-d 775 (1172)
T KOG0213|consen 738 ETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT-----------------------------------------E-D 775 (1172)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc-----------------------------------------c-h
Confidence 999998888875 34322 23445555555442210 0 1
Q ss_pred HHHHHHHHHHHHHccccCcchHHHHHHHhhc--CCChh----HHHHHHHHHHH----------------HHHHHHhhCCc
Q 001749 646 AAATQALGLFALHTKSSYAPFLEESLKILSH--NEGPA----KAREILDTVMN----------------IFIRTMTEDDD 703 (1018)
Q Consensus 646 ~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~--~~~~~----~~~~~~~~~~~----------------~l~~~l~~e~~ 703 (1018)
...+..++.+...++....||+++++..+.. .+.+. ....+...+.+ .|.+.+ .|..
T Consensus 776 ~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl-geey 854 (1172)
T KOG0213|consen 776 SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL-GEEY 854 (1172)
T ss_pred hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc-Cccc
Confidence 1346788888889999999999988776522 11111 12222222221 222333 3778
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHh
Q 001749 704 KDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSM 783 (1018)
Q Consensus 704 ~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 783 (1018)
++++.+.+.++..+....|-....+-+..+++.+..+|++++.. +.+...++++.++...
T Consensus 855 pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheK--------------------Vqen~IdLvg~Iadrg 914 (1172)
T KOG0213|consen 855 PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEK--------------------VQENCIDLVGTIADRG 914 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHH--------------------HHHHHHHHHHHHHhcC
Confidence 99999999999999999987766667788888888888886642 4556678899998874
Q ss_pred CC-ChHHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHH
Q 001749 784 GP-HFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGEL 862 (1018)
Q Consensus 784 ~~-~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l 862 (1018)
.+ .-..-|-.|.-.++.+|..-+. +.|..|+.++|.+.+..|++ +++..++++|...+...|-....+++..
T Consensus 915 pE~v~aREWMRIcfeLlelLkahkK-~iRRaa~nTfG~IakaIGPq------dVLatLlnnLkvqeRq~RvcTtvaIaIV 987 (1172)
T KOG0213|consen 915 PEYVSAREWMRICFELLELLKAHKK-EIRRAAVNTFGYIAKAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIV 987 (1172)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHhcCHH------HHHHHHHhcchHHHHHhchhhhhhhhhh
Confidence 44 1223455566667777765543 56999999999999988874 7888999999988888888888999999
Q ss_pred HhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCC-C-hhhHHHHHHhhCCCCCcHHhhHHHHH
Q 001749 863 CKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLKVLPLKEDFEESMAVYN 940 (1018)
Q Consensus 863 ~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~-~-~~~~l~~~l~~lp~~~d~~e~~~~~~ 940 (1018)
++..++. .++++|.+-... ++..+...+..+++-+..+-++.. + +-.+.|.+-+.|- ..|..-+..+..
T Consensus 988 aE~c~pF------tVLPalmneYrt--Pe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlm-DrD~vhRqta~~ 1058 (1172)
T KOG0213|consen 988 AETCGPF------TVLPALMNEYRT--PEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALM-DRDLVHRQTAMN 1058 (1172)
T ss_pred hhhcCch------hhhHHHHhhccC--chhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhc-cccHHHHHHHHH
Confidence 9987751 345555443332 345566667778887777654432 2 5677777666664 244444455555
Q ss_pred HHHHHH
Q 001749 941 CISTLV 946 (1018)
Q Consensus 941 ~l~~l~ 946 (1018)
.+.++.
T Consensus 1059 ~I~Hl~ 1064 (1172)
T KOG0213|consen 1059 VIKHLA 1064 (1172)
T ss_pred HHHHHh
Confidence 555544
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=9.8e-20 Score=192.83 Aligned_cols=669 Identities=14% Similarity=0.189 Sum_probs=423.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcC--CC-cHHHHHHHHhc-CCChhHHHHHHHHHHHhhhh------hhcc----
Q 001749 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD--PQ-VVPALVQHLRT-AKTPNVRQLAAVLLRKKITG------HWAK---- 70 (1018)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~~~--p~-~~~~l~~~l~~-~~~~~~R~~a~~~l~~~i~~------~w~~---- 70 (1018)
+..+|-...+..+.-|+.|-.+|..=..+ ++ ....++-++-+ +-+.+-|++-.-.+-+.+-+ .+.+
T Consensus 365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILv 444 (1172)
T KOG0213|consen 365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV 444 (1172)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEE
Confidence 34455556678888999998888543222 22 23344444444 33556676665555555421 1110
Q ss_pred ------CCHHHHH-----HHHHH---------HHHHHhh---cCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhh
Q 001749 71 ------LSPQLKQ-----LVKQS---------LIESITL---EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS 127 (1018)
Q Consensus 71 ------l~~~~~~-----~i~~~---------Ll~~l~~---e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~ 127 (1018)
++++... .|..+ .+..+.- ..++.||+..+++++.+++.. ..|.++|+|...+
T Consensus 445 Viepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLkavc 520 (1172)
T KOG0213|consen 445 VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKAVC 520 (1172)
T ss_pred EeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHHh
Confidence 1222211 12221 1222221 147899999999999999875 4689999999999
Q ss_pred cCC-ChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHH
Q 001749 128 QSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (1018)
Q Consensus 128 ~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (1018)
.|. +|+.|+.++.+..+|+...+....+|+..++.++..++.| .+..||..+..+++.+++... +.....|...+..
T Consensus 521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~D-e~qkVR~itAlalsalaeaa~-Pygie~fDsVlkp 598 (1172)
T KOG0213|consen 521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKD-EQQKVRTITALALSALAEAAT-PYGIEQFDSVLKP 598 (1172)
T ss_pred ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcc-cchhhhhHHHHHHHHHHHhcC-CcchHHHHHHHHH
Confidence 997 8999999999999999999999999999999999999999 889999999999999987663 3335555555555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhH-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhH---H
Q 001749 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY---N 282 (1018)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~---~ 282 (1018)
+..- +.........+-+++++.+.-....-...++ ..++-.+..=.. ..+++.+...+.++..|+...+ .
T Consensus 599 Lwkg----ir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~--sPDeemkkivLKVv~qcc~t~Gv~~~ 672 (1172)
T KOG0213|consen 599 LWKG----IRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFG--SPDEEMKKIVLKVVKQCCATDGVEPA 672 (1172)
T ss_pred HHHH----HHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHhcccCCCHH
Confidence 5554 3332333333334444444322211111111 112222222112 2455666666666666654221 1
Q ss_pred Hhhh------------------cCChHHHHHHHhhhhccC---------CCCCCCCCCcHHHHHHHHHHHHHHHcc----
Q 001749 283 SLKK------------------HKLVIPILQVMCPLLAES---------NEAGEDDDLAPDRAAAEVIDTMALNLA---- 331 (1018)
Q Consensus 283 ~~~~------------------~~~~~~i~~~l~~~l~~~---------~~d~~d~~~~~~~~a~~~l~~l~~~~~---- 331 (1018)
+.+. .....+++.+-..+-... -++..|+....|+....+++.+...+|
T Consensus 673 y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~di 752 (1172)
T KOG0213|consen 673 YIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADI 752 (1172)
T ss_pred HHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccc
Confidence 1000 001122222222211111 122234445567888889999888877
Q ss_pred -hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcC
Q 001749 332 -KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 332 -~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
......++.-+...++.++-... .-+..|+.++.......++++++++..++..|+++++.||+.|+..++.++..+.
T Consensus 753 derleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 753 DERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 22233444444445555443332 4557788888877777789999999999999999999999999999999987654
Q ss_pred HHHH-HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc-cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001749 411 PEIV-SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1018)
Q Consensus 411 ~~~~-~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~ 488 (1018)
..-. +.+..+=..|.+.|....+.|--..+.|+..++...+ ..+.|-...+++.|..+|.+...+|++..+..+|.++
T Consensus 832 tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 832 TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIA 911 (1172)
T ss_pred hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHH
Confidence 3211 2233344456778888889999999999999988874 4567778899999999999999999999999999999
Q ss_pred HHhhccch--hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHH
Q 001749 489 AAAEQAFI--PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYT 566 (1018)
Q Consensus 489 ~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 566 (1018)
...++... .++.-++.++.. + ......+|..+.+++|.+++++|+ ++++..+++.+...+...|...
T Consensus 912 drgpE~v~aREWMRIcfeLlel-L---kahkK~iRRaa~nTfG~IakaIGP-------qdVLatLlnnLkvqeRq~RvcT 980 (1172)
T KOG0213|consen 912 DRGPEYVSAREWMRICFELLEL-L---KAHKKEIRRAAVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCT 980 (1172)
T ss_pred hcCcccCCHHHHHHHHHHHHHH-H---HHHHHHHHHHHHhhhhHHHHhcCH-------HHHHHHHHhcchHHHHHhchhh
Confidence 98887433 233333333222 1 123345788999999999999998 7888888888886666666666
Q ss_pred HHHHHHHHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHH
Q 001749 567 HGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKA 646 (1018)
Q Consensus 567 ~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~ 646 (1018)
--+++-+++.+|. -.++|.|++-- +++.+....
T Consensus 981 tvaIaIVaE~c~p------FtVLPalmneY-----------------------------------------rtPe~nVQn 1013 (1172)
T KOG0213|consen 981 TVAIAIVAETCGP------FTVLPALMNEY-----------------------------------------RTPEANVQN 1013 (1172)
T ss_pred hhhhhhhhhhcCc------hhhhHHHHhhc-----------------------------------------cCchhHHHH
Confidence 6677777776653 25778887522 244445577
Q ss_pred HHHHHHHHHHHHccccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCccc
Q 001749 647 AATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAV 726 (1018)
Q Consensus 647 ~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~ 726 (1018)
+.+++++-+...+|+.-..|+.. +.|.+..++. |+|..-+..+...+..+.-.+.....
T Consensus 1014 GVLkalsf~FeyigemskdYiya--------------------v~PlleDAlm-DrD~vhRqta~~~I~Hl~Lg~~g~g~ 1072 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIYA--------------------VTPLLEDALM-DRDLVHRQTAMNVIKHLALGVPGTGC 1072 (1172)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHH--------------------hhHHHHHhhc-cccHHHHHHHHHHHHHHhcCCCCcCc
Confidence 88899998888777655555554 5555666654 55555554455444443222111112
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCC
Q 001749 727 EPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP 785 (1018)
Q Consensus 727 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 785 (1018)
.+.+-.+++.++..+-+ ....++..+-+++..+..++|.
T Consensus 1073 eda~iHLLN~iWpNIle--------------------~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1073 EDALIHLLNLIWPNILE--------------------TSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred HHHHHHHHHHhhhhhcC--------------------CChHHHHHHHHHHHHHHHHhch
Confidence 33344444444443332 2234666777888888888776
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=1.1e-17 Score=204.85 Aligned_cols=782 Identities=12% Similarity=0.108 Sum_probs=483.2
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC-----------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhc
Q 001749 3 QSLELLLIQFLMP--DNDARRQAEDQIKRLAKD-----------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWA 69 (1018)
Q Consensus 3 ~~l~~~l~~~~s~--d~~~r~~A~~~L~~~~~~-----------p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~ 69 (1018)
.+...+++.+.++ ..+.|++|...|..+.+. .++++.|+..|.+ .++.+|..|+..+.+.-.+
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~~--- 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCKE--- 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC---
Confidence 4566788888755 678899999998876542 3467888888864 4688998888666665321
Q ss_pred cCCHHHH-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCc------cchHHHHHHhhcCCCh---HHH
Q 001749 70 KLSPQLK-----QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW------PDLLPFLFQFSQSEQE---EHR 135 (1018)
Q Consensus 70 ~l~~~~~-----~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w------~~ll~~l~~~~~s~~~---~~r 135 (1018)
++.+ ....+.|+..|. +.+...|..++.+|..++.....+..| +..+|.|...+++.+. ..+
T Consensus 89 ---e~nk~~Iv~~GaIppLV~LL~-sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 89 ---EDLRVKVLLGGCIPPLLSLLK-SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred ---HHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 2222 233446777776 468999999999999998653111122 5678999999887642 234
Q ss_pred HHHHHHHHHhhhhhhccccccH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHH
Q 001749 136 EVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC 214 (1018)
Q Consensus 136 ~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 214 (1018)
+.+..+|..++...+..-...+ ...++.+...+.+ +++.++..|+.++..++...++......-.+.+|.+++.
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~L---- 239 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS-GNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKL---- 239 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH----
Confidence 5567788888754432211111 2367888888888 889999999999988876654332222335678888886
Q ss_pred hhc-CCHHHHHHHHHHHHHHhcCCccchhHhHH-HHHHHHHHHhcCCC-------CChHHHHHHHHHHHHHHHHhHHHhh
Q 001749 215 LAS-GEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHN-------LEPNTRHQAIQIISWLAKYKYNSLK 285 (1018)
Q Consensus 215 l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~l~~~~~~~~-------~~~~~r~~a~~~l~~~~~~~~~~~~ 285 (1018)
+.+ .+..++..|.++|..++...+..-+..+. ..++.+++.+..+. .....+..|+..+.+++...
T Consensus 240 L~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----- 314 (2102)
T PLN03200 240 LGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----- 314 (2102)
T ss_pred HccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-----
Confidence 433 45688999999999999764332222111 12233333333221 23456888999998888532
Q ss_pred hcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc--h---hchH--HHHHHHHhhhcCCChhH-HHHH
Q 001749 286 KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--K---HVFP--PVFEFASVSCQNASPKY-REAA 357 (1018)
Q Consensus 286 ~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~--~---~~~~--~~~~~l~~~l~~~~~~~-r~aa 357 (1018)
..+++.+...+....+ ......+..++..+...+. . ..+. .+.+.+.++++++++.. ...+
T Consensus 315 -----~~ll~~L~~ll~s~rd------~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V 383 (2102)
T PLN03200 315 -----SALILYLGELSESPRS------PAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERI 383 (2102)
T ss_pred -----hhhHHHHHHhhcccch------HHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHH
Confidence 2333333333322110 1111122334444432222 1 1111 23355666677665543 5566
Q ss_pred HHHHHHHhhcCh--HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhccCCChH
Q 001749 358 VTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDE 434 (1018)
Q Consensus 358 l~~l~~l~~~~~--~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~ 434 (1018)
.-++..+..+.. ..+. -....+.++..+...+..+|..+++++..++..-........ ...+|.|++.|.+++..
T Consensus 384 ~eALasl~gN~~l~~~L~--~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~ 461 (2102)
T PLN03200 384 IEALASLYGNAYLSRKLN--HAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQ 461 (2102)
T ss_pred HHHHHHhcCChHHHHHHH--hccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence 666655443321 1111 134667788888888999999999999999977433332222 45789999999999889
Q ss_pred HHHHHHHHHHHHHhhhccccccchH-HHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHh
Q 001749 435 VKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMV 511 (1018)
Q Consensus 435 v~~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~ 511 (1018)
+|..+++++++++....+.-....+ ..++.|.++|.+++..+|+.|.++++.++.. .++..... ...+|.|.+++.
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~ 540 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLK 540 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHh
Confidence 9999999999998755433222232 5789999999999999999999999999863 22333333 236677777775
Q ss_pred ccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCc-c-cc--hhh
Q 001749 512 LTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGF-A-QY--LPL 587 (1018)
Q Consensus 512 ~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~-~-~~--l~~ 587 (1018)
.. +.+.+..+..++..+...-.. ..+..++..+..+++..+..++..++++........ . .. -..
T Consensus 541 sg---d~~~q~~Aa~AL~nLi~~~d~--------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g 609 (2102)
T PLN03200 541 NG---GPKGQEIAAKTLTKLVRTADA--------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND 609 (2102)
T ss_pred CC---CHHHHHHHHHHHHHHHhccch--------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc
Confidence 43 335566777777777643222 122334444666777888888888888866443321 1 00 123
Q ss_pred hhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHccccCcchH
Q 001749 588 VVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFL 667 (1018)
Q Consensus 588 i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~ 667 (1018)
.+|.|.+.++.. .-..|+.|+.+|..++...+...
T Consensus 610 gL~~Lv~LL~sg-----------------------------------------s~~ikk~Aa~iLsnL~a~~~d~~---- 644 (2102)
T PLN03200 610 ALRTLIQLLSSS-----------------------------------------KEETQEKAASVLADIFSSRQDLC---- 644 (2102)
T ss_pred cHHHHHHHHcCC-----------------------------------------CHHHHHHHHHHHHHHhcCChHHH----
Confidence 455555555321 12348889999998876443211
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCccc-HHHHH-HHHHHHHHHHhhhh
Q 001749 668 EESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAV-EPYMS-RLVDATLLLLREES 745 (1018)
Q Consensus 668 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~-~~~~~-~i~~~l~~~l~~~~ 745 (1018)
..++ ....+|.++..+. ..+.++..++..++..+... +.... ...+. ..++.+.++|+..
T Consensus 645 ~avv---------------~agaIpPLV~LLs-s~~~~v~keAA~AL~nL~~~-~~~~q~~~~v~~GaV~pL~~LL~~~- 706 (2102)
T PLN03200 645 ESLA---------------TDEIINPCIKLLT-NNTEAVATQSARALAALSRS-IKENRKVSYAAEDAIKPLIKLAKSS- 706 (2102)
T ss_pred HHHH---------------HcCCHHHHHHHHh-cCChHHHHHHHHHHHHHHhC-CCHHHHHHHHHcCCHHHHHHHHhCC-
Confidence 1111 1134566666665 45556777777777777752 22111 11121 2455555666431
Q ss_pred hhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHH-HHHHHHHHHhhccCCCccchhhhhHhHHHHHhh
Q 001749 746 TCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIF-AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARD 824 (1018)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~ 824 (1018)
+..+.+.+...+..+++. ++...... ...+|.++++++++++ ..|..|...+..+.+.
T Consensus 707 -------------------d~~v~e~Al~ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~-~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 707 -------------------SIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVLREGTL-EGKRNAARALAQLLKH 765 (2102)
T ss_pred -------------------ChHHHHHHHHHHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCCh-HHHHHHHHHHHHHHhC
Confidence 113445555666666543 22222223 3478999999998875 5699999999999987
Q ss_pred cCcc--hHhhH--HhhHHHHHHhcCCCChHHHHH--HHHHHHHHHhhcC-cch--hhH-----HHHHHHhhhhccCCCCC
Q 001749 825 MGSP--IAAYV--DRVMPLVLKELASPDAMNRRN--AAFCVGELCKNGG-ESA--LKY-----YGDILRGLYPLFGDSEP 890 (1018)
Q Consensus 825 ~~~~--~~~~~--~~l~~~l~~~l~~~~~~vr~~--a~~~lg~l~~~~~-~~~--~~~-----~~~il~~L~~~l~~~~~ 890 (1018)
.+.. +..+. --.+.+++..|+..|.+...+ |..+|+.+++... ..+ .|+ .|.-+..|+..+ .+.
T Consensus 766 ~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l--~~~ 843 (2102)
T PLN03200 766 FPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL--AEG 843 (2102)
T ss_pred CChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH--HcC
Confidence 6532 22332 345678888899887777776 9999999998532 222 122 123344555555 345
Q ss_pred CchhHhHHHHHHHHHHHhCCCCC
Q 001749 891 DDAVRDNAAGAVARMIMVNPQSI 913 (1018)
Q Consensus 891 ~~~~~~na~~al~~l~~~~~~~~ 913 (1018)
++.+.|.|+..+.|++...|..+
T Consensus 844 ~p~~~~kai~il~~~~~~~~~~~ 866 (2102)
T PLN03200 844 HPLVQDKAIEILSRLCRDQPVVL 866 (2102)
T ss_pred ChHHHHHHHHHHHHHhccChhHH
Confidence 68899999999999999877654
No 19
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.5e-15 Score=165.93 Aligned_cols=506 Identities=14% Similarity=0.196 Sum_probs=334.4
Q ss_pred hHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHH
Q 001749 2 AQSLELLLIQFLMP-DNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (1018)
Q Consensus 2 ~~~l~~~l~~~~s~-d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~ 80 (1018)
..+++.++..++++ +.+....+++.|..++..|+.+..-.++++....+++|.++|+.|.-+|+++|+..+++....++
T Consensus 6 Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL~ 85 (982)
T KOG2022|consen 6 IATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQLK 85 (982)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHHH
Confidence 35778889999876 78888999999999999999999889988887788999999999999999999999999999999
Q ss_pred HHHHHHHhhc--CCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCC-h----HHH-HHHHHHHHHhhhhhh--
Q 001749 81 QSLIESITLE--HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQ-E----EHR-EVALILFSSLTETIG-- 150 (1018)
Q Consensus 81 ~~Ll~~l~~e--~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~-~----~~r-~~al~~l~~l~~~~~-- 150 (1018)
..++..+... ....|-+..+-.++.+.-+..| +.||+-+..++..++.+. + ..+ ..-+..|..+.+...
T Consensus 86 ~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q~~ 164 (982)
T KOG2022|consen 86 LKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQHV 164 (982)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhhhc
Confidence 9999988743 2455777777777777666666 599999999999887532 1 111 233444443333221
Q ss_pred -----------ccccccHHHHHHHHHHhcCCC--CCH-----HHHHHHHHHHHHhhcccCChhh-H--------------
Q 001749 151 -----------QTFRPHFADMQALLLKCLQDE--TSN-----RVRIAALKAIGSFLEFTNDGAE-V-------------- 197 (1018)
Q Consensus 151 -----------~~~~~~~~~l~~~l~~~l~d~--~~~-----~vr~~a~~~l~~~~~~~~~~~~-~-------------- 197 (1018)
..+......+.+++...+... ..+ -.+.++++|+..++.+..-+.. .
T Consensus 165 ~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~~l~~s 244 (982)
T KOG2022|consen 165 TLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLDVLGQS 244 (982)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhh
Confidence 111222233334443344321 122 4677889998888764421100 0
Q ss_pred ------------------------------------HHHHh----hHHHHHHHHHH------HhhcCC--HHHHHHHHHH
Q 001749 198 ------------------------------------VKFRE----FIPSILNVSRQ------CLASGE--EDVAVIAFEI 229 (1018)
Q Consensus 198 ------------------------------------~~~~~----~~~~ll~~l~~------~l~~~~--~~~~~~a~~~ 229 (1018)
..+.+ +++.....+.. ...+.| .+.....+.+
T Consensus 245 ~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~~i 324 (982)
T KOG2022|consen 245 TEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVTFLAI 324 (982)
T ss_pred ccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 00111 11111111111 111122 2222333333
Q ss_pred HHHHhcCCccch---------hHhHHHHHHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHhHHHhh------h----c
Q 001749 230 FDELIESPAPLL---------GDSVKSIVHFSLEVSSSHN---LEPNTRHQAIQIISWLAKYKYNSLK------K----H 287 (1018)
Q Consensus 230 l~~l~~~~~~~~---------~~~~~~li~~l~~~~~~~~---~~~~~r~~a~~~l~~~~~~~~~~~~------~----~ 287 (1018)
....++.+.+.+ ...+..+++.++.+.+-+. .++.+....+.||.++.+..-.... + .
T Consensus 325 ~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~ 404 (982)
T KOG2022|consen 325 TVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQILSQ 404 (982)
T ss_pred HHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchhHHHH
Confidence 333333332211 1223334444444433322 3445667788899988764322110 1 1
Q ss_pred CChHHHHHHHhhhhccCC--------CCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCC-----hhHH
Q 001749 288 KLVIPILQVMCPLLAESN--------EAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS-----PKYR 354 (1018)
Q Consensus 288 ~~~~~i~~~l~~~l~~~~--------~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~-----~~~r 354 (1018)
+....+++.+++.+.-++ .|+.+.-.+.|+.-.+++...-..+|+..+..+...+.+++.+.+ |..-
T Consensus 405 qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~t 484 (982)
T KOG2022|consen 405 QIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRT 484 (982)
T ss_pred HHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHH
Confidence 233445556665554333 333333345566667777777778888888888888888887766 9999
Q ss_pred HHHHHHHHHHhhcChHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCCh
Q 001749 355 EAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD 433 (1018)
Q Consensus 355 ~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 433 (1018)
++.+..+..+++.......+.++.++...... +.-.++..-.++...+|.++.+++.+ .-|+...+|.|+.+|..+.
T Consensus 485 Eaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~-P~~ln~sl~~L~~~Lh~sk- 562 (982)
T KOG2022|consen 485 EACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH-PMYLNPSLPLLFQGLHNSK- 562 (982)
T ss_pred HHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcC-CcccCchHHHHHHHhcCch-
Confidence 99999999999988877777777777765443 33458888899999999999998642 3478899999999998653
Q ss_pred HHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC--CHhHHHHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHH
Q 001749 434 EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFM 510 (1018)
Q Consensus 434 ~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~al~~l~~~~~-~~~~~~~~~i~~~l~~~l 510 (1018)
....+...+..+|+.++..+.||.+.++..+...+... ....|..++.+||.+..... +...+|+..++..+..-+
T Consensus 563 -~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 563 -ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQL 641 (982)
T ss_pred -HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHH
Confidence 33456666999999999999999999999999998875 57899999999999988776 556678777666555444
Q ss_pred h
Q 001749 511 V 511 (1018)
Q Consensus 511 ~ 511 (1018)
+
T Consensus 642 e 642 (982)
T KOG2022|consen 642 E 642 (982)
T ss_pred H
Confidence 4
No 20
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.9e-16 Score=168.95 Aligned_cols=592 Identities=13% Similarity=0.169 Sum_probs=349.4
Q ss_pred ChHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhccCCHHHHH
Q 001749 1 MAQSLELLLIQFLMP--DNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (1018)
Q Consensus 1 m~~~l~~~l~~~~s~--d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~ 77 (1018)
|++-++|++.+...| |...|+||.+.+++++..|+.+..+.+++... .++.+|.++...|...++..+...+...++
T Consensus 1 ~mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 1 MMDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred CchHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 788899999999765 89999999999999999999999999998764 689999999999999988877778889999
Q ss_pred HHHHHHHHHHhh-----c---CCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChH-HHHHHHHHHHHhhhh
Q 001749 78 LVKQSLIESITL-----E---HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEE-HREVALILFSSLTET 148 (1018)
Q Consensus 78 ~i~~~Ll~~l~~-----e---~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~-~r~~al~~l~~l~~~ 148 (1018)
.+|..+...+.- + ..+.++++++++++.+.-.++| ..|+.++..+...+.-+... -...-++++..+-+.
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 999999887762 1 2567999999999999988888 48999998888776532211 111222222222211
Q ss_pred hhcc------------------c-cccHHHHHHHHHHhcC---CCCC---------------------------------
Q 001749 149 IGQT------------------F-RPHFADMQALLLKCLQ---DETS--------------------------------- 173 (1018)
Q Consensus 149 ~~~~------------------~-~~~~~~l~~~l~~~l~---d~~~--------------------------------- 173 (1018)
..+. + ...++.+.....+++. ...+
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy 239 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLY 239 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHH
Confidence 1100 0 0112222222222221 1012
Q ss_pred -----HHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHH--HHhhcCCHHHHHHHHHHH-----------HHHhc
Q 001749 174 -----NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR--QCLASGEEDVAVIAFEIF-----------DELIE 235 (1018)
Q Consensus 174 -----~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~--~~l~~~~~~~~~~a~~~l-----------~~l~~ 235 (1018)
.++|.+|+.|+..++....+|.+...+-+.+...++... ..-+..|.+.-....+.+ .++..
T Consensus 240 ~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lns 319 (980)
T KOG2021|consen 240 KFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNS 319 (980)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhh
Confidence 445555555555555544444332222222222222211 111112333322222222 22211
Q ss_pred CCccch----hHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHh-hh---cCChHHHHHHHhhhhcc----
Q 001749 236 SPAPLL----GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL-KK---HKLVIPILQVMCPLLAE---- 303 (1018)
Q Consensus 236 ~~~~~~----~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~-~~---~~~~~~i~~~l~~~l~~---- 303 (1018)
...+.. ...+-.+++++++.+.+. .+++....+.||+.....-.+.. .+ ...+..++..++..++-
T Consensus 320 eld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy 397 (980)
T KOG2021|consen 320 ELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMY 397 (980)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHh
Confidence 111111 112233667777777765 33455566677765443221111 11 12456677777766653
Q ss_pred -CCCCCCC-CC----CcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhh---cCCChhHHHHHHHHHHHHhhcChHHHH-
Q 001749 304 -SNEAGED-DD----LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSC---QNASPKYREAAVTAIGIISEGCAEWMK- 373 (1018)
Q Consensus 304 -~~~d~~d-~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~- 373 (1018)
++++..+ |+ .+.|+.--..++.++..-|...+..+-+.+...+ +..+|..-+.|+..+..++|+.+....
T Consensus 398 ~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~ 477 (980)
T KOG2021|consen 398 FNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFG 477 (980)
T ss_pred hcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccccccc
Confidence 3332111 11 2456666666777776666545555555444433 346799999999999999997653211
Q ss_pred ---------HhHHHHHHHHHh--hcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHH--HhccCCChHHHHHHH
Q 001749 374 ---------EKLESVLHIVLG--ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCIL--NALEDESDEVKEKSY 440 (1018)
Q Consensus 374 ---------~~l~~l~~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~--~~l~~~~~~v~~~a~ 440 (1018)
..+-.+++.++. ...++|+.|+-.-+..+-++...+..+ ..+++.++...+ .++.+.+.+||.+|.
T Consensus 478 ~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e-sq~ip~vL~aFld~rglhn~ne~Vr~Raw 556 (980)
T KOG2021|consen 478 LNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE-SQKIPLVLNAFLDSRGLHNKNENVRLRAW 556 (980)
T ss_pred ccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHccchhccccccccchHHH
Confidence 123344444443 246889999988888888877666432 235666666665 456667788999999
Q ss_pred HHHHHHHhhhccccccchHHHHHHHHHhhcCC------------CHhHHHHHHHHHHHHHHHhh---ccchhhHHH----
Q 001749 441 YALAAFCEDMGEEILPFLDPLMGKLLAALENS------------PRNLQETCMSAIGSVAAAAE---QAFIPYAER---- 501 (1018)
Q Consensus 441 ~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~------------~~~vr~~al~al~~l~~~~~---~~~~~~~~~---- 501 (1018)
+.+..+++..++.+.||.++++..+..+|... ...-+....+++|.++.... +.-..|.+.
T Consensus 557 YLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litp 636 (980)
T KOG2021|consen 557 YLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITP 636 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccCh
Confidence 99999999999999999999999999988332 11224456667765543321 111223322
Q ss_pred -----HHHHHHHHHhccCc-hhh-hhHHHHHHHHHHHHHhhhhhhc-------CCChHHHHHHHHhccC--CCChhHHHH
Q 001749 502 -----VLELLKIFMVLTND-EDL-RSRARATELLGLVAESVGRARM-------EPILPPFVEAAISGFG--LEFSELREY 565 (1018)
Q Consensus 502 -----i~~~l~~~l~~~~~-~~~-~~r~~a~~~l~~l~~~~g~~~~-------~~~~~~l~~~l~~~l~--~~~~~~~~~ 565 (1018)
.+..+...+....+ +.. .-...++-++|.+++....... ......+.+.++..+. .....+|..
T Consensus 637 l~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsa 716 (980)
T KOG2021|consen 637 LILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSA 716 (980)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHH
Confidence 22222222322211 111 1122334455555554321110 0011223333333232 124578999
Q ss_pred HHHHHHHHHHHcccCcccchhhhhHHHHhhc
Q 001749 566 THGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (1018)
Q Consensus 566 ~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~ 596 (1018)
+-..+++|..++|.+..||+|+.+..+++.+
T Consensus 717 vrft~hRmI~~lg~~vlPfipklie~lL~s~ 747 (980)
T KOG2021|consen 717 VRFTFHRMIPILGNKVLPFIPKLIELLLSST 747 (980)
T ss_pred HHHHHHHHHHhcchhhhcchHHHHHHHHhcC
Confidence 9999999999999999999999999999755
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=3.6e-17 Score=200.28 Aligned_cols=796 Identities=14% Similarity=0.148 Sum_probs=465.7
Q ss_pred HHHHHHhhc-CCHHHHHHHHHHHHHHHcccCCC----CCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcccccc
Q 001749 82 SLIESITLE-HSAPVRRASANVVSIIAKYAVPA----GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH 156 (1018)
Q Consensus 82 ~Ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~~~----~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~ 156 (1018)
.+++.|.+. .++..++.+..-+..+++..... ..-...+|.|...+.+++...+..+..++..+.......-.-.
T Consensus 17 ~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv 96 (2102)
T PLN03200 17 QCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVL 96 (2102)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344444431 13444555544444444432110 0124468889999988899999999888888875422110001
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccC-Chh--hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 001749 157 FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGA--EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDEL 233 (1018)
Q Consensus 157 ~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~-~~~--~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l 233 (1018)
....++.+..+|.+ .+.+.|..|+.+|..+..... +.. ........+|.++..+...- ..+.-+...+..+|..+
T Consensus 97 ~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gs-k~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 97 LGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGN-KQDKVVEGLLTGALRNL 174 (2102)
T ss_pred HcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCc-hhhHHHHHHHHHHHHHH
Confidence 24567788888887 689999999999999876542 110 11112567888888753321 01122345566788888
Q ss_pred hcCCccchhHhHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHH---HhhhcCChHHHHHHHhhhhccCCCCCC
Q 001749 234 IESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN---SLKKHKLVIPILQVMCPLLAESNEAGE 309 (1018)
Q Consensus 234 ~~~~~~~~~~~~~-~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~~~~~~i~~~l~~~l~~~~~d~~ 309 (1018)
.......-...+. ..++.+...+.++ ++..+..|..++..++...+. .+...+. ++.++.+|.+..
T Consensus 175 s~~~en~~~~IIeaGaVp~LV~LLsS~--d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGa----VP~LV~LL~sg~---- 244 (2102)
T PLN03200 175 CGSTDGFWSATLEAGGVDILVKLLSSG--NSDAQANAASLLARLMMAFESSISKVLDAGA----VKQLLKLLGQGN---- 244 (2102)
T ss_pred hcCccchHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCC----HHHHHHHHccCC----
Confidence 8766544332222 2445555555543 678888888888777654332 1222233 455666664321
Q ss_pred CCCCcHHHHHHHHHHHHHHHcc--------hhchHHHHHHHHhh----hcC-CChhHHHHHHHHHHHHhhcChHHHHHhH
Q 001749 310 DDDLAPDRAAAEVIDTMALNLA--------KHVFPPVFEFASVS----CQN-ASPKYREAAVTAIGIISEGCAEWMKEKL 376 (1018)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~--------~~~~~~~~~~l~~~----l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l 376 (1018)
+..++..|..+|..++..-. ...++.++..+..- +++ .+...++.|.++++.++.+.
T Consensus 245 --~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~-------- 314 (2102)
T PLN03200 245 --EVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM-------- 314 (2102)
T ss_pred --ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc--------
Confidence 23578888999988886422 12344455443210 111 12334788999999999875
Q ss_pred HHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhcCHHHH--Hhh--hhHHHHHHHhccCCChH-HHHHHHHHHHHHHhhh
Q 001749 377 ESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEIV--SHY--ESVLPCILNALEDESDE-VKEKSYYALAAFCEDM 450 (1018)
Q Consensus 377 ~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~--~~~--~~~l~~l~~~l~~~~~~-v~~~a~~al~~l~~~~ 450 (1018)
..+++.+...+++. +..+...+++++..+...+..... ..+ ..+.+.|.+.+.++++. ++..+..+|..++.+.
T Consensus 315 ~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~ 394 (2102)
T PLN03200 315 SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNA 394 (2102)
T ss_pred hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCCh
Confidence 34666666666544 455566778888888554432211 112 24668899999887665 5788888887654433
Q ss_pred --ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH-HHHHHHHHHHHhccCchhhhhHHHHHHH
Q 001749 451 --GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATEL 527 (1018)
Q Consensus 451 --~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~r~~a~~~ 527 (1018)
...+ +-.+..+.|+.++...+..+++.++.++..++....+...... ...+|.|.+++...+ ...+..+..+
T Consensus 395 ~l~~~L--~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s---~~iQ~~A~~~ 469 (2102)
T PLN03200 395 YLSRKL--NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS---EQQQEYAVAL 469 (2102)
T ss_pred HHHHHH--HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHH
Confidence 1111 1135667788899988999999999999998855433222222 225677777776532 2455677778
Q ss_pred HHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccch--hhhhHHHHhhccCCCCCccC
Q 001749 528 LGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYL--PLVVPLAFSSCNLDDGSAVD 605 (1018)
Q Consensus 528 l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~ll~~~~~~~~~~~~ 605 (1018)
++.++..-......-.-...++.+++.++.++..+++.+..++++++.. ..+....+ ..++|.+++.++..
T Consensus 470 L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sg------ 542 (2102)
T PLN03200 470 LAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNG------ 542 (2102)
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCC------
Confidence 8877642211111000012344444556777889999999999999873 33333334 35788888776421
Q ss_pred CCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHccccCcchHHHHHHHhhcCCChhHHHH
Q 001749 606 IDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKARE 685 (1018)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 685 (1018)
..+.|..|+.+|..++..-...
T Consensus 543 -----------------------------------d~~~q~~Aa~AL~nLi~~~d~~----------------------- 564 (2102)
T PLN03200 543 -----------------------------------GPKGQEIAAKTLTKLVRTADAA----------------------- 564 (2102)
T ss_pred -----------------------------------CHHHHHHHHHHHHHHHhccchh-----------------------
Confidence 1133788888888876532110
Q ss_pred HHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHH---HHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCc
Q 001749 686 ILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPY---MSRLVDATLLLLREESTCQQPDNDSDIEDDDDT 762 (1018)
Q Consensus 686 ~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~---~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 762 (1018)
.++.++..+.. +++.+...+++.++.++........... ...-++.+.+++....
T Consensus 565 ----~I~~Lv~LLls-dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs----------------- 622 (2102)
T PLN03200 565 ----TISQLTALLLG-DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK----------------- 622 (2102)
T ss_pred ----HHHHHHHHhcC-CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-----------------
Confidence 11223333432 3344455556666665553322110000 0123444555554411
Q ss_pred hhhHHHHHHHHhHHHHHHHHhCCChHHHH-HHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcch-HhhHH-hhHHH
Q 001749 763 AHDEVIMDAVSDLLPAFAKSMGPHFAPIF-AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPI-AAYVD-RVMPL 839 (1018)
Q Consensus 763 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~-~~~~~-~l~~~ 839 (1018)
......++.++..++....+.....+ ...+|+++..++..+. ..+..+...|+.+...+...- ..+.. ..+|+
T Consensus 623 ---~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~-~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~p 698 (2102)
T PLN03200 623 ---EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE-AVATQSARALAALSRSIKENRKVSYAAEDAIKP 698 (2102)
T ss_pred ---HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh-HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHH
Confidence 12345555666666653333222223 3488999999987665 457788888888887433322 22333 48999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCC--C-C--
Q 001749 840 VLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQS--I-P-- 914 (1018)
Q Consensus 840 l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~--~-~-- 914 (1018)
+++.+.+++.+++..|+.+|+.++..+.....-.-...++.|+.++.. .+...++||+.++.++++.+|.. + .
T Consensus 699 L~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~--G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~ 776 (2102)
T PLN03200 699 LIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE--GTLEGKRNAARALAQLLKHFPVDDVLKDSV 776 (2102)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh--CChHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 999999999999999999999999876432111113456777778753 35778999999999999987632 1 1
Q ss_pred -hhhHHHHHHhhCCCCCcHHhh--HHHHHHHHHHHhhcC------hh--hhhhhhHHHHHHHHHhcCCCCChHHHHHHHH
Q 001749 915 -LNQVLPVLLKVLPLKEDFEES--MAVYNCISTLVLSSN------PQ--ILSLVPELVNLFAEVVVSPEESSEVKSQVGM 983 (1018)
Q Consensus 915 -~~~~l~~~l~~lp~~~d~~e~--~~~~~~l~~l~~~~~------~~--~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 983 (1018)
-...+..+++.|.- .|.+.. ..+++.|..+....+ |. ++--.|.=+..+.+.+.+ ..+..+.+.++
T Consensus 777 ~~~g~v~~l~~~L~~-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~--~~p~~~~kai~ 853 (2102)
T PLN03200 777 QCRGTVLALVDLLNS-TDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE--GHPLVQDKAIE 853 (2102)
T ss_pred HHhCcHHHHHHHHhc-CCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc--CChHHHHHHHH
Confidence 12344556666643 222222 236677776665321 11 222233445555555533 34568888899
Q ss_pred HHHHHHHHhHhhHHHHH
Q 001749 984 AFSHLISLYGQQMQPLL 1000 (1018)
Q Consensus 984 ~l~~~~~~~~~~~~~~~ 1000 (1018)
++.++=++.|...-..+
T Consensus 854 il~~~~~~~~~~~~~~~ 870 (2102)
T PLN03200 854 ILSRLCRDQPVVLGDLI 870 (2102)
T ss_pred HHHHHhccChhHHHHHH
Confidence 99988877665443333
No 22
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=5e-18 Score=176.55 Aligned_cols=667 Identities=14% Similarity=0.161 Sum_probs=402.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcC--CC-cHHHHHHHHhc-CCChhHHHHHHHHHHHhhhh------hhcc------
Q 001749 7 LLLIQFLMPDNDARRQAEDQIKRLAKD--PQ-VVPALVQHLRT-AKTPNVRQLAAVLLRKKITG------HWAK------ 70 (1018)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~~~~~--p~-~~~~l~~~l~~-~~~~~~R~~a~~~l~~~i~~------~w~~------ 70 (1018)
-+|-...+.++.-|+.+-..|..-.-+ |. ....++-++-+ +-+.+-|++-.-++-+.+-+ .+.+
T Consensus 172 rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv 251 (975)
T COG5181 172 RLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVV 251 (975)
T ss_pred HHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEe
Confidence 344445677888888888777532222 33 23344444444 33556676666666555421 1110
Q ss_pred ----CCHHHHH-----HHHHHHHHHH---------h---hcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcC
Q 001749 71 ----LSPQLKQ-----LVKQSLIESI---------T---LEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS 129 (1018)
Q Consensus 71 ----l~~~~~~-----~i~~~Ll~~l---------~---~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s 129 (1018)
++++.+. .|..+|...- . ...++.||+..+++.+.++... ..++++|++...+.|
T Consensus 252 ~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl~a~c~S 327 (975)
T COG5181 252 GPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFLEALCGS 327 (975)
T ss_pred eccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHHHHHhcC
Confidence 1221111 1222221111 0 1257899999999999999875 468999999999998
Q ss_pred C-ChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHH
Q 001749 130 E-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (1018)
Q Consensus 130 ~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll 208 (1018)
. +|+.|+.+..+..+|++..+....+|+..++..+..++.| .+..||..+..+++.+++... +.....|...+-.+.
T Consensus 328 rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D-~~~~vRi~tA~alS~lae~~~-Pygie~fd~vl~pLw 405 (975)
T COG5181 328 RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKD-RSRFVRIDTANALSYLAELVG-PYGIEQFDEVLCPLW 405 (975)
T ss_pred ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhc-cceeeeehhHhHHHHHHHhcC-CcchHHHHHHHHHHH
Confidence 7 8999999999999999999998889999999999999999 888899999999999987663 233445555555554
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcC-CccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH--------
Q 001749 209 NVSRQCLASGEEDVAVIAFEIFDELIES-PAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY-------- 279 (1018)
Q Consensus 209 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~-------- 279 (1018)
.- .+........+-+++.+-+.-. .|.+...........++.-..++ +++.+...+-+...|...
T Consensus 406 ~g----~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~sp--deemkk~~l~v~~~C~~v~~~tp~~l 479 (975)
T COG5181 406 EG----ASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSP--DEEMKKDLLVVERICDKVGTDTPWKL 479 (975)
T ss_pred HH----HHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCc--hhhcchhHHHHHHHHhccCCCCHHHH
Confidence 43 2222222222222333222221 12222223333333333333322 222222222222111110
Q ss_pred ---------hHHHhhh--------------------cCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHc
Q 001749 280 ---------KYNSLKK--------------------HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL 330 (1018)
Q Consensus 280 ---------~~~~~~~--------------------~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~ 330 (1018)
++.+.+. ..--+.+...++..+. |+..-.|+.+..+.+++.+.+
T Consensus 480 r~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~-------De~ep~r~m~a~~vsri~~~l 552 (975)
T COG5181 480 RDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYS-------DEPEPYRKMNAGLVSRIFSRL 552 (975)
T ss_pred HHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhcc-------CCcchhhhhhhHHHHHHHHhc
Confidence 0111100 0000111222222221 222345666777777777776
Q ss_pred c-----hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001749 331 A-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQF 405 (1018)
Q Consensus 331 ~-----~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 405 (1018)
| +.....++..+...++.++-.+. -.+-+++.+.....-..+++++.++..++..|+++.|.||..|+...+.+
T Consensus 553 g~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl 631 (975)
T COG5181 553 GRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSL 631 (975)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 6 22223334433333433322111 11233444333333344578999999999999999999999999999998
Q ss_pred HhhcCHHH-HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc-cccccchHHHHHHHHHhhcCCCHhHHHHHHHH
Q 001749 406 AEYLQPEI-VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCMSA 483 (1018)
Q Consensus 406 ~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~a 483 (1018)
+..+.... .+.+..+=..|.+.+....++|--....|+..+....+ ..++|-...++|.|..+|.+...+|....+..
T Consensus 632 ~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~l 711 (975)
T COG5181 632 AKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIAL 711 (975)
T ss_pred HHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHH
Confidence 86654211 13445555667788888889998888888888887774 56888899999999999999999999999999
Q ss_pred HHHHHHHhhccchh--hHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChh
Q 001749 484 IGSVAAAAEQAFIP--YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSE 561 (1018)
Q Consensus 484 l~~l~~~~~~~~~~--~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~ 561 (1018)
+|.++...++...+ ++.-...++..+- +-..+.|..|.+++|.+++++|+ ++++..+++.+...+..
T Consensus 712 vg~I~~~~peyi~~rEWMRIcfeLvd~Lk----s~nKeiRR~A~~tfG~Is~aiGP-------qdvL~~LlnnLkvqeRq 780 (975)
T COG5181 712 VGTICMNSPEYIGVREWMRICFELVDSLK----SWNKEIRRNATETFGCISRAIGP-------QDVLDILLNNLKVQERQ 780 (975)
T ss_pred HHHHHhcCcccCCHHHHHHHHHHHHHHHH----HhhHHHHHhhhhhhhhHHhhcCH-------HHHHHHHHhcchHHHHH
Confidence 99999888874432 3333333322211 22345788899999999999998 78889999988876667
Q ss_pred HHHHHHHHHHHHHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeeccc
Q 001749 562 LREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGV 641 (1018)
Q Consensus 562 ~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~ 641 (1018)
.|...--+++-+++.+|. -.++|.+++-- +|+.
T Consensus 781 ~RvctsvaI~iVae~cgp------fsVlP~lm~dY-----------------------------------------~TPe 813 (975)
T COG5181 781 QRVCTSVAISIVAEYCGP------FSVLPTLMSDY-----------------------------------------ETPE 813 (975)
T ss_pred hhhhhhhhhhhhHhhcCc------hhhHHHHHhcc-----------------------------------------cCch
Confidence 777777778888887764 25778777421 1344
Q ss_pred chhHHHHHHHHHHHHHHccccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHh
Q 001749 642 LDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDY 721 (1018)
Q Consensus 642 ~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~ 721 (1018)
.....+.+++++-+...+|+.-..|+.. +.|.+-+++. |+|+.-+..+.+.+..+.-.+
T Consensus 814 ~nVQnGvLkam~fmFeyig~~s~dYvy~--------------------itPlleDAlt-DrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 814 ANVQNGVLKAMCFMFEYIGQASLDYVYS--------------------ITPLLEDALT-DRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------------hhHHHHhhhc-ccchHHHHHHHHHHHHHhcCC
Confidence 4457788888888888877666666554 4444555554 566655555555444443322
Q ss_pred CCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCC-hHHHHH
Q 001749 722 GYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPH-FAPIFA 792 (1018)
Q Consensus 722 g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~ 792 (1018)
......+.+-.+++.++..+-+ ....++..+-+++..++..+|.+ +..|+.
T Consensus 873 ~gtg~eda~IHLlNllwpNIle--------------------~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~ 924 (975)
T COG5181 873 PGTGDEDAAIHLLNLLWPNILE--------------------PSPHVIQSFDEGMESFATVLGSGAMMKYVQ 924 (975)
T ss_pred CCcccHHHHHHHHHHhhhhccC--------------------CCcHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2111223333344444433322 22245667778888888888863 334443
No 23
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=1.9e-17 Score=172.29 Aligned_cols=725 Identities=16% Similarity=0.164 Sum_probs=416.2
Q ss_pred CCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHH
Q 001749 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHF 251 (1018)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ 251 (1018)
.....|..+++.|..-...... ...|..++|.++.. .+.|. .+......+..+...-...-.+++..++-.
T Consensus 180 G~~~mR~~~lRiLtdkav~fg~---~~vfnkvLp~lm~r---~LeDq---erhl~vk~idr~Ly~lddl~~pyvhkILvV 250 (975)
T COG5181 180 GGKRMRMEGLRILTDKAVNFGA---AAVFNKVLPMLMSR---ELEDQ---ERHLVVKLIDRLLYGLDDLKVPYVHKILVV 250 (975)
T ss_pred CCchhhHHHHHHHHHHhhcccH---HHHHHHHHHHHHhh---hhhhh---hhHhHHHHHHHHHHhcccccccceeeEEEE
Confidence 5677888888888765443321 34466677776664 34332 333344444444432222222232222111
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 001749 252 SLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (1018)
Q Consensus 252 l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~ 331 (1018)
.-..+- +.+...|...-+.+.+++...+-.+ ++ +.-..|-+..|..+|.....+...++..+|
T Consensus 251 v~plli--ded~~~r~~g~eii~nL~~~~Gl~~------------~v---s~mrpDi~~~deYVRnvt~ra~~vva~alg 313 (975)
T COG5181 251 VGPLLI--DEDLKRRCMGREIILNLVYRCGLGF------------SV---SSMRPDITSKDEYVRNVTGRAVGVVADALG 313 (975)
T ss_pred eecccc--CccHHHhcccHHHHHHHHHHhccce------------ee---eeccCCcccccHHHHHHHHHHHHHHHHhhC
Confidence 000111 2244445555566666664333110 01 111122233445788888999999999998
Q ss_pred hhchHHHHHHHHhhhcCC-ChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcC
Q 001749 332 KHVFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
. +.++|++.....|. +|+.|+.++.+..+|++-..-..-+|+..++..+-+++.|.+..||-.++.+++.+++..+
T Consensus 314 v---~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~ 390 (975)
T COG5181 314 V---EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVG 390 (975)
T ss_pred c---HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcC
Confidence 2 34455666666665 8999999999999999976666778999999999999999999999999999999999998
Q ss_pred HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc-cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001749 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1018)
Q Consensus 411 ~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~ 489 (1018)
|.-.+.++.++..|.+..+.....+-.+-..|.+.++--+. +-...|-...+..++..+++++.+.+...+........
T Consensus 391 Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~ 470 (975)
T COG5181 391 PYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDK 470 (975)
T ss_pred CcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhc
Confidence 87777888888888887765544444445555555554442 33345666899999999999887776666655444433
Q ss_pred HhhccchhhHHHHHHHHHHHHhcc-CchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHH
Q 001749 490 AAEQAFIPYAERVLELLKIFMVLT-NDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHG 568 (1018)
Q Consensus 490 ~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 568 (1018)
.-+..-..|.+++.|.+.+.+... ...+.+.......+-..++...|. +.+...+++.+.++..+.|.-...
T Consensus 471 v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~-------~~v~~kil~~~~De~ep~r~m~a~ 543 (975)
T COG5181 471 VGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD-------PRVSRKILEYYSDEPEPYRKMNAG 543 (975)
T ss_pred cCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC-------hHHHHHHHhhccCCcchhhhhhhH
Confidence 333344445577777666544321 111111111222333344444442 333444444444444444444444
Q ss_pred HHHHHHHHccc-Ccccch-hhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccce----------e
Q 001749 569 FFSNIAGVLED-GFAQYL-PLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNI----------S 636 (1018)
Q Consensus 569 ~l~~l~~~~~~-~~~~~l-~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 636 (1018)
+..++...+|. +|..-+ ..++..++.+++.++.. +.--.+.|+.+..- -+...+.+ .
T Consensus 544 ~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-------~~~il~~f~tv~vs----l~~r~kp~l~~ivStiL~~ 612 (975)
T COG5181 544 LVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-------VGLILPCFSTVLVS----LEFRGKPHLSMIVSTILKL 612 (975)
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-------ccEEEecccceeee----hhhccCcchHHHHHHHHHH
Confidence 44444444442 222211 12233333333322110 00001111111000 00000000 0
Q ss_pred eecccchhHHHHHHHHHHHHHHccccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Q 001749 637 VRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVE 716 (1018)
Q Consensus 637 i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~ 716 (1018)
+++..-+.|..|++..+.++..++..-. . +.+..+=..|.+.+. |..+++..+.+.++..
T Consensus 613 L~~k~p~vR~~aadl~~sl~~vlk~c~e----------------~---~~l~klg~iLyE~lg-e~ypEvLgsil~Ai~~ 672 (975)
T COG5181 613 LRSKPPDVRIRAADLMGSLAKVLKACGE----------------T---KELAKLGNILYENLG-EDYPEVLGSILKAICS 672 (975)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHhcch----------------H---HHHHHHhHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 1111223466666666666554432110 0 001111123444443 7889999999999999
Q ss_pred HHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCC-ChHHHHHHHH
Q 001749 717 IINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP-HFAPIFAKLF 795 (1018)
Q Consensus 717 ~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~ 795 (1018)
+...++-..+.|-+..|++.+..+|++++.. +.....++++.++....+ .-..-|-.|.
T Consensus 673 I~sv~~~~~mqpPi~~ilP~ltPILrnkh~K--------------------v~~nti~lvg~I~~~~peyi~~rEWMRIc 732 (975)
T COG5181 673 IYSVHRFRSMQPPISGILPSLTPILRNKHQK--------------------VVANTIALVGTICMNSPEYIGVREWMRIC 732 (975)
T ss_pred HhhhhcccccCCchhhccccccHhhhhhhHH--------------------HhhhHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 9888887777777888888888888886643 233444778888876554 1223444566
Q ss_pred HHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHHH
Q 001749 796 DPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYG 875 (1018)
Q Consensus 796 ~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~ 875 (1018)
-.++..|..-+. +.|..|..++|.+.+..|++ +++..++++|...+...|-....+++..++..++.
T Consensus 733 feLvd~Lks~nK-eiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf------ 799 (975)
T COG5181 733 FELVDSLKSWNK-EIRRNATETFGCISRAIGPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF------ 799 (975)
T ss_pred HHHHHHHHHhhH-HHHHhhhhhhhhHHhhcCHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch------
Confidence 667777766554 56999999999988887874 78899999999999899999999999999988751
Q ss_pred HHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCC-C-hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhh
Q 001749 876 DILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQI 953 (1018)
Q Consensus 876 ~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~-~-~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~ 953 (1018)
.+++.|..=..+ ++..+...+..+++-+..+-++.. + +-.+.|.+-+.|. ..|..-+..+...+.+|+- +.|..
T Consensus 800 sVlP~lm~dY~T--Pe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt-DrD~vhRqta~nvI~Hl~L-nc~gt 875 (975)
T COG5181 800 SVLPTLMSDYET--PEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT-DRDPVHRQTAMNVIRHLVL-NCPGT 875 (975)
T ss_pred hhHHHHHhcccC--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc-ccchHHHHHHHHHHHHHhc-CCCCc
Confidence 244444333332 345666777888888887754432 2 5677777666664 3455555666666666664 23221
Q ss_pred --hhhhhHHHHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHhH--hhHHHHHhcC
Q 001749 954 --LSLVPELVNLF-AEVVVSPEESSEVKSQVGMAFSHLISLYG--QQMQPLLSNL 1003 (1018)
Q Consensus 954 --~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~l 1003 (1018)
....-.+++++ .+++. ..+...+.+.+.+-.|.+..+ ..+.=+|++|
T Consensus 876 g~eda~IHLlNllwpNIle---~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGL 927 (975)
T COG5181 876 GDEDAAIHLLNLLWPNILE---PSPHVIQSFDEGMESFATVLGSGAMMKYVQQGL 927 (975)
T ss_pred ccHHHHHHHHHHhhhhccC---CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 12333344433 23332 234566666666766666543 2334444444
No 24
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.82 E-value=2e-12 Score=135.75 Aligned_cols=480 Identities=18% Similarity=0.239 Sum_probs=314.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHH
Q 001749 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSL 83 (1018)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~L 83 (1018)
-+.++.+....+++..++||++-|.+++..|+.|..--.++.++..|+.+..|..+|.+.|.+.|+-++.+.+..||.-.
T Consensus 15 llDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRnyv 94 (1053)
T COG5101 15 LLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYV 94 (1053)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhc-CCH-------HHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhh-----
Q 001749 84 IESITLE-HSA-------PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG----- 150 (1018)
Q Consensus 84 l~~l~~e-~~~-------~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~----- 150 (1018)
.+....- ++. .+.+.+-..+-.|++.+|| ..||+++|.+++..+ .+-+..+..+.+|..+.+..-
T Consensus 95 v~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFdfSae 172 (1053)
T COG5101 95 VQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFDFSAE 172 (1053)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHhccHH
Confidence 8877532 233 3445566666778899999 499999999999776 455667777777777665431
Q ss_pred -----------ccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCC
Q 001749 151 -----------QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGE 219 (1018)
Q Consensus 151 -----------~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 219 (1018)
.++...+++++.++.+.|..+.++..-.+.+..+..++.|.+-.. -+...+++.+...+. ..
T Consensus 173 qmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~y------IfeTnIieLv~~~f~-s~ 245 (1053)
T COG5101 173 QMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDY------IFETNIIELVLEHFN-SM 245 (1053)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhH------HHHHHHHHHHHHHhc-cC
Confidence 234456788899999998765778888899999999988886321 122234444333332 24
Q ss_pred HHHHHHHHHHHHHHhcCC--c-------cch---------------------------------hHhHHHHHHHHH----
Q 001749 220 EDVAVIAFEIFDELIESP--A-------PLL---------------------------------GDSVKSIVHFSL---- 253 (1018)
Q Consensus 220 ~~~~~~a~~~l~~l~~~~--~-------~~~---------------------------------~~~~~~li~~l~---- 253 (1018)
++.+..+++||.++++.. | ..+ +.++..+..++.
T Consensus 246 pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~ 325 (1053)
T COG5101 246 PDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYE 325 (1053)
T ss_pred CchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHH
Confidence 556666666776665421 0 000 000111111111
Q ss_pred ---HHhcCCC------------------CChHHHHHHHHHHHHHHHHhHHHhh---------------------------
Q 001749 254 ---EVSSSHN------------------LEPNTRHQAIQIISWLAKYKYNSLK--------------------------- 285 (1018)
Q Consensus 254 ---~~~~~~~------------------~~~~~r~~a~~~l~~~~~~~~~~~~--------------------------- 285 (1018)
..+.+++ .+.++-..++++|..++-.-...++
T Consensus 326 ~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~ 405 (1053)
T COG5101 326 VYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQD 405 (1053)
T ss_pred HHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchh
Confidence 1111111 1223445577777766532211111
Q ss_pred ------hcCCh---HHHHHHHhhhhccCCC-----CC----------CCCCCcHHHHHHHHHHHHHHHcchhchHHHHHH
Q 001749 286 ------KHKLV---IPILQVMCPLLAESNE-----AG----------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEF 341 (1018)
Q Consensus 286 ------~~~~~---~~i~~~l~~~l~~~~~-----d~----------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 341 (1018)
++.|. .++.-.++.-|..+++ +| +.|.-..++.-..+|-.++.-.-.+.-..+...
T Consensus 406 ~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~mi~K 485 (1053)
T COG5101 406 STKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGK 485 (1053)
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHH
Confidence 10011 1111222222333322 11 112224455566666666644333333344455
Q ss_pred HHhhhcCC--ChhHHHHHHHHHHHHhhcChHHHHH-hHHHHHHHH-----HhhcCCCChhHHHHHHHHHHHhHhhcCHHH
Q 001749 342 ASVSCQNA--SPKYREAAVTAIGIISEGCAEWMKE-KLESVLHIV-----LGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (1018)
Q Consensus 342 l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~-~l~~l~~~l-----~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 413 (1018)
+...+.+. +|+.-...++++|+++....+.... ++-.++..+ .+..+|....|-...++.+|++-..+.. .
T Consensus 486 larq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLka-h 564 (1053)
T COG5101 486 LARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKA-H 564 (1053)
T ss_pred HHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHH-H
Confidence 54445444 5778889999999999877655433 233333332 3344577777777778888888766532 3
Q ss_pred HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcc--------ccccchHHHHHHHHHhhcCCCHhHHHHHHHHHH
Q 001749 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE--------EILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (1018)
Q Consensus 414 ~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~--------~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~ 485 (1018)
..+++.++..|.+.+.+....|+..||..+-.+++.++- +-.||...++..+-+...+-.+.-.....+|.|
T Consensus 565 w~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg 644 (1053)
T COG5101 565 WSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACG 644 (1053)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHh
Confidence 567889999999999988889999999999999988753 335788888888777766666777777888888
Q ss_pred HHHHHhhc
Q 001749 486 SVAAAAEQ 493 (1018)
Q Consensus 486 ~l~~~~~~ 493 (1018)
.+++..+.
T Consensus 645 ~vIse~p~ 652 (1053)
T COG5101 645 MVISEVPK 652 (1053)
T ss_pred HHHhccch
Confidence 88877654
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2e-15 Score=173.69 Aligned_cols=644 Identities=14% Similarity=0.163 Sum_probs=373.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001749 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1018)
Q Consensus 158 ~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (1018)
..+...+...+.+ +++..|.+++--+-.+++++.....+ ....+.+...+.+.+.++|+=...-|.+.|+-+.+..
T Consensus 817 ~~~~~~l~~~~~s-~nph~R~A~~VWLLs~vq~l~~~~~v---~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg 892 (1702)
T KOG0915|consen 817 TIILKLLDTLLTS-PNPHERQAGCVWLLSLVQYLGQQPEV---VLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG 892 (1702)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCchh---hhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC
Confidence 3456777777778 99999999876666667666532111 2234445556666677666544444444443333322
Q ss_pred cc-chhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHH
Q 001749 238 AP-LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPD 316 (1018)
Q Consensus 238 ~~-~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~ 316 (1018)
.. .-+..+..+++.+.. . + |. +.++ . .....+.. ..|.... +...-+.+
T Consensus 893 d~~~k~~LV~sL~~tl~~--G-k------r~-~~~v----s-~eTelFq~------------G~Lg~Tp---~Gg~isTY 942 (1702)
T KOG0915|consen 893 DSSLKKSLVDSLVNTLTG--G-K------RK-AIKV----S-EETELFQE------------GTLGKTP---DGGKISTY 942 (1702)
T ss_pred CchhHHHHHHHHHHHHhc--c-c------cc-ccee----c-cchhcccC------------CcCCCCC---CCCcchHH
Confidence 11 112333334433322 0 0 00 0000 0 00000000 0011000 00011122
Q ss_pred HHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHH
Q 001749 317 RAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVR 395 (1018)
Q Consensus 317 ~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr 395 (1018)
.-|-.|++.+| .+++- .++.-.-.+..|..|.+|.+.|+.++....+.+.+++++++|-+.++--||++.||
T Consensus 943 ----KELc~LASdl~qPdLVY---KFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq 1015 (1702)
T KOG0915|consen 943 ----KELCNLASDLGQPDLVY---KFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ 1015 (1702)
T ss_pred ----HHHHHHHhhcCChHHHH---HHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH
Confidence 22445666666 33333 33332334578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc-cccccchHHHHHHHHHhhcCCCH
Q 001749 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPR 474 (1018)
Q Consensus 396 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~ 474 (1018)
.+....++.+...-...+..|+..++..|+..+.+..+|||+++|.|+..+++.-+ +.+...++.++..+++..++-+.
T Consensus 1016 ~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKE 1095 (1702)
T KOG0915|consen 1016 DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKE 1095 (1702)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887777789999999999999999999999999999999999874 34667788999999999888877
Q ss_pred hHHHH---HHHHHHHHHHHhhcc-----chhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHH
Q 001749 475 NLQET---CMSAIGSVAAAAEQA-----FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP 546 (1018)
Q Consensus 475 ~vr~~---al~al~~l~~~~~~~-----~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~ 546 (1018)
.||+. +..+++.++-.+.+. -...++.++|+|..-=.. +....+|..++.++..++...|+ .+.||.+.
T Consensus 1096 sVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim--s~v~evr~~si~tl~dl~Kssg~-~lkP~~~~ 1172 (1702)
T KOG0915|consen 1096 SVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM--SKVNEVRRFSIGTLMDLAKSSGK-ELKPHFPK 1172 (1702)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc--cchHHHHHHHHHHHHHHHHhchh-hhcchhhH
Confidence 88875 455566555444432 234566777776532111 12235788899999999988876 89999999
Q ss_pred HHHHHHhccCCCChhHHHHH-HH---------------------HHHHHHHHcccCcccchhhhhHHHHhhccCCCCCcc
Q 001749 547 FVEAAISGFGLEFSELREYT-HG---------------------FFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAV 604 (1018)
Q Consensus 547 l~~~l~~~l~~~~~~~~~~~-~~---------------------~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~ 604 (1018)
+++.+++....-.+.+..+. +. .|..+-.+...-=...+..++|.+.+..+.
T Consensus 1173 LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~------ 1246 (1702)
T KOG0915|consen 1173 LIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG------ 1246 (1702)
T ss_pred HHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc------
Confidence 99999887764333332221 11 111111111111111233444554444321
Q ss_pred CCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHccccCcchHHHHHHHhhcCC--ChhH
Q 001749 605 DIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNE--GPAK 682 (1018)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~ 682 (1018)
.+++.| |.++...+..++..++..+.||..+.+..+-.+. ..+.
T Consensus 1247 -----------------------------sVgl~T-----kvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNes 1292 (1702)
T KOG0915|consen 1247 -----------------------------SVGLGT-----KVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNES 1292 (1702)
T ss_pred -----------------------------cCCCCc-----chhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHH
Confidence 122233 8999999999999999999999999888773221 1122
Q ss_pred HHHHHHHHHH----------------HHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhh
Q 001749 683 AREILDTVMN----------------IFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREEST 746 (1018)
Q Consensus 683 ~~~~~~~~~~----------------~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~ 746 (1018)
.+..+...+. .++..+-.+.+.. ...++..+.+ |.......+..+...+++.+.-...+
T Consensus 1293 v~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~-~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~e--- 1367 (1702)
T KOG0915|consen 1293 VRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESL-KSISCATISN-IANYSQEMLKNYASAILPLIFLAMHE--- 1367 (1702)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCc-cchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhH---
Confidence 2222221111 1111111111110 1222332332 22222222333444444333211111
Q ss_pred hcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHH-HHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhc
Q 001749 747 CQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAP-IFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDM 825 (1018)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~ 825 (1018)
+ ++.. .+---+++..+.. .|....+ |...++..++.....+.++..|..+...+.......
T Consensus 1368 ---------e-----~Ka~---q~Lw~dvW~e~vs-ggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1368 ---------E-----EKAN---QELWNDVWAELVS-GGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred ---------H-----HHHH---HHHHHHHHHHhCC-CCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccc
Confidence 0 0001 1111133333321 1223334 666677777666666666777777776666666554
Q ss_pred Ccch-HhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHH
Q 001749 826 GSPI-AAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVAR 904 (1018)
Q Consensus 826 ~~~~-~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~ 904 (1018)
...+ .|++-.+.+.+..++...-.+-++....++......+...+....+.+.++..+-... .....+.-+..+.+.
T Consensus 1430 sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~sr--~~~~y~~~ala~~~~ 1507 (1702)
T KOG0915|consen 1430 SSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEVSR--REAKYKIMALAGAGL 1507 (1702)
T ss_pred cccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHHHH--HHhHHHHHHHhhhHH
Confidence 4433 3788899999999999887777777778888777776665555566666666554432 122333344555566
Q ss_pred HHHhCC
Q 001749 905 MIMVNP 910 (1018)
Q Consensus 905 l~~~~~ 910 (1018)
.+...+
T Consensus 1508 ~lda~~ 1513 (1702)
T KOG0915|consen 1508 ALDATK 1513 (1702)
T ss_pred HHhhhh
Confidence 665543
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=4.2e-15 Score=171.06 Aligned_cols=603 Identities=14% Similarity=0.183 Sum_probs=369.4
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhc--cccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhh
Q 001749 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1018)
Q Consensus 119 ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1018)
+...+...+.++++..|.+++--+-.++.+++. ....+.+++...|..+|+| .++-++..|.+.++-+++....+..
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd-~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSD-NDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcc-cHHHHHHHHhcCceEEEecCCchhH
Confidence 456677778899999999998888888888773 3445667888899999998 7777777777666555443321110
Q ss_pred HHHHHhhHHHHHHHHHH-----------------------------------------------------Hhh-cCCHHH
Q 001749 197 VVKFREFIPSILNVSRQ-----------------------------------------------------CLA-SGEEDV 222 (1018)
Q Consensus 197 ~~~~~~~~~~ll~~l~~-----------------------------------------------------~l~-~~~~~~ 222 (1018)
..++..+++.+.. ..+ +.-+.-
T Consensus 898 ----~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnS 973 (1702)
T KOG0915|consen 898 ----KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNS 973 (1702)
T ss_pred ----HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhc
Confidence 1111111111100 000 011222
Q ss_pred HHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhc
Q 001749 223 AVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLA 302 (1018)
Q Consensus 223 ~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 302 (1018)
+.+|.-.++.++......+.|+++.+++.+++.-- |.+..++..-...|..++..+...+
T Consensus 974 k~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~y--DP~~~Vq~aM~sIW~~Li~D~k~~v------------------ 1033 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQY--DPDKKVQDAMTSIWNALITDSKKVV------------------ 1033 (1702)
T ss_pred ccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhcc--CCcHHHHHHHHHHHHHhccChHHHH------------------
Confidence 34444455666665566677788888887776533 3456677666677777764332221
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh-HHHHHhHHHHHH
Q 001749 303 ESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLH 381 (1018)
Q Consensus 303 ~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~ 381 (1018)
+..+..++..+...+.+..|++|++++.|+..+..+.+ +.+.+.+++++.
T Consensus 1034 -----------------------------d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~ 1084 (1702)
T KOG0915|consen 1034 -----------------------------DEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWE 1084 (1702)
T ss_pred -----------------------------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 11233444444556788999999999999999999865 677788999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhHhhc---C-----HHHHHhhhhHHHHHHH-hccCCChHHHHHHHHHHHHHHhhhcc
Q 001749 382 IVLGALRDPEQFVRGAASFALGQFAEYL---Q-----PEIVSHYESVLPCILN-ALEDESDEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 382 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~---~-----~~~~~~~~~~l~~l~~-~l~~~~~~v~~~a~~al~~l~~~~~~ 452 (1018)
.+++.++|-+..||.+|-.+...++.-+ . ..-++.+..++|.|+. ++.+..+.||..+...+..++++.|+
T Consensus 1085 ~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1085 AAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 9999999999999998865544444333 1 1234567788888773 44455678999999999999999999
Q ss_pred ccccchHHHHHHHHHhhcCCCHhHH-----------HHHHHHHH-HHHHHhh-----ccchhhH-----HHHHHHHHHHH
Q 001749 453 EILPFLDPLMGKLLAALENSPRNLQ-----------ETCMSAIG-SVAAAAE-----QAFIPYA-----ERVLELLKIFM 510 (1018)
Q Consensus 453 ~~~~~~~~l~~~l~~~l~~~~~~vr-----------~~al~al~-~l~~~~~-----~~~~~~~-----~~i~~~l~~~l 510 (1018)
.+.||++.+++.|+..+..-.+.|- ..+++..- +.+...+ +.+.+|. .+++|.+.+.+
T Consensus 1165 ~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~ 1244 (1702)
T KOG0915|consen 1165 ELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELV 1244 (1702)
T ss_pred hhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999877654432 22222221 1111111 1233333 34556665555
Q ss_pred hccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHccc-Ccccchhhhh
Q 001749 511 VLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED-GFAQYLPLVV 589 (1018)
Q Consensus 511 ~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~i~ 589 (1018)
... -....|..+..++..++..+|. .+.||...++..++..+++.++.+|.+...+++.+++.-.+ .+..++..++
T Consensus 1245 R~s--Vgl~Tkvg~A~fI~~L~~r~~~-emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1245 RGS--VGLGTKVGCASFISLLVQRLGS-EMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred hcc--CCCCcchhHHHHHHHHHHHhcc-ccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 432 2234566777788888888876 78999999999999999988889999999999999997765 6777777777
Q ss_pred HHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHccccCcchHHH
Q 001749 590 PLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEE 669 (1018)
Q Consensus 590 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~ 669 (1018)
..++.-. + ..+..+|..+..++.+.+..+..|...
T Consensus 1322 ~~~l~k~------------e---------------------------------s~~siscatis~Ian~s~e~Lkn~asa 1356 (1702)
T KOG0915|consen 1322 ADLLGKD------------E---------------------------------SLKSISCATISNIANYSQEMLKNYASA 1356 (1702)
T ss_pred HHHhccC------------C---------------------------------CccchhHHHHHHHHHhhHHHHHhhHHH
Confidence 6655210 0 014556666666666666666666666
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcC
Q 001749 670 SLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQ 749 (1018)
Q Consensus 670 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~ 749 (1018)
++.++ ++.+ .+| + .-....+..+..-+...|...+.=+..+++..+......
T Consensus 1357 ILPLi-------------------FLa~-~ee-~-Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~n------ 1408 (1702)
T KOG0915|consen 1357 ILPLI-------------------FLAM-HEE-E-KANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITN------ 1408 (1702)
T ss_pred HHHHH-------------------HHHH-hHH-H-HHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhcc------
Confidence 55443 1111 111 0 111122222222222222222222445555444333222
Q ss_pred CCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCCh-HHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcc
Q 001749 750 PDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHF-APIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP 828 (1018)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 828 (1018)
++.+.+....+..+..++....... .|++..+.+.+...+... .+..+..-+..+...+..++..
T Consensus 1409 -------------n~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GR-iwdGKe~iLKAl~~~~~a~~~~ 1474 (1702)
T KOG0915|consen 1409 -------------NESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGR-IWDGKEEILKALASAFEAGLAD 1474 (1702)
T ss_pred -------------chHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHHHhHHH
Confidence 2344566666677776666554433 367777777776666643 3455666666666666665554
Q ss_pred hHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 001749 829 IAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKN 865 (1018)
Q Consensus 829 ~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~ 865 (1018)
...-++.+..+..+.+....+.-+.-+.-+.|.....
T Consensus 1475 v~~~~~si~~A~~~e~sr~~~~y~~~ala~~~~~lda 1511 (1702)
T KOG0915|consen 1475 VKRNMSSIEHAVMEEVSRREAKYKIMALAGAGLALDA 1511 (1702)
T ss_pred HHHhchHHHHHHHHHHHHHHhHHHHHHHhhhHHHHhh
Confidence 4444445555555544433333333344444444333
No 27
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.79 E-value=1.3e-14 Score=159.72 Aligned_cols=523 Identities=14% Similarity=0.157 Sum_probs=293.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcc-----CCHHHHHHHH
Q 001749 7 LLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK-----LSPQLKQLVK 80 (1018)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~-----l~~~~~~~i~ 80 (1018)
..+...+|+|+..++.||+.|++.+++++|...|..+..+. .+-.+|..|.+.|||.|.++|.. +.++....||
T Consensus 8 ~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR 87 (947)
T COG5657 8 KQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIR 87 (947)
T ss_pred HHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHH
Confidence 34566789999999999999999999999999999998764 68899999999999999999985 4455666999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcc------cc
Q 001749 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT------FR 154 (1018)
Q Consensus 81 ~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~------~~ 154 (1018)
..++..+.+ .++...-+.+.+++.||+.++| ..||.++|.+...+++.|..+.++.+.++..+.+...+. +.
T Consensus 88 ~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ 165 (947)
T COG5657 88 DELFSLIIS-SSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALFL 165 (947)
T ss_pred HHHHHHHHc-ccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 999999996 6677667999999999999999 599999999999999988888889999998888776532 22
Q ss_pred ccHHHHHHHHHHhcCCC-CCHHHHH-----------HHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHH
Q 001749 155 PHFADMQALLLKCLQDE-TSNRVRI-----------AALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDV 222 (1018)
Q Consensus 155 ~~~~~l~~~l~~~l~d~-~~~~vr~-----------~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 222 (1018)
...+.+.+++.+.+... +.+..+. .+++.+..+....-+. -..-+.+.++..+......++..++..
T Consensus 166 ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qd-i~eFfEd~l~~~m~~F~klls~~~~~l 244 (947)
T COG5657 166 EIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQD-IPEFFEDNLDKFMEHFCKLLSYSNPVL 244 (947)
T ss_pred HHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 22333433333333210 1111111 1333333333322111 123355666666666655555333322
Q ss_pred H-------------HHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHh-H---H
Q 001749 223 A-------------VIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSS---HNLEPNTRHQAIQIISWLAKYK-Y---N 282 (1018)
Q Consensus 223 ~-------------~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~---~~~~~~~r~~a~~~l~~~~~~~-~---~ 282 (1018)
. .+.+..+.-+....+..+.+.+-.+++..+...++ +..-+.+...++.++....++. + .
T Consensus 245 q~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk~~e 324 (947)
T COG5657 245 QKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRKTAE 324 (947)
T ss_pred hhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHHHHH
Confidence 2 23455555555556666665555566555544432 1122223333444444443311 1 1
Q ss_pred Hhhh--cCChHHHHHHHh-hhhccCCCCC----------------CCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHH
Q 001749 283 SLKK--HKLVIPILQVMC-PLLAESNEAG----------------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFAS 343 (1018)
Q Consensus 283 ~~~~--~~~~~~i~~~l~-~~l~~~~~d~----------------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 343 (1018)
...+ .+.+..+++.++ +.+.-.++|. .|-+..+|.++.+.+..+-..+++-+.+.+...+.
T Consensus 325 ~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~~i~~~~~~~~ie 404 (947)
T COG5657 325 VLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFGRIAVGHELTVIE 404 (947)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 1111 123334444333 2222112211 11223456677777777777777555566666666
Q ss_pred hhhcCCC---hhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCC----ChhHH-HHHHHHHHHhHhhcCHHH--
Q 001749 344 VSCQNAS---PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP----EQFVR-GAASFALGQFAEYLQPEI-- 413 (1018)
Q Consensus 344 ~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~----~~~Vr-~~a~~~l~~l~~~~~~~~-- 413 (1018)
+....++ ...+..++.++..++...-..+-+..+-+-..+.+.+-++ +.+++ ..+.+++..-......+.
T Consensus 405 ~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~~~~~~~ 484 (947)
T COG5657 405 SEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQLDSSELSE 484 (947)
T ss_pred HHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheechhhhhhhhhhh
Confidence 6655552 1222233333322222212222222222223333333332 33432 222222222111111110
Q ss_pred HHhh-hhHHHHHHHhccCCC--hHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC-CHhHHHHHHHHHHHHHH
Q 001749 414 VSHY-ESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAA 489 (1018)
Q Consensus 414 ~~~~-~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~al~~l~~ 489 (1018)
.+.+ .+..-.......|.. .+++.+...++....-+ ++....-.++++-.+.+.+.+. +...|+..++++++++.
T Consensus 485 ~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~-~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~ 563 (947)
T COG5657 485 SKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFS-VCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIII 563 (947)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc-cccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Confidence 1111 111111111111111 23444444444433222 2233445566666666666665 56789999999999999
Q ss_pred HhhccchhhHHHHHHHHHHHHhcc-Cch-hhhhHHHHHHHHHHHHH
Q 001749 490 AAEQAFIPYAERVLELLKIFMVLT-NDE-DLRSRARATELLGLVAE 533 (1018)
Q Consensus 490 ~~~~~~~~~~~~i~~~l~~~l~~~-~~~-~~~~r~~a~~~l~~l~~ 533 (1018)
..++...|...++++.+.++.... .++ ....-...++.++.++.
T Consensus 564 ~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 564 IDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred hCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 999999998899999999887632 222 22223345566665554
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.9e-15 Score=158.72 Aligned_cols=477 Identities=15% Similarity=0.148 Sum_probs=300.1
Q ss_pred cCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCC-hHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhc
Q 001749 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQ-EEHREVALILFSSLTETIGQTFRPHFADMQALLLKCL 168 (1018)
Q Consensus 90 e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~-~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 168 (1018)
++...+|.........+...... ..-..++|-..+.+++.. ...|++-....+.+..+ .....+....++..+...+
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~~~-~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~-~~~~d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQHGD-QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFH-LQIVDPRPISIIEILLEEL 105 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhhhH-HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHh-ccccCcchhHHHHHHHHhc
Confidence 45667777766665544432111 233556777777776543 34555555555554433 3334556677788888888
Q ss_pred CCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-ccchhHhHHH
Q 001749 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP-APLLGDSVKS 247 (1018)
Q Consensus 169 ~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~ 247 (1018)
.. ++..+|.+...|+..+....... ... .+.+.+.+ .++...-..+..+...+..+.... ...+++ ..
T Consensus 106 ~t-ps~~~q~~~~~~l~~~~~~~~~~-~~~---~~l~~l~~----ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--~~ 174 (569)
T KOG1242|consen 106 DT-PSKSVQRAVSTCLPPLVVLSKGL-SGE---YVLELLLE----LLTSTKIAERAGAAYGLAGLVNGLGIESLKE--FG 174 (569)
T ss_pred CC-CcHHHHHHHHHHhhhHHHHhhcc-CHH---HHHHHHHH----HhccccHHHHhhhhHHHHHHHcCcHHhhhhh--hh
Confidence 77 99999999999998876544321 111 22333333 343334444444444444444321 111111 11
Q ss_pred HHHHHHHHhcCCCCChHHHHHH-HHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHH
Q 001749 248 IVHFSLEVSSSHNLEPNTRHQA-IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326 (1018)
Q Consensus 248 li~~l~~~~~~~~~~~~~r~~a-~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l 326 (1018)
++..+.....++. ....|..+ +.+... ...-+. -..+|+.++++.++.-..+.. ..+|.++..+...+
T Consensus 175 ~l~~l~~ai~dk~-~~~~re~~~~a~~~~-~~~Lg~--~~EPyiv~~lp~il~~~~d~~-------~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 175 FLDNLSKAIIDKK-SALNREAALLAFEAA-QGNLGP--PFEPYIVPILPSILTNFGDKI-------NKVREAAVEAAKAI 243 (569)
T ss_pred HHHHHHHHhcccc-hhhcHHHHHHHHHHH-HHhcCC--CCCchHHhhHHHHHHHhhccc-------hhhhHHHHHHHHHH
Confidence 2222333333331 22223222 222211 111111 112466777777766554433 47899999999999
Q ss_pred HHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001749 327 ALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFA 406 (1018)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 406 (1018)
...++.+-+..+++.+...+....|+.+.+++..+|.+++..++.+...+++++|.+...|.|.++.||.++..++-+++
T Consensus 244 ~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 244 MRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred HHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 98888555555555544445555999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCH-HHHH-----------------------------------hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 407 EYLQP-EIVS-----------------------------------HYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 407 ~~~~~-~~~~-----------------------------------~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
+.... ++.+ .+.-++|.|-+.+.+.+...+..++..+++++.-.
T Consensus 324 svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 324 SVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred HhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 76632 1111 12223444444444444445677888899999888
Q ss_pred --ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHH
Q 001749 451 --GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELL 528 (1018)
Q Consensus 451 --~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l 528 (1018)
+..+.||++.+++.+-..+.+..+++|..+..++|.+.+..+..- ++...|.+......... ..-|..+...+
T Consensus 404 eDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~---f~d~~p~l~e~~~~~k~--~~~~~g~aq~l 478 (569)
T KOG1242|consen 404 EDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS---FDDLIPELSETLTSEKS--LVDRSGAAQDL 478 (569)
T ss_pred cCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc---ccccccHHHHhhccchh--hhhhHHHhhhH
Confidence 556889999999999999999999999999999999999988642 25556666554432211 11232333444
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHhccC--CCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHHhhccCC
Q 001749 529 GLVAESVGRARMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLD 599 (1018)
Q Consensus 529 ~~l~~~~g~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~ 599 (1018)
+.+....|-+. ...++..++.... ..++.+++.....+..+-..+|..|.+|+..+++.+++.+...
T Consensus 479 ~evl~~~~v~~----~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~ 547 (569)
T KOG1242|consen 479 SEVLAGLGVEK----VEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADN 547 (569)
T ss_pred HHHHhcccchH----HHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhc
Confidence 44444444433 3334433333222 3355688888888888899999999999999999999987643
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=8.3e-15 Score=156.21 Aligned_cols=516 Identities=17% Similarity=0.157 Sum_probs=332.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHhcCCccchhHhHHH
Q 001749 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIFDELIESPAPLLGDSVKS 247 (1018)
Q Consensus 169 ~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 247 (1018)
.| +.+.||...+++....+....+ ....++.| ...+.++.. +...+... -.+...+..+....++....
T Consensus 27 ~d-~~~~v~~~ml~a~~~~~~~~~~----~~v~~l~~----~~~~~l~~~~~~~~~~~~-~v~~~~~a~~~~~~d~~~~~ 96 (569)
T KOG1242|consen 27 ED-RRIDVRGNMLEAGEAAINQHGD----QNVLNLKP----CFEQRLNSLHNDNLRNNV-VVLEGTLAFHLQIVDPRPIS 96 (569)
T ss_pred CC-cchhhHHhHHHHHHHHHHhhhH----HHHHHHHH----HHHHHhccchhHHHhhhh-HHHHHHHHHhccccCcchhH
Confidence 56 7888999888888777765532 12222333 333334322 22233333 33333333333334455555
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHH
Q 001749 248 IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (1018)
Q Consensus 248 li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~ 327 (1018)
++..+++....+ ++.+|.....++..+.-... ..-...+.+.+...+.... ...+..+...+..+.
T Consensus 97 ~~~~~~~~~~tp--s~~~q~~~~~~l~~~~~~~~-----~~~~~~~l~~l~~ll~~~~-------~~~~~~aa~~~ag~v 162 (569)
T KOG1242|consen 97 IIEILLEELDTP--SKSVQRAVSTCLPPLVVLSK-----GLSGEYVLELLLELLTSTK-------IAERAGAAYGLAGLV 162 (569)
T ss_pred HHHHHHHhcCCC--cHHHHHHHHHHhhhHHHHhh-----ccCHHHHHHHHHHHhcccc-------HHHHhhhhHHHHHHH
Confidence 666666665544 67778776666655443211 1123345555666665321 234555666677777
Q ss_pred HHcchhch--HHHHHHHHhhhcCCC-hhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001749 328 LNLAKHVF--PPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (1018)
Q Consensus 328 ~~~~~~~~--~~~~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 404 (1018)
+..+-..+ ..++.-+...+++.+ ...|+++..++............+++..++|.++..+.|..+.||.+|..+...
T Consensus 163 ~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ka 242 (569)
T KOG1242|consen 163 NGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKA 242 (569)
T ss_pred cCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHH
Confidence 66662222 235555666666654 556668888888888887788889999999999999999999999999999999
Q ss_pred hHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHH
Q 001749 405 FAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAI 484 (1018)
Q Consensus 405 l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al 484 (1018)
+...+.+. ..+.++|.++..+.+..++-+.++...++.+....++.+.-+++.+++.+.+.+.++++++|+.+..++
T Consensus 243 i~~~~~~~---aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 243 IMRCLSAY---AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred HHHhcCcc---hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence 98887643 345677777777776688889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHh-hhhhhcCCChHHHHHHHHhccCCCChhHH
Q 001749 485 GSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAES-VGRARMEPILPPFVEAAISGFGLEFSELR 563 (1018)
Q Consensus 485 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~-~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 563 (1018)
-.+....... -+..++|.|...+...+.. ..+|+-.++.+ +-...-.|-+.-+++.+...++..+...+
T Consensus 320 ~~~~svidN~---dI~~~ip~Lld~l~dp~~~-------~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 320 LKFGSVIDNP---DIQKIIPTLLDALADPSCY-------TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHHHhhccH---HHHHHHHHHHHHhcCcccc-------hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhh
Confidence 9888877642 2444555666666544211 22333333321 11112235566677777777777777888
Q ss_pred HHHHHHHHHHHHHc--ccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeeccc
Q 001749 564 EYTHGFFSNIAGVL--EDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGV 641 (1018)
Q Consensus 564 ~~~~~~l~~l~~~~--~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~ 641 (1018)
+.+...+++|+.-. +....||++.++|.+-..+. +..
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~-----------------------------------------d~~ 428 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD-----------------------------------------DAV 428 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc-----------------------------------------CCC
Confidence 88999999999988 66799999999999876653 223
Q ss_pred chhHHHHHHHHHHHHHHccccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHh
Q 001749 642 LDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDY 721 (1018)
Q Consensus 642 ~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~ 721 (1018)
-+.|..+.++|+.+...+|+..++.. .|.+.+....+...--+......+.+++...
T Consensus 429 PEvR~vaarAL~~l~e~~g~~~f~d~-----------------------~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~ 485 (569)
T KOG1242|consen 429 PEVRAVAARALGALLERLGEVSFDDL-----------------------IPELSETLTSEKSLVDRSGAAQDLSEVLAGL 485 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccc-----------------------ccHHHHhhccchhhhhhHHHhhhHHHHHhcc
Confidence 35699999999999888876544322 2222222222222222334556666776666
Q ss_pred CCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 001749 722 GYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKF 801 (1018)
Q Consensus 722 g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 801 (1018)
|.......++.+.... ... ..++.+.+....++..+....|..|.+|+..+++.+.+.
T Consensus 486 ~v~~~~~~~~~~~a~~----~~~------------------~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~ 543 (569)
T KOG1242|consen 486 GVEKVEDILPEILANA----SSV------------------LIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKG 543 (569)
T ss_pred cchHHHHHHHHHHHHH----hhc------------------cchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHH
Confidence 6543333444333221 110 011123333344555555566778999999999999999
Q ss_pred hccCCC
Q 001749 802 AKSSRP 807 (1018)
Q Consensus 802 l~~~~~ 807 (1018)
+.+...
T Consensus 544 ~ad~de 549 (569)
T KOG1242|consen 544 LADNDE 549 (569)
T ss_pred hhhcCC
Confidence 886543
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.7e-14 Score=145.45 Aligned_cols=520 Identities=13% Similarity=0.147 Sum_probs=326.9
Q ss_pred HhhhcCCChhHHHHHHHHHHHHhhcCh-HHHHHhHHHHHHHH-HhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhH
Q 001749 343 SVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIV-LGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420 (1018)
Q Consensus 343 ~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l-~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ 420 (1018)
.+.+.+.-+..|++|..-+-.+..++- +.-...+++++..+ -.....++..-|..++..+...+..++.+...|.+.+
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 345677778899999999888887543 12224466777743 4455566766777888888888888887777799999
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh-ccc-hhh
Q 001749 421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE-QAF-IPY 498 (1018)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~-~~~-~~~ 498 (1018)
+|.++.++.|.+.+||..||..+.++++..+..+.+|++.+...+.++..+++.+||..+= .+.++..... +.- .-.
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIVTESASTFS 164 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhccccccccC
Confidence 9999999999999999999999999999999999999999999999999999888887653 4444444332 222 335
Q ss_pred HHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcc
Q 001749 499 AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE 578 (1018)
Q Consensus 499 ~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 578 (1018)
++.++|.+..-+...+ ...|...++.+..+-..- .-.+-.|++.+++.+++.+.+++.++|...-.+++.+-....
T Consensus 165 L~~~ipLL~eriy~~n---~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVIN---PMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 6889999988876553 234556667776665333 235778999999999999999999999877666665544332
Q ss_pred cCccc-chhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHH
Q 001749 579 DGFAQ-YLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFAL 657 (1018)
Q Consensus 579 ~~~~~-~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~ 657 (1018)
.+-.. -.+.+++.+.. ...++.-+.+..|+.-+-+++.
T Consensus 241 s~P~s~d~~~~i~vlv~-----------------------------------------~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVP-----------------------------------------HLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred cCccccCcccchhhccc-----------------------------------------cccCCcHHHHHHHHHHHHHHhc
Confidence 11000 00000000000 0122333457778888999998
Q ss_pred HccccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHH--HHHHHH
Q 001749 658 HTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPY--MSRLVD 735 (1018)
Q Consensus 658 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~--~~~i~~ 735 (1018)
.-|..+.||+..++..+ +.++.+.++.....-+...-+.+++.++.....+. +..+++
T Consensus 280 i~g~~~l~~~s~il~~i--------------------Lpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~ 339 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAI--------------------LPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIE 339 (675)
T ss_pred CCCcchhhhhhhhhhhc--------------------ccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHH
Confidence 88999999988866543 22222111111110011111112222222211111 224444
Q ss_pred HHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccchhhhh
Q 001749 736 ATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVV 815 (1018)
Q Consensus 736 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~ 815 (1018)
.+.+.+... ...-.-++.+++..+...++.+...+...+.+.+++.|.++.+ .+...++
T Consensus 340 vl~~~l~~~--------------------~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd-~vvl~~L 398 (675)
T KOG0212|consen 340 VLTKYLSDD--------------------REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD-EVVLLAL 398 (675)
T ss_pred HHHHHhhcc--------------------hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh-HHHHHHH
Confidence 444444331 1112345668888888888889999999999999999998765 5577889
Q ss_pred HhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCCCCCchhH
Q 001749 816 ATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVR 895 (1018)
Q Consensus 816 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~ 895 (1018)
..++.++..... +++-+++..++..+..+.--++..+..-+.++|..... ..+...+..++.. +++-...
T Consensus 399 ~lla~i~~s~~~---~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a------E~IYr~~a~ILe~-e~nl~FA 468 (675)
T KOG0212|consen 399 SLLASICSSSNS---PNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA------ERIYRSIADILER-EENLKFA 468 (675)
T ss_pred HHHHHHhcCccc---ccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH------HHHHHHHHHHHhc-cccchHH
Confidence 999998876433 23444555555555555555666677777777765532 3344555555553 4555555
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhh---------hhhhhHHHHHHHH
Q 001749 896 DNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQI---------LSLVPELVNLFAE 966 (1018)
Q Consensus 896 ~na~~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~---------~~~~~~il~~~~~ 966 (1018)
...+.++..++...|+...+ - .-++.+ ..+|....|.+|..-+.+++-.+ ++|...+++.+++
T Consensus 469 stMV~~Ln~iLlTStELf~L---R-~~Lk~l----sn~es~~lF~cLy~sWchnPva~~SLClLtQnYqhA~~liq~fa~ 540 (675)
T KOG0212|consen 469 STMVQALNTILLTSTELFQL---R-NKLKDL----SNEESQNLFCCLYRSWCHNPVATLSLCLLTQNYQHAYDLIQLFAD 540 (675)
T ss_pred HHHHHHHHhhhcccHHHHHH---H-HHHHhc----cChhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667777777665543211 1 112222 23455666777766665443332 1355555555544
Q ss_pred H
Q 001749 967 V 967 (1018)
Q Consensus 967 ~ 967 (1018)
.
T Consensus 541 ~ 541 (675)
T KOG0212|consen 541 V 541 (675)
T ss_pred h
Confidence 3
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.64 E-value=1.3e-12 Score=152.57 Aligned_cols=508 Identities=16% Similarity=0.180 Sum_probs=336.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcC---CC-cHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHH
Q 001749 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKD---PQ-VVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQL 78 (1018)
Q Consensus 3 ~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~---p~-~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~ 78 (1018)
+++.+++.... .+...++++-..+-.+... .. .....+..+. +++...|+++-.++...... +++..-.
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~-----~~~~~~l 79 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHE-----DPELLIL 79 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTT-----SHHHHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhc-----chhHHHH
Confidence 34444444444 4777888888777654422 22 3444555444 77899999999998877543 4555666
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHH
Q 001749 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (1018)
Q Consensus 79 i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 158 (1018)
+.+.+.+.|.+ +++.+|..+-++++.+...+ ..+.+++.+.+++.++++.+|..|+.++..+....++.+...
T Consensus 80 ~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-- 152 (526)
T PF01602_consen 80 IINSLQKDLNS-PNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-- 152 (526)
T ss_dssp HHHHHHHHHCS-SSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--
T ss_pred HHHHHHHhhcC-CCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--
Confidence 77777788774 89999999999999888543 568899999999999999999999999999998877654332
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc
Q 001749 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (1018)
Q Consensus 159 ~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 238 (1018)
+.+.+.+.+.| +++.|+.+|+.++..+ ... ...+..+++.+...+.+.+...++-....+++++..+....+
T Consensus 153 -~~~~l~~lL~d-~~~~V~~~a~~~l~~i-~~~-----~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 153 -LIPKLKQLLSD-KDPSVVSAALSLLSEI-KCN-----DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp -HHHHHHHHTTH-SSHHHHHHHHHHHHHH-HCT-----HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred -HHHHHhhhccC-CcchhHHHHHHHHHHH-ccC-----cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence 67788888888 8899999999999888 221 111225777777777777777888888888888887776554
Q ss_pred cchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHH
Q 001749 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRA 318 (1018)
Q Consensus 239 ~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~ 318 (1018)
..... ..+++.+...+.+ .++.+...++.++..+....+ ....+++.+..++...+ .+.+..
T Consensus 225 ~~~~~--~~~i~~l~~~l~s--~~~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~-------~nvr~~ 286 (526)
T PF01602_consen 225 EDADK--NRIIEPLLNLLQS--SSPSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSD-------PNVRYI 286 (526)
T ss_dssp HHHHH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSS-------HHHHHH
T ss_pred hhhhH--HHHHHHHHHHhhc--cccHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhccc-------chhehh
Confidence 44411 2333333333332 255667777666654432211 34566777777776432 357888
Q ss_pred HHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCC-ChhHHHH
Q 001749 319 AAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP-EQFVRGA 397 (1018)
Q Consensus 319 a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~-~~~Vr~~ 397 (1018)
+..++..++...+..+..... .+.....+++...|..++..+..++.. .....+++.+.+.+.+. ++.+|..
T Consensus 287 ~L~~L~~l~~~~~~~v~~~~~-~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~ 359 (526)
T PF01602_consen 287 ALDSLSQLAQSNPPAVFNQSL-ILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRRE 359 (526)
T ss_dssp HHHHHHHHCCHCHHHHGTHHH-HHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHH
T ss_pred HHHHHHHhhcccchhhhhhhh-hhheecCCCChhHHHHHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhh
Confidence 888888888776433332111 122223488889999999999888864 45566777777777444 7789999
Q ss_pred HHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcC-CCHhH
Q 001749 398 ASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNL 476 (1018)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~v 476 (1018)
++..++.++....+ ..+..++.+++.+......+...+...+..++...++. -..++..+...+.+ .++.+
T Consensus 360 ~i~~I~~la~~~~~----~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~ 431 (526)
T PF01602_consen 360 LIKAIGDLAEKFPP----DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDISSPEA 431 (526)
T ss_dssp HHHHHHHHHHHHGS----SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHH
T ss_pred HHHHHHHHHhccCc----hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHH
Confidence 99999999988754 34456666666677666677777888888887765432 34467777777765 46788
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccC
Q 001749 477 QETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG 556 (1018)
Q Consensus 477 r~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~ 556 (1018)
+..+++.+|..+...++ .. ....++..+.+.+.. +...+|...+.++..+....+.+ ...+.+.+.+.+..+
T Consensus 432 ~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~---~~~~vk~~ilt~~~Kl~~~~~~~---~~~~~i~~~~~~~~~ 503 (526)
T PF01602_consen 432 LAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIE---ESPEVKLQILTALAKLFKRNPEN---EVQNEILQFLLSLAT 503 (526)
T ss_dssp HHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHSCST---THHHHHHHHHHCHHH
T ss_pred HHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhcc---ccHHHHHHHHHHHHHHHhhCCch---hhHHHHHHHHHHHhc
Confidence 99999999988777765 11 333444444443322 23346666666666665433211 122466666665555
Q ss_pred --CCChhHHHHHHHHHHHH
Q 001749 557 --LEFSELREYTHGFFSNI 573 (1018)
Q Consensus 557 --~~~~~~~~~~~~~l~~l 573 (1018)
+.+.++|+.+..++.-+
T Consensus 504 ~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 504 EDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HS-SSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 56899999988776544
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=99.64 E-value=2.5e-11 Score=139.68 Aligned_cols=406 Identities=12% Similarity=0.102 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccc
Q 001749 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153 (1018)
Q Consensus 74 ~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~ 153 (1018)
+..+.+...+-+++. ++++.||+.++-++..+.+.....-.-..+++.+.+++.++++.+...|+.+|..+.+..++.+
T Consensus 136 ~i~e~l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 136 SVLEYTLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 334444445555554 5677777777777777765431100112345666666677777777777777777766544332
Q ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 001749 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDEL 233 (1018)
Q Consensus 154 ~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l 233 (1018)
. .....+..+...+.+ -++--+...++++.. +.+.. .... -.+++.+...++..++.+..+|++++..+
T Consensus 215 ~-l~~~~~~~Ll~~L~e-~~EW~Qi~IL~lL~~---y~P~~--~~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 215 E-SSNEWVNRLVYHLPE-CNEWGQLYILELLAA---QRPSD--KESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred H-HHHHHHHHHHHHhhc-CChHHHHHHHHHHHh---cCCCC--cHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 1 122222333344443 334445555555533 22211 1111 23444444556677888999999988888
Q ss_pred hcCC-ccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCC
Q 001749 234 IESP-APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (1018)
Q Consensus 234 ~~~~-~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~ 312 (1018)
.... +......+..+...++.+. + .++++|..++.-+..++...|..+.. . +...+.... |.
T Consensus 284 ~~~~~~~~~~~~~~rl~~pLv~L~-s--s~~eiqyvaLr~I~~i~~~~P~lf~~--~----~~~Ff~~~~--------Dp 346 (746)
T PTZ00429 284 ASRCSQELIERCTVRVNTALLTLS-R--RDAETQYIVCKNIHALLVIFPNLLRT--N----LDSFYVRYS--------DP 346 (746)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhh-C--CCccHHHHHHHHHHHHHHHCHHHHHH--H----HHhhhcccC--------Cc
Confidence 7543 2333333333434344442 2 35689999998888888777765433 1 111111111 11
Q ss_pred CcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCCh
Q 001749 313 LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQ 392 (1018)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~ 392 (1018)
..++....+.|-.++ .+.-+..++..+.++..+.+...+..++.++|.++...+.. .+.++..++..+.+...
T Consensus 347 ~yIK~~KLeIL~~La---ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~----a~~cV~~Ll~ll~~~~~ 419 (746)
T PTZ00429 347 PFVKLEKLRLLLKLV---TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV----APDCANLLLQIVDRRPE 419 (746)
T ss_pred HHHHHHHHHHHHHHc---CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCch
Confidence 224444445544444 44455667777888888889999999999999999876543 44566666666665544
Q ss_pred hHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhcc---CCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhh
Q 001749 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE---DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (1018)
Q Consensus 393 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 469 (1018)
.+. .++..+..+....+.. .+++.++..+. -.++..+...+|.++.+++..++ .+.++..++.-+
T Consensus 420 ~v~-e~i~vik~IlrkyP~~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f 487 (746)
T PTZ00429 420 LLP-QVVTAAKDIVRKYPEL------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTI 487 (746)
T ss_pred hHH-HHHHHHHHHHHHCccH------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhh
Confidence 443 5667777776554321 14555554331 12467888899999999876543 456777777777
Q ss_pred cCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 001749 470 ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (1018)
Q Consensus 470 ~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 532 (1018)
...+..||.+++.+...+....++...+.+. ..+....... .+..+|.+|......+.
T Consensus 488 ~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~---~vL~~~t~~~--~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 488 MEHEQRVQLAILSAAVKMFLRDPQGMEPQLN---RVLETVTTHS--DDPDVRDRAFAYWRLLS 545 (746)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCcHHHHHHHH---HHHHHHHhcC--CChhHHHHHHHHHHHHc
Confidence 7778899999999999887776543332222 2222222222 34456666665555543
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=6.9e-13 Score=138.05 Aligned_cols=394 Identities=15% Similarity=0.168 Sum_probs=278.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc-CCccch
Q 001749 163 LLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE-SPAPLL 241 (1018)
Q Consensus 163 ~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~-~~~~~~ 241 (1018)
.+.++++| ...+-|++|..-+-+++...-...+....+.++..+.. +....++...+++++-.+...+- ...+-
T Consensus 4 ~i~r~ltd-KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~---d~a~s~~~n~rkGgLiGlAA~~iaLg~~~- 78 (675)
T KOG0212|consen 4 SIARGLTD-KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAG---DYAYSPHANMRKGGLIGLAAVAIALGIKD- 78 (675)
T ss_pred Hhhhhhhh-HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH---HhccCcccccccchHHHHHHHHHHhcccc-
Confidence 45677888 77888998887777776543222223333444443333 33434443344444443333321 11111
Q ss_pred hHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHH
Q 001749 242 GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAE 321 (1018)
Q Consensus 242 ~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~ 321 (1018)
.+++..+++..+.++++ .+..+|..|++.+..+++.....+. .+.+.++..+..+..+.+. ..+.+.+
T Consensus 79 ~~Y~~~iv~Pv~~cf~D--~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd~--------~V~~~ae 146 (675)
T KOG0212|consen 79 AGYLEKIVPPVLNCFSD--QDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSDQ--------NVRGGAE 146 (675)
T ss_pred HHHHHHhhHHHHHhccC--ccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCcc--------ccccHHH
Confidence 12455555554555553 4778999999999999875443222 2667777777777766542 2234567
Q ss_pred HHHHHHHHcc-----hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHH
Q 001749 322 VIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRG 396 (1018)
Q Consensus 322 ~l~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~ 396 (1018)
.++++..... .--++.++|.+.+.+...++..|...+.++..+-....-.+..|++.+++.++..|.|+++.||.
T Consensus 147 LLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~ 226 (675)
T KOG0212|consen 147 LLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRT 226 (675)
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHH
Confidence 8888876554 22358899999999999999999999999999888777788899999999999999999999999
Q ss_pred HHHHHHHHhHhhcCHHHHH-hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCH-
Q 001749 397 AASFALGQFAEYLQPEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR- 474 (1018)
Q Consensus 397 ~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~- 474 (1018)
.+-.+++.+...+...-.. .++..++.++..++++++.+|..|..-+..|+.-.|..+.+|+..++..++.++.++..
T Consensus 227 ~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~ 306 (675)
T KOG0212|consen 227 LTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM 306 (675)
T ss_pred HHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc
Confidence 9988898887665322122 46788999999999999999999999999999999999999999999999999988765
Q ss_pred hHHHHHHHHHHHHHHHhhccch---hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHH
Q 001749 475 NLQETCMSAIGSVAAAAEQAFI---PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAA 551 (1018)
Q Consensus 475 ~vr~~al~al~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l 551 (1018)
++++.+...-+.+...++.... --+..++..+.+.+... ....|-.+++.+..+-+..+. .+.-+..++...+
T Consensus 307 ~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~---~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tL 382 (675)
T KOG0212|consen 307 SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD---REETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTL 382 (675)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHH
Confidence 4666665555444444433221 13356788888777643 234577888888888877654 4556788899999
Q ss_pred HhccCCCChhHHHHHHHHHHHHHHHc
Q 001749 552 ISGFGLEFSELREYTHGFFSNIAGVL 577 (1018)
Q Consensus 552 ~~~l~~~~~~~~~~~~~~l~~l~~~~ 577 (1018)
+..+.+.++++...++..++.+|..-
T Consensus 383 L~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 383 LKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 99999888888888888887777643
No 34
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.5e-09 Score=119.96 Aligned_cols=445 Identities=15% Similarity=0.160 Sum_probs=267.8
Q ss_pred CHHHHHHHHHHHHHhhcccCChhh----HH-----HHHhhHHHHHHHHHHHhhc------CCHHHHHHHHHHHHHHhcCC
Q 001749 173 SNRVRIAALKAIGSFLEFTNDGAE----VV-----KFREFIPSILNVSRQCLAS------GEEDVAVIAFEIFDELIESP 237 (1018)
Q Consensus 173 ~~~vr~~a~~~l~~~~~~~~~~~~----~~-----~~~~~~~~ll~~l~~~l~~------~~~~~~~~a~~~l~~l~~~~ 237 (1018)
-+++++-|+..+.++.+...++.. .. -..++.+.+++.+.+.+.. -.+++..-++..+.+.+.+.
T Consensus 256 wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~ 335 (1010)
T KOG1991|consen 256 WWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHA 335 (1010)
T ss_pred chhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHH
Confidence 456888899999988765443211 11 1245666677766555532 12455555555555555432
Q ss_pred --ccchhHhHHHHHHHH-HHHhcCC---------CCChHH-------------HHHHHHHHHHHHHHhHHHhhhcCChHH
Q 001749 238 --APLLGDSVKSIVHFS-LEVSSSH---------NLEPNT-------------RHQAIQIISWLAKYKYNSLKKHKLVIP 292 (1018)
Q Consensus 238 --~~~~~~~~~~li~~l-~~~~~~~---------~~~~~~-------------r~~a~~~l~~~~~~~~~~~~~~~~~~~ 292 (1018)
.++++||+..+++-. +.++.-. |..+-+ +..|..|+..++.++++ ..++.
T Consensus 336 ~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~k-----e~l~k 410 (1010)
T KOG1991|consen 336 STWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGK-----ETLPK 410 (1010)
T ss_pred HHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcch-----hhhhh
Confidence 567788888776532 2222111 112222 34577788888876533 25678
Q ss_pred HHHHHhhhhccCCCCC-CCCCCcHHHHHHHHHHHHHHHcc-h----hch-HHHHHHHHhhhcCCChhHHHHHHHHHHHHh
Q 001749 293 ILQVMCPLLAESNEAG-EDDDLAPDRAAAEVIDTMALNLA-K----HVF-PPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (1018)
Q Consensus 293 i~~~l~~~l~~~~~d~-~d~~~~~~~~a~~~l~~l~~~~~-~----~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 365 (1018)
++..+..+++...++. +.++......|...++.++..+. + ..+ ..+.+++.+.++|+--.-|.-|++.++..+
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~ 490 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFS 490 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHH
Confidence 8888999988765542 22222333457777777776554 1 222 235556666788888889999999999998
Q ss_pred h-cChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhcC---HHHHHhhhhHHHHHHHhccCCChHHHHHHH
Q 001749 366 E-GCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQ---PEIVSHYESVLPCILNALEDESDEVKEKSY 440 (1018)
Q Consensus 366 ~-~~~~~~~~~l~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~---~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~ 440 (1018)
+ ..++. ..+.+++....++|. |.+..||-.|+.+|..+..+.. +.+.++++++|..+++..++-+.. ...
T Consensus 491 ~~df~d~--~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End---~Lt 565 (1010)
T KOG1991|consen 491 SIDFKDP--NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND---DLT 565 (1010)
T ss_pred hccCCCh--HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh---HHH
Confidence 4 33332 456788888888888 8899999999999999998875 336678888888888877765432 345
Q ss_pred HHHHHHHhhhccccccchHHHHHHHHHh----hcC---CCHhHHH------HHHHHHHHHHHHhhcc---chhhHHHHHH
Q 001749 441 YALAAFCEDMGEEILPFLDPLMGKLLAA----LEN---SPRNLQE------TCMSAIGSVAAAAEQA---FIPYAERVLE 504 (1018)
Q Consensus 441 ~al~~l~~~~~~~~~~~~~~l~~~l~~~----l~~---~~~~vr~------~al~al~~l~~~~~~~---~~~~~~~i~~ 504 (1018)
.++..++..+++++.||..++++.|... +++ .+..... ..+.++.++...+.+. +....+.++|
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6778888889999999988877776554 443 2233333 4444455555555432 2233355666
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcc--
Q 001749 505 LLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFA-- 582 (1018)
Q Consensus 505 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~-- 582 (1018)
.+..++...-. .....+++.+..+.- -...+.|..-.+++.+++.++.+..+....++-++.+.....+..+.
T Consensus 646 vi~~iL~~~i~---dfyeE~~ei~~~~t~--~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~ 720 (1010)
T KOG1991|consen 646 VIGFILKNDIT---DFYEELLEIVSSLTF--LSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSN 720 (1010)
T ss_pred HHHHHHHHhhH---HHHHHHHHHHhhhhh--hhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhcc
Confidence 66666654321 122223332222211 11235566666777777766665555555566666666655554442
Q ss_pred -cchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHccc
Q 001749 583 -QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS 661 (1018)
Q Consensus 583 -~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~~ 661 (1018)
.|+..+...+-..+...+ ....+.+.|++.+..++-++++
T Consensus 721 ~~y~~il~~i~~~~l~~e~---------------------------------------~~D~d~~~a~kLle~iiL~~kg 761 (1010)
T KOG1991|consen 721 PDYLQILLEIIKKVLTSEN---------------------------------------GEDSDCESACKLLEVIILNCKG 761 (1010)
T ss_pred chHHHHHHHHHHHHHcCCC---------------------------------------CchHHHHHHHHHHHHHHHHhcC
Confidence 233444444333332211 1112378899999999999988
Q ss_pred cCcchHHHHH
Q 001749 662 SYAPFLEESL 671 (1018)
Q Consensus 662 ~~~p~~~~~~ 671 (1018)
..-.|++..+
T Consensus 762 ~~dq~iplf~ 771 (1010)
T KOG1991|consen 762 LLDQYIPLFL 771 (1010)
T ss_pred cHhhHhHHHH
Confidence 5544544433
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=4e-13 Score=142.88 Aligned_cols=361 Identities=16% Similarity=0.195 Sum_probs=262.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhhc-ccc-ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhH
Q 001749 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQ-TFR-PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (1018)
Q Consensus 120 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~-~~~-~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~ 197 (1018)
.+.+.+.+.|.+...+..+...+..+...... -+. -....++|.+..++....++.++..|.+++.+++.-..+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 56777777888888888888888887754321 111 1223678899999975478999999999999998866543333
Q ss_pred HHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 001749 198 VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (1018)
Q Consensus 198 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~l~~~~~~~~~~~~~r~~a~~~l~~~ 276 (1018)
..-.+-+|.++.. +.+++.+++..|.++|+.++...+.+=+-.+. ..++.++..+.+.+ .....+.+...++.+
T Consensus 148 vv~agavp~fi~L----l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsNl 222 (514)
T KOG0166|consen 148 VVDAGAVPIFIQL----LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSNL 222 (514)
T ss_pred cccCCchHHHHHH----hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHHH
Confidence 3335667776664 67889999999999999999876543322221 23444455555442 245677788888888
Q ss_pred HHHhH-HHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcch---hch-HHHHHHHHhhhcCCCh
Q 001749 277 AKYKY-NSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HVF-PPVFEFASVSCQNASP 351 (1018)
Q Consensus 277 ~~~~~-~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~ 351 (1018)
++.+. .- ....+.++++.+..++...|+ .+..-|..++..++..-.+ .++ .-+.+.+...+.+.+.
T Consensus 223 crgk~P~P--~~~~v~~iLp~L~~ll~~~D~-------~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 223 CRGKNPSP--PFDVVAPILPALLRLLHSTDE-------EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HcCCCCCC--cHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 87552 10 001456788888888876543 4666778888888744331 111 3466777788999999
Q ss_pred hHHHHHHHHHHHHhhcChHHHHHhH-HHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhc
Q 001749 352 KYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNAL 428 (1018)
Q Consensus 352 ~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l 428 (1018)
..+-.|++++|.|+.|........+ ...+|.+...+. .+...+|..|||+++.++......++..+ ..++|.|++.+
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l 373 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL 373 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence 9999999999999988765543333 246788888887 66777999999999999987666666544 68999999999
Q ss_pred cCCChHHHHHHHHHHHHHHhhhccccccchH--HHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc
Q 001749 429 EDESDEVKEKSYYALAAFCEDMGEEILPFLD--PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1018)
Q Consensus 429 ~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~ 494 (1018)
+..+-+.|..|+||+.+++.........|+- .+++.+..+|.-.+..+-..++.++..+....+..
T Consensus 374 ~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~ 441 (514)
T KOG0166|consen 374 QTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE 441 (514)
T ss_pred hccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence 9998899999999999999887655556654 48889999997788888999999999888776543
No 36
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=5.3e-08 Score=111.89 Aligned_cols=782 Identities=14% Similarity=0.131 Sum_probs=402.6
Q ss_pred HHHHHHhhhhhhc-cccccHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhcccCChhhHHHHH--hhHHHHHHHHHHH
Q 001749 139 LILFSSLTETIGQ-TFRPHFADMQALLLKCLQ-DETSNRVRIAALKAIGSFLEFTNDGAEVVKFR--EFIPSILNVSRQC 214 (1018)
Q Consensus 139 l~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~-d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~ll~~l~~~ 214 (1018)
.++|.-++.+.|. .+...+++++..+..+++ ++.+..|+..++.||..++.... ...|. .....+...+. .
T Consensus 72 ~~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd----~~aW~~~~t~~~~~~il~-~ 146 (1176)
T KOG1248|consen 72 AYLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQD----ASAWSYSSTKTELFGILA-F 146 (1176)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcc----hhhhccccHHHHHHHHHH-H
Confidence 6788888888775 556667777777777776 22788899999999999876532 12222 22222333332 2
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCCccchh---HhHHHHHHHHHHHhcCCCCChHHHHH---HHHHHHHHHHHhHHHhhhcC
Q 001749 215 LASGEEDVAVIAFEIFDELIESPAPLLG---DSVKSIVHFSLEVSSSHNLEPNTRHQ---AIQIISWLAKYKYNSLKKHK 288 (1018)
Q Consensus 215 l~~~~~~~~~~a~~~l~~l~~~~~~~~~---~~~~~li~~l~~~~~~~~~~~~~r~~---a~~~l~~~~~~~~~~~~~~~ 288 (1018)
.-+..|.++..+.+.+..+....+..+. |-...+..+|+..++..-. +..... .+.++.......|. +
T Consensus 147 ~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~-~a~~t~v~~~L~Ll~~~~~~~p~-----~ 220 (1176)
T KOG1248|consen 147 AAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLG-SAENTTVLRSLMLLRDVLSTFPR-----P 220 (1176)
T ss_pred HhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHhhccCCH-----H
Confidence 2356788999999999988875543332 2233344555555443211 111222 22333333322221 2
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcch----hchHHHHHHHHhhhcCCC-hhHHHHHHHHH--
Q 001749 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK----HVFPPVFEFASVSCQNAS-PKYREAAVTAI-- 361 (1018)
Q Consensus 289 ~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~~l~~~l~~~~-~~~r~aal~~l-- 361 (1018)
.+.++-..++..+...+ ..+.-.+.+|+..+...-+. .....++..+.++--+.+ ...-.+-+.++
T Consensus 221 li~sl~e~lL~i~~~s~-------v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~ 293 (1176)
T KOG1248|consen 221 LIKSLCEVLLNITTESP-------VLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNE 293 (1176)
T ss_pred HHHHHHHHHHhhcccch-------HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 55566666666666543 13455667777777655443 112233333333322221 11111111111
Q ss_pred --HHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHH
Q 001749 362 --GIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKS 439 (1018)
Q Consensus 362 --~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a 439 (1018)
..++..-.+.....++.+++.++.++..+++.+-+++..++..+.+............ .+...|.-....+-..+
T Consensus 294 ~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~---~~~~~l~~kf~~~~~~i 370 (1176)
T KOG1248|consen 294 AHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVTVIDALCSK---QLHSLLDYKFHAVWRFI 370 (1176)
T ss_pred HHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCcccHHHHHH---HHHHHHcchHHHHHHHH
Confidence 1112222344455688899988888888999999999999988876654311111112 23333333334466778
Q ss_pred HHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc-chhhH-------------HHHHHH
Q 001749 440 YYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA-FIPYA-------------ERVLEL 505 (1018)
Q Consensus 440 ~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~-~~~~~-------------~~i~~~ 505 (1018)
..++..+++.+|+...|++-..++.+...-.+++..-+...=.|||+.+.++|.. +...+ ..++|+
T Consensus 371 lqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPv 450 (1176)
T KOG1248|consen 371 LQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPV 450 (1176)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHH
Confidence 8899999999999888999999998888766666555567777888888888742 11111 124444
Q ss_pred HHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCC-Ch-hHHHHHHHHHHHHHHHc--ccCc
Q 001749 506 LKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE-FS-ELREYTHGFFSNIAGVL--EDGF 581 (1018)
Q Consensus 506 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~-~~-~~~~~~~~~l~~l~~~~--~~~~ 581 (1018)
|+..+...+ ++.+ .+.|.|++..+.....+.-... .. .++....+.|+-+-.-| |.+.
T Consensus 451 LR~~i~~A~-------------La~F-----~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl 512 (1176)
T KOG1248|consen 451 LRDYIIGAS-------------LAFF-----TEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDL 512 (1176)
T ss_pred HHHhhccCc-------------HHHH-----HHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccH
Confidence 444332210 0000 0122222222222211110011 11 22333333333333211 2233
Q ss_pred ccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHcc-
Q 001749 582 AQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK- 660 (1018)
Q Consensus 582 ~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~~- 660 (1018)
..-+..+-|.+...+...+ +.|...|.+|..++....
T Consensus 513 ~~sF~~la~~l~~al~~~~------------------------------------------elr~~Ic~sL~~Lv~~n~~ 550 (1176)
T KOG1248|consen 513 AESFTDLAPILGAALLKRP------------------------------------------ELRETICNSLRMLVEQNKP 550 (1176)
T ss_pred HHHHHHHHHHHHHHHhcch------------------------------------------HhHHHHHHHHHHHHHcCCC
Confidence 3334444455544443221 224445555554444321
Q ss_pred ------------ccCcchHHHHHHHhhcCCChh-HHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccH
Q 001749 661 ------------SSYAPFLEESLKILSHNEGPA-KAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVE 727 (1018)
Q Consensus 661 ------------~~~~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~ 727 (1018)
+.-.++++..+..-.+..... +........+-......-.....++.....+++++.........-.
T Consensus 551 ~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~ 630 (1176)
T KOG1248|consen 551 SSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVAS 630 (1176)
T ss_pred cchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhh
Confidence 000112222222211111000 1111111111111111111233445555555555544433211111
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCC---CCCCcCCchhhHHHHHHHHhHHHHHHHH-hCCCh-HHHHHHHHHHHHHhh
Q 001749 728 PYMSRLVDATLLLLREESTCQQPDNDS---DIEDDDDTAHDEVIMDAVSDLLPAFAKS-MGPHF-APIFAKLFDPLMKFA 802 (1018)
Q Consensus 728 ~~~~~i~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~-~~~~~~l~~~l~~~l 802 (1018)
.....+++.+. ...+++....-+ ..+...+......+..-.-+++..+... .|..+ ......+...+....
T Consensus 631 ~~~~slLdl~~----~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~ 706 (1176)
T KOG1248|consen 631 FKTLSLLDLLI----ALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSF 706 (1176)
T ss_pred HHHHHHHHHHH----hhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH
Confidence 11111221111 111111100000 0000111111223333444555555543 11122 234455666666666
Q ss_pred ccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHH--hhcCcch----hhHHHH
Q 001749 803 KSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELC--KNGGESA----LKYYGD 876 (1018)
Q Consensus 803 ~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~--~~~~~~~----~~~~~~ 876 (1018)
++... ..+...+.|+..+++.++.....+++..+|.++-.+.+.+...|++|..+|-.+. ...-+.. ...+.+
T Consensus 707 qs~~~-~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne 785 (1176)
T KOG1248|consen 707 QSSSS-PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE 785 (1176)
T ss_pred hccch-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH
Confidence 65544 3488899999999999886667788889998888788889999999988877776 2221111 123444
Q ss_pred HHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCCC---hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcCh-h
Q 001749 877 ILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP---LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNP-Q 952 (1018)
Q Consensus 877 il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~~---~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~-~ 952 (1018)
++..|...+.+......+.+ +-+++.++..+...++ +.+++.....+|- ....+.+..+++++-.++..-+. .
T Consensus 786 fl~~Isagl~gd~~~~~as~--Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~ 862 (1176)
T KOG1248|consen 786 FLSIISAGLVGDSTRVVASD--IVAITHILQEFKNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEEC 862 (1176)
T ss_pred HHHHHHhhhcccHHHHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 44444433332221112222 6788888887666553 6777777777775 34567788888999888864433 3
Q ss_pred hhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHhhHHHHHhcCCHHHHHHHHh
Q 001749 953 ILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAA 1013 (1018)
Q Consensus 953 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1013 (1018)
+.++++.++..+...... ..-..+..+-.++..+...|+. +.+-+-+|.+.++.|..
T Consensus 863 l~~~~~~LL~sll~ls~d--~k~~~r~Kvr~LlekLirkfg~--~eLe~~~pee~~klL~n 919 (1176)
T KOG1248|consen 863 LSPHLEELLPSLLALSHD--HKIKVRKKVRLLLEKLIRKFGA--EELESFLPEEDMKLLTN 919 (1176)
T ss_pred HhhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhCH--HHHHhhCHHHHHHHHHH
Confidence 568999999999887653 2345777788888888887753 23333345666666554
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.58 E-value=2.4e-11 Score=141.89 Aligned_cols=471 Identities=19% Similarity=0.247 Sum_probs=321.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhc-CCCcHHHHHHHHh---cCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHH
Q 001749 7 LLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLR---TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (1018)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~~~~-~p~~~~~l~~~l~---~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~ 82 (1018)
+++..+.|.|.+.|+-+--.+..+.. +|+.+.-..+.+. +++++.+|.+|...+.+.. +++..+.+...
T Consensus 46 ~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~ 118 (526)
T PF01602_consen 46 EVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPD 118 (526)
T ss_dssp HHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHH
Confidence 44555567889999999888887764 5664444444443 3568999999988887763 56777888888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccc-hHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHH
Q 001749 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPD-LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ 161 (1018)
Q Consensus 83 Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~-ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~ 161 (1018)
+.+.+. ++++.||+.++.++..+.+.. | +..+. +++.+.+.+.++++..+.+|+.++..+ +..++......+.+.
T Consensus 119 v~~ll~-~~~~~VRk~A~~~l~~i~~~~-p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~ 194 (526)
T PF01602_consen 119 VIKLLS-DPSPYVRKKAALALLKIYRKD-P-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLI 194 (526)
T ss_dssp HHHHHH-SSSHHHHHHHHHHHHHHHHHC-H-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred HHHHhc-CCchHHHHHHHHHHHHHhccC-H-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence 888887 589999999999999998864 3 24444 799999999999999999999999999 333332235567777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccch
Q 001749 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL 241 (1018)
Q Consensus 162 ~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 241 (1018)
..+.+.+.+ +++-.+...++++..+....... ... ..+++.+.. .+++.++.+..++.+++..+.....
T Consensus 195 ~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~--~~~-~~~i~~l~~----~l~s~~~~V~~e~~~~i~~l~~~~~--- 263 (526)
T PF01602_consen 195 RILCQLLSD-PDPWLQIKILRLLRRYAPMEPED--ADK-NRIIEPLLN----LLQSSSPSVVYEAIRLIIKLSPSPE--- 263 (526)
T ss_dssp HHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHH--HHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHSSSHH---
T ss_pred HHhhhcccc-cchHHHHHHHHHHHhcccCChhh--hhH-HHHHHHHHH----HhhccccHHHHHHHHHHHHhhcchH---
Confidence 777777777 88889998999888776654211 100 234444444 4555677888888888887665322
Q ss_pred hHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHH
Q 001749 242 GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAE 321 (1018)
Q Consensus 242 ~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~ 321 (1018)
.+..+++.+...+.+ .++.+|..+++.+..++...+..+.. ... .+..+.. +++...+..+..
T Consensus 264 --~~~~~~~~L~~lL~s--~~~nvr~~~L~~L~~l~~~~~~~v~~---~~~----~~~~l~~------~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 264 --LLQKAINPLIKLLSS--SDPNVRYIALDSLSQLAQSNPPAVFN---QSL----ILFFLLY------DDDPSIRKKALD 326 (526)
T ss_dssp --HHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHCCHCHHHHGT---HHH----HHHHHHC------SSSHHHHHHHHH
T ss_pred --HHHhhHHHHHHHhhc--ccchhehhHHHHHHHhhcccchhhhh---hhh----hhheecC------CCChhHHHHHHH
Confidence 455566666666663 47789999999999888766433321 111 1112221 233467888888
Q ss_pred HHHHHHHHcchhchHHHHHHHHhhh-cCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 001749 322 VIDTMALNLAKHVFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (1018)
Q Consensus 322 ~l~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~ 400 (1018)
.+..++..-. +..+++.+..++ ...+...|..++..++.++..... ..+..++.+++.+...+..+...+..
T Consensus 327 lL~~l~~~~n---~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~----~~~~~v~~l~~ll~~~~~~~~~~~~~ 399 (526)
T PF01602_consen 327 LLYKLANESN---VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP----DAEWYVDTLLKLLEISGDYVSNEIIN 399 (526)
T ss_dssp HHHHH--HHH---HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS----SHHHHHHHHHHHHHCTGGGCHCHHHH
T ss_pred HHhhcccccc---hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc----hHHHHHHHHHHhhhhccccccchHHH
Confidence 8777776443 333555555556 344777999999999999986533 33456667777777777888888888
Q ss_pred HHHHhHhhcCHHHHHhhhhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHH
Q 001749 401 ALGQFAEYLQPEIVSHYESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQET 479 (1018)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~ 479 (1018)
.+..+....+.. ...++..+.+.+.+ ..+.++..++|.+|.+.+..++ .. ....++..+...+...+..+|..
T Consensus 400 ~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ 473 (526)
T PF01602_consen 400 VIRDLLSNNPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQ 473 (526)
T ss_dssp HHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHH
Confidence 888887664322 23456666666665 4567899999999999888765 22 56778888888888788899999
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 001749 480 CMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (1018)
Q Consensus 480 al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 532 (1018)
++.++..+....+..- ..+.+.+.+.+.... ++.+..+|.+|.+.+..+-
T Consensus 474 ilt~~~Kl~~~~~~~~--~~~~i~~~~~~~~~~-~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 474 ILTALAKLFKRNPENE--VQNEILQFLLSLATE-DSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHHHSCSTT--HHHHHHHHHHCHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCchh--hHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHc
Confidence 9999999987765321 123555555554442 2345567778887776654
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.7e-12 Score=133.25 Aligned_cols=353 Identities=14% Similarity=0.159 Sum_probs=246.2
Q ss_pred CCChhHHHHHHHHHHHhhhhh-hccCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCC-C--CccchHHH
Q 001749 47 AKTPNVRQLAAVLLRKKITGH-WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-G--EWPDLLPF 122 (1018)
Q Consensus 47 ~~~~~~R~~a~~~l~~~i~~~-w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-~--~w~~ll~~ 122 (1018)
+.++..+..|..-+|+.+.+- ...++.-.+..+...+.+.|....++.++..++-++..|++..... . .-...+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 556777888888888887642 2445555667788888999987678999999999999999854221 1 12456889
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhhhhhccccccH--HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHH
Q 001749 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKF 200 (1018)
Q Consensus 123 l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 200 (1018)
+.+++.+++...++.|..+|+.++.+.+. +..++ ..+++.++..+...........+.|++++++.....+......
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v 235 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV 235 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 99999999999999999999999876542 22222 2345555666665233456778999999999887433333444
Q ss_pred HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 001749 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (1018)
Q Consensus 201 ~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~ 279 (1018)
..++|.+. ..+...|+++...+++++..+.+...+..+-.+. .+++.+.+++.+. +..++..|+..+..++..
T Consensus 236 ~~iLp~L~----~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 236 APILPALL----RLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNIVTG 309 (514)
T ss_pred HHHHHHHH----HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccceeec
Confidence 45555444 4577889999999999999999877665443332 1333333444433 333444455444443321
Q ss_pred hHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc-CCChhHHHHHH
Q 001749 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ-NASPKYREAAV 358 (1018)
Q Consensus 280 ~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~aal 358 (1018)
..... ++ . +-...++.+..++. ++....|+.|+
T Consensus 310 ~d~QT------------------------------------q~----v------i~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 310 SDEQT------------------------------------QV----V------INSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred cHHHH------------------------------------HH----H------HhcChHHHHHHHhccCcchhHHHHHH
Confidence 11000 00 0 01224455555555 66667899999
Q ss_pred HHHHHHhhcChHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHhccCCChHH
Q 001749 359 TAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEV 435 (1018)
Q Consensus 359 ~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v 435 (1018)
+.++.|..|..+.+...++ .++|.++..|...+.++|..|+|+++.++....++...|+ ..+++.+...|...+.++
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i 423 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI 423 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH
Confidence 9999999999887766654 5899999999999999999999999999987766555554 568999999998888888
Q ss_pred HHHHHHHHHHHHhhhcc
Q 001749 436 KEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 436 ~~~a~~al~~l~~~~~~ 452 (1018)
...+..++.++.+..+.
T Consensus 424 i~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 424 ILVALDGLENILKVGEA 440 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999998877643
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.49 E-value=2.6e-09 Score=123.30 Aligned_cols=446 Identities=12% Similarity=0.069 Sum_probs=259.9
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcccc
Q 001749 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (1018)
Q Consensus 75 ~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~ 154 (1018)
....||+.| .+......+..+-++|+.+... .....+++.+..++.+++...|..+...+....+..++.
T Consensus 33 e~~ELr~~L----~s~~~~~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-- 102 (746)
T PTZ00429 33 EGAELQNDL----NGTDSYRKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-- 102 (746)
T ss_pred hHHHHHHHH----HCCCHHHHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--
Confidence 345566555 2322333455555566655543 245778999999999999999998888777765433321
Q ss_pred ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 001749 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (1018)
Q Consensus 155 ~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~ 234 (1018)
.--.++.|.+-+.| +++.+|..|+++++.+.. ..+++.++..+.+++.+.++-+|+.|.-++.++.
T Consensus 103 --alLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly 168 (746)
T PTZ00429 103 --ALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRV-----------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLF 168 (746)
T ss_pred --HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22345677777888 899999999999877543 2367777778888899999999999999999998
Q ss_pred cCCccchh--HhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCC
Q 001749 235 ESPAPLLG--DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (1018)
Q Consensus 235 ~~~~~~~~--~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~ 312 (1018)
...+..+. ..++.+.. ++. |.++.+...|+..+..+.+..+..+. .....+..++..+.+.+ +
T Consensus 169 ~~~pelv~~~~~~~~L~~----LL~--D~dp~Vv~nAl~aL~eI~~~~~~~l~---l~~~~~~~Ll~~L~e~~------E 233 (746)
T PTZ00429 169 HDDMQLFYQQDFKKDLVE----LLN--DNNPVVASNAAAIVCEVNDYGSEKIE---SSNEWVNRLVYHLPECN------E 233 (746)
T ss_pred hhCcccccccchHHHHHH----Hhc--CCCccHHHHHHHHHHHHHHhCchhhH---HHHHHHHHHHHHhhcCC------h
Confidence 87776542 33444443 333 45788999999999888775543221 22333333444443322 2
Q ss_pred CcHHHHHHHHHHHHHHHcc--hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHhhcCC
Q 001749 313 LAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRD 389 (1018)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d 389 (1018)
|.. ...|+.++...+ +.-...++..+...+++.+..+..+|+.++-.+...+. +........+-+.++.. ..
T Consensus 234 W~Q----i~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~s 308 (746)
T PTZ00429 234 WGQ----LYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SR 308 (746)
T ss_pred HHH----HHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hC
Confidence 433 244555554433 22234566777777888888888888888887776543 22222233344444444 45
Q ss_pred CChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhh
Q 001749 390 PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (1018)
Q Consensus 390 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 469 (1018)
.++.+|+.++..+..+....+..+.++ +..+.-...|+. .|+......|..++... -+..++..|....
T Consensus 309 s~~eiqyvaLr~I~~i~~~~P~lf~~~----~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~------Nv~~IL~EL~eYa 377 (746)
T PTZ00429 309 RDAETQYIVCKNIHALLVIFPNLLRTN----LDSFYVRYSDPP-FVKLEKLRLLLKLVTPS------VAPEILKELAEYA 377 (746)
T ss_pred CCccHHHHHHHHHHHHHHHCHHHHHHH----HHhhhcccCCcH-HHHHHHHHHHHHHcCcc------cHHHHHHHHHHHh
Confidence 678899999988888776654333222 222223333432 35555555555444321 1234445555555
Q ss_pred cCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHH--------------HHHHHHHhcc----------------Cchhhh
Q 001749 470 ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVL--------------ELLKIFMVLT----------------NDEDLR 519 (1018)
Q Consensus 470 ~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~--------------~~l~~~l~~~----------------~~~~~~ 519 (1018)
.+.+...+..++.+||.++...+.....+++.++ ..++.++... .-.+..
T Consensus 378 ~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~ 457 (746)
T PTZ00429 378 SGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEE 457 (746)
T ss_pred hcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHH
Confidence 5555555666666666555443322111111111 1111111110 011112
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCc
Q 001749 520 SRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGF 581 (1018)
Q Consensus 520 ~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 581 (1018)
.|...+..+|..+..+ +..+.++..+++.+..+++.+|-.++.+...+.-..+.+.
T Consensus 458 AKaaiiWILGEy~~~I------~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~ 513 (746)
T PTZ00429 458 AKVSLLWMLGEYCDFI------ENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM 513 (746)
T ss_pred HHHHHHHHHHhhHhhH------hhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH
Confidence 3434455555554433 2345667666666666677888888888777776655443
No 40
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.1e-08 Score=110.62 Aligned_cols=471 Identities=14% Similarity=0.125 Sum_probs=282.6
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcC-CChHHHHHHHHHHHHhhhhhhcc
Q 001749 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQT 152 (1018)
Q Consensus 74 ~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~ 152 (1018)
+..+.+.+.|++.+. +++..||..+|+.++.++... |..--.+++..+++.+.. ++...-++|+.+|+.++... =.
T Consensus 337 eivE~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lL 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LL 413 (1133)
T ss_pred HHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Cc
Confidence 566788889999988 699999999999999999875 211224456666664433 33567789999999987532 11
Q ss_pred ccccHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 001749 153 FRPHFADMQALLLKCLQDE-------TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (1018)
Q Consensus 153 ~~~~~~~l~~~l~~~l~d~-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 225 (1018)
+...++.++|++..++.-+ ....||.+|+-.+-++...........-.+.+.+.++.. .+-|++-..|.+
T Consensus 414 lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~---AlFDrevncRRA 490 (1133)
T KOG1943|consen 414 LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV---ALFDREVNCRRA 490 (1133)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH---HhcCchhhHhHH
Confidence 2235678888888887631 356799999888777776654322111223344444433 455667788999
Q ss_pred HHHHHHHHhcCCccc-hhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhh-hcc
Q 001749 226 AFEIFDELIESPAPL-LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL-LAE 303 (1018)
Q Consensus 226 a~~~l~~l~~~~~~~-~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~-l~~ 303 (1018)
|.-++.+.++..+.+ .+--+-..+ +...-..|..+..-+...+... ++|..++++.++.. +++
T Consensus 491 AsAAlqE~VGR~~n~p~Gi~Lis~~---------dy~sV~~rsNcy~~l~~~ia~~------~~y~~~~f~~L~t~Kv~H 555 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPHGISLISTI---------DYFSVTNRSNCYLDLCVSIAEF------SGYREPVFNHLLTKKVCH 555 (1133)
T ss_pred HHHHHHHHhccCCCCCCchhhhhhc---------chhhhhhhhhHHHHHhHHHHhh------hhHHHHHHHHHHhccccc
Confidence 999999999876553 111111111 1123334555443332222111 23666777666554 777
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHH--HHh------
Q 001749 304 SNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM--KEK------ 375 (1018)
Q Consensus 304 ~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~--~~~------ 375 (1018)
|+. ..|..+..+|..++...++......++.+.....+.+...|++...+.|.+..++...- ..+
T Consensus 556 Wd~-------~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i 628 (1133)
T KOG1943|consen 556 WDV-------KIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI 628 (1133)
T ss_pred ccH-------HHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh
Confidence 764 67888999999999888865554455545555677889999999999999887654211 111
Q ss_pred --HHHHHHHHHhhcCCC--ChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 376 --LESVLHIVLGALRDP--EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 376 --l~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
+..+++.+...-... ....|.+.+..+..+...-.+-....+ +..-..+...+.+++ .+|..+.++++.++...
T Consensus 629 ~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y 707 (1133)
T KOG1943|consen 629 AGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTY 707 (1133)
T ss_pred hhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHH
Confidence 112233222211111 246777888888877655433222221 223333334444555 78999999999999876
Q ss_pred ccccccchHHHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCch-hhhhHHHHHHHH
Q 001749 451 GEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDE-DLRSRARATELL 528 (1018)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~~~~r~~a~~~l 528 (1018)
-..=.-...+++...+..+.+. ...+|.....++|.+-...-. .++.+.+ ...++...... ...-|...+..+
T Consensus 708 ~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~--~~~q~~l---c~~~l~~~p~d~~a~aR~~~V~al 782 (1133)
T KOG1943|consen 708 VKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH--RHLQEKL---CKLVLELLPSDAWAEARQQNVKAL 782 (1133)
T ss_pred HhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc--hHHHHHH---HHHHhccCcccccHHHHHHHHHHH
Confidence 2211111125666666666655 566777666666655422211 0111222 22222221111 223466677777
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHhccCC---C-----ChhHHHHHHHHHHHHHHHcc
Q 001749 529 GLVAESVGRARMEPILPPFVEAAISGFGL---E-----FSELREYTHGFFSNIAGVLE 578 (1018)
Q Consensus 529 ~~l~~~~g~~~~~~~~~~l~~~l~~~l~~---~-----~~~~~~~~~~~l~~l~~~~~ 578 (1018)
..+...++...+.....++++.+++++.+ + ..-+|+.++.++..+...+.
T Consensus 783 ~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 783 AHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 77777777556777778888888887762 1 23489999998888876554
No 41
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=6.1e-10 Score=117.69 Aligned_cols=451 Identities=16% Similarity=0.179 Sum_probs=274.9
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhh--cCCHHHHHH
Q 001749 21 RQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL--EHSAPVRRA 98 (1018)
Q Consensus 21 ~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~--e~~~~vr~~ 98 (1018)
.+|-.+|+++++.++.+..+-+++....+.....+|+..+|+++...+..+++..-..+|+.++..+.. +..+.+|.+
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~tQ 81 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRTQ 81 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHHH
Confidence 468889999999999999999999877788899999999999999999999998888888866665542 234489999
Q ss_pred HHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhh---------------ccccccHHHHHHH
Q 001749 99 SANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG---------------QTFRPHFADMQAL 163 (1018)
Q Consensus 99 ~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~---------------~~~~~~~~~l~~~ 163 (1018)
++-+++.++-+. ..|.+-++.+.+...+..+. .-.-+.+|..+.+... +.+......++..
T Consensus 82 L~vavA~Lal~~---~~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~ 157 (559)
T KOG2081|consen 82 LAVAVAALALHM---PEWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVF 157 (559)
T ss_pred HHHHHHHHHHHh---HhhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHH
Confidence 999999999775 27999888888887776665 4455666666665432 1223334455666
Q ss_pred HHHhcCCC--CCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHh--------------------------
Q 001749 164 LLKCLQDE--TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL-------------------------- 215 (1018)
Q Consensus 164 l~~~l~d~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l-------------------------- 215 (1018)
+..++++. ++..+-..++++++++.....-+ ...+....| ++..++..+
T Consensus 158 l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~--~d~v~a~~p-Li~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~ 234 (559)
T KOG2081|consen 158 LSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFP--PDQVLASFP-LITLAFRSLSDDELHEEATECICALLYCSLDRSEG 234 (559)
T ss_pred HHHHHhhcCCChhhHHHHHHHHHhhhhhhccCC--HHHHHhhhH-HHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhcc
Confidence 66677542 23556667778887776532111 000000000 111111111
Q ss_pred ----------------------hcCCHHHHHHHHHHHHHHhcC-------CccchhHhHHHHHHHHHHHhcCCCCChHHH
Q 001749 216 ----------------------ASGEEDVAVIAFEIFDELIES-------PAPLLGDSVKSIVHFSLEVSSSHNLEPNTR 266 (1018)
Q Consensus 216 ----------------------~~~~~~~~~~a~~~l~~l~~~-------~~~~~~~~~~~li~~l~~~~~~~~~~~~~r 266 (1018)
...+.+...+.++++.++.+. .+..+-+ ++..++-+.... +.++-
T Consensus 235 ~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~----~vellLl~~~h~--~~evi 308 (559)
T KOG2081|consen 235 LPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLR----IVELLLLVAGHN--DTEVI 308 (559)
T ss_pred CchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchh----HHHHHHHhccCC--chhhh
Confidence 122333344444444444332 2221111 222223333322 34667
Q ss_pred HHHHHHHHHHHHHhHH----Hhhh--cCChHHHHHHHhhhhccCC--CC---CCCCCCcHHHHHHHHHHHHHHHcc-hhc
Q 001749 267 HQAIQIISWLAKYKYN----SLKK--HKLVIPILQVMCPLLAESN--EA---GEDDDLAPDRAAAEVIDTMALNLA-KHV 334 (1018)
Q Consensus 267 ~~a~~~l~~~~~~~~~----~~~~--~~~~~~i~~~l~~~l~~~~--~d---~~d~~~~~~~~a~~~l~~l~~~~~-~~~ 334 (1018)
...+.+|..+.+.-.. ...+ .++...++..+.....-.. ++ ++++-...|......+...+...| +..
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~ 388 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDEC 388 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 7778888877652111 1111 1244444555544433222 11 112223456677788888888888 666
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHH
Q 001749 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (1018)
Q Consensus 335 ~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 414 (1018)
+..+...+.+ +++.|..-+|+++.+..++......-.+.++.++..+.+. +....+|++++-.+|.++++... ..
T Consensus 389 lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~~-~p 463 (559)
T KOG2081|consen 389 LKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEWVEQ-HP 463 (559)
T ss_pred HHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHHHHh-Cc
Confidence 6666655544 6788999999999999999887655555667777766654 22333999999999999999742 22
Q ss_pred HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHHhh
Q 001749 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAE 492 (1018)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~al~~l~~~~~ 492 (1018)
..++.++..+...+.... ....+..++..++..+...+.+.++.+...+....+.. +..... .++.++.++...+
T Consensus 464 ~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a~-l~~~~s~i~~~lp 539 (559)
T KOG2081|consen 464 ELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAAC-LLQGISLIISNLP 539 (559)
T ss_pred HHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCC
Confidence 355666666777776653 66777888888888876555544444444333332221 122222 5555665555544
No 42
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.9e-06 Score=99.50 Aligned_cols=715 Identities=12% Similarity=0.081 Sum_probs=353.6
Q ss_pred HHHHHHHHHh-hcCCHHHHHHHHHHHHHHHcccCCCCCccc-----hHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhc-
Q 001749 79 VKQSLIESIT-LEHSAPVRRASANVVSIIAKYAVPAGEWPD-----LLPFLFQFSQSEQEEHREVALILFSSLTETIGQ- 151 (1018)
Q Consensus 79 i~~~Ll~~l~-~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~-----ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~- 151 (1018)
+-+.+...+. .+++..|++.+..|++.+.+...- ..|.. .+..+....-+..|..|..|...+..+....+-
T Consensus 94 ~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~-~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~ 172 (1176)
T KOG1248|consen 94 TLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDA-SAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFA 172 (1176)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcch-hhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCC
Confidence 4444444444 247899999999999998764222 46742 244444555678899999999999999865431
Q ss_pred --cccccHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHH
Q 001749 152 --TFRPHFADMQALLLKCLQDETSNRVRIAALK---AIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIA 226 (1018)
Q Consensus 152 --~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~---~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a 226 (1018)
...+-...+...+.+.+...-.+......++ .|...+...+ ..++..+.+.+...+...+..+...+
T Consensus 173 ~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p--------~~li~sl~e~lL~i~~~s~v~v~~~~ 244 (1176)
T KOG1248|consen 173 PDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFP--------RPLIKSLCEVLLNITTESPVLVLLEV 244 (1176)
T ss_pred ccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCC--------HHHHHHHHHHHHhhcccchHHHHHHH
Confidence 1122222223333333332111112222222 2222232222 23566666666666666777888999
Q ss_pred HHHHHHHhcCCccchhHhH-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH-H-------HhHHHhhhcCChHHHHHHH
Q 001749 227 FEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLA-K-------YKYNSLKKHKLVIPILQVM 297 (1018)
Q Consensus 227 ~~~l~~l~~~~~~~~~~~~-~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~-~-------~~~~~~~~~~~~~~i~~~l 297 (1018)
++|+..+....+..+...+ ..++..+.+.-- +.. +....-.|.... + ..+.... ...+.+++.+
T Consensus 245 ~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~p--s~~---D~~~t~~W~~v~~~~~~~la~~q~~~~~--~~~~~~~~~~ 317 (1176)
T KOG1248|consen 245 LQCLHSLFKKHPTALAAELNARLLTALMTLSP--SEN---DDLLTVAWLKVLNEAHDILATLQEEKAL--QALPRLFSLF 317 (1176)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhCC--Ccc---chHHHHHHHHHHHHHHHHHHHhCHHHHH--HhhhhhhhHH
Confidence 9999999988777444322 223333332211 111 112222222222 1 1111111 1344555566
Q ss_pred hhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHH-HHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhH
Q 001749 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEF-ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL 376 (1018)
Q Consensus 298 ~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 376 (1018)
+.++.... ......+.+++..+...... +.+.+-.. +..++.-.--..=...+..+..+.+.|.+...+++
T Consensus 318 ~t~~~s~~-------~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l 389 (1176)
T KOG1248|consen 318 FTILESLI-------EELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPEL 389 (1176)
T ss_pred HHHHhccc-------HHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHH
Confidence 65433222 13445566666655433322 22222222 22222211111122345666777777877766777
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHH-Hh-------------hhhHHHHHHHhccCC-----------
Q 001749 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV-SH-------------YESVLPCILNALEDE----------- 431 (1018)
Q Consensus 377 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~-------------~~~~l~~l~~~l~~~----------- 431 (1018)
...+..+...-.+++..-+..-=.|+|.....+||+.. .. -..++|.|-......
T Consensus 390 ~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivp 469 (1176)
T KOG1248|consen 390 TKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVP 469 (1176)
T ss_pred HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhccCcHHHHHHHHHH
Confidence 77777766654455555555666788888877777521 00 011222222222111
Q ss_pred ---------------C--hHHHHHHHHHHHHHHhhh---ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHh
Q 001749 432 ---------------S--DEVKEKSYYALAAFCEDM---GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (1018)
Q Consensus 432 ---------------~--~~v~~~a~~al~~l~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~ 491 (1018)
. .++-...+.-|-.++-.+ +-++..-+..+.+.+...+.... ..|...+.+|-.++...
T Consensus 470 la~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n 548 (1176)
T KOG1248|consen 470 LAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQN 548 (1176)
T ss_pred HHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcC
Confidence 1 101111111111121111 22333345666666666666544 88999999998888775
Q ss_pred h---------ccchhhHHHHHHHHHHHHhccCc---hhhhhHHHHHHHHH-HHHHhhhhhhcCCChHHHHHHHHhccCCC
Q 001749 492 E---------QAFIPYAERVLELLKIFMVLTND---EDLRSRARATELLG-LVAESVGRARMEPILPPFVEAAISGFGLE 558 (1018)
Q Consensus 492 ~---------~~~~~~~~~i~~~l~~~l~~~~~---~~~~~r~~a~~~l~-~l~~~~g~~~~~~~~~~l~~~l~~~l~~~ 558 (1018)
. +....|...++|.+.++...... .....|...++.+. ......+.+ ....+.+.+-......
T Consensus 549 ~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d----v~~~l~~s~~e~as~~ 624 (1176)
T KOG1248|consen 549 KPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD----VVGSLKDSAGELASDL 624 (1176)
T ss_pred CCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH----HHHHHHHHHHhHhccc
Confidence 1 23446777889988887764321 22233333343333 111111111 1111111111101111
Q ss_pred C----hhHHHHHHHHHHHHHHHcccC-cccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhccccc
Q 001749 559 F----SELREYTHGFFSNIAGVLEDG-FAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVR 633 (1018)
Q Consensus 559 ~----~~~~~~~~~~l~~l~~~~~~~-~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1018)
+ +...-..+..+..++.+..+. ...+. .+.|...
T Consensus 625 ~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e---------------------------------------- 663 (1176)
T KOG1248|consen 625 DESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFE---------------------------------------- 663 (1176)
T ss_pred hhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhh----------------------------------------
Confidence 1 111122222222222222111 00000 0111000
Q ss_pred ceeeecccchhHHHHHHHHHHHHHHccccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHH
Q 001749 634 NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTS 713 (1018)
Q Consensus 634 ~~~i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~ 713 (1018)
+.+.-..+..+.+.|..+... |+.+ ....+.++.+++.+...++. .........+.+
T Consensus 664 ----~~~~~~vQkK~yrlL~~l~~~------~s~~------------~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~ 720 (1176)
T KOG1248|consen 664 ----NSSSTKVQKKAYRLLEELSSS------PSGE------------GLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKC 720 (1176)
T ss_pred ----ccccHHHHHHHHHHHHHHhcC------Cchh------------hHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHH
Confidence 011112345566666665543 2222 23334455566666666653 233456678888
Q ss_pred HHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHH--HH-h--CC-Ch
Q 001749 714 IVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFA--KS-M--GP-HF 787 (1018)
Q Consensus 714 l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~-~--~~-~~ 787 (1018)
+..+++..+.. +..-+...+-.++-....+ +.......-+|+..++ .. + |. ..
T Consensus 721 L~~L~~~~~~e----~~~~i~k~I~EvIL~~Ke~-----------------n~~aR~~Af~lL~~i~~i~~~~d~g~e~~ 779 (1176)
T KOG1248|consen 721 LKRLLKLLSAE----HCDLIPKLIPEVILSLKEV-----------------NVKARRNAFALLVFIGAIQSSLDDGNEPA 779 (1176)
T ss_pred HHHHHHhccHH----HHHHHHHHHHHHHHhcccc-----------------cHHHHhhHHHHHHHHHHHHhhhcccccch
Confidence 88888887722 2222222222222211101 1112233334444444 21 1 21 11
Q ss_pred HHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcc-hHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhc
Q 001749 788 APIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP-IAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNG 866 (1018)
Q Consensus 788 ~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~ 866 (1018)
...++.+++.+...+-.+.. ..+...+-.+..++...+.. -.++++.++..+.-.+....++++.+|+..+..++...
T Consensus 780 ~~~lnefl~~Isagl~gd~~-~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDST-RVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHH-HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 22344455554444433322 22223245555555444443 35789999999999999999999999999999999998
Q ss_pred Ccc-hhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCC
Q 001749 867 GES-ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNP 910 (1018)
Q Consensus 867 ~~~-~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~ 910 (1018)
++. +.++.+++++.+..+..+ -...++-.+-..+-++++.++
T Consensus 859 pe~~l~~~~~~LL~sll~ls~d--~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 859 PEECLSPHLEELLPSLLALSHD--HKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred CHHHHhhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhC
Confidence 864 689999999998876642 235566666667777787764
No 43
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=8.2e-07 Score=97.94 Aligned_cols=690 Identities=13% Similarity=0.196 Sum_probs=353.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcC--CChHHHHHHHHHHHHhhh-hhhcc-
Q 001749 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS--EQEEHREVALILFSSLTE-TIGQT- 152 (1018)
Q Consensus 77 ~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s--~~~~~r~~al~~l~~l~~-~~~~~- 152 (1018)
+.+-+.|.+.+. +++.+|+.+-+.+...... ..++-. +.+.+.+ .++..|.+|...+...++ ...+.
T Consensus 5 e~l~~~l~qTl~--pdps~rk~aEr~L~~~e~q----~~y~l~---lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~ 75 (960)
T KOG1992|consen 5 ETLANYLLQTLS--PDPSVRKPAERALRSLEGQ----QNYPLL---LLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAE 75 (960)
T ss_pred HHHHHHHHhcCC--CCCccCchHHHHHHHhccC----CCchHH---HHHHHhccCcChhHHHHHHHHHHHHHHhccCcCC
Confidence 344455555543 6799999998888766543 133333 3333332 267899999999998886 33211
Q ss_pred -----c-cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHH
Q 001749 153 -----F-RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIA 226 (1018)
Q Consensus 153 -----~-~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a 226 (1018)
+ ...-+.+...+...+-+ ....++..--.+++-+..+. ...+|..++|.++.. ++.+|..+..++
T Consensus 76 ~~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~D----FP~kWptLl~dL~~~----ls~~D~~~~~gV 146 (960)
T KOG1992|consen 76 DSPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRD----FPDKWPTLLPDLVAR----LSSGDFNVINGV 146 (960)
T ss_pred CCccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccc----cchhhHHHHHHHHhh----ccccchHHHHHH
Confidence 1 12234555666666555 44566666666666555432 345666677776664 555665555555
Q ss_pred HHHHHHHhcCCccch----------------hHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh--------HH
Q 001749 227 FEIFDELIESPAPLL----------------GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK--------YN 282 (1018)
Q Consensus 227 ~~~l~~l~~~~~~~~----------------~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~--------~~ 282 (1018)
+..-..+.......+ ..-+..++....+.+.+.+.+...-..-++.+.-+++.. |.
T Consensus 147 L~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPE 226 (960)
T KOG1992|consen 147 LVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPE 226 (960)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 544444443221111 111222333333444333333331222223333333321 22
Q ss_pred HhhhcCChHHHHHHHhhhhccCCCCC--CCCCC----cHHHHHHHHHHHHHHHcchh---chHHHHHHHHhhhcCCChhH
Q 001749 283 SLKKHKLVIPILQVMCPLLAESNEAG--EDDDL----APDRAAAEVIDTMALNLAKH---VFPPVFEFASVSCQNASPKY 353 (1018)
Q Consensus 283 ~~~~~~~~~~i~~~l~~~l~~~~~d~--~d~~~----~~~~~a~~~l~~l~~~~~~~---~~~~~~~~l~~~l~~~~~~~ 353 (1018)
++.. .+...+....+++.-..... ++++- ..+...++.+...+..+.+. .++.++...-.++.+.....
T Consensus 227 FFEd--nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~ 304 (960)
T KOG1992|consen 227 FFED--NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDT 304 (960)
T ss_pred HHHh--hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCc
Confidence 2221 23344444455554322111 11221 22334455556666666532 22333322223344433333
Q ss_pred HH-----HHHHHHHHHhhcChHHHHH--hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh-hHHHHHH
Q 001749 354 RE-----AAVTAIGIISEGCAEWMKE--KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCIL 425 (1018)
Q Consensus 354 r~-----aal~~l~~l~~~~~~~~~~--~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~ 425 (1018)
|+ .|+..+..++... .+.. ..+.++..+.....-+|-..|..- .+.++ ..+..+-
T Consensus 305 kyD~Lvs~Al~FLt~V~~r~--~y~~~F~~~~vl~~i~e~VvlpN~~lR~eD---------------eElFED~pleYiR 367 (960)
T KOG1992|consen 305 KYDYLVSKALQFLTSVSRRP--HYAELFEGENVLAQICEKVVLPNLILREED---------------EELFEDNPLEYIR 367 (960)
T ss_pred cHHHHHHHHHHHHHHHHhhh--hhHhhhcchHHHHHHHHhhcccccccchhh---------------HHHhccCHHHHHH
Confidence 33 2333344443321 1111 112334444433333333333221 12222 2444444
Q ss_pred HhccCCChH-HHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC---CHhHHHHHHHHHHHHHHHhhc--------
Q 001749 426 NALEDESDE-VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS---PRNLQETCMSAIGSVAAAAEQ-------- 493 (1018)
Q Consensus 426 ~~l~~~~~~-v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~vr~~al~al~~l~~~~~~-------- 493 (1018)
+.+...+.. =|..||..+..+++.++..+.+.+...++.++.-...+ +++-+..++..+.+++...+.
T Consensus 368 RDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtst 447 (960)
T KOG1992|consen 368 RDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTST 447 (960)
T ss_pred HhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeec
Confidence 455544433 35678999999999997777777777777777755443 566677777777777655321
Q ss_pred ----cchhhH-HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHH
Q 001749 494 ----AFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHG 568 (1018)
Q Consensus 494 ----~~~~~~-~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 568 (1018)
+...|+ ..+.|-|.. -...+..-+|..++..+-..-+.+|+ +++-.+++.+...++.++.-+..++..
T Consensus 448 n~lvdv~~Ff~~~ilp~L~s---~~vn~~pilka~aIKy~~~FR~ql~~----~~lm~~~p~li~~L~a~s~vvhsYAA~ 520 (960)
T KOG1992|consen 448 NELVDVVDFFANQILPDLLS---PNVNEFPILKADAIKYIYTFRNQLGK----EHLMALLPRLIRFLEAESRVVHSYAAI 520 (960)
T ss_pred cccccHHHHHHHHhhHHhcc---CccccccchhhcccceeeeecccCCh----HHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 122333 344444432 01112223566666655555555554 344556666677788888889999999
Q ss_pred HHHHHHHHccc---------CcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeec
Q 001749 569 FFSNIAGVLED---------GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRT 639 (1018)
Q Consensus 569 ~l~~l~~~~~~---------~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t 639 (1018)
++..+-.+.+. +..||+..++..+++.++...+ .+
T Consensus 521 aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~------~E------------------------------ 564 (960)
T KOG1992|consen 521 AIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK------AE------------------------------ 564 (960)
T ss_pred HHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc------cc------------------------------
Confidence 99988877665 4577788888888876654321 00
Q ss_pred ccchhHHHHHHHHHHHHHHccccCcc---------------------------hHHHHHHHhh---cCCChhHHHHHHHH
Q 001749 640 GVLDEKAAATQALGLFALHTKSSYAP---------------------------FLEESLKILS---HNEGPAKAREILDT 689 (1018)
Q Consensus 640 ~~~~~k~~a~~~l~~~~~~~~~~~~p---------------------------~~~~~~~~l~---~~~~~~~~~~~~~~ 689 (1018)
-+-.++++-.+.........| |+-+.+..+. ...++..+..+-..
T Consensus 565 -----neylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~a 639 (960)
T KOG1992|consen 565 -----NEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEA 639 (960)
T ss_pred -----cHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 111222333333333333333 3333222221 12344455556666
Q ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH--HHHhhhhhhcCCCCCCCCCCcCCchhhHH
Q 001749 690 VMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATL--LLLREESTCQQPDNDSDIEDDDDTAHDEV 767 (1018)
Q Consensus 690 ~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1018)
++|.+...+. |+=.|....++.-++-++...+. .+.+.+..+++.++ .+++++ +
T Consensus 640 L~p~fq~Il~-eDI~EfiPYvfQlla~lve~~~~-~ip~~~~~l~~~lLsp~lW~r~-------g--------------- 695 (960)
T KOG1992|consen 640 LFPVFQTILS-EDIQEFIPYVFQLLAVLVEHSSG-TIPDSYSPLFPPLLSPNLWKRS-------G--------------- 695 (960)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHhcCHHHHhhc-------C---------------
Confidence 6776666665 33345556667777777776665 23333333443332 122221 0
Q ss_pred HHHHHHhHHHHHHHHhCCChH--HHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcc-hHhhHHhhHHHHHHhc
Q 001749 768 IMDAVSDLLPAFAKSMGPHFA--PIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP-IAAYVDRVMPLVLKEL 844 (1018)
Q Consensus 768 ~~~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~l 844 (1018)
-+-++..++.++.+.....+. .....++..+-+++.+... -..++..+..++.+.... ..||+.++...+.+.+
T Consensus 696 NipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~---Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rl 772 (960)
T KOG1992|consen 696 NIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAN---DHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRL 772 (960)
T ss_pred CcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCccc---chhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHH
Confidence 112444566666665333333 3345566666666654322 356788999999988765 6789999999999999
Q ss_pred CCC-ChH-HHHHHHHHHHHHHhhcCcchhhHHHHHH
Q 001749 845 ASP-DAM-NRRNAAFCVGELCKNGGESALKYYGDIL 878 (1018)
Q Consensus 845 ~~~-~~~-vr~~a~~~lg~l~~~~~~~~~~~~~~il 878 (1018)
+.+ .++ ++.-.++..-..+++++....+.+..+-
T Consensus 773 qnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ 808 (960)
T KOG1992|consen 773 QNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQ 808 (960)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 855 333 4444445444445555554444444433
No 44
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.38 E-value=9.2e-12 Score=121.41 Aligned_cols=355 Identities=15% Similarity=0.165 Sum_probs=233.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhh-ccccccH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhH
Q 001749 120 LPFLFQFSQSEQEEHREVALILFSSLTETIG-QTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (1018)
Q Consensus 120 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~ 197 (1018)
+|.+.+.+.|.+-+....|..-|..+...-. +-+.+.+ ..++|-|.+.+...+..-.+..|.+++.++.+-......+
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 4888888888888888888888888774322 2223333 3456788888844355567889999999998765432222
Q ss_pred HHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHH--HHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 001749 198 VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKS--IVHFSLEVSSSHNLEPNTRHQAIQIISW 275 (1018)
Q Consensus 198 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--li~~l~~~~~~~~~~~~~r~~a~~~l~~ 275 (1018)
..-.+.+|.+++. +.+++.+++..+.+.|+.++...+.. ..++-+ .++.++.++.+...+-..-+.
T Consensus 153 Vvd~~AVPlfiql----L~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~ismlRn------- 220 (526)
T COG5064 153 VVDAGAVPLFIQL----LSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHISMLRN------- 220 (526)
T ss_pred EEeCCchHHHHHH----HcCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHHHHHH-------
Confidence 2235678888886 56778899999999999998754321 111110 111111222111111122222
Q ss_pred HHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhcCCCh
Q 001749 276 LAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQNASP 351 (1018)
Q Consensus 276 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~~~~ 351 (1018)
+...|+.++.... ...+...+|.+.+++.+.+.
T Consensus 221 -------------------------------------------~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~ 257 (526)
T COG5064 221 -------------------------------------------ATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDP 257 (526)
T ss_pred -------------------------------------------hHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCH
Confidence 3334444443211 23445566777777888889
Q ss_pred hHHHHHHHHHHHHhhcChHHHHHhHHH-HHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhcc
Q 001749 352 KYREAAVTAIGIISEGCAEWMKEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALE 429 (1018)
Q Consensus 352 ~~r~aal~~l~~l~~~~~~~~~~~l~~-l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~ 429 (1018)
.+-.-|+++++.++.+..+.+...++. +.+-++..|.+++..|+.-|++.+|.+...-....+-.+ -..++.+...|.
T Consensus 258 evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs 337 (526)
T COG5064 258 EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS 337 (526)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc
Confidence 999999999999999987766555543 344688888999999999999999999865322111111 355677777788
Q ss_pred CCChHHHHHHHHHHHHHHhhhccccccchH-HHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh--ccchhhH--HHHHH
Q 001749 430 DESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYA--ERVLE 504 (1018)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~--~~~~~~~--~~i~~ 504 (1018)
++...+|..+||++.++.....+.++..++ .++|.|+.++...+.++|..|+.+++......- .+...|+ ..++.
T Consensus 338 ~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~Ik 417 (526)
T COG5064 338 SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIK 417 (526)
T ss_pred ChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchh
Confidence 887889999999999998776666666565 588999999999999999999999998765543 3445565 33677
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHHHHH
Q 001749 505 LLKIFMVLTNDEDLRSRARATELLGLVA 532 (1018)
Q Consensus 505 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 532 (1018)
.|..++...+..-.. .+++++..+.
T Consensus 418 pLc~~L~~~dNkiie---v~LD~~eniL 442 (526)
T COG5064 418 PLCDLLDVVDNKIIE---VALDAIENIL 442 (526)
T ss_pred HHHHHHhccCccchh---hhHHHHHHHH
Confidence 777777654332222 3455555543
No 45
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.4e-06 Score=96.27 Aligned_cols=476 Identities=17% Similarity=0.169 Sum_probs=257.9
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhcCHH
Q 001749 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPE 412 (1018)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~ 412 (1018)
.+..++..+...+++.+..+|..|...+|.+....+..+.. +++..++..+.- +.+..=..||-+++.++..- -.
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad---~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lL 413 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD---QVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LL 413 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH---HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Cc
Confidence 34456666677789999999999999999999988855544 333433333321 12333448899999998642 11
Q ss_pred HHHhhhhHHHHHHHhccCC--------ChHHHHHHHHHHHHHHhhh-ccccccchHHHHHHHH-HhhcCCCHhHHHHHHH
Q 001749 413 IVSHYESVLPCILNALEDE--------SDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLL-AALENSPRNLQETCMS 482 (1018)
Q Consensus 413 ~~~~~~~~l~~l~~~l~~~--------~~~v~~~a~~al~~l~~~~-~~~~~~~~~~l~~~l~-~~l~~~~~~vr~~al~ 482 (1018)
....++.++|.+++++.-. ...||.+||.++-.|.+.. ++.+.|++..+...|+ ..+-+++.+.|..|..
T Consensus 414 lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 414 LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 1235678889888888632 2459999999999999988 6678899988877776 4566778899998887
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhc-cCCCChh
Q 001749 483 AIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISG-FGLEFSE 561 (1018)
Q Consensus 483 al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~-l~~~~~~ 561 (1018)
|+--.+..-+.. |+--.++. ..+.-....|. +|...++..+ ..|..|..++++.++.. +..-+..
T Consensus 494 AlqE~VGR~~n~--p~Gi~Lis-------~~dy~sV~~rs---Ncy~~l~~~i--a~~~~y~~~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 494 ALQENVGRQGNF--PHGISLIS-------TIDYFSVTNRS---NCYLDLCVSI--AEFSGYREPVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HHHHHhccCCCC--CCchhhhh-------hcchhhhhhhh---hHHHHHhHHH--HhhhhHHHHHHHHHHhcccccccHH
Confidence 776544332211 11111111 11101111122 4445555544 35777888999887764 4455788
Q ss_pred HHHHHHHHHHHHHHHcccCcc-cchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecc
Q 001749 562 LREYTHGFFSNIAGVLEDGFA-QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTG 640 (1018)
Q Consensus 562 ~~~~~~~~l~~l~~~~~~~~~-~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~ 640 (1018)
+|+.+..++..+....++.+. .|++.+++..+ ++
T Consensus 560 irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l---------------------------------------------s~ 594 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKYLADYVLPPLLDSTL---------------------------------------------SK 594 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc---------------------------------------------CC
Confidence 999999999999988887766 44544444332 11
Q ss_pred cchhHHHHHHHHHHHHHHccccC--cchHHH-HHHHhhcCCChhHHHHHHHHHHHHHHHH-HhhCCcHHHHHHHHHHHHH
Q 001749 641 VLDEKAAATQALGLFALHTKSSY--APFLEE-SLKILSHNEGPAKAREILDTVMNIFIRT-MTEDDDKDVVAQACTSIVE 716 (1018)
Q Consensus 641 ~~~~k~~a~~~l~~~~~~~~~~~--~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~e~~~~~~~~~~~~l~~ 716 (1018)
....+.+...+.+.++..+...- .+++.+ .+..+ ..+++.+... +..... ++.......+.+
T Consensus 595 ~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l-------------~~ii~~~~~~~~~rg~~-~lmr~~~~~~Ie 660 (1133)
T KOG1943|consen 595 DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGL-------------LSIIPPICDRYFYRGQG-TLMRQATLKFIE 660 (1133)
T ss_pred ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhh-------------hhhccHHHHHHhccchH-HHHHHHHHHHHH
Confidence 22346777777777766554322 222222 11111 0011111111 100000 222233333333
Q ss_pred HHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHH-HHH
Q 001749 717 IINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFA-KLF 795 (1018)
Q Consensus 717 ~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~ 795 (1018)
.++..........+.+ ....++....... +.-+..+...++++...+.+ ++. ... .++
T Consensus 661 ~~s~s~~~~~~~~v~e---~~~~ll~~~l~~~-------------n~i~~~av~av~~l~s~y~~--~d~---~~~~~li 719 (1133)
T KOG1943|consen 661 QLSLSKDRLFQDFVIE---NWQMLLAQNLTLP-------------NQIRDAAVSAVSDLVSTYVK--ADE---GEEAPLI 719 (1133)
T ss_pred HhhhccchhHHHHHHH---HHHHHHHHhhcch-------------HHHHHHHHHHHHHHHHHHHh--cCc---hhhhHHH
Confidence 3333332211111111 1111111100000 01112334444454444433 221 111 344
Q ss_pred HHHHHhhccCCCccchhhhhHhHHHHHhhcCcchH-hhHHhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhcCc-----
Q 001749 796 DPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIA-AYVDRVMPLVLKELASP-DAMNRRNAAFCVGELCKNGGE----- 868 (1018)
Q Consensus 796 ~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~-~~~vr~~a~~~lg~l~~~~~~----- 868 (1018)
..++..+++......|......++.+- +..+. ++-+.+...++...... .++.|++.+.++...+...+.
T Consensus 720 ~~~ls~~~~~~~~~~r~g~~lal~~lp---~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~ 796 (1133)
T KOG1943|consen 720 TRYLSRLTKCSEERIRRGLILALGVLP---SELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSE 796 (1133)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHccCc---HHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 445555554433233333222222111 11122 33444555555555433 889999999999999887662
Q ss_pred chhhHHHHHHHhhhhccCCC--CCCchhHhHHHHHHHHHHHhCC
Q 001749 869 SALKYYGDILRGLYPLFGDS--EPDDAVRDNAAGAVARMIMVNP 910 (1018)
Q Consensus 869 ~~~~~~~~il~~L~~~l~~~--~~~~~~~~na~~al~~l~~~~~ 910 (1018)
.+..+...+++++-....++ +--.-+|+.|+.++..+....+
T Consensus 797 ~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 797 SIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred cHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 24455556666655544332 2234689999999988876653
No 46
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.34 E-value=6e-09 Score=118.64 Aligned_cols=536 Identities=17% Similarity=0.137 Sum_probs=322.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcC---CCcHHHHHHHH---hcCCChhHHHHHHHHHHHhhhhhhccCCHHHHH
Q 001749 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD---PQVVPALVQHL---RTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (1018)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~---p~~~~~l~~~l---~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~ 77 (1018)
++.+.++.....+.+....+..++..+... |++...++..+ .......+|+-+.-.++..+..+ +.+...
T Consensus 121 ~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~----~~~~~~ 196 (759)
T KOG0211|consen 121 ELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGL----PKEKLR 196 (759)
T ss_pred hhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----ChHHHH
Confidence 455566666655567777777888766543 66554444333 33445678999888888776543 322222
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccH
Q 001749 78 LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (1018)
Q Consensus 78 ~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~ 157 (1018)
.....++..+....-..-|..+|.+.+..+....++..-.++.+...+..++..+..|..+..-++.+....+. ....
T Consensus 197 ~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~ 274 (759)
T KOG0211|consen 197 EHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVK 274 (759)
T ss_pred HHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHH
Confidence 22223333333221122455566666666544322234477888889999999999999999999998887775 3345
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001749 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1018)
Q Consensus 158 ~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (1018)
..+++.+.+...| ....||.+|+.++..+..+..... .....+.+.+++ ..+++++.++.........+....
T Consensus 275 s~v~~~~~~L~~D-dqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~----~~~d~~~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 275 SEVLPTLIQLLRD-DQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQ----AVEDGSWRVSYMVADKFSELSSAV 347 (759)
T ss_pred hhccHHHhhhhhc-chhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHH----HhcChhHHHHHHHhhhhhhHHHHh
Confidence 6677888888888 778899999999999999886542 223334444444 567777777766666655555432
Q ss_pred ccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHH
Q 001749 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR 317 (1018)
Q Consensus 238 ~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~ 317 (1018)
.+ ...-+...+.....++. ...+.|.....-...+..+........-....+++.+.....+. ...++.
T Consensus 348 ~~--~~~~~~~~~~~~~l~~~--~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~-------~~~vr~ 416 (759)
T KOG0211|consen 348 GP--SATRTQLVPPVSNLLKD--EEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN-------ALHVRS 416 (759)
T ss_pred cc--ccCcccchhhHHHHhcc--hhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc-------cchHHH
Confidence 22 11111122222233332 23344444332222222221100000001122233332222222 123444
Q ss_pred HHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcC-hHHHHHhHHHHHHHHHhhcCCCChhHH
Q 001749 318 AAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVR 395 (1018)
Q Consensus 318 ~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~l~~~l~~~l~d~~~~Vr 395 (1018)
+....+..+....| ...++.++|.....+++....+|...+..+..+-... ...+.......+|.+...-.|.++++|
T Consensus 417 a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr 496 (759)
T KOG0211|consen 417 ALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVR 496 (759)
T ss_pred HHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHH
Confidence 44444444444555 5566777888888889999999988886664433321 122333456778888888888899999
Q ss_pred HHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHh
Q 001749 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRN 475 (1018)
Q Consensus 396 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 475 (1018)
.+..+.+-.++...+..+. -+..-+.+...+.|....+|.+|...+..++..+|. .=+...+++.++....+++..
T Consensus 497 ~ail~~ip~la~q~~~~~~--~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~ 572 (759)
T KOG0211|consen 497 LAILEYIPQLALQLGVEFF--DEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYL 572 (759)
T ss_pred HHHHHHHHHHHHhhhhHHh--hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccc
Confidence 9999999998877663221 122334444556666678999999999999999983 234557788888887777899
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhcc
Q 001749 476 LQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF 555 (1018)
Q Consensus 476 vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l 555 (1018)
+|...+.++..++...|..+ +-..++|.+..+... +...+|-.+...+..+...+.......++.++.+.+.
T Consensus 573 ~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D---~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~--- 644 (759)
T KOG0211|consen 573 VRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKD---PVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLS--- 644 (759)
T ss_pred hhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccC---CchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhc---
Confidence 99999999999999988754 234566666654432 3334666666666666554443333333334433322
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 001749 556 GLEFSELREYTHGFFSNIAG 575 (1018)
Q Consensus 556 ~~~~~~~~~~~~~~l~~l~~ 575 (1018)
++.+.++|-.+..+++.+..
T Consensus 645 ~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred cCcccchhHHHHHHHHHHHH
Confidence 24466777777777766654
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.34 E-value=1.3e-08 Score=115.07 Aligned_cols=392 Identities=17% Similarity=0.225 Sum_probs=257.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccc-cHHHHH
Q 001749 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP-HFADMQ 161 (1018)
Q Consensus 83 Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~ 161 (1018)
++.+|.+ .+...-..+|.++..+.....+...-+.+.+.+...+.++++.+|..++..++.+.+........ .-+.++
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 6677764 45555678888888887765554456888899999999999999999999988887654332111 125678
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001749 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI-PSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1018)
Q Consensus 162 ~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (1018)
+.+..++.+ ++..|...|++++..+...... ...++ +..+..+...+...++.++..+++++..++...+..
T Consensus 122 ~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~------~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 122 PLIIQCLRD-PDLSVAKAAIKALKKLASHPEG------LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHcC-CcHHHHHHHHHHHHHHhCCchh------HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 899999999 9999999999999999976532 11121 112444445566557788999999999999887776
Q ss_pred hhHhHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChH--HHHHHHhhhhccCCCCCCCCCCcHHH
Q 001749 241 LGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVI--PILQVMCPLLAESNEAGEDDDLAPDR 317 (1018)
Q Consensus 241 ~~~~~~-~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~d~~d~~~~~~~ 317 (1018)
+..... .+++.++.-+.+ .|.-++..+++++..+++.... .. |+. .+++.+..++.+.++|. ......-
T Consensus 195 ~~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~~~g-~~---yL~~~gi~~~L~~~l~~~~~dp--~~~~~~l 266 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAETPHG-LQ---YLEQQGIFDKLSNLLQDSEEDP--RLSSLLL 266 (503)
T ss_pred HHHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcChhH-HH---HHHhCCHHHHHHHHHhccccCC--cccchhh
Confidence 644332 366666666655 3667899999999999983221 11 221 35666677776654432 1112221
Q ss_pred H-HHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh--HHH----HHhHHHHHHHHHhhc
Q 001749 318 A-AAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--EWM----KEKLESVLHIVLGAL 387 (1018)
Q Consensus 318 ~-a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~----~~~l~~l~~~l~~~l 387 (1018)
. .....+.++..-+ ...+|.++..+...+.+.+...+.+|+.++|.++.... ..+ .+.++.++..+....
T Consensus 267 ~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 1 2255556665433 23457788888888899999999999999999986532 122 233566777777777
Q ss_pred CCCChhHHHHHHHHHHHhHhhcCH----HH---H-Hhhh----hHHH-HHHHhccCCChHHHHHHHHHHHHHHhhh-ccc
Q 001749 388 RDPEQFVRGAASFALGQFAEYLQP----EI---V-SHYE----SVLP-CILNALEDESDEVKEKSYYALAAFCEDM-GEE 453 (1018)
Q Consensus 388 ~d~~~~Vr~~a~~~l~~l~~~~~~----~~---~-~~~~----~~l~-~l~~~l~~~~~~v~~~a~~al~~l~~~~-~~~ 453 (1018)
......+|..++.+++.+.....+ ++ . ..+. .-.. .++..++.|-+.+|.++...+..++..- +-.
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~ 426 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQR 426 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 788888999999999999654432 11 1 1111 1122 6677778888899999999999988764 211
Q ss_pred cccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001749 454 ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1018)
Q Consensus 454 ~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~ 490 (1018)
..--.+.+++.++.--...+...++.=...+..++..
T Consensus 427 ~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 427 EICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1112234445444333334555555555555555533
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3e-08 Score=108.15 Aligned_cols=463 Identities=13% Similarity=0.118 Sum_probs=272.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHH
Q 001749 84 IESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQAL 163 (1018)
Q Consensus 84 l~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~ 163 (1018)
.+.|.+-.+...+.+.-++++.|++.. ...+++|.+..+..+.+.+.+.....-|-..+|.-++.-.- -+..
T Consensus 41 ~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL----SInt 112 (968)
T KOG1060|consen 41 KQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL----SINT 112 (968)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----eHHH
Confidence 344445466778888888888888753 46789999999999999988887766666666544432111 1467
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhH
Q 001749 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (1018)
Q Consensus 164 l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 243 (1018)
|.+.|.| +++.+|..|+++++.+-- ..+.|.++-.+.++..|..+-+|+.|..++-++....+..-.
T Consensus 113 fQk~L~D-pN~LiRasALRvlSsIRv-----------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~- 179 (968)
T KOG1060|consen 113 FQKALKD-PNQLIRASALRVLSSIRV-----------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD- 179 (968)
T ss_pred HHhhhcC-CcHHHHHHHHHHHHhcch-----------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH-
Confidence 7889999 999999999998866532 237788888888999898999999999999998887766444
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhh--------cC----ChHH-HHHHHhhh----hccCCC
Q 001749 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK--------HK----LVIP-ILQVMCPL----LAESNE 306 (1018)
Q Consensus 244 ~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~--------~~----~~~~-i~~~l~~~----l~~~~~ 306 (1018)
.+..++..++ .+ .++-+--.|+-.+..++-.+-..+.+ .+ +-.. ++.++... +.+..-
T Consensus 180 qL~e~I~~LL---aD--~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 180 QLEEVIKKLL---AD--RSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTV 254 (968)
T ss_pred HHHHHHHHHh---cC--CCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccc
Confidence 4444444433 32 34444444444444333221111111 00 0000 11111111 111100
Q ss_pred CCCCCCCcHHHHHHHHHHHHHH-Hcc---hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHH
Q 001749 307 AGEDDDLAPDRAAAEVIDTMAL-NLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHI 382 (1018)
Q Consensus 307 d~~d~~~~~~~~a~~~l~~l~~-~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~ 382 (1018)
.+++-+.+.+.+ ..-+.... ..| +.-+..+++....++.+.++.+--|++.++-.++... ....++..
T Consensus 255 ~~~~~e~n~~~~--~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~ka 326 (968)
T KOG1060|consen 255 VDSSLEDNGRSC--NLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKA 326 (968)
T ss_pred cccccccCcccc--cccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHH
Confidence 000000000000 00000000 011 2223456666677788888877777777777666432 34456667
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHh------------------------------hhhHHHHHHHhccCCC
Q 001749 383 VLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH------------------------------YESVLPCILNALEDES 432 (1018)
Q Consensus 383 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~------------------------------~~~~l~~l~~~l~~~~ 432 (1018)
+++.|.. ++.||+..+..+..++..-+..+.+| ...+++.+...+.+.+
T Consensus 327 LvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d 405 (968)
T KOG1060|consen 327 LVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSD 405 (968)
T ss_pred HHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc
Confidence 7776654 67788888888888886554333332 2344555555556665
Q ss_pred hHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhc
Q 001749 433 DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (1018)
Q Consensus 433 ~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 512 (1018)
.++...+..+++.++...+ ..-+..+..|+.++.+.+..|-..+...|-.+...-+..-..++.++...+..+.
T Consensus 406 ~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~-- 479 (968)
T KOG1060|consen 406 RSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTIL-- 479 (968)
T ss_pred hhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhh--
Confidence 5677777788887766543 3456788888888888888888888888888877766443333333333321111
Q ss_pred cCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHH
Q 001749 513 TNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLA 592 (1018)
Q Consensus 513 ~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l 592 (1018)
...-|+..+..+|..+..+ ...++.++..+.+.+.++.++++-.++..-..+--.-.++ ...+..+.
T Consensus 480 ----vp~ARA~IiWLige~~e~v-----pri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~----~kll~~Yv 546 (968)
T KOG1060|consen 480 ----VPAARAGIIWLIGEYCEIV-----PRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ----TKLLVQYV 546 (968)
T ss_pred ----hhhhhceeeeeehhhhhhc-----chhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh----HHHHHHHH
Confidence 1123444456666655433 3356778888888888888888887776555443222222 34555666
Q ss_pred HhhccCCC
Q 001749 593 FSSCNLDD 600 (1018)
Q Consensus 593 l~~~~~~~ 600 (1018)
++...++.
T Consensus 547 ~~L~~yD~ 554 (968)
T KOG1060|consen 547 FELARYDL 554 (968)
T ss_pred HHHhccCC
Confidence 66665554
No 49
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.30 E-value=8.9e-09 Score=117.26 Aligned_cols=531 Identities=14% Similarity=0.100 Sum_probs=338.9
Q ss_pred CCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCC
Q 001749 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQD 170 (1018)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 170 (1018)
.+-.-|.....-+..++...++...-.+++|++.+.. ..+......+..-++.+..+.+. ..+...+.+.+.....+
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l~~~ 170 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELLATV 170 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhhhHH
Confidence 3455666666777777765544334577899999999 55556777777777777766442 23344455666666666
Q ss_pred CCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc-cchhHhHHHHH
Q 001749 171 ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLGDSVKSIV 249 (1018)
Q Consensus 171 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~li 249 (1018)
....||..++..+...+...+... ....++|.+... ...+-...+..++..+...+...+ ..++..+ .
T Consensus 171 -eet~vr~k~ve~l~~v~~~~~~~~---~~~~lv~l~~~l----~~~d~~~sr~sacglf~~~~~~~~~~~vk~el---r 239 (759)
T KOG0211|consen 171 -EETGVREKAVESLLKVAVGLPKEK---LREHLVPLLKRL----ATGDWFQSRLSACGLFGKLYVSLPDDAVKREL---R 239 (759)
T ss_pred -HHHHHHHHHHHHHHHHHHhcChHH---HHHHHHHHHHHc----cchhhhhcchhhhhhhHHhccCCChHHHHHHH---H
Confidence 677899999999999887775432 133344443332 222222345667777777665544 4444433 3
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 001749 250 HFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN 329 (1018)
Q Consensus 250 ~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~ 329 (1018)
+...+++. +..+.+|..+..-+..++...+....+. .+++....+.. |+..++|..|...+..+...
T Consensus 240 ~~~~~lc~--d~~~~Vr~~~a~~l~~~a~~~~~~~~~s----~v~~~~~~L~~-------DdqdsVr~~a~~~~~~l~~l 306 (759)
T KOG0211|consen 240 PIVQSLCQ--DDTPMVRRAVASNLGNIAKVLESEIVKS----EVLPTLIQLLR-------DDQDSVREAAVESLVSLLDL 306 (759)
T ss_pred HHHHhhcc--ccchhhHHHHHhhhHHHHHHHHHHHHHh----hccHHHhhhhh-------cchhhHHHHHHHHHHHHHHh
Confidence 33444554 3477888888777666665444322111 11222222222 33358999999999988887
Q ss_pred cc-h-hchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001749 330 LA-K-HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1018)
Q Consensus 330 ~~-~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 407 (1018)
+. . +....+.+.+.+..++.+|++|+.....+..+...... ...-...++.....++|....+|.++..-...++.
T Consensus 307 ~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~ 384 (759)
T KOG0211|consen 307 LDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLAC 384 (759)
T ss_pred cCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhh
Confidence 77 4 55566677777778999999999887776666654333 11224567788888999999999999999888888
Q ss_pred hcCHHHHH--hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHH
Q 001749 408 YLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (1018)
Q Consensus 408 ~~~~~~~~--~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~ 485 (1018)
........ ....++|.+-....+.+..|+...+.....+...++.. .-...+.+.+...+++..+.||...+..+.
T Consensus 385 ~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~ti~~llp~~~~~l~de~~~V~lnli~~ls 462 (759)
T KOG0211|consen 385 YLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--RTISELLPLLIGNLKDEDPIVRLNLIDKLS 462 (759)
T ss_pred hcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--cCccccChhhhhhcchhhHHHHHhhHHHHH
Confidence 76522111 23566899888889999999988777776666555421 223445666777788888999999988775
Q ss_pred HHHHHhh-ccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHH
Q 001749 486 SVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELRE 564 (1018)
Q Consensus 486 ~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 564 (1018)
.+-...+ .+...+.+..+|.+..+... ..++.|...++.+..++...|.+.|.+...++. ..-+.+....+|+
T Consensus 463 ~~~~v~~v~g~~~~s~slLp~i~el~~d---~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~---~~~l~d~v~~Ir~ 536 (759)
T KOG0211|consen 463 LLEEVNDVIGISTVSNSLLPAIVELAED---LLWRVRLAILEYIPQLALQLGVEFFDEKLAELL---RTWLPDHVYSIRE 536 (759)
T ss_pred HHHhccCcccchhhhhhhhhhhhhhccc---hhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH---HhhhhhhHHHHHH
Confidence 5444433 23445556677766554332 357788888899999888887545544432222 2223344568999
Q ss_pred HHHHHHHHHHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchh
Q 001749 565 YTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDE 644 (1018)
Q Consensus 565 ~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~ 644 (1018)
.+...+..++..+|..+ +...++|.++.....+ ....
T Consensus 537 ~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~-----------------------------------------~y~~ 573 (759)
T KOG0211|consen 537 AAARNLPALVETFGSEW--ARLEEIPKLLAMDLQD-----------------------------------------NYLV 573 (759)
T ss_pred HHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCc-----------------------------------------ccch
Confidence 99999999999999433 3456677776543211 1123
Q ss_pred HHHHHHHHHHHHHHccccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCc
Q 001749 645 KAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYM 724 (1018)
Q Consensus 645 k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~ 724 (1018)
|...+.++..++..+|..+. ...++|.+.. +..|+.++|+..++..+..+++.+...
T Consensus 574 R~t~l~si~~la~v~g~ei~----------------------~~~Llp~~~~-l~~D~vanVR~nvak~L~~i~~~L~~~ 630 (759)
T KOG0211|consen 574 RMTTLFSIHELAEVLGQEIT----------------------CEDLLPVFLD-LVKDPVANVRINVAKHLPKILKLLDES 630 (759)
T ss_pred hhHHHHHHHHHHHHhccHHH----------------------HHHHhHHHHH-hccCCchhhhhhHHHHHHHHHhhcchH
Confidence 77777888888877764321 1123333333 344788888888887777777666543
No 50
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.30 E-value=3.6e-06 Score=94.11 Aligned_cols=294 Identities=17% Similarity=0.178 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchh
Q 001749 685 EILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAH 764 (1018)
Q Consensus 685 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 764 (1018)
++....+...+..+..+..+-+...++.++.... |...+.+..+.+++.+.++..+..
T Consensus 486 ~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s------------------- 543 (1005)
T KOG2274|consen 486 QLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSS------------------- 543 (1005)
T ss_pred hHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHccccc-------------------
Confidence 3344455566666655655556666666555443 555667788888888877654421
Q ss_pred hHHHHHHHHhHHHHHHHHhCCChHHHHH-HHHHHHHHhh-ccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHH
Q 001749 765 DEVIMDAVSDLLPAFAKSMGPHFAPIFA-KLFDPLMKFA-KSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLK 842 (1018)
Q Consensus 765 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l-~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 842 (1018)
..++..+.+.+..+++. .+.|..... .++|.++... ..++.+.+-..+--++-+++.. ..+..|+...++|.+++
T Consensus 544 -~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslis 620 (1005)
T KOG2274|consen 544 -DEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLIS 620 (1005)
T ss_pred -HHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHH
Confidence 12334444445555543 223333222 3666555532 2233333345555666666653 34567788889999998
Q ss_pred hcCCCC----hHHHHHHHHHHHHHHhhcCcch-hhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCC----
Q 001749 843 ELASPD----AMNRRNAAFCVGELCKNGGESA-LKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI---- 913 (1018)
Q Consensus 843 ~l~~~~----~~vr~~a~~~lg~l~~~~~~~~-~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~---- 913 (1018)
-+..++ +....-|+..|..+++.+++.+ ...+...++++.++.-.+ +|.+...|+-.|+.-++...++.+
T Consensus 621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHs-dD~~tlQ~~~EcLra~Is~~~eq~~t~~ 699 (1005)
T KOG2274|consen 621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHS-DDHETLQNATECLRALISVTLEQLLTWH 699 (1005)
T ss_pred HHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeec-CChHHHHhHHHHHHHHHhcCHHHHHhhc
Confidence 887554 7778888898998999888754 344556667666655333 356778888888888877633221
Q ss_pred --C---hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 001749 914 --P---LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHL 988 (1018)
Q Consensus 914 --~---~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~ 988 (1018)
| +--++..+-..|....++-.+..+.+.+..|+.+.+..+.+++.+|++++..-+.... .-.+-+.++-++.++
T Consensus 700 ~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae-~lsviQsLi~VfahL 778 (1005)
T KOG2274|consen 700 DEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAE-TLSVIQSLIMVFAHL 778 (1005)
T ss_pred cCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 1 2223333333343445556666888999999998888899999999999988876431 112333344444455
Q ss_pred HHHhHhhHHHHHhcCCH
Q 001749 989 ISLYGQQMQPLLSNLSP 1005 (1018)
Q Consensus 989 ~~~~~~~~~~~~~~l~~ 1005 (1018)
.-..++++-.++.++|.
T Consensus 779 ~~t~~~~~l~FL~Slp~ 795 (1005)
T KOG2274|consen 779 VHTDLDQLLNFLSSLPG 795 (1005)
T ss_pred hhCCHHHHHHHHHhCCC
Confidence 55556778888888654
No 51
>PRK09687 putative lyase; Provisional
Probab=99.27 E-value=1.4e-09 Score=111.94 Aligned_cols=252 Identities=17% Similarity=0.242 Sum_probs=155.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccch
Q 001749 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL 241 (1018)
Q Consensus 162 ~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 241 (1018)
+.+...|.| ++..||..|+++|..+=. ...++.+.. .+.++++.++..+.+.|.++......
T Consensus 26 ~~L~~~L~d-~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~----ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 26 DELFRLLDD-HNSLKRISSIRVLQLRGG-----------QDVFRLAIE----LCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHhcCc-----------chHHHHHHH----HHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 455566777 889999999988764421 113333333 45678889999999999887642211
Q ss_pred hHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHH
Q 001749 242 GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAE 321 (1018)
Q Consensus 242 ~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~ 321 (1018)
....++.+...+. .+.++.||..++..+..+....
T Consensus 88 ---~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~~----------------------------------------- 122 (280)
T PRK09687 88 ---QDNVFNILNNLAL-EDKSACVRASAINATGHRCKKN----------------------------------------- 122 (280)
T ss_pred ---hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhcccccc-----------------------------------------
Confidence 1122222222212 2345667777666655443110
Q ss_pred HHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHH
Q 001749 322 VIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFA 401 (1018)
Q Consensus 322 ~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~ 401 (1018)
....+.+++.+...+.+++|.+|.++..+|+.+.. +..++.++..+.|+++.||..|.++
T Consensus 123 ----------~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~~~~VR~~A~~a 182 (280)
T PRK09687 123 ----------PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDPNGDVRNWAAFA 182 (280)
T ss_pred ----------cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00122334444555777888888888888876542 2466777888888888888888888
Q ss_pred HHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHH
Q 001749 402 LGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCM 481 (1018)
Q Consensus 402 l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al 481 (1018)
||.+... -+.+.+.|+..+.|+++.||..|..+|+.+- + +..++.|++.+++++ ++..++
T Consensus 183 Lg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~------~~av~~Li~~L~~~~--~~~~a~ 242 (280)
T PRK09687 183 LNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D------KRVLSVLIKELKKGT--VGDLII 242 (280)
T ss_pred HhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C------hhHHHHHHHHHcCCc--hHHHHH
Confidence 8887221 2256777778888888888888888887631 1 256677777777654 666777
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHH
Q 001749 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELL 528 (1018)
Q Consensus 482 ~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l 528 (1018)
.++|.+.. +..+|.|.+++.... +..++.++++.+
T Consensus 243 ~ALg~ig~----------~~a~p~L~~l~~~~~--d~~v~~~a~~a~ 277 (280)
T PRK09687 243 EAAGELGD----------KTLLPVLDTLLYKFD--DNEIITKAIDKL 277 (280)
T ss_pred HHHHhcCC----------HhHHHHHHHHHhhCC--ChhHHHHHHHHH
Confidence 77776643 245667777665332 334455555544
No 52
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=9.1e-06 Score=89.52 Aligned_cols=495 Identities=15% Similarity=0.161 Sum_probs=291.7
Q ss_pred HHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC-----C-HhHHHHHHHHHHHHHHHhhc--cchhhH-HHHHH
Q 001749 434 EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-----P-RNLQETCMSAIGSVAAAAEQ--AFIPYA-ERVLE 504 (1018)
Q Consensus 434 ~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-----~-~~vr~~al~al~~l~~~~~~--~~~~~~-~~i~~ 504 (1018)
.+|-.|-.....+.+..++-+.|++-.++..-.++..-+ + .-.+..+..++|..+....+ +|...+ ..++|
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp 491 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP 491 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence 355555566677777777777777776666655554211 1 23456667777777666654 455555 33445
Q ss_pred HHHHHHhccCchhhh-hHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHc---cc
Q 001749 505 LLKIFMVLTNDEDLR-SRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE-FSELREYTHGFFSNIAGVL---ED 579 (1018)
Q Consensus 505 ~l~~~l~~~~~~~~~-~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~l~~l~~~~---~~ 579 (1018)
-+. .. ....+ +|.+.+-.+|..... +.-...-+-+...+++.+++. |-.+|-.+..++..+..-. .+
T Consensus 492 El~----~~-~~~~RiiRRRVa~ilg~Wvsv---q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 492 ELA----ND-HGNSRIIRRRVAWILGQWVSV---QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred Hhh----hc-ccchhHHHHHHHHHHhhhhhe---echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 444 22 22333 577777777766531 111122234445556666644 5667777777777766643 36
Q ss_pred CcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHHc
Q 001749 580 GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT 659 (1018)
Q Consensus 580 ~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~~ 659 (1018)
.|.||++.+...+++.+..-. ..+-|-..+..++.++...
T Consensus 564 sFlp~lenlf~~lfkll~~~~----------------------------------------e~Dtk~~VL~~ls~lI~r~ 603 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVE----------------------------------------ECDTKTSVLNLLSTLIERV 603 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHh----------------------------------------hhhhHHHHHHHHHHHHHHH
Confidence 689999998888887764210 1123888999999999999
Q ss_pred cccCcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 001749 660 KSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLL 739 (1018)
Q Consensus 660 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~ 739 (1018)
+++..||..++++.+ |.+=+.. +.++-.+...+..+..++...|..... ..+.+..
T Consensus 604 ~e~I~P~~~~ivq~l-----------------p~LWe~s--~~e~lLr~alL~~L~~lV~alg~qS~~-----~~~fL~p 659 (978)
T KOG1993|consen 604 SEHIAPYASTIVQYL-----------------PLLWEES--EEEPLLRCALLATLRNLVNALGAQSFE-----FYPFLYP 659 (978)
T ss_pred HHhhhHHHHHHHHHH-----------------HHHHhhh--ccCcHHHHHHHHHHHHHHHHhccCCcc-----chHHHHH
Confidence 999999999877643 3332222 334445566777888888888865321 1122223
Q ss_pred HHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccchhhhhHhHH
Q 001749 740 LLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLA 819 (1018)
Q Consensus 740 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~ 819 (1018)
++.-...-++ ..-..+.+...++...+.... +.+.|-+-.++|.+...+..+.. .-..++.++.
T Consensus 660 VIel~~D~~s-------------P~hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste--~L~t~l~Ii~ 723 (978)
T KOG1993|consen 660 VIELSTDPSS-------------PEHVYLLEDGMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTE--NLPTVLMIIS 723 (978)
T ss_pred HHHHhcCCCC-------------CceeehhhhHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhh--hHHHHHHHHH
Confidence 3332111100 011122233335555554433 46667777888888888776542 2445566664
Q ss_pred HHHhh-cCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHH
Q 001749 820 EVARD-MGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNA 898 (1018)
Q Consensus 820 ~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na 898 (1018)
..+-- .+..+..|...+...+.+.+.+-..+--++.+..+..+++..+---..+.+.+++.+...+-..+..+.+.---
T Consensus 724 sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~y 803 (978)
T KOG1993|consen 724 SYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEY 803 (978)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHH
Confidence 43322 23334556666666666666543334334444444444444321001133344444443333334455666666
Q ss_pred HHHHHHHHHhCCCCC-------C-----hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhhhhhhHHHHHHHH
Q 001749 899 AGAVARMIMVNPQSI-------P-----LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAE 966 (1018)
Q Consensus 899 ~~al~~l~~~~~~~~-------~-----~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~ 966 (1018)
+..++|+...+|+.+ + +..++..|+..++...+.+.++--.-++..+...+|+.+...++.|++.-.+
T Consensus 804 l~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~nl~~e 883 (978)
T KOG1993|consen 804 LLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMNLWFE 883 (978)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHHHHHH
Confidence 778888888887763 1 3467888999888877777666666778888988999998888888776655
Q ss_pred HhcC----CC--C----------------C---h-----------------HHHHHHHHHHHHHHHHhHh-hHHHHHhcC
Q 001749 967 VVVS----PE--E----------------S---S-----------------EVKSQVGMAFSHLISLYGQ-QMQPLLSNL 1003 (1018)
Q Consensus 967 ~~~~----~~--~----------------~---~-----------------~~~~~~~~~l~~~~~~~~~-~~~~~~~~l 1003 (1018)
.+.+ .. . + + ..+.-+...++.+....+. -+++++...
T Consensus 884 ~L~eV~ed~~g~~~~~~~~d~~~e~~~~~d~tteq~~r~k~l~lkDPVh~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tV 963 (978)
T KOG1993|consen 884 VLSEVMEDANGDATDYHLNDDLSEQGVYEDETTEQDTRHKQLLLKDPVHSVSLRSFIISVLMFLQDALGEQRYQQYLSTV 963 (978)
T ss_pred HHHHHhhhccCchHHHHhhhhhhccccCCchhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 5431 00 0 0 0 1233444555555566664 478999999
Q ss_pred CHHHHHHHHhhcC
Q 001749 1004 SPAHATALAAFAP 1016 (1018)
Q Consensus 1004 ~~~~~~~l~~~~~ 1016 (1018)
+|+.++.+|.+++
T Consensus 964 np~lleqlq~fl~ 976 (978)
T KOG1993|consen 964 NPELLEQLQMFLS 976 (978)
T ss_pred CHHHHHHHHHHHc
Confidence 9999999999876
No 53
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.24 E-value=4.7e-08 Score=110.49 Aligned_cols=396 Identities=16% Similarity=0.232 Sum_probs=244.3
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHh
Q 001749 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFRE 202 (1018)
Q Consensus 123 l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 202 (1018)
++.++++.+.+....+..+|..+.+.... ....+++.+.+..+|.+ +++.||..+++.+.+++...........-.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP--DSLLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 88888877777778888889988876432 22367888999999999 9999999999999998865422111111134
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhH
Q 001749 203 FIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (1018)
Q Consensus 203 ~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~ 281 (1018)
+++.++. ++.+++.++...|..+|..++.+... +...++ .+...+...+.+. ++.+|..+++++..++..++
T Consensus 120 l~~~i~~----~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 120 LLPLIIQ----CLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHHHHHH----HHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCH
Confidence 5555544 57889999999999999999975432 222211 1133333444432 56789889998888876555
Q ss_pred HHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHH
Q 001749 282 NSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAI 361 (1018)
Q Consensus 282 ~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l 361 (1018)
..... .. -..+++.+...+.++|.-.|..++..+
T Consensus 193 ~~~~~---------------------------------------~~-------~sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 193 EAAEA---------------------------------------VV-------NSGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred HHHHH---------------------------------------HH-------hccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 43211 00 001333344456667777788888888
Q ss_pred HHHhhcCh--HHHHH--hHHHHHHHHHhhcCCC-ChhH-HHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHH
Q 001749 362 GIISEGCA--EWMKE--KLESVLHIVLGALRDP-EQFV-RGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEV 435 (1018)
Q Consensus 362 ~~l~~~~~--~~~~~--~l~~l~~~l~~~l~d~-~~~V-r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v 435 (1018)
+.+++... ..+.. .++.+...+...-.|+ ...+ -...+...|.++..-+..+...++.++..+...+.+.++..
T Consensus 227 ~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~ 306 (503)
T PF10508_consen 227 SELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTI 306 (503)
T ss_pred HHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 88877321 12221 1334444444443444 1222 22333566667665445556677888888888888888899
Q ss_pred HHHHHHHHHHHHhhh-ccc-c----ccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHH-----
Q 001749 436 KEKSYYALAAFCEDM-GEE-I----LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLE----- 504 (1018)
Q Consensus 436 ~~~a~~al~~l~~~~-~~~-~----~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~----- 504 (1018)
+..|..+++.++... |.. + .+-+..++..+.....+....+|..++.+++.+....++.-..-+..+..
T Consensus 307 ~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 307 REVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYES 386 (503)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 999999999998766 332 2 24556778888888888888999999999999975544311111111111
Q ss_pred --------HHHHHHhccCchhhhhHHHHHHHHHHHHHhh-hhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q 001749 505 --------LLKIFMVLTNDEDLRSRARATELLGLVAESV-GRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (1018)
Q Consensus 505 --------~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~-g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (1018)
.+..+++ .+=..+|..++..+..++..- |-..+ -..+.+++.+++.-...+.+.++.=+.++.++++
T Consensus 387 ~~~~~~~~~l~~~~~---qPF~elr~a~~~~l~~l~~~~Wg~~~i-~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 387 LSGSPLSNLLMSLLK---QPFPELRCAAYRLLQALAAQPWGQREI-CSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred hcCCchHHHHHHHhc---CCchHHHHHHHHHHHHHhcCHHHHHHH-HhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 2222222 122346667777777776321 21111 1235567776654444466677777777777775
Q ss_pred Hcc
Q 001749 576 VLE 578 (1018)
Q Consensus 576 ~~~ 578 (1018)
...
T Consensus 463 ~~~ 465 (503)
T PF10508_consen 463 SST 465 (503)
T ss_pred ccc
Confidence 543
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.23 E-value=2.2e-09 Score=130.62 Aligned_cols=274 Identities=20% Similarity=0.227 Sum_probs=191.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHH
Q 001749 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (1018)
Q Consensus 120 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 199 (1018)
++.|.+.+.++++.+|..|+..|+.+- -+..++.|...|.| ++..||..|+.+|..+....+.
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGD-GAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCc------
Confidence 467778888899999999999988763 13456777788888 8899999999998877554321
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 001749 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (1018)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~ 279 (1018)
.+.+. ..+.++++.++..+++.|..+....+ ..+ +..+. +.+..+|..|+..+..+-.
T Consensus 686 ----~~~L~----~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l----~~~L~--D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 686 ----APALR----DHLGSPDPVVRAAALDVLRALRAGDA-------ALF----AAALG--DPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred ----hHHHH----HHhcCCCHHHHHHHHHHHHhhccCCH-------HHH----HHHhc--CCCHHHHHHHHHHHhcccC-
Confidence 12222 34566788899999888887642111 112 23333 4577899988887765411
Q ss_pred hHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHH
Q 001749 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVT 359 (1018)
Q Consensus 280 ~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~ 359 (1018)
.+ .+...+. |++..+|..+..+|..+...-+ ..++.+...++++++.+|.+|+.
T Consensus 744 ----------~~----~l~~~l~-------D~~~~VR~~aa~aL~~~~~~~~-----~~~~~L~~ll~D~d~~VR~aA~~ 797 (897)
T PRK13800 744 ----------VE----SVAGAAT-------DENREVRIAVAKGLATLGAGGA-----PAGDAVRALTGDPDPLVRAAALA 797 (897)
T ss_pred ----------cH----HHHHHhc-------CCCHHHHHHHHHHHHHhccccc-----hhHHHHHHHhcCCCHHHHHHHHH
Confidence 01 1222222 3345788888888877754222 12344556788999999999999
Q ss_pred HHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHH
Q 001749 360 AIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKS 439 (1018)
Q Consensus 360 ~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a 439 (1018)
+|+.+... +.+.+.+...+.|+++.||.+|+++|+.+.. +..++.|...|.|+++.||..|
T Consensus 798 aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 798 ALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred HHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHH
Confidence 99887542 1233557778899999999999999987642 2455888888899999999999
Q ss_pred HHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001749 440 YYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (1018)
Q Consensus 440 ~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~ 486 (1018)
..+|+.+ +--+...+.|...+++.+..||..|..+|+.
T Consensus 859 ~~aL~~~---------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 859 VLALTRW---------PGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhcc---------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999885 1123456777788899999999999988863
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.22 E-value=2.8e-09 Score=104.41 Aligned_cols=392 Identities=15% Similarity=0.172 Sum_probs=242.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhhhhh-hccCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCC---
Q 001749 39 ALVQHLRTAKTPNVRQLAAVLLRKKITGH-WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG--- 114 (1018)
Q Consensus 39 ~l~~~l~~~~~~~~R~~a~~~l~~~i~~~-w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~--- 114 (1018)
.|.+.+- +.+-+.+..|..-||+.+++- -..+.+-....+...+.+.+...........++-++..|++....+.
T Consensus 75 ~lt~~l~-SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 75 QLTQQLF-SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 3444333 445666666777788888753 33455556667778888888644556677788999999987432111
Q ss_pred CccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccH--HHHHHHHHHhcCC-CCCHHHHHHHHHHHHHhhccc
Q 001749 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKCLQD-ETSNRVRIAALKAIGSFLEFT 191 (1018)
Q Consensus 115 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d-~~~~~vr~~a~~~l~~~~~~~ 191 (1018)
.-..-+|.+++++.+.+..+|+.+..+|+.++.+.+. ...|+ ...+..++..+.+ ..+...-..+.+.|+++.+-.
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 1134689999999999999999999999999865432 11221 1123333333333 234566667889999999876
Q ss_pred CChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHH-HHHHHHHHhcCCCCChHHHHHHH
Q 001749 192 NDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAI 270 (1018)
Q Consensus 192 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-li~~l~~~~~~~~~~~~~r~~a~ 270 (1018)
..+.........+|.+.. .+...|+++...||+.+..+.+......+..+.. +...+.+.+.++ +..+..
T Consensus 233 nP~P~w~~isqalpiL~K----Liys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iqt--- 303 (526)
T COG5064 233 NPPPDWSNISQALPILAK----LIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQT--- 303 (526)
T ss_pred CCCCchHHHHHHHHHHHH----HHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--cccccC---
Confidence 555555555555555444 5677899999999999998887554433222211 111122222222 111111
Q ss_pred HHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCC
Q 001749 271 QIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS 350 (1018)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~ 350 (1018)
+.+..+-.+.+..++ .+ +. .-.+ -+++.+...+.++.
T Consensus 304 ---------------------PalR~vGNIVTG~D~------QT------qv----iI~~------G~L~a~~~lLs~~k 340 (526)
T COG5064 304 ---------------------PALRSVGNIVTGSDD------QT------QV----IINC------GALKAFRSLLSSPK 340 (526)
T ss_pred ---------------------HHHHhhcCeeecCcc------ce------eh----heec------ccHHHHHHHhcChh
Confidence 122222122222111 00 00 0011 12334444578888
Q ss_pred hhHHHHHHHHHHHHhhcChHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhc--CHHHHHhh--hhHHHHHH
Q 001749 351 PKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYL--QPEIVSHY--ESVLPCIL 425 (1018)
Q Consensus 351 ~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~~--~~~l~~l~ 425 (1018)
...|+-+++.++.+..|..+.+...++ .++|.++..|...+..+|..|||+++...... .|++-.|+ ..++..|.
T Consensus 341 e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc 420 (526)
T COG5064 341 ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC 420 (526)
T ss_pred hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence 899999999999999998877766554 57889999999999999999999999988765 34555554 56788888
Q ss_pred HhccCCChHHHHHHHHHHHHHHhhh-------cccccc---chH--HHHHHHHHhhcCCCHhHHHHHHHHH
Q 001749 426 NALEDESDEVKEKSYYALAAFCEDM-------GEEILP---FLD--PLMGKLLAALENSPRNLQETCMSAI 484 (1018)
Q Consensus 426 ~~l~~~~~~v~~~a~~al~~l~~~~-------~~~~~~---~~~--~l~~~l~~~l~~~~~~vr~~al~al 484 (1018)
..|.-.+.++-+-+..++.++++.. ++.+.. |.+ ..|+.+..+-++.+..+-..|.+.|
T Consensus 421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsII 491 (526)
T COG5064 421 DLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSII 491 (526)
T ss_pred HHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHH
Confidence 8887776677777888888887653 223322 333 3456666665555655555555443
No 56
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.20 E-value=3.7e-09 Score=128.60 Aligned_cols=273 Identities=19% Similarity=0.196 Sum_probs=193.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHH
Q 001749 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (1018)
Q Consensus 81 ~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l 160 (1018)
+.|++.|. ++++.||..++..|+.+.. ++.++.|.+.+.++++.+|..++..|..+.+..+.
T Consensus 624 ~~L~~~L~-D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 624 AELAPYLA-DPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 46666665 6899999999999987642 45788999999999999999999999887543321
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001749 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1018)
Q Consensus 161 ~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (1018)
.+.+...|.+ +++.||.+|+.+|..+-.. + ...+ ...+.++++.++..++..|..+-. .
T Consensus 686 ~~~L~~~L~~-~d~~VR~~A~~aL~~~~~~--~----------~~~l----~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 686 APALRDHLGS-PDPVVRAAALDVLRALRAG--D----------AALF----AAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHhhccC--C----------HHHH----HHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 1345567777 8999999999998875311 1 1112 235788999999999999887522 1
Q ss_pred hhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHH
Q 001749 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (1018)
Q Consensus 241 ~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~ 320 (1018)
+.+ ...+. |.+..+|..+...|..+....+ ..++.+..++.+ +++.+|..|.
T Consensus 745 -----~~l----~~~l~--D~~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D-------~d~~VR~aA~ 796 (897)
T PRK13800 745 -----ESV----AGAAT--DENREVRIAVAKGLATLGAGGA----------PAGDAVRALTGD-------PDPLVRAAAL 796 (897)
T ss_pred -----HHH----HHHhc--CCCHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcC-------CCHHHHHHHH
Confidence 112 22333 4578999999888876653221 112334444432 3357888888
Q ss_pred HHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 001749 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (1018)
Q Consensus 321 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~ 400 (1018)
.+|..+.. . +.+.+.+...+++++|.+|.+|+.+|+.+.. +..++.+...|.|+++.||..|.+
T Consensus 797 ~aLg~~g~---~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 797 AALAELGC---P---PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred HHHHhcCC---c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHH
Confidence 88766632 1 1222345567899999999999999987653 244578888899999999999999
Q ss_pred HHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 001749 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (1018)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (1018)
+|+.+. . -+...+.|...++|.+..||..|..+|..
T Consensus 861 aL~~~~--~-------~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRWP--G-------DPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccC--C-------CHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999961 1 12456777788899999999999998863
No 57
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.7e-07 Score=101.02 Aligned_cols=436 Identities=11% Similarity=0.136 Sum_probs=268.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHh-cCCCc----HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHH
Q 001749 5 LELLLIQFLMPDNDARRQAEDQIKRLA-KDPQV----VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (1018)
Q Consensus 5 l~~~l~~~~s~d~~~r~~A~~~L~~~~-~~p~~----~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i 79 (1018)
+.++..+.-|.|.+++|-.--+|-++. ++|+. +..+-.-| ..+++-+|-.|.-.|..+ .-....-|
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L-~DpN~LiRasALRvlSsI--------Rvp~IaPI 143 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKAL-KDPNQLIRASALRVLSSI--------RVPMIAPI 143 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhh-cCCcHHHHHHHHHHHHhc--------chhhHHHH
Confidence 345556666666666666666666654 34553 22222222 244566666654443221 11222223
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHH
Q 001749 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (1018)
Q Consensus 80 ~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 159 (1018)
.-.-++....++.+.||+.+|.+|-.+.+.+. ++.+++...+..++.+.++.+.-+|..+|..+|-.--+.+.+++..
T Consensus 144 ~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrk 221 (968)
T KOG1060|consen 144 MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRK 221 (968)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh--hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHH
Confidence 33333333457899999999999999988763 3566899999999999999999999999999986555555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhhccc-CChhh--------------HH---------HHHhhHHHHHHHHHHHh
Q 001749 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFT-NDGAE--------------VV---------KFREFIPSILNVSRQCL 215 (1018)
Q Consensus 160 l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~-~~~~~--------------~~---------~~~~~~~~ll~~l~~~l 215 (1018)
+..++.+. +.-=+...+..|.++++.. .++.. .. ....=+..+++.+..++
T Consensus 222 lC~ll~dv-----deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl 296 (968)
T KOG1060|consen 222 LCRLLPDV-----DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL 296 (968)
T ss_pred HHhhccch-----hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence 55443321 1112334455555554321 11100 00 00112334666666677
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHH
Q 001749 216 ASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ 295 (1018)
Q Consensus 216 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~ 295 (1018)
.+.++.+..++++.+..++... ....++..++..+.. ..+++...+..+.+++...+.++.. +++..
T Consensus 297 ~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~~~~lF~P--~lKsF-- 363 (968)
T KOG1060|consen 297 QSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISIKRPTLFEP--HLKSF-- 363 (968)
T ss_pred hcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhcchhhhhh--hhhce--
Confidence 8889999999999988877422 233333333333332 3467888888888888777665543 22211
Q ss_pred HHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHh
Q 001749 296 VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK 375 (1018)
Q Consensus 296 ~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 375 (1018)
..... .+......-|..|+.-....-+..+++.++.++++.+...-.+++.++|..+..... .
T Consensus 364 -----fv~ss--------Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v 426 (968)
T KOG1060|consen 364 -----FVRSS--------DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----V 426 (968)
T ss_pred -----EeecC--------CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----h
Confidence 00010 112222223334444444456778888889999998876667777888887765432 3
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhhcccc
Q 001749 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEI 454 (1018)
Q Consensus 376 l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~ 454 (1018)
-+..+.-++..+...+..|...+...|..+...-+.... .++..+.+.+..- .+..|....|.++..|+..+
T Consensus 427 ~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~----~ii~~La~lldti~vp~ARA~IiWLige~~e~vp--- 499 (968)
T KOG1060|consen 427 TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL----EILFQLARLLDTILVPAARAGIIWLIGEYCEIVP--- 499 (968)
T ss_pred hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH----HHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc---
Confidence 346667777777888889999999999998876544332 3444444444322 24566777888998888743
Q ss_pred ccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc
Q 001749 455 LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1018)
Q Consensus 455 ~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~ 494 (1018)
...+.++..+.+-+.+....++.+++...+.+-....++
T Consensus 500 -ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~ 538 (968)
T KOG1060|consen 500 -RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ 538 (968)
T ss_pred -hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh
Confidence 346789999999999999999999998888776655554
No 58
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=4.1e-05 Score=88.65 Aligned_cols=180 Identities=15% Similarity=0.242 Sum_probs=119.3
Q ss_pred HHhHHHHHHHH---hCCChHHHHHHHHHHHHHhhccC---CCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcC
Q 001749 772 VSDLLPAFAKS---MGPHFAPIFAKLFDPLMKFAKSS---RPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA 845 (1018)
Q Consensus 772 ~~~~l~~l~~~---~~~~~~~~~~~l~~~l~~~l~~~---~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~ 845 (1018)
+++.+..++.. .| =...+..+.|.+.+..+.. ..+..+.+|.-+++.++.- ...|...=+|.+...+.
T Consensus 897 ~~d~i~~icE~eLl~g--ek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i----Sa~fces~l~llftime 970 (1251)
T KOG0414|consen 897 LADLISGICEKELLYG--EKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI----SAEFCESHLPLLFTIME 970 (1251)
T ss_pred HHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHh
Confidence 34555555442 23 1356777888888877432 1235577888888877643 24566666788888887
Q ss_pred -CCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCCChhhHHHHHHh
Q 001749 846 -SPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLK 924 (1018)
Q Consensus 846 -~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~ 924 (1018)
++++-+|.|++.|+|-++.+.+.-+-|+.+.+...| .+++..+|.+|+-.+..++...- +.+...++....
T Consensus 971 ksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL------~D~~~~vRkta~lvlshLILndm--iKVKGql~eMA~ 1042 (1251)
T KOG0414|consen 971 KSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRL------RDESPSVRKTALLVLSHLILNDM--IKVKGQLSEMAL 1042 (1251)
T ss_pred cCCCceeeecchheccchhhhcccccchhhHHHHHHh------cCccHHHHHHHHHHHHHHHHhhh--hHhcccHHHHHH
Confidence 899999999999999999988875555555555544 46678999999999999988642 223555555444
Q ss_pred hCCCCCcHHhhHHHHHHHHHHHhhcChhhhhhhhHHHHHHHHH
Q 001749 925 VLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEV 967 (1018)
Q Consensus 925 ~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~~ 967 (1018)
.+ .++.++...+.+.+.+=+.+.+..+++.+|.|+.-+.+.
T Consensus 1043 cl--~D~~~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1043 CL--EDPNAEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred Hh--cCCcHHHHHHHHHHHHHhhhcccchhhhchHHHHhhccC
Confidence 33 334455556666666555556666778888777665544
No 59
>PRK09687 putative lyase; Provisional
Probab=99.16 E-value=1.2e-08 Score=105.01 Aligned_cols=254 Identities=15% Similarity=0.112 Sum_probs=175.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHH
Q 001749 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (1018)
Q Consensus 120 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 199 (1018)
++.|...+.+++...|..+...|+.+-. +.+++.+...+.+ +++.+|..|+++|+.+-.....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~------ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSS-KNPIERDIGADILSQLGMAKRC------ 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccc------
Confidence 4566777788899999999999887632 3456667777778 8999999999999986432110
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 001749 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (1018)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~ 279 (1018)
....+|.+... ..+++++.++..++..|+.+....... .+.+++.+.....+ .+..+|..+...+..+.
T Consensus 88 ~~~a~~~L~~l---~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D--~~~~VR~~a~~aLg~~~-- 156 (280)
T PRK09687 88 QDNVFNILNNL---ALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFD--KSTNVRFAVAFALSVIN-- 156 (280)
T ss_pred hHHHHHHHHHH---HhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhC--CCHHHHHHHHHHHhccC--
Confidence 12244444443 257788899999999998875433222 22233333333333 37789999888774332
Q ss_pred hHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHH
Q 001749 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVT 359 (1018)
Q Consensus 280 ~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~ 359 (1018)
-+..++.+++.+.+ +++.+|..|..+|+.+. .+ -+...+.+...+.+.+|.+|..|+.
T Consensus 157 ----------~~~ai~~L~~~L~d-------~~~~VR~~A~~aLg~~~--~~---~~~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 157 ----------DEAAIPLLINLLKD-------PNGDVRNWAAFALNSNK--YD---NPDIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred ----------CHHHHHHHHHHhcC-------CCHHHHHHHHHHHhcCC--CC---CHHHHHHHHHHhcCCChHHHHHHHH
Confidence 12345666666653 33568999888888772 11 2344555666789999999999999
Q ss_pred HHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhcc-CCChHHHHH
Q 001749 360 AIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEK 438 (1018)
Q Consensus 360 ~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~v~~~ 438 (1018)
+||.+.. +..+|.|++.+++++ +|..++.++|.+... ..+|.|...+. +++.+|+..
T Consensus 215 aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~ 272 (280)
T PRK09687 215 GLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITK 272 (280)
T ss_pred HHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHH
Confidence 9988643 267888888888876 677888999988652 57777777776 777889988
Q ss_pred HHHHHHH
Q 001749 439 SYYALAA 445 (1018)
Q Consensus 439 a~~al~~ 445 (1018)
+.+++..
T Consensus 273 a~~a~~~ 279 (280)
T PRK09687 273 AIDKLKR 279 (280)
T ss_pred HHHHHhc
Confidence 8887753
No 60
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.10 E-value=1.1e-09 Score=91.08 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCC
Q 001749 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (1018)
Q Consensus 353 ~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 432 (1018)
.|++++.++++++.+.+..+..+++.+++.++.++.|++++||+.||.++..++...+..+.++++.+++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 69999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 001749 433 DEVKEKSYYALAAFC 447 (1018)
Q Consensus 433 ~~v~~~a~~al~~l~ 447 (1018)
++||..| ..|..++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999776 4455443
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.09 E-value=2.1e-07 Score=103.15 Aligned_cols=378 Identities=15% Similarity=0.167 Sum_probs=235.7
Q ss_pred HHHHHhhcCCCh---HHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChh--
Q 001749 121 PFLFQFSQSEQE---EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA-- 195 (1018)
Q Consensus 121 ~~l~~~~~s~~~---~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~-- 195 (1018)
|.+++.+.+.+. ...+..+.++..++.... .+......++..+........+...-...+.++..++.......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 566666665443 456677778887764332 22333345555555555443466677778888888876553322
Q ss_pred -hHHHHHh--hHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHhcCCcc-chhHhHHHHHHHHHHH-----hcCCCC-C
Q 001749 196 -EVVKFRE--FIPSILNVSRQCLASGE---EDVAVIAFEIFDELIESPAP-LLGDSVKSIVHFSLEV-----SSSHNL-E 262 (1018)
Q Consensus 196 -~~~~~~~--~~~~ll~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~~-~~~~~~~~li~~l~~~-----~~~~~~-~ 262 (1018)
....+.+ ++|.+++........+. +.....+.+.+..+....+. .-+..+..+...++.. ...... .
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 2233333 78888887655433222 33444444444444433222 1222333344333300 000000 0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-hhchHHHHHH
Q 001749 263 PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEF 341 (1018)
Q Consensus 263 ~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~ 341 (1018)
.......+.++..+...-++...- +....++..++.+.....+ ...+..+.+++..+++.++ .+.+..++..
T Consensus 161 ~~~~~~~~~l~~~il~~l~~~~~~-~~~~~ll~~l~~~~~~~~~------~~~~~~~~~~la~LvNK~~~~~~l~~~l~~ 233 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSLRKDVSL-PDLEELLQSLLNLALSSED------EFSRLAALQLLASLVNKWPDDDDLDEFLDS 233 (415)
T ss_pred ccccccHHHHHHHHHHcCCcccCc-cCHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHHcCCCChhhHHHHHHH
Confidence 011222233333333222211111 1344566666666554432 4678889999999999976 4455666665
Q ss_pred HHhhh-cCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCH--------H
Q 001749 342 ASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--------E 412 (1018)
Q Consensus 342 l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--------~ 412 (1018)
+.... .+.....|..++..+..++.+.--...+....++..++..+.| +.+...+..+++-+....+. .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 234 LLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred HHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 55545 4556667777777777777653211123344666777777777 77788899999998876321 1
Q ss_pred -----HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccc-cccchHHHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001749 413 -----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (1018)
Q Consensus 413 -----~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~ 486 (1018)
-++++..++|.+++...+.+...+.....||..++++.+.. +.++++.++|.+++.++.++..++..++.++..
T Consensus 312 vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 312 VKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 13567889999999999887778899999999999999765 569999999999999999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHH
Q 001749 487 VAAAAEQAFIPYAERVLELLKI 508 (1018)
Q Consensus 487 l~~~~~~~~~~~~~~i~~~l~~ 508 (1018)
+....++.+.+|++.++|.|.+
T Consensus 392 ~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 392 ILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh
Confidence 9999988999999999998764
No 62
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.09 E-value=2e-08 Score=106.98 Aligned_cols=219 Identities=16% Similarity=0.166 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHhHH--HhhhcCChHHHHH
Q 001749 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN---LEPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQ 295 (1018)
Q Consensus 221 ~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~---~~~~~r~~a~~~l~~~~~~~~~--~~~~~~~~~~i~~ 295 (1018)
.++..+|+++...++...+.|+++++.+++..++++.+-. ..+.+-..++.|+.++++.... .+...+.+..++.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 3456778888888888788888999999988887765422 2345566788999887764321 2222234555554
Q ss_pred -HHhhhhccCCCC----------------CCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc------CCChh
Q 001749 296 -VMCPLLAESNEA----------------GEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ------NASPK 352 (1018)
Q Consensus 296 -~l~~~l~~~~~d----------------~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~------~~~~~ 352 (1018)
.++|.|+-.++| +..|..+.|++|...+..++..+++.+.+.+..++...++ +.+|+
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWR 270 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HH
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHH
Confidence 667887744322 1134568899999999999999998888887777777665 57899
Q ss_pred HHHHHHHHHHHHhhcChH------------HHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhh
Q 001749 353 YREAAVTAIGIISEGCAE------------WMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (1018)
Q Consensus 353 ~r~aal~~l~~l~~~~~~------------~~~~~l~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (1018)
.+.+|+..++.++..... .+..++. .++|-+. .-.+.+|.+|..|++.+..+-..+++ +.+..
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~ 346 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQ 346 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHH
Confidence 999999999999875421 1222221 2334333 22267899999999999999988764 57888
Q ss_pred HHHHHHHhccCCChHHHHHHHHHH
Q 001749 420 VLPCILNALEDESDEVKEKSYYAL 443 (1018)
Q Consensus 420 ~l~~l~~~l~~~~~~v~~~a~~al 443 (1018)
++|.++..|.+++..|+.-|+.++
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhhC
Confidence 999999999999888888777664
No 63
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.5e-08 Score=100.34 Aligned_cols=379 Identities=14% Similarity=0.108 Sum_probs=232.9
Q ss_pred CChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHH
Q 001749 130 EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILN 209 (1018)
Q Consensus 130 ~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~ 209 (1018)
.+.+....+...+..+.+..-. ....+....+...+++ .+..++.++..++++++-..+.......+..+-+.+.+
T Consensus 59 DnlnlqrsaalafAeitek~vr---~Vsres~epvl~llqs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~q 134 (550)
T KOG4224|consen 59 DNLNLQRSAALAFAEITEKGVR---RVSRESNEPVLALLQS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQ 134 (550)
T ss_pred cccccchHHHHHHHHHHHHHHH---HhhhhhhhHHHHHHhC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHH
Confidence 3334444555566666554322 2223334455566777 88899999999999987666432222222333333333
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHH--Hhhhc
Q 001749 210 VSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN--SLKKH 287 (1018)
Q Consensus 210 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~--~~~~~ 287 (1018)
.+.+ ..+++..+..|+..++.......+-.-..-+..+.++.+ ..+..+|..+.+.+..+...... ....
T Consensus 135 ----mmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLak--skdirvqrnatgaLlnmThs~EnRr~LV~- 206 (550)
T KOG4224|consen 135 ----MMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAK--SKDIRVQRNATGALLNMTHSRENRRVLVH- 206 (550)
T ss_pred ----hcCC-CcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcc--cchhhHHHHHHHHHHHhhhhhhhhhhhhc-
Confidence 3443 456677778888888765433222111111222334333 34778899999998887643321 1111
Q ss_pred CChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-----hhchHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 001749 288 KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIG 362 (1018)
Q Consensus 288 ~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~ 362 (1018)
..-+++++.++...+. .++..+..+++.++-.-. .+.-|.+++.+...+.+++.+++.-|-.+++
T Consensus 207 ---aG~lpvLVsll~s~d~-------dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 207 ---AGGLPVLVSLLKSGDL-------DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALR 276 (550)
T ss_pred ---cCCchhhhhhhccCCh-------hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHh
Confidence 1234455556655432 455566666666653221 2334668888888899999999999999999
Q ss_pred HHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCCh-HHHHHHHH
Q 001749 363 IISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD-EVKEKSYY 441 (1018)
Q Consensus 363 ~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~v~~~a~~ 441 (1018)
.++....-...-.-..-+|.+++.++++....-.+...|+..++-+-..+..-.-..++..|+..|...+. .++-+|..
T Consensus 277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 99875432211111234677888889988777788889998888765443221223566677777775544 59999999
Q ss_pred HHHHHHhhhccccccchH-HHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHhccCchhh
Q 001749 442 ALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDL 518 (1018)
Q Consensus 442 al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~ 518 (1018)
.|.+++.+.......+.+ .-++.+..++-+.+..+|+..-.|++.++.. +.+..++ ..++|.|.... .++..
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t---~s~s~ 431 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWT---GSESE 431 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeeccc---Cccch
Confidence 999999877655444444 5788999999999999999999999988644 3334443 22555554332 33444
Q ss_pred hhHHHHHHHHHHHHHhh
Q 001749 519 RSRARATELLGLVAESV 535 (1018)
Q Consensus 519 ~~r~~a~~~l~~l~~~~ 535 (1018)
++|+.+..+++.++..+
T Consensus 432 Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 432 EVRGNAAAALINLSSDV 448 (550)
T ss_pred hhcccHHHHHHhhhhhh
Confidence 57777777777776543
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=7.7e-06 Score=90.47 Aligned_cols=486 Identities=14% Similarity=0.135 Sum_probs=273.3
Q ss_pred ChHHHHHHHHHH--HHHhcCCC-cH-HHHHHHHhcCC--ChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhh
Q 001749 16 DNDARRQAEDQI--KRLAKDPQ-VV-PALVQHLRTAK--TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL 89 (1018)
Q Consensus 16 d~~~r~~A~~~L--~~~~~~p~-~~-~~l~~~l~~~~--~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~ 89 (1018)
|+.-|++--..| -++.-.|. |- ..++.+++++. +..+-.+|+.+|-.. +.+..--+.+.+-+.|.+
T Consensus 47 d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE--------~qdvllLltNslknDL~s 118 (866)
T KOG1062|consen 47 DPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDE--------RQDLLLLLTNSLKNDLNS 118 (866)
T ss_pred CHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhcc--------chHHHHHHHHHHHhhccC
Confidence 444455444444 24555563 42 24556565543 334446667666422 223333444555555554
Q ss_pred cCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcC
Q 001749 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQ 169 (1018)
Q Consensus 90 e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 169 (1018)
++..+.-.+-.+++.|+.. .--+++.|.+.+.+++.++..|.-|..|...+....++. +..+++.+.+.|.
T Consensus 119 -~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l----~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 119 -SNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL----VEHFVIAFRKLLC 189 (866)
T ss_pred -CCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH----HHHhhHHHHHHHh
Confidence 5555544444444555443 356889999999999999999999999999888777643 3455667777787
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHH
Q 001749 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIV 249 (1018)
Q Consensus 170 d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li 249 (1018)
+ .+.-|-.+++..+..++...+ +....|+.+.|.++..+.+....+-+... .+.. .-+|+++--+
T Consensus 190 e-k~hGVL~~~l~l~~e~c~~~~--~~l~~fr~l~~~lV~iLk~l~~~~yspey--------dv~g----i~dPFLQi~i 254 (866)
T KOG1062|consen 190 E-KHHGVLIAGLHLITELCKISP--DALSYFRDLVPSLVKILKQLTNSGYSPEY--------DVHG----ISDPFLQIRI 254 (866)
T ss_pred h-cCCceeeeHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHhcCCCCCcc--------CccC----CCchHHHHHH
Confidence 7 777788888888888887754 34677888999999988776643211100 0000 1122222222
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhc--CChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHH
Q 001749 250 HFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH--KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (1018)
Q Consensus 250 ~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~--~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~ 327 (1018)
-.++.++...+.+ ....-..+|..++.+.... ++. -.+-..+..++.+..+ ...|..|
T Consensus 255 LrlLriLGq~d~d--aSd~M~DiLaqvatntdss-kN~GnAILYE~V~TI~~I~~~---------~~Lrvla-------- 314 (866)
T KOG1062|consen 255 LRLLRILGQNDAD--ASDLMNDILAQVATNTDSS-KNAGNAILYECVRTIMDIRSN---------SGLRVLA-------- 314 (866)
T ss_pred HHHHHHhcCCCcc--HHHHHHHHHHHHHhccccc-ccchhHHHHHHHHHHHhccCC---------chHHHHH--------
Confidence 2223333333222 1222223343443321100 000 0111111112111111 1223333
Q ss_pred HHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001749 328 LNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1018)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 407 (1018)
...+.+++.+.+-..|+.|+.+|..+...-+.....|- ..|+.||+|++..+|..|+...-.+..
T Consensus 315 -----------iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 315 -----------INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred -----------HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 33444567788888999999999999887666555553 367788999999999999999888875
Q ss_pred hcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 001749 408 YLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (1018)
Q Consensus 408 ~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l 487 (1018)
. ..+..++..++..|...++..+..+..-+..+++.+...=.=| ++.+.++|...-..|+..+...+-.+
T Consensus 380 ~------~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~----idtml~Vl~~aG~~V~~dv~~nll~L 449 (866)
T KOG1062|consen 380 E------SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH----IDTMLKVLKTAGDFVNDDVVNNLLRL 449 (866)
T ss_pred c------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH----HHHHHHHHHhcccccchhhHHHHHHH
Confidence 5 2345666677777776677888888888888888874322223 34445555554445666666666666
Q ss_pred HHHhhccchhhH-HHHHHHHHHH-HhccCchhhhhHHHHHHHHHHHHHhh----hhhh-cCCChHHHHHHHHhccC--CC
Q 001749 488 AAAAEQAFIPYA-ERVLELLKIF-MVLTNDEDLRSRARATELLGLVAESV----GRAR-MEPILPPFVEAAISGFG--LE 558 (1018)
Q Consensus 488 ~~~~~~~~~~~~-~~i~~~l~~~-l~~~~~~~~~~r~~a~~~l~~l~~~~----g~~~-~~~~~~~l~~~l~~~l~--~~ 558 (1018)
+.........|. ..++-.+... +...+ +..+-.-++.|+|..+.-+ +.+. ....-..++..+.+.+. ..
T Consensus 450 Ia~~~~e~~~y~~~rLy~a~~~~~~~~is--~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s 527 (866)
T KOG1062|consen 450 IANAFQELHEYAVLRLYLALSEDTLLDIS--QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSS 527 (866)
T ss_pred HhcCCcchhhHHHHHHHHHHhhhhhhhhh--hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccc
Confidence 555422222222 1122222111 00111 1123345778888776221 1111 22223455555555444 23
Q ss_pred ChhHHHHHHHHHHHHHHHcccC
Q 001749 559 FSELREYTHGFFSNIAGVLEDG 580 (1018)
Q Consensus 559 ~~~~~~~~~~~l~~l~~~~~~~ 580 (1018)
+...+.+++.++..+...++..
T Consensus 528 ~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 528 DSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred hHHHHHHHHHHHHHHHhhcccc
Confidence 5678899999998888776655
No 65
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.01 E-value=0.00023 Score=84.62 Aligned_cols=130 Identities=15% Similarity=0.256 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCH
Q 001749 395 RGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR 474 (1018)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 474 (1018)
+..|.+..-.++.. ..+...++..+..++..+..+...+|..|..+|..+++.-+..+ --+.+-..+..-+.++..
T Consensus 794 ~~~a~li~~~la~~--r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHA--RSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred chhHHHHHHHHHhh--hHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchh
Confidence 45555555555544 34556678888888889998889999999999999988755433 234566777777888999
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhh
Q 001749 475 NLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (1018)
Q Consensus 475 ~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~ 535 (1018)
.||+.|++.+|+.+.+.++...+||+.+...+ .+....+|.+++..+..++...
T Consensus 870 sVREAaldLvGrfvl~~~e~~~qyY~~i~erI-------lDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQYYDQIIERI-------LDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHhhc-------CCCchhHHHHHHHHHHHHHHhC
Confidence 99999999999999999998889998877544 2456778999999988888644
No 66
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=5e-06 Score=98.14 Aligned_cols=224 Identities=20% Similarity=0.260 Sum_probs=160.3
Q ss_pred HHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHH
Q 001749 4 SLELLLIQFLM--PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1018)
Q Consensus 4 ~l~~~l~~~~s--~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 81 (1018)
++...+....+ ++++.|.+|.+.+.+++..|+.+.....++..++++.+|.+|..+|-+.++.+|..++.+.+..+|.
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~ 90 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKN 90 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHH
Confidence 34444445554 4789999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHhhc--------CCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcc-
Q 001749 82 SLIESITLE--------HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT- 152 (1018)
Q Consensus 82 ~Ll~~l~~e--------~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~- 152 (1018)
..+...... +...++++++.++-.|++.++| +.||+++|.+.+..+ .+...++.++.++..+.|..-..
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~-~s~~~~el~m~Il~lLsEdvf~~s 168 (1041)
T KOG2020|consen 91 YVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSK-TSETVCELSMIILLLLSEEVFDFS 168 (1041)
T ss_pred HHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhh-cCcccchHHHHHHHHHHHHHhccc
Confidence 888877532 2456888999999999999999 599999999999887 44567788888888877764210
Q ss_pred ---------------ccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhc
Q 001749 153 ---------------FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS 217 (1018)
Q Consensus 153 ---------------~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~ 217 (1018)
+...+..+..++...... .+..+-.+++..+..+..|.+-..- .-.+.+..++.. .+
T Consensus 169 s~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~-a~~~~~~atl~tl~~fl~wip~~~I--~~tn~l~~~l~~---~l-- 240 (1041)
T KOG2020|consen 169 SSELTQQKIIILKNLLENEFQQIFTLCSYIKEK-ANSELLSATLETLLRFLEWIPLGYI--FETNILELLLNK---FL-- 240 (1041)
T ss_pred chHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhcccHHHH--HHhhhHHHHHHh---cc--
Confidence 111233344455554444 3333778888888888888862110 001112222221 11
Q ss_pred CCHHHHHHHHHHHHHHhcCC
Q 001749 218 GEEDVAVIAFEIFDELIESP 237 (1018)
Q Consensus 218 ~~~~~~~~a~~~l~~l~~~~ 237 (1018)
..++.+..+++||.+++...
T Consensus 241 n~~~~r~~al~CL~ei~s~~ 260 (1041)
T KOG2020|consen 241 NAPELRNNALSCLTELLSRK 260 (1041)
T ss_pred chHHHHHHHHHHHHHHHhcc
Confidence 24566777777777776543
No 67
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.98 E-value=8.6e-07 Score=98.32 Aligned_cols=366 Identities=14% Similarity=0.147 Sum_probs=226.1
Q ss_pred HHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHh---hhcCChHH-HHHH
Q 001749 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL---KKHKLVIP-ILQV 296 (1018)
Q Consensus 221 ~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~---~~~~~~~~-i~~~ 296 (1018)
.....++++|.++.. .+..++...+.+++.+...+.... +.+.....+..+..+.+...... ....|... +++.
T Consensus 17 ~~~~~~L~~l~~ls~-~~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~ 94 (415)
T PF12460_consen 17 SNYERILEALAALST-SPQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPR 94 (415)
T ss_pred hHHHHHHHHHHHHHC-ChhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHH
Confidence 345566666666654 355566666777776666555443 55555666677777665543322 11112332 5666
Q ss_pred HhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc----------CCC--hhHHHHHHHHHHHH
Q 001749 297 MCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ----------NAS--PKYREAAVTAIGII 364 (1018)
Q Consensus 297 l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~----------~~~--~~~r~aal~~l~~l 364 (1018)
++.+.........+.++..-......+..+...++.+--..++..+...+. +.. +......+..+..+
T Consensus 95 l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 174 (415)
T PF12460_consen 95 LFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAI 174 (415)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHH
Confidence 666655443322222334455566777777777773222222332222211 111 11222222333333
Q ss_pred hhcChHH-HHHhHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhc-cCCChHHHHHHHH
Q 001749 365 SEGCAEW-MKEKLESVLHIVLGAL-RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL-EDESDEVKEKSYY 441 (1018)
Q Consensus 365 ~~~~~~~-~~~~l~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l-~~~~~~v~~~a~~ 441 (1018)
..+..+. ..+....++..++... ...++..|..++.+++.++..++.. +.++.++..+...+ .......+..+..
T Consensus 175 l~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (415)
T PF12460_consen 175 LCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALE 252 (415)
T ss_pred HHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHH
Confidence 3333322 2124445565555443 4456999999999999999876432 24556666665555 3333445555555
Q ss_pred HHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhc--------cch-----hhHHHHHHHHHH
Q 001749 442 ALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ--------AFI-----PYAERVLELLKI 508 (1018)
Q Consensus 442 al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~--------~~~-----~~~~~i~~~l~~ 508 (1018)
.+.-+.+..=-.-.|....+++.++.++.+ ..+...+..+++.+..-.++ .+. .+|..++|.+.+
T Consensus 253 ~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~ 330 (415)
T PF12460_consen 253 ILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLE 330 (415)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHH
Confidence 555555554222346677888888888887 67788888888888765321 222 355667888777
Q ss_pred HHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccchhhh
Q 001749 509 FMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLV 588 (1018)
Q Consensus 509 ~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i 588 (1018)
.....++. .|...+.+++.+.+.+.+....++++.+++.+++.+..++.+++..++.++..+...-++-+.+|+..+
T Consensus 331 ~~~~~~~~---~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sL 407 (415)
T PF12460_consen 331 GFKEADDE---IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSL 407 (415)
T ss_pred HHhhcChh---hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 66654433 455667788888888888889999999999999999988999999999999999998888899999999
Q ss_pred hHHHHhh
Q 001749 589 VPLAFSS 595 (1018)
Q Consensus 589 ~~~ll~~ 595 (1018)
+|.+++.
T Consensus 408 I~~LL~l 414 (415)
T PF12460_consen 408 IPRLLKL 414 (415)
T ss_pred HHHHHhc
Confidence 9999864
No 68
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.95 E-value=1.6e-05 Score=91.98 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=117.2
Q ss_pred CCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHcccCCCCCcc
Q 001749 47 AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE---------HSAPVRRASANVVSIIAKYAVPAGEWP 117 (1018)
Q Consensus 47 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e---------~~~~vr~~~~~~l~~i~~~~~~~~~w~ 117 (1018)
++...+|+-|++.+|-....+...++-+..+.+.-.++..+.-+ --..||...+++++...++..+ ....
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~-s~~~ 166 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDE-SLIK 166 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhh-HhhH
Confidence 56789999999999999998888777655555444444433211 1347999999999999987655 4667
Q ss_pred chHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhH
Q 001749 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (1018)
Q Consensus 118 ~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~ 197 (1018)
+.+..+.+.+..++|+.|++++..+........+.+....+.+++.+..+|.| ++..||..|...+......... ...
T Consensus 167 ~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~d-s~ddv~~~aa~~l~~~~s~~v~-l~~ 244 (1549)
T KOG0392|consen 167 ETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLED-SDDDVRSVAAQFLVPAPSIQVK-LMV 244 (1549)
T ss_pred HHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHHHHHHHhhhhhHHHHh-hhH
Confidence 78888999998889999999998888776644444446667888999999999 8889999998888766554411 112
Q ss_pred HHHHhhHHHHHHHH
Q 001749 198 VKFREFIPSILNVS 211 (1018)
Q Consensus 198 ~~~~~~~~~ll~~l 211 (1018)
.....++..++..+
T Consensus 245 ~~i~~lv~~l~~~l 258 (1549)
T KOG0392|consen 245 QKIAKLVHTLWSFL 258 (1549)
T ss_pred hHHHHHHHHHHHHH
Confidence 33334444444443
No 69
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.93 E-value=4.6e-08 Score=99.60 Aligned_cols=189 Identities=17% Similarity=0.194 Sum_probs=136.4
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHhhcC-----hHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHH
Q 001749 341 FASVSCQNASPKYREAAVTAIGIISEGC-----AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (1018)
Q Consensus 341 ~l~~~l~~~~~~~r~aal~~l~~l~~~~-----~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 415 (1018)
.+.....+.+|..|..|+..+..+..+. .+.+.+.+..++..+...+.|....|...|+.+++.++..++..+.+
T Consensus 11 ~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 11 ALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp THHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 3333457789999999999999988776 24444556677788899999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHH-HHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh--
Q 001749 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL-MGKLLAALENSPRNLQETCMSAIGSVAAAAE-- 492 (1018)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l-~~~l~~~l~~~~~~vr~~al~al~~l~~~~~-- 492 (1018)
+.+.++|.|++.+.+....++..|..+|..+++.++ +.+.+ ...+....++.++.+|..++..+..+....+
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 999999999999999988999999999999999875 22344 6777778888899999999999999988888
Q ss_pred -ccchh--hHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhh
Q 001749 493 -QAFIP--YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (1018)
Q Consensus 493 -~~~~~--~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~ 537 (1018)
..+.. .++.+.+.+...+.+. +..+|..|-+++..+...+|.
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~---~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDA---DPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH-H
T ss_pred HhhhcccchHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCH
Confidence 44443 3477888887777644 446788888888888777764
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=5.6e-05 Score=83.96 Aligned_cols=465 Identities=15% Similarity=0.185 Sum_probs=250.0
Q ss_pred hhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHH
Q 001749 344 VSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPC 423 (1018)
Q Consensus 344 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 423 (1018)
+++.+++...++.+.++..-+.....+. +--+...+.+-|++++..|...|+-++|+++.. +..+.+.|.
T Consensus 77 KLias~~f~dKRiGYLaamLlLdE~qdv----llLltNslknDL~s~nq~vVglAL~alg~i~s~------Emardlape 146 (866)
T KOG1062|consen 77 KLIASDNFLDKRIGYLAAMLLLDERQDL----LLLLTNSLKNDLNSSNQYVVGLALCALGNICSP------EMARDLAPE 146 (866)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccchHH----HHHHHHHHHhhccCCCeeehHHHHHHhhccCCH------HHhHHhhHH
Confidence 4567888777777777766666543322 223445677778889999999998888888743 355678888
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhc---cchhhHH
Q 001749 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ---AFIPYAE 500 (1018)
Q Consensus 424 l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~---~~~~~~~ 500 (1018)
+.+.++.+++.+|..|.-|...+++..++.+ +.+++...+.|.+.+..|-...+..+-.++...++ .|....+
T Consensus 147 Ve~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~ 222 (866)
T KOG1062|consen 147 VERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVP 222 (866)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888999999999999999999999887653 44556666677777777777777777777766543 3333334
Q ss_pred HHHHHHHHHHhccCchhh--------hhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 001749 501 RVLELLKIFMVLTNDEDL--------RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSN 572 (1018)
Q Consensus 501 ~i~~~l~~~l~~~~~~~~--------~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~ 572 (1018)
.++..|+++....=+++. -+..+.++.++.+ ..++++..+.....++.
T Consensus 223 ~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL------------------------Gq~d~daSd~M~DiLaq 278 (866)
T KOG1062|consen 223 SLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL------------------------GQNDADASDLMNDILAQ 278 (866)
T ss_pred HHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh------------------------cCCCccHHHHHHHHHHH
Confidence 445555554432211111 1233333333333 33333333333334444
Q ss_pred HHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHH
Q 001749 573 IAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQAL 652 (1018)
Q Consensus 573 l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l 652 (1018)
+++.....-.---..+...+...... .+.-..|+.|+++|
T Consensus 279 vatntdsskN~GnAILYE~V~TI~~I----------------------------------------~~~~~LrvlainiL 318 (866)
T KOG1062|consen 279 VATNTDSSKNAGNAILYECVRTIMDI----------------------------------------RSNSGLRVLAINIL 318 (866)
T ss_pred HHhcccccccchhHHHHHHHHHHHhc----------------------------------------cCCchHHHHHHHHH
Confidence 44322111000000011111111100 00113488899999
Q ss_pred HHHHHHccccCcch--HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 001749 653 GLFALHTKSSYAPF--LEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYM 730 (1018)
Q Consensus 653 ~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~ 730 (1018)
|.|..+-... ..| +..++..+.+. +..++ +-...++++++ |+|..+.+.+++-...++... -+
T Consensus 319 gkFL~n~d~N-irYvaLn~L~r~V~~d--~~avq----rHr~tIleCL~-DpD~SIkrralELs~~lvn~~-------Nv 383 (866)
T KOG1062|consen 319 GKFLLNRDNN-IRYVALNMLLRVVQQD--PTAVQ----RHRSTILECLK-DPDVSIKRRALELSYALVNES-------NV 383 (866)
T ss_pred HHHhcCCccc-eeeeehhhHHhhhcCC--cHHHH----HHHHHHHHHhc-CCcHHHHHHHHHHHHHHhccc-------cH
Confidence 9987654333 234 33444444332 22222 23344566766 889999988888777766543 34
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccc
Q 001749 731 SRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQD 810 (1018)
Q Consensus 731 ~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 810 (1018)
..+++.++..|... + ++....+...+.++.. .|.|--.-.+..+++.+....+ -+
T Consensus 384 ~~mv~eLl~fL~~~--------d--------~~~k~~~as~I~~laE--------kfaP~k~W~idtml~Vl~~aG~-~V 438 (866)
T KOG1062|consen 384 RVMVKELLEFLESS--------D--------EDFKADIASKIAELAE--------KFAPDKRWHIDTMLKVLKTAGD-FV 438 (866)
T ss_pred HHHHHHHHHHHHhc--------c--------HHHHHHHHHHHHHHHH--------hcCCcchhHHHHHHHHHHhccc-cc
Confidence 55555555555541 0 1222223333333322 2222111133344444444333 22
Q ss_pred hhhhhHhHHHHHhhcCcchHhh-HHhhHHHHHHh--cCCCChHHHHHHHHHHHHHHhhc--C---cc-hhhHHHHHHHhh
Q 001749 811 RTMVVATLAEVARDMGSPIAAY-VDRVMPLVLKE--LASPDAMNRRNAAFCVGELCKNG--G---ES-ALKYYGDILRGL 881 (1018)
Q Consensus 811 r~~a~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~--l~~~~~~vr~~a~~~lg~l~~~~--~---~~-~~~~~~~il~~L 881 (1018)
+-.++.-+-.++..+......| ...++-.+... +.-+....-+.|+|+||+..... + +. ...--..++..|
T Consensus 439 ~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l 518 (866)
T KOG1062|consen 439 NDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKL 518 (866)
T ss_pred chhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHH
Confidence 4444555555555543333333 22333333221 12344556888999999886221 1 01 111123455555
Q ss_pred hhccCCCCCCchhHhHHHHHHHHHHHhCCCCCC-hhhHHHHHHhhC
Q 001749 882 YPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP-LNQVLPVLLKVL 926 (1018)
Q Consensus 882 ~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~~-~~~~l~~~l~~l 926 (1018)
..++.....+..++.-++.|+.|+-...+...+ +.+++..+...+
T Consensus 519 ~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~~s~ 564 (866)
T KOG1062|consen 519 EKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYKSSL 564 (866)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhcccc
Confidence 555554334466777889999999888777654 666666665554
No 71
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=8.4e-06 Score=88.80 Aligned_cols=226 Identities=14% Similarity=0.222 Sum_probs=146.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccch
Q 001749 40 LVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDL 119 (1018)
Q Consensus 40 l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~l 119 (1018)
++.++ +++.|-+|+-|..++-+.+-++...+.+ ... .|-+.|. ++++.|..++..+|+.+++.. | ..+-.+
T Consensus 149 v~tLL-~sskpYvRKkAIl~lykvFLkYPeAlr~-~Fp----rL~EkLe-DpDp~V~SAAV~VICELArKn-P-knyL~L 219 (877)
T KOG1059|consen 149 VFTLL-NSSKPYVRKKAILLLYKVFLKYPEALRP-CFP----RLVEKLE-DPDPSVVSAAVSVICELARKN-P-QNYLQL 219 (877)
T ss_pred HHHHH-hcCchHHHHHHHHHHHHHHHhhhHhHhh-hHH----HHHHhcc-CCCchHHHHHHHHHHHHHhhC-C-cccccc
Confidence 34444 4557889998888887776665444433 223 3344444 699999999999999999976 4 367777
Q ss_pred HHHHHHhhcC--CChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcc-----cC
Q 001749 120 LPFLFQFSQS--EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF-----TN 192 (1018)
Q Consensus 120 l~~l~~~~~s--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~-----~~ 192 (1018)
-|.++..+.+ ++|.. ---+.+|+.+.-.-|. ....+++.+.+.+.+..-..+-. .|+..++.. .+
T Consensus 220 AP~ffkllttSsNNWmL-IKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlY---ECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVL-IKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLY---ECVNTVVAVSMSSGMS 291 (877)
T ss_pred cHHHHHHHhccCCCeeh-HHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHH---HHHHHheeehhccCCC
Confidence 7888887763 45543 3345666666433221 12345666666665511122333 333333332 21
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 001749 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQI 272 (1018)
Q Consensus 193 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~ 272 (1018)
+. ...+...++-+..++.+.|+..+..++-++..++..+++.+..+-.-++..+ . |.|+++|..|+++
T Consensus 292 d~------~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL----~--DkD~SIRlrALdL 359 (877)
T KOG1059|consen 292 DH------SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCL----D--DKDESIRLRALDL 359 (877)
T ss_pred Cc------HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHh----c--cCCchhHHHHHHH
Confidence 21 2345567777777888899999999999999999999998887766665543 3 4688999999999
Q ss_pred HHHHHHHhHHHhhhcCChHHHHHHHhhhhc
Q 001749 273 ISWLAKYKYNSLKKHKLVIPILQVMCPLLA 302 (1018)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 302 (1018)
+..++... .+..|+..++..+.
T Consensus 360 l~gmVskk--------Nl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 360 LYGMVSKK--------NLMEIVKTLMKHVE 381 (877)
T ss_pred HHHHhhhh--------hHHHHHHHHHHHHH
Confidence 99888642 33344555554443
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4.9e-06 Score=92.26 Aligned_cols=503 Identities=16% Similarity=0.146 Sum_probs=278.9
Q ss_pred CCChHHHHHHHHHHHHHhc-CCCcHHHHHHHH-hc--CCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhh
Q 001749 14 MPDNDARRQAEDQIKRLAK-DPQVVPALVQHL-RT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL 89 (1018)
Q Consensus 14 s~d~~~r~~A~~~L~~~~~-~p~~~~~l~~~l-~~--~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~ 89 (1018)
..|-+.+|-.-.++..+.+ +|+-.......+ .+ ++++.+|.+|...+...- -+.....+...+..++.
T Consensus 60 T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-------v~~i~ey~~~Pl~~~l~- 131 (734)
T KOG1061|consen 60 TRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-------VDKITEYLCDPLLKCLK- 131 (734)
T ss_pred cCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-------ehHHHHHHHHHHHHhcc-
Confidence 3344555555555554442 454322222222 22 235666666643332110 13455677778888887
Q ss_pred cCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcc-ccccHHHHHHHHHHhc
Q 001749 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-FRPHFADMQALLLKCL 168 (1018)
Q Consensus 90 e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l 168 (1018)
+.++.+|+.++.+++.+.........-..+++.+..++.++++.+...|+.++..+.+..++. .......+...++..+
T Consensus 132 d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al 211 (734)
T KOG1061|consen 132 DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL 211 (734)
T ss_pred CCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999887754322344668899999998899999999999999999876642 2222344444455555
Q ss_pred CCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHH
Q 001749 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSI 248 (1018)
Q Consensus 169 ~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l 248 (1018)
+. -+.--+...+.++ ..+.+... ....+ +++.+...++..+..+...+.+.+..+......+....+..+
T Consensus 212 ~e-c~EW~qi~IL~~l---~~y~p~d~--~ea~~----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~ 281 (734)
T KOG1061|consen 212 NE-CTEWGQIFILDCL---AEYVPKDS--REAED----ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKV 281 (734)
T ss_pred HH-hhhhhHHHHHHHH---HhcCCCCc--hhHHH----HHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 2222333444444 44443321 11122 334444445556666666777777766654444333333333
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHH
Q 001749 249 VHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL 328 (1018)
Q Consensus 249 i~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~ 328 (1018)
.+.++.+++. .+++...++.=+.-+....|..+... +.-..+... |-..+...-.+++..++.
T Consensus 282 ~~pl~tlls~---~~e~qyvaLrNi~lil~~~p~~~~~~---------~~~Ff~kyn-----DPiYvK~eKleil~~la~ 344 (734)
T KOG1061|consen 282 APPLVTLLSS---ESEIQYVALRNINLILQKRPEILKVE---------IKVFFCKYN-----DPIYVKLEKLEILIELAN 344 (734)
T ss_pred cccceeeecc---cchhhHHHHhhHHHHHHhChHHHHhH---------hHeeeeecC-----CchhhHHHHHHHHHHHhh
Confidence 3333333332 33677777776666666666543221 111112211 111233334455555543
Q ss_pred HcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001749 329 NLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (1018)
Q Consensus 329 ~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 408 (1018)
+..++.++..+.++-..-+..--..+++++|.++-...+. ...++.++..++-....|.+.++..+..+...
T Consensus 345 ---~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 345 ---DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred ---HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 3344556666666666777777778899999988765433 46777888888755556666667777776666
Q ss_pred cCHHHHHhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 001749 409 LQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (1018)
Q Consensus 409 ~~~~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l 487 (1018)
++. .++.+++.+...+..- +|+.|.+-.|.++...+..++ .+.++..+++.+.+....|+...+.+.-.+
T Consensus 417 yP~----~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ik~ 487 (734)
T KOG1061|consen 417 YPN----KYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQLELLTAAIKL 487 (734)
T ss_pred CCC----chhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 543 2244555554444432 357888889999988887655 567788888888888888888777776665
Q ss_pred HHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHH---HHhccC-CCChhHH
Q 001749 488 AAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEA---AISGFG-LEFSELR 563 (1018)
Q Consensus 488 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~---l~~~l~-~~~~~~~ 563 (1018)
....+..-...+.. .|.......++ ..+|.+++.....+. .|+.. +..++.. ++.... .-++.+.
T Consensus 488 Fl~~p~~tq~~l~~---vL~~~~~d~~~--~dlrDr~l~Y~RlLs--~~~~~----a~~v~~~~kP~is~~~~~~~p~~l 556 (734)
T KOG1061|consen 488 FLKKPTETQELLQG---VLPLATADTDN--PDLRDRGLIYWRLLS--EDPLI----AKDVVLAEKPLISEETDSLDPTLL 556 (734)
T ss_pred HhcCCccHHHHHHH---HHhhhhccccC--hhhhhhHHHHHHHhh--cCHHH----HHHHHhcCCCccccCCCCCCchHH
Confidence 44443322222222 22222333333 345666665444443 12110 0011000 000011 1256666
Q ss_pred HHHHHHHHHHHHHccc
Q 001749 564 EYTHGFFSNIAGVLED 579 (1018)
Q Consensus 564 ~~~~~~l~~l~~~~~~ 579 (1018)
+..+.=+++++.++.+
T Consensus 557 e~l~~~i~tlssVY~K 572 (734)
T KOG1061|consen 557 EELLCDIGTLSSVYHK 572 (734)
T ss_pred HHHHHhhccccceeec
Confidence 7777777777766654
No 73
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.3e-07 Score=90.35 Aligned_cols=446 Identities=14% Similarity=0.129 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHhcCC--CcH----HHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcCC
Q 001749 19 ARRQAEDQIKRLAKDP--QVV----PALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHS 92 (1018)
Q Consensus 19 ~r~~A~~~L~~~~~~p--~~~----~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~~ 92 (1018)
.|......|+.+.... +|. ..-+.++.-+.+...+.-|++.+--.+.+.-...+.+..+.+ +-.+. ..+
T Consensus 24 erEav~~ll~~lEd~~~i~fyS~~plraltvL~ySDnlnlqrsaalafAeitek~vr~Vsres~epv----l~llq-s~d 98 (550)
T KOG4224|consen 24 EREAVADLLNRLEDRNAISFYSASPLRALTVLKYSDNLNLQRSAALAFAEITEKGVRRVSRESNEPV----LALLQ-SCD 98 (550)
T ss_pred hHHHHHHHHHhhcccccccccCCCccchheeeeeccccccchHHHHHHHHHHHHHHHHhhhhhhhHH----HHHHh-Ccc
Confidence 4555555555555421 221 122333443444444445555544444333223333333322 23333 488
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCc---cchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcccc-ccHHHHHHHHHHhc
Q 001749 93 APVRRASANVVSIIAKYAVPAGEW---PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-PHFADMQALLLKCL 168 (1018)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~~~~w---~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l 168 (1018)
+.+...++..++.++......+.. ..+-+.+.+.+. ++...+..+..|+..+......... .+... +..+.. |
T Consensus 99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt-d~vevqcnaVgCitnLaT~d~nk~kiA~sGa-L~pltr-L 175 (550)
T KOG4224|consen 99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT-DGVEVQCNAVGCITNLATFDSNKVKIARSGA-LEPLTR-L 175 (550)
T ss_pred hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC-CCcEEEeeehhhhhhhhccccchhhhhhccc-hhhhHh-h
Confidence 999999999999887654332222 333345566554 4456677788888888754221111 11222 334445 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC--CccchhHhHH
Q 001749 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES--PAPLLGDSVK 246 (1018)
Q Consensus 169 ~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~ 246 (1018)
....+..||..+..++.++....+... ...-..-+|.++.. +..++.+++..|+..+..++-. ..+.+.+.=|
T Consensus 176 akskdirvqrnatgaLlnmThs~EnRr-~LV~aG~lpvLVsl----l~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 176 AKSKDIRVQRNATGALLNMTHSRENRR-VLVHAGGLPVLVSL----LKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred cccchhhHHHHHHHHHHHhhhhhhhhh-hhhccCCchhhhhh----hccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 443788999999999988765443211 11113456666664 6778999999999999887643 2333433334
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHH--hhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHH
Q 001749 247 SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS--LKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVID 324 (1018)
Q Consensus 247 ~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~--~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~ 324 (1018)
.+++.+.+++.++ ++.++.+|-..+..++...... +...+- +|.++.++..+. ...--+...|+.
T Consensus 251 ~lv~~Lv~Lmd~~--s~kvkcqA~lALrnlasdt~Yq~eiv~ag~----lP~lv~Llqs~~-------~plilasVaCIr 317 (550)
T KOG4224|consen 251 KLVPALVDLMDDG--SDKVKCQAGLALRNLASDTEYQREIVEAGS----LPLLVELLQSPM-------GPLILASVACIR 317 (550)
T ss_pred chHHHHHHHHhCC--ChHHHHHHHHHHhhhcccchhhhHHHhcCC----chHHHHHHhCcc-------hhHHHHHHHHHh
Confidence 4666666666544 6778888877777776422111 111122 344444553221 111223345666
Q ss_pred HHHHHcchhch---HHHHHHHHhhhc-CCChhHHHHHHHHHHHHhhcChHHHHHhH-HHHHHHHHhhcCCCChhHHHHHH
Q 001749 325 TMALNLAKHVF---PPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAAS 399 (1018)
Q Consensus 325 ~l~~~~~~~~~---~~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~Vr~~a~ 399 (1018)
.++-+-+...+ .-++.-+...+. .++...+.+|...+..++........... ...+|.+...+.|....||....
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 66654442221 112222333343 33445778888888777764332222221 13467777778899999999888
Q ss_pred HHHHHhHhhcCHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcc------ccccchHHHHHHHHHhhcC
Q 001749 400 FALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE------EILPFLDPLMGKLLAALEN 471 (1018)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~------~~~~~~~~l~~~l~~~l~~ 471 (1018)
.|++.++-. ...+.++ ..++|.|+..+.+.+.+||..++.+|.+|++.... ....-.+.+-..|...+.+
T Consensus 398 ac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S 475 (550)
T KOG4224|consen 398 ACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLAS 475 (550)
T ss_pred HHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 888888754 2333333 47889999999999999999999999999876532 2222235667777777777
Q ss_pred CCHhHHHHHHHHHHHHHHHhh
Q 001749 472 SPRNLQETCMSAIGSVAAAAE 492 (1018)
Q Consensus 472 ~~~~vr~~al~al~~l~~~~~ 492 (1018)
....++.-+..+|-.+...-.
T Consensus 476 ~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 476 HELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred hHHHHHHHHHHHHHHHHHhCC
Confidence 777788888887777765543
No 74
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.86 E-value=9.6e-08 Score=97.28 Aligned_cols=185 Identities=16% Similarity=0.188 Sum_probs=134.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHc-c----hhchHHH---HHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHH
Q 001749 310 DDDLAPDRAAAEVIDTMALNL-A----KHVFPPV---FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLH 381 (1018)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~-~----~~~~~~~---~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~ 381 (1018)
+.+|..|..+...|..+.... + ..+++.+ +..+...+.+.....-..|+.+++.++......+.++.+.++|
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 567999999999999988765 2 2222222 2344456667677788899999999999988889999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhH-HHHHHHhccCCChHHHHHHHHHHHHHHhhhc---ccccc-
Q 001749 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV-LPCILNALEDESDEVKEKSYYALAAFCEDMG---EEILP- 456 (1018)
Q Consensus 382 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~-l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~---~~~~~- 456 (1018)
.+++.+.|++..+|.+|..++..++..++ +.+.+ ++.+...+.+.++.+|..++..+..++...+ ..+..
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999999999999999999999875 22345 7777888999999999999999999999987 44443
Q ss_pred -chHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH
Q 001749 457 -FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA 499 (1018)
Q Consensus 457 -~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~ 499 (1018)
.++.+.+.+...+++.++.||..|-.++..+....|+.....+
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 3588999999999999999999999999999888776544333
No 75
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.85 E-value=0.00051 Score=77.77 Aligned_cols=130 Identities=20% Similarity=0.283 Sum_probs=105.8
Q ss_pred HHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCC
Q 001749 767 VIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELAS 846 (1018)
Q Consensus 767 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 846 (1018)
..+..+..+++.+.+ +...|.++.++|.++..|.-... ..|..++.++..++...+.-...|+..++|.++..=.+
T Consensus 886 ~yl~~LshVl~~vP~---~vllp~~~~LlPLLLq~Ls~~D~-~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~ 961 (1030)
T KOG1967|consen 886 NYLEALSHVLTNVPK---QVLLPQFPMLLPLLLQALSMPDV-IVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSD 961 (1030)
T ss_pred HHHHHHHHHHhcCCH---HhhccchhhHHHHHHHhcCCCcc-chhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCC
Confidence 455555555553332 46778999999999999987765 56999999999999988888899999999999987666
Q ss_pred CC---hHHHHHHHHHHHHHHhhcCc-chhhHHHHHHHhhhhccCCCCCCchhHhHHHHHH
Q 001749 847 PD---AMNRRNAAFCVGELCKNGGE-SALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAV 902 (1018)
Q Consensus 847 ~~---~~vr~~a~~~lg~l~~~~~~-~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al 902 (1018)
.+ ..||..|..+++.+.+..|. ...+|-++++++|.+.+.+++ +.+|.-|+.+=
T Consensus 962 ~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK--RlVR~eAv~tR 1019 (1030)
T KOG1967|consen 962 NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK--RLVRKEAVDTR 1019 (1030)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH--HHHHHHHHHHh
Confidence 65 67999999999999997664 568899999999999997543 77888877763
No 76
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.83 E-value=0.00094 Score=79.67 Aligned_cols=161 Identities=18% Similarity=0.236 Sum_probs=117.8
Q ss_pred HHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHH
Q 001749 320 AEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAA 398 (1018)
Q Consensus 320 ~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a 398 (1018)
......++...+ ...+...+..+...+..+....|.-|+.|++.+.+.-+..+. .+.+-..+-..+.|.+..||.+|
T Consensus 798 ~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAa 875 (1692)
T KOG1020|consen 798 KLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAA 875 (1692)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHH
Confidence 344444554444 455667777777788889999999999999999998664432 24566678888999999999999
Q ss_pred HHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHH
Q 001749 399 SFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQE 478 (1018)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~ 478 (1018)
+..+|++.-..+..+.+|+. .+.+.+.|..-.||.+++..+..+|+..++. +-...++..++.-.++...+++.
T Consensus 876 ldLvGrfvl~~~e~~~qyY~----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~k 949 (1692)
T KOG1020|consen 876 LDLVGRFVLSIPELIFQYYD----QIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKK 949 (1692)
T ss_pred HHHHhhhhhccHHHHHHHHH----HHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHH
Confidence 99999998876554444554 5556678888899999999999999998762 12334555555555666666777
Q ss_pred HHHHHHHHHH
Q 001749 479 TCMSAIGSVA 488 (1018)
Q Consensus 479 ~al~al~~l~ 488 (1018)
-+..++-.+.
T Consensus 950 Lv~etf~klW 959 (1692)
T KOG1020|consen 950 LVRETFLKLW 959 (1692)
T ss_pred HHHHHHHHHh
Confidence 7776665553
No 77
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.82 E-value=0.00011 Score=78.15 Aligned_cols=248 Identities=13% Similarity=0.136 Sum_probs=123.0
Q ss_pred cHHHHHHHHHHHHHHHc-chhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHH-------------------
Q 001749 314 APDRAAAEVIDTMALNL-AKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK------------------- 373 (1018)
Q Consensus 314 ~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~------------------- 373 (1018)
.+.-.+++.+-.++... +.+.+.+.+..+..++++.....|.+|++.+..++...+..+.
T Consensus 279 mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~Ist 358 (898)
T COG5240 279 MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTIST 358 (898)
T ss_pred hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchH
Confidence 34455667777777655 7778888889999999999999999999999999876442110
Q ss_pred ------------HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHH
Q 001749 374 ------------EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYY 441 (1018)
Q Consensus 374 ------------~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~ 441 (1018)
..++.++..|...+.|-+..-+..+..++..++-.++.....++.-+...|.. ...-+.+..+..
T Consensus 359 yAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~---eGg~eFK~~~Vd 435 (898)
T COG5240 359 YAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ---EGGLEFKKYMVD 435 (898)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh---cccchHHHHHHH
Confidence 11223333333333332222222333344444444433222222222222221 222233444444
Q ss_pred HHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccch--hhHHHHHHHHHHHHhccCchhhh
Q 001749 442 ALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAERVLELLKIFMVLTNDEDLR 519 (1018)
Q Consensus 442 al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~ 519 (1018)
++..+++..++. -+..+..|+..+.+. +..+-++..++.+.+..+..-. .|...+...+. + +...
T Consensus 436 aisd~~~~~p~s----kEraLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--L-----EN~i 502 (898)
T COG5240 436 AISDAMENDPDS----KERALEVLCTFIEDC--EYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI--L-----ENNI 502 (898)
T ss_pred HHHHHHhhCchH----HHHHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--H-----hhhH
Confidence 444444433221 112233333333321 1222233333333333332211 23333322211 1 2234
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCChHH-HHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCccc
Q 001749 520 SRARATELLGLVAESVGRARMEPILPP-FVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQ 583 (1018)
Q Consensus 520 ~r~~a~~~l~~l~~~~g~~~~~~~~~~-l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 583 (1018)
+|..|+.|++.++-... .+..++ +...+-.++++.|+++|+.+--++..|- ..+.+.|
T Consensus 503 vRsaAv~aLskf~ln~~----d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~--~~da~~p 561 (898)
T COG5240 503 VRSAAVQALSKFALNIS----DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR--LSDACEP 561 (898)
T ss_pred HHHHHHHHHHHhccCcc----ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh--hhhhhhc
Confidence 68888888888775432 234443 3444555777778899998766666554 3344444
No 78
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.82 E-value=2e-08 Score=81.73 Aligned_cols=66 Identities=36% Similarity=0.613 Sum_probs=61.8
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhc--------cCCHHHHHHHHHHHHHHHh
Q 001749 23 AEDQIKRLAKD-PQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWA--------KLSPQLKQLVKQSLIESIT 88 (1018)
Q Consensus 23 A~~~L~~~~~~-p~~~~~l~~~l~~-~~~~~~R~~a~~~l~~~i~~~w~--------~l~~~~~~~i~~~Ll~~l~ 88 (1018)
||++|+++.++ |+|+..|++++.+ +.++.+|++|+++||+.|.++|. .++++.+..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999998 9999999999966 45899999999999999999999 9999999999999999885
No 79
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.80 E-value=4.1e-07 Score=104.20 Aligned_cols=298 Identities=17% Similarity=0.156 Sum_probs=191.5
Q ss_pred hHHHHHHhhcCC-ChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCC--hh
Q 001749 119 LLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND--GA 195 (1018)
Q Consensus 119 ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~--~~ 195 (1018)
+++.+..++++- ....+..|+.++..+.....++ ..++.++|.+..++.| +...||..|+.++..++....+ +.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcc
Confidence 466666666652 3466778899998888776653 4578999999999999 9999999999999998765532 12
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHhcCCccchhHhHHHHHH-HHHHHhcCCCCChHHHHHH-HHH
Q 001749 196 EVVKFREFIPSILNVSRQCLASGE-EDVAVIAFEIFDELIESPAPLLGDSVKSIVH-FSLEVSSSHNLEPNTRHQA-IQI 272 (1018)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~-~l~~~~~~~~~~~~~r~~a-~~~ 272 (1018)
+...|.++ ++..+...+.+.+ ..++..-..+|..++.....|+.... .+-. .+..-..++ ...+-+..+ ...
T Consensus 500 daniF~eY---lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q-~~~~~g~~n~~nse-t~~~~~~~~~~~~ 574 (1431)
T KOG1240|consen 500 DANIFPEY---LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQ-ELRQAGMLNDPNSE-TAPEQNYNTELQA 574 (1431)
T ss_pred cchhhHhh---hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHH-HHHhcccccCcccc-cccccccchHHHH
Confidence 23334333 3333333455533 34555566788888765444332111 1100 011000000 000000000 000
Q ss_pred HHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCCh
Q 001749 273 ISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASP 351 (1018)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~ 351 (1018)
....+-.....++.+. +..++++-.+.+..|+..+| ...-..+++++..++++.+|
T Consensus 575 ----------------L~~~V~~~v~sLlsd~-------~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw 631 (1431)
T KOG1240|consen 575 ----------------LHHTVEQMVSSLLSDS-------PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDW 631 (1431)
T ss_pred ----------------HHHHHHHHHHHHHcCC-------chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccH
Confidence 1111222223333332 23577787888999999999 44556788999999999999
Q ss_pred hHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHH-HHhhhhHHHHHHHhccC
Q 001749 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI-VSHYESVLPCILNALED 430 (1018)
Q Consensus 352 ~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~~l~~ 430 (1018)
+.|.+-...+.-++-..... ..-+-++|.+..+|.|+.+.|-..|+.++..+++.- .+ ++++..++..+...|-.
T Consensus 632 ~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~h 707 (1431)
T KOG1240|consen 632 RLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCH 707 (1431)
T ss_pred HHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeC
Confidence 99999887776555433221 012347899999999999999999999999998752 22 35667777788888888
Q ss_pred CChHHHHHHHHHHHHHHhhhc
Q 001749 431 ESDEVKEKSYYALAAFCEDMG 451 (1018)
Q Consensus 431 ~~~~v~~~a~~al~~l~~~~~ 451 (1018)
|+.=+|..+|..+....+.++
T Consensus 708 PN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 708 PNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred chHHHHHHHHHHHHHHHhhhh
Confidence 998899999999999988875
No 80
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.78 E-value=4.3e-08 Score=81.57 Aligned_cols=87 Identities=21% Similarity=0.338 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCC
Q 001749 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (1018)
Q Consensus 394 Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 473 (1018)
.|..++.+|+.++..++..+.+|++.++|.++.++.|++++||..||.+|.++++..++.+.+|++++++.|.+.+.+++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 47889999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HhHHHHH
Q 001749 474 RNLQETC 480 (1018)
Q Consensus 474 ~~vr~~a 480 (1018)
..||..|
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 9999877
No 81
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.77 E-value=1.9e-06 Score=94.06 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=102.4
Q ss_pred ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhc--cCchhhhhHHHHHHHH
Q 001749 451 GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL--TNDEDLRSRARATELL 528 (1018)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~~~~r~~a~~~l 528 (1018)
++.+.|+...++..|+..+..+...-.+..++|+-++....++...|+...+++.|...+.. .+..+.+.-...++++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 45688999999999999998866566788999999999999999999999988888777652 2333344566889999
Q ss_pred HHHHHhhhhh---hcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcc-cCcccchhhhhHHHHh
Q 001749 529 GLVAESVGRA---RMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAFS 594 (1018)
Q Consensus 529 ~~l~~~~g~~---~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll~ 594 (1018)
+.+.+.+... ....+-+.+++.+...++.+-.+...++++.++.+.+..+ ..+.+....++|.++.
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~ 166 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLS 166 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTS
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcC
Confidence 9998865432 2233445556666666676667888888999988888877 5666667777777763
No 82
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=0.00042 Score=76.11 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=96.8
Q ss_pred HHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHH
Q 001749 99 SANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRI 178 (1018)
Q Consensus 99 ~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~ 178 (1018)
+-..++.|...+ ---++-+.++.++.+..+-.|..|..++..++..+++.+.+.+ |-+..-|.| +++.|..
T Consensus 129 AL~GLS~fvTpd----LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~F----prL~EkLeD-pDp~V~S 199 (877)
T KOG1059|consen 129 ALSGLSCIVTPD----LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCF----PRLVEKLED-PDPSVVS 199 (877)
T ss_pred eecccccccCch----hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhH----HHHHHhccC-CCchHHH
Confidence 334445554433 3356778888999999999999999999999988887766555 455567888 9999999
Q ss_pred HHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHH
Q 001749 179 AALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFS 252 (1018)
Q Consensus 179 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l 252 (1018)
+|+..++.++...+.+ +-.+-|.+..++.. ..+.=+....++.+..+....|.+-+..++.+.+++
T Consensus 200 AAV~VICELArKnPkn-----yL~LAP~ffklltt---SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li 265 (877)
T KOG1059|consen 200 AAVSVICELARKNPQN-----YLQLAPLFYKLLVT---SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELM 265 (877)
T ss_pred HHHHHHHHHHhhCCcc-----cccccHHHHHHHhc---cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHH
Confidence 9999999999877643 34566766665422 222224455677778877777776666666665543
No 83
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.61 E-value=0.0002 Score=74.63 Aligned_cols=454 Identities=17% Similarity=0.221 Sum_probs=246.5
Q ss_pred CHHHHHHHHHHHHHHHcccCC---CCCccchHHHH---------HHhhcCCChHHHHHHHHHHHHhhhhhh---------
Q 001749 92 SAPVRRASANVVSIIAKYAVP---AGEWPDLLPFL---------FQFSQSEQEEHREVALILFSSLTETIG--------- 150 (1018)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~---~~~w~~ll~~l---------~~~~~s~~~~~r~~al~~l~~l~~~~~--------- 150 (1018)
...||..+-.++......... -+.|.-++|.- .-.+++++++.|..|++++..+.+...
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 345666666666554432100 15776666542 223567888999999999999886543
Q ss_pred --ccccccH-------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHH
Q 001749 151 --QTFRPHF-------ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221 (1018)
Q Consensus 151 --~~~~~~~-------~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 221 (1018)
..|.++. -.+...++..|..+.++.+-...++|+..+++..+- +..+ -.++..+++.+...+...|+.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~--~~l~-~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPY--DRLK-LSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCch--HHHH-HHHHHHHHHHHHHHhhcCCCC
Confidence 2233322 233344555555446777888999999999987752 2222 346677778888888889999
Q ss_pred HHHHHHHHHHHHhcCCccchh----------------HhH--HH---------------------------HHHHHH---
Q 001749 222 VAVIAFEIFDELIESPAPLLG----------------DSV--KS---------------------------IVHFSL--- 253 (1018)
Q Consensus 222 ~~~~a~~~l~~l~~~~~~~~~----------------~~~--~~---------------------------li~~l~--- 253 (1018)
++..++..+..++..+...-+ +|. ++ +++.+.
T Consensus 166 v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeee
Confidence 999999888888764321100 000 00 111100
Q ss_pred --------------HHhcCCCCChHHHHHHHHHHHHHHHHhHHH----------hh-hcC--------ChHHHHHHHhhh
Q 001749 254 --------------EVSSSHNLEPNTRHQAIQIISWLAKYKYNS----------LK-KHK--------LVIPILQVMCPL 300 (1018)
Q Consensus 254 --------------~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~----------~~-~~~--------~~~~i~~~l~~~ 300 (1018)
..+........+|..++..+..++.+.+-. +. ..+ +...++..+..-
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~ 325 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTG 325 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHH
Confidence 111111122347888888887777654321 00 000 111222222211
Q ss_pred hc-cCCCC-----------------------CCC-CCCcHHHHHHHHHHHHHH----HcchhchHHHHHHHHhhhcCCCh
Q 001749 301 LA-ESNEA-----------------------GED-DDLAPDRAAAEVIDTMAL----NLAKHVFPPVFEFASVSCQNASP 351 (1018)
Q Consensus 301 l~-~~~~d-----------------------~~d-~~~~~~~~a~~~l~~l~~----~~~~~~~~~~~~~l~~~l~~~~~ 351 (1018)
+. +...+ .+| .-.++...+...+..+.. .+++.--...+-++..+-.+.+-
T Consensus 326 lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~ 405 (728)
T KOG4535|consen 326 LIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNR 405 (728)
T ss_pred HhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHH
Confidence 11 11100 000 112333334444444431 22221000111112222234555
Q ss_pred hHHHHHHHHHHHHhhc-ChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCH---H---HH-HhhhhHHHH
Q 001749 352 KYREAAVTAIGIISEG-CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP---E---IV-SHYESVLPC 423 (1018)
Q Consensus 352 ~~r~aal~~l~~l~~~-~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~---~~-~~~~~~l~~ 423 (1018)
-+|.+|+++.+...-+ +......+.......++..+.|....+|..++|++|.+...+.. . .. ......+..
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 6777888877765533 33444456677788888999999999999999999999876521 1 11 122233333
Q ss_pred HHHhcc---CCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhc-----CCCHhHHHHHHHHHHHHHHHhhc--
Q 001749 424 ILNALE---DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE-----NSPRNLQETCMSAIGSVAAAAEQ-- 493 (1018)
Q Consensus 424 l~~~l~---~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~-----~~~~~vr~~al~al~~l~~~~~~-- 493 (1018)
++..-. -...+|+.++..+|+++......-..+-+..+++.-...+- ....+||-+++.++|.+.+.-.-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 332221 12357999999999999887654334444444444333322 23578999999999999865432
Q ss_pred cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHh
Q 001749 494 AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (1018)
Q Consensus 494 ~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~ 553 (1018)
.-.++.+.+++.|..++....+ ..+|.+|..++...+. ++.+..+.+-....++.
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~N--FKVRi~AA~aL~vp~~---re~~~d~~~Lsw~~lv~ 620 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKN--FKVRIRAAAALSVPGK---REQYGDQYALSWNALVT 620 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhcc--ceEeehhhhhhcCCCC---cccchhHHhHHHHHHHH
Confidence 2246778889988888765432 3344444443333222 33444444433344433
No 84
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.58 E-value=0.0097 Score=77.09 Aligned_cols=498 Identities=14% Similarity=0.192 Sum_probs=245.3
Q ss_pred hhcCCCChhHHHHHHHHHHHhHhhcCH------HHHHhhhhHHHHHHH-hccCCChHHHHHHHHHHHHHHhhhccccccc
Q 001749 385 GALRDPEQFVRGAASFALGQFAEYLQP------EIVSHYESVLPCILN-ALEDESDEVKEKSYYALAAFCEDMGEEILPF 457 (1018)
Q Consensus 385 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~~~~l~~l~~-~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 457 (1018)
..+...+..+|..+..++..+..+... ...++...++..+.. ++.++++.++.+....+. +.+...+ -
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~l--a 562 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQL--A 562 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhh--c
Confidence 344566888888887666666554322 111234444444443 334566666655544444 1111111 1
Q ss_pred hHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHH--HHHHHHHHhh
Q 001749 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARAT--ELLGLVAESV 535 (1018)
Q Consensus 458 ~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~--~~l~~l~~~~ 535 (1018)
-+..+..++..+.+.....+..+...+|.++...+..+.|++........+-+.-+. -.+.+..+- .+....+
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg--~~r~~~~~a~~~~~~i~~--- 637 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSG--MARTKEESAKLLCELIIS--- 637 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcc--hHHhHHHHHHHhhHHHHH---
Confidence 124555577777778888999999999988887776666666544433322222110 001111111 1111111
Q ss_pred hhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcc
Q 001749 536 GRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENIN 615 (1018)
Q Consensus 536 g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~ 615 (1018)
.+..+.+|..+++..++..+.+.++.+-..+..+.+.||.+.|.+...+....++.+.+.+....+.. ...-......
T Consensus 638 ~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~--rr~aslk~l~ 715 (2341)
T KOG0891|consen 638 SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLG--KRLAALKALG 715 (2341)
T ss_pred HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhh--chhHHHHHhh
Confidence 12346788888888888878877777788899999999999998887777766666666654221100 0000000000
Q ss_pred cC---CCCCCCcc-hhhccccccee-eecccc-hhHHHHHHHHHHHHHHccccCcchHHHHHHHh---h----cCCC---
Q 001749 616 GF---GGVSSDDE-AHCERSVRNIS-VRTGVL-DEKAAATQALGLFALHTKSSYAPFLEESLKIL---S----HNEG--- 679 (1018)
Q Consensus 616 ~~---~~~~~~~~-~~~~~~~~~~~-i~t~~~-~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l---~----~~~~--- 679 (1018)
.. .++..+.. +.+......+. ..|... ..+..+++.++. -.+.-||........ . ....
T Consensus 716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~-----~g~~d~~~~~~~~~~~~~~~~~~~~k~~~~ 790 (2341)
T KOG0891|consen 716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGL-----LGALDPYKHKVTEGTSASKISSEQIKSDID 790 (2341)
T ss_pred hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh-----hcccchhHHHHHhhhhhHhhhhccccccch
Confidence 00 00000000 00000000000 001000 234444444442 123445544333221 0 0000
Q ss_pred hh--------HHHHHHHH-HHHHHHHHHhhCCcHH----------------------HHHHHHHHHHHHHHHhCCcccHH
Q 001749 680 PA--------KAREILDT-VMNIFIRTMTEDDDKD----------------------VVAQACTSIVEIINDYGYMAVEP 728 (1018)
Q Consensus 680 ~~--------~~~~~~~~-~~~~l~~~l~~e~~~~----------------------~~~~~~~~l~~~i~~~g~~~~~~ 728 (1018)
.. ...+.+.. .+..+...+++..... .+..++..+....+..+.....-
T Consensus 791 ~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f 870 (2341)
T KOG0891|consen 791 ISLLESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREF 870 (2341)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHH
Confidence 00 00111100 0111111111111111 12223333333333332221000
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCc
Q 001749 729 YMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPL 808 (1018)
Q Consensus 729 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 808 (1018)
+..... +.......+..+ ..+.-...-.+-......++.++..++..+...++..|..+.+..++..+......++
T Consensus 871 ~~~q~~--~~~~~~~~h~~~-~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s- 946 (2341)
T KOG0891|consen 871 YFQQLT--SLVAIVRQHIRP-YMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKS- 946 (2341)
T ss_pred HHHhhh--hhhhccchhHhh-hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeeccccc-
Confidence 000000 000000000000 0000000000001123345566677888889999999999999988877766644443
Q ss_pred cchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccC
Q 001749 809 QDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASP--DAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFG 886 (1018)
Q Consensus 809 ~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~ 886 (1018)
..|.........+... |.....|.+-+.|.+++.+.+. ...++..+...++.++... ++..+...+.+.+++.+.
T Consensus 947 ~~~~~~~~~~~~~~~~-~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~--~~~~~~s~i~~~~~r~l~ 1023 (2341)
T KOG0891|consen 947 KDRVVSRKVLQSLQKF-GSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQV--DLSEYASRIIHPLVRVLS 1023 (2341)
T ss_pred chHHHHHHhhHHHHhc-CccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhh--HHHHHHHHHHHHHHHhhc
Confidence 3355555555555554 6777888889999999999877 6788999999999998865 455677788888877776
Q ss_pred CCCCCchhHhHHHHHHHHHHHhC
Q 001749 887 DSEPDDAVRDNAAGAVARMIMVN 909 (1018)
Q Consensus 887 ~~~~~~~~~~na~~al~~l~~~~ 909 (1018)
.. ..++....-.++.+....
T Consensus 1024 ~s---~el~~~~~~~l~~l~~~~ 1043 (2341)
T KOG0891|consen 1024 SS---PELRDVIMDTLIALVKQL 1043 (2341)
T ss_pred cc---hhHHHHHHHHHHHHHHhh
Confidence 43 455666666666666553
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.56 E-value=1.4e-05 Score=92.05 Aligned_cols=300 Identities=17% Similarity=0.198 Sum_probs=195.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC---
Q 001749 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP--- 237 (1018)
Q Consensus 161 ~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--- 237 (1018)
++++..++..-.....|.+|+..+..+..+..+ ..++..++|.++. ++.++..+++..|++.|.+++..-
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~----l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVH----LLMDSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHH----HhcCchHHHHHHHHHHHHHHHhhccCC
Confidence 455566665434567899999999999998865 3345556776666 477888999999999999887532
Q ss_pred ccchhHhHHH-HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHH-HHhhhhccCCCCCCCCCCcH
Q 001749 238 APLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ-VMCPLLAESNEAGEDDDLAP 315 (1018)
Q Consensus 238 ~~~~~~~~~~-li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~-~l~~~l~~~~~d~~d~~~~~ 315 (1018)
++.=...+++ +++.+-.+..+. ....+|..-...+..+++...++... ... -...++.+.+.+ ..-...
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~tA~rFle~------~q~~~~~g~~n~~nse--t~~~~~ 567 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAKTAYRFLEL------TQELRQAGMLNDPNSE--TAPEQN 567 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccC-ccceehhhHHhhHHHHHHHHHHHHHH------HHHHHhcccccCcccc--cccccc
Confidence 1111122222 222222233321 34456766667777777655543210 000 000112211110 000000
Q ss_pred HHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHH
Q 001749 316 DRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVR 395 (1018)
Q Consensus 316 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr 395 (1018)
.....+. +...+-+.+..++.++..-+|.+.+..++-++..+.+. ..-+-+++.++..|+|.++..|
T Consensus 568 ~~~~~~~-----------L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR 634 (1431)
T KOG1240|consen 568 YNTELQA-----------LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLR 634 (1431)
T ss_pred cchHHHH-----------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHH
Confidence 1111111 12223344456677888899999998888888765432 1235688999999999999999
Q ss_pred HHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcccc-ccchHHHHHHHHHhhcCCCH
Q 001749 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI-LPFLDPLMGKLLAALENSPR 474 (1018)
Q Consensus 396 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~ 474 (1018)
.+-+..|.-++-..+.. ..-+.++|.+..+|.|+.+.|-..|+.++..+++.. .+ .+++-++++....+|-.++.
T Consensus 635 ~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hPN~ 710 (1431)
T KOG1240|consen 635 GAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHPNL 710 (1431)
T ss_pred HHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCchH
Confidence 99998888887777653 223468899999999999999999999999999864 12 36777888888889999999
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 001749 475 NLQETCMSAIGSVAAAAEQ 493 (1018)
Q Consensus 475 ~vr~~al~al~~l~~~~~~ 493 (1018)
=+|..++.-|..++.....
T Consensus 711 WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 711 WIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 9999999999988877653
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00064 Score=76.01 Aligned_cols=504 Identities=15% Similarity=0.135 Sum_probs=279.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcC-CCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHH
Q 001749 7 LLLIQFLMPDNDARRQAEDQIKRLAKD-PQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSL 83 (1018)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~~~~~-p~~~~~l~~~l~~--~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~L 83 (1018)
.+-+++.|.-++.|+.|-+..-..-.- .+.-..+-.++.. ..+.+.+++.-.++.++-.. |. ...-...+.+
T Consensus 17 elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~-~P----~~a~~avnt~ 91 (734)
T KOG1061|consen 17 ELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG-KP----DLAILAVNTF 91 (734)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc-Cc----hHHHhhhhhh
Confidence 344444444446777776665443332 3332223333322 34688999999999887443 22 2233334455
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHH
Q 001749 84 IESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQAL 163 (1018)
Q Consensus 84 l~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~ 163 (1018)
+.... ++++.+|..+.+.++.+-. + +.|..+..-+..++++.++-.|..+..+...+....++.. +-..+++.
T Consensus 92 ~kD~~-d~np~iR~lAlrtm~~l~v---~-~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~--~~~gl~~~ 164 (734)
T KOG1061|consen 92 LKDCE-DPNPLIRALALRTMGCLRV---D-KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV--EDSGLVDA 164 (734)
T ss_pred hccCC-CCCHHHHHHHhhceeeEee---h-HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc--cccchhHH
Confidence 55555 5899999888777665432 2 3677788889999999999999999888888765544432 23456777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhH
Q 001749 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (1018)
Q Consensus 164 l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 243 (1018)
+...+.| +++.|-..|+.++..+.+..++.. .-.+.+.++..+...++ +..-.+-+.+|..++...++-- .
T Consensus 165 L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~~~----~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~d~-~ 235 (734)
T KOG1061|consen 165 LKDLLSD-SNPMVVANALAALSEIHESHPSVN----LLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPKDS-R 235 (734)
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHHHhCCCCC----cccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCCCc-h
Confidence 7788888 899999999999999887664311 11233444443322332 2222334455566655444321 2
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHH
Q 001749 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVI 323 (1018)
Q Consensus 244 ~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l 323 (1018)
-...+++.+...+.+ ....+-..+..++.......+.... .+...+-+.++.++.... .....+..-+
T Consensus 236 ea~~i~~r~~p~Lqh--~n~avvlsavKv~l~~~~~~~~~~~--~~~~K~~~pl~tlls~~~--------e~qyvaLrNi 303 (734)
T KOG1061|consen 236 EAEDICERLTPRLQH--ANSAVVLSAVKVILQLVKYLKQVNE--LLFKKVAPPLVTLLSSES--------EIQYVALRNI 303 (734)
T ss_pred hHHHHHHHhhhhhcc--CCcceEeehHHHHHHHHHHHHHHHH--HHHHHhcccceeeecccc--------hhhHHHHhhH
Confidence 233444444433332 2333444455555555443332100 012222222222222111 2233333444
Q ss_pred HHHHHHcchhchH-HHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 001749 324 DTMALNLAKHVFP-PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFAL 402 (1018)
Q Consensus 324 ~~l~~~~~~~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l 402 (1018)
..+....++ .+. .+.-+..++ +++ ...+..-+.++-.++.. ..+.+++.-+..+-.+-+......+.+++
T Consensus 304 ~lil~~~p~-~~~~~~~~Ff~ky-nDP-iYvK~eKleil~~la~~------~nl~qvl~El~eYatevD~~fvrkaIrai 374 (734)
T KOG1061|consen 304 NLILQKRPE-ILKVEIKVFFCKY-NDP-IYVKLEKLEILIELAND------ANLAQVLAELKEYATEVDVDFVRKAVRAI 374 (734)
T ss_pred HHHHHhChH-HHHhHhHeeeeec-CCc-hhhHHHHHHHHHHHhhH------hHHHHHHHHHHHhhhhhCHHHHHHHHHHh
Confidence 444444443 111 111111111 122 22333334444444432 45666777777777777877777899999
Q ss_pred HHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcC-CCHhHHHHHH
Q 001749 403 GQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQETCM 481 (1018)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al 481 (1018)
|+++..... . ..++..++..+.-....|...++..+..+.+..+.. .+.++..+...+.+ .++..|...+
T Consensus 375 g~~aik~e~----~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~----~~~vv~~l~~~~~sl~epeak~ami 445 (734)
T KOG1061|consen 375 GRLAIKAEQ----S-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK----YESVVAILCENLDSLQEPEAKAALI 445 (734)
T ss_pred hhhhhhhhh----h-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc----hhhhhhhhcccccccCChHHHHHHH
Confidence 999876533 2 678888888887665566677788888888887654 25566666666655 3688888888
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccC--CCC
Q 001749 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG--LEF 559 (1018)
Q Consensus 482 ~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~--~~~ 559 (1018)
+.+|.-+..+++. ...|..+++.-.++... -.++.+....+.+++ ..+-.+++++.++.... .++
T Consensus 446 Wilg~y~~~i~~a--------~elL~~f~en~~dE~~~---Vql~LLta~ik~Fl~--~p~~tq~~l~~vL~~~~~d~~~ 512 (734)
T KOG1061|consen 446 WILGEYAERIENA--------LELLESFLENFKDETAE---VQLELLTAAIKLFLK--KPTETQELLQGVLPLATADTDN 512 (734)
T ss_pred HHHhhhhhccCcH--------HHHHHHHHhhcccchHH---HHHHHHHHHHHHHhc--CCccHHHHHHHHHhhhhccccC
Confidence 8888777665542 22233333332233322 223444444443332 22245666666665332 457
Q ss_pred hhHHHHHHHHHHHHH
Q 001749 560 SELREYTHGFFSNIA 574 (1018)
Q Consensus 560 ~~~~~~~~~~l~~l~ 574 (1018)
+++|..++..|.-+.
T Consensus 513 ~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 513 PDLRDRGLIYWRLLS 527 (734)
T ss_pred hhhhhhHHHHHHHhh
Confidence 899999888776655
No 87
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.48 E-value=0.0057 Score=69.66 Aligned_cols=164 Identities=11% Similarity=0.150 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCC
Q 001749 682 KAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDD 761 (1018)
Q Consensus 682 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 761 (1018)
+-++++..++|.+.+.+.. ..-.+...++.++..+++.+....+.|.++.+++.+++.|.- .|.
T Consensus 860 ykQRfF~~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~--------~D~------- 923 (1030)
T KOG1967|consen 860 YKQRFFCDIVPILVSKFET-APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSM--------PDV------- 923 (1030)
T ss_pred HHHHHHHhhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCC--------Ccc-------
Confidence 4567888999999998873 333456678899999999887777777888888777665432 111
Q ss_pred chhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCC--CccchhhhhHhHHHHHhhcCcc-hHhhHHhhHH
Q 001749 762 TAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSR--PLQDRTMVVATLAEVARDMGSP-IAAYVDRVMP 838 (1018)
Q Consensus 762 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~~r~~a~~~l~~~~~~~~~~-~~~~~~~l~~ 838 (1018)
.+.-....++..+....+.-...+...++|.++..-.+.+ +..+|..|+.|+..+.+..+.. +.+|-+.++.
T Consensus 924 -----~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~ 998 (1030)
T KOG1967|consen 924 -----IVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLR 998 (1030)
T ss_pred -----chhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHH
Confidence 1222334566666666676677899999999998766654 3678999999999999977654 6789999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhc
Q 001749 839 LVLKELASPDAMNRRNAAFCVGELCKNG 866 (1018)
Q Consensus 839 ~l~~~l~~~~~~vr~~a~~~lg~l~~~~ 866 (1018)
++.+.|.|+..-||..|+.+=+.+..-+
T Consensus 999 al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 999 ALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred HhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 9999999999999999999888776654
No 88
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.47 E-value=1.2e-06 Score=79.13 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=90.6
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHh
Q 001749 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (1018)
Q Consensus 338 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 416 (1018)
+++.+.+.+.+.+|..|..++.+++.++...++.....+. .+++.+.+.+.|+++.||..|++++++++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3445555677888999999999999999886555544454 788999999999999999999999999998764433333
Q ss_pred h-hhHHHHHHHhccCCChHHHHHHHHHHHHHHh
Q 001749 417 Y-ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1018)
Q Consensus 417 ~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (1018)
. ..+++.+.+.+.+.+..++..+++++.++++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 3 4589999999999999999999999998863
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.001 Score=72.90 Aligned_cols=318 Identities=12% Similarity=0.135 Sum_probs=179.5
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhhhh-hhccccccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHhhcccCChhh
Q 001749 119 LLPFLFQFSQSEQEEHREVALILFSSLTET-IGQTFRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTNDGAE 196 (1018)
Q Consensus 119 ll~~l~~~~~s~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~d~-~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1018)
++..+..-+.+.++.....|+.+++.+-+. ..+. +.+++- +.|-++ ...-||..|+-|+-++.+..++-
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~re~~ea---~~~DI~----KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSREMAEA---FADDIP----KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHH---hhhhhH----HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 344455556678888889999999887532 1222 222333 333321 45679999999999998877652
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCC-----------hHH
Q 001749 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLE-----------PNT 265 (1018)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~-----------~~~ 265 (1018)
.....+...++.. +.+.+-.+..++...+..++...++.++..++.-+..+..++...+.+ +-.
T Consensus 183 -~~~~~W~~riv~L----L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL 257 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHL----LDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWL 257 (938)
T ss_pred -cChhhHHHHHHHH----hCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHH
Confidence 2223455555554 555555555666677777777777766666655555444443322222 122
Q ss_pred HHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCC---CCCcHHHH-HHHHHHHHHHHcc-hhchHHHHH
Q 001749 266 RHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGED---DDLAPDRA-AAEVIDTMALNLA-KHVFPPVFE 340 (1018)
Q Consensus 266 r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d---~~~~~~~~-a~~~l~~l~~~~~-~~~~~~~~~ 340 (1018)
....+..+..+ |. ....+.-..+.+.+-.+|....+-... .......+ -.+++.-....-+ .+.+.....
T Consensus 258 ~vKl~rlLq~~----p~-~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~ 332 (938)
T KOG1077|consen 258 QVKLLRLLQIY----PT-PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVN 332 (938)
T ss_pred HHHHHHHHHhC----CC-CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 22222222222 10 000001112222222222221110000 00011111 1122222222222 556667777
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHhhc--ChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhcCHHHHHhh
Q 001749 341 FASVSCQNASPKYREAAVTAIGIISEG--CAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (1018)
Q Consensus 341 ~l~~~l~~~~~~~r~aal~~l~~l~~~--~~~~~~~~l~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 417 (1018)
.+.+++.+.....|+-|+..+..++.. ..+.++.| .+.++..|+ +++..||+.|+..|-.+|.. +..
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDLLY~mcD~------~Na 402 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDLLYAMCDV------SNA 402 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHHHHHHhch------hhH
Confidence 778889999999999999877777654 22444444 556677777 88999999999999999875 345
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHH
Q 001749 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL 465 (1018)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l 465 (1018)
+.++..++..|...+..+|+....=++-+++....+..=|.+.+++.+
T Consensus 403 k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 403 KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 577777888887778888887776677777777665555555544433
No 90
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.44 E-value=4.7e-07 Score=67.59 Aligned_cols=55 Identities=38% Similarity=0.662 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001749 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQF 405 (1018)
Q Consensus 351 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 405 (1018)
|.+|.+|+++||.+++.+++.+.++++.+++.+...|+|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999975
No 91
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.43 E-value=0.0016 Score=75.12 Aligned_cols=493 Identities=17% Similarity=0.198 Sum_probs=246.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHH
Q 001749 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSL 83 (1018)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~L 83 (1018)
.+..-++.++. |...+-+++..+.++.++|+.+..|.+ + ......|.|.++..|.+ +-+.-..|...+
T Consensus 124 ~~d~yiE~lYe-~~~ek~~~~~~il~La~~~~NL~~l~~---n-------e~l~~aL~RvLred~~k-s~~l~tnI~~iF 191 (708)
T PF05804_consen 124 DLDEYIELLYE-DIPEKIRGTSLILQLARNPENLEELVQ---N-------ETLMSALARVLREDWKK-SVELATNIIYIF 191 (708)
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHHHHHhCCcchHHHHHH---h-------HHHHHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 34555666664 345566777777888888876554433 1 22333455666666665 333333333222
Q ss_pred HHHHhhc---CCHHHHHHHHHHHHHHHcccCCC-CCccc---------------------hHHHHHHhhcCCChHHHHHH
Q 001749 84 IESITLE---HSAPVRRASANVVSIIAKYAVPA-GEWPD---------------------LLPFLFQFSQSEQEEHREVA 138 (1018)
Q Consensus 84 l~~l~~e---~~~~vr~~~~~~l~~i~~~~~~~-~~w~~---------------------ll~~l~~~~~s~~~~~r~~a 138 (1018)
+ ++.+- ..-..+.+++.+.-.+..++..+ ..|.+ ....+..+++.++ .....+
T Consensus 192 ~-~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQe-qLlrv~ 269 (708)
T PF05804_consen 192 F-CFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQE-QLLRVA 269 (708)
T ss_pred H-HHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 2 11110 11122333333332333222110 13422 1222333333332 333466
Q ss_pred HHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC
Q 001749 139 LILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG 218 (1018)
Q Consensus 139 l~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~ 218 (1018)
+++|..++++..-...-.-..+++.+..+|.. .+.++...++.++.++.-+..... .-.-.+.+|.+... +..+
T Consensus 270 ~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr-~n~ellil~v~fLkkLSi~~ENK~-~m~~~giV~kL~kL----l~s~ 343 (708)
T PF05804_consen 270 FYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR-ENEELLILAVTFLKKLSIFKENKD-EMAESGIVEKLLKL----LPSE 343 (708)
T ss_pred HHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHH-HHHHcCCHHHHHHH----hcCC
Confidence 78888888776543333345678888899987 788999999999988876654322 22234567766664 5667
Q ss_pred CHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh--HHHhhhcCChHHHHHH
Q 001749 219 EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK--YNSLKKHKLVIPILQV 296 (1018)
Q Consensus 219 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~--~~~~~~~~~~~~i~~~ 296 (1018)
+.+....+++.|.++.-...-.-.-.-..+++.+...+.+ +..+..++.++..+.... ...+... ..++.
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS~dd~~r~~f~~T----dcIp~ 415 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD----PNFREVALKILYNLSMDDEARSMFAYT----DCIPQ 415 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhccCHhhHHHHhhc----chHHH
Confidence 7888999999999987543211000011133334444443 245677888887776422 2222221 34555
Q ss_pred HhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-------hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh
Q 001749 297 MCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-------KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA 369 (1018)
Q Consensus 297 l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-------~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 369 (1018)
++.++.+..+. .........+-.++..-. ...++.++.. .++..+ ...+..+..++.+.+
T Consensus 416 L~~~Ll~~~~~------~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~r---a~~~~D----~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 416 LMQMLLENSEE------EVQLELIALLINLALNKRNAQLMCEGNGLQSLMKR---ALKTRD----PLLLKLIRNISQHDG 482 (708)
T ss_pred HHHHHHhCCCc------cccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHH---HHhccc----HHHHHHHHHHHhcCc
Confidence 66655443221 111111122222221110 1223333332 233322 122356777776643
Q ss_pred ---HHHHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhc--CHHHHHhhh--hHHHHHHHhccCC--ChHHHHHH
Q 001749 370 ---EWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYL--QPEIVSHYE--SVLPCILNALEDE--SDEVKEKS 439 (1018)
Q Consensus 370 ---~~~~~~l~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~--~~~~~~~~~--~~l~~l~~~l~~~--~~~v~~~a 439 (1018)
..+.+++..++ ..+.. .+.. ..+.|+|.++.-. ...+...+. .++|.+.+.|... .+.+.-.+
T Consensus 483 ~~k~~f~~~i~~L~----~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~ 555 (708)
T PF05804_consen 483 PLKELFVDFIGDLA----KIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEV 555 (708)
T ss_pred hHHHHHHHHHHHHH----HHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHH
Confidence 22233333333 33332 2444 4455555554432 123344442 6888888888644 24577778
Q ss_pred HHHHHHHHhhhccccccch--HHHHHHHHHhhcCC--CHhHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHhcc
Q 001749 440 YYALAAFCEDMGEEILPFL--DPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLT 513 (1018)
Q Consensus 440 ~~al~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~--~~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~ 513 (1018)
+..+++++..- ...+.+ ..+++.|+.+++.. +....-+.+-++..+...-.. ....+ .++...+...+...
T Consensus 556 Vi~~gtla~d~--~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-r~~ll~~~~~~~ylidL~~d~ 632 (708)
T PF05804_consen 556 VILLGTLASDP--ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-REVLLKETEIPAYLIDLMHDK 632 (708)
T ss_pred HHHHHHHHCCH--HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-HHHHHhccchHHHHHHHhcCC
Confidence 88888877432 222222 36788888888764 566777777777777655321 11111 23444555555444
Q ss_pred CchhhhhHHHHHHHHHHHH-------HhhhhhhcCCChHHHHHH
Q 001749 514 NDEDLRSRARATELLGLVA-------ESVGRARMEPILPPFVEA 550 (1018)
Q Consensus 514 ~~~~~~~r~~a~~~l~~l~-------~~~g~~~~~~~~~~l~~~ 550 (1018)
+ ..+|..|=.++..++ ..+..++|.-|-.++++.
T Consensus 633 N---~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~ 673 (708)
T PF05804_consen 633 N---AEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEM 673 (708)
T ss_pred C---HHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHH
Confidence 3 234444444444443 223333455555555544
No 92
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00011 Score=77.34 Aligned_cols=172 Identities=17% Similarity=0.194 Sum_probs=137.0
Q ss_pred hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCH
Q 001749 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (1018)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 411 (1018)
....+.++..+.....+..|+.|...+..++.+.....-.-.+.+..++..+.....||+..+|..|+.+|+..++.++.
T Consensus 212 ~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~ 291 (533)
T KOG2032|consen 212 DLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD 291 (533)
T ss_pred CccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH
Confidence 43444444444444566778889888877777665422111234677888888888999999999999999999999888
Q ss_pred HHHHhhhhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhh-ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001749 412 EIVSHYESVLPCILNALEDES-DEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1018)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~~-~~v~~~a~~al~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~ 489 (1018)
....|...++..++..|-|+. ..|+-.+..+|..+.+.. +..+.+|+-++.-++...+.+.+.++|..++..+|.++.
T Consensus 292 kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 292 KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 888999999999999988765 568888899998888877 667889999999999999999999999999999999999
Q ss_pred HhhccchhhH-HHHH
Q 001749 490 AAEQAFIPYA-ERVL 503 (1018)
Q Consensus 490 ~~~~~~~~~~-~~i~ 503 (1018)
..|.....++ +++.
T Consensus 372 l~g~~~e~~Fte~v~ 386 (533)
T KOG2032|consen 372 LAGGGWEEFFTEQVK 386 (533)
T ss_pred HcCCCchhhhHHHHH
Confidence 9987766655 3344
No 93
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0073 Score=67.14 Aligned_cols=437 Identities=15% Similarity=0.188 Sum_probs=211.0
Q ss_pred HHhhhcCCChhHHHHHH-HHHHHHhhcChHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhcC-HHHHHhhh
Q 001749 342 ASVSCQNASPKYREAAV-TAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQ-PEIVSHYE 418 (1018)
Q Consensus 342 l~~~l~~~~~~~r~aal-~~l~~l~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~~ 418 (1018)
+.+.+.+.+.+.|--|+ ..+..+.+| +.++.++-.+++. |-..+..++.--.+-+.-+-..-+ ....+.+=
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnG------e~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMI 98 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNG------EDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMI 98 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcC------CCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHH
Confidence 34446666666666555 556666666 2234444433332 334455554433333322211111 01111222
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhh
Q 001749 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPY 498 (1018)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~ 498 (1018)
-+-..+-+-|++|+.-+|......+..+ -.. ..+++++|.+..+|.+.+..||..|+-|+.++-.. .+++.|-
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckL---kE~---ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pD 171 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL---KEP---ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPD 171 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhc---CcH---HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCC
Confidence 3445566788899888887666655543 112 34778899999999999999999999999998776 3333344
Q ss_pred HHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcc
Q 001749 499 AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE 578 (1018)
Q Consensus 499 ~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 578 (1018)
.++++ ..++....++ .-+..|+-.+- .+.++....|+...+.. ..+-++.+.-.+...+-..|..-+
T Consensus 172 apeLi---~~fL~~e~Dp--sCkRNAFi~L~----~~D~ErAl~Yl~~~idq----i~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 172 APELI---ESFLLTEQDP--SCKRNAFLMLF----TTDPERALNYLLSNIDQ----IPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred hHHHH---HHHHHhccCc--hhHHHHHHHHH----hcCHHHHHHHHHhhHhh----ccCccHHHHHHHHHHHHHHHhcCH
Confidence 44333 3333332222 22222321111 11122222222222211 111123333444444444444333
Q ss_pred cCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeecccchhHHHHHHHHHHHHHH
Q 001749 579 DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALH 658 (1018)
Q Consensus 579 ~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~l~~~~~~ 658 (1018)
..-..|+.-++..|.+. + +.. .|+ .....+++.+. -..-..|..++.+++..
T Consensus 239 ~~~~~~i~~i~~lL~st-s--saV-------------~fE-----------aa~tlv~lS~~-p~alk~Aa~~~i~l~~k 290 (948)
T KOG1058|consen 239 AEKARYIRCIYNLLSST-S--SAV-------------IFE-----------AAGTLVTLSND-PTALKAAASTYIDLLVK 290 (948)
T ss_pred HHhhHHHHHHHHHHhcC-C--chh-------------hhh-----------hcceEEEccCC-HHHHHHHHHHHHHHHHh
Confidence 33344444444443322 1 000 000 00011111111 12233445555555443
Q ss_pred cccc-CcchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Q 001749 659 TKSS-YAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDAT 737 (1018)
Q Consensus 659 ~~~~-~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l 737 (1018)
.... ..-.+...+..++ ..-..++..+.-.+++.+. -+|-+++...+.-.-++...- .+.+++..+
T Consensus 291 esdnnvklIvldrl~~l~-----~~~~~il~~l~mDvLrvLs-s~dldvr~Ktldi~ldLvssr-------Nvediv~~L 357 (948)
T KOG1058|consen 291 ESDNNVKLIVLDRLSELK-----ALHEKILQGLIMDVLRVLS-SPDLDVRSKTLDIALDLVSSR-------NVEDIVQFL 357 (948)
T ss_pred ccCcchhhhhHHHHHHHh-----hhhHHHHHHHHHHHHHHcC-cccccHHHHHHHHHHhhhhhc-------cHHHHHHHH
Confidence 3221 1111111121111 1112233333333444443 567778877777666655442 344445444
Q ss_pred HHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccchhhhhHh
Q 001749 738 LLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVAT 817 (1018)
Q Consensus 738 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~ 817 (1018)
.+-+.+.+. . |.++.-++++.++.++.-+ .-.|..+...++|.+++.+.+.++.. -...+..
T Consensus 358 kke~~kT~~-------~--e~d~~~~yRqlLiktih~c--------av~Fp~~aatvV~~ll~fisD~N~~a-as~vl~F 419 (948)
T KOG1058|consen 358 KKEVMKTHN-------E--ESDDNGKYRQLLIKTIHAC--------AVKFPEVAATVVSLLLDFISDSNEAA-ASDVLMF 419 (948)
T ss_pred HHHHHhccc-------c--ccccchHHHHHHHHHHHHH--------hhcChHHHHHHHHHHHHHhccCCHHH-HHHHHHH
Confidence 333333221 1 1222234565555443322 22566778889999999999987632 4566777
Q ss_pred HHHHHhhcCcchHhhHHhhHHHHHHhcC-CCChHHHHHHHHHHHHHHhhcC
Q 001749 818 LAEVARDMGSPIAAYVDRVMPLVLKELA-SPDAMNRRNAAFCVGELCKNGG 867 (1018)
Q Consensus 818 l~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~ 867 (1018)
+.++++.++..-.. ++..++..+. =...++...|+|.+|..++...
T Consensus 420 vrE~iek~p~Lr~~----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 420 VREAIEKFPNLRAS----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHhCchHHHH----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 78888876543333 3334444333 2456778889999999998765
No 94
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00071 Score=73.62 Aligned_cols=294 Identities=17% Similarity=0.151 Sum_probs=171.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001749 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1018)
Q Consensus 158 ~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (1018)
..+...+.....+ .+..||..|++++-.+-+... +-..+.+...+.+.|.+++++.+|.+.+.-.....
T Consensus 197 ~~~~~~l~~~~~~-~D~~Vrt~A~eglL~L~eg~k----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 197 EHAARGLIYLEHD-QDFRVRTHAVEGLLALSEGFK----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHHHhcC-CCcchHHHHHHHHHhhccccc----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 3445546666677 899999999999888766332 11123333444578888999999988877776554
Q ss_pred cc---ch---hHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhh---------hh-
Q 001749 238 AP---LL---GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCP---------LL- 301 (1018)
Q Consensus 238 ~~---~~---~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~---------~l- 301 (1018)
|- .. ..+....+.-++..+. |.+-.+|..|...++.+-..+...+.. ..-+.++.-+-. .+
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~vSee~i~Q-TLdKKlms~lRRkr~ahkrpk~l~ 342 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQVSEEIIQQ-TLDKKLMSRLRRKRTAHKRPKALY 342 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHh--cCceeeeehHHHHhchHHHhHHHHHHH-HHHHHHhhhhhhhhhcccchHHHH
Confidence 21 11 1222223333333333 456678888888877765544332211 011111110000 00
Q ss_pred c--------cCCCCC---CCCCCcHHHHHHHHHHHHH-HHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh
Q 001749 302 A--------ESNEAG---EDDDLAPDRAAAEVIDTMA-LNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA 369 (1018)
Q Consensus 302 ~--------~~~~d~---~d~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 369 (1018)
. +|.+|. ++|+... ..+. ..+|. +...+.+.-..+|.||...++.++...+
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~--------siI~sGACGA---------~VhGlEDEf~EVR~AAV~Sl~~La~ssP 405 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEE--------SIIPSGACGA---------LVHGLEDEFYEVRRAAVASLCSLATSSP 405 (823)
T ss_pred hcCCcccCccccccCchhhcccccc--------ccccccccce---------eeeechHHHHHHHHHHHHHHHHHHcCCC
Confidence 0 111110 1111100 0000 11111 1123455567899999999999998665
Q ss_pred HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 001749 370 EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (1018)
Q Consensus 370 ~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (1018)
.. -...+.++...++|+...||..|.+++..++.+.. .-+..++.++..|.|.+..+|...-..|. .
T Consensus 406 ~F----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~----~ 472 (823)
T KOG2259|consen 406 GF----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLK----N 472 (823)
T ss_pred Cc----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHH----h
Confidence 43 34567788889999999999999999999998742 22466777888888998888876555544 3
Q ss_pred hccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccch
Q 001749 450 MGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI 496 (1018)
Q Consensus 450 ~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~ 496 (1018)
+.-.-..-++..+..++..+... ++-|...+.|++.++..-+..+.
T Consensus 473 ~~~~d~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~lv~ 518 (823)
T KOG2259|consen 473 ARVSDLECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRRLVL 518 (823)
T ss_pred cCCCcHHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChhhHH
Confidence 32222234556667777666643 34467788899888776655433
No 95
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.32 E-value=0.0084 Score=64.38 Aligned_cols=197 Identities=13% Similarity=0.028 Sum_probs=109.7
Q ss_pred HHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC------------
Q 001749 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR------------ 388 (1018)
Q Consensus 321 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~------------ 388 (1018)
.++..+...++....+.+-..+.+.+-++....|.+|+..-..+........+.+....=+.++..-+
T Consensus 121 ~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~P 200 (898)
T COG5240 121 MAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEP 200 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCC
Confidence 45555666666556666667777778888888888887555555444444444444333333333211
Q ss_pred CCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHH-----HHHHHHHHHHhhhccccccchHHHHH
Q 001749 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKE-----KSYYALAAFCEDMGEEILPFLDPLMG 463 (1018)
Q Consensus 389 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~-----~a~~al~~l~~~~~~~~~~~~~~l~~ 463 (1018)
..++.-++-|+..|.++-.. -.-.+-.+++.+..+. .+.. ....+...++..- ..++..+.+
T Consensus 201 n~~~isqYHalGlLyq~kr~--------dkma~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n----~q~~~q~rp 267 (898)
T COG5240 201 NGNPISQYHALGLLYQSKRT--------DKMAQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKEN----SQALLQLRP 267 (898)
T ss_pred CCChHHHHHHHHHHHHHhcc--------cHHHHHHHHHHhhccc-ccccchhheehHHHHHHHHHhC----hHHHHHHHH
Confidence 23566666665555554322 1122333444444332 1111 1122222222221 223455666
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhh
Q 001749 464 KLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (1018)
Q Consensus 464 ~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~ 535 (1018)
.|...+.+.-..|.-.+..++.+++... --..++++.+..|+.++..+ ...+|-.|++.+..++...
T Consensus 268 fL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~---rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 268 FLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKST---RVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHhhC
Confidence 6666677666678888888887776554 11235677888888887654 2346778889999888654
No 96
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.28 E-value=0.00013 Score=76.11 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHH-hcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHH
Q 001749 219 EEDVAVIAFEIFDEL-IESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (1018)
Q Consensus 219 ~~~~~~~a~~~l~~l-~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l 297 (1018)
..+.+..|+.-|..+ .+..-.....++..++..+++++.+. .++..|..|+..+..+++..+..+.. .... .+
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-~~~~~k~laLrvL~~ml~~Q~~~l~D--stE~---ai 373 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-EDEIIKKLALRVLREMLTNQPARLFD--STEI---AI 373 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHhchHhhhc--hHHH---HH
Confidence 445666776644444 45556677888999999889988763 46788999999999999988775433 2222 33
Q ss_pred hhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh-HHHHHhH
Q 001749 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKL 376 (1018)
Q Consensus 298 ~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l 376 (1018)
.+.|....+ .++...+.++..|+..++.+.|...+..+.+.+. ..+...--+++.++..+.+... +.+...+
T Consensus 374 ~K~Leaa~d---s~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Il----t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll 446 (516)
T KOG2956|consen 374 CKVLEAAKD---SQDEVMRVAEEDCLTTLASHLPLQCIVNISPLIL----TADEPRAVAVIKMLTKLFERLSAEELLNLL 446 (516)
T ss_pred HHHHHHHhC---CchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHh----cCcchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence 334433221 1234567777788888999888555555555433 3555555666778888888765 6777889
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcC-HHHHHhhhhHHHH
Q 001749 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ-PEIVSHYESVLPC 423 (1018)
Q Consensus 377 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~ 423 (1018)
+.+.|.++.+.+..+..||.+|.+||-.+....| ..+.+|+.++-..
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 9999999999999999999999999999999988 6777887765443
No 97
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.26 E-value=8.9e-05 Score=77.36 Aligned_cols=204 Identities=12% Similarity=0.144 Sum_probs=145.8
Q ss_pred HHhhcC-CCChhHHHHHHH-HHHHhHhhcCHHHHHhhhhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhhccccccchH
Q 001749 383 VLGALR-DPEQFVRGAASF-ALGQFAEYLQPEIVSHYESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLD 459 (1018)
Q Consensus 383 l~~~l~-d~~~~Vr~~a~~-~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 459 (1018)
.+..++ +....-|..|+. ..+-+++.--..+.+|+.+++..+++.|.| .+...+.-|...|..++++-+..+..+.+
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 333343 334555666666 444444443344567999999999999999 55667888999999999999999989999
Q ss_pred HHHHHHHHhhcCCCHhHHHHHHHHHHH-HHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhh
Q 001749 460 PLMGKLLAALENSPRNLQETCMSAIGS-VAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (1018)
Q Consensus 460 ~l~~~l~~~l~~~~~~vr~~al~al~~-l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~ 538 (1018)
..+..+++.-.+.+.++-..|-++... ++...|.. .+..+..++...+++ .-..++.++..+...+..+
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~---~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEP---RAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcch---HHHHHHHHHHHHHhhcCHH
Confidence 888888888888776665555554443 33333322 122233333333222 1224567778888888788
Q ss_pred hcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcc-cCcccchhhhhHHHHhhc
Q 001749 539 RMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAFSSC 596 (1018)
Q Consensus 539 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll~~~ 596 (1018)
.+.+.++.+++.+++..++.+..+|..+.-|+..|....| +.+.|||..+-..-++.+
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 8889999999999999998889999999999999999999 899999988765544443
No 98
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0017 Score=72.36 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=177.1
Q ss_pred ccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChh
Q 001749 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (1018)
Q Consensus 116 w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~ 195 (1018)
...+++++-.++.+.......-+...+..+....+..+.+ .+..+.-+++. +...+|.+|++.|..++...+...
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flss-p~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSS-PKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcC-cHHHHHHHHHHHHHHHHHhCCccc
Confidence 4568899999999887777777777777777766666666 34444555666 788899999999999987664311
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 001749 196 EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW 275 (1018)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~ 275 (1018)
.. .---+..++++.+..+..-|...|.+-.. ..-....+.++..++. +.+++.+.-+++.+.+
T Consensus 318 ~~---------cN~elE~lItd~NrsIat~AITtLLKTG~--e~sv~rLm~qI~~fv~------disDeFKivvvdai~s 380 (865)
T KOG1078|consen 318 TV---------CNLDLESLITDSNRSIATLAITTLLKTGT--ESSVDRLMKQISSFVS------DISDEFKIVVVDAIRS 380 (865)
T ss_pred cc---------cchhHHhhhcccccchhHHHHHHHHHhcc--hhHHHHHHHHHHHHHH------hccccceEEeHHHHHH
Confidence 00 00012233555555555555544433221 1222333444444433 2444555555566666
Q ss_pred HHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHH
Q 001749 276 LAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYRE 355 (1018)
Q Consensus 276 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~ 355 (1018)
++...|..- ..+++.+..+|.+. ...+..++...++-.+.+..++.-- .-+..+++++.|- ..+.
T Consensus 381 Lc~~fp~k~------~~~m~FL~~~Lr~e------Gg~e~K~aivd~Ii~iie~~pdsKe-~~L~~LCefIEDc--e~~~ 445 (865)
T KOG1078|consen 381 LCLKFPRKH------TVMMNFLSNMLREE------GGFEFKRAIVDAIIDIIEENPDSKE-RGLEHLCEFIEDC--EFTQ 445 (865)
T ss_pred HHhhccHHH------HHHHHHHHHHHHhc------cCchHHHHHHHHHHHHHHhCcchhh-HHHHHHHHHHHhc--cchH
Confidence 655444321 22344555555542 1234556666777777765552111 2233344444432 3456
Q ss_pred HHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHH
Q 001749 356 AAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEV 435 (1018)
Q Consensus 356 aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v 435 (1018)
-+...+..++..++....| ...+..+.+..-=.+..||.+|..++.+++.... ...+.+...+.+++.|.+..|
T Consensus 446 i~~rILhlLG~EgP~a~~P--skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc~~D~Ddev 519 (865)
T KOG1078|consen 446 IAVRILHLLGKEGPKAPNP--SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VLLPSILVLLKRCLNDSDDEV 519 (865)
T ss_pred HHHHHHHHHhccCCCCCCc--chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----CccccHHHHHHHHhcCchHHH
Confidence 6777777777665533222 1334455555555789999999999999983221 234567777778999999999
Q ss_pred HHHHHHHHHHHHhhhccccccc
Q 001749 436 KEKSYYALAAFCEDMGEEILPF 457 (1018)
Q Consensus 436 ~~~a~~al~~l~~~~~~~~~~~ 457 (1018)
|.+|..++..+-+.-.....+|
T Consensus 520 RdrAtf~l~~l~~~~~~l~~~~ 541 (865)
T KOG1078|consen 520 RDRATFYLKNLEEKDDVLNQNY 541 (865)
T ss_pred HHHHHHHHHHhhhhhhhhcccc
Confidence 9999999988875444333444
No 99
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.24 E-value=5e-06 Score=74.94 Aligned_cols=110 Identities=23% Similarity=0.326 Sum_probs=90.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh-hHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccc
Q 001749 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF 457 (1018)
Q Consensus 379 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 457 (1018)
+++.+...+.++++.+|..++++++.++...++....... .++|.+++.+.+++++++..++++|.+++...+.....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 5777888888999999999999999999875444444444 899999999999999999999999999998764433323
Q ss_pred h-HHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001749 458 L-DPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1018)
Q Consensus 458 ~-~~l~~~l~~~l~~~~~~vr~~al~al~~l~ 488 (1018)
. ..+++.+.+.+++.+..+++.++.+++.++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 347899999999999999999999998875
No 100
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.0038 Score=62.07 Aligned_cols=337 Identities=16% Similarity=0.161 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcc-ccc----cHHHHHHHHHHhcCC
Q 001749 96 RRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-FRP----HFADMQALLLKCLQD 170 (1018)
Q Consensus 96 r~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-~~~----~~~~l~~~l~~~l~d 170 (1018)
...+..|+..+.+...+-..-|+++|.+...+..++..++..++..++.+.+++... +.. .-..+++.+..++..
T Consensus 60 ttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 60 TTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred hhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 344677888887765555577999999999999999999999999999999887621 111 225678899999988
Q ss_pred CCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHH
Q 001749 171 ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVH 250 (1018)
Q Consensus 171 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~ 250 (1018)
.+.+|-.+|.+.+.++..+.. -+..++..=-.++-..+..+.+|
T Consensus 140 -eddeVAkAAiesikrialfpa--------------aleaiFeSellDdlhlrnlaakc--------------------- 183 (524)
T KOG4413|consen 140 -EDDEVAKAAIESIKRIALFPA--------------ALEAIFESELLDDLHLRNLAAKC--------------------- 183 (524)
T ss_pred -CcHHHHHHHHHHHHHHHhcHH--------------HHHHhcccccCChHHHhHHHhhh---------------------
Confidence 788899999998877765431 22222211001111112111111
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHH---hhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHH
Q 001749 251 FSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (1018)
Q Consensus 251 ~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~ 327 (1018)
++-+|...++++..+.+.+|.. +++. .++..+..-|...+| .-++....+....++
T Consensus 184 -----------ndiaRvRVleLIieifSiSpesaneckkS----GLldlLeaElkGteD------tLVianciElvteLa 242 (524)
T KOG4413|consen 184 -----------NDIARVRVLELIIEIFSISPESANECKKS----GLLDLLEAELKGTED------TLVIANCIELVTELA 242 (524)
T ss_pred -----------hhHHHHHHHHHHHHHHhcCHHHHhHhhhh----hHHHHHHHHhcCCcc------eeehhhHHHHHHHHH
Confidence 1123333344433333322221 1111 122222222332221 223333344444444
Q ss_pred HHc-chhchH--HHHHHHHhhhc--CCChhHHHHHHHHHHHHhhc------ChHHHHHhHHHHHHHHHhhcCCCChhHHH
Q 001749 328 LNL-AKHVFP--PVFEFASVSCQ--NASPKYREAAVTAIGIISEG------CAEWMKEKLESVLHIVLGALRDPEQFVRG 396 (1018)
Q Consensus 328 ~~~-~~~~~~--~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~------~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~ 396 (1018)
..- |.+.++ .+++.+...+. +.++..+.-+++.++.+... .++.+-..+...+.-.+..+...++....
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 322 233332 35555555543 45677777777777766543 22333333444555566666778888999
Q ss_pred HHHHHHHHhHhhcCH-HH-HHhhhhHHHHHHHhccCCCh-HHHHHHHHHHHHHHhhh---cccccc----------chHH
Q 001749 397 AASFALGQFAEYLQP-EI-VSHYESVLPCILNALEDESD-EVKEKSYYALAAFCEDM---GEEILP----------FLDP 460 (1018)
Q Consensus 397 ~a~~~l~~l~~~~~~-~~-~~~~~~~l~~l~~~l~~~~~-~v~~~a~~al~~l~~~~---~~~~~~----------~~~~ 460 (1018)
+|..++|.+.+.... ++ .+.-++-...++....|.+. .-+..+..+|.++.... ++.+.. +++.
T Consensus 323 aAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifda 402 (524)
T KOG4413|consen 323 AAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDA 402 (524)
T ss_pred HHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHH
Confidence 999999999876532 22 22333344444444444332 23455666666665433 111111 1111
Q ss_pred --------HHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001749 461 --------LMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1018)
Q Consensus 461 --------l~~~l~~~l~~~~~~vr~~al~al~~l~~ 489 (1018)
=+..+..+++.+.++++..++.++..++.
T Consensus 403 aaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 403 AAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 12234445666678888888888877753
No 101
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.018 Score=65.50 Aligned_cols=370 Identities=14% Similarity=0.118 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCC-----hHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcC
Q 001749 95 VRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQ-----EEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQ 169 (1018)
Q Consensus 95 vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~-----~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 169 (1018)
.|+.+++.+-......+ .+...-+...+-+.+.+.+ +...+..+..+..+.++.+....+.++.++......--
T Consensus 440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~ 518 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL 518 (982)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence 44455554444333222 1233445555666665544 67778889999999999887766666666655544322
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHH
Q 001749 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIV 249 (1018)
Q Consensus 170 d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li 249 (1018)
+..+++.-..+...++.+..|..+. .. .++..++.+.+.+. +.+....+...+.++.+..+.-+.++..+++
T Consensus 519 S~~n~ql~~Tss~~igs~s~~l~e~--P~----~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~ 590 (982)
T KOG2022|consen 519 SAPNPQLLSTSSDLIGSLSNWLGEH--PM----YLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFS 590 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhcC--Cc----ccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHH
Confidence 2257888888999999998888643 12 34444444444553 3445556666689999988888999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHh-HHHhhhcCChHHHHHHHhhhhccC-CCCCCCCCCcHHHH--HHHHHHH
Q 001749 250 HFSLEVSSSHNLEPNTRHQAIQIISWLAKYK-YNSLKKHKLVIPILQVMCPLLAES-NEAGEDDDLAPDRA--AAEVIDT 325 (1018)
Q Consensus 250 ~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~-~~~~~~~~~~~~i~~~l~~~l~~~-~~d~~d~~~~~~~~--a~~~l~~ 325 (1018)
..+-+++......+..|...+..++.+.... |....+ ++-.++..++.-+... ..+-++.+ ...+. -..++..
T Consensus 591 a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~k--yl~~lin~il~qle~~l~~~i~~~e-~~l~~~~~l~~iS~ 667 (982)
T KOG2022|consen 591 AVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPK--YLMKLINPILSQLEINLAPGIDDQE-NHLRIAFQLNTISA 667 (982)
T ss_pred HHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHH--HHHHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHHHH
Confidence 9888877665556677777666666554422 222222 4555555555444332 11111111 11111 1122333
Q ss_pred HHHHcc--hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc--CCCChhHHHHHHHH
Q 001749 326 MALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL--RDPEQFVRGAASFA 401 (1018)
Q Consensus 326 l~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l--~d~~~~Vr~~a~~~ 401 (1018)
|...+- .+.. ..+.+..|..-. -.+ .+...+.++++.+-+.+ .-.+..|..++|..
T Consensus 668 LftSL~~~~~~~-----------d~d~~~~~~~~~------qq~---~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i 727 (982)
T KOG2022|consen 668 LFTSLINKKDII-----------DTDQPEQREEPF------QQF---PILQVLQKAIPVFEKVLSMWLGLSDVVEASCII 727 (982)
T ss_pred HHhccCCCCccc-----------cccchhhhcccc------ccC---CHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 332221 0000 000111110000 000 11112233333333332 23455677777777
Q ss_pred HHHhHhhcCHHH-HHhhhhHHHHHHHhccCCChHHHHH-HHHHHHHHH--hhhccccccchHHHHHHHHHhhcC----CC
Q 001749 402 LGQFAEYLQPEI-VSHYESVLPCILNALEDESDEVKEK-SYYALAAFC--EDMGEEILPFLDPLMGKLLAALEN----SP 473 (1018)
Q Consensus 402 l~~l~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~v~~~-a~~al~~l~--~~~~~~~~~~~~~l~~~l~~~l~~----~~ 473 (1018)
.+.=.....+.+ .++++.+.+-+.+....+. .+... ...++.... +.+++.+..-+...++..+.++++ ++
T Consensus 728 ~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~-a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~ 806 (982)
T KOG2022|consen 728 MVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCL-AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQ 806 (982)
T ss_pred HHhccccccccchhhhHHHHHHHHHHhccchH-HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCC
Confidence 766555444445 5677788887777443331 11111 111111111 111222222233344444444544 34
Q ss_pred HhHHHHHHHHHHHHHHHhhccchh
Q 001749 474 RNLQETCMSAIGSVAAAAEQAFIP 497 (1018)
Q Consensus 474 ~~vr~~al~al~~l~~~~~~~~~~ 497 (1018)
+.+-...+..+..+.+..++-+.+
T Consensus 807 ~Di~~~~~~~v~~ilkk~P~~~~~ 830 (982)
T KOG2022|consen 807 PDIYLQLIGFVRQILKKIPKFLEP 830 (982)
T ss_pred chHHHHHHHHHHHHHHhCcCcccc
Confidence 666667777777777777766555
No 102
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.0015 Score=73.23 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=131.6
Q ss_pred HHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhhcc
Q 001749 376 LESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDES-DEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 376 l~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~-~~v~~~a~~al~~l~~~~~~ 452 (1018)
++.++|.+...|+++ ++.+...||+|+..+++.+++...-.. ...+|.++..|..-. -.|.+.++.||..+.+.-+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 678999999999876 789999999999999999987654322 357888887776543 46888999999999887765
Q ss_pred ccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 001749 453 EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (1018)
Q Consensus 453 ~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 532 (1018)
.+.. ...++. .+..++--...++..|+...+.++..+..+-..|+-+.+|+|.++++..+..-+. .+.-|+..++
T Consensus 289 AiL~-AG~l~a-~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ie---s~~ic~~ri~ 363 (1051)
T KOG0168|consen 289 AILQ-AGALSA-VLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIE---SVCICLTRIA 363 (1051)
T ss_pred HHHh-cccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHH---HHHHHHHHHH
Confidence 5422 111222 2222222345788899999999998888766667778899999999865433222 2333445554
Q ss_pred Hhh--hhhhcCCCh-HHHHHHHHhccCCC----ChhHHHHHHHHHHHHHHHcccCcccch-hhhhHHHHhhc
Q 001749 533 ESV--GRARMEPIL-PPFVEAAISGFGLE----FSELREYTHGFFSNIAGVLEDGFAQYL-PLVVPLAFSSC 596 (1018)
Q Consensus 533 ~~~--g~~~~~~~~-~~l~~~l~~~l~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~ll~~~ 596 (1018)
... +++.+...+ +.+++.+.+.+... +..+...++..+..|+..++..|...+ ..|...+...+
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il 435 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRIL 435 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHH
Confidence 332 233332221 23444333333322 223344455556666655444444332 23444444333
No 103
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.011 Score=65.83 Aligned_cols=413 Identities=11% Similarity=0.132 Sum_probs=208.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHH-HhcCCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhhhccCCH--------H
Q 001749 7 LLLIQFLMPDNDARRQAEDQIKR-LAKDPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSP--------Q 74 (1018)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~-~~~~p~~~~~l~~~l~~---~~~~~~R~~a~~~l~~~i~~~w~~l~~--------~ 74 (1018)
++-+.+-+.|.+.+-.|.+.+-. +.+-..+-..+++++.- +.+-++++ .+--.|+-++. +
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKK--------Lly~ywE~vPKt~~dgkl~~ 95 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKK--------LLYYYWELVPKTDSDGKLLH 95 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHH--------HHHHHHHHccccCCCcccHH
Confidence 34455566777777777776654 34433454555565542 33444444 33344553321 1
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcccc
Q 001749 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (1018)
Q Consensus 75 ~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~ 154 (1018)
+.-.+.+..=+.|. .++..+|-..-+-++.+-. | .-...++|.+.+++.+...-+|..|..++..|...+. .+.
T Consensus 96 EMILvcna~RkDLQ-HPNEyiRG~TLRFLckLkE---~-ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~ 169 (948)
T KOG1058|consen 96 EMILVCNAYRKDLQ-HPNEYIRGSTLRFLCKLKE---P-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLI 169 (948)
T ss_pred HHHHHHHHHhhhcc-CchHhhcchhhhhhhhcCc---H-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhc
Confidence 22233344444455 3888899665555554433 2 2456789999999999999999999999999987643 344
Q ss_pred ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhc-----ccCCh-hhHHHHHhhHHH-HHHHHHHHhhcCCHHHHHHHH
Q 001749 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLE-----FTNDG-AEVVKFREFIPS-ILNVSRQCLASGEEDVAVIAF 227 (1018)
Q Consensus 155 ~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~-----~~~~~-~~~~~~~~~~~~-ll~~l~~~l~~~~~~~~~~a~ 227 (1018)
+..++++.-++. .+ .++..+..|+-.|...-+ |.... +.+..|.+.+.. +++.+.+- ...++..+..-+
T Consensus 170 pDapeLi~~fL~--~e-~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv-~~~~p~~~~~~i 245 (948)
T KOG1058|consen 170 PDAPELIESFLL--TE-QDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKV-CLANPAEKARYI 245 (948)
T ss_pred CChHHHHHHHHH--hc-cCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHH-HhcCHHHhhHHH
Confidence 556666554432 23 556666666544322211 11000 000111111111 11211111 112333333333
Q ss_pred HHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCC
Q 001749 228 EIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEA 307 (1018)
Q Consensus 228 ~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d 307 (1018)
+|+..+.... ++.++..|...+.++.. .|. .+......++.++....
T Consensus 246 ~~i~~lL~st------------------------ssaV~fEaa~tlv~lS~-~p~------alk~Aa~~~i~l~~kes-- 292 (948)
T KOG1058|consen 246 RCIYNLLSST------------------------SSAVIFEAAGTLVTLSN-DPT------ALKAAASTYIDLLVKES-- 292 (948)
T ss_pred HHHHHHHhcC------------------------CchhhhhhcceEEEccC-CHH------HHHHHHHHHHHHHHhcc--
Confidence 4433333221 23333333222221110 000 11111122222221111
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHcc--hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHh
Q 001749 308 GEDDDLAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (1018)
Q Consensus 308 ~~d~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~ 385 (1018)
|.++. .-.+++++.... +.++.-+.--+...+.+++..+|.-++...-.++.. ..+.+++.++-+
T Consensus 293 ----dnnvk---lIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss------rNvediv~~Lkk 359 (948)
T KOG1058|consen 293 ----DNNVK---LIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS------RNVEDIVQFLKK 359 (948)
T ss_pred ----Ccchh---hhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh------ccHHHHHHHHHH
Confidence 11121 223344433222 344444444445668899999998888444444332 123333333333
Q ss_pred hc-------CCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccch
Q 001749 386 AL-------RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (1018)
Q Consensus 386 ~l-------~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 458 (1018)
-+ .|.+..-|+.-..++..++..++ ++...+++.+++.+.|.++.........+...++.+++- =
T Consensus 360 e~~kT~~~e~d~~~~yRqlLiktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L----r 431 (948)
T KOG1058|consen 360 EVMKTHNEESDDNGKYRQLLIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL----R 431 (948)
T ss_pred HHHhccccccccchHHHHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH----H
Confidence 22 34566678888888888887764 466789999999999998766666666666666665542 1
Q ss_pred HHHHHHHHHhhcC-CCHhHHHHHHHHHHHHHHHh
Q 001749 459 DPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAA 491 (1018)
Q Consensus 459 ~~l~~~l~~~l~~-~~~~vr~~al~al~~l~~~~ 491 (1018)
..++..++..+.. .+.++-..+++-+|.-+...
T Consensus 432 ~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 432 ASIIEKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 2345555544432 24456667777777655443
No 104
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.0044 Score=65.01 Aligned_cols=457 Identities=15% Similarity=0.146 Sum_probs=244.7
Q ss_pred CCChHHHHHHHHHHHHhhhhhhc-cccccHHHHHH---------HHHHhcCCCCCHHHHHHHHHHHHHhhcccC------
Q 001749 129 SEQEEHREVALILFSSLTETIGQ-TFRPHFADMQA---------LLLKCLQDETSNRVRIAALKAIGSFLEFTN------ 192 (1018)
Q Consensus 129 s~~~~~r~~al~~l~~l~~~~~~-~~~~~~~~l~~---------~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~------ 192 (1018)
+...++|.+|+.+|....+..+. .+..|+..++| ++.-+|.| ++++.|..|+..++.+..-..
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd-~~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKD-PSPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCC-CChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44568899999999998877653 33334433332 23345778 999999999999888764321
Q ss_pred ----C----hhhHHHHHhhHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHhcCCcc-chh-HhHHHHHHHHHHHhcCCCC
Q 001749 193 ----D----GAEVVKFREFIPSILNVSRQCL-ASGEEDVAVIAFEIFDELIESPAP-LLG-DSVKSIVHFSLEVSSSHNL 261 (1018)
Q Consensus 193 ----~----~~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~-~~~-~~~~~li~~l~~~~~~~~~ 261 (1018)
+ ++.+ .+...+-.+-..+...+ ....+.+...+++||..++...|. .++ ..+-.+...+-..+.++
T Consensus 86 ~~~~~~~ftpf~v-~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~-- 162 (728)
T KOG4535|consen 86 EDTSDHAFTPFSV-MIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHK-- 162 (728)
T ss_pred hccCCcCCCchHH-HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcC--
Confidence 1 1111 11111111111111122 234567788889999999876543 111 12222332222333433
Q ss_pred ChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHH-------------------hhhhccCC------CCC--------
Q 001749 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM-------------------CPLLAESN------EAG-------- 308 (1018)
Q Consensus 262 ~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l-------------------~~~l~~~~------~d~-------- 308 (1018)
|+.+|..++-.+..++..+.. .+.+-..+ .+-|.+.+ +.+
T Consensus 163 d~~v~vs~l~~~~~~v~t~~~-------~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 235 (728)
T KOG4535|consen 163 DVNVRVSSLTLLGAIVSTHAP-------LPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPC 235 (728)
T ss_pred CCChhhHHHHHHHHHHhcCCC-------CHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCc
Confidence 667888888888777754321 11110000 00011110 000
Q ss_pred -------------CCCCC----------------cHHHHHHHHHHHHHHHcc--hhchHHHHHHHHhhhcCCChhHHHHH
Q 001749 309 -------------EDDDL----------------APDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAA 357 (1018)
Q Consensus 309 -------------~d~~~----------------~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~aa 357 (1018)
.++.| ..|-.+.+.+..++..+| .-++-.+...+...+....+.+..-+
T Consensus 236 ~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~ 315 (728)
T KOG4535|consen 236 WLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHG 315 (728)
T ss_pred ceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHH
Confidence 01222 234456677777888877 44555666666777777777777666
Q ss_pred HHHHHHHhhcCh-----HHHHHh-HHH-HHHHHH-----hhc-CCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHH
Q 001749 358 VTAIGIISEGCA-----EWMKEK-LES-VLHIVL-----GAL-RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCI 424 (1018)
Q Consensus 358 l~~l~~l~~~~~-----~~~~~~-l~~-l~~~l~-----~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 424 (1018)
..++..+..+.. +..+.. ... +.-+.. ... +..++....++|.++.++...-...+..--....+.+
T Consensus 316 a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~F 395 (728)
T KOG4535|consen 316 AKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITF 395 (728)
T ss_pred HHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHH
Confidence 666666555432 111110 111 111111 111 1235667778888888876432111111223456666
Q ss_pred HHhccCCChH-HHHHHHHHHHHHHhhhccc-cccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchh---hH
Q 001749 425 LNALEDESDE-VKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP---YA 499 (1018)
Q Consensus 425 ~~~l~~~~~~-v~~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~---~~ 499 (1018)
+.+..|...+ ++..|..+++.++-+-+-. ..-+.......+...+.+...++|+.+..++|.+..+.-.+... +-
T Consensus 396 l~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~ 475 (728)
T KOG4535|consen 396 LLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQ 475 (728)
T ss_pred HhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHH
Confidence 6677766555 6667777777655443222 22455566666677777778899999999999998887654432 33
Q ss_pred HHHHHHHH-HHHh---ccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccC-----CCChhHHHHHHHHH
Q 001749 500 ERVLELLK-IFMV---LTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG-----LEFSELREYTHGFF 570 (1018)
Q Consensus 500 ~~i~~~l~-~~l~---~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~-----~~~~~~~~~~~~~l 570 (1018)
..+...+. ..+. ..+....+++..+++.++.+...+.+ ...+-..++++.-...+- .....++=-++-++
T Consensus 476 eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~-i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~ 554 (728)
T KOG4535|consen 476 ERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP-IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAM 554 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH-hhhccHHHHHHHHHHhcccceecccccccchHHHHHH
Confidence 44443322 2222 22333456788899998888766542 233334445544332221 12345565566677
Q ss_pred HHHHHHcc--cCcccchhhhhHHHHhhcc
Q 001749 571 SNIAGVLE--DGFAQYLPLVVPLAFSSCN 597 (1018)
Q Consensus 571 ~~l~~~~~--~~~~~~l~~i~~~ll~~~~ 597 (1018)
+++.+.-- -.-.+.-+.+.+.|...+.
T Consensus 555 gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~ 583 (728)
T KOG4535|consen 555 GNLFKNPALPLQTAPWASQAFNALTSLVT 583 (728)
T ss_pred HHhhcCccccccCCCchHHHHHHHHHHHH
Confidence 77765322 2224566777777776553
No 105
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.19 E-value=3.2e-06 Score=63.08 Aligned_cols=55 Identities=31% Similarity=0.480 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001749 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1018)
Q Consensus 392 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (1018)
|.||..|+++||.++...+....++.+.++|.|...|.|+++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999998888888899999999999999999999999999999864
No 106
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.18 E-value=5.1e-05 Score=87.97 Aligned_cols=205 Identities=18% Similarity=0.180 Sum_probs=160.3
Q ss_pred hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcC
Q 001749 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
.++++.+-+.+...+.|++|+.|..|+..+..+.+... .....+...+...+-..+.|.|..|...|+.+|..++..++
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 45666677777788899999999999998888777654 22222333344444555679999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001749 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1018)
Q Consensus 411 ~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~ 490 (1018)
..+.+|...++|.++..+.+....++..+..++..++... .+..+.+.+...+.+.++.++..+...++.....
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 9889999999999999999998899998888888887733 3567788888889999999999999999999888
Q ss_pred hhcc--chhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChH
Q 001749 491 AEQA--FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILP 545 (1018)
Q Consensus 491 ~~~~--~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~ 545 (1018)
.+.. +..-...+.|.+..... +.+..+|..+.++++.+.+.+|.+.+..++.
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~---D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHIN---DTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhcc---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8742 33344667777765543 3445688899999999999998755544443
No 107
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00032 Score=78.42 Aligned_cols=444 Identities=12% Similarity=0.126 Sum_probs=226.3
Q ss_pred hHHHHHHhhcCC-ChHHHHHHHHHHHHhhhhhh----cccc-ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccC
Q 001749 119 LLPFLFQFSQSE-QEEHREVALILFSSLTETIG----QTFR-PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (1018)
Q Consensus 119 ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~----~~~~-~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~ 192 (1018)
=+..|++.++.. ++. ..+..+.++|+... +.+. --++.++|.+...|+++.+.++...|++|+..+++.++
T Consensus 168 k~kkLL~gL~~~~Des---~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDES---QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChH---HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 355666666655 443 34555555555431 2222 23578999999999987789999999999999999887
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccch-h-HhHHHHHHHHHHHhcCCCCChHHHHHHH
Q 001749 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL-G-DSVKSIVHFSLEVSSSHNLEPNTRHQAI 270 (1018)
Q Consensus 193 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~-~~~~~li~~l~~~~~~~~~~~~~r~~a~ 270 (1018)
..-....-.+.+|.+++-+..+ +.-+++..+++.|..+...++... + ..+..++.++ +. ++..+++.|+
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DF-----FSi~aQR~Al 315 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DF-----FSIHAQRVAL 315 (1051)
T ss_pred chhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HH-----HHHHHHHHHH
Confidence 6433333345788887765432 567889999999998887766533 1 2233333322 11 2345678888
Q ss_pred HHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc--hhchH-----HHHHHHH
Q 001749 271 QIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVFP-----PVFEFAS 343 (1018)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~--~~~~~-----~~~~~l~ 343 (1018)
....++++.-+.. ...++...+|++.++|...++ .+-.....|+.+++..+. .+.+. -++..+.
T Consensus 316 aiaaN~Cksi~sd--~f~~v~ealPlL~~lLs~~D~-------k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~ 386 (1051)
T KOG0168|consen 316 AIAANCCKSIRSD--EFHFVMEALPLLTPLLSYQDK-------KPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQ 386 (1051)
T ss_pred HHHHHHHhcCCCc--cchHHHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHH
Confidence 8877777643221 123677788999999987653 556666777888776554 22222 2333333
Q ss_pred hhhcCC----ChhHHHHHHHHHHHHhhcChHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh
Q 001749 344 VSCQNA----SPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1018)
Q Consensus 344 ~~l~~~----~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1018)
+++.-. +.....+.+..+..++.+++..+..-+. .|...+...|..... .+...+.......+.+.....
T Consensus 387 qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~----s~nas~~~~l~r~Pnel~e~~- 461 (1051)
T KOG0168|consen 387 QLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK----SANASLHELLSRSPNELYELT- 461 (1051)
T ss_pred HHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc----CcccccccccccCcHHHHHHH-
Confidence 333211 2345667788899999998755443322 233333333321110 000011111111111111100
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhh-------hccc---cccchHHHHHHHHHhhcCCC---HhH-HHHHHHHH
Q 001749 419 SVLPCILNALEDESDEVKEKSYYALAAFCED-------MGEE---ILPFLDPLMGKLLAALENSP---RNL-QETCMSAI 484 (1018)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~-------~~~~---~~~~~~~l~~~l~~~l~~~~---~~v-r~~al~al 484 (1018)
.++-.|+.++-.. .+-.--|..+..++.. .++. +.+| ..+..+++.-.+... ..+ +.-...+=
T Consensus 462 sl~~eLlp~~p~e--~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~-~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r 538 (1051)
T KOG0168|consen 462 SLIIELLPCLPVE--GIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTY-TNIDSRIIEQINEDTGTSRKQQDKLNGSAR 538 (1051)
T ss_pred HHHheeecCCccc--ceeehhhhhhcccccccccccccCcccccccccc-chhhhhhhhhhccCcccchhhhhhcCCchh
Confidence 0111111111110 0000001111111111 1111 1223 233334443333221 111 11111222
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChH--HHHHHHHhccCCCChhH
Q 001749 485 GSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILP--PFVEAAISGFGLEFSEL 562 (1018)
Q Consensus 485 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~--~l~~~l~~~l~~~~~~~ 562 (1018)
..+...-++.+..|...++|+|.++....-++ .+|.+++.++..+......+.+...+. .+-..+...+...+..+
T Consensus 539 ~~~l~nqpel~q~F~~~llpVLveVYsSsA~~--~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~v 616 (1051)
T KOG0168|consen 539 EGLLKNQPELLQSFGKDLLPVLVEVYSSSANP--DVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTV 616 (1051)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHhccCCc--hhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCee
Confidence 22223334556778888999999988765444 456666666665543322221111110 00111112233445566
Q ss_pred HHHHHHHHHHHHHHcccCcccchh--hhhHHHH
Q 001749 563 REYTHGFFSNIAGVLEDGFAQYLP--LVVPLAF 593 (1018)
Q Consensus 563 ~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~ll 593 (1018)
.-.+++...-+.+.+++-|.+++- .|+-.+-
T Consensus 617 lVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~ 649 (1051)
T KOG0168|consen 617 LVGALQVAEILMEKLPDTFSPSFRREGVFHAVK 649 (1051)
T ss_pred EeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHH
Confidence 666778888888888888888764 3444443
No 108
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0022 Score=70.34 Aligned_cols=288 Identities=14% Similarity=0.192 Sum_probs=162.1
Q ss_pred HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-ccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 001749 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP-APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (1018)
Q Consensus 201 ~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~ 279 (1018)
.+++..+++.+..-+.+.++--...|+.++..+.+.. ...|.+-++ +++-+.+..+-+|..|.-++..+-+.
T Consensus 106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~-------KlLvS~~~~~~vkqkaALclL~L~r~ 178 (938)
T KOG1077|consen 106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP-------KLLVSGSSMDYVKQKAALCLLRLFRK 178 (938)
T ss_pred hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH-------HHHhCCcchHHHHHHHHHHHHHHHhc
Confidence 3456666666666666777777888888888877642 112222222 22233445667787766666667666
Q ss_pred hHHHhhhcCChHHHHHHHhh--------------hhccCCCCCCCCCCcH-HHHHHHHHHHHHHHcchh-------chH-
Q 001749 280 KYNSLKKHKLVIPILQVMCP--------------LLAESNEAGEDDDLAP-DRAAAEVIDTMALNLAKH-------VFP- 336 (1018)
Q Consensus 280 ~~~~~~~~~~~~~i~~~l~~--------------~l~~~~~d~~d~~~~~-~~~a~~~l~~l~~~~~~~-------~~~- 336 (1018)
.|..+....+..++++.+-. .+.... ++++.. ..-+..-|.+++...+.. .+|
T Consensus 179 spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~----p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~ 254 (938)
T KOG1077|consen 179 SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN----PESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPA 254 (938)
T ss_pred CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC----CHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCC
Confidence 77665554566666554310 000000 011100 011122222222222210 011
Q ss_pred -----HHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChH------HHH----------------------HhHHHHHHHH
Q 001749 337 -----PVFEFASVSCQNASPKYREAAVTAIGIISEGCAE------WMK----------------------EKLESVLHIV 383 (1018)
Q Consensus 337 -----~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------~~~----------------------~~l~~l~~~l 383 (1018)
.++..+..+-.-.|...|.....++..+..+..+ ... +-+.+.+..+
T Consensus 255 PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~L 334 (938)
T KOG1077|consen 255 PWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQL 334 (938)
T ss_pred hHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1222222222224455555555666555544321 000 1122334445
Q ss_pred HhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhhccccccchHHHH
Q 001749 384 LGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLM 462 (1018)
Q Consensus 384 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~ 462 (1018)
...+.+....+|+-|+..+..++..-. . .+.++.-...++..|+ +.+..+|..|...|-.||+... ...|+
T Consensus 335 g~fls~rE~NiRYLaLEsm~~L~ss~~-s-~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N------ak~IV 406 (938)
T KOG1077|consen 335 GQFLSHRETNIRYLALESMCKLASSEF-S-IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN------AKQIV 406 (938)
T ss_pred HHHhhcccccchhhhHHHHHHHHhccc-h-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh------HHHHH
Confidence 555666677777777777777765421 1 1122222555666677 6677899999999999998653 45688
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Q 001749 463 GKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLK 507 (1018)
Q Consensus 463 ~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~ 507 (1018)
..+++.+.+-+..+|+...--++.+++....+..=|.+.++.++.
T Consensus 407 ~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 407 AELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIR 451 (938)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 888899998999999999999999998887777777777766554
No 109
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.054 Score=63.95 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=108.3
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcC-h
Q 001749 291 IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-A 369 (1018)
Q Consensus 291 ~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~ 369 (1018)
..++..++.-....++.+ -|....+.-...|..++...|.-.++.+ ..+.+.+.+.+..-|.+.+.+++.+.... .
T Consensus 269 ~sl~~~Iir~I~~~~~~~--~d~~g~k~v~~fL~elS~~~P~l~~~~l-~~lv~lld~es~~lRnavlei~~n~V~~~l~ 345 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNE--KDCAGPKIVGNFLVELSERVPKLMLRQL-TLLVDLLDSESYTLRNAVLEICANLVASELR 345 (1251)
T ss_pred HHHHHHHHHHhcccchhc--ccccchhhHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCchHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444433211 2334455567778888887775444333 33334688889999999998888876532 1
Q ss_pred ----HHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHH
Q 001749 370 ----EWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALA 444 (1018)
Q Consensus 370 ----~~~~~~l~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~ 444 (1018)
+.....+. .++..+...+.|-++.||..++..+.+++..-.. .......++...+..+.|.+.-||..|...+.
T Consensus 346 d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~ 424 (1251)
T KOG0414|consen 346 DEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLS 424 (1251)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC-CccHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 22222333 4888899999999999999999999999875321 12356788999999999999999999999999
Q ss_pred HHHhhh
Q 001749 445 AFCEDM 450 (1018)
Q Consensus 445 ~l~~~~ 450 (1018)
.+....
T Consensus 425 ~~L~~~ 430 (1251)
T KOG0414|consen 425 SLLDRH 430 (1251)
T ss_pred HHHhcC
Confidence 887764
No 110
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.07 E-value=0.1 Score=68.17 Aligned_cols=596 Identities=16% Similarity=0.179 Sum_probs=283.1
Q ss_pred CcHHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC
Q 001749 313 LAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (1018)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d 389 (1018)
......+..++..++...+ .+....-...+.+++.+..-..|.+|...+..++...+..+-+++..++..++..+.|
T Consensus 107 ~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~ 186 (2341)
T KOG0891|consen 107 VEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRD 186 (2341)
T ss_pred hHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccC
Confidence 3455566666666665444 3344444555556665556667889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhHhhcCHHHH----HhhhhHHHHHHHhccCCChH------------------------HHHHHHH
Q 001749 390 PEQFVRGAASFALGQFAEYLQPEIV----SHYESVLPCILNALEDESDE------------------------VKEKSYY 441 (1018)
Q Consensus 390 ~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~~l~~l~~~l~~~~~~------------------------v~~~a~~ 441 (1018)
+++.+|..|+.++.......+.... ..+...+...-..+..+... .+...+.
T Consensus 187 ~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (2341)
T KOG0891|consen 187 PKPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNELLRISDPFLEKYDSTCVRQAK 266 (2341)
T ss_pred CChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999998776644321 11222222211112111100 1111000
Q ss_pred HHH---------------HHHhhhcccc-ccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q 001749 442 ALA---------------AFCEDMGEEI-LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (1018)
Q Consensus 442 al~---------------~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~ 505 (1018)
... .++...+..+ ..|+...+..++..+. .+...++..|+.++-+.+..+.+|...+...
T Consensus 267 ~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~~~~~~~~i~~ia~al~~~~~~~~~~~~~~ 342 (2341)
T KOG0891|consen 267 GKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILR----KEKTRAFVSIGEIAVALGSSMSPYLSNILDH 342 (2341)
T ss_pred HHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhh----ccchhHHHHHHHHHHHhhhhhhhhhcchhhh
Confidence 000 0000000000 1344455555555444 2226778889999999998888888775555
Q ss_pred HHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccch
Q 001749 506 LKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYL 585 (1018)
Q Consensus 506 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 585 (1018)
+.+.+...+-.....-...+.|++.++.++|+..+......++..+...-. .+.+++ ++-.++..++ +..
T Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~~~--~~~l~e----~l~~l~~rl~----~l~ 412 (2341)
T KOG0891|consen 343 IRQTLPTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFKCTL--SDSLLE----RLFILSQRIP----KLG 412 (2341)
T ss_pred hhhcchhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcCCc--hHHHHH----HHHHHHHhcc----chh
Confidence 555443321111111224567888888888886666665777766544322 233333 3444444332 223
Q ss_pred hhhhHHHHhhccCC-CCCccCCCCCchhhcccCCCCCCCcchhhcccccceeeeccc-chhHHHHHHHHHHHHHHccccC
Q 001749 586 PLVVPLAFSSCNLD-DGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGV-LDEKAAATQALGLFALHTKSSY 663 (1018)
Q Consensus 586 ~~i~~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~-~~~k~~a~~~l~~~~~~~~~~~ 663 (1018)
+.+.+.++...+.- -+...-.... ..-.+.+..- +...-.++. -+.-.-|.+.++.+...... .
T Consensus 413 ~~i~~rll~~~~~vl~~~a~~~~~~-~~vl~~~~~p------------~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~ 478 (2341)
T KOG0891|consen 413 QSIQDRLLNMTSQVLSGKAFIQPGQ-FTVLPKLAIP------------KAILQKTGDSTDDIQLAFKTLGGFKFSGYS-L 478 (2341)
T ss_pred hHHHHHHHHHHHHHHhCccccCccc-cCccchhccc------------chhhhhcccccHHHHHHHHHHhhhhhhhhh-H
Confidence 34444444322100 0000000000 0000000000 000000000 00122344444443332110 0
Q ss_pred cchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHHHh
Q 001749 664 APFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGY-MAVEPYMSRLVDATLLLLR 742 (1018)
Q Consensus 664 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~-~~~~~~~~~i~~~l~~~l~ 742 (1018)
.-+++ .+.+ .+....+.++.......+..+++.... .-..+..-+.+.. ++.
T Consensus 479 ~~~~~--------------------~~~~----~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~---vl~ 531 (2341)
T KOG0891|consen 479 TLFVQ--------------------QCVD----SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKE---VLS 531 (2341)
T ss_pred HHHHH--------------------HHHH----HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHH---HHH
Confidence 01111 1122 222234445554443333333332111 0001111111222 222
Q ss_pred hhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHH--HHHHHHHhhccCCCccchhhhhHhHHH
Q 001749 743 EESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAK--LFDPLMKFAKSSRPLQDRTMVVATLAE 820 (1018)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~r~~a~~~l~~ 820 (1018)
....|.....+. ... -.+...++..|.+...+ .+-..+-.+.+.. ...+..+...++.
T Consensus 532 ~ll~~aia~~~~--------~i~-----------~~v~~~l~~~~~~~laQ~~~lr~~~~al~~~~-l~~~~~~~~~ig~ 591 (2341)
T KOG0891|consen 532 ALLTVAIADTDP--------DIR-----------IRVLSSLNERFDAQLAQPDLLRLLFIALHDEN-FAIQELATVIIGR 591 (2341)
T ss_pred HHHHHhccCCCc--------chh-----------hhHHhhhccchhhhhcCchhHHHHHHHhhhhh-hhhHHhHHhhccc
Confidence 222222111111 011 11111222222222211 1111222222222 2334444445544
Q ss_pred HHhhcCcchHhhHHhhHHHHHHhcC-CCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHHH
Q 001749 821 VARDMGSPIAAYVDRVMPLVLKELA-SPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAA 899 (1018)
Q Consensus 821 ~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~ 899 (1018)
+....+..+.+++.........-+. +.-.-+...++.-+..++.....-+.+|..+++..+.+.+.+.+ ..+..++.
T Consensus 592 l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~--s~~~~~~~ 669 (2341)
T KOG0891|consen 592 LSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPS--SGVEKAVL 669 (2341)
T ss_pred cccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccc--hhhHHHHH
Confidence 4433222233333333333333332 33344555555656666665555567888888888888776433 45566777
Q ss_pred HHHHHHHHhCCCCC--ChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhh--hhhhHHHHHHHHHhcCCCCCh
Q 001749 900 GAVARMIMVNPQSI--PLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQIL--SLVPELVNLFAEVVVSPEESS 975 (1018)
Q Consensus 900 ~al~~l~~~~~~~~--~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~--~~~~~il~~~~~~~~~~~~~~ 975 (1018)
.+++.+....+... +++..++.+.+.+........+..+.+.+..+.+...=.+. ..-|.+++.+...+..+.. .
T Consensus 670 ~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~-~ 748 (2341)
T KOG0891|consen 670 ETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQS-S 748 (2341)
T ss_pred HHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhh-h
Confidence 88888887766333 35677777777776656666777888888888764433333 3567777777777654322 2
Q ss_pred HHHHHHHHHHH
Q 001749 976 EVKSQVGMAFS 986 (1018)
Q Consensus 976 ~~~~~~~~~l~ 986 (1018)
-.+..+++.+.
T Consensus 749 ~ir~~~v~~~g 759 (2341)
T KOG0891|consen 749 TIRREAIRLLG 759 (2341)
T ss_pred HHHHHHHHHhh
Confidence 34444444443
No 111
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=98.06 E-value=0.00016 Score=65.32 Aligned_cols=154 Identities=18% Similarity=0.312 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHcc--cCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhh-hhhhccc
Q 001749 78 LVKQSLIESITLEH-SAPVRRASANVVSIIAKY--AVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLT-ETIGQTF 153 (1018)
Q Consensus 78 ~i~~~Ll~~l~~e~-~~~vr~~~~~~l~~i~~~--~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~-~~~~~~~ 153 (1018)
.||+.|+.+|..+. ....-+.++++++.++.. ..+++.|+++.+.+..... ++ -..|+.+|..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~-~e---~~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE-NE---PVKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc-cc---hHHHHHHHHhCCchhhhhHH
Confidence 58899999998653 344667777777777653 2456899999988877552 22 267889999888 6677888
Q ss_pred cccHHHHHHHHHHhcCCCCCHHHH--HHHH-HHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCH-HHHHHHHHH
Q 001749 154 RPHFADMQALLLKCLQDETSNRVR--IAAL-KAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAFEI 229 (1018)
Q Consensus 154 ~~~~~~l~~~l~~~l~d~~~~~vr--~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~a~~~ 229 (1018)
.++++.+++.+.+.|.++.+.++. ..|+ .++...+.....+.....+++++|.+++.+.+..+.+.+ .....+++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 899999999999999884333343 4444 333445555554445677899999999999999888777 777888877
Q ss_pred HHHHhc
Q 001749 230 FDELIE 235 (1018)
Q Consensus 230 l~~l~~ 235 (1018)
+..++.
T Consensus 159 ~e~~v~ 164 (174)
T PF04510_consen 159 FESFVS 164 (174)
T ss_pred HHHHHH
Confidence 766654
No 112
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.049 Score=62.83 Aligned_cols=164 Identities=11% Similarity=0.176 Sum_probs=115.5
Q ss_pred CCChHHHHHHHHHH-HHHhcCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhc
Q 001749 14 MPDNDARRQAEDQI-KRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (1018)
Q Consensus 14 s~d~~~r~~A~~~L-~~~~~~p~~~~~l~~~l~~--~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e 90 (1018)
|.+...|..|-+.+ .++....+.-..+..++.. +.+.+++++.-.++.+.-. ..|+..-...+.+.+.+. +
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak-----~~P~~~lLavNti~kDl~-d 103 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAK-----LKPELALLAVNTIQKDLQ-D 103 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhhcc-C
Confidence 44555666666655 5666554544444455443 6689999999888887743 233444555566667776 5
Q ss_pred CCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCC
Q 001749 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQD 170 (1018)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 170 (1018)
+++.+|..+.+.++.+-.. .-|+.+++.+.+++.++++.+|..|..++..+.+...+.+... .....+...+.|
T Consensus 104 ~N~~iR~~AlR~ls~l~~~----el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~--g~~~~l~~l~~D 177 (757)
T COG5096 104 PNEEIRGFALRTLSLLRVK----ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL--GLIDILKELVAD 177 (757)
T ss_pred CCHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc--cHHHHHHHHhhC
Confidence 9999998888888876543 3689999999999999999999999999999986555322111 134455556667
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 001749 171 ETSNRVRIAALKAIGSFLEF 190 (1018)
Q Consensus 171 ~~~~~vr~~a~~~l~~~~~~ 190 (1018)
+++.|...|+.++..+..-
T Consensus 178 -~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 178 -SDPIVIANALASLAEIDPE 196 (757)
T ss_pred -CCchHHHHHHHHHHHhchh
Confidence 8999999998888776544
No 113
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.024 Score=63.72 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcc-----cCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCC
Q 001749 97 RASANVVSIIAKY-----AVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE 171 (1018)
Q Consensus 97 ~~~~~~l~~i~~~-----~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~ 171 (1018)
+.+++++..+... .++..+-.+++=.+..++++.+...|.....++..+.....+.+ -+...+..-.+.
T Consensus 38 r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi-----ivtsslmkD~t~- 111 (865)
T KOG1078|consen 38 RKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI-----IVTSSLMKDMTG- 111 (865)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh-----hhhHHHHhhccC-
Confidence 4455666655432 12233456677778888889998888888888777754333221 112222222333
Q ss_pred CCHHHHHHHHHHHHHhhccc
Q 001749 172 TSNRVRIAALKAIGSFLEFT 191 (1018)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~ 191 (1018)
.+...|..|+++|..++...
T Consensus 112 ~~d~yr~~AiR~L~~I~d~~ 131 (865)
T KOG1078|consen 112 KEDLYRAAAIRALCSIIDGT 131 (865)
T ss_pred CCcchhHHHHHHHHhhcCcc
Confidence 45678888898888877644
No 114
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.03 E-value=2.4e-05 Score=73.56 Aligned_cols=128 Identities=29% Similarity=0.396 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhc----------------ccccc
Q 001749 93 APVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ----------------TFRPH 156 (1018)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~----------------~~~~~ 156 (1018)
+.||+++|.+++.|+.+++| ..||++++.+.+.+++ ++.....++.+|..+.+...+ .+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 57899999999999999999 5899999999999987 577888999999999987653 12334
Q ss_pred HHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001749 157 FADMQALLLKCLQDETS---NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIF 230 (1018)
Q Consensus 157 ~~~l~~~l~~~l~d~~~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l 230 (1018)
.+.+++.+.+.+....+ ..+...+++|+.+++.+.+.. .+.+ ..+++.+.+.++ +++.+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~----~i~~--~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE----LIIN--SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH----HHHS--SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH----Hhcc--HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 56677777777764222 788999999999999987521 1111 124444444563 445577777765
No 115
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.02 E-value=0.0051 Score=71.13 Aligned_cols=369 Identities=15% Similarity=0.172 Sum_probs=211.1
Q ss_pred CCHHHHHHHHHHHHHHHcccCCC--CCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhc
Q 001749 91 HSAPVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCL 168 (1018)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~--~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 168 (1018)
.+..+| .+..++..++...... -.-.++++.|..++++++.+....++.+|..+.-.....-.-.-..+++.+.+.+
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 444454 5556677776532110 0125678889999998888888888888888763321110111234677777888
Q ss_pred CCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC--ccch--hHh
Q 001749 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP--APLL--GDS 244 (1018)
Q Consensus 169 ~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~--~~~ 244 (1018)
.. ++..++..++++|.++.....-.. .-.-.+++|.++..+ .+ +..+..++.+|..+.... ...| ...
T Consensus 341 ~s-~~~~l~~~aLrlL~NLSfd~~~R~-~mV~~GlIPkLv~LL----~d--~~~~~val~iLy~LS~dd~~r~~f~~Tdc 412 (708)
T PF05804_consen 341 PS-ENEDLVNVALRLLFNLSFDPELRS-QMVSLGLIPKLVELL----KD--PNFREVALKILYNLSMDDEARSMFAYTDC 412 (708)
T ss_pred cC-CCHHHHHHHHHHHHHhCcCHHHHH-HHHHCCCcHHHHHHh----CC--CchHHHHHHHHHHhccCHhhHHHHhhcch
Confidence 77 788899999999998865432111 111245888888764 33 345556777787776532 1122 123
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHH--HhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHH
Q 001749 245 VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEV 322 (1018)
Q Consensus 245 ~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~--~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~ 322 (1018)
++.++..++. + .++.+...++.++..++..... .+...+.++.++.. .....+ ......
T Consensus 413 Ip~L~~~Ll~---~--~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~r----a~~~~D----------~lLlKl 473 (708)
T PF05804_consen 413 IPQLMQMLLE---N--SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKR----ALKTRD----------PLLLKL 473 (708)
T ss_pred HHHHHHHHHh---C--CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHH----HHhccc----------HHHHHH
Confidence 4444444332 1 2333444455555555543221 12222223333322 222111 223456
Q ss_pred HHHHHHHcc--hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh--HHHHHhHH--HHHHHHHhhcCCC--ChhH
Q 001749 323 IDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--EWMKEKLE--SVLHIVLGALRDP--EQFV 394 (1018)
Q Consensus 323 l~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~--~l~~~l~~~l~d~--~~~V 394 (1018)
+..++.+-| +..+...+.-+...+.+.+ .-+..+.++|.++.-.. ..+...+. .++|.+...|... ++.+
T Consensus 474 IRNiS~h~~~~k~~f~~~i~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl 551 (708)
T PF05804_consen 474 IRNISQHDGPLKELFVDFIGDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDL 551 (708)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHH
Confidence 677776664 2333333333333344433 34566777777776421 12223332 5777777777533 4567
Q ss_pred HHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHhccCC--ChHHHHHHHHHHHHHHhhhc--cccccchHHHHHHHHHh
Q 001749 395 RGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDE--SDEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAA 468 (1018)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~--~~~v~~~a~~al~~l~~~~~--~~~~~~~~~l~~~l~~~ 468 (1018)
...++..+|.++.. +.....+ ..+++.++..|... +.+..-..+.++..|+.+-. +.+.. -..+...++.+
T Consensus 552 ~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~-~~~~~~ylidL 628 (708)
T PF05804_consen 552 LLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLK-ETEIPAYLIDL 628 (708)
T ss_pred HHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHh-ccchHHHHHHH
Confidence 78888999988865 3334433 47788887777644 35566667777777776532 22211 13577889999
Q ss_pred hcCCCHhHHHHHHHHHHHHHHHhh
Q 001749 469 LENSPRNLQETCMSAIGSVAAAAE 492 (1018)
Q Consensus 469 l~~~~~~vr~~al~al~~l~~~~~ 492 (1018)
+.+.+..+|..+=.++..++..-+
T Consensus 629 ~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 629 MHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhCH
Confidence 999999999998888887776543
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.02 E-value=0.00011 Score=70.79 Aligned_cols=146 Identities=19% Similarity=0.260 Sum_probs=104.3
Q ss_pred cchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHH-HHHHHhhhhccCC
Q 001749 809 QDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYY-GDILRGLYPLFGD 887 (1018)
Q Consensus 809 ~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~-~~il~~L~~~l~~ 887 (1018)
.+|..++.++|+++...+..+. ..+|.+.++|.|+++.||.+|+.++..++...--.+.+.+ ..++. ++
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~----~l-- 72 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVE----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILK----LL-- 72 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHH----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH----HH--
Confidence 4689999999999987655444 4578888999999999999999999999987544333333 44443 34
Q ss_pred CCCCchhHhHHHHHHHHHHHh-CCCCCChhhHHHHHHhhCCC--------CCcHHhhHHHHHHHHHHHhhcChhhhhhhh
Q 001749 888 SEPDDAVRDNAAGAVARMIMV-NPQSIPLNQVLPVLLKVLPL--------KEDFEESMAVYNCISTLVLSSNPQILSLVP 958 (1018)
Q Consensus 888 ~~~~~~~~~na~~al~~l~~~-~~~~~~~~~~l~~~l~~lp~--------~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~ 958 (1018)
.++++.+++.|..++..+... +|..+ ...+|..+..|.. ..+.+....+++++...+.+ ..+-.+.+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i--~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~ 149 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNII--YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVE 149 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHH
Confidence 356789999999999999988 56554 6666666666543 35567778888888887752 344445555
Q ss_pred HHHHHHHHH
Q 001749 959 ELVNLFAEV 967 (1018)
Q Consensus 959 ~il~~~~~~ 967 (1018)
++++-+...
T Consensus 150 kl~~~~~~~ 158 (178)
T PF12717_consen 150 KLCQRFLNA 158 (178)
T ss_pred HHHHHHHHH
Confidence 555544444
No 117
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.01 E-value=0.011 Score=65.04 Aligned_cols=467 Identities=15% Similarity=0.124 Sum_probs=234.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHh--cCC--------CcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhccCCHHHH
Q 001749 8 LLIQFLMPDNDARRQAEDQIKRLA--KDP--------QVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (1018)
Q Consensus 8 ~l~~~~s~d~~~r~~A~~~L~~~~--~~p--------~~~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~l~~~~~ 76 (1018)
.+..+.++|++..=+|--....+. .++ +.+..++.+++.. ..+....-.++++.....+.-.....-.+
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 345566788887655555554332 111 2355666666542 23444434445555554433233333344
Q ss_pred HHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHcccC--CC---CCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhh
Q 001749 77 QLVKQSLIESITLEHS-APVRRASANVVSIIAKYAV--PA---GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (1018)
Q Consensus 77 ~~i~~~Ll~~l~~e~~-~~vr~~~~~~l~~i~~~~~--~~---~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 150 (1018)
...-..|++.+. +++ ..++....+++..|....- +. ..-..+++.+.....-+...............+....
T Consensus 94 ~~~ll~Ll~LLs-~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~ 172 (678)
T KOG1293|consen 94 IIELLKLLQLLS-ESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKD 172 (678)
T ss_pred HhhHHHHHHHhc-CcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccch
Confidence 555667788777 466 7899999999999876431 10 1112234444333331111111111122222221111
Q ss_pred ccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HhhcccCChhhHH-----HHHhhHHHHHHHHHHHhhcCCHHH
Q 001749 151 QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIG---SFLEFTNDGAEVV-----KFREFIPSILNVSRQCLASGEEDV 222 (1018)
Q Consensus 151 ~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~---~~~~~~~~~~~~~-----~~~~~~~~ll~~l~~~l~~~~~~~ 222 (1018)
.+..-+-..+.+-+.-++.. -+..+|.+|+.+++ +++...+. .... .-..+.+++ .+.+...+++...
T Consensus 173 hq~Il~Na~i~ekI~~l~~~-~s~~~RlaaL~~~sr~~~iL~Nn~~-~sm~~l~~L~d~~v~~r~--~v~rL~k~~~~s~ 248 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMY-LSSKLRLAALLCLSRGDRILRNNPL-GSMFLLGLLKDKGVNIRC--VVTRLLKDPDFSE 248 (678)
T ss_pred hhheeccccchhhHHHHHHh-hhHHHHHHHHHHhhccceeeecCch-hHHHHHHHHhccccchhh--hhhhhhhCCCccH
Confidence 11111112222222222322 45689999999999 44433321 1000 111222221 2334566777777
Q ss_pred HHHHHHHHHHHhcCC--------ccchhHhH-HHHHHHHHHHhcCCCCChHHHHHHHH-----HHHHHHHHhHHHhhhcC
Q 001749 223 AVIAFEIFDELIESP--------APLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQ-----IISWLAKYKYNSLKKHK 288 (1018)
Q Consensus 223 ~~~a~~~l~~l~~~~--------~~~~~~~~-~~li~~l~~~~~~~~~~~~~r~~a~~-----~l~~~~~~~~~~~~~~~ 288 (1018)
+-.++.++..+.... +..+.+.- ..++++-.....+ ++.++..+.. .+..+++.-........
T Consensus 249 ~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~---~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~ 325 (678)
T KOG1293|consen 249 RLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMN---DPGLSTLDHTNVLFCILARFASKLQLPQHEEA 325 (678)
T ss_pred HHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeec---CCceeehhhhhhhHHHHHHHHHhhhhHHhhhh
Confidence 888888888887644 22222221 1122221111111 1222222111 11222221100000000
Q ss_pred ChHHHHHHHhhh--hccCCCCCCCCCCcHHHHHH---HHHHHHHHHcc----hhchHH-HHHHHHhhhcCCChhHHHHHH
Q 001749 289 LVIPILQVMCPL--LAESNEAGEDDDLAPDRAAA---EVIDTMALNLA----KHVFPP-VFEFASVSCQNASPKYREAAV 358 (1018)
Q Consensus 289 ~~~~i~~~l~~~--l~~~~~d~~d~~~~~~~~a~---~~l~~l~~~~~----~~~~~~-~~~~l~~~l~~~~~~~r~aal 358 (1018)
-.+.+.+.++-. ++...+ ..+..+. ..+..++...+ +++... +...+....-..+...+.||+
T Consensus 326 ~~~~~~ellf~~~sl~a~~~-------~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~ 398 (678)
T KOG1293|consen 326 TLKTTTELLFICASLAASDE-------KYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAAL 398 (678)
T ss_pred hhhhHHHHHHHHHHHhhcch-------hhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHH
Confidence 111111111110 111111 1111110 01111111111 222221 222222222335567788999
Q ss_pred HHHHHHhhcChHHHH--HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhccCCChHH
Q 001749 359 TAIGIISEGCAEWMK--EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEV 435 (1018)
Q Consensus 359 ~~l~~l~~~~~~~~~--~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v 435 (1018)
.++-.++..... +. ..-.++...+++.+.||...|..++..++..++-.+++.-..++ ...+..+.+.+.++++.+
T Consensus 399 l~~~s~srsV~a-L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~ 477 (678)
T KOG1293|consen 399 LCLKSFSRSVSA-LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNS 477 (678)
T ss_pred HHHHHHHHHHHH-HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchH
Confidence 888777654221 11 11234566667777999999999999999999988876444444 578899999999999999
Q ss_pred HHHHHHHHHHHHhhhccc--cccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001749 436 KEKSYYALAAFCEDMGEE--ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1018)
Q Consensus 436 ~~~a~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~ 490 (1018)
|..+.++|..+.-++.+. ..++-.--...+....+++++.|+++++..+-.+.-.
T Consensus 478 r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 478 RANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999999999988777543 3455555566777788899999999999998877644
No 118
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.05 Score=60.79 Aligned_cols=488 Identities=13% Similarity=0.102 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCC--ChHHHH-HHHHHHHHhhhhhhcc-
Q 001749 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHRE-VALILFSSLTETIGQT- 152 (1018)
Q Consensus 77 ~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~--~~~~r~-~al~~l~~l~~~~~~~- 152 (1018)
..+++.+.+.+. .++.+|+.+-..+-.+- +-|.++-.+.+.+.++ +..++. ++++.=+.+.......
T Consensus 3 ~ellqcf~qTld--ada~~rt~AE~~Lk~le-------KqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~ 73 (970)
T COG5656 3 EELLQCFLQTLD--ADAGKRTIAEAMLKDLE-------KQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKR 73 (970)
T ss_pred HHHHHHHHHHhc--cCcchhhHHHHHHHHhh-------cCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcc
Confidence 456666666665 57888877765554433 4577888888877654 345555 4455445555444321
Q ss_pred ---c----cccH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHH
Q 001749 153 ---F----RPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAV 224 (1018)
Q Consensus 153 ---~----~~~~-~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~ 224 (1018)
. .+.. .-++..+...+.. ++.+-..+..+....+-..+.+ ...+. +.|...+. +.+++.....
T Consensus 74 d~~i~~Dek~e~K~~lienil~v~l~--sp~~tr~~l~ail~~I~seD~p--s~~wg-l~p~~~nl----l~s~ea~~vy 144 (970)
T COG5656 74 DDGIKADEKSEAKKYLIENILDVFLY--SPEVTRTALNAILVNIFSEDKP--SDLWG-LFPKAANL----LRSSEANHVY 144 (970)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHhccccCc--hhhcc-cchHHHHh----hcccchhHHH
Confidence 1 1111 2233333333333 2333334555555544333221 11222 55655554 5666767777
Q ss_pred HHHHHHHHHhcCC-------ccchhHhHHHHHHHHHHHhcCCCC-----ChHHHHHHHHHHHH-HHHHhHHHhhhcCChH
Q 001749 225 IAFEIFDELIESP-------APLLGDSVKSIVHFSLEVSSSHNL-----EPNTRHQAIQIISW-LAKYKYNSLKKHKLVI 291 (1018)
Q Consensus 225 ~a~~~l~~l~~~~-------~~~~~~~~~~li~~l~~~~~~~~~-----~~~~r~~a~~~l~~-~~~~~~~~~~~~~~~~ 291 (1018)
.++-|+.++.... .....+.+..+.+.+.++.++-.. ..++-...+..... +...-|..+.....+.
T Consensus 145 ~gLlcl~elfkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~ 224 (970)
T COG5656 145 TGLLCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFS 224 (970)
T ss_pred HHHHHHHHHHHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhH
Confidence 7888888887643 223344555555666555443211 11222222222221 2222233333333444
Q ss_pred HHHHHHhhhhccCCCC------CCC---CCC-cHHHHHHHHHHHHHHHcch---------------hch----HHHHHHH
Q 001749 292 PILQVMCPLLAESNEA------GED---DDL-APDRAAAEVIDTMALNLAK---------------HVF----PPVFEFA 342 (1018)
Q Consensus 292 ~i~~~l~~~l~~~~~d------~~d---~~~-~~~~~a~~~l~~l~~~~~~---------------~~~----~~~~~~l 342 (1018)
+.+...+.+++..-.. -++ +-| ...+-|.-.+.++...+++ ..+ ..++..+
T Consensus 225 sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqi 304 (970)
T COG5656 225 SWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQI 304 (970)
T ss_pred HHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555443211 000 111 1233455555555444331 112 2233333
Q ss_pred HhhhcCCChhHHHHHHHHHHHHhhcCh------HHHHHhHHHHHH-HHHhhcC-----------CCChhHHH--------
Q 001749 343 SVSCQNASPKYREAAVTAIGIISEGCA------EWMKEKLESVLH-IVLGALR-----------DPEQFVRG-------- 396 (1018)
Q Consensus 343 ~~~l~~~~~~~r~aal~~l~~l~~~~~------~~~~~~l~~l~~-~l~~~l~-----------d~~~~Vr~-------- 396 (1018)
..+-+.+-|-. ...+..++...+.|. ..+.||+.-++. .+++++. ||...+|.
T Consensus 305 e~wgqgqLWls-d~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g 383 (970)
T COG5656 305 EEWGQGQLWLS-DIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNG 383 (970)
T ss_pred HHhhcCCeecc-hHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCC
Confidence 44444555533 334555666565543 456677776665 5555542 34444442
Q ss_pred -----HHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccC--------CChHHHHHHHHHHHHHHhhh--ccccccchH-H
Q 001749 397 -----AASFALGQFAEYLQPEIVSHYESVLPCILNALED--------ESDEVKEKSYYALAAFCEDM--GEEILPFLD-P 460 (1018)
Q Consensus 397 -----~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~--------~~~~v~~~a~~al~~l~~~~--~~~~~~~~~-~ 460 (1018)
+|+.++-.+...-+ ...+..+++.+...|.. .+.+-.+.|...++++..-. ...+...++ -
T Consensus 384 ~spdlaal~fl~~~~sKrk---e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~f 460 (970)
T COG5656 384 LSPDLAALFFLIISKSKRK---EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYF 460 (970)
T ss_pred CChhHHHHHHHHHHhcccc---hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHH
Confidence 34444444433322 23466777777776631 12345567788787777622 122222233 2
Q ss_pred HHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHh-hhhhh
Q 001749 461 LMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAES-VGRAR 539 (1018)
Q Consensus 461 l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~-~g~~~ 539 (1018)
+++.+...++++..-+|.+++..++.+-.-.++. ....+......+.+.+. ...++-.|..++..+... -..+.
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~nn---~lpv~ieAalAlq~fi~~~q~h~k 535 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKNN---HLPVMIEAALALQFFIFNEQSHEK 535 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhcC---CcchhhhHHHHHHHHHhchhhhHH
Confidence 4556666778888889999999998883333321 12233444444445442 223333333333333321 12347
Q ss_pred cCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHHh
Q 001749 540 MEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFS 594 (1018)
Q Consensus 540 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~ 594 (1018)
+..|+++.|+.++..-+.=+. +..-.++..++..+.++..||-+.++..+.+
T Consensus 536 ~sahVp~tmekLLsLSn~fei---D~LS~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 536 FSAHVPETMEKLLSLSNTFEI---DPLSMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HHhhhhHHHHHHHHhcccccc---hHHHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 889999999998874332122 2244577788888999999998888777655
No 119
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.98 E-value=0.11 Score=66.72 Aligned_cols=276 Identities=8% Similarity=0.096 Sum_probs=157.7
Q ss_pred CChhHHHHHHHHHHHhhhhhhc--cCC-HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccC--CCCCccchHHH
Q 001749 48 KTPNVRQLAAVLLRKKITGHWA--KLS-PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAV--PAGEWPDLLPF 122 (1018)
Q Consensus 48 ~~~~~R~~a~~~l~~~i~~~w~--~l~-~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~--~~~~w~~ll~~ 122 (1018)
.+..++.+|.-.||+.-.+... .++ -..+..+.+.+...+.+..+..+|..+.+|+..+..... -+..|+.++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 3677888888888877554322 222 123445555555666666788999999999998764322 23689999999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhhhhhcccc----ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccC------
Q 001749 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFR----PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN------ 192 (1018)
Q Consensus 123 l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~------ 192 (1018)
+.....++++.....|+.++..+++..-..+. ..+..++..+........+.++-..|+..+..+..+..
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~ 1308 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS 1308 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc
Confidence 99888888888899999999998866433222 34455555555554432234444455555443311110
Q ss_pred ----C----------------hh-----hH-HHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccch-----
Q 001749 193 ----D----------------GA-----EV-VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL----- 241 (1018)
Q Consensus 193 ----~----------------~~-----~~-~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~----- 241 (1018)
. .. .. ....-++| ++..+.....+.+.++|..|+..|-++...+...|
T Consensus 1309 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W 1387 (1780)
T PLN03076 1309 SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLW 1387 (1780)
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 0 00 00 01122344 44444455667889999999999888876554443
Q ss_pred hHhHHHHHHHHHHHhcCC---------------------CCChHHHHHHHHHHHHHHHHhHHHhhhc-CChHHHHHHHhh
Q 001749 242 GDSVKSIVHFSLEVSSSH---------------------NLEPNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCP 299 (1018)
Q Consensus 242 ~~~~~~li~~l~~~~~~~---------------------~~~~~~r~~a~~~l~~~~~~~~~~~~~~-~~~~~i~~~l~~ 299 (1018)
...+..++-.++..+... +.+.-....+...+..+++....++... ..++.++..+..
T Consensus 1388 ~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ 1467 (1780)
T PLN03076 1388 ERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVS 1467 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333210 0011123334444444444433333211 144445554444
Q ss_pred hhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 001749 300 LLAESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (1018)
Q Consensus 300 ~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~ 331 (1018)
..+... ....+.+..||..+....|
T Consensus 1468 ci~q~n-------~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1468 FIKRPH-------QSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHcCch-------HHHHHHHHHHHHHHHHHhh
Confidence 444432 3677888899998887666
No 120
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.98 E-value=0.00053 Score=69.14 Aligned_cols=190 Identities=14% Similarity=0.148 Sum_probs=121.6
Q ss_pred HHHHhhhc-CCChhHHHHHHHHHHHHhhcCh--HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCH--HHH
Q 001749 340 EFASVSCQ-NASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--EIV 414 (1018)
Q Consensus 340 ~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~ 414 (1018)
+.+...++ +.++..++.++.+++..+.... +.+.. -..++.+...+.++++.+|..|++++..++..... .++
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~--~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD--LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH--cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 33334454 5688999999999999766432 22211 13578899999999999999999999999876432 334
Q ss_pred HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc
Q 001749 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1018)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~ 494 (1018)
.|++.+...+... ..+..+|..+..+|.++.-. +.....+...++.++.++.+++..+|.+++.++..++....-
T Consensus 93 ~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~- 167 (254)
T PF04826_consen 93 MYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM- 167 (254)
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH-
Confidence 4556665555442 22457888999999988532 222333455677788889999999999999999988754321
Q ss_pred chhhH-HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhh
Q 001749 495 FIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (1018)
Q Consensus 495 ~~~~~-~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~ 538 (1018)
....+ .+..+.+..++....+.+ ..-+++..+..+...++++
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~--~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKE--NLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccH--HHHHHHHHHHHHHHhhCcc
Confidence 11111 234444555554443333 2234566666666655543
No 121
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.06 Score=59.25 Aligned_cols=145 Identities=18% Similarity=0.223 Sum_probs=114.5
Q ss_pred HHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHH
Q 001749 3 QSLELLLIQFL-MPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1018)
Q Consensus 3 ~~l~~~l~~~~-s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 81 (1018)
.+|+.+-+.++ |.|+..|.+||..|.++..+|+.+..+.-++..+..|-...+|+..|.+.+.++- .++-+++-.|++
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~ 83 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRN 83 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHH
Confidence 46777788885 6799999999999999999999999998888887788889999999999988764 789999999999
Q ss_pred HHHHHHhhc-C--CHHHHHHHHHHHHHHHcccCCCC-----CccchHHHHHHhhcCCChHHHHHHHHHHHHhhhh
Q 001749 82 SLIESITLE-H--SAPVRRASANVVSIIAKYAVPAG-----EWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (1018)
Q Consensus 82 ~Ll~~l~~e-~--~~~vr~~~~~~l~~i~~~~~~~~-----~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~ 148 (1018)
-+++.+.+- + .+.|...+++.++.+.+..|-.. .+.+.+..+...++..+.++...|+.++..+...
T Consensus 84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqe 158 (1082)
T KOG1410|consen 84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQE 158 (1082)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 999999862 2 45688899999999988665321 2355666666666666566666666666666544
No 122
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.89 E-value=0.002 Score=67.64 Aligned_cols=199 Identities=18% Similarity=0.177 Sum_probs=143.5
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhHhh-cCH-HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc--ccccc
Q 001749 381 HIVLGALRDPEQFVRGAASFALGQFAEY-LQP-EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--EEILP 456 (1018)
Q Consensus 381 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~-~~~-~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~--~~~~~ 456 (1018)
...+..+.+.+...|.+++..+.++... ..+ .+......++..+.+.++....+-+..|+.+++-++-.+| .....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 3344555678899999999988887643 233 3446678899999999988776667778888888887764 55567
Q ss_pred chHHHHHHHHHhhcCC--CHhHHHHHHHHHHHHHHHhhccchhhHH--HHHHHHHH--HHhccC-------chhhhhHHH
Q 001749 457 FLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAE--RVLELLKI--FMVLTN-------DEDLRSRAR 523 (1018)
Q Consensus 457 ~~~~l~~~l~~~l~~~--~~~vr~~al~al~~l~~~~~~~~~~~~~--~i~~~l~~--~l~~~~-------~~~~~~r~~ 523 (1018)
.+..+.+.|.+.+.+. ...+|..++.|+|.++-..+.+...+.. ..+..+.. ...... .+...+...
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 7888888888888876 4578889999999888777765443331 23331111 111111 112347788
Q ss_pred HHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHccc
Q 001749 524 ATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED 579 (1018)
Q Consensus 524 a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 579 (1018)
|+.+++.+...+....+..++...++.+...++.++.++|-.+-.+++-+.+...+
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999988876556667778888888889988999999998888888776654
No 123
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.013 Score=64.34 Aligned_cols=289 Identities=17% Similarity=0.149 Sum_probs=165.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHh----hh
Q 001749 211 SRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL----KK 286 (1018)
Q Consensus 211 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~----~~ 286 (1018)
+.....+.|..++..|.+.|..+.+ ..++-+. +.+...+.++ |.++.+|..|+.++.-.....|... ..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~----~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKA----CYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc-cccccHH----HHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 3344677888999999999988887 2222222 2333334444 3477899999887665554442110 01
Q ss_pred cCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCC--hh---HHHHHHHHH
Q 001749 287 HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS--PK---YREAAVTAI 361 (1018)
Q Consensus 287 ~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~---~r~aal~~l 361 (1018)
.......+..++..+.+ -+|.+|..|...++.+-..-.. + +.+.+.+-+-+.. |+ .|-..+..=
T Consensus 276 ~kl~D~aF~~vC~~v~D-------~sl~VRV~AaK~lG~~~~vSee-~---i~QTLdKKlms~lRRkr~ahkrpk~l~s~ 344 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRD-------RSLSVRVEAAKALGEFEQVSEE-I---IQQTLDKKLMSRLRRKRTAHKRPKALYSS 344 (823)
T ss_pred hhhHHHHHHHHHHHHhc-------CceeeeehHHHHhchHHHhHHH-H---HHHHHHHHHhhhhhhhhhcccchHHHHhc
Confidence 11333444444444443 3477888887777766543222 2 2223322222211 11 111222222
Q ss_pred HHHhhcC-------hHHHHHhHHHHH-----HHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhcc
Q 001749 362 GIISEGC-------AEWMKEKLESVL-----HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE 429 (1018)
Q Consensus 362 ~~l~~~~-------~~~~~~~l~~l~-----~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~ 429 (1018)
|.-+.|- .+.....-..++ ..++.+|.|+--.||.+|...++.++..-+ .+-...+..|+..++
T Consensus 345 GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP----~FA~~aldfLvDMfN 420 (823)
T KOG2259|consen 345 GEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP----GFAVRALDFLVDMFN 420 (823)
T ss_pred CCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC----CcHHHHHHHHHHHhc
Confidence 2111111 111111122333 346778899999999999999999987643 244567888889999
Q ss_pred CCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 001749 430 DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIF 509 (1018)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~ 509 (1018)
|....||..|..+|..+.... ..=++.++.++..+.+.+.++|+.+-..++..--. -...++-++..+...
T Consensus 421 DE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~----d~~~i~m~v~~lL~~ 491 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNARVS----DLECIDMCVAHLLKN 491 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHH
Confidence 998899999999999988873 12245677888888999999999887776543111 112333344444444
Q ss_pred HhccCchhhhhHHHHHHHHHHHHHh
Q 001749 510 MVLTNDEDLRSRARATELLGLVAES 534 (1018)
Q Consensus 510 l~~~~~~~~~~r~~a~~~l~~l~~~ 534 (1018)
+..... -|.....|++.++..
T Consensus 492 L~kyPq----Drd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 492 LGKYPQ----DRDEILRCMGRIGQN 512 (823)
T ss_pred hhhCCC----CcHHHHHHHHHHhcc
Confidence 443311 122455677777653
No 124
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.86 E-value=0.013 Score=63.58 Aligned_cols=351 Identities=16% Similarity=0.151 Sum_probs=183.0
Q ss_pred CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhc---cCCHH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 001749 34 PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWA---KLSPQ--LKQLVKQSLIESITLEHSAPVRRASANVVSIIAK 108 (1018)
Q Consensus 34 p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~---~l~~~--~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~ 108 (1018)
|.++..++.++.....+.+.++..+++--.+...-. .+-+. .....-..++..|.+ .+..+...++.+++.++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHh
Confidence 568888999988877899999999988887764211 11000 001122344455554 688999999999999876
Q ss_pred ccCCCCCccchH----HHHHHhhcCC-ChHHHHHHHHHHHHhhhhhh--ccccccHHHHHHHHHHhcCCCC-CHHHHHHH
Q 001749 109 YAVPAGEWPDLL----PFLFQFSQSE-QEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCLQDET-SNRVRIAA 180 (1018)
Q Consensus 109 ~~~~~~~w~~ll----~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~d~~-~~~vr~~a 180 (1018)
.... ..-...+ +.+...++++ +......++.++..+...-. ..+.. ...++.+...|.... +.+....+
T Consensus 131 ~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 131 FGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred cCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHHHHH
Confidence 5321 1222233 3444444443 35667788888888874322 11111 113445555554323 45666666
Q ss_pred HHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc--hhHhHHHHHH----HHHH
Q 001749 181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL--LGDSVKSIVH----FSLE 254 (1018)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~li~----~l~~ 254 (1018)
+-|+= +++|.++......-.+++|.+++++... ..+.+.+-++.+|.+++...... -......++. .+++
T Consensus 208 ll~lW-lLSF~~~~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~ 283 (429)
T cd00256 208 IFCIW-LLTFNPHAAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQ 283 (429)
T ss_pred HHHHH-HHhccHHHHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHH
Confidence 55542 2333322111222246888888876554 34567777888888888643111 0111122221 1222
Q ss_pred HhcCCCCChHHHHHHHHHHHHHHHHhHHHhhh-cCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchh
Q 001749 255 VSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK-HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH 333 (1018)
Q Consensus 255 ~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (1018)
.+......++--...++++....+..-+.... ..|...+ --+.| +|++.+........=+..+.+.
T Consensus 284 ~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El---~sg~L----------~WSp~H~se~FW~EN~~kf~~~ 350 (429)
T cd00256 284 SLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSEL---RSGRL----------HWSPVHKSEKFWRENADRLNEK 350 (429)
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH---hcCCc----------cCCCCCCCchHHHHHHHHHHhc
Confidence 33333344444445566665555433221110 0112111 11112 1232221111111111111111
Q ss_pred chHHHHHHHHhhh-cCCChhHHHHHHHHHHHHhhcChH--HHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001749 334 VFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCAE--WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1018)
Q Consensus 334 ~~~~~~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 407 (1018)
-+ .++..+.+.+ ++.++..-..||.-+|.++...+. .+...+. .=..++..+.++++.||+.|+.|++.+..
T Consensus 351 ~~-~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 351 NY-ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred ch-HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 2223333334 356677778888889998887542 2222111 23468888999999999999999998854
No 125
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.85 E-value=6.4e-05 Score=63.01 Aligned_cols=85 Identities=25% Similarity=0.440 Sum_probs=66.5
Q ss_pred HHHHhhh-cCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh
Q 001749 340 EFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1018)
Q Consensus 340 ~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1018)
+.+.+.+ ++++|..|..++.+++.+.. +..++.+...++|+++.||.+|+++++.+.. +
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIGD----------P 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------H
Confidence 3444555 89999999999999984421 3678888888899999999999999998842 3
Q ss_pred hHHHHHHHhccCCC-hHHHHHHHHHHH
Q 001749 419 SVLPCILNALEDES-DEVKEKSYYALA 444 (1018)
Q Consensus 419 ~~l~~l~~~l~~~~-~~v~~~a~~al~ 444 (1018)
..++.+.+.+.+++ ..||..|..+|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 57788888887654 557898988875
No 126
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.81 E-value=0.00023 Score=66.12 Aligned_cols=122 Identities=21% Similarity=0.333 Sum_probs=96.5
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHhh-hccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHH---HHHhh
Q 001749 417 YESVLPCILNALEDESDEVKEKSYYALAAFCED-MGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV---AAAAE 492 (1018)
Q Consensus 417 ~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l---~~~~~ 492 (1018)
++..+|.++..|.+....-+--|...+..+++. .++.+.|.++.++..+...|++.++.|...++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 567899999999988777778888889999988 67889999999999999999999999999999999999 67778
Q ss_pred ccchhhHHHHHHHHHHHHhcc----Cc----hhhhhHHHHHHHHHHHHHhhhhh
Q 001749 493 QAFIPYAERVLELLKIFMVLT----ND----EDLRSRARATELLGLVAESVGRA 538 (1018)
Q Consensus 493 ~~~~~~~~~i~~~l~~~l~~~----~~----~~~~~r~~a~~~l~~l~~~~g~~ 538 (1018)
+.+.||+.+++|.+.-+.... +. ....++...-+++..+-+.-|++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 999999999999988655432 10 11123444445666665555553
No 127
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.78 E-value=0.011 Score=64.98 Aligned_cols=305 Identities=15% Similarity=0.229 Sum_probs=162.7
Q ss_pred CccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHHhhcc
Q 001749 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ----ALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (1018)
Q Consensus 115 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~----~~l~~~l~d~~~~~vr~~a~~~l~~~~~~ 190 (1018)
.-..++..|+..+..++....+-.++++..++....+.+.++...++ .++.....+++++..-...+++++.++++
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 34667788888776544333455666666666666666566655554 44444556656888889999999999988
Q ss_pred cCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc-cchhHhHHHHHHHHHHHhcCCCCChHHHHHH
Q 001749 191 TNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269 (1018)
Q Consensus 191 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a 269 (1018)
..+. .......+-+.++..+...++.+-.+-.-.++++|..+.+.++ .-+.+.+..+++.++.-.--. ....+ ...
T Consensus 103 ~~~~-~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe-~~gni-Pal 179 (435)
T PF03378_consen 103 VCEA-DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWE-RRGNI-PAL 179 (435)
T ss_dssp S-GG-GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGG-STTTH-HHH
T ss_pred ccCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhc-cCCCc-CcH
Confidence 6432 2232233444455555555666666777888999999988765 333333334444333211111 11112 334
Q ss_pred HHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc----hhchHHHHHHHHhh
Q 001749 270 IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVS 345 (1018)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~ 345 (1018)
..++..+.+..+..+...+.+.+++...-.++.... ....|...|..+...++ +..++.++..+-+.
T Consensus 180 vrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~---------~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~R 250 (435)
T PF03378_consen 180 VRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA---------NDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTR 250 (435)
T ss_dssp HHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT---------CHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC---------cchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 467778888777776655678888877766665432 23457788999988888 34566666666555
Q ss_pred hc-CCChhHHHHHHHHHHHHhh-cChHHHHHhHH--------HHHH-HHHhhcCC-CChhHHHHHHHHHHHhHhhcCHHH
Q 001749 346 CQ-NASPKYREAAVTAIGIISE-GCAEWMKEKLE--------SVLH-IVLGALRD-PEQFVRGAASFALGQFAEYLQPEI 413 (1018)
Q Consensus 346 l~-~~~~~~r~aal~~l~~l~~-~~~~~~~~~l~--------~l~~-~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~ 413 (1018)
++ +..++.+..-+..++.++. ..++.+...++ .++. .+++.++. ..+.-|..++-.+.++....+...
T Consensus 251 Lq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~ 330 (435)
T PF03378_consen 251 LQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFL 330 (435)
T ss_dssp HHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHH
T ss_pred HhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhh
Confidence 54 5555555554444443332 12222222222 2222 22333332 345567777777777654433222
Q ss_pred H---HhhhhHHHHHHHhccCC
Q 001749 414 V---SHYESVLPCILNALEDE 431 (1018)
Q Consensus 414 ~---~~~~~~l~~l~~~l~~~ 431 (1018)
. ..+..+++.+++.+..+
T Consensus 331 ~~~~~~w~~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 331 SEYSQLWPPLLEALLKLLERP 351 (435)
T ss_dssp HH-CHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHcCC
Confidence 2 34566666776666654
No 128
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.78 E-value=0.00098 Score=62.87 Aligned_cols=135 Identities=22% Similarity=0.286 Sum_probs=113.5
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHH-HHhhhhHHHHHHHhccCCCh-HHHHHHHHHHHHHHhhhc
Q 001749 374 EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI-VSHYESVLPCILNALEDESD-EVKEKSYYALAAFCEDMG 451 (1018)
Q Consensus 374 ~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~~l~~~~~-~v~~~a~~al~~l~~~~~ 451 (1018)
..+..++..+...++++++.-|+.++..++..++.++.++ ..+....+..+++.++.+++ .+...++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567788889999999999999999999999999986555 47889999999999987764 478889999999987662
Q ss_pred -------cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 001749 452 -------EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (1018)
Q Consensus 452 -------~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l 510 (1018)
+...|.++.+++.+++++++ ......++.++..+....+..|.||..++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 23568999999999999886 6778899999999999999999999988776665543
No 129
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0036 Score=70.64 Aligned_cols=219 Identities=18% Similarity=0.220 Sum_probs=148.2
Q ss_pred ChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHH
Q 001749 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEF 341 (1018)
Q Consensus 262 ~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 341 (1018)
...+|..++..+..+++++.+.-. -....++...+..+.+ +|..++-.+.+.+..++..+++.++|.+...
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~--~~~ekvl~i~ld~Lkd-------edsyvyLnaI~gv~~Lcevy~e~il~dL~e~ 810 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATL--IQGEKVLAIALDTLKD-------EDSYVYLNAIRGVVSLCEVYPEDILPDLSEE 810 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhh--hhHHHHHHHHHHHhcc-------cCceeeHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 345778888888888775422111 1334556666666653 3446777888888899999998888877764
Q ss_pred HHhhhcCC--ChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhh
Q 001749 342 ASVSCQNA--SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (1018)
Q Consensus 342 l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (1018)
-...-+.. +.+.|-+ .+++.++....+-...+...++...+++.+||+..-|..++..+|.+|....-...+.+..
T Consensus 811 Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 33222222 3333333 6777777777777778888999999999999999999999999999998765444556666
Q ss_pred HHHHHHHhcc-CCChHHHHHHHHHHHHHHhhhccccccchH----HHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHHh
Q 001749 420 VLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLD----PLMGKLLAALENS-PRNLQETCMSAIGSVAAAA 491 (1018)
Q Consensus 420 ~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~----~l~~~l~~~l~~~-~~~vr~~al~al~~l~~~~ 491 (1018)
++..++.... |.+..+|.+|...+..+..+.+..+.|++. +....+.+..... +..++-.+..++-.+-.+.
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 6666655444 556789999999999999999988877553 3344444443333 4456666666665544433
No 130
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.76 E-value=0.00013 Score=61.05 Aligned_cols=86 Identities=26% Similarity=0.428 Sum_probs=69.0
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccch
Q 001749 380 LHIVLGAL-RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (1018)
Q Consensus 380 ~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 458 (1018)
++.+++.+ +|+++.||..++++++++.. +.++|.+...+.|+++.||..|+.+|+.+- -
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 46677777 89999999999999995532 267888888899999999999999999762 2
Q ss_pred HHHHHHHHHhhcCC-CHhHHHHHHHHHH
Q 001749 459 DPLMGKLLAALENS-PRNLQETCMSAIG 485 (1018)
Q Consensus 459 ~~l~~~l~~~l~~~-~~~vr~~al~al~ 485 (1018)
+..++.|.+.+.++ +..+|..++.+||
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45777888888775 5677999999886
No 131
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.74 E-value=0.0012 Score=63.51 Aligned_cols=110 Identities=17% Similarity=0.262 Sum_probs=88.3
Q ss_pred ChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhc
Q 001749 391 EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE 470 (1018)
Q Consensus 391 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~ 470 (1018)
||.||..++.++|.++...+. .+++.+|.+...|.|+++.||..|+.++..++.. .....-+.++..+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHc
Confidence 688999999999999988754 5567788899999999999999999999998865 344445667778888889
Q ss_pred CCCHhHHHHHHHHHHHHHHH-hhccchhhHHHHHHHHH
Q 001749 471 NSPRNLQETCMSAIGSVAAA-AEQAFIPYAERVLELLK 507 (1018)
Q Consensus 471 ~~~~~vr~~al~al~~l~~~-~~~~~~~~~~~i~~~l~ 507 (1018)
++++.+|..|...+..+... .+..+...+++++..+.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999999887 55555555555554443
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.16 Score=58.72 Aligned_cols=142 Identities=14% Similarity=0.161 Sum_probs=89.5
Q ss_pred CccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCCh
Q 001749 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG 194 (1018)
Q Consensus 115 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~ 194 (1018)
..+.++|.++..+.+.+.+.+.....-+....+..|+. .--.++.+..-+.| +++.+|..|++.++.+=.
T Consensus 52 dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~----~lLavNti~kDl~d-~N~~iR~~AlR~ls~l~~----- 121 (757)
T COG5096 52 DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL----ALLAVNTIQKDLQD-PNEEIRGFALRTLSLLRV----- 121 (757)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhccC-CCHHHHHHHHHHHHhcCh-----
Confidence 46778888887777777777776666666666555421 11234566666777 788888888887655421
Q ss_pred hhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHh-HHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 001749 195 AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDS-VKSIVHFSLEVSSSHNLEPNTRHQAIQII 273 (1018)
Q Consensus 195 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~li~~l~~~~~~~~~~~~~r~~a~~~l 273 (1018)
..+++.++..+.+++.++++.+|+.|.-++.++.+..+.++... ...+...+. . |.++.+...|+-.+
T Consensus 122 ------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~---~--D~dP~Vi~nAl~sl 190 (757)
T COG5096 122 ------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELV---A--DSDPIVIANALASL 190 (757)
T ss_pred ------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHh---h--CCCchHHHHHHHHH
Confidence 23566666667777788888888888888888877666555443 333333222 2 34666666666555
Q ss_pred HHHH
Q 001749 274 SWLA 277 (1018)
Q Consensus 274 ~~~~ 277 (1018)
..+.
T Consensus 191 ~~i~ 194 (757)
T COG5096 191 AEID 194 (757)
T ss_pred HHhc
Confidence 4443
No 133
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.014 Score=62.13 Aligned_cols=262 Identities=16% Similarity=0.164 Sum_probs=148.6
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHH
Q 001749 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (1018)
Q Consensus 119 ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 198 (1018)
++..+.+-..+++...|..++.+++...+..++....|.+.++..+..+|-|+.+.+|...+++++..+.+.....
T Consensus 259 ~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~---- 334 (533)
T KOG2032|consen 259 VLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND---- 334 (533)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc----
Confidence 3444444455677889999999999999988888888999999999999988678899999999999888765421
Q ss_pred HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc----cchhH-hHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 001749 199 KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA----PLLGD-SVKSIVHFSLEVSSSHNLEPNTRHQAIQII 273 (1018)
Q Consensus 199 ~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~----~~~~~-~~~~li~~l~~~~~~~~~~~~~r~~a~~~l 273 (1018)
....++-.+.-.+.....+.+++.+..++..++.++.... .+|.. ....+.++++.+ . +..+.+-..+-..+
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl-~--d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL-Q--DPNPYVARACRSEL 411 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee-C--CCChHHHHHHHHHH
Confidence 1222333333335566778889999999888888875432 22222 222333343322 2 22333322221111
Q ss_pred HHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHH---hhhcCCC
Q 001749 274 SWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFAS---VSCQNAS 350 (1018)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~---~~l~~~~ 350 (1018)
..+. |....+ -+...++-..+. +.. .........+..+. ...+.++.++. ..+-+..
T Consensus 412 ~~c~---p~l~rk------e~~~~~q~~ld~--------~~~--~~q~Fyn~~c~~L~-~i~~d~l~~~~t~~~~~f~ss 471 (533)
T KOG2032|consen 412 RTCY---PNLVRK------ELYHLFQESLDT--------DMA--RFQAFYNQWCIQLN-HIHPDILMLLLTEDQHIFSSS 471 (533)
T ss_pred HhcC---chhHHH------HHHHHHhhhhHH--------hHH--HHHHHHHHHHHHHh-hhCHHHHHHHHHhchhheecc
Confidence 1111 111111 111111100000 011 11122222111111 11222222221 1233456
Q ss_pred h-hHHHHHHHHHHHHhhcChHHHHHh--HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001749 351 P-KYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1018)
Q Consensus 351 ~-~~r~aal~~l~~l~~~~~~~~~~~--l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 407 (1018)
| .+|.++...-+.......+..-++ ...+...+.....|+-|.|+..|..+++.+..
T Consensus 472 we~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 472 WEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 7 788888877777666554444333 34566677777789999999999999998764
No 134
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0023 Score=72.14 Aligned_cols=195 Identities=17% Similarity=0.180 Sum_probs=144.1
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchH
Q 001749 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD 459 (1018)
Q Consensus 380 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 459 (1018)
+...+..+.|+.+.+|..++..+..+.+.-.+.-...-..++...+..+.|.++-|--+|...+..+|+..++.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i----- 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI----- 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh-----
Confidence 555667788999999999999999999854333334556899999999999999999999999999999876654
Q ss_pred HHHHHHHHh-hc---CCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhh
Q 001749 460 PLMGKLLAA-LE---NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (1018)
Q Consensus 460 ~l~~~l~~~-l~---~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~ 535 (1018)
++.+... .+ ......|-.+-++|+.++.+-|+-+..|+..++......+. +++.+.|..++..+|.++...
T Consensus 804 --l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 804 --LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred --HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHHHHH
Confidence 3444432 22 22245566666999999999999999999977766655544 456677888888888887654
Q ss_pred hhhhcCCChHHHHHHHHhccC-CCChhHHHHHHHHHHHHHHHcccCcccch
Q 001749 536 GRARMEPILPPFVEAAISGFG-LEFSELREYTHGFFSNIAGVLEDGFAQYL 585 (1018)
Q Consensus 536 g~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 585 (1018)
.. .....+.++...++...+ +++..+|+++...+..+-...|.+..|++
T Consensus 879 a~-~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 879 AF-QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred hh-hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 21 222355666666666555 44677999999999999999998877754
No 135
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.45 Score=63.25 Aligned_cols=118 Identities=17% Similarity=0.338 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhhhh--hccccccHHHHHHHHHHhcCCC--------CCHHHHHHHHHHHHHhhcccCChhhHHHHHh
Q 001749 133 EHREVALILFSSLTETI--GQTFRPHFADMQALLLKCLQDE--------TSNRVRIAALKAIGSFLEFTNDGAEVVKFRE 202 (1018)
Q Consensus 133 ~~r~~al~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l~d~--------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 202 (1018)
..|..-+.-++...+.. ++... .+..++|.+...+.+. +..+.|..+++.+.++... ..++.
T Consensus 22 ~~klk~~~E~~~~le~~~~~~~~~-~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~-------e~~~~ 93 (3550)
T KOG0889|consen 22 ESKLKMLVEIRDFLENLFSPESYL-FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHN-------EVFKP 93 (3550)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccH-------HHHHH
Confidence 33444444444444442 23333 5677788888777642 3456888888887776543 23566
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcC
Q 001749 203 FIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSS 258 (1018)
Q Consensus 203 ~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~ 258 (1018)
+...++.++.+.+..++++.+..|++++..+.....+.++.++..++.+..++..+
T Consensus 94 ~~~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~~~~~~~v~~fl~~V~~ly~~ 149 (3550)
T KOG0889|consen 94 FSQELLKVLMRVLTNDNEENAILCLKIITDLFRQFKSLVEQHVQPFLDIVIDLYKN 149 (3550)
T ss_pred HHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh
Confidence 67777777777788899999999999999999888888888888888877766543
No 136
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.71 E-value=0.17 Score=58.24 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHH
Q 001749 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (1018)
Q Consensus 79 i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 158 (1018)
+...+...+..+....+++.+++.+..+..+....+.+++.+..|...+.++-...|..++..|+.+.-.-+..+ ....
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~-~~~~ 655 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLF-SLSS 655 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhh-hhhH
Confidence 445666677666677899999999988776654446778888888889988888888888888888765544433 2223
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 001749 159 DMQALLLKCLQDETSNRVRIAALKAIGSFL 188 (1018)
Q Consensus 159 ~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~ 188 (1018)
..+-.+...+.| ....|...|+..+..+.
T Consensus 656 ~wl~~li~~~~d-~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 656 KWLHTLISMLND-TESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 334455556666 66678888887766553
No 137
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.71 E-value=0.15 Score=57.62 Aligned_cols=299 Identities=15% Similarity=0.130 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCC-ChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCC
Q 001749 94 PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET 172 (1018)
Q Consensus 94 ~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 172 (1018)
.-|-.+++-++...... +-..-+++......++..+ ..+.|..++..+..+++.-.......-..++..+...-.+ +
T Consensus 5 ~~R~~a~~~l~~~i~~~-~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~-~ 82 (464)
T PF11864_consen 5 SERIKAAEELCESIQKY-PLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND-D 82 (464)
T ss_pred HHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc-h
Confidence 34555666666544432 2134455555555555544 3578999999999998765432221112222222221112 3
Q ss_pred CHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHh----------h-------------cCCHHHHHHHHHH
Q 001749 173 SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL----------A-------------SGEEDVAVIAFEI 229 (1018)
Q Consensus 173 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l----------~-------------~~~~~~~~~a~~~ 229 (1018)
+...|..|+.+|. ....+-. .-..++.|.+...+.... . +.+.......+..
T Consensus 83 d~~~~l~aL~~LT---~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 157 (464)
T PF11864_consen 83 DFDLRLEALIALT---DNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQF 157 (464)
T ss_pred hHHHHHHHHHHHH---cCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHH
Confidence 4456666666554 3222110 001223333333332222 0 0123345567788
Q ss_pred HHHHhcCCccchh-HhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCC
Q 001749 230 FDELIESPAPLLG-DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAG 308 (1018)
Q Consensus 230 l~~l~~~~~~~~~-~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~ 308 (1018)
+..+.......+. ..+..++..++.++.+......+ ..++.++..++.+.. .....+.+++.++....+..
T Consensus 158 l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~~---iP~~sl~~~i~vLCsi~~~~---- 229 (464)
T PF11864_consen 158 LVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYGD---IPSESLSPCIEVLCSIVNSV---- 229 (464)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcCc---CChHHHHHHHHHHhhHhccc----
Confidence 8888888777665 77888888888887766444333 678888888876421 11124455555555543322
Q ss_pred CCCCCcHHHHHHHHHHHHH-HHcchhchHHHHHHH--HhhhcCCChhHHHHHHHHHHHHhhcChHH----HHHhHHHHHH
Q 001749 309 EDDDLAPDRAAAEVIDTMA-LNLAKHVFPPVFEFA--SVSCQNASPKYREAAVTAIGIISEGCAEW----MKEKLESVLH 381 (1018)
Q Consensus 309 ~d~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~l--~~~l~~~~~~~r~aal~~l~~l~~~~~~~----~~~~l~~l~~ 381 (1018)
+..+.+-+++..|. .+.|...+..+...+ ...-...+...-.+|+..++.+.-+..+. +.-....+++
T Consensus 230 -----~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~ 304 (464)
T PF11864_consen 230 -----SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLP 304 (464)
T ss_pred -----ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHH
Confidence 23344556677666 344555565565555 22223356677789999998887765221 1111234888
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhH-hhcCHH
Q 001749 382 IVLGALRDPEQFVRGAASFALGQFA-EYLQPE 412 (1018)
Q Consensus 382 ~l~~~l~d~~~~Vr~~a~~~l~~l~-~~~~~~ 412 (1018)
.+...++..+++|-...+.++..+. ..++..
T Consensus 305 sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~ 336 (464)
T PF11864_consen 305 SLLNALKSNSPRVDYEILLLINRLLDGKYGRE 336 (464)
T ss_pred HHHHHHhCCCCeehHHHHHHHHHHHhHhhhhh
Confidence 9999999888888888888888877 544443
No 138
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.3 Score=60.95 Aligned_cols=213 Identities=15% Similarity=0.108 Sum_probs=134.2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHH-HHHHHHHHHHHHhhhccccc-cc
Q 001749 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEV-KEKSYYALAAFCEDMGEEIL-PF 457 (1018)
Q Consensus 380 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v-~~~a~~al~~l~~~~~~~~~-~~ 457 (1018)
+..+...+..++|..|.++..++++++...+. .++...+....+..+.+..+.+ |..-.-+++.+-+..+.-.. .+
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 44667778889999999999999999987654 3455666777777777665444 45567778888877755332 45
Q ss_pred hHHHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHH------HH
Q 001749 458 LDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELL------GL 530 (1018)
Q Consensus 458 ~~~l~~~l~~~l~~~-~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l------~~ 530 (1018)
+..-+..++..-+++ .+.|+..++.+++.++...+..+.-|....+..+..++-........++..--+|+ +.
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~a 1035 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDA 1035 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHH
Confidence 666566677666666 56999999999999999999888888877777777666543222222221111222 36
Q ss_pred HHHhhhhhhcCCC--------hHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHHhhc
Q 001749 531 VAESVGRARMEPI--------LPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (1018)
Q Consensus 531 l~~~~g~~~~~~~--------~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~ 596 (1018)
+...+|++.-.+. -...+-...-.+..+++.+...++.|+..+..--+. .-.++.+++.+...+
T Consensus 1036 littlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1036 LITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLL 1107 (2067)
T ss_pred HHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHh
Confidence 6666666432111 111111111123344667778888888888653332 223455666665544
No 139
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0016 Score=64.73 Aligned_cols=145 Identities=18% Similarity=0.206 Sum_probs=121.3
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHH
Q 001749 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL 421 (1018)
Q Consensus 342 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l 421 (1018)
....+.+.+|.....++..+..+++..++.+.+.+..++-.+.+.++++...|-.+||.+++.+.+.....+...++.++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457899999999999999999999999999999999999999999999999999999999999998887777777777
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh
Q 001749 422 PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (1018)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~ 492 (1018)
..|+..-...+..|++.|-.+|..++.+... ..+++.|...+++..+.+|..+..++.......+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 7777666666677999999999999887633 2366777777888888888888877776666655
No 140
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.64 E-value=0.0079 Score=61.29 Aligned_cols=239 Identities=9% Similarity=0.083 Sum_probs=157.4
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHhhcChHH-H-HHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh
Q 001749 341 FASVSCQNASPKYREAAVTAIGIISEGCAEW-M-KEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1018)
Q Consensus 341 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~-~-~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1018)
.+.+++.++++..|..|+..|+.+.+..+.. + ...+..++.+....+.| +..+..+ +.++..+...- .--.....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~-~~~~~~~~ 79 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMK-NFSPESAV 79 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCc-CCChhhHH
Confidence 3557789999999999999999999887743 3 33467788888888854 4445444 77777776331 11122345
Q ss_pred hHHHHHHHhccCC--ChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHHhhccc
Q 001749 419 SVLPCILNALEDE--SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAF 495 (1018)
Q Consensus 419 ~~l~~l~~~l~~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~al~~l~~~~~~~~ 495 (1018)
.++..+.+...-+ ....|..+...+..++++....+...-+..+..+++..+.. ++.--..+++.+..+..... +
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~ 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c
Confidence 5666666544432 24578889999999998887777666778888888888765 56655566666655555544 3
Q ss_pred hhhHHHHHHHHHHHHhc-----cCchhh----hhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHH
Q 001749 496 IPYAERVLELLKIFMVL-----TNDEDL----RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYT 566 (1018)
Q Consensus 496 ~~~~~~i~~~l~~~l~~-----~~~~~~----~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 566 (1018)
.++.+++...+.-++-. .+++.. .++....+|++. ... +.+..++.+++.+.++.+.++..+
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s------~~~---fa~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS------TPL---FAPFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC------cHh---hHHHHHHHHHHHHcCCCcHHHHHH
Confidence 55666666666555432 122211 133222233221 112 345667777888888888899999
Q ss_pred HHHHHHHHHHcccC-cccchhhhhHHHH
Q 001749 567 HGFFSNIAGVLEDG-FAQYLPLVVPLAF 593 (1018)
Q Consensus 567 ~~~l~~l~~~~~~~-~~~~l~~i~~~ll 593 (1018)
+.++...+..+|.. +.+|...+...+-
T Consensus 229 L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 229 LQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999864 7788877776654
No 141
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.63 E-value=0.29 Score=58.46 Aligned_cols=180 Identities=18% Similarity=0.224 Sum_probs=112.1
Q ss_pred CCcc--chHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccc-cHHHHH---------HHHHHhcCCCCCHHHHHHHH
Q 001749 114 GEWP--DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP-HFADMQ---------ALLLKCLQDETSNRVRIAAL 181 (1018)
Q Consensus 114 ~~w~--~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~---------~~l~~~l~d~~~~~vr~~a~ 181 (1018)
++|| .++..|...+-++.|..|+++..++..+.+..++.+.. .++.++ ..+-....+..-..||.++.
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 5775 46778888888899999999999999998776544322 122222 12222333333567999999
Q ss_pred HHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCC
Q 001749 182 KAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL 261 (1018)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~ 261 (1018)
++++.+..+... ..+...++.+.+....++++.+.+.+..+........+.+...++.+++++++.+.+ .
T Consensus 151 q~L~~~l~~~~~--------s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~d--s 220 (1549)
T KOG0392|consen 151 QALGAYLKHMDE--------SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLED--S 220 (1549)
T ss_pred HHHHHHHHhhhh--------HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--c
Confidence 999999988742 133334444444455556777766655555544433333345555556666655553 4
Q ss_pred ChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCC
Q 001749 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (1018)
Q Consensus 262 ~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~ 305 (1018)
++.+|..|..++..+++...+.... -+..+++.+...+.+.+
T Consensus 221 ~ddv~~~aa~~l~~~~s~~v~l~~~--~i~~lv~~l~~~l~~ld 262 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQVKLMVQ--KIAKLVHTLWSFLLELD 262 (1549)
T ss_pred chHHHHHHHHHhhhhhHHHHhhhHh--HHHHHHHHHHHHHHHhh
Confidence 6788999999888887765433222 45566666666665543
No 142
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.63 E-value=0.013 Score=61.69 Aligned_cols=186 Identities=20% Similarity=0.190 Sum_probs=131.7
Q ss_pred hcCCChhHHHHHHHHHHHHhhc--ChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcC--HHHHHhhhhHH
Q 001749 346 CQNASPKYREAAVTAIGIISEG--CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSHYESVL 421 (1018)
Q Consensus 346 l~~~~~~~r~aal~~l~~l~~~--~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~~~~~~~~~~l 421 (1018)
+.+.....|.+++..+..+... ..+.+..+...+++.+.++++-....-+..|+.+++-++-.++ ......++.+.
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~ 131 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELK 131 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Confidence 4556688999999888776643 4567777788999999999987777777788899999988865 55567888999
Q ss_pred HHHHHhccCCC--hHHHHHHHHHHHHHHhhhccccccch--HHHHHHHHHh--hcC----------CCHhHHHHHHHHHH
Q 001749 422 PCILNALEDES--DEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAA--LEN----------SPRNLQETCMSAIG 485 (1018)
Q Consensus 422 ~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~~~~--~~l~~~l~~~--l~~----------~~~~vr~~al~al~ 485 (1018)
|.|.+.+.|.. ..+|..++.+|+-++-..+.....+. -..++.++.. .+. ++..+...|+.+.+
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 99999888775 35667777788776654433322211 1334433222 111 13568999999999
Q ss_pred HHHHHhhc-cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHh
Q 001749 486 SVAAAAEQ-AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAES 534 (1018)
Q Consensus 486 ~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~ 534 (1018)
.++..++. .+..+....+|.|...+... +..+|..|-++++.+...
T Consensus 212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~---d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLLEEALPALSELLDSD---DVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHH
Confidence 99988875 45666778888888887643 455677777777776543
No 143
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.62 E-value=0.018 Score=59.87 Aligned_cols=155 Identities=14% Similarity=0.054 Sum_probs=104.1
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh---HHH-HHhHHHHHHHHHh-hcCCCChhHHHHHHHHHHHhHhhcC
Q 001749 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCA---EWM-KEKLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~-~~~l~~l~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
|.+++++..++.|.+.....++..++|..+..-. ..+ ...+..++..+.+ .--|.+.+++.+++.++..++.-..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 5588999999999999999999999999998633 111 1235566666655 3347889999999999999876443
Q ss_pred HHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcccccc--chHHHHHHHHHhhcCCCHh-HHHHHHHHHHH
Q 001749 411 PEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP--FLDPLMGKLLAALENSPRN-LQETCMSAIGS 486 (1018)
Q Consensus 411 ~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~-vr~~al~al~~ 486 (1018)
.. ..+. ..+...++..+.-..|+|.-.-...+..+....+..... --+.++.+|...-.+++.. |-......+..
T Consensus 394 nk-a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~ 472 (604)
T KOG4500|consen 394 NK-AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG 472 (604)
T ss_pred ch-hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence 21 1122 356777777777777788766666666555544321111 1246777887777776654 66666666666
Q ss_pred HHHHh
Q 001749 487 VAAAA 491 (1018)
Q Consensus 487 l~~~~ 491 (1018)
+++..
T Consensus 473 lIkHs 477 (604)
T KOG4500|consen 473 LIKHS 477 (604)
T ss_pred HHHhh
Confidence 66653
No 144
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.60 E-value=0.00079 Score=62.68 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhccCCCccchhhhhHhHHHHHhh-cCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHH---Hhhc
Q 001749 791 FAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARD-MGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGEL---CKNG 866 (1018)
Q Consensus 791 ~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l---~~~~ 866 (1018)
+...+|.+..-++....+ .|..|...+.++++. ++..+.|.++++++++-++|++.+++|..++..+|-.+ ....
T Consensus 36 y~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 446777778877766543 488999999999999 77789999999999999999999999999999999999 4455
Q ss_pred CcchhhHHHHHHHhhhhc
Q 001749 867 GESALKYYGDILRGLYPL 884 (1018)
Q Consensus 867 ~~~~~~~~~~il~~L~~~ 884 (1018)
|+.+.||+.++++.+.-.
T Consensus 115 G~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLF 132 (183)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 678899999999998633
No 145
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.59 E-value=0.027 Score=57.42 Aligned_cols=245 Identities=18% Similarity=0.194 Sum_probs=143.8
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhH
Q 001749 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (1018)
Q Consensus 164 l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 243 (1018)
+-..|++ +++.+|..|+.+|+.++...+.... -.+-+..+++.....+ .|......++..+..++.. ..+-..
T Consensus 4 Lg~~Lts-ed~~~R~ka~~~Ls~vL~~lp~~~L---~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~-~~~~~~ 76 (262)
T PF14500_consen 4 LGEYLTS-EDPIIRAKALELLSEVLERLPPDFL---SRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKM-KNFSPE 76 (262)
T ss_pred hhhhhCC-CCHHHHHHHHHHHHHHHHhCCHhhc---cHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhC-cCCChh
Confidence 3456788 8999999999999999988863210 1123444555554455 3556666678888888733 333344
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHH
Q 001749 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVI 323 (1018)
Q Consensus 244 ~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l 323 (1018)
....+++.+++-...+......|..+.+++..+.+........ .-...+..++..+..
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~--~~~~fv~~~i~~~~g-------------------- 134 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS--MGDDFVYGFIQLIDG-------------------- 134 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh--chhHHHHHHHHHhcc--------------------
Confidence 4556666555433333445677888989888888765543322 111222222222211
Q ss_pred HHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc--------CCCChhHH
Q 001749 324 DTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL--------RDPEQFVR 395 (1018)
Q Consensus 324 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l--------~d~~~~Vr 395 (1018)
..|++.---+...+..+..... +.+..+++++.+..++ +|+....|
T Consensus 135 ------------------------EkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~ 188 (262)
T PF14500_consen 135 ------------------------EKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITR 188 (262)
T ss_pred ------------------------CCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCH
Confidence 1122222222222222222211 1234455555555543 35544455
Q ss_pred HHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc-cccccchHHHHHHHHH
Q 001749 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLA 467 (1018)
Q Consensus 396 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~l~~~l~~ 467 (1018)
..-..+|....... + .+.+..+|.+++.|.+..+.++.-++.+|...+...+ +.+.+|...++..+..
T Consensus 189 edLk~~L~~cl~s~-~---~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 189 EDLKRALRNCLSST-P---LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHhcCc-H---hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 55444444443321 1 3456889999999999999999999999999999885 4577898888887753
No 146
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.22 Score=56.05 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=56.4
Q ss_pred hhhhhHhHHHHHhhcCcc--hHhhHHhhHHHHHH--hcCCCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhcc
Q 001749 811 RTMVVATLAEVARDMGSP--IAAYVDRVMPLVLK--ELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLF 885 (1018)
Q Consensus 811 r~~a~~~l~~~~~~~~~~--~~~~~~~l~~~l~~--~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l 885 (1018)
+...+-.+--++++..-. -..+++-++..++. ++.+.+..||..|.|-..+.++..+..+.||..+++..+..++
T Consensus 507 ~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 507 ELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556553211 23467777777764 6778899999999999999999988888899999998887777
No 147
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.58 E-value=0.036 Score=70.94 Aligned_cols=356 Identities=15% Similarity=0.165 Sum_probs=199.2
Q ss_pred ccCCHHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHcccCC--CCCccchHHHHHH----hhcCCChHHHHHHHH
Q 001749 69 AKLSPQLKQLVKQSLIESITLE--HSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQ----FSQSEQEEHREVALI 140 (1018)
Q Consensus 69 ~~l~~~~~~~i~~~Ll~~l~~e--~~~~vr~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~----~~~s~~~~~r~~al~ 140 (1018)
..++.+....+...|.+.-..| ....=|.-.-+-+..++.+... .-.|+.+...+.. ...+++...+..|+.
T Consensus 1080 ~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAid 1159 (1780)
T PLN03076 1080 QKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMD 1159 (1780)
T ss_pred ccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 3466666655555555432222 0011133333334444433221 1356665444444 333445566667777
Q ss_pred HHHHhhhhhhc--ccc--ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhh
Q 001749 141 LFSSLTETIGQ--TFR--PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA 216 (1018)
Q Consensus 141 ~l~~l~~~~~~--~~~--~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 216 (1018)
.|.+++-.+-+ .+. .+-..++..|...+.+..+.+||...++|+..++.... ..++.=.+.++.++.....
T Consensus 1160 sLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-----~nIkSGWktIF~VLs~aa~ 1234 (1780)
T PLN03076 1160 SLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-----NNVKSGWKSMFMVFTTAAY 1234 (1780)
T ss_pred HHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-----hhhhcCcHHHHHHHHHHHh
Confidence 77777654321 111 12245666666666654788999999999999987653 2344456667777766677
Q ss_pred cCCHHHHHHHHHHHHHHhcCCccch----hHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHH-h----h--
Q 001749 217 SGEEDVAVIAFEIFDELIESPAPLL----GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-L----K-- 285 (1018)
Q Consensus 217 ~~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~-~----~-- 285 (1018)
++.+.....+++.+..+....-..+ ...+..++..+.+.+.+. .+.++-..|++++..++..-... . .
T Consensus 1235 d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~ 1313 (1780)
T PLN03076 1235 DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FNKDISLNAIAFLRFCATKLAEGDLGSSSRNK 1313 (1780)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-CcccccHHHHHHHHHHHHHHHhcccccccccc
Confidence 7788899999999988875432211 256677777777777544 34566778888777664432110 0 0
Q ss_pred -----------------hcC-C--hHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhc--------hH-
Q 001749 286 -----------------KHK-L--VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHV--------FP- 336 (1018)
Q Consensus 286 -----------------~~~-~--~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~--------~~- 336 (1018)
... + -......-+|+|..-.+--.|+...+|..|.+.|-.+-..+|... +.
T Consensus 1314 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~ 1393 (1780)
T PLN03076 1314 DKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFES 1393 (1780)
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 000 0 000111112222111000012334688889888777666666211 11
Q ss_pred HHHHHHHh---hhc--------------------CCChhHHHHHHHHHHHHhhcCh---HHHHHhHHHHHHHHHhhcCCC
Q 001749 337 PVFEFASV---SCQ--------------------NASPKYREAAVTAIGIISEGCA---EWMKEKLESVLHIVLGALRDP 390 (1018)
Q Consensus 337 ~~~~~l~~---~l~--------------------~~~~~~r~aal~~l~~l~~~~~---~~~~~~l~~l~~~l~~~l~d~ 390 (1018)
.++|.+.. ... ...|. ..+...++..+..-.. +.+...++.++..+..++..+
T Consensus 1394 VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~ 1472 (1780)
T PLN03076 1394 VLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRP 1472 (1780)
T ss_pred HHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 23333221 100 01132 4555566666555433 444556778888888888889
Q ss_pred ChhHHHHHHHHHHHhHhhcCHHHH-HhhhhHHHHHHHhccCC
Q 001749 391 EQFVRGAASFALGQFAEYLQPEIV-SHYESVLPCILNALEDE 431 (1018)
Q Consensus 391 ~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~~~ 431 (1018)
|..+-..+..|+.++....+..+. +.+..++..+.+.+...
T Consensus 1473 n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1473 HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHh
Confidence 999988999999999888776664 46677766666555543
No 148
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.085 Score=58.99 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=111.4
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh
Q 001749 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1018)
Q Consensus 340 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1018)
+++.+++.+.++-.|++++++++..-.|... ...+..+++. .+|.|..||.+|..+||-++-.-+
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-------- 587 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-------- 587 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------
Confidence 4566778899999999999877654444322 1233333333 579999999999999998765432
Q ss_pred hHHHHHHHhccC-CChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchh
Q 001749 419 SVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP 497 (1018)
Q Consensus 419 ~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~ 497 (1018)
..+|..++.|.+ -++.||..++-+|+-.|...|.. .-+..|-.+..++..-||..|+-+++.+.-...+...|
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 334444444443 46889999999999999887643 23344444556777889999999999998888888888
Q ss_pred hHHHHHHHHHHHHhccC
Q 001749 498 YAERVLELLKIFMVLTN 514 (1018)
Q Consensus 498 ~~~~i~~~l~~~l~~~~ 514 (1018)
-+..+-..+.+.+....
T Consensus 662 kv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 662 KVNGFRKQLEKVINDKH 678 (929)
T ss_pred hHHHHHHHHHHHhhhhh
Confidence 88888888877776543
No 149
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.57 E-value=0.076 Score=55.64 Aligned_cols=351 Identities=15% Similarity=0.146 Sum_probs=186.6
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcc--CCHHHH----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 001749 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAK--LSPQLK----QLVKQSLIESITLEHSAPVRRASANVVSIIAK 108 (1018)
Q Consensus 35 ~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~--l~~~~~----~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~ 108 (1018)
..+..+++++.....++.-++..+++--.+...-.. +-.... ...-...+..|. ..++.+.+..+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~-r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLN-RQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHh-cCChHHHHHHHHHHHHHHH
Confidence 456677777765445555566666666555432111 111111 111223455555 4788888889999998876
Q ss_pred ccC---CCCCccchHHHHHHhhcC-CChHHHHHHHHHHHHhhhhhhcccc----ccHHHHHHHHHHhcCCCCCHHHHHHH
Q 001749 109 YAV---PAGEWPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFR----PHFADMQALLLKCLQDETSNRVRIAA 180 (1018)
Q Consensus 109 ~~~---~~~~w~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~d~~~~~vr~~a 180 (1018)
... +.+...-.+..+...+++ .++..+..+..||..+...-.-... .-+..+++.+. +...+.+++...
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~~~~~QlQYqs 220 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---STKCGFQLQYQS 220 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---ccCcchhHHHHH
Confidence 532 112334456677777766 5667788888888888753321111 11222333332 443577888887
Q ss_pred HHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc--chhHhHHHHH----HHHHH
Q 001749 181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP--LLGDSVKSIV----HFSLE 254 (1018)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~li----~~l~~ 254 (1018)
+-|+=.+ .|.+.-.+....-++++.+.+++.... .+.+.+-++.++.++.+..+. ..+.+..+.+ ...++
T Consensus 221 ifciWlL-tFn~~~ae~~~~~~li~~L~~Ivk~~~---KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 221 IFCIWLL-TFNPHAAEKLKRFDLIQDLSDIVKEST---KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHHHh-hcCHHHHHHHhhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHH
Confidence 7665333 222211112233467777777765553 356777788888888876642 1122222221 22334
Q ss_pred HhcCCCCChHHHHHHHHHHHHHHHHhHHHhhh-cCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchh
Q 001749 255 VSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK-HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH 333 (1018)
Q Consensus 255 ~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (1018)
.+.....+++--...++++..-.+.+...+.. ..|...+... .| +|+|..........=+..+.+.
T Consensus 297 ~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG---~L----------~WSP~Hk~e~FW~eNa~rlnen 363 (442)
T KOG2759|consen 297 SLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSG---RL----------EWSPVHKSEKFWRENADRLNEN 363 (442)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhC---Cc----------CCCccccccchHHHhHHHHhhc
Confidence 44444455555566777776555433322111 0111111111 11 2333332222222212222211
Q ss_pred chHHHHHHHHhhhc-CCChhHHHHHHHHHHHHhhcChHHHHHhHHHH--HHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001749 334 VFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESV--LHIVLGALRDPEQFVRGAASFALGQFAEY 408 (1018)
Q Consensus 334 ~~~~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l--~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 408 (1018)
-. .++..+...++ +.++..-..|+.-+|...+..++.- ..+.+. =..+++.+++++|.||..|+.|+..+..+
T Consensus 364 ny-ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk-~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 364 NY-ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK-AVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred cH-HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh-HHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 11 23333444444 4457778888999999888766432 112221 24688899999999999999999987643
No 150
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.29 Score=56.93 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhccCCCccchhhhhHhHHHHHhh---cCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCc
Q 001749 792 AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARD---MGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGE 868 (1018)
Q Consensus 792 ~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~ 868 (1018)
.+|+.....+|.+..- ..|..|+.++...+.. ....+.|.+++.+|.++..+.++++-+-+.|+.++-.+..++|+
T Consensus 802 ~kIl~r~~~~LS~e~l-~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESL-RIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHhcchhH-HHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 3444555556665543 4577888888754433 34457788999999999999999999999999999999999998
Q ss_pred ch-hhHHHHHHHhhhhccC
Q 001749 869 SA-LKYYGDILRGLYPLFG 886 (1018)
Q Consensus 869 ~~-~~~~~~il~~L~~~l~ 886 (1018)
-+ +-+...+++.+.+.+.
T Consensus 881 Fv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 54 4456667777665554
No 151
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.29 Score=55.45 Aligned_cols=212 Identities=13% Similarity=0.166 Sum_probs=134.4
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHcccC--
Q 001749 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAV-- 111 (1018)
Q Consensus 35 ~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~-- 111 (1018)
+.++.|+.-..+++-.+-|+-|+..||-.-+++- .+.-.+=.+.+++.|..+ .++.+.+.+-..+..+.+++.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR----~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYR----EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH----HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 4577888888777778888888888876644321 111122223444444443 244444444444444444321
Q ss_pred -----CC-----CCc--------cchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcccccc---HHHHHHHHHHhcCC
Q 001749 112 -----PA-----GEW--------PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH---FADMQALLLKCLQD 170 (1018)
Q Consensus 112 -----~~-----~~w--------~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~---~~~l~~~l~~~l~d 170 (1018)
+. +.| ++.+..+.+.+..-|-.+|..++..+..+....|..+... .|.-+..+...|.|
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 00 122 5567777777777777899999999999998877654432 34456677788888
Q ss_pred CCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC---ccch--hHhH
Q 001749 171 ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP---APLL--GDSV 245 (1018)
Q Consensus 171 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~--~~~~ 245 (1018)
....+|..++-.+..+..-.+.-.....|.+.+..++.++..-=..+..=+...|+..|..+...+ ..+| ..++
T Consensus 178 -srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 178 -SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred -hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 888899999999999988776544566677777777776543211112235678888888888654 3344 3466
Q ss_pred HHHHHH
Q 001749 246 KSIVHF 251 (1018)
Q Consensus 246 ~~li~~ 251 (1018)
|.+..+
T Consensus 257 ~rL~kl 262 (970)
T KOG0946|consen 257 PRLLKL 262 (970)
T ss_pred HHHHhh
Confidence 666543
No 152
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.49 E-value=0.0047 Score=72.18 Aligned_cols=187 Identities=13% Similarity=0.184 Sum_probs=150.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHh
Q 001749 310 DDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (1018)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~ 385 (1018)
+.+|.-|..|.+.+....+.-+ ......+...+.-...|.+..+-.-++..+..++.+....+.++...+++.++.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLD 343 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHH
Confidence 4568888887777665554333 233344555555567888888889999999999999998899999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcccc--ccchHHHHH
Q 001749 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI--LPFLDPLMG 463 (1018)
Q Consensus 386 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~--~~~~~~l~~ 463 (1018)
.+.+..+.+|.++..++..++... .+..+.+.++..+.+.++.++..+...+...++..+... ..-...+++
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p 417 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVP 417 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhH
Confidence 999999999999999999988733 356788899999999999999999999999999886432 345668999
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc-chhhHHHH
Q 001749 464 KLLAALENSPRNLQETCMSAIGSVAAAAEQA-FIPYAERV 502 (1018)
Q Consensus 464 ~l~~~l~~~~~~vr~~al~al~~l~~~~~~~-~~~~~~~i 502 (1018)
.+....++.+..||..+..+++.+....|+. +..|+..+
T Consensus 418 ~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 418 HLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred HHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 9999999999999999999999999998864 34444433
No 153
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.91 Score=60.61 Aligned_cols=418 Identities=16% Similarity=0.152 Sum_probs=222.5
Q ss_pred cccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 001749 152 TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIF 230 (1018)
Q Consensus 152 ~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~a~~~l 230 (1018)
.+.+|++-++..+..+++. +++++..+++.+.-.+.+.........+....+.+++.+...+... +......|+++|
T Consensus 714 ~Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rIL 791 (3550)
T KOG0889|consen 714 SLLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRIL 791 (3550)
T ss_pred HhhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 3567888888777778864 6788999999999888887544434446667777777776666542 567788999999
Q ss_pred HHHhcCCccchh-----------------------------HhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH--
Q 001749 231 DELIESPAPLLG-----------------------------DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY-- 279 (1018)
Q Consensus 231 ~~l~~~~~~~~~-----------------------------~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~-- 279 (1018)
+++.+.+..+++ -.+..++........+...+...|.++...+......
T Consensus 792 GKlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~ 871 (3550)
T KOG0889|consen 792 GKLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMV 871 (3550)
T ss_pred HhhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHH
Confidence 999765322211 1123455555555555555667777776544322110
Q ss_pred -hHHHhhh--------------------------------cCChHH-HHH-HHhhh--------hc--------------
Q 001749 280 -KYNSLKK--------------------------------HKLVIP-ILQ-VMCPL--------LA-------------- 302 (1018)
Q Consensus 280 -~~~~~~~--------------------------------~~~~~~-i~~-~l~~~--------l~-------------- 302 (1018)
.+..+.. ..+... ++. .+... +.
T Consensus 872 ~~~~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~il~~f 951 (3550)
T KOG0889|consen 872 NLSADFKSSIRQLLTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEAILRHF 951 (3550)
T ss_pred hhhccchhhHHHHHHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHH
Confidence 0000000 000000 000 00000 00
Q ss_pred ---------------cCCC-CC--------------------CCCCCcHHHHHHHHHHHHH----HHcc-------hhch
Q 001749 303 ---------------ESNE-AG--------------------EDDDLAPDRAAAEVIDTMA----LNLA-------KHVF 335 (1018)
Q Consensus 303 ---------------~~~~-d~--------------------~d~~~~~~~~a~~~l~~l~----~~~~-------~~~~ 335 (1018)
.... +. ..++...+..+..++..+- ..+| ..++
T Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~ 1031 (3550)
T KOG0889|consen 952 ALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMF 1031 (3550)
T ss_pred HHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchH
Confidence 0000 00 0112233444445554432 2233 2344
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChH-HHHHhHHHHHHHHHhhcCCCChhHH----HHHHHHHHHhHhhcC
Q 001749 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAE-WMKEKLESVLHIVLGALRDPEQFVR----GAASFALGQFAEYLQ 410 (1018)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~l~~~l~~~l~d~~~~Vr----~~a~~~l~~l~~~~~ 410 (1018)
..+++.+.....++.|..|.+++.+++.+.+..+. .+..+...++..++-.+.|....+- ..+-.++-.+...+.
T Consensus 1032 ~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~ 1111 (3550)
T KOG0889|consen 1032 EYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIF 1111 (3550)
T ss_pred HHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHH
Confidence 55566666667789999999999999998887662 2223344555555555544322211 123333333333221
Q ss_pred HHH------HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHH-HH----hhcCCCHhHHHH
Q 001749 411 PEI------VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL-LA----ALENSPRNLQET 479 (1018)
Q Consensus 411 ~~~------~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l-~~----~l~~~~~~vr~~ 479 (1018)
.+. ......++..+...+.+++..||+.+...|..+.+..+..+...+.+.-+.+ .. .+.......+..
T Consensus 1112 ~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig 1191 (3550)
T KOG0889|consen 1112 IDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIG 1191 (3550)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhh
Confidence 111 1345678888889999999999999999999999988655433333332222 11 122224455555
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHH------HHHHHHh--------cc----CchhhhhHHHHHHHHHHHHHhhh--hhh
Q 001749 480 CMSAIGSVAAAAEQAFIPYAERVLE------LLKIFMV--------LT----NDEDLRSRARATELLGLVAESVG--RAR 539 (1018)
Q Consensus 480 al~al~~l~~~~~~~~~~~~~~i~~------~l~~~l~--------~~----~~~~~~~r~~a~~~l~~l~~~~g--~~~ 539 (1018)
.+.++.....-.+.-| .|.+.+.- .+..... .. ...-..+|..++++++....... -..
T Consensus 1192 ~vd~~~fC~~l~p~~f-~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~ 1270 (3550)
T KOG0889|consen 1192 HLDAITFCLSLGPCLF-DFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQ 1270 (3550)
T ss_pred hHHHHHHHHHcCCccc-CchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchh
Confidence 5655555544444322 22222111 1111100 00 00112256667776666554331 122
Q ss_pred cCCChHHHHHHHHhccCCCChhHHHHHHHHHHH
Q 001749 540 MEPILPPFVEAAISGFGLEFSELREYTHGFFSN 572 (1018)
Q Consensus 540 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~ 572 (1018)
..+|-+.++..+++.+..+.+++.+.+..++..
T Consensus 1271 ~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~ 1303 (3550)
T KOG0889|consen 1271 HAELREKIIAVFFKSLYKRSSELIEVALEGLRK 1303 (3550)
T ss_pred hhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 456778888888888887777776665554433
No 154
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.47 E-value=0.042 Score=59.74 Aligned_cols=262 Identities=23% Similarity=0.266 Sum_probs=159.7
Q ss_pred cchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhh
Q 001749 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1018)
Q Consensus 117 ~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1018)
+...+.+.+.+.++++..|..+...++.+- ....++.+...+.+ .++.||..|..+++.+-.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d-~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSD-EDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcC-CCHHHHHHHHHHHHccCC-------
Confidence 456788888888888889998888765542 34567888899998 889999999987655432
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 001749 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (1018)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~ 276 (1018)
...+|.++..+.. +++..++..+...|..+..... +..+++ ...+.. ... +....
T Consensus 104 ----~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a------~~~l~~----~l~~~~--~~~---a~~~~--- 158 (335)
T COG1413 104 ----PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA------LDPLLE----ALQDED--SGS---AAAAL--- 158 (335)
T ss_pred ----hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh------hHHHHH----Hhccch--hhh---hhhhc---
Confidence 1245566665322 6788889999888887765321 222222 222221 111 10000
Q ss_pred HHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHH
Q 001749 277 AKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREA 356 (1018)
Q Consensus 277 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~a 356 (1018)
+...+.+|..+...+..+. .+...+.+.+.+.+.+..+|.+
T Consensus 159 --------------------------------~~~~~~~r~~a~~~l~~~~-------~~~~~~~l~~~l~~~~~~vr~~ 199 (335)
T COG1413 159 --------------------------------DAALLDVRAAAAEALGELG-------DPEAIPLLIELLEDEDADVRRA 199 (335)
T ss_pred --------------------------------cchHHHHHHHHHHHHHHcC-------ChhhhHHHHHHHhCchHHHHHH
Confidence 0001123333333333322 2233344556677888889999
Q ss_pred HHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHH
Q 001749 357 AVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVK 436 (1018)
Q Consensus 357 al~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~ 436 (1018)
+..+++.+.... ..+.+.+...+.|++..||..++.++|.+... ...+.+...+.+.+..++
T Consensus 200 Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~ 261 (335)
T COG1413 200 AASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGDE----------EAVDALAKALEDEDVILA 261 (335)
T ss_pred HHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhccchHHH
Confidence 999998887653 35567788888999999999999888876533 445566666677666666
Q ss_pred HHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001749 437 EKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1018)
Q Consensus 437 ~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~ 488 (1018)
..+..+++ .. ....-...+...+.+....++..+..+++...
T Consensus 262 ~~~~~~~~------~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 262 LLAAAALG------AL----DLAEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred HHHHHHhc------cc----CchhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 55554444 00 11222333444555566667776666665543
No 155
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.43 Score=55.61 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=75.1
Q ss_pred HHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccc-----cccchHHHHHHHHHhhcC
Q 001749 397 AASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-----ILPFLDPLMGKLLAALEN 471 (1018)
Q Consensus 397 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-----~~~~~~~l~~~l~~~l~~ 471 (1018)
.+...+|.++...+..+.+.+-..+-.++..+.+++..+...|..++..++..++-. +..-.+-++..+...++.
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~ 646 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNT 646 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhcc
Confidence 446678888888888777766556666667777888888888899999999887432 223344455555555553
Q ss_pred CCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhc
Q 001749 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (1018)
Q Consensus 472 ~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 512 (1018)
.. +..++-..+..+....+.+..|+++.++..+...+..
T Consensus 647 ~~--~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~ 685 (1014)
T KOG4524|consen 647 SG--MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDY 685 (1014)
T ss_pred CC--CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Confidence 21 2223344455556666677788888888777766654
No 156
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.41 E-value=0.13 Score=55.54 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=136.4
Q ss_pred HHHHHHHhcC-CccchhHhHHHHHHHHHHHhcCC-------CC-C----hHHHHHHHHHHHHHHHHhHHHhhhcCChHHH
Q 001749 227 FEIFDELIES-PAPLLGDSVKSIVHFSLEVSSSH-------NL-E----PNTRHQAIQIISWLAKYKYNSLKKHKLVIPI 293 (1018)
Q Consensus 227 ~~~l~~l~~~-~~~~~~~~~~~li~~l~~~~~~~-------~~-~----~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i 293 (1018)
++++..+... -|++|..++...+..+..++.-+ +. + +.++..+++.+...++.....+.. +++..
T Consensus 61 lKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~--~l~~f 138 (370)
T PF08506_consen 61 LKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEP--FLPTF 138 (370)
T ss_dssp HHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHH
T ss_pred HHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3444444332 37788888887777665443221 11 1 135555666666666655555543 77777
Q ss_pred HHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-h------hchHHH-----HHHH------------------H
Q 001749 294 LQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-K------HVFPPV-----FEFA------------------S 343 (1018)
Q Consensus 294 ~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-~------~~~~~~-----~~~l------------------~ 343 (1018)
+..+..+|......... | .....+...|..+++... . ..+..+ +|.+ .
T Consensus 139 v~~vw~lL~~~~~~~~~-D-~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIr 216 (370)
T PF08506_consen 139 VQAVWNLLTKISQQPKY-D-ILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIR 216 (370)
T ss_dssp HHHHHHHHTC--SSGGG-H-HHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhhhcccc-c-HHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHH
Confidence 77777777665432111 1 222334444544432211 1 122222 2221 1
Q ss_pred hhhc-CCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhh---cCCCChhHHHHHHHHHHHhHhhcCH--------
Q 001749 344 VSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA---LRDPEQFVRGAASFALGQFAEYLQP-------- 411 (1018)
Q Consensus 344 ~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~---l~d~~~~Vr~~a~~~l~~l~~~~~~-------- 411 (1018)
.-+. +.....|.||+..+..+++...+...+.+...+..++.. -...+++-+.+|+..++.++.....
T Consensus 217 rd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~ 296 (370)
T PF08506_consen 217 RDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQT 296 (370)
T ss_dssp HHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B
T ss_pred hhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccc
Confidence 1111 122355778888888888765554444443333333321 1245789999999999999876521
Q ss_pred ----HHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHH
Q 001749 412 ----EIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAI 484 (1018)
Q Consensus 412 ----~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al 484 (1018)
.+.+++ ..++|.|. .=.+..|-++..|++.+..|-...++ +.+..+++.+...|.+++.-|+..|..||
T Consensus 297 ~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 297 NELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 123333 45566665 22234566899999999998887754 35778999999999999988888887664
No 157
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.40 E-value=0.00025 Score=45.04 Aligned_cols=31 Identities=45% Similarity=0.520 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhhc
Q 001749 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYL 409 (1018)
Q Consensus 379 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 409 (1018)
++|.+++.++|+++.||.+|+++++.+++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999998753
No 158
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.39 E-value=0.18 Score=56.46 Aligned_cols=310 Identities=13% Similarity=0.157 Sum_probs=146.5
Q ss_pred HHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCC
Q 001749 37 VPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE 115 (1018)
Q Consensus 37 ~~~l~~~l~~-~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~ 115 (1018)
......+|.. ..+...+++|+.++-+.+ ..++ +..+.-.+.++.... |.+..||..+.+.|..+++.. + ..
T Consensus 22 ~~~y~~il~~~kg~~k~K~Laaq~I~kff----k~FP-~l~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~-~-~~ 93 (556)
T PF05918_consen 22 EEDYKEILDGVKGSPKEKRLAAQFIPKFF----KHFP-DLQEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKDN-P-EH 93 (556)
T ss_dssp HHHHHHHHHGGGS-HHHHHHHHHHHHHHH----CC-G-GGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T----T-
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHH----hhCh-hhHHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHhH-H-HH
Confidence 3344444443 347899999998887664 3333 244555556666665 688999999999998888754 2 24
Q ss_pred ccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHhhcccCC
Q 001749 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQ--DETSNRVRIAALKAIGSFLEFTND 193 (1018)
Q Consensus 116 w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~--d~~~~~vr~~a~~~l~~~~~~~~~ 193 (1018)
.+.+...|.++++++++......=..|..+....+. ..+-.++.+... . .+..+|..+++.+..-+...+.
T Consensus 94 v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k------~tL~~lf~~i~~~~~-~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 94 VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK------GTLTGLFSQIESSKS-GDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHH---H-S-HHHHHHHHHHHHHHGGGS-T
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccc-CchHHHHHHHHHHHHHHhhCcH
Confidence 488899999999998887777777777777654432 122233333331 2 4677999999988665544332
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhc-CCCCChHHHHHHHHH
Q 001749 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS-SHNLEPNTRHQAIQI 272 (1018)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~-~~~~~~~~r~~a~~~ 272 (1018)
.... .-.+.-..++..+...+.+-..+.....+.+|..+--....--......+++++.+.+. +...+.. -...++-
T Consensus 167 ~~~~-p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~s-D~e~Idr 244 (556)
T PF05918_consen 167 ELLT-PQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPS-DPESIDR 244 (556)
T ss_dssp TTS----HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SS-SHHHHHH
T ss_pred HHhh-chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCc-CHHHHHH
Confidence 1101 00112233445555566543334444444444433221000112233456666554432 1111100 1223443
Q ss_pred HHHHHHHhHHHhhhc----CChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc----hhchHHHHHHHHh
Q 001749 273 ISWLAKYKYNSLKKH----KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASV 344 (1018)
Q Consensus 273 l~~~~~~~~~~~~~~----~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~ 344 (1018)
+..|+...-..+.+. .++.-+...++|.+.+..+ ..+-.-...+..++...+ ...++.+++.+..
T Consensus 245 li~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e-------~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 245 LISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPE-------DRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKK 317 (556)
T ss_dssp HHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT------------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCCh-------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 334443322222221 2444444455555544321 122223344444444444 3455666666655
Q ss_pred hhcC------CChhHHHHHHHHHHHHhhcChH
Q 001749 345 SCQN------ASPKYREAAVTAIGIISEGCAE 370 (1018)
Q Consensus 345 ~l~~------~~~~~r~aal~~l~~l~~~~~~ 370 (1018)
++-. -++..-++.++++..++...++
T Consensus 318 ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 318 YMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp TS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred hCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 5422 2345556666777776665543
No 159
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.35 E-value=0.0069 Score=57.18 Aligned_cols=135 Identities=20% Similarity=0.243 Sum_probs=108.6
Q ss_pred hchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcC-hHHHHHhHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhcC
Q 001749 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AEWMKEKLESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
..+..+...+...+++.++..|..++..++.+++.+ .+.+..+-...+..++..++.+ .+.+...++.+++.+.....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 355667777888899999999999999999999988 6777677778888888888754 56789999999999987663
Q ss_pred H--H-----HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhh
Q 001749 411 P--E-----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (1018)
Q Consensus 411 ~--~-----~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 469 (1018)
. + ..+.++.+++.+++.+++ ..+...++.++..++...+..+.||...+-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 2 235678888888887776 4677889999999999999999999988877776654
No 160
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.21 Score=50.15 Aligned_cols=365 Identities=19% Similarity=0.275 Sum_probs=181.0
Q ss_pred ChHHHHH---HHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhh-HHH
Q 001749 131 QEEHREV---ALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREF-IPS 206 (1018)
Q Consensus 131 ~~~~r~~---al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~ 206 (1018)
+.++|+. ...++..+...... ....+++.+-+..+|.. ++..|+..+++.++.+++....+. +...... -..
T Consensus 53 NenhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLia-ddasVKiLackqigcilEdcDtna-VseillvvNae 128 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIA-DDASVKILACKQIGCILEDCDTNA-VSEILLVVNAE 128 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccC-CcchhhhhhHhhhhHHHhcCchhh-HHHHHHHhhhh
Confidence 3455655 55666666543221 23456788889999988 888999999999999998875332 2221111 112
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHhHHHhh
Q 001749 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL-EPNTRHQAIQIISWLAKYKYNSLK 285 (1018)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~-~~~~r~~a~~~l~~~~~~~~~~~~ 285 (1018)
++..+..++..+|.++...+.+.+..++-. ..-+..+++ ++-. +-..|..|..+ ..++.
T Consensus 129 ilklildcIggeddeVAkAAiesikrialf-----paaleaiFe-------SellDdlhlrnlaakc-ndiaR------- 188 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALF-----PAALEAIFE-------SELLDDLHLRNLAAKC-NDIAR------- 188 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----HHHHHHhcc-------cccCChHHHhHHHhhh-hhHHH-------
Confidence 333444467778899999999999887742 222222221 1111 22233333221 01111
Q ss_pred hcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcC-CChhHHHHHHHHHHHH
Q 001749 286 KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN-ASPKYREAAVTAIGII 364 (1018)
Q Consensus 286 ~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l 364 (1018)
-.++.+++.+.+-.- ..+..| . -.-++..+..-++. .+.-+|...+.....+
T Consensus 189 -----vRVleLIieifSiSp-----------esanec--------k---kSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 189 -----VRVLELIIEIFSISP-----------ESANEC--------K---KSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred -----HHHHHHHHHHHhcCH-----------HHHhHh--------h---hhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 123333333332110 000000 0 01122222222333 4555555556555555
Q ss_pred hhcCh-HHHHHhHHHHHHHHHhhcC--CCChhHHHHHHHHHHHhHhhc------CHHHHHhhhhHHHHHHHhccCCChHH
Q 001749 365 SEGCA-EWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYL------QPEIVSHYESVLPCILNALEDESDEV 435 (1018)
Q Consensus 365 ~~~~~-~~~~~~l~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~------~~~~~~~~~~~l~~l~~~l~~~~~~v 435 (1018)
++.-. ..+-++ ..++..+.+.+. |.+|.-...++...+++.... +..+.+.+...+...++.+...++..
T Consensus 242 aeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 242 AETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 55321 111111 123333333332 555655555555555554322 11223345555666677777777889
Q ss_pred HHHHHHHHHHHHhhh-cccc-c----cchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 001749 436 KEKSYYALAAFCEDM-GEEI-L----PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIF 509 (1018)
Q Consensus 436 ~~~a~~al~~l~~~~-~~~~-~----~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~ 509 (1018)
+..|..+++.+-.+. |..+ . |-+..++ ...+..+...-++.++.|++.++....-. | ++
T Consensus 321 ieaAiDalGilGSnteGadlllkTgppaaehll---arafdqnahakqeaaihaLaaIagelrlk--p--eq-------- 385 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTEGADLLLKTGPPAAEHLL---ARAFDQNAHAKQEAAIHALAAIAGELRLK--P--EQ-------- 385 (524)
T ss_pred HHHHHHHHHhccCCcchhHHHhccCChHHHHHH---HHHhcccccchHHHHHHHHHHhhccccCC--h--hh--------
Confidence 999999999887766 3332 2 2333332 23344444445666777776665432110 0 00
Q ss_pred HhccCc-hhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q 001749 510 MVLTND-EDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (1018)
Q Consensus 510 l~~~~~-~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (1018)
..+. .+.++|...++.. ++.. ++.| ....+..++++.++++-..+..|..++.
T Consensus 386 --itDgkaeerlrclifdaa---aqst---kldP-----leLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 386 --ITDGKAEERLRCLIFDAA---AQST---KLDP-----LELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred --ccccHHHHHHHHHHHHHH---hhcc---CCCh-----HHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 0111 1123333223222 2111 1222 2233445677889999999999988875
No 161
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.88 Score=57.09 Aligned_cols=193 Identities=13% Similarity=0.175 Sum_probs=117.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCC--C
Q 001749 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA--G 114 (1018)
Q Consensus 37 ~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~--~ 114 (1018)
...|...+.+...+.+|++.++.+.+.+.. |..+....+-.-.+..+..- +.+++.-...+..+++......++. .
T Consensus 53 ~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~-~~~~~q~k~~a~~~l~~~y~~~g~~~~~ 130 (2067)
T KOG1822|consen 53 EQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDFLSDG-SPSDPQRKLAALSCLGSLYEHYGRMIGR 130 (2067)
T ss_pred HHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcC-CCccHHHHHhhccchHHHHHHhhHhhcc
Confidence 455677777777899999999999999877 87776544333222222200 1123444445566677666544331 2
Q ss_pred CccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcc--ccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccC
Q 001749 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT--FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (1018)
Q Consensus 115 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~ 192 (1018)
...+.+..+..+.+....-.|...+.++...+...+.. ...+...+.......+.+ .+..||.++.+|+..+.....
T Consensus 131 ~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld-~s~~v~iaa~rc~~a~s~~~~ 209 (2067)
T KOG1822|consen 131 GLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLD-RSFNVKIAAARCLKAFSNLGG 209 (2067)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhh-hhHHHHHHhHHHHHHHHhhcC
Confidence 46778888888888776666777777777777665522 223344555666666777 777799999999988876553
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 001749 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (1018)
Q Consensus 193 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 236 (1018)
....... ........+..+...+.+.+....+++..++..
T Consensus 210 ~~~~~Se----le~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 210 PGLGTSE----LETLASYCFKGIEISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred ccccchh----hhhhcceeeeeeccchHHHHHHHHHHHHHHHhc
Confidence 2211111 122222333334445667777777777776643
No 162
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.31 E-value=0.0024 Score=60.23 Aligned_cols=139 Identities=21% Similarity=0.246 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhc-ChHHHHHhHHHHHHH------------HHhhcCCCChhHHHHHHHHHHHhHhhcCHHHH-----
Q 001749 353 YREAAVTAIGIISEG-CAEWMKEKLESVLHI------------VLGALRDPEQFVRGAASFALGQFAEYLQPEIV----- 414 (1018)
Q Consensus 353 ~r~aal~~l~~l~~~-~~~~~~~~l~~l~~~------------l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----- 414 (1018)
.|.+|+.+++.++.. .+..+..|...++|. +...+.|++++||.+|+.++..+.+..++.+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777666 334444444444432 23345799999999999999998876533211
Q ss_pred -----------H----hhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhhc-cccc-cchHHHHHHHHHhhcCCCHhH
Q 001749 415 -----------S----HYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMG-EEIL-PFLDPLMGKLLAALENSPRNL 476 (1018)
Q Consensus 415 -----------~----~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~-~~~~-~~~~~l~~~l~~~l~~~~~~v 476 (1018)
. .+.++=..|+..++.+ +..+....++++..++.+.+ ..+. .++..++..+...+.+.+..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 1122233344445443 45677889999999999885 3344 577888999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 001749 477 QETCMSAIGSVAAAA 491 (1018)
Q Consensus 477 r~~al~al~~l~~~~ 491 (1018)
+..++.++|.+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999987654
No 163
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.39 Score=58.83 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHcc-hhchHHHHHHHHh-hhcCCChhHHHHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHhhcCCCC
Q 001749 315 PDRAAAEVIDTMALNLA-KHVFPPVFEFASV-SCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPE 391 (1018)
Q Consensus 315 ~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~-~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~ 391 (1018)
....+..+.+..+.... ....+.++..+.. ...+..|++|.+.+..+....-... -......+++...+.+.+.|..
T Consensus 1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~ 1582 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ 1582 (1710)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH
Confidence 34556666666655444 5566777777763 3456789999998877766554321 1233456688888899999999
Q ss_pred hhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCC-hHHH-HHHHHHHHHHHhhhccccccchHHHHHHHHHhh
Q 001749 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES-DEVK-EKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (1018)
Q Consensus 392 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~v~-~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 469 (1018)
..||..|..+++-+...-.-.... .......+...... +.++ ..|.-+++.++-.++-.+..+++..+..+....
T Consensus 1583 i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred HHHHHHHHHHHHHHHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhc
Confidence 999999999999886543211111 11122222222222 3344 457889999999988777667777666665554
Q ss_pred cCCCHhHHHHHHHHHHHHHHHhhc
Q 001749 470 ENSPRNLQETCMSAIGSVAAAAEQ 493 (1018)
Q Consensus 470 ~~~~~~vr~~al~al~~l~~~~~~ 493 (1018)
.+ +..++..+-.+++..-....+
T Consensus 1660 ~e-~~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1660 RE-SAAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred CC-chHHHHHHHHHHHHHHHHhhh
Confidence 44 356677776666665555444
No 164
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0033 Score=62.59 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=113.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHcchh---chHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhh
Q 001749 310 DDDLAPDRAAAEVIDTMALNLAKH---VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA 386 (1018)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~ 386 (1018)
+++|...-.+...+..++..-++. .+..++-.+.+.+++....+-.+|+.+++.+.....+.+...++.++..++..
T Consensus 99 s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~k 178 (334)
T KOG2933|consen 99 SDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHK 178 (334)
T ss_pred hHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777777888888887655533 33334445556678888889999999999999987777777777788777777
Q ss_pred cCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc--cccccchHHHHHH
Q 001749 387 LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--EEILPFLDPLMGK 464 (1018)
Q Consensus 387 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~--~~~~~~~~~l~~~ 464 (1018)
-.+.+..||..|-.+|..+..+..|. .+++.|...++..+++++..++.++.......+ ....+|.....+.
T Consensus 179 a~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a 252 (334)
T KOG2933|consen 179 ASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRA 252 (334)
T ss_pred hcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHH
Confidence 77889999999999999999887663 567777777888889999999888887776664 1122333344444
Q ss_pred HHHhhcC
Q 001749 465 LLAALEN 471 (1018)
Q Consensus 465 l~~~l~~ 471 (1018)
+.+-..+
T Consensus 253 ~~~~~~d 259 (334)
T KOG2933|consen 253 AQEQGSD 259 (334)
T ss_pred HHhhhcc
Confidence 4443333
No 165
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.22 E-value=0.00055 Score=43.44 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=27.1
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 001749 836 VMPLVLKELASPDAMNRRNAAFCVGELCKN 865 (1018)
Q Consensus 836 l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~ 865 (1018)
++|.+++.++|++++||.+|++++|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999875
No 166
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.15 E-value=0.24 Score=54.27 Aligned_cols=148 Identities=16% Similarity=0.076 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHH
Q 001749 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (1018)
Q Consensus 79 i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 158 (1018)
....|+..|..+.+..++..++..+. ... -+..+..+...+.+.++.+|..+...|+.+- .+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-----~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~ 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQE-----DALDLRSVLAVLQAGPEGLCAGIQAALGWLG----------GR 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-----ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------ch
Confidence 45566677754556666554332221 111 1223777888888877778888888887652 23
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc
Q 001749 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (1018)
Q Consensus 159 ~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 238 (1018)
...+.+...+.+ .++.||.+++.+++..- .+ -.+.+.. .+++.++.++..+++++..+-..
T Consensus 117 ~a~~~L~~~L~~-~~p~vR~aal~al~~r~---~~---------~~~~L~~----~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 117 QAEPWLEPLLAA-SEPPGRAIGLAALGAHR---HD---------PGPALEA----ALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred HHHHHHHHHhcC-CChHHHHHHHHHHHhhc---cC---------hHHHHHH----HhcCCCHHHHHHHHHHHHhhccc--
Confidence 445566677777 78888888776665511 11 1222333 35677888888888888776532
Q ss_pred cchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 001749 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQII 273 (1018)
Q Consensus 239 ~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l 273 (1018)
...+.+.. ... +.++.+|..|+..+
T Consensus 178 ----~a~~~L~~----al~--d~~~~VR~aA~~al 202 (410)
T TIGR02270 178 ----LSESTLRL----YLR--DSDPEVRFAALEAG 202 (410)
T ss_pred ----cchHHHHH----HHc--CCCHHHHHHHHHHH
Confidence 11222221 122 35677777776655
No 167
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.14 E-value=0.65 Score=51.78 Aligned_cols=464 Identities=13% Similarity=0.075 Sum_probs=230.9
Q ss_pred ChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHcccCC-CCCc--cchHHHHH
Q 001749 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAVP-AGEW--PDLLPFLF 124 (1018)
Q Consensus 49 ~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~~-~~~w--~~ll~~l~ 124 (1018)
+|+.---|..-+++.+..+-+......+..-.+.++..+..+ ....+.+..+.+++..+..+.. .+.. ...++.++
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll 101 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLL 101 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHH
Confidence 444433445555555544333222222222223344444332 3445556777788776653321 0111 33578899
Q ss_pred HhhcCCC-hHHHHHHHHHHHHhhhhhh---ccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHH
Q 001749 125 QFSQSEQ-EEHREVALILFSSLTETIG---QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKF 200 (1018)
Q Consensus 125 ~~~~s~~-~~~r~~al~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 200 (1018)
+++.+.+ ...++..+.++..+.+..+ .....+..++++.+...++.+.....+.-+..+ .......++. ...+
T Consensus 102 ~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~--a~~s~~~~hq-~Il~ 178 (678)
T KOG1293|consen 102 QLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRA--AHLSSTKDHQ-LILC 178 (678)
T ss_pred HHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh--ccccccchhh-heec
Confidence 9998888 7899999999999998764 223345566776666655521122222211111 1111111110 1112
Q ss_pred HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHH---HHhcCCccchhHhHHH-----HHH--HHHHHhcCCCCChHHHHHHH
Q 001749 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFD---ELIESPAPLLGDSVKS-----IVH--FSLEVSSSHNLEPNTRHQAI 270 (1018)
Q Consensus 201 ~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~---~l~~~~~~~~~~~~~~-----li~--~l~~~~~~~~~~~~~r~~a~ 270 (1018)
..-++.-+..+... -....+.+|+.++. .++-..+..--..+.. +.+ ...++..++ +.+.|..++
T Consensus 179 Na~i~ekI~~l~~~---~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~--~~s~~l~sl 253 (678)
T KOG1293|consen 179 NAGILEKINILLMY---LSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP--DFSERLRSL 253 (678)
T ss_pred cccchhhHHHHHHh---hhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC--CccHHHHHH
Confidence 22333333332222 23456677777777 4443332211111111 111 122333444 444566666
Q ss_pred HHHHHHHHHhHHH---hhhc---CCh-HHH-HHHHhhhhccCCCCCCCCCCcH--HHHHHHHHHH-HHHHcc-----hhc
Q 001749 271 QIISWLAKYKYNS---LKKH---KLV-IPI-LQVMCPLLAESNEAGEDDDLAP--DRAAAEVIDT-MALNLA-----KHV 334 (1018)
Q Consensus 271 ~~l~~~~~~~~~~---~~~~---~~~-~~i-~~~l~~~l~~~~~d~~d~~~~~--~~~a~~~l~~-l~~~~~-----~~~ 334 (1018)
+.+..+....... ++.. +.. ..+ ...+...+..+- |+. ..+...|+.. +++.+. ...
T Consensus 254 ~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~-------~s~l~~~~~l~c~~a~~~sklq~~~~e~~~ 326 (678)
T KOG1293|consen 254 ECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPG-------LSTLDHTNVLFCILARFASKLQLPQHEEAT 326 (678)
T ss_pred HHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCc-------eeehhhhhhhHHHHHHHHHhhhhHHhhhhh
Confidence 6666555433110 0000 000 011 111111121110 111 1122233322 333332 223
Q ss_pred hHHHHHHHH--hhhcCCChhHHHHHHHHH---HHHhhcChHHHHHhHH--HHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001749 335 FPPVFEFAS--VSCQNASPKYREAAVTAI---GIISEGCAEWMKEKLE--SVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1018)
Q Consensus 335 ~~~~~~~l~--~~l~~~~~~~r~aal~~l---~~l~~~~~~~~~~~l~--~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 407 (1018)
.+.+.+++. .-++....+.|.-++.-. ...+.+.....+.++. .....+.......+..++.+||.++-.++.
T Consensus 327 ~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~sr 406 (678)
T KOG1293|consen 327 LKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSR 406 (678)
T ss_pred hhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence 333333332 234556667776555322 2222222222222222 222333333445677888999999988876
Q ss_pred hcCHHHHH--hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchH-HHHHHHHHhhcCCCHhHHHHHHHHH
Q 001749 408 YLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAI 484 (1018)
Q Consensus 408 ~~~~~~~~--~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~vr~~al~al 484 (1018)
.... ... .-..++..+++.+.+|+..|+..+..++.+++-.+++-=..|+. ..++.+.+.+.+.++++|..+++++
T Consensus 407 sV~a-L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L 485 (678)
T KOG1293|consen 407 SVSA-LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL 485 (678)
T ss_pred HHHH-HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH
Confidence 6532 221 22467777888889999999999999999999887653334444 5788999999999999999999999
Q ss_pred HHHHHHhhccc--hhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHH
Q 001749 485 GSVAAAAEQAF--IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLV 531 (1018)
Q Consensus 485 ~~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l 531 (1018)
-.+.-.+.+.+ .++-.--...+..+. +++++.+.++++..+..+
T Consensus 486 r~l~f~~de~~k~~~~~ki~a~~i~~l~---nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 486 RHLMFNCDEEEKFQLLAKIPANLILDLI---NDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHhcchHHHHHHHHHHhhHHHHHHHH---hCCCHHHHHHHHHHHHHh
Confidence 88876665433 333333333333333 346666666666665554
No 168
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.11 E-value=0.086 Score=58.92 Aligned_cols=275 Identities=15% Similarity=0.160 Sum_probs=136.3
Q ss_pred cCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHH
Q 001749 217 SGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQV 296 (1018)
Q Consensus 217 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~ 296 (1018)
.++......|.+.+..+....|.+-...+. .++.+|.+ .+..||.+|+.-|..++...+ .++..+...
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~----a~~DLcED--ed~~iR~~aik~lp~~ck~~~------~~v~kvaDv 100 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEEAIN----AQLDLCED--EDVQIRKQAIKGLPQLCKDNP------EHVSKVADV 100 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHHHHH----HHHHHHT---SSHHHHHHHHHHGGGG--T--------T-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHH----HHHHHHhc--ccHHHHHHHHHhHHHHHHhHH------HHHhHHHHH
Confidence 356778888888888888776665555444 44455654 478899999998877775433 377888999
Q ss_pred HhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh-HHHH--
Q 001749 297 MCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMK-- 373 (1018)
Q Consensus 297 l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~-- 373 (1018)
+.++|...+ .......-.+|..+-..-+...+..++..+... .+.+...|+-++..+..-..... +.+.
T Consensus 101 L~QlL~tdd-------~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~ 172 (556)
T PF05918_consen 101 LVQLLQTDD-------PVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQ 172 (556)
T ss_dssp HHHHTT----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---
T ss_pred HHHHHhccc-------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhch
Confidence 999998532 233455566676666666666666666655421 23456778887766644333222 2222
Q ss_pred HhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhc--cC----CChHHHHHHHHHHHHH
Q 001749 374 EKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL--ED----ESDEVKEKSYYALAAF 446 (1018)
Q Consensus 374 ~~l-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l--~~----~~~~v~~~a~~al~~l 446 (1018)
... .-++..+.+.|.|-...==...+.+|+.+-.+.+..-.+....+++.+.+.. .. .++..-.+...++..-
T Consensus 173 ~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~A 252 (556)
T PF05918_consen 173 KEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQA 252 (556)
T ss_dssp HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHh
Confidence 112 3345566777777332211222333333332111111223445555555332 21 1222222333333321
Q ss_pred Hhhh--ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHh
Q 001749 447 CEDM--GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ-AFIPYAERVLELLKIFMV 511 (1018)
Q Consensus 447 ~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~-~~~~~~~~i~~~l~~~l~ 511 (1018)
+.-+ +..-.+|+.-++..++..++.-....+-..+.+++.++..++. +....++.++..|..++.
T Consensus 253 lp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 253 LPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp GGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-
T ss_pred hHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCC
Confidence 1111 1122345555555655556555667788889999988887774 334455555555554443
No 169
>PF05536 Neurochondrin: Neurochondrin
Probab=97.10 E-value=0.85 Score=52.35 Aligned_cols=241 Identities=12% Similarity=0.122 Sum_probs=137.1
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHH----HHHHHHHHHHHHHhhc-------CCHHHHHHHHH
Q 001749 33 DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ----LKQLVKQSLIESITLE-------HSAPVRRASAN 101 (1018)
Q Consensus 33 ~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~----~~~~i~~~Ll~~l~~e-------~~~~vr~~~~~ 101 (1018)
++..+..++.++.+.. ..-|..|..++++.+... ..+.. ..+.|-..++..|... +....+..+..
T Consensus 3 ~~~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~--~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD-DTERFAGLLLVTKLLDAD--DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred chHHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 3455677888887544 566666666666665421 11111 1122222344444332 22345555566
Q ss_pred HHHHHHcccC--CCCCccchHHHHHHhhcCCCh-HHHHHHHHHHHHhhhhhhccccccH-HHHHHHHHHhcCCCCCHHHH
Q 001749 102 VVSIIAKYAV--PAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVR 177 (1018)
Q Consensus 102 ~l~~i~~~~~--~~~~w~~ll~~l~~~~~s~~~-~~r~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~~vr 177 (1018)
+++.+.+... .....-+-+|.+.+.+.+.+. ....-++.+|..++.. ++.....+ ...++.+.+.+.+ .+...
T Consensus 80 vL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~ 156 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQM 156 (543)
T ss_pred HHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchH
Confidence 6666665211 012445568999999877665 7788899999999843 22111111 1223344444433 34567
Q ss_pred HHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc------chhHhHHHHHHH
Q 001749 178 IAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP------LLGDSVKSIVHF 251 (1018)
Q Consensus 178 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~------~~~~~~~~li~~ 251 (1018)
..|+..+..++...... ........+..++..+...+.......+...+..|..+....+. .-......+...
T Consensus 157 E~Al~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 78888888876654311 11122233444455554445444455667778888888866531 123456667777
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHhH
Q 001749 252 SLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (1018)
Q Consensus 252 l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~ 281 (1018)
+..++.++ ..+.-|..++.+...+.+..+
T Consensus 236 l~~iL~sr-~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 236 LRDILQSR-LTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHHhC
Confidence 77787775 678889999998888887644
No 170
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.09 E-value=0.025 Score=61.79 Aligned_cols=119 Identities=17% Similarity=0.077 Sum_probs=85.2
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh
Q 001749 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1018)
Q Consensus 339 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1018)
+..+...+.+.+..+|.++..+|+.+.. +...+.+...+.++++.||.+++.+++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~----------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG----------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH----------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------
Confidence 4555566778888889998888886543 3556677778888999999888877776221
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001749 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1018)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~ 488 (1018)
.-.+.+...|+|+++.|+..|+.+++.+-.. ..++.|...+.+.++.||..|+.+++.+.
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 2234566667788889999999988876432 22334556688888999999888887663
No 171
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.08 E-value=0.0057 Score=57.75 Aligned_cols=141 Identities=23% Similarity=0.268 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHcccCCC---CCccchHHHH------------HHhhcCCChHHHHHHHHHHHHhhhhhhcc-------
Q 001749 95 VRRASANVVSIIAKYAVPA---GEWPDLLPFL------------FQFSQSEQEEHREVALILFSSLTETIGQT------- 152 (1018)
Q Consensus 95 vr~~~~~~l~~i~~~~~~~---~~w~~ll~~l------------~~~~~s~~~~~r~~al~~l~~l~~~~~~~------- 152 (1018)
||..+..++..+++...++ +.|+.++|.- .-.+.+++++.|.+|+.++..+.+.....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 7888999999998863333 6888888865 22345678899999999999999775321
Q ss_pred ------ccc-------cHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCC
Q 001749 153 ------FRP-------HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGE 219 (1018)
Q Consensus 153 ------~~~-------~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 219 (1018)
|.+ .+-++...+...+..+.+..+-...++|+..+++..+-. .--.++++.++..+...+.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~---rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH---RLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChh---hcCHhHHHHHHHHHHHHHhcCC
Confidence 222 223445566677777678888889999999999877521 1124688888888888888889
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 001749 220 EDVAVIAFEIFDELIESPA 238 (1018)
Q Consensus 220 ~~~~~~a~~~l~~l~~~~~ 238 (1018)
.+++..++.++..+....+
T Consensus 159 ~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CcHHHHHHHHHHHHHcCCC
Confidence 9999999999998886543
No 172
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.07 E-value=0.018 Score=58.29 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=119.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCcc--chHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhc--ccccc
Q 001749 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWP--DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--TFRPH 156 (1018)
Q Consensus 81 ~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~--~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~--~~~~~ 156 (1018)
+.|+..|....++.++..+..+++..+.+...+..+- ..++.+...+.++++..|+.|+.++..+...... .+..|
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 4566777766789999999999998877554333443 3588999999999999999999999988755432 23344
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 001749 157 FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (1018)
Q Consensus 157 ~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 236 (1018)
++++...+ .++.-+..++.+++++|.++.-.... ...+...+|.++. .+..++...+..++++|..+++.
T Consensus 95 i~~Vc~~~---~s~~lns~~Q~agLrlL~nLtv~~~~---~~~l~~~i~~ll~----LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEET---VSSPLNSEVQLAGLRLLTNLTVTNDY---HHMLANYIPDLLS----LLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHH---hcCCCCCHHHHHHHHHHHccCCCcch---hhhHHhhHHHHHH----HHHcCChHHHHHHHHHHHHhccC
Confidence 45544433 33323567889999999998533211 2223445666554 46778889999999999999875
Q ss_pred CccchhHhH-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 001749 237 PAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (1018)
Q Consensus 237 ~~~~~~~~~-~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~ 278 (1018)
..- .+..+ .+....++.+... +.+.++...++.++..+.+
T Consensus 165 p~~-~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 PDM-TRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINE 205 (254)
T ss_pred HHH-HHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHH
Confidence 321 11111 1122233333333 2345566666666665544
No 173
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.07 E-value=0.025 Score=61.49 Aligned_cols=185 Identities=21% Similarity=0.275 Sum_probs=118.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHh
Q 001749 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (1018)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 416 (1018)
...+.+...+.+++|..|..+...++.+.. ...++.+...+.|.++.||..|..++|.+...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGDP-------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence 345556667888899999999988766543 36788889999999999999999988877532
Q ss_pred hhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCC------------HhHHHHHHHH
Q 001749 417 YESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP------------RNLQETCMSA 483 (1018)
Q Consensus 417 ~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~------------~~vr~~al~a 483 (1018)
..++.+++.+. |++..||..+..+|+.+-.... +..++..+++.. ..+|..+..+
T Consensus 105 --~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 105 --EAVPPLVELLENDENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred --hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 45566666666 6888999999999987643321 233333344322 2566666666
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHH
Q 001749 484 IGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELR 563 (1018)
Q Consensus 484 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~ 563 (1018)
++.+..- ...+.+...+... ...+|..+...++.++... ..+...+...+..++..+|
T Consensus 173 l~~~~~~----------~~~~~l~~~l~~~---~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 173 LGELGDP----------EAIPLLIELLEDE---DADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHcCCh----------hhhHHHHHHHhCc---hHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHH
Confidence 6654322 2233444444332 2246667777666655321 3344455555677778888
Q ss_pred HHHHHHHHHH
Q 001749 564 EYTHGFFSNI 573 (1018)
Q Consensus 564 ~~~~~~l~~l 573 (1018)
..+...++.+
T Consensus 231 ~~~~~~l~~~ 240 (335)
T COG1413 231 KAALLALGEI 240 (335)
T ss_pred HHHHHHhccc
Confidence 8776666544
No 174
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.84 Score=51.29 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHc--ccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhh
Q 001749 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK--YAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (1018)
Q Consensus 71 l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~--~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~ 148 (1018)
...+..+.+-..++....+ ++..||...+++++.+.. ...+++.++.+...+..-+.+..+.+|..|+.+|..+-+.
T Consensus 78 ~e~DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred chhhHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Confidence 3445666677777777664 889999999999999886 3344455677777777788888999999999999988643
Q ss_pred hhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 001749 149 IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGS 186 (1018)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~ 186 (1018)
-.+.-. .+..++...++++|+++||.+|+.++..
T Consensus 157 ~~dee~----~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 157 PKDEEC----PVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CCCCcc----cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 332211 2445555666655999999999988744
No 175
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=97.02 E-value=0.061 Score=56.13 Aligned_cols=164 Identities=14% Similarity=0.190 Sum_probs=114.5
Q ss_pred ChhHHHHHH-HHHHHHhh--cChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHH----HH--hhhhH
Q 001749 350 SPKYREAAV-TAIGIISE--GCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI----VS--HYESV 420 (1018)
Q Consensus 350 ~~~~r~aal-~~l~~l~~--~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~--~~~~~ 420 (1018)
.|+...+.. ..+..+.. .....+..+.+-++|.++..++|.++.+|..++.++..+...++... .. ..+-+
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~ 167 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVF 167 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHH
Confidence 566655322 33433333 23457778899999999999999999999999999999999876544 22 23444
Q ss_pred HHHHHHhcc--------CCChHHHHHHHHHHHHHHhhh-ccccc---cchHHHH-HHHHHhhcCC----CHhHHHHHHHH
Q 001749 421 LPCILNALE--------DESDEVKEKSYYALAAFCEDM-GEEIL---PFLDPLM-GKLLAALENS----PRNLQETCMSA 483 (1018)
Q Consensus 421 l~~l~~~l~--------~~~~~v~~~a~~al~~l~~~~-~~~~~---~~~~~l~-~~l~~~l~~~----~~~vr~~al~a 483 (1018)
-+.+..++. +.+..+-..+..++..++... .+.-. ..+..++ +.++..+... ...++...++.
T Consensus 168 ~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~ 247 (282)
T PF10521_consen 168 EDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQ 247 (282)
T ss_pred HHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHH
Confidence 555556665 444567778888888887754 11112 2233332 3244443322 47899999999
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHhcc
Q 001749 484 IGSVAAAAEQAFIPYAERVLELLKIFMVLT 513 (1018)
Q Consensus 484 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 513 (1018)
+..++..+|-....|+..+++.+.+.+.+.
T Consensus 248 l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 248 LPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987764
No 176
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.089 Score=58.83 Aligned_cols=267 Identities=16% Similarity=0.181 Sum_probs=144.3
Q ss_pred cchHHHHHHhhcC-CChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChh
Q 001749 117 PDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (1018)
Q Consensus 117 ~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~ 195 (1018)
.+....|.+++++ +++..|++++.-|+-.. . ...-.++...+...|.. .+...-.+|.-+++-+.-....
T Consensus 412 ~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~--m----GSa~~eiYe~lKevLy~-D~AvsGEAAgi~MGl~mlGt~~-- 482 (929)
T KOG2062|consen 412 RGITDYLLQQLKTAENEVVRHGACLGLGLAG--M----GSANEEIYEKLKEVLYN-DSAVSGEAAGIAMGLLMLGTAN-- 482 (929)
T ss_pred ccHHHHHHHHHHhccchhhhhhhhhhccchh--c----ccccHHHHHHHHHHHhc-cchhhhhHHHHhhhhHhhCcCc--
Confidence 4478888888875 45678899988887543 1 22233455555556654 3444444555555555433221
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHH-H
Q 001749 196 EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQII-S 274 (1018)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l-~ 274 (1018)
...+..|++... ..+.+.+.+...-.+.-.+-....-.++++..++ . +.++-.|...+-.+ .
T Consensus 483 -----~eaiedm~~Ya~---ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~-------~--dkdpilR~~Gm~t~al 545 (929)
T KOG2062|consen 483 -----QEAIEDMLTYAQ---ETQHEKIIRGLAVGIALVVYGRQEDADPLIKELL-------R--DKDPILRYGGMYTLAL 545 (929)
T ss_pred -----HHHHHHHHHHhh---hhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHh-------c--CCchhhhhhhHHHHHH
Confidence 123333444321 1122233222222222222111222334443332 2 34777777654221 1
Q ss_pred HHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHH
Q 001749 275 WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYR 354 (1018)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r 354 (1018)
..+-. .+++.+..+++.- .++ -++.+|++|..+|+-+...-++ ..+.++.. +..+-++++|
T Consensus 546 Ay~GT-----gnnkair~lLh~a---VsD-------~nDDVrRaAVialGFVl~~dp~-~~~s~V~l---Lses~N~HVR 606 (929)
T KOG2062|consen 546 AYVGT-----GNNKAIRRLLHVA---VSD-------VNDDVRRAAVIALGFVLFRDPE-QLPSTVSL---LSESYNPHVR 606 (929)
T ss_pred HHhcc-----CchhhHHHhhccc---ccc-------cchHHHHHHHHHheeeEecChh-hchHHHHH---HhhhcChhhh
Confidence 11111 1111222222221 122 2235888888887766544333 33334333 2457789999
Q ss_pred HHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChH
Q 001749 355 EAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE 434 (1018)
Q Consensus 355 ~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 434 (1018)
+++.+++|..+.|... ...+..+-+...|+...||+.|+.+++-+.....+...+....+-..+.+.+.+....
T Consensus 607 yGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 607 YGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred hhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 9999999998887543 2345556666789999999999999999887766655555666666666666665543
No 177
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.99 E-value=0.0094 Score=55.73 Aligned_cols=144 Identities=15% Similarity=0.241 Sum_probs=96.7
Q ss_pred hHHHHHHHHhhhcC-CChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHhHhh
Q 001749 335 FPPVFEFASVSCQN-ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEY 408 (1018)
Q Consensus 335 ~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~ 408 (1018)
.|.+++.+...++. .+|..|..++.++|.++.--+-..+ .+..... +.+........ +...
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k--------~~~~~~~~~~~~~~~~~~~~~~l-----~~~~ 74 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK--------SIQKSLDSKSSENSNDESTDISL-----PMMG 74 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh--------cccccCCccccccccccchhhHH-----hhcc
Confidence 45666666666654 4699999999999999865432222 1111111 11222222211 1122
Q ss_pred cCHHHHHhh-hhHHHHHHHhccCCChH-HHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 001749 409 LQPEIVSHY-ESVLPCILNALEDESDE-VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (1018)
Q Consensus 409 ~~~~~~~~~-~~~l~~l~~~l~~~~~~-v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~ 486 (1018)
..+...+|+ .-++..|+..|+|++-. -...+..++..+++..+....||++.+++.++..+++.+...++..+.-++.
T Consensus 75 ~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 75 ISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222233444 45688899999988644 3456889999999888888899999999999999998878999999999998
Q ss_pred HHHHh
Q 001749 487 VAAAA 491 (1018)
Q Consensus 487 l~~~~ 491 (1018)
++...
T Consensus 155 lv~iv 159 (160)
T PF11865_consen 155 LVSIV 159 (160)
T ss_pred HHHHh
Confidence 87654
No 178
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.14 Score=52.89 Aligned_cols=149 Identities=20% Similarity=0.162 Sum_probs=102.5
Q ss_pred CCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHH
Q 001749 129 SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (1018)
Q Consensus 129 s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll 208 (1018)
+.+...++.++.-|..+++.+.....-+-...+..+...+++ ++..+|..|++.+++.++..+.......-.+.++.++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN-SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 456788999999999999987654322222334444458888 8999999999999999998865433333344666666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHH-HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhH
Q 001749 209 NVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (1018)
Q Consensus 209 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~ 281 (1018)
..+. .+++..++..|+-.+..++.+.++....+++. =...+..++++++.+...+..++.++..+.+...
T Consensus 173 ~~ls---~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 173 KILS---SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHc---cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 6542 34556677899999999998776654443321 1334456667666677888888888888776443
No 179
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.97 E-value=0.48 Score=51.69 Aligned_cols=333 Identities=10% Similarity=0.085 Sum_probs=153.6
Q ss_pred ChHHHHHHHHHHHHhhhhhhcc---ccccH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhH
Q 001749 131 QEEHREVALILFSSLTETIGQT---FRPHF---ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI 204 (1018)
Q Consensus 131 ~~~~r~~al~~l~~l~~~~~~~---~~~~~---~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 204 (1018)
+.......+..+..++...+.. |..+. +.....+...|+. ++.-+...|+..++.++.+....... ...
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~~~~~~~~~----~~l 141 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLACFGLAKMEG----SDL 141 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHhcCccccch----hHH
Confidence 3455555566666665554321 11110 1233444456666 67889999999999998876432211 233
Q ss_pred HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHhcCCcc---chhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh
Q 001749 205 PSILNVSRQCLASG-EEDVAVIAFEIFDELIESPAP---LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK 280 (1018)
Q Consensus 205 ~~ll~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~ 280 (1018)
+.+.+.+...+..+ +.+....+..++..++..... +.+. ..++.+..++.+........+.++- ..|+....
T Consensus 142 ~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~---~~v~~L~~~L~~~~~~~Ql~Y~~ll-~lWlLSF~ 217 (429)
T cd00256 142 DYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA---DGVPTLVKLLSNATLGFQLQYQSIF-CIWLLTFN 217 (429)
T ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc---cCHHHHHHHHhhccccHHHHHHHHH-HHHHHhcc
Confidence 33444444444432 345566677888888765422 1111 1334444444433224455555442 22344333
Q ss_pred HHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-----hhchHHHH----HHHHhhhcCCCh
Q 001749 281 YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----KHVFPPVF----EFASVSCQNASP 351 (1018)
Q Consensus 281 ~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-----~~~~~~~~----~~l~~~l~~~~~ 351 (1018)
+...... .-..+++.+..++..... ..+-+.+..++..+...-. ....+.++ +.+.+.++...|
T Consensus 218 ~~~~~~~-~~~~~i~~l~~i~k~s~K------EKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 218 PHAAEVL-KRLSLIQDLSDILKESTK------EKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHHhh-ccccHHHHHHHHHHhhhh------HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 3321111 112345555555544321 1344444555555544221 11111111 111233444444
Q ss_pred hHHH--HHHHHHHHHhhcChHHHHHhHHHHHHHHHh-hcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhc
Q 001749 352 KYRE--AAVTAIGIISEGCAEWMKEKLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL 428 (1018)
Q Consensus 352 ~~r~--aal~~l~~l~~~~~~~~~~~l~~l~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l 428 (1018)
..-+ ..+..+....+...+.+. .+++-..-+.. .|.. +|.-+...+|.=. + ..+.+.--.++..|.+.|
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~lt-sfD~Y~~El~sg~L~W-Sp~H~se~FW~EN--~----~kf~~~~~~llk~L~~iL 362 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLS-SFDEYKSELRSGRLHW-SPVHKSEKFWREN--A----DRLNEKNYELLKILIHLL 362 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHhcCCccC-CCCCCCchHHHHH--H----HHHHhcchHHHHHHHHHH
Confidence 3222 112222222211111100 11222222222 2221 2222222222211 0 011111124566666666
Q ss_pred c-CCChHHHHHHHHHHHHHHhhhc--cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001749 429 E-DESDEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1018)
Q Consensus 429 ~-~~~~~v~~~a~~al~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~ 488 (1018)
. +.++.+..-||.=++.|++..+ ..+..-+ ..=..+++++++++++||.+|+.|+..+.
T Consensus 363 ~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~l-g~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 363 ETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL-GGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred hcCCCcceeehhhhhHHHHHHHCccHHHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4 3345677788999999999874 3332211 13456778889999999999999998763
No 180
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.95 E-value=1.1 Score=51.18 Aligned_cols=381 Identities=15% Similarity=0.180 Sum_probs=186.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHh----cCCCc---HHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhhccCCHHHHHH
Q 001749 7 LLLIQFLMPDNDARRQAEDQIKRLA----KDPQV---VPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAKLSPQLKQL 78 (1018)
Q Consensus 7 ~~l~~~~s~d~~~r~~A~~~L~~~~----~~p~~---~~~l~~~l~~~~-~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~ 78 (1018)
.+|..+.||+..+|++.-+.+.++. ..|+. +..|+....+.. ++-+|.++.++++.-+. .++.+.+..
T Consensus 27 plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~----Rl~~~e~~~ 102 (501)
T PF13001_consen 27 PLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD----RLDDEERRE 102 (501)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh----cCCHHHHHH
Confidence 4455567999999999999998754 34664 678888888765 78999999999987754 468999999
Q ss_pred HHHHHHHHHhhcCC--HHHHHHHHHHHHHHHccc----CCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhh----h
Q 001749 79 VKQSLIESITLEHS--APVRRASANVVSIIAKYA----VPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE----T 148 (1018)
Q Consensus 79 i~~~Ll~~l~~e~~--~~vr~~~~~~l~~i~~~~----~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~----~ 148 (1018)
+...+++.+..-+. ......++..+-.+.+.. .| ..|.+.-........=.+.......+.-++.+.. .
T Consensus 103 llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~~~ 181 (501)
T PF13001_consen 103 LLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEP-PRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQPNR 181 (501)
T ss_pred HHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccc-cccchhhhcHHHHHhhcchHHHHHcchhhcccccccccc
Confidence 99999999973111 111122222222222211 11 1222211111111000000000001111111100 0
Q ss_pred ---h-------hccccc-----------------cHH----HHHHHHHH--------------hcCCCCCHHHHHHHHHH
Q 001749 149 ---I-------GQTFRP-----------------HFA----DMQALLLK--------------CLQDETSNRVRIAALKA 183 (1018)
Q Consensus 149 ---~-------~~~~~~-----------------~~~----~l~~~l~~--------------~l~d~~~~~vr~~a~~~ 183 (1018)
. .+.+.. .+. .++.++.. +-.| ++..|...|-..
T Consensus 182 ~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad-~~~~V~~~ae~~ 260 (501)
T PF13001_consen 182 AYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASAD-SNSSVSDRAEDL 260 (501)
T ss_pred ccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeC-CcchHHHHHHHH
Confidence 0 000000 000 01111111 1122 344455555444
Q ss_pred HHHhhcccCChhhHHHHHhhHHHHHHHHHH-H------hhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHh
Q 001749 184 IGSFLEFTNDGAEVVKFREFIPSILNVSRQ-C------LASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVS 256 (1018)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~------l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~ 256 (1018)
+-++....+++ .++..++....- . ...-++..+...+..|.+-... ....+.+++.+...+
T Consensus 261 LKr~~~~~ed~-------~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~~~~~~~i~~~~l 328 (501)
T PF13001_consen 261 LKRLSVSLEDP-------DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATSFPNILQIVFDGL 328 (501)
T ss_pred HhhcCCCCCCH-------HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhCCccHHHHHhccc
Confidence 44443333221 233333333210 0 0011233444444444432110 123344455544444
Q ss_pred cCCCCChHHHHHHHHHH---HHHHHHhHHHhhhcCChHHHHHHHhhhhccCCC-CCCCCCCcHHHHHHHHHHHHHHHcch
Q 001749 257 SSHNLEPNTRHQAIQII---SWLAKYKYNSLKKHKLVIPILQVMCPLLAESNE-AGEDDDLAPDRAAAEVIDTMALNLAK 332 (1018)
Q Consensus 257 ~~~~~~~~~r~~a~~~l---~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-d~~d~~~~~~~~a~~~l~~l~~~~~~ 332 (1018)
.........|..+++|+ .+.....+....+ ..-+.++.-+.|.+....+ ....++...|..+-++|+.++...+.
T Consensus 329 ~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~ 407 (501)
T PF13001_consen 329 YSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS 407 (501)
T ss_pred cCCccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence 43333557888899999 6666544332111 0122233333344421111 12234456788889999999988874
Q ss_pred hch--HHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHH---HhHHHHH-HHHHhhcCCCChhHHHHHHHHHHHhH
Q 001749 333 HVF--PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK---EKLESVL-HIVLGALRDPEQFVRGAASFALGQFA 406 (1018)
Q Consensus 333 ~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~---~~l~~l~-~~l~~~l~d~~~~Vr~~a~~~l~~l~ 406 (1018)
-+. -.++..+-+.+.++....|-+.-.|++.++......-. ......+ -.+.....+....+|.+|.+....+.
T Consensus 408 l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 408 LFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACF 487 (501)
T ss_pred cccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC
Confidence 321 23455555556778888888888888888876543222 1111222 23344445667778888877666654
No 181
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.41 Score=58.79 Aligned_cols=97 Identities=11% Similarity=0.136 Sum_probs=71.9
Q ss_pred HHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCC
Q 001749 769 MDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPD 848 (1018)
Q Consensus 769 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 848 (1018)
...++-++...+.+.++. |..+...+++..++++. ..|..|++.+.-+....|+...+.+++.+|.+.+.+.|.+
T Consensus 1521 ~~~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~-~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~ 1595 (1621)
T KOG1837|consen 1521 SKLLIAEIASDSVADKDD----LKPLNQKILKKTRSSSR-KARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDED 1595 (1621)
T ss_pred HHHHHHHHHhhccCChhh----hHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhH
Confidence 334444444444444433 44445555666666654 4589999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCcch
Q 001749 849 AMNRRNAAFCVGELCKNGGESA 870 (1018)
Q Consensus 849 ~~vr~~a~~~lg~l~~~~~~~~ 870 (1018)
.+|...+...+..+=...|+.+
T Consensus 1596 ~~Ve~~~q~li~q~e~~lGE~l 1617 (1621)
T KOG1837|consen 1596 DEVECLCQKLIRQLEEVLGEPL 1617 (1621)
T ss_pred HHHHHHHHHHHHHHHHHhchhh
Confidence 9998888887777766666644
No 182
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.94 E-value=0.22 Score=56.78 Aligned_cols=361 Identities=14% Similarity=0.136 Sum_probs=184.8
Q ss_pred ccch-HHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHHhhcccC
Q 001749 116 WPDL-LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM--QALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (1018)
Q Consensus 116 w~~l-l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l--~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~ 192 (1018)
|-+. +|..++.+.+.++.....|...+.-+|-...+ ....+.++ ++.+...+.+ ++.+|+..|+.++-+++--..
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~-ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNK-IKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHH-HHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccC
Confidence 6443 67788888888888877777777776633221 12233333 4666777877 899999999999999975443
Q ss_pred C--hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhH-hHHHHHHHHHH-Hh------cCCCCC
Q 001749 193 D--GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD-SVKSIVHFSLE-VS------SSHNLE 262 (1018)
Q Consensus 193 ~--~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~li~~l~~-~~------~~~~~~ 262 (1018)
. ........+=+|.++..+.+. .|.+++..+-.+|.+|.+.. .++. .+..-+..+.. ++ .+++..
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~t---~D~ev~e~iTg~LWNLSS~D--~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~ 382 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRHT---QDDEVRELITGILWNLSSND--ALKMLIITSALSTLTDNVIIPHSGWEEEPAP 382 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHhh---cchHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhhcccccccCCCCcc
Confidence 3 222233355677788876543 57778877777777776642 1111 11111111111 10 001111
Q ss_pred -----hHHHHHHHHHHHHHHHHhH---HHhhh-cCChHHHHHHHhhhhccCCCCCC-----------------CCC----
Q 001749 263 -----PNTRHQAIQIISWLAKYKY---NSLKK-HKLVIPILQVMCPLLAESNEAGE-----------------DDD---- 312 (1018)
Q Consensus 263 -----~~~r~~a~~~l~~~~~~~~---~~~~~-~~~~~~i~~~l~~~l~~~~~d~~-----------------d~~---- 312 (1018)
.++-..+..+|..+..... +.++. .+.+..++..+-......+-|+. .+-
T Consensus 383 ~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~ 462 (717)
T KOG1048|consen 383 RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKY 462 (717)
T ss_pred cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhh
Confidence 2223333344433322111 11111 12333333222222221111100 000
Q ss_pred -------------CcHHHHHHHHHHHHHHH---------cc--------h--hchHHHHHH-HHhhhcCCChhHHHHHHH
Q 001749 313 -------------LAPDRAAAEVIDTMALN---------LA--------K--HVFPPVFEF-ASVSCQNASPKYREAAVT 359 (1018)
Q Consensus 313 -------------~~~~~~a~~~l~~l~~~---------~~--------~--~~~~~~~~~-l~~~l~~~~~~~r~aal~ 359 (1018)
..+. ....|+..-... ++ . ..-|.++.. +.-.-.+.+...-+++.-
T Consensus 463 ~~~~~~~~~~~~~~~~~-~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaG 541 (717)
T KOG1048|consen 463 RQVLANIARLPGVGPPA-ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAG 541 (717)
T ss_pred hhHhhcccccccCCCcc-cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhh
Confidence 0000 000011110011 01 0 011333332 222224556677788888
Q ss_pred HHHHHhhcCh---HHHHHhH---HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhccCCC
Q 001749 360 AIGIISEGCA---EWMKEKL---ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDES 432 (1018)
Q Consensus 360 ~l~~l~~~~~---~~~~~~l---~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~ 432 (1018)
+|..+.-+.. ..+...+ ++.++.++..++.++..|..+++.+|..++.+.. .++.+ ...|+.|+.+|.+..
T Consensus 542 aLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~ 619 (717)
T KOG1048|consen 542 ALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSG 619 (717)
T ss_pred hHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCC
Confidence 8887776543 2232222 3567889999999999999999999999998753 23332 678999999998764
Q ss_pred h------HHHHHHHHHHHHHHhhhccccccchH-HHHHHHHHhhcCC-CHhHHHHHHHHHHH
Q 001749 433 D------EVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENS-PRNLQETCMSAIGS 486 (1018)
Q Consensus 433 ~------~v~~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~vr~~al~al~~ 486 (1018)
+ .....+|.++.+++......-..+++ .-++.|+.+..+. ++++-+.|...+..
T Consensus 620 ~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~ 681 (717)
T KOG1048|consen 620 PSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDV 681 (717)
T ss_pred CCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 3 46677888888888543222112222 2344444444332 34444444433333
No 183
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.011 Score=63.35 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=114.2
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh
Q 001749 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (1018)
Q Consensus 340 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (1018)
..+.+++.+.+.-.|+++.++++..--|... ..++..+++. .+|.|..||.+|..++|-+|-.-.
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 4566778888999999998877665444322 1344555554 689999999999999998875432
Q ss_pred hHHHHHHHhccC-CChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchh
Q 001749 419 SVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP 497 (1018)
Q Consensus 419 ~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~ 497 (1018)
..++..++.|.+ .++.||...+-+|+-.|...|... .++.|-.+..++..-||..|+-++|.+...+.+...|
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 344455555544 457899999999999998887643 3334444556778899999999999999999899999
Q ss_pred hHHHHHHHHHHHHhcc
Q 001749 498 YAERVLELLKIFMVLT 513 (1018)
Q Consensus 498 ~~~~i~~~l~~~l~~~ 513 (1018)
-+..+...+.+++...
T Consensus 659 ~v~~I~k~f~~vI~~K 674 (926)
T COG5116 659 NVKRIIKKFNRVIVDK 674 (926)
T ss_pred hHHHHHHHHHHHHhhh
Confidence 8888888888777654
No 184
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.82 E-value=0.34 Score=51.29 Aligned_cols=158 Identities=20% Similarity=0.103 Sum_probs=96.5
Q ss_pred cchHHHHH-HhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChh
Q 001749 117 PDLLPFLF-QFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (1018)
Q Consensus 117 ~~ll~~l~-~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~ 195 (1018)
..++..++ ..+++.++..|+.|+.++|-.+-... ....+.++.+...+.. .+..||..|++++..++...+...
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchh
Confidence 35665555 67888999999999999998874433 2344556677777765 588999999999998875543211
Q ss_pred hHHH----HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccch-hHhHHHHHHHHHHHhcCCCCChHHHHHHH
Q 001749 196 EVVK----FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL-GDSVKSIVHFSLEVSSSHNLEPNTRHQAI 270 (1018)
Q Consensus 196 ~~~~----~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~li~~l~~~~~~~~~~~~~r~~a~ 270 (1018)
.... .......+++.+...+.+.+++++..+++.+.++.-...-.- ...+..++-..+.-.. ..+...|..--
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t--~~~~~LrQ~L~ 177 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPST--EDNQRLRQCLS 177 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCccc--CCcHHHHHHHH
Confidence 1001 012344566677777888888999999999999875432211 2333333333222111 11334454444
Q ss_pred HHHHHHHHHhH
Q 001749 271 QIISWLAKYKY 281 (1018)
Q Consensus 271 ~~l~~~~~~~~ 281 (1018)
-|+...+..++
T Consensus 178 ~Ffp~y~~s~~ 188 (298)
T PF12719_consen 178 VFFPVYASSSP 188 (298)
T ss_pred HHHHHHHcCCH
Confidence 45655554433
No 185
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.065 Score=55.30 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=103.5
Q ss_pred cCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHH
Q 001749 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCIL 425 (1018)
Q Consensus 347 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~ 425 (1018)
.+.+...|+.|+.-|..+++.......-.--..+..++..+++++..+|..|++.+|..+..-+..-...+ ...++.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 45678899999999988888654322111112234445589999999999999999999988754322222 24677777
Q ss_pred HhccCC-ChHHHHHHHHHHHHHHhhhccccccchH-HHHHHHHHhhcC--CCHhHHHHHHHHHHHHHHHhhc
Q 001749 426 NALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALEN--SPRNLQETCMSAIGSVAAAAEQ 493 (1018)
Q Consensus 426 ~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~--~~~~vr~~al~al~~l~~~~~~ 493 (1018)
..+... +..+|..|..|+..++++.+.....|+. .=...|..++++ .+...+..++..++.+......
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 777643 4568899999999999998654433332 126677778887 4677888899899888877654
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.14 Score=59.57 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhH-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhH
Q 001749 203 FIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (1018)
Q Consensus 203 ~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~ 281 (1018)
-+|.+++++.. .-.+..|+..|..+++..+..+.-.+ -.|+++.+++++++ -.+.|..-.=.|..+....+
T Consensus 473 QLPiVLQVLLS------QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~--a~ELrpiLVFIWAKILAvD~ 544 (1387)
T KOG1517|consen 473 QLPIVLQVLLS------QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS--ARELRPILVFIWAKILAVDP 544 (1387)
T ss_pred hcchHHHHHHH------HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc--hHhhhhhHHHHHHHHHhcCc
Confidence 46777776522 12466788888888887666544322 23566666666654 33344333223332221100
Q ss_pred HHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHHHHHHH
Q 001749 282 NSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTA 360 (1018)
Q Consensus 282 ~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~ 360 (1018)
.|=..|.+..| .+.+..+-+ -..-+.+.|.-|.+.
T Consensus 545 ---------------------------------------SCQ~dLvKe~g~~YF~~vL~~-----~~~~~~EqrtmaAFV 580 (1387)
T KOG1517|consen 545 ---------------------------------------SCQADLVKENGYKYFLQVLDP-----SQAIPPEQRTMAAFV 580 (1387)
T ss_pred ---------------------------------------hhHHHHHhccCceeEEEEecC-----cCCCCHHHHHHHHHH
Confidence 11122333344 222221111 012235788888899
Q ss_pred HHHHhhcChHHHHHh-HHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhcCHH-HHHhhhhHHHHHHHhccCCChHHHH
Q 001749 361 IGIISEGCAEWMKEK-LESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKE 437 (1018)
Q Consensus 361 l~~l~~~~~~~~~~~-l~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~v~~ 437 (1018)
|+.+..+.+-.-+.- -..++...+..|+|+ .+..|+=.|.|||++=+.+... +...-...-..|...|.|+.++||.
T Consensus 581 LAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRa 660 (1387)
T KOG1517|consen 581 LAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRA 660 (1387)
T ss_pred HHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHH
Confidence 999998865322222 246777888888884 7999999999999998776432 1122234556677788899999999
Q ss_pred HHHHHHHHHHhhhcccc-----------c-----cchHHHHH----HHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc
Q 001749 438 KSYYALAAFCEDMGEEI-----------L-----PFLDPLMG----KLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1018)
Q Consensus 438 ~a~~al~~l~~~~~~~~-----------~-----~~~~~l~~----~l~~~l~~~~~~vr~~al~al~~l~~~~~~~ 494 (1018)
+|..||+.|+.+..+.+ . .-.+..+. .+...+++..+-+|.+...+++.++.....+
T Consensus 661 AAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 661 AAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred HHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 99999999998742111 1 11233333 5666778888899998888888776555443
No 187
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.76 E-value=1.5 Score=49.76 Aligned_cols=268 Identities=12% Similarity=0.104 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHH-HhcCC-CcHHHHHHHHh----cCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcC
Q 001749 18 DARRQAEDQIKR-LAKDP-QVVPALVQHLR----TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (1018)
Q Consensus 18 ~~r~~A~~~L~~-~~~~p-~~~~~l~~~l~----~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~ 91 (1018)
..|-+|-++|.+ +.+-| +.+..+.+... ...+.+.|+.|..++..++....... ...|..+++.+...+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-----~~~R~~fF~~I~~~~ 79 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-----GLMRAEFFRDISDPS 79 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-----HHHHHHHHHHHhcCC
Confidence 356666666654 33333 44444444432 34578899999999999998764432 346667777776544
Q ss_pred CHHHHHHHHHHHHHHHcccCC-CCCccchHHHHHHhhcCC---------------------------ChHHHHHHHHHHH
Q 001749 92 SAPVRRASANVVSIIAKYAVP-AGEWPDLLPFLFQFSQSE---------------------------QEEHREVALILFS 143 (1018)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~-~~~w~~ll~~l~~~~~s~---------------------------~~~~r~~al~~l~ 143 (1018)
.+..-..--+++..+...+-. ...-.++.|.+..|+..- +...-...+..+.
T Consensus 80 ~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 159 (464)
T PF11864_consen 80 NDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLV 159 (464)
T ss_pred CchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHH
Confidence 444444455666666553211 123466777777776311 1111122333344
Q ss_pred Hhhhhhhcccc-ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHH
Q 001749 144 SLTETIGQTFR-PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDV 222 (1018)
Q Consensus 144 ~l~~~~~~~~~-~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 222 (1018)
.+++.....+. ..+..++..+........+...-..++..+..++.|..-| ...++.++.++....+.. +.
T Consensus 160 nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP------~~sl~~~i~vLCsi~~~~--~l 231 (464)
T PF11864_consen 160 NVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP------SESLSPCIEVLCSIVNSV--SL 231 (464)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC------hHHHHHHHHHHhhHhccc--cc
Confidence 44433222222 3445555544444333244444477888888888776433 234555666665544322 55
Q ss_pred HHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCC----CChHHHHHHHHHHHHHHHHhHHH-hhhcCCh-HHHHHH
Q 001749 223 AVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN----LEPNTRHQAIQIISWLAKYKYNS-LKKHKLV-IPILQV 296 (1018)
Q Consensus 223 ~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~----~~~~~r~~a~~~l~~~~~~~~~~-~~~~~~~-~~i~~~ 296 (1018)
...+.+++..++..+. -...+..++.++.+++ .+..+-+.|+.++..+.-..+.. +...++. ..+++.
T Consensus 232 ~~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~s 305 (464)
T PF11864_consen 232 CKPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPS 305 (464)
T ss_pred chhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHH
Confidence 5667777777775322 2344555555552221 23344456777776655433111 1111111 126666
Q ss_pred HhhhhccC
Q 001749 297 MCPLLAES 304 (1018)
Q Consensus 297 l~~~l~~~ 304 (1018)
+...|...
T Consensus 306 l~~al~~~ 313 (464)
T PF11864_consen 306 LLNALKSN 313 (464)
T ss_pred HHHHHhCC
Confidence 66666543
No 188
>PF05536 Neurochondrin: Neurochondrin
Probab=96.70 E-value=1.8 Score=49.82 Aligned_cols=238 Identities=16% Similarity=0.139 Sum_probs=142.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHH--HH-HhHHHH-HHHHHhhcCC-------CChhHHHHHHHHHHHh
Q 001749 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEW--MK-EKLESV-LHIVLGALRD-------PEQFVRGAASFALGQF 405 (1018)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~--~~-~~l~~l-~~~l~~~l~d-------~~~~Vr~~a~~~l~~l 405 (1018)
..+..+...+++.+-..|.+++..+..+..+.... .. ...+.+ ++++-+.|+. +...-+.-|+..+..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34555667788888889999999999998864311 11 111222 2344444543 2345577788888888
Q ss_pred HhhcCHHHH--HhhhhHHHHHHHhccCCCh-HHHHHHHHHHHHHHhhhccccccchH-HHHHHHHHhhcCCCHhHHHHHH
Q 001749 406 AEYLQPEIV--SHYESVLPCILNALEDESD-EVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCM 481 (1018)
Q Consensus 406 ~~~~~~~~~--~~~~~~l~~l~~~l~~~~~-~v~~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~vr~~al 481 (1018)
+. .+++. +.+-.-+|.+++.+...+. .+...|..+|..++ ..++.-...+. ..++.|.+.+.+ .....+.++
T Consensus 85 ~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred cC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 87 35554 4566778999999987776 78888999999998 33322222222 455666666655 566788889
Q ss_pred HHHHHHHHHhhccch----hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhh-hcCC----ChHHHHHHHH
Q 001749 482 SAIGSVAAAAEQAFI----PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA-RMEP----ILPPFVEAAI 552 (1018)
Q Consensus 482 ~al~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~-~~~~----~~~~l~~~l~ 552 (1018)
..+..+....+.... ..+..+++.+...+....+. .|-..+..++.+-...+.. .-.+ ....+...+.
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~---~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~ 237 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGE---DKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR 237 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence 888888777663322 23344555555544432211 2223444444444333211 1111 2344444444
Q ss_pred hccCC-CChhHHHHHHHHHHHHHHHcccCc
Q 001749 553 SGFGL-EFSELREYTHGFFSNIAGVLEDGF 581 (1018)
Q Consensus 553 ~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~ 581 (1018)
..+++ ..+.-|..++...+.+...+|.++
T Consensus 238 ~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 238 DILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 45553 356778889999999998888654
No 189
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.25 Score=55.07 Aligned_cols=177 Identities=17% Similarity=0.210 Sum_probs=125.4
Q ss_pred HHhcCCChHHHHHHHHHHHHHh--cCCCc--------H----HHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHH
Q 001749 10 IQFLMPDNDARRQAEDQIKRLA--KDPQV--------V----PALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQL 75 (1018)
Q Consensus 10 ~~~~s~d~~~r~~A~~~L~~~~--~~p~~--------~----~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~ 75 (1018)
.++.-+|.++|..|..-+-++. .+|+. + ..+..++ .++.|.+|..|..-+.+.+...|..+++..
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLL-EDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 4455789999999988887765 46654 1 2333434 466799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccc
Q 001749 76 KQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP 155 (1018)
Q Consensus 76 ~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~ 155 (1018)
...+...++..+..|+...||-..-..+..++-.-........++|.+-..+.++...+|.++..++..+=..-.-
T Consensus 260 ~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~---- 335 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA---- 335 (1005)
T ss_pred HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh----
Confidence 9999999999999888889999999998888764333345666788888888888889999998888877433221
Q ss_pred cHHHHH--HHHHHhcCCCCCHHHHHHHHHHHHHhhccc
Q 001749 156 HFADMQ--ALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (1018)
Q Consensus 156 ~~~~l~--~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~ 191 (1018)
.+..++ ..++..|..++.+.-|..+.-.+..+....
T Consensus 336 ~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~ 373 (1005)
T KOG1949|consen 336 KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVN 373 (1005)
T ss_pred hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Confidence 112222 223334443255555555555555555444
No 190
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.56 E-value=2.1 Score=49.00 Aligned_cols=177 Identities=15% Similarity=0.198 Sum_probs=117.6
Q ss_pred CcHHHHHHHHHHHHHHHcc-hhchHHHHHHHH--hh-----hcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHH
Q 001749 313 LAPDRAAAEVIDTMALNLA-KHVFPPVFEFAS--VS-----CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVL 384 (1018)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~--~~-----l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~ 384 (1018)
.++...|...|.++...+. ..++..++.... .. ..-.++..|.-.+-.|..-... ....+.++..+.
T Consensus 251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~~~~~~~i~~ 325 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATSFPNILQIVF 325 (501)
T ss_pred chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhCCccHHHHHh
Confidence 4567777888887776655 445555555433 10 0012344444444333321110 123467788888
Q ss_pred hhcCCC--ChhHHHHHHHHH---HHhHhhcCHHHHH-hhhhHHHHHHHhcc--------CCChHHHHHHHHHHHHHHhhh
Q 001749 385 GALRDP--EQFVRGAASFAL---GQFAEYLQPEIVS-HYESVLPCILNALE--------DESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 385 ~~l~d~--~~~Vr~~a~~~l---~~l~~~~~~~~~~-~~~~~l~~l~~~l~--------~~~~~v~~~a~~al~~l~~~~ 450 (1018)
.++..+ +.++|..++..+ .....++++.... .-+.++..+.+.+. ..+...|..+..+||.+++..
T Consensus 326 ~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~ 405 (501)
T PF13001_consen 326 DGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRA 405 (501)
T ss_pred ccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccC
Confidence 888877 889999999999 8888888775543 33455555666663 123468899999999999998
Q ss_pred ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccc
Q 001749 451 GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (1018)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~ 495 (1018)
+..+..- -.++..|+..+......+|..+-+|+++++.+.....
T Consensus 406 p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~ 449 (501)
T PF13001_consen 406 PSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLP 449 (501)
T ss_pred ccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccc
Confidence 7755322 3577888888888899999999999999998877543
No 191
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.53 E-value=0.065 Score=50.12 Aligned_cols=149 Identities=13% Similarity=0.312 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHH
Q 001749 688 DTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEV 767 (1018)
Q Consensus 688 ~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1018)
..+++.+++.++.|.+.+++.+++..++- .| ++.|+..+-+ .+... +... .+..++....
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGi----lG--ALDP~~~k~~-------~~~~~-----~~~~--~~~~~~~~~~ 68 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGI----LG--ALDPYKHKSI-------QKSLD-----SKSS--ENSNDESTDI 68 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhh----cc--ccCcHHHhcc-------cccCC-----cccc--ccccccchhh
Confidence 45777788888888888888877766654 34 3455533211 11000 0000 0000011101
Q ss_pred HHHHHHhHHHHHHHHhCCChHHHHHH-HHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCC
Q 001749 768 IMDAVSDLLPAFAKSMGPHFAPIFAK-LFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELAS 846 (1018)
Q Consensus 768 ~~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 846 (1018)
.+ .....+.....|+.. .+..+++.+++..-...+..++..+-.+++..|..+.+|+++++|.++..++.
T Consensus 69 ~l---------~~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~ 139 (160)
T PF11865_consen 69 SL---------PMMGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT 139 (160)
T ss_pred HH---------hhccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh
Confidence 00 111122244456665 66788999998766666778899999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 001749 847 PDAMNRRNAAFCVGELCKN 865 (1018)
Q Consensus 847 ~~~~vr~~a~~~lg~l~~~ 865 (1018)
.+...|+...+-|+.++..
T Consensus 140 ~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 140 CPDSLREFYFQQLADLVSI 158 (160)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7779998888888877653
No 192
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.48 E-value=0.02 Score=49.24 Aligned_cols=98 Identities=9% Similarity=0.206 Sum_probs=79.4
Q ss_pred cccchHHHHHHHHHhhcC----CCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHH
Q 001749 454 ILPFLDPLMGKLLAALEN----SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLG 529 (1018)
Q Consensus 454 ~~~~~~~l~~~l~~~l~~----~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~ 529 (1018)
+.+++=.++..+...+.+ .+...|..++.+++.+.+.+++...++.++++-.|+..+... .++..+++|+.
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~-----~l~~~al~~W~ 79 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP-----ELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh-----hhHHHHHHHHH
Confidence 445555677777777766 467789999999999999888888899999998888877543 57888999999
Q ss_pred HHHHhhhhhhcCCChHHHHHHHHhccC
Q 001749 530 LVAESVGRARMEPILPPFVEAAISGFG 556 (1018)
Q Consensus 530 ~l~~~~g~~~~~~~~~~l~~~l~~~l~ 556 (1018)
.+.+.++.+.+.|.++.++-.++..|+
T Consensus 80 ~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 80 CFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999988888888888877776553
No 193
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.47 E-value=2.7 Score=49.14 Aligned_cols=106 Identities=16% Similarity=0.241 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 001749 158 ADMQALLLKCLQ-DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (1018)
Q Consensus 158 ~~l~~~l~~~l~-d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 236 (1018)
..++.++...++ | ....||++|+..+..+..+... ...+|..+.+++..-.++-..++..++..|.++...
T Consensus 575 ~~V~~mi~Rr~~~d-~k~~v~k~a~~~l~S~l~~cD~-------~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~ 646 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTD-DKAPVKKAACSLLKSYLSYCDE-------ASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR 646 (1529)
T ss_pred HHHHHHHHHHhccC-CCcccchhhHHHHHHHHhccch-------hhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh
Confidence 345677777777 5 5667999999999998888742 234555555555555666778899999999999887
Q ss_pred CccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 001749 237 PAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (1018)
Q Consensus 237 ~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~ 274 (1018)
.|..+. .-...+..+..++. +.+..+...|..++.
T Consensus 647 ~pr~~~-~~~~wl~~li~~~~--d~es~v~e~a~~~i~ 681 (1529)
T KOG0413|consen 647 DPRLFS-LSSKWLHTLISMLN--DTESDVTEHARKLIM 681 (1529)
T ss_pred Cchhhh-hhHHHHHHHHHHHh--ccHHHHHHHHHHHHH
Confidence 777661 11112222222222 234456666666543
No 194
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.40 E-value=2 Score=46.99 Aligned_cols=276 Identities=10% Similarity=0.094 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHhcCC--ccch-
Q 001749 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-------GEEDVAVIAFEIFDELIESP--APLL- 241 (1018)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-------~~~~~~~~a~~~l~~l~~~~--~~~~- 241 (1018)
.+..-|.-|...+....+......+.....+.++.+++.+.+-+.. .+.+....|+++++.+.-+. ...+
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~ 84 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLS 84 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCC
Confidence 3445566676667666655443334556677788888877665554 25567788999988877432 1111
Q ss_pred hHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHH
Q 001749 242 GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAE 321 (1018)
Q Consensus 242 ~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~ 321 (1018)
.....-++..++..+.++..+..+....+.++.. . ++-+.++ ...
T Consensus 85 ~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~---Q--------~f~~~~~------------------------~~~ 129 (372)
T PF12231_consen 85 DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD---Q--------KFSPKIM------------------------TSD 129 (372)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---C--------CCCCccc------------------------chh
Confidence 1222224455555555544443333333332211 0 0000000 000
Q ss_pred HHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHH
Q 001749 322 VIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFA 401 (1018)
Q Consensus 322 ~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~ 401 (1018)
....+ -..+..+.+.+.+ -..-.-.+.++..+....+..+..+...-++.++..+-+....+|..|..+
T Consensus 130 ~~~~l---------~~~l~~i~~~~~s--~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l 198 (372)
T PF12231_consen 130 RVERL---------LAALHNIKNRFPS--KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISL 198 (372)
T ss_pred hHHHH---------HHHHHHhhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 00000 0011111111222 223344566777777778888888888888888888888899999988777
Q ss_pred HHHhHhhcCHHH--HH--------------hhhhHHHHHHHhccCCChHHH-HHHHHHHHHHHhhhccccccchHHHHHH
Q 001749 402 LGQFAEYLQPEI--VS--------------HYESVLPCILNALEDESDEVK-EKSYYALAAFCEDMGEEILPFLDPLMGK 464 (1018)
Q Consensus 402 l~~l~~~~~~~~--~~--------------~~~~~l~~l~~~l~~~~~~v~-~~a~~al~~l~~~~~~~~~~~~~~l~~~ 464 (1018)
+..+...+++.. .. +.+.+.+.+.+.+.++...+. -..-.++..+.....-.--+++...+..
T Consensus 199 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v 278 (372)
T PF12231_consen 199 LLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKV 278 (372)
T ss_pred HHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHH
Confidence 777766665421 01 112223333444444221111 1111222222211111223678888888
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001749 465 LLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (1018)
Q Consensus 465 l~~~l~~~~~~vr~~al~al~~l~~~~~~ 493 (1018)
...+++++++.+|..|+.+...++.....
T Consensus 279 ~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 279 PEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 88899999999999999999999986553
No 195
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=1.3 Score=49.82 Aligned_cols=126 Identities=15% Similarity=0.153 Sum_probs=77.6
Q ss_pred HHHHHHHHhhhhhhcc--ccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHH
Q 001749 137 VALILFSSLTETIGQT--FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC 214 (1018)
Q Consensus 137 ~al~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 214 (1018)
..+..+..++++.++. -...++.++..++++... ++..||...+..+..+......-+ ..++..+...+...
T Consensus 61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eid-----d~vfn~l~e~l~~R 134 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEID-----DDVFNKLNEKLLIR 134 (892)
T ss_pred HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccC-----HHHHHHHHHHHHHH
Confidence 3444555555554421 122456667777777777 889999999999998887442211 23444455555555
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 001749 215 LASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQII 273 (1018)
Q Consensus 215 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l 273 (1018)
+.|..+.++..|.-+|..+-+....---+ +.+.+..++++ |.++++|+.|+..+
T Consensus 135 l~Drep~VRiqAv~aLsrlQ~d~~dee~~----v~n~l~~liqn-DpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 135 LKDREPNVRIQAVLALSRLQGDPKDEECP----VVNLLKDLIQN-DPSDEVRRAALSNI 188 (892)
T ss_pred HhccCchHHHHHHHHHHHHhcCCCCCccc----HHHHHHHHHhc-CCcHHHHHHHHHhh
Confidence 67888899999999999887533221111 22333333444 46888998887654
No 196
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.33 E-value=0.79 Score=51.05 Aligned_cols=240 Identities=18% Similarity=0.180 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHhhcChHHHHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHH-hhhhHHHHHHHhc
Q 001749 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS-HYESVLPCILNAL 428 (1018)
Q Consensus 351 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~-~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~~l 428 (1018)
++.|.+|..+||.++...+. +.+..++. .+..+|++++..=|..|+..+..++......... ..+.+.+.|...|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 67899999999999987543 23345555 6889999999999999999999999876432111 1245666666666
Q ss_pred cCCC-----------hHHHHHHHHHHHHHHhhhc--cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccc
Q 001749 429 EDES-----------DEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (1018)
Q Consensus 429 ~~~~-----------~~v~~~a~~al~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~ 495 (1018)
.++. .++|..+-..+..|.+... ..-.|.++.+++.--.. .+...--+.|-...+.........+
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~--~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEA--GPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhcccccccccccccc--CCccCCHHHHHHHHHHHHHHHHHhc
Confidence 6432 2355555555555554432 11112222111100000 0011111122222222211111111
Q ss_pred hh--------hH----HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccC-CCChhH
Q 001749 496 IP--------YA----ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG-LEFSEL 562 (1018)
Q Consensus 496 ~~--------~~----~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~-~~~~~~ 562 (1018)
.+ -+ ..+...+...-... .....|-.+.-+-+.++...=|+++.|.+.++|+. ++ .++..+
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~--~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdS----IK~Een~~L 329 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQ--TSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDS----IKREENELL 329 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH----hhccccHHH
Confidence 11 00 01111111100000 01112222221111222111145666666666666 44 346788
Q ss_pred HHHHHHHHHHHHHHcccCcccchhhhhHHHHhhccCCCC
Q 001749 563 REYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDG 601 (1018)
Q Consensus 563 ~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~ 601 (1018)
+..+..++..+...+-..-..--++|+..|...+-.|..
T Consensus 330 Q~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~s 368 (441)
T PF12054_consen 330 QQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTS 368 (441)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcc
Confidence 888889999998877744444457899998888766543
No 197
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=1.1 Score=50.25 Aligned_cols=200 Identities=14% Similarity=0.166 Sum_probs=118.5
Q ss_pred hhhccCCHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHcccCCCCCccch-----HHHHHHhhcCCChHHHH
Q 001749 66 GHWAKLSPQLKQLVKQSLIESITL----EHSAPVRRASANVVSIIAKYAVPAGEWPDL-----LPFLFQFSQSEQEEHRE 136 (1018)
Q Consensus 66 ~~w~~l~~~~~~~i~~~Ll~~l~~----e~~~~vr~~~~~~l~~i~~~~~~~~~w~~l-----l~~l~~~~~s~~~~~r~ 136 (1018)
+.|...+-+....|-+-.++.+.. .+...+-...-++++.++...-.+....++ =|.+++.++..+.++|.
T Consensus 113 rAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~Vrs 192 (1005)
T KOG1949|consen 113 RAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRS 192 (1005)
T ss_pred HHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhh
Confidence 368765555555555555554432 233355566667777776543111233343 36778888889999999
Q ss_pred HHHHHHHHhhhhhhccc-----cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhc----ccCChhhHHHHHhhHHHH
Q 001749 137 VALILFSSLTETIGQTF-----RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLE----FTNDGAEVVKFREFIPSI 207 (1018)
Q Consensus 137 ~al~~l~~l~~~~~~~~-----~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~----~~~~~~~~~~~~~~~~~l 207 (1018)
+|+.+|-.+.--.++.. ...++.-...+...|.| +-+.||..|...+..... ..+. .++..+
T Consensus 193 nAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d-~~p~VRS~a~~gv~k~~s~fWe~iP~--------~i~~~l 263 (1005)
T KOG1949|consen 193 NAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLED-PYPMVRSTAILGVCKITSKFWEMIPP--------TILIDL 263 (1005)
T ss_pred hHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcCH--------HHHHHH
Confidence 99888877654333222 22233334567788888 899999999877766543 3331 122223
Q ss_pred HHHHHH-HhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 001749 208 LNVSRQ-CLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (1018)
Q Consensus 208 l~~l~~-~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~ 278 (1018)
+..+.. ...+...+++.+.+++|..++..... -+.+..+++.+-..+. |.++.+|..+...+..+-.
T Consensus 264 l~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~--D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 264 LKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLH--DNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhh--ccchhHHHHHHHHHHHHHh
Confidence 332222 22345668999999999999875432 2334444443222233 3477899999888776643
No 198
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.22 E-value=0.71 Score=52.38 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=116.5
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHH
Q 001749 702 DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAK 781 (1018)
Q Consensus 702 ~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 781 (1018)
.++......+..+..++..+.... ....+++.+.+.+... .+.-.+..++-.+++
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv---~~~kiLP~L~~el~n~----------------------~~vp~~LP~v~~i~~ 339 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARV---LFQKILPTLVAELVNT----------------------KMVPIVLPLVLLIAE 339 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHH---HHHhhhhHHHHHhccc----------------------cccccccchhhhhhh
Confidence 455566677777888777765432 3344444444444221 011112233333333
Q ss_pred HhCCChHHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHH
Q 001749 782 SMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGE 861 (1018)
Q Consensus 782 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~ 861 (1018)
+..-..|-..++|.|.+.++...+...+.+-+.=+.-+.+... .....+.++|.+...+++.+..+...++..+..
T Consensus 340 --~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~--~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lpt 415 (700)
T KOG2137|consen 340 --GLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP--PEEVKEKILPLLYRSLEDSDVQIQELALQILPT 415 (700)
T ss_pred --ccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC--hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhH
Confidence 3334456677888888888764432223333333334444433 346788999999999999999999999999999
Q ss_pred HHhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 001749 862 LCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLL 923 (1018)
Q Consensus 862 l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l 923 (1018)
+++...- .-.-..|++.|..+ .....+..++-|++.|++.++.......-+++++|.+.
T Consensus 416 v~e~iD~--~~vk~~ilP~l~~l-~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~ 474 (700)
T KOG2137|consen 416 VAESIDV--PFVKQAILPRLKNL-AFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILK 474 (700)
T ss_pred HHHhccH--HHHHHHHHHHhhcc-hhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9988753 22334567777777 33456778999999999999965422111455555433
No 199
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.20 E-value=0.11 Score=58.31 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=139.2
Q ss_pred CChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhh
Q 001749 288 KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (1018)
Q Consensus 288 ~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 366 (1018)
+|...+++.+++++...+ ..+|-.-.+-++.+...+. ..+-..++|.+...+.+.+...|+-++.++..++.
T Consensus 326 eyq~~i~p~l~kLF~~~D-------r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPD-------RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred ccccchhhhHHHHhcCcc-------hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 466678888888887654 2567667777778888887 44557889999999999999999999999999988
Q ss_pred cChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001749 367 GCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1018)
Q Consensus 367 ~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (1018)
...+. ..-..++..+-+.-.|.+..+|.....|+|.++.+..+.... ..+.....+.+.|+-..-|.++..++..-
T Consensus 399 kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 399 KLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred hhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 76544 112356777777767999999999999999999987664422 23334445578888777788888777766
Q ss_pred HhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001749 447 CEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1018)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~ 489 (1018)
.+.+.. ......|++.+....-+.+..+|..+..++...-.
T Consensus 475 ~~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 475 QEYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 555432 23355677777777788888999999888765433
No 200
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.19 E-value=0.07 Score=45.91 Aligned_cols=98 Identities=19% Similarity=0.327 Sum_probs=75.1
Q ss_pred HHHHhHHHHHHHHHhhcCC----CChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001749 371 WMKEKLESVLHIVLGALRD----PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1018)
Q Consensus 371 ~~~~~l~~l~~~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (1018)
.+.+++-.++..+-..+.| ....-|..++.+++.+.+..++.+....++++-.|...+..+ .++..++.+...|
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 4445555555555555555 466678899999999999777777777788888777777765 7899999999999
Q ss_pred Hhhh-ccccccchHHHHHHHHHhhc
Q 001749 447 CEDM-GEEILPFLDPLMGKLLAALE 470 (1018)
Q Consensus 447 ~~~~-~~~~~~~~~~l~~~l~~~l~ 470 (1018)
++.+ .+++.|+++.++-.+.+.++
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999 45678888888887776654
No 201
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.15 E-value=0.61 Score=49.38 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcccc--
Q 001749 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-- 154 (1018)
Q Consensus 77 ~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~-- 154 (1018)
..+...++.++.+ +++.+|..+.+|+|..+-.+. ..-.+.++.+.+.++.++...+..|+.++..+.-..|....
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 3444555577775 788999999999998876543 23466788888888777888999999999988876653221
Q ss_pred -------ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhccc
Q 001749 155 -------PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (1018)
Q Consensus 155 -------~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~ 191 (1018)
.....+..++...+.+ .++++|..|++.+++++-..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcC
Confidence 1234688899999988 68899999999999986544
No 202
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.12 E-value=0.083 Score=58.31 Aligned_cols=236 Identities=17% Similarity=0.187 Sum_probs=147.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHh-cCCCcH----H----HHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHH
Q 001749 4 SLELLLIQFLMPDNDARRQAEDQIKRLA-KDPQVV----P----ALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (1018)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~-~~p~~~----~----~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~ 74 (1018)
-+.+++..+.|+|+..|......|-.+. +-++.- . .+.+.+-.+.....=.-..-++...++..-..+.++
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 3567788888999999999999998765 344421 2 222222222222222223444555555554567888
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhh-ccc
Q 001749 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTF 153 (1018)
Q Consensus 75 ~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~-~~~ 153 (1018)
.+..+...++.......-......+..|+..+...+. .--..++..++...-..+......-+.-+..+++..+ ..+
T Consensus 214 h~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f 291 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEF 291 (409)
T ss_dssp HHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHH
Confidence 8999999998888764455667888999988887652 2334455666655545555555677888888887654 456
Q ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--hhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 001749 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGS--FLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIF 230 (1018)
Q Consensus 154 ~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~a~~~l 230 (1018)
......++..+..++++ ++.+|-..|+..+.+ ++....+ .-..++|.+...+.+..... +..++..+..++
T Consensus 292 ~~i~~~lf~~la~ci~S-~h~qVAErAl~~w~n~~~~~li~~-----~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl 365 (409)
T PF01603_consen 292 QKIMVPLFKRLAKCISS-PHFQVAERALYFWNNEYFLSLISQ-----NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVL 365 (409)
T ss_dssp HHHHHHHHHHHHHHHTS-SSHHHHHHHHGGGGSHHHHHHHHC-----THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHCCHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66778888999999998 899998888866532 1222211 11346666666654433222 457888899999
Q ss_pred HHHhcCCccchhHhHHH
Q 001749 231 DELIESPAPLLGDSVKS 247 (1018)
Q Consensus 231 ~~l~~~~~~~~~~~~~~ 247 (1018)
..+.+..+..+......
T Consensus 366 ~~l~~~d~~lf~~~~~~ 382 (409)
T PF01603_consen 366 KILMEMDPKLFDKCAQK 382 (409)
T ss_dssp HHHHTTSHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHH
Confidence 98888888877664433
No 203
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.03 E-value=0.048 Score=46.44 Aligned_cols=97 Identities=11% Similarity=0.192 Sum_probs=75.0
Q ss_pred cccchHHHHHHHHHhhcCCC----HhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHH
Q 001749 454 ILPFLDPLMGKLLAALENSP----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLG 529 (1018)
Q Consensus 454 ~~~~~~~l~~~l~~~l~~~~----~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~ 529 (1018)
+.+++=.++..+...+.+.+ ..-|..++.+|+.+++.++.....+.++++-.|...+..+ ++|..+++|+.
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~-----eL~~~al~~W~ 79 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP-----ELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----hHHHHHHHHHH
Confidence 44556667777777776653 4569999999999999999988899999998888877543 47889999999
Q ss_pred HHHHhhhhhhcCCChHHHHHHHHhcc
Q 001749 530 LVAESVGRARMEPILPPFVEAAISGF 555 (1018)
Q Consensus 530 ~l~~~~g~~~~~~~~~~l~~~l~~~l 555 (1018)
.+.+.+..+...|.+..++-.++..+
T Consensus 80 ~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 80 VLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99998887666666666666555443
No 204
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.95 E-value=0.088 Score=44.88 Aligned_cols=97 Identities=20% Similarity=0.370 Sum_probs=74.8
Q ss_pred HHHHhHHHHHHHHHhhcCCCC--h--hHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001749 371 WMKEKLESVLHIVLGALRDPE--Q--FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1018)
Q Consensus 371 ~~~~~l~~l~~~l~~~l~d~~--~--~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (1018)
.+.+++-.++..+-..+.|.+ . .-|..+..+++.+.+..++.+..+.++++-.|..+|..+ ..|..|+.+...|
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~ 81 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHH
Confidence 455666666777777777765 2 348899999999999888888888888888888888754 6999999999999
Q ss_pred Hhhhc-cccccchHHHHHHHHHhh
Q 001749 447 CEDMG-EEILPFLDPLMGKLLAAL 469 (1018)
Q Consensus 447 ~~~~~-~~~~~~~~~l~~~l~~~l 469 (1018)
+...+ +++.|.++.++..+.+.+
T Consensus 82 i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 82 IKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99984 456676776666665544
No 205
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.17 Score=53.04 Aligned_cols=132 Identities=21% Similarity=0.279 Sum_probs=110.5
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh-ccccccch
Q 001749 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFL 458 (1018)
Q Consensus 380 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~-~~~~~~~~ 458 (1018)
+..++..+++.+..||..|..-+..+....+.....++..+++.+.....|.+..||.....++..++... +..+.|++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 44566777899999999999999999888555556678889999999999999999999999999987766 45578999
Q ss_pred HHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHh
Q 001749 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV 511 (1018)
Q Consensus 459 ~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 511 (1018)
.-+++-+...+....+.+|..++.-+..++..+++.|..+...+++.+..++.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887777665555554443
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=0.34 Score=56.66 Aligned_cols=237 Identities=17% Similarity=0.205 Sum_probs=139.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc
Q 001749 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (1018)
Q Consensus 159 ~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 238 (1018)
.-+|++++.|-+ ..=|.-|+..|++++...+--.....--.++|.+++. +++.-.+.+..-.=+|.++....+
T Consensus 472 eQLPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL----LQS~a~ELrpiLVFIWAKILAvD~ 544 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL----LQSSARELRPILVFIWAKILAVDP 544 (1387)
T ss_pred HhcchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH----hccchHhhhhhHHHHHHHHHhcCc
Confidence 344555555543 2336678888888887654211122223578888886 455555665555556666665443
Q ss_pred cchhHhHHH-HHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHH
Q 001749 239 PLLGDSVKS-IVHFSLEVSSS-HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPD 316 (1018)
Q Consensus 239 ~~~~~~~~~-li~~l~~~~~~-~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~ 316 (1018)
.--...+.+ .-.++++++.. ...+++-|..|.=+|..++...+. -++.-+-..++..++..|.+. .++-.|
T Consensus 545 SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l-GQ~acl~~~li~iCle~lnd~------~~pLLr 617 (1387)
T KOG1517|consen 545 SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL-GQKACLNGNLIGICLEHLNDD------PEPLLR 617 (1387)
T ss_pred hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch-hHHHhccccHHHHHHHHhcCC------ccHHHH
Confidence 322222211 00111122222 445666677776677777765432 122113345666677766543 235667
Q ss_pred HHHHHHHHHHHHHcch-hc---hHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHH----------------HhH
Q 001749 317 RAAAEVIDTMALNLAK-HV---FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK----------------EKL 376 (1018)
Q Consensus 317 ~~a~~~l~~l~~~~~~-~~---~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~----------------~~l 376 (1018)
.-..-||++|=+.+.. .. -....+.+...+.++-+.+|.||++|||.+..+..+.+. ...
T Consensus 618 QW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~ 697 (1387)
T KOG1517|consen 618 QWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSI 697 (1387)
T ss_pred HHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhH
Confidence 7788899988776651 11 123445555668889999999999999999886421110 113
Q ss_pred HHHHH----HHHhhcCCCChhHHHHHHHHHHHhHhhc
Q 001749 377 ESVLH----IVLGALRDPEQFVRGAASFALGQFAEYL 409 (1018)
Q Consensus 377 ~~l~~----~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 409 (1018)
+.++. .++..++|..+.||.....++..++...
T Consensus 698 E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 698 EDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 33333 5667788999999999888888877543
No 207
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.87 E-value=0.92 Score=50.21 Aligned_cols=302 Identities=10% Similarity=0.089 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHhC--CcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHh
Q 001749 706 VVAQACTSIVEIINDYG--YMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSM 783 (1018)
Q Consensus 706 ~~~~~~~~l~~~i~~~g--~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 783 (1018)
..+.++..+.+.++..+ .....+....+++.+...+-+..+......-+.+|++.-.+..+.=+..+-+++..+....
T Consensus 42 ~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~lP~~~~~~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~ 121 (409)
T PF01603_consen 42 IKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPLPPIPNPSFDPDDDEPFLEPSWPHLQLVYEILLRFIESP 121 (409)
T ss_dssp SHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-----SS--S-GGG------TTHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCCCCcccccCCccccccccccccHhHHHHHHHHHHHHHCc
Confidence 34455555555555544 2223456777777777666654332221111111111122333433445555555555432
Q ss_pred CC-ChHHHHHH-HHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcC-CCChHHHHHHHHHHH
Q 001749 784 GP-HFAPIFAK-LFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA-SPDAMNRRNAAFCVG 860 (1018)
Q Consensus 784 ~~-~~~~~~~~-l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a~~~lg 860 (1018)
.. .++.+++. ++-.++..+.+..+ .+|...-.++..+.........-....+...+.+.+. +..+.........+|
T Consensus 122 ~~~~~~~~i~~~fi~~Ll~l~~S~D~-rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~ 200 (409)
T PF01603_consen 122 PFDPAKKYIDQKFIKKLLELFDSPDP-RERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILG 200 (409)
T ss_dssp T--CCTTTS-HHHHHHHHHTTTSSTH-HHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHH
T ss_pred cccHHHHHcCHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHH
Confidence 21 12235654 77778888887655 5588877777777665443333333444445555544 344455555666777
Q ss_pred HHHhhcCcchhhHHHH-HHHhhhhccCCCCCCchhHhHHHH---------------HHHHHHHhCCCCCChh--hHHHH-
Q 001749 861 ELCKNGGESALKYYGD-ILRGLYPLFGDSEPDDAVRDNAAG---------------AVARMIMVNPQSIPLN--QVLPV- 921 (1018)
Q Consensus 861 ~l~~~~~~~~~~~~~~-il~~L~~~l~~~~~~~~~~~na~~---------------al~~l~~~~~~~~~~~--~~l~~- 921 (1018)
.++......+.+-... +...|.++...+. -......... .+-.|+++-|..-+.. -++..
T Consensus 201 sii~gf~~plk~eh~~fl~~vllPLh~~~~-~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el 279 (409)
T PF01603_consen 201 SIINGFAVPLKEEHKQFLRKVLLPLHKSPH-LSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNEL 279 (409)
T ss_dssp HHHTT--SS--HHHHHHHHHTTGGGGGSTG-GGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHH
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHH
Confidence 7766433222222222 3355556654321 1111222233 3344445545443211 12222
Q ss_pred --HHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhh-----------------hhhhHHHHHHHHHhcCCCC---ChHHHH
Q 001749 922 --LLKVLPLKEDFEESMAVYNCISTLVLSSNPQIL-----------------SLVPELVNLFAEVVVSPEE---SSEVKS 979 (1018)
Q Consensus 922 --~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~-----------------~~~~~il~~~~~~~~~~~~---~~~~~~ 979 (1018)
++..+|..+-.......++.++..+.+.|-.|. ++...++.++...+..... +..++.
T Consensus 280 ~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~ 359 (409)
T PF01603_consen 280 EEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRN 359 (409)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 233333222223334566777777766665442 3455566777766654222 467999
Q ss_pred HHHHHHHHHHHHhHhhHHHHHhcCCHHHHH
Q 001749 980 QVGMAFSHLISLYGQQMQPLLSNLSPAHAT 1009 (1018)
Q Consensus 980 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 1009 (1018)
...++++.+.+-.|+.|+++..++..+.++
T Consensus 360 ~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~ 389 (409)
T PF01603_consen 360 LAQNVLKILMEMDPKLFDKCAQKYKEKEQK 389 (409)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999999988888888877666555443
No 208
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.72 E-value=1.4 Score=43.52 Aligned_cols=67 Identities=21% Similarity=0.123 Sum_probs=42.2
Q ss_pred HHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccC
Q 001749 502 VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDG 580 (1018)
Q Consensus 502 i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 580 (1018)
-+|.|.+.+...+ +..-+|..|.+++|.++. +..++.+.+.++++.+-+++.+..++...-..-|+.
T Consensus 219 ai~~L~k~L~d~~-E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~ 285 (289)
T KOG0567|consen 219 AIPSLIKVLLDET-EHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKE 285 (289)
T ss_pred hhHHHHHHHHhhh-cchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 3566666665442 333478888888888763 455666666677777778887766665544333333
No 209
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.56 E-value=0.67 Score=50.65 Aligned_cols=164 Identities=10% Similarity=0.146 Sum_probs=103.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC--------CChhHHHHHHHHHHHhHhh
Q 001749 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD--------PEQFVRGAASFALGQFAEY 408 (1018)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d--------~~~~Vr~~a~~~l~~l~~~ 408 (1018)
..+..+.+.+-+.+...|..|+..|..= +-+..++|.+...+.+ .|...-...+..+..+...
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~TD---------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLETD---------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccC---------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 3455556666678889999998877431 2234445544444432 2333333344444444444
Q ss_pred cCHHHHHhhhhHHHHHHHhccC----------CChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC--CHhH
Q 001749 409 LQPEIVSHYESVLPCILNALED----------ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS--PRNL 476 (1018)
Q Consensus 409 ~~~~~~~~~~~~l~~l~~~l~~----------~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~v 476 (1018)
-.-.+.+|+..++|.++.++-. ..+.+|.-|+..+..+|+.+++......+.+...+.+.|.++ ....
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st 357 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLST 357 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchh
Confidence 3334568999999999988743 346699999999999999998766666678899999988876 4566
Q ss_pred HHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHH
Q 001749 477 QETCMSAIGSVAAAAEQ-AFIPYAERVLELLKIF 509 (1018)
Q Consensus 477 r~~al~al~~l~~~~~~-~~~~~~~~i~~~l~~~ 509 (1018)
...++..+..+....-. -+.|.+......+...
T Consensus 358 ~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~ 391 (576)
T KOG2549|consen 358 HYGAIAGLSELGHEVIRTVILPNLKEYNERLQSV 391 (576)
T ss_pred hhhHHHHHHHhhhhhhhheeccchHHHHHHhhhh
Confidence 77777777766554332 2334444444334333
No 210
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=9.8 Score=47.59 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccC
Q 001749 435 VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTN 514 (1018)
Q Consensus 435 v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 514 (1018)
|-.....+++++....+++ +.++...++....++..+.|-.|+..+..+....|+...+.+++.+|++.++++..+
T Consensus 1520 v~~~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~ 1595 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDED 1595 (1621)
T ss_pred HHHHHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhH
Confidence 5555556666655555554 444555555556677889999999999999999999999999999999999987653
Q ss_pred chhhhhHHHHHHHHHHHHHhhhh
Q 001749 515 DEDLRSRARATELLGLVAESVGR 537 (1018)
Q Consensus 515 ~~~~~~r~~a~~~l~~l~~~~g~ 537 (1018)
++ +...+-..+..+-..+|.
T Consensus 1596 ~~---Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1596 DE---VECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HH---HHHHHHHHHHHHHHHhch
Confidence 32 333344444444445553
No 211
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.49 E-value=0.14 Score=54.84 Aligned_cols=142 Identities=12% Similarity=0.142 Sum_probs=91.5
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHhHhhc
Q 001749 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP-------EQFVRGAASFALGQFAEYL 409 (1018)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~-------~~~Vr~~a~~~l~~l~~~~ 409 (1018)
..+..+.+.+.+.+...|..|+..+..= +.+.+++|.++..+.+. +..+-...+..+..+...-
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~tD---------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRTD---------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccC---------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 3455555566667777888877665321 22334444444433221 4444445555666665554
Q ss_pred CHHHHHhhhhHHHHHHHhcc----------CCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCC--HhHH
Q 001749 410 QPEIVSHYESVLPCILNALE----------DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP--RNLQ 477 (1018)
Q Consensus 410 ~~~~~~~~~~~l~~l~~~l~----------~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~vr 477 (1018)
.-.+.+|+.+++|.++.++- +..+.+|..|+..++.+|+.++..-....+.++..+.+.+.++. ...+
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~ 328 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTH 328 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchh
Confidence 44567899999999998883 23367999999999999999987665566788888888887653 3335
Q ss_pred HHHHHHHHHH
Q 001749 478 ETCMSAIGSV 487 (1018)
Q Consensus 478 ~~al~al~~l 487 (1018)
-.|+..++.+
T Consensus 329 YGAi~GL~~l 338 (343)
T cd08050 329 YGAIVGLSAL 338 (343)
T ss_pred hHHHHHHHHh
Confidence 5666555544
No 212
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.49 E-value=0.9 Score=48.52 Aligned_cols=195 Identities=15% Similarity=0.220 Sum_probs=108.5
Q ss_pred CcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcc------CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 001749 35 QVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK------LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIA 107 (1018)
Q Consensus 35 ~~~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~------l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~ 107 (1018)
.+...++.++... +++.+.++...++-..+...-.. +........-..+++.+.+ ++..+...++.+++.++
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 4566666666654 78899999999998877543211 1110111134556665554 79999999999999998
Q ss_pred cccCCCCCcc---chHHHHHHhhcC----CChHHHHHHHHHHHHhhhhhh--ccccccHHHHHHHHHHhc------CCCC
Q 001749 108 KYAVPAGEWP---DLLPFLFQFSQS----EQEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCL------QDET 172 (1018)
Q Consensus 108 ~~~~~~~~w~---~ll~~l~~~~~s----~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l------~d~~ 172 (1018)
...... .-. ++++.+++++.+ ++.+....++.++..+...-. ..+.. ...++.+...+ ....
T Consensus 134 ~~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 134 SQGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp TSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH---------
T ss_pred HcCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCCCC
Confidence 765432 233 678888888765 333455888899998874322 22211 44555555555 2323
Q ss_pred CHHHHHHHHHHHHHhhcccCChhhHHHH--HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc
Q 001749 173 SNRVRIAALKAIGSFLEFTNDGAEVVKF--REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (1018)
Q Consensus 173 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 239 (1018)
+.++...++-|+ .+++|.++- ...+ ..++|.+++++... ..+.+.+-++.+|.++++..+.
T Consensus 211 ~~Ql~Y~~ll~l-WlLSF~~~~--~~~~~~~~~i~~L~~i~~~~---~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 211 GIQLQYQALLCL-WLLSFEPEI--AEELNKKYLIPLLADILKDS---IKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHHHHHHHH-HHHTTSHHH--HHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSST
T ss_pred chhHHHHHHHHH-HHHhcCHHH--HHHHhccchHHHHHHHHHhc---ccchHHHHHHHHHHHHHhccHH
Confidence 556666665554 233443221 1122 34778888776544 4678888899999999987765
No 213
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.37 E-value=0.16 Score=42.10 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=66.5
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhh
Q 001749 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (1018)
Q Consensus 340 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (1018)
+.....+.|+....|-.|+..+..+.+... ......+.++..++..++|+++.|=-.|..++..++...+. .
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-------~ 77 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-------E 77 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------H
Confidence 344456789999999999999999998765 23345788999999999999999999999999999988654 4
Q ss_pred HHHHHHHhccCC
Q 001749 420 VLPCILNALEDE 431 (1018)
Q Consensus 420 ~l~~l~~~l~~~ 431 (1018)
+++.|++...+.
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 566666554443
No 214
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.35 E-value=2.2 Score=42.29 Aligned_cols=114 Identities=21% Similarity=0.325 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccC
Q 001749 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED 430 (1018)
Q Consensus 351 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~ 430 (1018)
--.|+.|++.+..+.. +.-+..+...+.+++...|..+.+++|++-+. .-+|.+.+.|.+
T Consensus 170 l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d 229 (289)
T KOG0567|consen 170 LFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLD 229 (289)
T ss_pred HHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHh
Confidence 3466777777765532 24456777888888999999999999988643 334445555544
Q ss_pred C--ChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc
Q 001749 431 E--SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1018)
Q Consensus 431 ~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~ 494 (1018)
. ++-||..|+.||+.+.. +..++.|.+.+.+..+-||+.+.-++...-...++.
T Consensus 230 ~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~ 285 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKE 285 (289)
T ss_pred hhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 3 35688889999987754 245666777778888888888887777665444433
No 215
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.09 E-value=1.5 Score=50.00 Aligned_cols=135 Identities=13% Similarity=0.210 Sum_probs=89.1
Q ss_pred CccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCCh
Q 001749 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG 194 (1018)
Q Consensus 115 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~ 194 (1018)
.-..++|.|...+++.+....+.++..+..+.+..+-. -.-..++|.+........+..||..++-|++.+++.++.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~--~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~- 462 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP--FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK- 462 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH--HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH-
Confidence 34668888888888888888999999999998877621 222456677766654447888999999999999966632
Q ss_pred hhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCC
Q 001749 195 AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSH 259 (1018)
Q Consensus 195 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~ 259 (1018)
...++.++. +.++++..++.+.....++...++-..+.-..-...++++.++.+...+
T Consensus 463 ------~~v~d~~lp-i~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 463 ------AAVLDELLP-ILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred ------HHhHHHHHH-HHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 123333333 2334666788888888887777765544422223444555555444433
No 216
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.24 Score=53.64 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=87.5
Q ss_pred hhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHH
Q 001749 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPC 423 (1018)
Q Consensus 345 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 423 (1018)
..++.+..+|+||..++|-++-.-++ +++-.+..|. +-|+.||...+.+||-.|...+.. ..+..
T Consensus 560 avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~di 625 (926)
T COG5116 560 AVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDI 625 (926)
T ss_pred ecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHH
Confidence 46788889999999999988754332 2333334443 568999999999999988776542 22333
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCC
Q 001749 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (1018)
Q Consensus 424 l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 473 (1018)
|-..+.|++.-||..|+.+++.+.-.+.+.+.|-...|...+.+++.+.+
T Consensus 626 L~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 626 LEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 33445688888999999999999999999999999999999999887643
No 217
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.07 E-value=6.6 Score=43.00 Aligned_cols=160 Identities=13% Similarity=0.163 Sum_probs=101.6
Q ss_pred CChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhh
Q 001749 390 PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (1018)
Q Consensus 390 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l 469 (1018)
++..+-...+.++.++....+..+..+....+|.++..+-+....+|..|...+..+...++.. ..+...+...+
T Consensus 146 ~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~-----~~~s~~~~~~~ 220 (372)
T PF12231_consen 146 PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN-----KELSKSVLEDL 220 (372)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHh
Confidence 5667778889999999998887777788888888888888888888888766665555444421 11222222222
Q ss_pred cCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhh--cCCChHHH
Q 001749 470 ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRAR--MEPILPPF 547 (1018)
Q Consensus 470 ~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~--~~~~~~~l 547 (1018)
+... .+. .|.+.+.+.+..++...+.. ..+.+..+.+..-+|... -.+++.++
T Consensus 221 ~~~~------------------~~~--~~~~~~~~~L~~mi~~~~~~-----~~a~~iW~~~i~LL~~~~~~~w~~~n~w 275 (372)
T PF12231_consen 221 QRSL------------------ENG--KLIQLYCERLKEMIKSKDEY-----KLAMQIWSVVILLLGSSRLDSWEHLNEW 275 (372)
T ss_pred cccc------------------ccc--cHHHHHHHHHHHHHhCcCCc-----chHHHHHHHHHHHhCCchhhccHhHhHH
Confidence 2210 001 23344444555555432111 134555555555555432 33577788
Q ss_pred HHHHHhccCCCChhHHHHHHHHHHHHHHHccc
Q 001749 548 VEAAISGFGLEFSELREYTHGFFSNIAGVLED 579 (1018)
Q Consensus 548 ~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 579 (1018)
+...-.+++..++.+|..++.+|..+......
T Consensus 276 L~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 276 LKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 88777788988999999999999999985544
No 218
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.03 E-value=2.7 Score=43.98 Aligned_cols=153 Identities=12% Similarity=0.037 Sum_probs=114.5
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHhh--cChHHHHHhHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhcCHHH-HHhh
Q 001749 342 ASVSCQNASPKYREAAVTAIGIISE--GCAEWMKEKLESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEI-VSHY 417 (1018)
Q Consensus 342 l~~~l~~~~~~~r~aal~~l~~l~~--~~~~~~~~~l~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~-~~~~ 417 (1018)
+..+-...+|..--+++.-+..+.+ .......++-..+-..+..+|+-. ...|...|+.+...+.+.++++- ...+
T Consensus 16 L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl 95 (307)
T PF04118_consen 16 LKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDL 95 (307)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhc
Confidence 3334446778887777765555555 222222233334555677777533 45688899999999999888653 4566
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc
Q 001749 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1018)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~ 494 (1018)
.-..+.++..+...+..||-.....+....-..+..+.|.+..++..++..+.++..++.+.++..+..+...+++.
T Consensus 96 ~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 96 PIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 77778888888877778998889999888888888888999999999999999988899999999999998887765
No 219
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.58 Score=49.29 Aligned_cols=129 Identities=15% Similarity=0.177 Sum_probs=106.4
Q ss_pred HhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHH-HHhhhhHH
Q 001749 343 SVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI-VSHYESVL 421 (1018)
Q Consensus 343 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~~~~l 421 (1018)
...+++-+.++|..|+..+..+....+.....++..+++.+.....|.+..||.....++..+.....+.. .+++.-++
T Consensus 64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~ 143 (393)
T KOG2149|consen 64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM 143 (393)
T ss_pred HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence 34478889999999999999888877777777888899999999999999999999999998776655543 56788899
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcC
Q 001749 422 PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN 471 (1018)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 471 (1018)
+.+..++....+.+|.-+...+..+++.+++.+..+...++..+...+..
T Consensus 144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877666555566665555443
No 220
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.63 E-value=0.17 Score=41.89 Aligned_cols=74 Identities=28% Similarity=0.301 Sum_probs=62.7
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccc
Q 001749 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE 453 (1018)
Q Consensus 379 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 453 (1018)
.+...+..+.|+.+-||..++..|.++.+.-. ......+.++..++..+.|+++-|--+|..++..++...++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 35566777899999999999999999998755 123457899999999999999999999999999999987654
No 221
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.57 E-value=2.1 Score=44.76 Aligned_cols=148 Identities=13% Similarity=0.066 Sum_probs=104.4
Q ss_pred ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccc----h--hhHHHHHHHHHHHHh----c-cCchhhh
Q 001749 451 GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF----I--PYAERVLELLKIFMV----L-TNDEDLR 519 (1018)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~----~--~~~~~i~~~l~~~l~----~-~~~~~~~ 519 (1018)
...+..+++-+++.++.++++.+..+|...+.++..+...++... . .+.+.+.+.+...+. . ..++...
T Consensus 110 ~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~ 189 (282)
T PF10521_consen 110 RPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLE 189 (282)
T ss_pred cchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHH
Confidence 345678899999999999999999999999999999998776543 2 123444455555443 1 1234455
Q ss_pred hHHHHHHHHHHHHHhhhhhhcC---CChHHHH-HHHHhccC--C--CChhHHHHHHHHHHHHHHHcccCcccchhhhhHH
Q 001749 520 SRARATELLGLVAESVGRARME---PILPPFV-EAAISGFG--L--EFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPL 591 (1018)
Q Consensus 520 ~r~~a~~~l~~l~~~~g~~~~~---~~~~~l~-~~l~~~l~--~--~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 591 (1018)
+-..++.|+-.+......+.-. .....++ +.++..+. . +.+.++...++.+..+...+|.....|+..++|.
T Consensus 190 Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~ 269 (282)
T PF10521_consen 190 LLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPV 269 (282)
T ss_pred HHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6667788888776653221212 2233333 33555444 1 2588999999999999999999999999999999
Q ss_pred HHhhccC
Q 001749 592 AFSSCNL 598 (1018)
Q Consensus 592 ll~~~~~ 598 (1018)
+.+.+..
T Consensus 270 l~~~l~n 276 (282)
T PF10521_consen 270 LSQILEN 276 (282)
T ss_pred HHHHhcC
Confidence 9987753
No 222
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.54 E-value=0.95 Score=51.20 Aligned_cols=188 Identities=18% Similarity=0.207 Sum_probs=130.6
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHH
Q 001749 248 IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (1018)
Q Consensus 248 li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~ 327 (1018)
+++.+++..+.. |..+|..-+..+..+++.-... .+-.++++.+..-+.+.+ ...|.....++..++
T Consensus 331 i~p~l~kLF~~~--Dr~iR~~LL~~i~~~i~~Lt~~----~~~d~I~phv~~G~~DTn-------~~Lre~Tlksm~~La 397 (690)
T KOG1243|consen 331 IIPVLLKLFKSP--DRQIRLLLLQYIEKYIDHLTKQ----ILNDQIFPHVALGFLDTN-------ATLREQTLKSMAVLA 397 (690)
T ss_pred hhhhHHHHhcCc--chHHHHHHHHhHHHHhhhcCHH----hhcchhHHHHHhhcccCC-------HHHHHHHHHHHHHHH
Confidence 445555555543 6678877766655555432221 233455555554454433 377888889999999
Q ss_pred HHcchhch-HHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001749 328 LNLAKHVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFA 406 (1018)
Q Consensus 328 ~~~~~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 406 (1018)
..++...+ ..++.++...-.+++...|.-...++|.++.......+. ..+.....+.++|+-..-|.++.+.+....
T Consensus 398 ~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 398 PKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred hhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 98885444 567777766666777888888888898888765433222 123345566889999999999999998888
Q ss_pred hhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcc
Q 001749 407 EYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 407 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~ 452 (1018)
+.+.. .+.-.+++|.+....-|++..||..|..++..+.....+
T Consensus 476 ~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 476 EYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred cccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 77642 455678999999888999999999999999988877644
No 223
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.14 Score=48.08 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=77.8
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHh---hc
Q 001749 417 YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA---EQ 493 (1018)
Q Consensus 417 ~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~---~~ 493 (1018)
+...+|.+...|.+.+-.-+--|-..+..++...++.+.|.++.++..|...|.+.+.++...++.+|..++... |.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 446677777777766555666677778888888899999999999999999999999999999999998776554 57
Q ss_pred cchhhHHHHHHHHHHHH
Q 001749 494 AFIPYAERVLELLKIFM 510 (1018)
Q Consensus 494 ~~~~~~~~i~~~l~~~l 510 (1018)
...|||.+++|.+..+-
T Consensus 192 aLVPfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLNTFK 208 (262)
T ss_pred hhhhHHHHhhhhhhhhc
Confidence 89999999999886543
No 224
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=8.6 Score=41.44 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCC
Q 001749 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (1018)
Q Consensus 394 Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 473 (1018)
.-..|++.+-.+++....+..-.-..++..|+++|.-.+...-......|..+.--......---..++..|.+++...+
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 34477888899998876665555678899999999877655444444444433222222222223468999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHhc
Q 001749 474 RNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVL 512 (1018)
Q Consensus 474 ~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~ 512 (1018)
+.++...+..+-.+.--.| ..|-+ ..++|.+..++..
T Consensus 359 ~dL~~~tl~LlfNlSFD~g--lr~KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSG--LRPKMVNGGLLPHLASLLDS 397 (791)
T ss_pred HHHHHHHHHHhhhcccccc--ccHHHhhccchHHHHHHhCC
Confidence 9999988877765543222 22211 2356666666654
No 225
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.41 E-value=2.7 Score=46.24 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=82.1
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccc
Q 001749 374 EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE 453 (1018)
Q Consensus 374 ~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 453 (1018)
..+..++..+++++..++..||..++..+..++...++--...+..++..+.+.+-|..+.||..|..+|..+=+..++.
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 45677888999999999999999999999999988876444567888899999999999999999999998876544321
Q ss_pred cccchHHHHHHHHHhhc-CCCHhHHHHHHHHH
Q 001749 454 ILPFLDPLMGKLLAALE-NSPRNLQETCMSAI 484 (1018)
Q Consensus 454 ~~~~~~~l~~~l~~~l~-~~~~~vr~~al~al 484 (1018)
-..+...+...++ +++..||..|+.-|
T Consensus 167 ----en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 167 ----ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 1234444555554 45778998887654
No 226
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.32 E-value=20 Score=45.14 Aligned_cols=346 Identities=14% Similarity=0.184 Sum_probs=171.3
Q ss_pred hHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHhcCC---ccchhHhHHHHHHHHHHHhcC-CCC-ChHHHHHHHHHHHHH
Q 001749 203 FIPSILNVSRQ-CLASGEEDVAVIAFEIFDELIESP---APLLGDSVKSIVHFSLEVSSS-HNL-EPNTRHQAIQIISWL 276 (1018)
Q Consensus 203 ~~~~ll~~l~~-~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~li~~l~~~~~~-~~~-~~~~r~~a~~~l~~~ 276 (1018)
+.|....++.. ++...|.+++....-|+.++.... .++-...+..++.+++..+.- .|. ++... .-...+.++
T Consensus 46 ~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~-r~~~lletl 124 (1266)
T KOG1525|consen 46 LLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFK-RYFYLLETL 124 (1266)
T ss_pred HHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchh-hHHHHHHHH
Confidence 44433333332 356778888887777888777542 445566777777776644321 111 22221 122334444
Q ss_pred HHHhHHHhhh----cCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc--hhchHHHHHHHHhhhcCCC
Q 001749 277 AKYKYNSLKK----HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNAS 350 (1018)
Q Consensus 277 ~~~~~~~~~~----~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~~ 350 (1018)
+..+.-.+.. ...+..++.+++.+....-. . .....++.+...+. +.+-..++..+...+-++.
T Consensus 125 ~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~---------~-~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~ 194 (1266)
T KOG1525|consen 125 AKVKFCLLMLLEDCQELVHELFRTFFDLARKGHP---------K-KVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPG 194 (1266)
T ss_pred HHhHHHheeeccchHHHHHHHHHHHHHHHhcccc---------H-HHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCC
Confidence 4433211111 12334444444444432210 0 00112222221111 2222233333322233333
Q ss_pred hhHHHHHHHHHHHHhhcChHHHHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhcc
Q 001749 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE 429 (1018)
Q Consensus 351 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~-~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~ 429 (1018)
...+..|...-..+.+.|.+.+.+.+...+. .+...-. .-..++......+-.+-... ...+-.++|.|..-|.
T Consensus 195 ~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~----p~ll~~vip~l~~eL~ 269 (1266)
T KOG1525|consen 195 RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKS-RQSSLKIKYHELILELWRIA----PQLLLAVIPQLEFELL 269 (1266)
T ss_pred CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhh----HHHHHHHHHHHHHHHh
Confidence 3444455544445555555444443333222 2221111 11122222223333332221 2345678888888888
Q ss_pred CCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 001749 430 DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIF 509 (1018)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~ 509 (1018)
..+..+|..|...++.++..-+..+..-.+.++...+.-+.+.+..||..+++....+....++.... ..++-.++.
T Consensus 270 se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~--~~~~~~l~~- 346 (1266)
T KOG1525|consen 270 SEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA--STILLALRE- 346 (1266)
T ss_pred cchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH--HHHHHHHHh-
Confidence 88889999999999999887655555556788888999999999999999998887766553321110 011111111
Q ss_pred HhccCchhhhhHHHHHHHHHHHHHhhhhhhc-CCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHH
Q 001749 510 MVLTNDEDLRSRARATELLGLVAESVGRARM-EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (1018)
Q Consensus 510 l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (1018)
...+++.+.|..++ +..+. ...| -.+.+.++..+.+.+.+....+|..++.-+..+-+
T Consensus 347 --~~~D~~~rir~~v~--i~~~~----v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 347 --RDLDEDVRVRTQVV--IVACD----VMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred --hcCChhhhheeeEE--EEEee----hhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11223333322111 11100 0111 12334477777777777788999998887776655
No 227
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.23 E-value=2.9 Score=44.68 Aligned_cols=166 Identities=13% Similarity=0.155 Sum_probs=93.3
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHH----HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHH
Q 001749 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK----EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (1018)
Q Consensus 339 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~----~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 414 (1018)
-+++. .+.++|+.....|+..++.+....+.... ..++.++..+...++.++..++..|+.+++.+... +...
T Consensus 108 ~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~R 184 (312)
T PF03224_consen 108 SPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEYR 184 (312)
T ss_dssp HHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHHH
T ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chhH
Confidence 33443 67888999999999999999887654333 34555666666655556777889999999999855 3333
Q ss_pred Hhh--hhHHHHHHHhc-----cCCC--hHHHHHHHHHHHHHH--hhhcccc-ccchHHHHHHHHHhhcCC-CHhHHHHHH
Q 001749 415 SHY--ESVLPCILNAL-----EDES--DEVKEKSYYALAAFC--EDMGEEI-LPFLDPLMGKLLAALENS-PRNLQETCM 481 (1018)
Q Consensus 415 ~~~--~~~l~~l~~~l-----~~~~--~~v~~~a~~al~~l~--~~~~~~~-~~~~~~l~~~l~~~l~~~-~~~vr~~al 481 (1018)
..+ ...++.+...+ .+.. ..++..++.++-.+. ...-+.+ ..+ +++.+..+++.. ..+|-.-++
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~l 261 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSL 261 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHH
Confidence 222 55566666666 2222 345566666655432 2221222 233 788888777664 567777777
Q ss_pred HHHHHHHHHhhccchhhH--HHHHHHHHHHH
Q 001749 482 SAIGSVAAAAEQAFIPYA--ERVLELLKIFM 510 (1018)
Q Consensus 482 ~al~~l~~~~~~~~~~~~--~~i~~~l~~~l 510 (1018)
.++-.++....+.+.+-+ ..+.+.+..+.
T Consensus 262 a~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 262 AILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 777777766655433321 33445554443
No 228
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.18 E-value=9.2 Score=40.77 Aligned_cols=143 Identities=11% Similarity=0.196 Sum_probs=100.3
Q ss_pred hHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCC--CccchhhhhHhHHHHHhhcCcchH----hhHHhhHH
Q 001749 765 DEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSR--PLQDRTMVVATLAEVARDMGSPIA----AYVDRVMP 838 (1018)
Q Consensus 765 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~~r~~a~~~l~~~~~~~~~~~~----~~~~~l~~ 838 (1018)
+..++..++.++..+.....+.+...++.++...+.+++++. -+..|..-+..+..+++++.+.+. ..+..++.
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~id 168 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVID 168 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHH
Confidence 345666666666666665566677777777777788887642 256788889999999998866543 35778888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhcCc---c-----hhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHh
Q 001749 839 LVLKELASPDAMNRRNAAFCVGELCKNGGE---S-----ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMV 908 (1018)
Q Consensus 839 ~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~---~-----~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~ 908 (1018)
.+.-++++.+++|...+..++..++..... . +..|+-.+++.+..++.++. ....-+.-+..+.+++..
T Consensus 169 si~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~-Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 169 SIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD-HKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999765432 1 35566667776666665433 344445555667777643
No 229
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=94.16 E-value=18 Score=43.95 Aligned_cols=161 Identities=14% Similarity=0.123 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhh----h
Q 001749 78 LVKQSLIESITLE----HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET----I 149 (1018)
Q Consensus 78 ~i~~~Ll~~l~~e----~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~----~ 149 (1018)
.+.-.++++|... .++.+|...-.++..+...... ..+++++|-+..++-++++..|.-|...+..+-.. .
T Consensus 77 ~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t 155 (727)
T PF12726_consen 77 ALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSIT 155 (727)
T ss_pred hHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCc
Confidence 4555667777643 3555777777777777654322 13378899999999889999999999999988653 2
Q ss_pred hcccccc-HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHhhcccCChhhHHHHHh--hHHHHHHHHHHHhhcCCHHHHHH
Q 001749 150 GQTFRPH-FADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTNDGAEVVKFRE--FIPSILNVSRQCLASGEEDVAVI 225 (1018)
Q Consensus 150 ~~~~~~~-~~~l~~~l~~~l~d~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~~~ 225 (1018)
.+.+... .+.+...+... +.. .++..-..-=..+..++...+.......+.. +-| +...+...+.....+....
T Consensus 156 ~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~ 233 (727)
T PF12726_consen 156 DEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPI 233 (727)
T ss_pred hhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHH
Confidence 3344322 23344444433 221 1222111111233344455543322333333 444 6666655666554555666
Q ss_pred HHHHHHHHhcCCccch
Q 001749 226 AFEIFDELIESPAPLL 241 (1018)
Q Consensus 226 a~~~l~~l~~~~~~~~ 241 (1018)
.+++|..+.+..+.-|
T Consensus 234 lL~~l~~lL~k~~~~F 249 (727)
T PF12726_consen 234 LLRCLSILLEKLGSDF 249 (727)
T ss_pred HHHHHHHHHHhCHHHH
Confidence 7778887776554433
No 230
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.06 E-value=0.39 Score=51.52 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=90.5
Q ss_pred HHHHHHHHHcc-hhchHHHHHHHHhhhc--CC-ChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc---------
Q 001749 321 EVIDTMALNLA-KHVFPPVFEFASVSCQ--NA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL--------- 387 (1018)
Q Consensus 321 ~~l~~l~~~~~-~~~~~~~~~~l~~~l~--~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l--------- 387 (1018)
.+|..|...-| ..++|.+..++.+... .. ++..-...+.++.++..+..=.+.+|+..++|.++.++
T Consensus 197 ~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~ 276 (343)
T cd08050 197 EALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRP 276 (343)
T ss_pred HHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCC
Confidence 45666666666 6677777777765542 12 56666777778888887766677889999999888876
Q ss_pred -CCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChH--HHHHHHHHHHHH
Q 001749 388 -RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE--VKEKSYYALAAF 446 (1018)
Q Consensus 388 -~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~--v~~~a~~al~~l 446 (1018)
.+.++.+|.-|+.+++.++..++.......+.++..+.+.+.|+... ....|...|..|
T Consensus 277 ~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 277 PDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 34678999999999999999887654445567777888888877533 345566555544
No 231
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.97 E-value=0.27 Score=45.69 Aligned_cols=96 Identities=22% Similarity=0.243 Sum_probs=74.5
Q ss_pred HHhHHHHHHHHHhhcC------------------CCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChH
Q 001749 373 KEKLESVLHIVLGALR------------------DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE 434 (1018)
Q Consensus 373 ~~~l~~l~~~l~~~l~------------------d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 434 (1018)
.++++.++|.+..-.. |.-..+|.+|..++..+.+.+...+ .+..+++.+..+|.| +..
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~D 80 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHD 80 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHH
Confidence 3567778887775432 4457899999999999988765433 256778999999999 789
Q ss_pred HHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcC
Q 001749 435 VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN 471 (1018)
Q Consensus 435 v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 471 (1018)
++.-++..+..++...+..+.+.++.+++.+-..++.
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999888888888888888888754
No 232
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.95 E-value=2.5 Score=46.40 Aligned_cols=151 Identities=14% Similarity=0.158 Sum_probs=100.0
Q ss_pred HHHHHHHHHcc-hhchHHHHHHHHhhhcC----CChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc--------
Q 001749 321 EVIDTMALNLA-KHVFPPVFEFASVSCQN----ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-------- 387 (1018)
Q Consensus 321 ~~l~~l~~~~~-~~~~~~~~~~l~~~l~~----~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l-------- 387 (1018)
.+|..|...-| ..++|.+..++.+...- .+-..-...+....++..+..=.+.+|+..++|.++.|+
T Consensus 226 eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~ 305 (576)
T KOG2549|consen 226 EALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLR 305 (576)
T ss_pred HHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCC
Confidence 34444444455 55667776666554422 233334444556666666655567789999999888875
Q ss_pred --CCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCC--hHHHHHHHHHHHHHHhhh-ccccccchHHHH
Q 001749 388 --RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDM-GEEILPFLDPLM 462 (1018)
Q Consensus 388 --~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~-~~~~~~~~~~l~ 462 (1018)
.|.++.+|.-|+..+..++..++......-..++..+.+.+.|+. ......+...|..|-... ...+.|.+....
T Consensus 306 p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~ 385 (576)
T KOG2549|consen 306 PELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYN 385 (576)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHH
Confidence 267899999999999999999877655666788888888888874 234556667777665544 333456666666
Q ss_pred HHHHHhhcC
Q 001749 463 GKLLAALEN 471 (1018)
Q Consensus 463 ~~l~~~l~~ 471 (1018)
..+...+..
T Consensus 386 ~~l~~~l~~ 394 (576)
T KOG2549|consen 386 ERLQSVLDV 394 (576)
T ss_pred HHhhhhccc
Confidence 666555443
No 233
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.74 E-value=2 Score=42.92 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCC------hHHHHHHHHHHHHHHh
Q 001749 375 KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES------DEVKEKSYYALAAFCE 448 (1018)
Q Consensus 375 ~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~------~~v~~~a~~al~~l~~ 448 (1018)
++++++..+ +...+...|.+|+.++..= +-+.+++|.++..+.+.- ..+-.........+.+
T Consensus 198 YF~kvisal---~dEs~~~~r~aAl~sLr~d---------sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~ 265 (450)
T COG5095 198 YFDKVISAL---LDESDEQTRDAALESLRND---------SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLK 265 (450)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhccC---------ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Confidence 344444433 3455778888888766431 233455555555444321 1122222223333333
Q ss_pred hhccccccchHHHHHHHHHhhcC-----CC-----HhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhh
Q 001749 449 DMGEEILPFLDPLMGKLLAALEN-----SP-----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDL 518 (1018)
Q Consensus 449 ~~~~~~~~~~~~l~~~l~~~l~~-----~~-----~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 518 (1018)
+-.-.+.||+..+|+.++.++-. .+ ..+|..|...++.+.+..+......-+.+...+.+.+-..+ ...
T Consensus 266 N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~-k~~ 344 (450)
T COG5095 266 NKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE-KTE 344 (450)
T ss_pred CCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc-ccc
Confidence 33334679999999999988632 11 23788888888777776665544444555554444433221 111
Q ss_pred hhHHHHHHHHHHHHHh
Q 001749 519 RSRARATELLGLVAES 534 (1018)
Q Consensus 519 ~~r~~a~~~l~~l~~~ 534 (1018)
...-.|+.+++.+...
T Consensus 345 sT~YGalkgls~l~ke 360 (450)
T COG5095 345 STQYGALKGLSILSKE 360 (450)
T ss_pred chhhhhhhhhhhhchh
Confidence 2223466666666543
No 234
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.61 E-value=7.1 Score=43.63 Aligned_cols=195 Identities=15% Similarity=0.204 Sum_probs=115.6
Q ss_pred cHHHHHHHHHHHHHHHcchhchHHHHH-HHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHh-HHHHHHHHHhhcCCCC
Q 001749 314 APDRAAAEVIDTMALNLAKHVFPPVFE-FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLGALRDPE 391 (1018)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~-~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-l~~l~~~l~~~l~d~~ 391 (1018)
..|-.|..+|+.+....+...+..++. .+..+++++..-.|..|...+...+.......... .+.+.+.+...|.++.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~ 181 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPE 181 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCC
Confidence 456778999999999988666666665 68888999999999999999988887654211110 2344445555555332
Q ss_pred -----------hhHHHHHHHHHHHhHhhcC--------------------H------HHHHhhhhHHHHHHHhccCCCh-
Q 001749 392 -----------QFVRGAASFALGQFAEYLQ--------------------P------EIVSHYESVLPCILNALEDESD- 433 (1018)
Q Consensus 392 -----------~~Vr~~a~~~l~~l~~~~~--------------------~------~~~~~~~~~l~~l~~~l~~~~~- 433 (1018)
.++|..+-..+..+..... + ..........+.+.+.+.....
T Consensus 182 ~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~ 261 (441)
T PF12054_consen 182 PPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKL 261 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 3567777666666654432 0 0111223333444444432210
Q ss_pred -----------------------------HHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC-CHhHHHHHHHH
Q 001749 434 -----------------------------EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSA 483 (1018)
Q Consensus 434 -----------------------------~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~a 483 (1018)
+|+..++.|+..+ ...++. +.+++..|+.-++.. +..++..+..+
T Consensus 262 ~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l-~~lP~K----LnPiIrpLMdSIK~Een~~LQ~rsA~s 336 (441)
T PF12054_consen 262 SALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVAL-GGLPKK----LNPIIRPLMDSIKREENELLQQRSAES 336 (441)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCC----ccHHHHHHHHHhhccccHHHHHHHHHH
Confidence 1111111111111 222344 455556666556554 68899999999
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHhcc
Q 001749 484 IGSVAAAAEQAFIPYAERVLELLKIFMVLT 513 (1018)
Q Consensus 484 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 513 (1018)
|+.++..+...-..--+.++.-|..++..+
T Consensus 337 lA~Li~~~~~rkp~PndKIvkNLc~flC~D 366 (441)
T PF12054_consen 337 LARLIQLCVDRKPCPNDKIVKNLCTFLCVD 366 (441)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHhhhhccC
Confidence 999998887443334477777777777544
No 235
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.58 E-value=0.72 Score=42.96 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=89.9
Q ss_pred hhhHHHHHHHhhhhccCCC----------------CCCchhHhHHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHH
Q 001749 870 ALKYYGDILRGLYPLFGDS----------------EPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFE 933 (1018)
Q Consensus 870 ~~~~~~~il~~L~~~l~~~----------------~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~ 933 (1018)
+.|+++.+++.|+.-..-. ++--.+|..|..|+..++......+++..++..+...|. ++.+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~--D~~D 80 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLK--DEHD 80 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTS--S-HH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcC--CcHH
Confidence 3567778888776544321 112368999999999999988888888888888888874 4566
Q ss_pred hhHHHHHHHHHHHhhcChhhhhhhhHHHHHHHHHhcCCCC----------ChHHHHHHHHHHHHHHHHhH------hhHH
Q 001749 934 ESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEE----------SSEVKSQVGMAFSHLISLYG------QQMQ 997 (1018)
Q Consensus 934 e~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~------~~~~ 997 (1018)
...-++..+.+++...+..+..++..++..+...+..+.- .+|..+.+++++..+....| ..|.
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~ 160 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWN 160 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHH
Confidence 6677888888888766666788899999988888854321 24677778888888855443 3677
Q ss_pred HHHhc
Q 001749 998 PLLSN 1002 (1018)
Q Consensus 998 ~~~~~ 1002 (1018)
++|..
T Consensus 161 ~f~~~ 165 (169)
T PF08623_consen 161 EFVEW 165 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 236
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.54 E-value=5.5 Score=46.95 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHc--c-hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhh-cChHH-------HHHhHHHHHHHHHhhc
Q 001749 319 AAEVIDTMALNL--A-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE-GCAEW-------MKEKLESVLHIVLGAL 387 (1018)
Q Consensus 319 a~~~l~~l~~~~--~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~-~~~~~-------~~~~l~~l~~~l~~~l 387 (1018)
+.+.+..+.... + ..++..+++++..--..+....|.+++.+++.+.. .|... ...+++.+...+-.+.
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 344444444332 2 55555555554432233466789999999999987 33211 1223334444444455
Q ss_pred CCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHH
Q 001749 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLA 467 (1018)
Q Consensus 388 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~ 467 (1018)
...+...+..++.+||++.... ...++..+++ .-...+..+|..|++||..+....++. +-+.++.
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~~---~i~~l~~~l~----~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~ 521 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHPS---SIKVLEPYLE----GAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLP 521 (574)
T ss_pred hcCCchheeeHHHhhhccCChh---HHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHH
Confidence 5566677788899999886531 1122222221 112335679999999999888766554 3344555
Q ss_pred hhcCC--CHhHHHHHHHHH
Q 001749 468 ALENS--PRNLQETCMSAI 484 (1018)
Q Consensus 468 ~l~~~--~~~vr~~al~al 484 (1018)
++.+. +.++|..|+..+
T Consensus 522 i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 522 IYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHcCCCCChHHHHHHHHHH
Confidence 55443 678998887655
No 237
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.45 E-value=1.9 Score=43.04 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhc-C-CChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc----
Q 001749 315 PDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQ-N-ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL---- 387 (1018)
Q Consensus 315 ~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~-~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l---- 387 (1018)
.|.+|..+| -..-| .+.+|.++.++.+.+. + .+-..-...+....++..+..-...+++.+++|.++.++
T Consensus 214 ~r~aAl~sL---r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakk 290 (450)
T COG5095 214 TRDAALESL---RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKK 290 (450)
T ss_pred HHHHHHHHh---ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHH
Confidence 344444443 33344 5566777776654432 1 233334445566666666655455677788888777664
Q ss_pred -C-CC----ChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCCh--HHHHHHHHHHHHHHhhh
Q 001749 388 -R-DP----EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD--EVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 388 -~-d~----~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~v~~~a~~al~~l~~~~ 450 (1018)
. ++ +-.+|.-|+..++..+..++......-+.+...+++.+.|.+. ..+..|...+..+-...
T Consensus 291 lg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ 361 (450)
T COG5095 291 LGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEV 361 (450)
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhh
Confidence 2 22 3469999999999999998766555567788888887777642 24566777777665544
No 238
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.41 E-value=13 Score=39.78 Aligned_cols=310 Identities=14% Similarity=0.133 Sum_probs=144.5
Q ss_pred CccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccc-cHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCC
Q 001749 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP-HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (1018)
Q Consensus 115 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~ 193 (1018)
.|..+++. +...++-..+.+..+++.++......+.. ..+-....+...++...+...+..|++|+..++...+-
T Consensus 115 ~~~~fl~l----l~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ey 190 (442)
T KOG2759|consen 115 EWLSFLNL----LNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEY 190 (442)
T ss_pred chHHHHHH----HhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcch
Confidence 46555444 44566777777889999888665544433 33344455555565535666778888999888765431
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHH--HHHHHHHHHhcCCCCChHHHHHHHH
Q 001749 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK--SIVHFSLEVSSSHNLEPNTRHQAIQ 271 (1018)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~li~~l~~~~~~~~~~~~~r~~a~~ 271 (1018)
...... .+-+..++..+. -+..+.......+-|+..+.- .+..- .+++ .+++.+.++++.. ..+.|-+.++.
T Consensus 191 R~~~v~-adg~~~l~~~l~--s~~~~~QlQYqsifciWlLtF-n~~~a-e~~~~~~li~~L~~Ivk~~-~KEKV~Rivla 264 (442)
T KOG2759|consen 191 RYAFVI-ADGVSLLIRILA--STKCGFQLQYQSIFCIWLLTF-NPHAA-EKLKRFDLIQDLSDIVKES-TKEKVTRIVLA 264 (442)
T ss_pred hheeee-cCcchhhHHHHh--ccCcchhHHHHHHHHHHHhhc-CHHHH-HHHhhccHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 100000 001112222211 011233444444444443331 11111 1111 2445555555433 23345555566
Q ss_pred HHHHHHHHhHH-HhhhcCChHHH---HHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcch--hchHHHHHHHHhh
Q 001749 272 IISWLAKYKYN-SLKKHKLVIPI---LQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK--HVFPPVFEFASVS 345 (1018)
Q Consensus 272 ~l~~~~~~~~~-~~~~~~~~~~i---~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~~ 345 (1018)
.+.++++..+. ..++.-...-+ ++..+..|.+..=+|+ | . ..-+..+.+.+.+ +-+..+=.+..+.
T Consensus 265 i~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDE--D--L----~~di~~L~e~L~~svq~LsSFDeY~sEl 336 (442)
T KOG2759|consen 265 IFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDE--D--L----VDDIEFLTEKLKNSVQDLSSFDEYKSEL 336 (442)
T ss_pred HHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcH--H--H----HHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 66666665432 11110001111 1122233333211111 1 1 1222333322221 1111111111111
Q ss_pred hc---CCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhcCHHHHHhhh--h
Q 001749 346 CQ---NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEIVSHYE--S 419 (1018)
Q Consensus 346 l~---~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~ 419 (1018)
.. .-++..+..-.+- ++. +.+...--+++..++..|... +|.+-..||.=+|.+..+.+.. ...+. +
T Consensus 337 ~sG~L~WSP~Hk~e~FW~-----eNa-~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-k~vv~k~g 409 (442)
T KOG2759|consen 337 RSGRLEWSPVHKSEKFWR-----ENA-DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-KAVVEKYG 409 (442)
T ss_pred HhCCcCCCccccccchHH-----HhH-HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-hHHHHHhc
Confidence 11 0111111111100 000 111122226777888888744 5888899999999999988542 22221 2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 001749 420 VLPCILNALEDESDEVKEKSYYALAAFCED 449 (1018)
Q Consensus 420 ~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (1018)
.=..+++.++.++++||.+|..|+..++-+
T Consensus 410 gKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 410 GKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 345677888999999999999999887643
No 239
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.22 E-value=14 Score=39.55 Aligned_cols=260 Identities=13% Similarity=0.113 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHH------hHHHhhhcCChH
Q 001749 219 EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSS-HNLEPNTRHQAIQIISWLAKY------KYNSLKKHKLVI 291 (1018)
Q Consensus 219 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~-~~~~~~~r~~a~~~l~~~~~~------~~~~~~~~~~~~ 291 (1018)
+++.+.-++++|...++...-.+.-.-..++...+++..+ ++.. -+..++..+...++. ....+++..--+
T Consensus 237 ~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t--~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p 314 (604)
T KOG4500|consen 237 REDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFT--KKTDMLNLFKRIAELDVLLLTGDESMQKLHADP 314 (604)
T ss_pred ccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhccccc--chHHHHHHHHhhhhHhhhhhcCchHHHHHhcCc
Confidence 4567777888888888765322211111133333333333 1111 122222222222221 111122211123
Q ss_pred HHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-------hhchHHHHHHHHh-hhcCCChhHHHHHHHHHHH
Q 001749 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-------KHVFPPVFEFASV-SCQNASPKYREAAVTAIGI 363 (1018)
Q Consensus 292 ~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-------~~~~~~~~~~l~~-~l~~~~~~~r~aal~~l~~ 363 (1018)
.++..+..|+... +......+.-+++.+++.-. ++++..++..+.+ .--+.+.+..+|++.++..
T Consensus 315 ~~l~~~~sw~~S~-------d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRn 387 (604)
T KOG4500|consen 315 QFLDFLESWFRSD-------DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRN 387 (604)
T ss_pred HHHHHHHHHhcCC-------chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHh
Confidence 3555566565432 23455666777777765433 3344555555433 3446778888999999988
Q ss_pred HhhcChH--HHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHH-H--hhhhHHHHHHHhccCCChH-HHH
Q 001749 364 ISEGCAE--WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV-S--HYESVLPCILNALEDESDE-VKE 437 (1018)
Q Consensus 364 l~~~~~~--~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~--~~~~~l~~l~~~l~~~~~~-v~~ 437 (1018)
++--.+. .+.+ .-+.+.++..++-..|.|..--+..+..+.... +.+. + --+.++..|+.--+.++-. |..
T Consensus 388 l~IPv~nka~~~~--aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~g 464 (604)
T KOG4500|consen 388 LMIPVSNKAHFAP--AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAG 464 (604)
T ss_pred ccccCCchhhccc--cchHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhh
Confidence 7754322 1111 235667788888888888765555554443322 2121 1 1234555555544555433 666
Q ss_pred HHHHHHHHHHhhh--ccccc--cchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHh
Q 001749 438 KSYYALAAFCEDM--GEEIL--PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (1018)
Q Consensus 438 ~a~~al~~l~~~~--~~~~~--~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~ 491 (1018)
.+...+..++++. ++.+. |-- ..+..++..+...+...+..++-++..+....
T Consensus 465 ESnRll~~lIkHs~~kdv~~tvpks-g~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 465 ESNRLLLGLIKHSKYKDVILTVPKS-GGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred hhhHHHHHHHHhhHhhhhHhhcccc-ccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 7777787788774 22211 211 24666777777777888888888887776543
No 240
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=31 Score=43.53 Aligned_cols=175 Identities=10% Similarity=0.073 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHhHhhc-CHHHHHhhhhHHHHHHHh-ccCCChHHHHHHHHHHHHHHhhh--ccccccchHHHHHHHHH
Q 001749 392 QFVRGAASFALGQFAEYL-QPEIVSHYESVLPCILNA-LEDESDEVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLA 467 (1018)
Q Consensus 392 ~~Vr~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~~-l~~~~~~v~~~a~~al~~l~~~~--~~~~~~~~~~l~~~l~~ 467 (1018)
+.-...++.+.+.++... ++.. .+.++..+... ..+..+++|.++...+..++-.- + ......++|-..+..
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~~~l---~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s 1576 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIGHHL---QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLES 1576 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccchhh---HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHH
Confidence 334445555555554332 3222 23444444432 33456789988888887765432 3 344667788899999
Q ss_pred hhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHH
Q 001749 468 ALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPF 547 (1018)
Q Consensus 468 ~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l 547 (1018)
.+++.+..+|+.|..+++.+.......+.+ ............. ..+......++..+|.++-++. -.+|..
T Consensus 1577 ~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~-s~~~i~~HgavlgLgA~VlafP-----y~vP~w 1647 (1710)
T KOG1851|consen 1577 LLNDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSK-SKDEIKAHGAVLGLGAIVLAFP-----YVVPLW 1647 (1710)
T ss_pred HHcchHHHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhhhhc-chHHHHhhhhHHHHHHHHHhcc-----ccchhh
Confidence 999998999999999999998887666555 1111111111111 1222334456666777765552 123444
Q ss_pred HHHHHhccC---CCChhHHHHHHHHHHHHHHHccc
Q 001749 548 VEAAISGFG---LEFSELREYTHGFFSNIAGVLED 579 (1018)
Q Consensus 548 ~~~l~~~l~---~~~~~~~~~~~~~l~~l~~~~~~ 579 (1018)
++..+..+. .+...++..+-.++..+-+...+
T Consensus 1648 ip~~L~~Ls~fa~e~~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1648 IPKPLMNLSSFARESAAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred hHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhhh
Confidence 444333333 34455666666666555544433
No 241
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=21 Score=41.47 Aligned_cols=176 Identities=13% Similarity=0.188 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHcchhc----hHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcC-----------hHHHHHhH---
Q 001749 315 PDRAAAEVIDTMALNLAKHV----FPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-----------AEWMKEKL--- 376 (1018)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~----~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-----------~~~~~~~l--- 376 (1018)
-|+.|..+|..++..+...+ ++++++.+..- -.|...-..++..+..+...- .+.+...+
T Consensus 39 DRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~ 116 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD--YMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQ 116 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHH
Confidence 48889999999998776333 34444433221 134555556665555554332 01111111
Q ss_pred ----HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHH---hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 001749 377 ----ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS---HYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (1018)
Q Consensus 377 ----~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~---~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (1018)
+..+..++..+..-+..||..+...+..+...-+++.+. .+|.-+..++..|.|....+|..+...|..+.+.
T Consensus 117 fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 117 FIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD 196 (970)
T ss_pred HHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc
Confidence 245677888888889999999999999999998888775 3577788889999998888999999999999988
Q ss_pred hccccc-cchHHHHHHHHHhhcCC----CHhHHHHHHHHHHHHHHHhh
Q 001749 450 MGEEIL-PFLDPLMGKLLAALENS----PRNLQETCMSAIGSVAAAAE 492 (1018)
Q Consensus 450 ~~~~~~-~~~~~l~~~l~~~l~~~----~~~vr~~al~al~~l~~~~~ 492 (1018)
.+..-. --++.++..|+.++... ..-|.+.++..+-.+.+...
T Consensus 197 n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 197 NSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 754211 23678889999988764 23577888888887776654
No 242
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.15 E-value=14 Score=44.02 Aligned_cols=128 Identities=18% Similarity=0.245 Sum_probs=75.0
Q ss_pred hchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCC---ChhHHHHHHHHHHHhHhhc
Q 001749 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP---EQFVRGAASFALGQFAEYL 409 (1018)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~ 409 (1018)
.+.+.+...+.......+...+..++.+||.+... ..++.+.+.+.+. ...+|.+|++++.+++..+
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 45566666666666677788899999999998642 4456666666655 7899999999999997766
Q ss_pred CHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcC-CCHhHHHHHHHHH
Q 001749 410 QPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQETCMSAI 484 (1018)
Q Consensus 410 ~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~al 484 (1018)
+..+. +.+++.+.+. ..+.++|.+|...|-. .-+. ..++..+...+.. ++..|+..+.+.|
T Consensus 556 ~~~v~---~~l~~I~~n~--~e~~EvRiaA~~~lm~---~~P~------~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 556 PEKVR---EILLPIFMNT--TEDPEVRIAAYLILMR---CNPS------PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHH---HHHHHHHH-T--TS-HHHHHHHHHHHHH---T---------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred cHHHH---HHHHHHhcCC--CCChhHHHHHHHHHHh---cCCC------HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 43222 2333333221 2235688777655542 2222 2345555555544 4567776665544
No 243
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.07 E-value=20 Score=42.36 Aligned_cols=169 Identities=16% Similarity=0.194 Sum_probs=90.5
Q ss_pred HHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcc-----------hhchHHHHHHHHhhhcCCChhHHHHHHHH
Q 001749 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----------KHVFPPVFEFASVSCQNASPKYREAAVTA 360 (1018)
Q Consensus 292 ~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~-----------~~~~~~~~~~l~~~l~~~~~~~r~aal~~ 360 (1018)
.++..+++++..... ......+..+.-++..++.... ..+++.+...+....+..+...+..++.+
T Consensus 393 ~~l~~l~~l~~~~~~---~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lka 469 (574)
T smart00638 393 EILKALFELAESPEV---QKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKA 469 (574)
T ss_pred HHHHHHHHHhcCccc---cccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHh
Confidence 445555555543321 1122455666667776665333 12334444444455555666778888999
Q ss_pred HHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHH
Q 001749 361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSY 440 (1018)
Q Consensus 361 l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~ 440 (1018)
||.++... .++.+.+.+. .-......+|.+|++++.+++...+..+.+ .+++.+.+ ...++++|..|+
T Consensus 470 LGN~g~~~------~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~---~l~~i~~n--~~e~~EvRiaA~ 537 (574)
T smart00638 470 LGNAGHPS------SIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQE---VLLPIYLN--RAEPPEVRMAAV 537 (574)
T ss_pred hhccCChh------HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHH---HHHHHHcC--CCCChHHHHHHH
Confidence 98876531 1222233322 223457899999999999998776553332 22332221 123467888777
Q ss_pred HHHHHHHhhhccccccchHHHHHHHHHhhcC-CCHhHHHHHHHHH
Q 001749 441 YALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQETCMSAI 484 (1018)
Q Consensus 441 ~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~al 484 (1018)
.++-. . .|-. .++..+...+.. ++..|+..+.+.|
T Consensus 538 ~~lm~---t-----~P~~-~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 538 LVLME---T-----KPSV-ALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHh---c-----CCCH-HHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 66542 1 1212 244444444443 4567776665543
No 244
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.91 E-value=12 Score=37.94 Aligned_cols=196 Identities=15% Similarity=0.109 Sum_probs=110.0
Q ss_pred CChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchHHHHH
Q 001749 261 LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFE 340 (1018)
Q Consensus 261 ~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 340 (1018)
.+++.....++.+..++.... ...+.++..+..+...... ..+..+.+.+..+-..-+ ..++.+-+
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~------~~~~~v~~~L~~L~~~~~~-------~~~~~~~rLl~~lw~~~~-r~f~~L~~ 78 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKN------VCVPPVLQTLVSLVEQGSL-------ELRYVALRLLTLLWKAND-RHFPFLQP 78 (234)
T ss_pred CChHHHHHHHHHHHHHhccCc------cchhHHHHHHHHHHcCCch-------hHHHHHHHHHHHHHHhCc-hHHHHHHH
Confidence 466667777777777665431 2344555555555544321 123344444444443333 23333333
Q ss_pred HHHh---------hhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhHhhcC
Q 001749 341 FASV---------SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-RDPEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 341 ~l~~---------~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
.+.. .-.+..|....+...++..++...++ +-..+++.+...+ ++.++.++..++.++..+++.--
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 3332 11345677777766777777776655 4557778888888 78899999999999999996543
Q ss_pred HHHHHhhhhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhh--ccccccchHHHHHHHHHhhcCCCHhHHH
Q 001749 411 PEIVSHYESVLPCILNALED-ESDEVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAALENSPRNLQE 478 (1018)
Q Consensus 411 ~~~~~~~~~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~vr~ 478 (1018)
-++.+.+.-+.+.+ .. ..+.+....|..+..+-... .+....+...++..+.+.....+.+...
T Consensus 155 vd~~s~w~vl~~~l----~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~ 221 (234)
T PF12530_consen 155 VDFYSAWKVLQKKL----SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVAS 221 (234)
T ss_pred ccHHHHHHHHHHhc----CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHH
Confidence 34444444444443 32 23445554444444332222 1223445667888888887776644333
No 245
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.66 E-value=3.2 Score=49.60 Aligned_cols=149 Identities=16% Similarity=0.243 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHc--c-hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHH--------------HHHhHHHHHH
Q 001749 319 AAEVIDTMALNL--A-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEW--------------MKEKLESVLH 381 (1018)
Q Consensus 319 a~~~l~~l~~~~--~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~--------------~~~~l~~l~~ 381 (1018)
+.+.+..+.... | .+++..+.+++..-....+...|.+|+.+++.+....... ...+++.+..
T Consensus 414 a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQ 493 (618)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHH
Confidence 445555555433 2 4455555544432222345678899999999988742211 1122334444
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCC---ChHHHHHHHHHHHHHHhhhccccccch
Q 001749 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE---SDEVKEKSYYALAAFCEDMGEEILPFL 458 (1018)
Q Consensus 382 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~v~~~a~~al~~l~~~~~~~~~~~~ 458 (1018)
.+-......+...+..++.+||++.. +..++.+...+.+. ...+|..|++|+..+....++
T Consensus 494 ~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~------ 557 (618)
T PF01347_consen 494 ELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE------ 557 (618)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH------
T ss_pred HHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH------
Confidence 44445556677888899999998863 25666666666655 467999999999877555443
Q ss_pred HHHHHHHHHhhcCC--CHhHHHHHHHHH
Q 001749 459 DPLMGKLLAALENS--PRNLQETCMSAI 484 (1018)
Q Consensus 459 ~~l~~~l~~~l~~~--~~~vr~~al~al 484 (1018)
.+.+.++.++.+. +.++|..|+..+
T Consensus 558 -~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 558 -KVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -HHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 3555566666554 678998887655
No 246
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=0.48 Score=44.70 Aligned_cols=87 Identities=11% Similarity=0.116 Sum_probs=70.9
Q ss_pred HHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcC---cchh
Q 001749 795 FDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGG---ESAL 871 (1018)
Q Consensus 795 ~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~---~~~~ 871 (1018)
+|.+..-+.+... -.|..|-..+-|++...|+.+.|.+++++..+-.+|...|.+|...+...|-.++...+ ..+.
T Consensus 116 Lp~F~dGL~e~~h-pyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLV 194 (262)
T KOG3961|consen 116 LPLFFDGLAETDH-PYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALV 194 (262)
T ss_pred HHHHhhhhhhcCC-CcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhh
Confidence 3444444443322 34788888999999999999999999999999999999999999999999999987654 5678
Q ss_pred hHHHHHHHhhh
Q 001749 872 KYYGDILRGLY 882 (1018)
Q Consensus 872 ~~~~~il~~L~ 882 (1018)
||+-++++.+.
T Consensus 195 PfYRQlLp~~n 205 (262)
T KOG3961|consen 195 PFYRQLLPVLN 205 (262)
T ss_pred hHHHHhhhhhh
Confidence 99999998874
No 247
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.56 E-value=1.9 Score=39.44 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=63.9
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhhcc
Q 001749 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 377 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~ 452 (1018)
...+..|.+.+.++++.|+..|+..+..++..+|..+...+ ..++..+.+.+.+ .+..|+..+...+....+.++.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 35677888889999999999999999999999998776432 5778888888877 5678999999999999888864
No 248
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.52 E-value=14 Score=37.81 Aligned_cols=192 Identities=12% Similarity=0.096 Sum_probs=93.5
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc--chhHhHHHHHHHHHHHhc-CCCCChHHHHHHHHHH
Q 001749 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP--LLGDSVKSIVHFSLEVSS-SHNLEPNTRHQAIQII 273 (1018)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~li~~l~~~~~-~~~~~~~~r~~a~~~l 273 (1018)
..+.-+++..+++.+.... .+.+.+.|+.++.++.+..++ .+.+.+..=+..+.+.+. .+..++++ ..-++++
T Consensus 230 i~K~~dli~dli~iVk~~~---keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel-~~di~~i 305 (432)
T COG5231 230 IDKMDDLINDLIAIVKERA---KEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEEL-VIDIERI 305 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHH-HHHHHHH
Confidence 3445556666666554332 346777888888888874432 222322221222233333 33334444 4556666
Q ss_pred HHHHHHhHHHh-hhcCChHHHHHHHhhhhccCCCC-CCCCCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCCh
Q 001749 274 SWLAKYKYNSL-KKHKLVIPILQVMCPLLAESNEA-GEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASP 351 (1018)
Q Consensus 274 ~~~~~~~~~~~-~~~~~~~~i~~~l~~~l~~~~~d-~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 351 (1018)
.+..+...+.+ .-..|...+.. -+-+|.+- .+.|-|+ +-++++.... . .++..+..++++.++
T Consensus 306 ~s~l~~~~k~l~~fD~Y~~ELds----g~l~wSp~H~~~dFWs------~N~d~l~kdn----y-~i~k~L~~~lq~n~~ 370 (432)
T COG5231 306 RSRLVQNTKKLCIFDNYLNELDS----GRLEWSPYHHKKDFWS------TNLDMLIKDN----Y-EIVKVLKKYLQSNNP 370 (432)
T ss_pred HHHHHhhhhhhhHHHHHHHHHhh----CcccCCCcccccCchh------hhHHHHhhhh----H-HHHHHHHHHHhcCCC
Confidence 65544333221 11112222221 12222211 1122332 2333333211 1 133333444544433
Q ss_pred h-HHHHHHHHHHHHhhcChHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001749 352 K-YREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (1018)
Q Consensus 352 ~-~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 407 (1018)
. --..|+.-++.+.+..++...--.. ..=..++..+++++++||..|+.++..+..
T Consensus 371 nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 371 NTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred CceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 3 3456677777777776643221111 123467888999999999999999887754
No 249
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=92.42 E-value=28 Score=41.17 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=56.8
Q ss_pred hhHhHHHHHHHHHHHhCCCCCC-hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhhhhhhHHHHHHHHHhc
Q 001749 893 AVRDNAAGAVARMIMVNPQSIP-LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVV 969 (1018)
Q Consensus 893 ~~~~na~~al~~l~~~~~~~~~-~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~~~~ 969 (1018)
.++++....+.+..-..-...+ .++++-.+++.++-.++.+|+....+.+..++....+.+.+..+.+++.+-+...
T Consensus 508 T~~~a~~t~~~~~n~~~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~ 585 (947)
T COG5657 508 TTREAYSTIFDDWNFSVCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVE 585 (947)
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHH
Confidence 3455554444443322212233 6788888999999999999999999999999988888898877888887777664
No 250
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.34 E-value=16 Score=38.27 Aligned_cols=119 Identities=13% Similarity=0.241 Sum_probs=92.4
Q ss_pred cccchHHHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHHhhc-cchh----hHHHHHHHHHHHHhccCchhhhhHHHHHHH
Q 001749 454 ILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQ-AFIP----YAERVLELLKIFMVLTNDEDLRSRARATEL 527 (1018)
Q Consensus 454 ~~~~~~~l~~~l~~~l~~~-~~~vr~~al~al~~l~~~~~~-~~~~----~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~ 527 (1018)
..|+-..+..+|.++++.. ...|...|++....+-...|. .+.. |.+.++|++... ...+|...++.
T Consensus 48 ~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~a-------si~Vkp~lL~i 120 (307)
T PF04118_consen 48 YIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYA-------SIQVKPQLLDI 120 (307)
T ss_pred eeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHH-------HHhhHHHHHHH
Confidence 4466667899999999876 678999999999999988874 3333 445555554331 23467777777
Q ss_pred HHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccC
Q 001749 528 LGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDG 580 (1018)
Q Consensus 528 l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 580 (1018)
+...--.+|+ .+.|.++.++-.++.++.++..+..+.++..+..+...+|.+
T Consensus 121 ~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 121 YEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 7766666777 788899999999999999888899999999999999998886
No 251
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.81 E-value=25 Score=39.23 Aligned_cols=105 Identities=19% Similarity=0.136 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC--CCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcc
Q 001749 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT 152 (1018)
Q Consensus 75 ~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~ 152 (1018)
....+...++.+..+ ++..||...+++++.+...-.+ ..-++.++..+..-+-+..+.+|..|+.+|..+-+..++
T Consensus 88 ~V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n- 165 (885)
T COG5218 88 LVAGTFYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN- 165 (885)
T ss_pred HHHHHHHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC-
Confidence 445555566666664 8999999999999998764322 234566777777777778888999999999887654432
Q ss_pred ccccHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001749 153 FRPHFADMQALLLKCLQDETSNRVRIAALKAI 184 (1018)
Q Consensus 153 ~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l 184 (1018)
.-+.+..++...++++|+.+||.+|+--+
T Consensus 166 ---een~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 166 ---EENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ---hHHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 12344556667776559999999987544
No 252
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=91.80 E-value=10 Score=43.62 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHc-------ccCCCCCccchHHHHH----HhhcCCChHHHHHHHHHHHHh
Q 001749 78 LVKQSLIESITLE-HSAPVRRASANVVSIIAK-------YAVPAGEWPDLLPFLF----QFSQSEQEEHREVALILFSSL 145 (1018)
Q Consensus 78 ~i~~~Ll~~l~~e-~~~~vr~~~~~~l~~i~~-------~~~~~~~w~~ll~~l~----~~~~s~~~~~r~~al~~l~~l 145 (1018)
.+...+-+.+... .+..++++.|+++..|.. .+.....|.+.+..+. +++.. +++...++-+...+
T Consensus 129 ~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~l 206 (552)
T PF14222_consen 129 EFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTL 206 (552)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHH
Confidence 4445555666544 356699999999998743 1221136877665554 44432 45566677777666
Q ss_pred hhhhh-ccccccHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 001749 146 TETIG-QTFRPHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFL 188 (1018)
Q Consensus 146 ~~~~~-~~~~~~~~-~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~ 188 (1018)
.-..+ +.|..++. +++..+..-+.| . ..|..++.++.+++
T Consensus 207 LCvS~~e~F~~~W~~~~i~~~~~klKd-k--~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 207 LCVSPKEFFLSNWLPSLIESLISKLKD-K--ETRPVALECLSRLL 248 (552)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHhhcCC-h--hhhHHHHHHHHHHH
Confidence 55444 45566666 577766666766 3 78999999998864
No 253
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=13 Score=46.74 Aligned_cols=258 Identities=12% Similarity=0.133 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001749 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1018)
Q Consensus 158 ~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (1018)
+.-+..+.+-+.. .++..|.-|+..++.++..... .....++|.......+++.+++..+|......+..+...-
T Consensus 40 dsel~~I~kkL~K-kD~~TK~KaL~eL~eli~~~~~----e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~l 114 (1312)
T KOG0803|consen 40 DSELDIIVKKLLK-RDETTKIKALQELSELIDTSDT----EELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKL 114 (1312)
T ss_pred CHHHHHHHHHHhc-cChHHHHHHHHhHHHhcccccc----hHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 3334455566666 6788999999999999876642 2234478888888888889999999999999999998877
Q ss_pred ccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHH
Q 001749 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWL-AKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPD 316 (1018)
Q Consensus 238 ~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~ 316 (1018)
.+.+.+++..+++.++-.. .+.+..+...|...+... .+.+...+.. ...+.+...+-..+....++..++ .+
T Consensus 115 kk~lsp~LK~li~~wl~~~--~d~~~~vs~aa~~sf~~~f~~ek~~~v~~-~c~~~i~~~~~~~~~~~~~~slSd---~~ 188 (1312)
T KOG0803|consen 115 KKKLSPFLKSLIPPWLGGQ--FDLDYPVSEAAKASFKDGFAEEKDRHVWF-KCDPEIFYLVTEILVKETPDSLSD---LR 188 (1312)
T ss_pred HHHhhHHHHhhhhhhhhee--cccchHHHHHHHHHHHhhcChhhhHHHHH-HhhHHHHHHHHHHHhccCccccch---hh
Confidence 7777788888877765322 233444444544333222 2111111100 123344444444433222211111 00
Q ss_pred HHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhc--ChHH---HHHhHHHH--HHHHHhhcCC
Q 001749 317 RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG--CAEW---MKEKLESV--LHIVLGALRD 389 (1018)
Q Consensus 317 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~--~~~~---~~~~l~~l--~~~l~~~l~d 389 (1018)
..+.+. +.....++...++.++..+... ..+. ..+....+ -..+++.+.+
T Consensus 189 ~~s~Ee-----------------------~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~ 245 (1312)
T KOG0803|consen 189 TLSSEE-----------------------LESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKS 245 (1312)
T ss_pred hcchHH-----------------------HHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcC
Confidence 000000 0011111111222222222110 0000 01112222 2467888999
Q ss_pred CChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 390 PEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 390 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
+.+.++.+...++..++........+.. ..+.+.+.....+.+ .|......++-.+....
T Consensus 246 k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~ 306 (1312)
T KOG0803|consen 246 KSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSL 306 (1312)
T ss_pred CCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhh
Confidence 9999999999999999988765533333 344444444444443 33333333333333433
No 254
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.69 E-value=21 Score=38.11 Aligned_cols=192 Identities=9% Similarity=0.092 Sum_probs=110.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCC----------CCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhh
Q 001749 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA----------GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (1018)
Q Consensus 79 i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~----------~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~ 148 (1018)
+...|+..|.. -+...|+.++.+.+.+.+..... ..||+++..+.....+++...-.+ .++..++.+
T Consensus 77 ll~~Li~~L~~-L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g--~mlRec~k~ 153 (335)
T PF08569_consen 77 LLYLLIRNLPK-LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCG--DMLRECIKH 153 (335)
T ss_dssp HHHHHHHTGGG-S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHH--HHHHHHTTS
T ss_pred HHHHHHHHhhh-CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHH--HHHHHHHhh
Confidence 33344455543 56667777777777766543211 357889999998887665322222 233333322
Q ss_pred h--hccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHH
Q 001749 149 I--GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIA 226 (1018)
Q Consensus 149 ~--~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a 226 (1018)
- ...+- + +..+-.+...... ++.+|-.-|+.++..+....+. ....-+......+......++.+++-=.+..+
T Consensus 154 e~l~~~iL-~-~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~-~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 154 ESLAKIIL-Y-SECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKK-LVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HHHHHHHH-T-SGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHH-HHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHHHHHHh-C-cHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 1 11100 0 1122224456666 8899988888888877654321 11222344555666666677888888899999
Q ss_pred HHHHHHHhcCCc--cchhHhH--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 001749 227 FEIFDELIESPA--PLLGDSV--KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (1018)
Q Consensus 227 ~~~l~~l~~~~~--~~~~~~~--~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~ 279 (1018)
++.|+++..... ..+..++ +.-+..++.++.+ .+..+|..|..++.-++.+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d--~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD--KSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC--cchhhhHHHHHHHHHHHhC
Confidence 999999986542 3344443 3345556666664 4778999999988877754
No 255
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.53 E-value=0.35 Score=33.05 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=26.8
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 001749 835 RVMPLVLKELASPDAMNRRNAAFCVGELC 863 (1018)
Q Consensus 835 ~l~~~l~~~l~~~~~~vr~~a~~~lg~l~ 863 (1018)
..+|.+++.+.+++++++.+|+++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999986
No 256
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=91.46 E-value=9.9 Score=40.02 Aligned_cols=126 Identities=14% Similarity=0.247 Sum_probs=69.9
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHH
Q 001749 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL 461 (1018)
Q Consensus 382 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l 461 (1018)
.|+...+-.... ++-|...+.++..+++. .....+.+-+....|.+..||..|+.-|-.||.. +. +..+
T Consensus 29 ~il~~~k~~~k~-k~lasq~ip~~fk~fp~----la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~----~~rv 97 (460)
T KOG2213|consen 29 GILKAVKGTSKE-KRLASQFIPRFFKHFPS----LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DA----LSRV 97 (460)
T ss_pred HHHHHhhcchHH-HHHHHHHHHHHHhhCch----hhhHHHHhhhccccccchhhHHHHHhccchhccC--ch----hhhh
Confidence 344444433333 44567788888887753 2335566666777888888999999999888876 22 2222
Q ss_pred HHHHHHhhcC------------CCHhHHHHHHHHHHHHHHHhhcc-ch-hhHHHHHHHHHHHHhccCchhh
Q 001749 462 MGKLLAALEN------------SPRNLQETCMSAIGSVAAAAEQA-FI-PYAERVLELLKIFMVLTNDEDL 518 (1018)
Q Consensus 462 ~~~l~~~l~~------------~~~~vr~~al~al~~l~~~~~~~-~~-~~~~~i~~~l~~~l~~~~~~~~ 518 (1018)
.+.|.++|+. .+..+|+.++.-|..=...++.. +. +.-..++..+++.++..+.++.
T Consensus 98 ~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef 168 (460)
T KOG2213|consen 98 NDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEF 168 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHH
Confidence 2333333221 35667777776665433333322 11 2223355555666655444433
No 257
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=27 Score=38.94 Aligned_cols=177 Identities=16% Similarity=0.166 Sum_probs=92.3
Q ss_pred hhhhHHHHHHHhccCCC---hHHHHHHHHHHHHHHh--hhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001749 416 HYESVLPCILNALEDES---DEVKEKSYYALAAFCE--DMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1018)
Q Consensus 416 ~~~~~l~~l~~~l~~~~---~~v~~~a~~al~~l~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~ 490 (1018)
....++..+...+++++ ..+-..+..++++-.+ .++.+..--...++..++..++ +....+.|..++..+...
T Consensus 150 ~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~ 227 (559)
T KOG2081|consen 150 QVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLYC 227 (559)
T ss_pred hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHH
Confidence 34455555555665443 3344555566655444 2221111111145556666666 456777888888777665
Q ss_pred hhc---c--chhhH---HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHh------hhhhhcCCChHHHHHHHHhccC
Q 001749 491 AEQ---A--FIPYA---ERVLELLKIFMVLTNDEDLRSRARATELLGLVAES------VGRARMEPILPPFVEAAISGFG 556 (1018)
Q Consensus 491 ~~~---~--~~~~~---~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~------~g~~~~~~~~~~l~~~l~~~l~ 556 (1018)
..+ . +.+.+ ..+++...+.-....+.+ .+...-+.+..++.+ .+++ +.-.+++.++-.-.
T Consensus 228 ~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d--~~~a~~RIFtel~eaf~~~i~~np~----~~l~~vellLl~~~ 301 (559)
T KOG2081|consen 228 SLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLD--KNEAICRIFTELGEAFVVLISTNPE----EFLRIVELLLLVAG 301 (559)
T ss_pred hhhhhccCchhHHHhccccccchHHHHhhcccCHH--HHHHHHHHHHHHHHHHHHHHhhCCC----cchhHHHHHHHhcc
Confidence 542 1 22211 112333332222222222 221222333333322 2233 22334444443344
Q ss_pred CCChhHHHHHHHHHHHHHHHcc--------cCcccchhhhhHHHHhhccCCC
Q 001749 557 LEFSELREYTHGFFSNIAGVLE--------DGFAQYLPLVVPLAFSSCNLDD 600 (1018)
Q Consensus 557 ~~~~~~~~~~~~~l~~l~~~~~--------~~~~~~l~~i~~~ll~~~~~~~ 600 (1018)
.++.++.+..+..|..+.+.+- .-|.||...++..+...+++.+
T Consensus 302 h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~ 353 (559)
T KOG2081|consen 302 HNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP 353 (559)
T ss_pred CCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC
Confidence 4566888999999999887553 2378999999999999988765
No 258
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.26 E-value=23 Score=37.77 Aligned_cols=106 Identities=17% Similarity=0.266 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHhcCCccchhHhHHHHH
Q 001749 175 RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-----GEEDVAVIAFEIFDELIESPAPLLGDSVKSIV 249 (1018)
Q Consensus 175 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li 249 (1018)
.+|+..++.+..++...++.. ....+++|++++.+..--++ .++++......++.++.+...+.+...+..++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~--~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPE--EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HH--HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 367788888888888876542 34567899988864332222 33444444444445555545566666666666
Q ss_pred HHHHHHhcCC-CCChHHHHHHHHHHHHHHHHhHH
Q 001749 250 HFSLEVSSSH-NLEPNTRHQAIQIISWLAKYKYN 282 (1018)
Q Consensus 250 ~~l~~~~~~~-~~~~~~r~~a~~~l~~~~~~~~~ 282 (1018)
+..+.....+ ..-++.|..-..++..+.+....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~ 153 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFP 153 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHH
Confidence 6666666543 23478888888888877765443
No 259
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.13 E-value=3.8 Score=37.43 Aligned_cols=77 Identities=10% Similarity=0.114 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhhccc
Q 001749 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEE 453 (1018)
Q Consensus 377 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~ 453 (1018)
...+..|.+.|.++++.|+..|+..+..++..+|..+...+ ..++..+.+.+. ..++.|+..++..+......++..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 35677888889999999999999999999999988765422 566777776665 456789999999999999888543
No 260
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.00 E-value=26 Score=37.93 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=96.2
Q ss_pred chhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhh----c-ChHHHHHhHHHHHHHHHhhcCCCChhHHH---HHHHHH
Q 001749 331 AKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE----G-CAEWMKEKLESVLHIVLGALRDPEQFVRG---AASFAL 402 (1018)
Q Consensus 331 ~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~----~-~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~---~a~~~l 402 (1018)
+..+-+.++..+...+++.....|++-+.+++.+.. + ......+.++.++..+-+....+.+.... .++.++
T Consensus 55 ~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~ 134 (339)
T PF12074_consen 55 SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVL 134 (339)
T ss_pred CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHH
Confidence 345567788888899999998899999999999875 2 23344455666666666666666554331 111111
Q ss_pred HHhHhhcCHHHHH--hhh-----------hHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccc-hHHHHHHHHHh
Q 001749 403 GQFAEYLQPEIVS--HYE-----------SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF-LDPLMGKLLAA 468 (1018)
Q Consensus 403 ~~l~~~~~~~~~~--~~~-----------~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~-~~~l~~~l~~~ 468 (1018)
-.+.....+.+.. ... -+-+.+...+.+. .-..-.+.++..+.........+. ....-..++.+
T Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~--~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~l 212 (339)
T PF12074_consen 135 LALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASE--EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYL 212 (339)
T ss_pred HHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCH--hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHH
Confidence 1111111011100 000 0011222222111 122234455555555544333322 35566777777
Q ss_pred hcCC--CHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHh
Q 001749 469 LENS--PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV 511 (1018)
Q Consensus 469 l~~~--~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 511 (1018)
+.++ .+.+|..|+.++..+....+..+ -..++..+.+.+.
T Consensus 213 l~s~~~~~~vR~~A~~~l~~l~~~~~~~l---~~~li~~l~~~l~ 254 (339)
T PF12074_consen 213 LCSSNVSWKVRRAALSALKKLYASNPELL---SKSLISGLWKWLS 254 (339)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHH
Confidence 7777 89999999999999888777652 2334444444443
No 261
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.98 E-value=19 Score=36.37 Aligned_cols=195 Identities=19% Similarity=0.171 Sum_probs=109.8
Q ss_pred cCCChHHHHHHHHHHHHHhcCC-CcHHHHHHHHh---cCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHH-
Q 001749 13 LMPDNDARRQAEDQIKRLAKDP-QVVPALVQHLR---TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESI- 87 (1018)
Q Consensus 13 ~s~d~~~r~~A~~~L~~~~~~p-~~~~~l~~~l~---~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l- 87 (1018)
..++++.....-+.|-++..+. ...+..++++. +......+.++..++-+. |..-+ .....++..+....
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~l----w~~~~-r~f~~L~~~L~~~~~ 85 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLL----WKAND-RHFPFLQPLLLLLIL 85 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHH----HHhCc-hHHHHHHHHHHHHHh
Confidence 3467778888888887777655 54455555543 333444444555444444 54322 12244554444411
Q ss_pred -----hh--cCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhh-cCCChHHHHHHHHHHHHhhhhhhccccccHHH
Q 001749 88 -----TL--EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS-QSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (1018)
Q Consensus 88 -----~~--e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~-~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 159 (1018)
.. +......-..+..+..+.... | +.|+++++.+...+ ++.++..+..++..+..+|+...-.+...+
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w-- 161 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSR-P-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW-- 161 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhC-h-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH--
Confidence 11 233445555566777777665 4 39999999999999 778888889999999999955433333333
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHH
Q 001749 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221 (1018)
Q Consensus 160 l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 221 (1018)
..+..-++.+..+.|-..-+ .+..++....- +...+..+...++..+.+.....+.+
T Consensus 162 --~vl~~~l~~~~rp~v~~~l~-~l~~l~~~~~~--~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 162 --KVLQKKLSLDYRPLVLKSLC-SLFALVPQGAV--DSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred --HHHHHhcCCccchHHHHHHH-HHHHHhccccC--ChhhhhHHHHHHHHHHHhhccccccc
Confidence 33333344434555444322 22233333321 23445556666777666666555433
No 262
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.83 E-value=38 Score=39.52 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcC----------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCH
Q 001749 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD----------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSP 73 (1018)
Q Consensus 4 ~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~----------p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~ 73 (1018)
++..++.-+.++++.++..|..++..+... =+-++.|+.++. +...+++..|+-.|||++... .+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~---~~~ 309 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGK---STD 309 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhccc---CCc
Confidence 567788888899999999998888765422 134677777664 667899999999999997542 222
Q ss_pred HHHHHHH-----HHHHHHHhhcCCHHHHHHHHHHH
Q 001749 74 QLKQLVK-----QSLIESITLEHSAPVRRASANVV 103 (1018)
Q Consensus 74 ~~~~~i~-----~~Ll~~l~~e~~~~vr~~~~~~l 103 (1018)
+.+-.|+ ..+++.|..-.|..+|+.++.++
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~L 344 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGIL 344 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHH
Confidence 2333343 35667777667888988887443
No 263
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.70 E-value=0.48 Score=32.35 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001749 378 SVLHIVLGALRDPEQFVRGAASFALGQFA 406 (1018)
Q Consensus 378 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 406 (1018)
..+|.++..|.++++.||..|+|+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36888999999999999999999999986
No 264
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.63 E-value=36 Score=38.88 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=85.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhhccc-CChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001749 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFT-NDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (1018)
Q Consensus 162 ~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (1018)
..+...|.+ .+...|-+.+.+.++++... .++.....+..-+..++.++.+.+.|.++-++..|++.+..+.+....+
T Consensus 302 ~~~~~LLds-es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 302 EHFDELLDS-ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHhcc-cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 445566766 78889999999999987544 3444455566677788888888899999999999999999999887665
Q ss_pred hhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHH
Q 001749 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN 282 (1018)
Q Consensus 241 ~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~ 282 (1018)
.+.- ..++......+++ -+.-+|+.|+..++.+.-.+|.
T Consensus 381 ~~~r-~ev~~lv~r~lqD--rss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 381 VGRR-HEVIRLVGRRLQD--RSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred cchH-HHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHhcCCh
Confidence 5432 2344444444443 4678999999999888766554
No 265
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=90.35 E-value=4.2 Score=37.64 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh----------------HHHHHhHHHHH
Q 001749 317 RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA----------------EWMKEKLESVL 380 (1018)
Q Consensus 317 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~----------------~~~~~~l~~l~ 380 (1018)
.....++..++...-..-.|.+++.+.+.+++ +.......+..+..+.+... +.+....+.++
T Consensus 6 ~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~ 84 (148)
T PF08389_consen 6 NKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDIL 84 (148)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHH
Confidence 33445555555443222334444444444444 35566666666666665332 12334456667
Q ss_pred HHHHhhcCCCC----hhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHH
Q 001749 381 HIVLGALRDPE----QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYAL 443 (1018)
Q Consensus 381 ~~l~~~l~d~~----~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al 443 (1018)
..+.+.+.... ..+...++.+++.+..+.+...... ..+++.+++.+.+++ .+..|+.+|
T Consensus 85 ~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 85 EILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 77766665332 8889999999999999876543222 458999999996654 477777764
No 266
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=90.32 E-value=22 Score=38.59 Aligned_cols=198 Identities=15% Similarity=0.111 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHh----h
Q 001749 790 IFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCK----N 865 (1018)
Q Consensus 790 ~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~----~ 865 (1018)
....++..+..++..+........++.+++.-..+.+. ..-+.++..+.+++.+..+.+|+.-+.++|.+.. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~---~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS---ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc---CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 45567777777777665545466667777666655522 3346788999999999999999999999999987 1
Q ss_pred cC-cchhhHHHHHHHhhhhccCCCCCCc--hhHhHHHHHHHHHHHhCCCCC-------------Chhh--HHHHHHhhCC
Q 001749 866 GG-ESALKYYGDILRGLYPLFGDSEPDD--AVRDNAAGAVARMIMVNPQSI-------------PLNQ--VLPVLLKVLP 927 (1018)
Q Consensus 866 ~~-~~~~~~~~~il~~L~~~l~~~~~~~--~~~~na~~al~~l~~~~~~~~-------------~~~~--~l~~~l~~lp 927 (1018)
.. ....++++.+++.+......+-... .....+...++ +.....+.+ |-+. +-+.+...+
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl- 173 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL- 173 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc-
Confidence 11 1123445555555544444321111 11122222222 000000000 0001 111222222
Q ss_pred CCCcHHhhHHHHHHHHHHHhhcChhhhhh-hhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHh
Q 001749 928 LKEDFEESMAVYNCISTLVLSSNPQILSL-VPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQ 994 (1018)
Q Consensus 928 ~~~d~~e~~~~~~~l~~l~~~~~~~~~~~-~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 994 (1018)
.++++..-..+++..++...+....+. ...+-+.+...+.+.....++|+...+.++.+....|.
T Consensus 174 --~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 174 --ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred --CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH
Confidence 445666677777777665333333333 35566777777776655678999999999998887765
No 267
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.05 E-value=8 Score=35.10 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=72.5
Q ss_pred hhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHHH
Q 001749 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (1018)
Q Consensus 345 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~ 422 (1018)
.+.++||..--..+..+..=..+ -...+..|.+.++++++.|...|+..+..++..+|..+...+ ..++.
T Consensus 13 ~l~~~dw~~ileicD~In~~~~~--------~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 13 SNREEDWEAIQAFCEQINKEPEG--------PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred cCCCCCHHHHHHHHHHHHcCCcc--------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 35567776554444444321111 135677888889999999999999999999999998775432 56777
Q ss_pred HHHHhccC------CChHHHHHHHHHHHHHHhhhcc
Q 001749 423 CILNALED------ESDEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 423 ~l~~~l~~------~~~~v~~~a~~al~~l~~~~~~ 452 (1018)
.+++.+.. .+..|+..++..+....+.+++
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 77777753 4578999999999998888753
No 268
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.00 E-value=30 Score=36.98 Aligned_cols=184 Identities=14% Similarity=0.169 Sum_probs=111.3
Q ss_pred ChhHHHHHHHHHHHhhhhhhccCCHHHHH-------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCC--CCccch
Q 001749 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQ-------LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA--GEWPDL 119 (1018)
Q Consensus 49 ~~~~R~~a~~~l~~~i~~~w~~l~~~~~~-------~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~--~~w~~l 119 (1018)
+-+.|+-++.++.+.++..-..=.....+ .+...|+.+.. ++.+--.++.++...++++.-. --+++.
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~mlRec~k~e~l~~~iL~~~~ 165 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDMLRECIKHESLAKIILYSEC 165 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHHHHHTTSHHHHHHHHTSGG
T ss_pred CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHHHHHHhhHHHHHHHhCcHH
Confidence 56788888888888876543321101223 33334444333 4555566677777766543100 012444
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhh----hccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChh
Q 001749 120 LPFLFQFSQSEQEEHREVALILFSSLTETI----GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (1018)
Q Consensus 120 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~----~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~ 195 (1018)
+..+++.++.++-+...-|+.++..+...- .+.+..+++.++..+..++.+ ++--+|..+++.|+.++.......
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-~NYvtkrqslkLL~ellldr~n~~ 244 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-SNYVTKRQSLKLLGELLLDRSNFN 244 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC-CCeEeehhhHHHHHHHHHchhHHH
Confidence 555788888888888888999999887543 344566778888888888988 899999999999999875432110
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001749 196 EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (1018)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (1018)
-...+- --|.-+..+-..+.+....++..|+.++.-++..+
T Consensus 245 vm~~yi-~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 245 VMTRYI-SSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHT-T-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHH-CCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 011110 11223333333577888889999999998888654
No 269
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.94 E-value=7.2 Score=35.29 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHh-h-hhHHHHHHHhccC---CChHHHHHHHHHHHHHHhhhc
Q 001749 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH-Y-ESVLPCILNALED---ESDEVKEKSYYALAAFCEDMG 451 (1018)
Q Consensus 377 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-~-~~~l~~l~~~l~~---~~~~v~~~a~~al~~l~~~~~ 451 (1018)
...+..|.+.|.++++.++..|+..+..++..++..+... . ..++..+.+.+.. .++.|+..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567788889999999999999999999999999876543 2 2666667777764 356899999999999998886
Q ss_pred c
Q 001749 452 E 452 (1018)
Q Consensus 452 ~ 452 (1018)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 5
No 270
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.75 E-value=6.5 Score=36.00 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhh
Q 001749 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (1018)
Q Consensus 458 ~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~ 535 (1018)
-...+..|.+-+++.++.++..|+..+..++..+|..|...+ ..++..|..++... ....++.++++.+...+..+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~--~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR--VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHh
Confidence 456778888888889999999999999999999998887655 45777777777654 33457788888888888766
Q ss_pred hh
Q 001749 536 GR 537 (1018)
Q Consensus 536 g~ 537 (1018)
..
T Consensus 113 ~~ 114 (144)
T cd03568 113 KN 114 (144)
T ss_pred CC
Confidence 53
No 271
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.64 E-value=5.5 Score=36.43 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=67.5
Q ss_pred HHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHhccCch-hhhhH
Q 001749 445 AFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDE-DLRSR 521 (1018)
Q Consensus 445 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~-~~~~r 521 (1018)
.+|+..... .......+..|.+-+.+.+++++..|+..+..++..+|..|...+ ..++..|..++...... ...+|
T Consensus 28 ~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk 106 (140)
T PF00790_consen 28 EICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVK 106 (140)
T ss_dssp HHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHH
T ss_pred HHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHH
Confidence 344444322 233467888888899999999999999999999999998887665 56777777776654322 22378
Q ss_pred HHHHHHHHHHHHhhhh
Q 001749 522 ARATELLGLVAESVGR 537 (1018)
Q Consensus 522 ~~a~~~l~~l~~~~g~ 537 (1018)
.++++.+...+..++.
T Consensus 107 ~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 107 EKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHCC
Confidence 8899998888877743
No 272
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=89.08 E-value=33 Score=36.26 Aligned_cols=206 Identities=18% Similarity=0.203 Sum_probs=113.4
Q ss_pred hcCCChhHHHHHHHHH--HHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCH--HHHHhhhhHH
Q 001749 346 CQNASPKYREAAVTAI--GIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--EIVSHYESVL 421 (1018)
Q Consensus 346 l~~~~~~~r~aal~~l--~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~~l 421 (1018)
..+.+.+.|.+++.-+ ...++..++.+.+....+...+..+++.+...-+..+...+|..+...++ ..........
T Consensus 69 ~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~ 148 (427)
T KOG2842|consen 69 VKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLG 148 (427)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccc
Confidence 3456678899998554 44456677777787788888999999988877777777777777766653 3334555566
Q ss_pred HHHHHhccCCC--hHHHHHHHHHHHHHHhhhccccc---cchHHHHHHHHHh-hcCC---------CHhHHHHHHHHHHH
Q 001749 422 PCILNALEDES--DEVKEKSYYALAAFCEDMGEEIL---PFLDPLMGKLLAA-LENS---------PRNLQETCMSAIGS 486 (1018)
Q Consensus 422 ~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~---~~~~~l~~~l~~~-l~~~---------~~~vr~~al~al~~ 486 (1018)
|.+...+.+.+ ...+..++.+++.-+......+. .++..+-...... +... ..-....++.+.+-
T Consensus 149 ~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~ 228 (427)
T KOG2842|consen 149 PFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSL 228 (427)
T ss_pred hHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHH
Confidence 66555555544 45567777777766554422221 1111111111111 1111 11122233333333
Q ss_pred HHHHhhccchhhHHH-HHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHH
Q 001749 487 VAAAAEQAFIPYAER-VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAA 551 (1018)
Q Consensus 487 l~~~~~~~~~~~~~~-i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l 551 (1018)
+...++.....+... ..|.+..++.....+....++.++..+..+++....+.+.|.-+.+...+
T Consensus 229 ~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~l 294 (427)
T KOG2842|consen 229 LLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTL 294 (427)
T ss_pred HHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHH
Confidence 333333333333322 44666666655433444456666777777776655545556666655543
No 273
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.05 E-value=3.8 Score=37.44 Aligned_cols=77 Identities=12% Similarity=0.171 Sum_probs=60.8
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcccccc-ch-HHHHHHHHHhhc-CCCHhHHHHHHHHHHHHHHHhhcc
Q 001749 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP-FL-DPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQA 494 (1018)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~-~~l~~~l~~~l~-~~~~~vr~~al~al~~l~~~~~~~ 494 (1018)
...+..+.+.|.++++.++..|...|..+++++|..+.. +. ..+++.|..++. ..+..|+..++..+..-+...+..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 467778888889999999999999999999999876543 22 256677777665 457899999999998888777643
No 274
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.88 E-value=9.4 Score=34.51 Aligned_cols=79 Identities=13% Similarity=0.078 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhh
Q 001749 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (1018)
Q Consensus 458 ~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~ 535 (1018)
-...+..|.+-+++.++.++..|+..+..++..+|..|...+ ..++..|..++....... .++.++++.+...+.++
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~-~Vk~kil~li~~W~~~f 113 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLP-LVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHHHHHHH
Confidence 346778888888999999999999999999999999887655 457777777776543221 27888888888888777
Q ss_pred hh
Q 001749 536 GR 537 (1018)
Q Consensus 536 g~ 537 (1018)
..
T Consensus 114 ~~ 115 (133)
T smart00288 114 KN 115 (133)
T ss_pred cC
Confidence 43
No 275
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=88.64 E-value=4 Score=37.84 Aligned_cols=130 Identities=15% Similarity=0.112 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHHHHHHHhHHHHHHHHhCC-ChHHHHHHHHHHHHHhhccC-
Q 001749 728 PYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP-HFAPIFAKLFDPLMKFAKSS- 805 (1018)
Q Consensus 728 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~- 805 (1018)
.+.+.+++.+...+.-+...... . +.++-++.+..+.++ +-.+.--+.+ .|+|.|.+++.+-..-+...
T Consensus 6 ~~~~~l~~~~l~ald~R~~~~~~-~----~~~~v~~vE~~v~~~----~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~ 76 (153)
T PF08146_consen 6 KNSPQLFDFFLQALDFRRQQRSK-F----DLEDVDEVESSVISA----FVSLVLKLNEATFRPLFLKLVDWATSGLPKSD 76 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHhccc-c----CHHHHHHHHHHHHHH----HHHHHHHcccchhHhHHHHHHHHHcccCCccc
Confidence 45556666666666544322110 0 011112233334433 3333334444 89999999988876644432
Q ss_pred -CCccchh-hhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcCCCC----------hHHHHHHHHHHHHHHhhc
Q 001749 806 -RPLQDRT-MVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPD----------AMNRRNAAFCVGELCKNG 866 (1018)
Q Consensus 806 -~~~~~r~-~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~----------~~vr~~a~~~lg~l~~~~ 866 (1018)
.....|. .-...+..+.+....-..||+..+++...+.|...+ ..++...+.+|..+..+.
T Consensus 77 ~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~~D 149 (153)
T PF08146_consen 77 SSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNSSKTESKSKSWELWRLVLSTLQKCFLHD 149 (153)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhc
Confidence 2223354 445666778888888889999999998877765332 345555555555555443
No 276
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.60 E-value=1.9 Score=37.35 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=50.6
Q ss_pred cchHHHHHHhh-cCCChHHHHHHHHHHHHhhhhhhccccccHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHHhhc
Q 001749 117 PDLLPFLFQFS-QSEQEEHREVALILFSSLTETIGQTFRPHFAD--MQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (1018)
Q Consensus 117 ~~ll~~l~~~~-~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~ 189 (1018)
-+++..|.+.+ .+.++.....|+.=++.++...|.. ...+.. .-..+.+.+++ ++++||..|+.|+..++.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 45677777777 3456667777888888888887643 222333 35677888888 999999999999988764
No 277
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=88.55 E-value=52 Score=37.80 Aligned_cols=285 Identities=13% Similarity=0.132 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccc-cHHHHHHHHHHhcCCCCC
Q 001749 95 VRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP-HFADMQALLLKCLQDETS 173 (1018)
Q Consensus 95 vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~d~~~ 173 (1018)
+-..++..+..++... +...|+++=.+|++.+-+++.-..+.++.+..-++++...++-. ++..+..++ +.+.. +
T Consensus 244 lY~~vl~~Lctfi~~~-~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Li-k~lp~-~- 319 (559)
T PF14868_consen 244 LYQHVLVHLCTFIASL-SPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLI-KSLPS-S- 319 (559)
T ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-HHcCC-c-
Confidence 3344555555554433 33599999999999999999888999999988888776655433 444444444 34433 1
Q ss_pred HHHHHHHH-HHHHHhhcccCChhhHHHHHhhHHH-------HHHH-HHHHhhcCCHHHHHHHHHHHH--------HHhc-
Q 001749 174 NRVRIAAL-KAIGSFLEFTNDGAEVVKFREFIPS-------ILNV-SRQCLASGEEDVAVIAFEIFD--------ELIE- 235 (1018)
Q Consensus 174 ~~vr~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~-------ll~~-l~~~l~~~~~~~~~~a~~~l~--------~l~~- 235 (1018)
..+...+ ..+.++.....+.....-...+-|. +++. ..+.+. ++.+..+.+-+. ...+
T Consensus 320 -~~~~~~L~~LL~Rl~~~m~~~~q~~~v~~f~p~~~~~n~~lw~~~~~~~L~---~~lr~~~~~~i~~~~~~~~~~~~~~ 395 (559)
T PF14868_consen 320 -SYQLINLSILLRRLFFLMAPDHQSEFVQDFSPSAETENLLLWEGFPLNALS---DELRKQIVQEIFTLCFAFCQKWLSP 395 (559)
T ss_pred -chhHhhHHHHHHHHHHhcCHHHHHHHHHhcCccccccchHHHHhccHHhCC---HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233222 2345555554322111111112221 1111 112221 122222111111 1111
Q ss_pred --CCccchhHhHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHHHHHh-HHHhhhcCChHHHHHHHhhhhccCCCCCCC
Q 001749 236 --SPAPLLGDSVKSIVHFSLEVSSSH--NLEPNTRHQAIQIISWLAKYK-YNSLKKHKLVIPILQVMCPLLAESNEAGED 310 (1018)
Q Consensus 236 --~~~~~~~~~~~~li~~l~~~~~~~--~~~~~~r~~a~~~l~~~~~~~-~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d 310 (1018)
.....+..... .+..++..+... ..+..-+...++++..+-... .+...+.+++...+..+++
T Consensus 396 ~~~s~g~l~~~~~-~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~----------- 463 (559)
T PF14868_consen 396 SSCSLGELGQLNF-ALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLS----------- 463 (559)
T ss_pred CCcCcchHhHHHH-HHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHH-----------
Confidence 01111111111 111222333222 122222222333333222211 1111222232332222222
Q ss_pred CCCcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhh-cCCChhHHHHHHHHHHHHhhcC-hHHHH-HhHHHHHHHHHhhc
Q 001749 311 DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGC-AEWMK-EKLESVLHIVLGAL 387 (1018)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~-~~~~~-~~l~~l~~~l~~~l 387 (1018)
.++.+...+..+.+..++-.+...+ .++....|-+.+..++.+++.. +.... +..+.+....-..|
T Consensus 464 -----------l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL 532 (559)
T PF14868_consen 464 -----------LLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLL 532 (559)
T ss_pred -----------HHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHh
Confidence 2222223333444445555555555 3344457778888888888743 22222 34556666666677
Q ss_pred CCCChhHHHHHHHHHHHhHhhcC
Q 001749 388 RDPEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 388 ~d~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
.|.++.++.-|+.+.+.+++...
T Consensus 533 ~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 533 ADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred cCCcHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999998753
No 278
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=88.46 E-value=32 Score=35.31 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=48.2
Q ss_pred HHHHHHHhhcCCCChh-HHHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 001749 378 SVLHIVLGALRDPEQF-VRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (1018)
Q Consensus 378 ~l~~~l~~~l~d~~~~-Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (1018)
.++..+.+.++..++. .-..||.=++++.+..++. ...+ -..=..+++.+++++++|+-.|.+|+..++..
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 5666777777655554 3446777788888776542 2211 13445667788899999999999999887643
No 279
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.23 E-value=7.7 Score=37.61 Aligned_cols=86 Identities=16% Similarity=0.276 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc
Q 001749 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (1018)
Q Consensus 160 l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 239 (1018)
.++-+.++..+ ++..+|..|++.+..+++..=-+ -...+|.++.. ..++++.++..|...+..+.+.++.
T Consensus 9 yl~~Il~~~~~-~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL----~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLS-SDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIAL----ETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhh----hCCCChHHHHHHHHHHHHHHHHhHH
Confidence 34444555556 78899999999999888754211 13477777774 5678999999999999999999988
Q ss_pred chhHhHHHHHHHHHHH
Q 001749 240 LLGDSVKSIVHFSLEV 255 (1018)
Q Consensus 240 ~~~~~~~~li~~l~~~ 255 (1018)
++...+.+-+...++.
T Consensus 79 ~v~~~~~~gi~~af~~ 94 (187)
T PF12830_consen 79 LVESRYSEGIRLAFDY 94 (187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877776666655543
No 280
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.94 E-value=56 Score=37.45 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh------HHHHHhHHHHHHHHHhhcCCC
Q 001749 317 RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA------EWMKEKLESVLHIVLGALRDP 390 (1018)
Q Consensus 317 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~------~~~~~~l~~l~~~l~~~l~d~ 390 (1018)
+.....+..+++-.|.-.+.. +..+.+.+.+.+...|++.+.+.+.+.+... +.+...+..++..+...+.|.
T Consensus 280 k~islFl~kls~l~p~i~lrq-~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~ 358 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQ-YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT 358 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHH-HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc
Confidence 444566677776655433322 3455677899999999999999999887542 334446778899999999999
Q ss_pred ChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 001749 391 EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (1018)
Q Consensus 391 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (1018)
+|.+|..|+..+..++..-.. ....-..+...+...++|.+..||..|.+.+..+.-.
T Consensus 359 ~py~RtKalqv~~kifdl~sk-~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 359 YPYTRTKALQVLEKIFDLNSK-TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred chHHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 999999999999998865321 1223457888889999999999999999998887643
No 281
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=87.46 E-value=3.9 Score=33.49 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001749 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE 232 (1018)
Q Consensus 158 ~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~ 232 (1018)
..++..+...+.+.++.+||...+.|+..++.... ..+..=.+.+++++.....+++++....|++++..
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~-----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRG-----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH-----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 45666666766654789999999999999998763 34456678888888888888888889999888753
No 282
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.39 E-value=82 Score=38.73 Aligned_cols=129 Identities=13% Similarity=0.190 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhcChHHHHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCC
Q 001749 353 YREAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431 (1018)
Q Consensus 353 ~r~aal~~l~~l~~~~~~~~~~~l~~l~~-~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~ 431 (1018)
.|...+.......+...+.+...+..++. .++...+|-.+.+|..++..||.++...+..+.. ...+..+-=.|.|.
T Consensus 261 arle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk 338 (1048)
T KOG2011|consen 261 ARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDK 338 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecC
Confidence 36677777776666666666666666666 4556678999999999999988888777654321 23444555577899
Q ss_pred ChHHHHHHHHHHHHHHhhh--ccccccchHHHHHHHHHhh-cCCCHhHHHHHHHH
Q 001749 432 SDEVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAAL-ENSPRNLQETCMSA 483 (1018)
Q Consensus 432 ~~~v~~~a~~al~~l~~~~--~~~~~~~~~~l~~~l~~~l-~~~~~~vr~~al~a 483 (1018)
+..||..+..+|..+.+.- ...+..|....=.+++... .+.+..||...+..
T Consensus 339 ~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~ 393 (1048)
T KOG2011|consen 339 NGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVL 393 (1048)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 9999999999999998873 2234456666666666666 33355666555543
No 283
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.25 E-value=6.9 Score=35.50 Aligned_cols=98 Identities=9% Similarity=0.087 Sum_probs=68.8
Q ss_pred cCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccch--HHHHHH
Q 001749 387 LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGK 464 (1018)
Q Consensus 387 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~l~~~ 464 (1018)
+..+++..-...|..+.. .. ..-...+..+.+.++++++.++..|+..|..+++++|..+...+ ..++..
T Consensus 14 l~~~dw~~ileicD~In~--~~------~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~e 85 (139)
T cd03567 14 NREEDWEAIQAFCEQINK--EP------EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNE 85 (139)
T ss_pred CCCCCHHHHHHHHHHHHc--CC------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHH
Confidence 445566555444444432 11 12235777888899999999999999999999999988664322 246666
Q ss_pred HHHhhcC------CCHhHHHHHHHHHHHHHHHhh
Q 001749 465 LLAALEN------SPRNLQETCMSAIGSVAAAAE 492 (1018)
Q Consensus 465 l~~~l~~------~~~~vr~~al~al~~l~~~~~ 492 (1018)
+.+++.. .+..|+..++..+-.-+...+
T Consensus 86 l~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 86 LIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6666642 478999999999988887765
No 284
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=87.03 E-value=0.61 Score=38.27 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHhhcChhhhhhhhHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHhhHHHHHhcCCHHHHHHHHh
Q 001749 934 ESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAA 1013 (1018)
Q Consensus 934 e~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1013 (1018)
.+..+.-+|+.++...+=.+-+.+|.++..++....+ ....+..+-+.+..|.+.+.+.|..--..+++++.+.|+.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~---~~~I~~tvk~tl~eFkrtH~D~W~~~~~~Ft~~ql~~l~~ 81 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND---PQPIRTTVKKTLSEFKRTHQDTWHEHKKKFTEDQLEDLED 81 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS----SSHHHHTHHHHHHHHHHTSTTHHHHGGG--SSTTGGGSS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC---CchHHHHHHHHHHHHHHhCcccHHHHHHhCCHHHHHHHHc
Confidence 4556777888888755545667899999998888653 4568888999999999999999988788899998888876
Q ss_pred h
Q 001749 1014 F 1014 (1018)
Q Consensus 1014 ~ 1014 (1018)
+
T Consensus 82 ~ 82 (90)
T PF11919_consen 82 V 82 (90)
T ss_dssp -
T ss_pred C
Confidence 6
No 285
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=86.85 E-value=13 Score=33.65 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH-H-HHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhh
Q 001749 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA-E-RVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (1018)
Q Consensus 458 ~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~-~-~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~ 535 (1018)
....+..|.+-++++++.++..|+..+..++..+|..|...+ . .++.-+.+++.........+|.++++.+...+..+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 356788888888999999999999999999999999876554 2 45555666665432334567888999998888877
Q ss_pred hh
Q 001749 536 GR 537 (1018)
Q Consensus 536 g~ 537 (1018)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 54
No 286
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=53 Score=41.73 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=83.0
Q ss_pred HhhhcCCChhHHHHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHH
Q 001749 343 SVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL 421 (1018)
Q Consensus 343 ~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l 421 (1018)
.+.+...|...|.-|+..++.+..... +.....++.......+...|.++.||.+....+..+...++..+.+|++.++
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li 126 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLI 126 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 344566788899999999988887543 3333345555556667778999999999999999999999988999999999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHh
Q 001749 422 PCILNALEDESDEVKEKSYYALAAFCE 448 (1018)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (1018)
|..+-...|....|...|...+.....
T Consensus 127 ~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 127 PPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hhhhheecccchHHHHHHHHHHHhhcC
Confidence 999998888887777777766665443
No 287
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.55 E-value=41 Score=34.48 Aligned_cols=194 Identities=12% Similarity=0.113 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcC--ChHHHHHHHhhhhccCCCCCCC-CCCcHHHHHH
Q 001749 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHK--LVIPILQVMCPLLAESNEAGED-DDLAPDRAAA 320 (1018)
Q Consensus 244 ~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~--~~~~i~~~l~~~l~~~~~d~~d-~~~~~~~~a~ 320 (1018)
.++.+-+.+++-+.+. ..-..+++++..++......+.... -+.-.+-..+|++...-|+... .........+
T Consensus 61 ~f~Glq~Ll~KGL~Ss----~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A 136 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSS----STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA 136 (262)
T ss_pred CchhHHHHHhCccCCC----CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH
Confidence 4444444444433322 2345667777777764433332222 2222333445555443221110 0012233445
Q ss_pred HHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHH-HhHHHHHHHHHhhcCCCChhHHHHHH
Q 001749 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK-EKLESVLHIVLGALRDPEQFVRGAAS 399 (1018)
Q Consensus 321 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~l~~~l~~~l~d~~~~Vr~~a~ 399 (1018)
..|..++...+..-+..++... .+.. .+.+..-+ .+++....+.+- .+--+++.+++..|.++-+-+|..++
T Consensus 137 ~~La~~a~~~~~~~La~il~~y---a~~~-fr~~~dfl---~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 137 EALAQVAEAQGLPNLARILSSY---AKGR-FRDKDDFL---SQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHHHHHHhCCCccHHHHHHHH---HhcC-CCCHHHHH---HHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 6777777666644444444432 2221 12222222 222222222222 33356778888889889999999999
Q ss_pred HHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcc
Q 001749 400 FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~ 452 (1018)
..|..+..+..-. .+...+++..+++.++.+.. ..|...+.......+.
T Consensus 210 ~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 210 QILKVLLPHVDMR-SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHhccccCC-CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhccc
Confidence 9999998776432 34667888888888887643 5567777766665543
No 288
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=86.45 E-value=2.9 Score=35.60 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=53.8
Q ss_pred HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHH-HHHhhhhHHHHHHHhccCC
Q 001749 370 EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDE 431 (1018)
Q Consensus 370 ~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~ 431 (1018)
+.+.++.+.++.++..++.+-.+.||..++..+.-+.+++++. +..+...+++..+..+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4677899999999999999999999999999999999999887 5677788888877777644
No 289
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.38 E-value=10 Score=34.22 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=61.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHhccCCC--hHHHHHHHHHHHHHHhhhcc
Q 001749 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 377 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~ 452 (1018)
...+..|.+.|.++++.|+..|+..+..++..++..+...+ ..++..+.+.+.++. +.|+..+...+......++.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 35677888999999999999999999999999998775432 567787777777643 34999999999998888854
No 290
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=86.03 E-value=23 Score=32.42 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHhccCCC-h-H--HHHHHHHHHHHHHhhh
Q 001749 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDES-D-E--VKEKSYYALAAFCEDM 450 (1018)
Q Consensus 377 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~-~-~--v~~~a~~al~~l~~~~ 450 (1018)
...+..|.+.|.++++.++..|+..+..++..+++.+...+ ..++..+.+.+.+.. . . |+..+...+......+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999988776533 567777777665432 2 2 8999999999888888
Q ss_pred c
Q 001749 451 G 451 (1018)
Q Consensus 451 ~ 451 (1018)
+
T Consensus 121 ~ 121 (140)
T PF00790_consen 121 K 121 (140)
T ss_dssp T
T ss_pred C
Confidence 3
No 291
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=85.29 E-value=1.4 Score=30.14 Aligned_cols=41 Identities=27% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 001749 360 AIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFAL 402 (1018)
Q Consensus 360 ~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l 402 (1018)
+++.+.+..+..+. .+.+...+...+.|+++.||.+|..++
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34555554433322 247788999999999999999998653
No 292
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.13 E-value=9.5 Score=35.68 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=85.6
Q ss_pred CcHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHh--HHHHHHHHHhhcC--
Q 001749 313 LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALR-- 388 (1018)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~--l~~l~~~l~~~l~-- 388 (1018)
.+.|..+.-++.++-...++..-..+-.++...+...+....-.++.++..+..+.++..... -+.+++.+.+...
T Consensus 19 ~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~ 98 (157)
T PF11701_consen 19 EEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRK 98 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-C
T ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 357888888877776555555555666677777766555577778888888888877655443 2355666666666
Q ss_pred CCChhHHHHHHHHHHHhHhhcCHHHHH-hhhhHHHHHHHhcc-CCChH-HHHHHHHHHH
Q 001749 389 DPEQFVRGAASFALGQFAEYLQPEIVS-HYESVLPCILNALE-DESDE-VKEKSYYALA 444 (1018)
Q Consensus 389 d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~~l~-~~~~~-v~~~a~~al~ 444 (1018)
.++..++.+++.++..-|.. ..... ..+..++.|-+.+. ++++. +|..|+-+|.
T Consensus 99 ~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 99 SKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp TS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 67888999999999887755 33333 34666777777774 44445 6766665553
No 293
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.91 E-value=4.5 Score=33.13 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC--CCCccchHHHHHHhhcCCChHHHHHHHHHHHH
Q 001749 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSS 144 (1018)
Q Consensus 75 ~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~ 144 (1018)
.+..+...+...+.+.++..+|..+-+|+..+...... +..|+.++..+.....+++......|+.++..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 44555555555556557889999999999988763221 36899999999999998888888888888764
No 294
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.85 E-value=53 Score=34.16 Aligned_cols=110 Identities=10% Similarity=0.132 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh-hHHHHHHHhccCC-C-hHHHHHHHHHHHHHHhhhcc
Q 001749 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDE-S-DEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 376 l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~~l~~~-~-~~v~~~a~~al~~l~~~~~~ 452 (1018)
++.++....+. ..+|.|...++.++.-++-..+..-...++ ..-...++.++-. . ..||..+|+.+.+++....+
T Consensus 330 ~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 330 LDKIITLALRH--SDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred hHHHHHHHHHc--CCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555555544 347788889999999998776554433332 2333444555532 2 35899999999999988877
Q ss_pred ccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 001749 453 EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (1018)
Q Consensus 453 ~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l 487 (1018)
.-.+++..=++.|+..-...++..+..+-.++-.+
T Consensus 408 ~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 408 NRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 77788887778888777777776666665555443
No 295
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.75 E-value=1.2e+02 Score=38.20 Aligned_cols=248 Identities=13% Similarity=0.165 Sum_probs=120.4
Q ss_pred CHHHHHHHHHHHHHHHcccCC--CCCccchHHHHHHhhcCC---ChHHHHHHHHHHHHhhhhhhcccc-ccHHHHHHHHH
Q 001749 92 SAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSE---QEEHREVALILFSSLTETIGQTFR-PHFADMQALLL 165 (1018)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~~~s~---~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l~ 165 (1018)
...+|..--.++-.|....+. -..|+.++..+-...... ..+....|+.+|.-++.++-..+. ..+..++..+.
T Consensus 855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~ 934 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL 934 (1610)
T ss_pred cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence 344444444555554432211 134999888888766654 345566788888888776543332 23444555444
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhH
Q 001749 166 KCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV 245 (1018)
Q Consensus 166 ~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 245 (1018)
..-....+..+-..|+..+-.+-.+... +....++........+.+.. +.. .+-.+
T Consensus 935 ~fs~QktdlNISltAi~lfWtvsDfl~~-------------------km~S~sed~~~~~~~e~~~s--s~~---~~~~l 990 (1610)
T KOG1848|consen 935 VFSRQKTDLNISLTAIGLFWTVSDFLKN-------------------KMFSTSEDSCAYNSVEDLYS--SMK---SKEIL 990 (1610)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHHHh-------------------hhhccchhhhhhcchhhhcc--ccc---chhhh
Confidence 4433223444544554333222222210 00011111111111111111 000 01111
Q ss_pred HH-----HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccC--------CCCCCCCC
Q 001749 246 KS-----IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAES--------NEAGEDDD 312 (1018)
Q Consensus 246 ~~-----li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--------~~d~~d~~ 312 (1018)
++ ++..+.+.+.+ .-.+||..|...+-.+...++..+.+.-+-.-+...++|+|... ..++..++
T Consensus 991 ~e~lwi~ll~~L~~~~~d--sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkq 1068 (1610)
T KOG1848|consen 991 PEVLWIMLLVHLADLCED--SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQ 1068 (1610)
T ss_pred hhHHHHHHHHHHHHHhcc--chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhh
Confidence 11 12222234433 35689999998877777655544433334445667788887622 11111112
Q ss_pred CcHHHHHHHHHHHHHHHcc------------hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhc
Q 001749 313 LAPDRAAAEVIDTMALNLA------------KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (1018)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~------------~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 367 (1018)
|+. ...-.++.++..++ -.+...++.++.....+.+....-+++.++..+.-+
T Consensus 1069 wte--t~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1069 WTE--TSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hhh--hhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 211 11222333332222 245567888888888888888999999888776653
No 296
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.37 E-value=39 Score=33.47 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCC---ccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHh
Q 001749 222 VAVIAFEIFDELIESP---APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMC 298 (1018)
Q Consensus 222 ~~~~a~~~l~~l~~~~---~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~ 298 (1018)
....++..|..++.+. ..|++.++|-.+-.++.........+..|..++.++..++++....+.+.-.-..+++.++
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3455666666666553 4466777776555444444444457789999999999999876655443112245677777
Q ss_pred hhhccC
Q 001749 299 PLLAES 304 (1018)
Q Consensus 299 ~~l~~~ 304 (1018)
..|...
T Consensus 175 rime~G 180 (293)
T KOG3036|consen 175 RIMESG 180 (293)
T ss_pred HHHhcc
Confidence 766544
No 297
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=84.10 E-value=92 Score=36.35 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 001749 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (1018)
Q Consensus 155 ~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~ 234 (1018)
..+..++..+.....| +=+.|+..+++.+..++...++. -..++-.+++- +.+++..+...|--.|..|.
T Consensus 300 ~ly~rfievLe~lS~D-~L~~vk~raL~ti~~lL~~kPEq-----E~~LL~~lVNK----lGDpqnKiaskAsylL~~L~ 369 (988)
T KOG2038|consen 300 ILYFRFIEVLEELSKD-PLEEVKKRALKTIYDLLTNKPEQ-----ENNLLVLLVNK----LGDPQNKIASKASYLLEGLL 369 (988)
T ss_pred HHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHhCCcHH-----HHHHHHHHHHh----cCCcchhhhhhHHHHHHHHH
Confidence 3344566666665566 88899999999999998877542 23455556554 56666677777777888887
Q ss_pred cCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 001749 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (1018)
Q Consensus 235 ~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~ 278 (1018)
..+|..=.-.+..+-.+++ .+..+......|+.||..+.-
T Consensus 370 ~~HPnMK~Vvi~EIer~~F----Rpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 370 AKHPNMKIVVIDEIERLAF----RPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred hhCCcceeehHHHHHHHHc----ccCccccceeehhhhhhhhHh
Confidence 7766533334444444443 345566667788888887764
No 298
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=84.02 E-value=5.9 Score=33.75 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=54.8
Q ss_pred chHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHhhhhccCCC
Q 001749 828 PIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGES-ALKYYGDILRGLYPLFGDS 888 (1018)
Q Consensus 828 ~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~-~~~~~~~il~~L~~~l~~~ 888 (1018)
.+.||++.++.-+..++.+-.++||..|...|..+.++.|+. +..+..++++....++...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 467899999999999999999999999999999999999987 6788888999888888754
No 299
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=83.42 E-value=45 Score=32.29 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcccc
Q 001749 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (1018)
Q Consensus 79 i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~ 154 (1018)
.-+.+++...+ ++..+|..+.++++.+.+.++- .=.+.+|.++.+..++++..|..|..++..+.+..+..+.
T Consensus 9 yl~~Il~~~~~-~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLS-SDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455565554 8999999999999999987653 2245799999999999999999999999999987765443
No 300
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=82.76 E-value=4.7 Score=40.28 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHH
Q 001749 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (1018)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 415 (1018)
+...+.+.++++|++.-.|.+++.++...... ...+.++..+...+.|++..||.+..|+|..++...++...+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 56777888889999887888877665443333 456788888888999999999999999999999876554444
Q ss_pred hhh
Q 001749 416 HYE 418 (1018)
Q Consensus 416 ~~~ 418 (1018)
++.
T Consensus 193 ~l~ 195 (213)
T PF08713_consen 193 FLQ 195 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 301
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.68 E-value=1.5e+02 Score=37.81 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=103.6
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHH-
Q 001749 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE- 412 (1018)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~- 412 (1018)
.+..++|.+...+.+++-.+|.-|...+|.+.......+....+.++...+..+.|.+..||..+.....++.-..+..
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 4445677787788888999999999999998876555555556788888889999999999999888877765332110
Q ss_pred ------------------------------H----HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhh--h-----c
Q 001749 413 ------------------------------I----VSHYESVLPCILNALEDESDEVKEKSYYALAAFCED--M-----G 451 (1018)
Q Consensus 413 ------------------------------~----~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~--~-----~ 451 (1018)
+ ..+.+.++..+.+.+.|..++||..|...|..+-++ + +
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~ 415 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGG 415 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 1 123334777778888899999999999999888774 1 2
Q ss_pred cccccchHHHHHHHHHhhcCCCHhHH
Q 001749 452 EEILPFLDPLMGKLLAALENSPRNLQ 477 (1018)
Q Consensus 452 ~~~~~~~~~l~~~l~~~l~~~~~~vr 477 (1018)
+.+.+-+.-|-..|+.++...+...|
T Consensus 416 k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 416 KEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred ccccccccccchhHHhhHhhccccHH
Confidence 34555556666677777666554444
No 302
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=82.68 E-value=79 Score=34.52 Aligned_cols=237 Identities=15% Similarity=0.123 Sum_probs=119.8
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHH-HHHHHHHhhcC-C-CChhHHHHHHHHHHHhHhhcC
Q 001749 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALR-D-PEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~l~~~l~~~l~-d-~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
.+..+.+.+...+-+++..+|.+++.++..+...... +..... ++=-++...|. | .+..=|.+|+..+.++.+.-+
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~ 100 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK 100 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC
Confidence 4455556665555455589999999999887765421 111111 11124455554 2 345568899999999987632
Q ss_pred HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHH
Q 001749 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (1018)
Q Consensus 411 ~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~ 490 (1018)
.....-..++..++....+++++.|..|..++.+++-..++-+. .. .-+..+.+.+.++...+.+..+.++-.+...
T Consensus 101 -~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~-~~-gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 101 -GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA-EC-GGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred -CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH-Hc-CCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 11223357788888888888888999999988888765443211 01 1123333333333333444444444444433
Q ss_pred hhc--cchhhH--HHHHHHHHHHH--hccCchhh-hhHHHHHHHHHHHHHhh-hhhhcCCChHHHHHHHHhccCCCChhH
Q 001749 491 AEQ--AFIPYA--ERVLELLKIFM--VLTNDEDL-RSRARATELLGLVAESV-GRARMEPILPPFVEAAISGFGLEFSEL 562 (1018)
Q Consensus 491 ~~~--~~~~~~--~~i~~~l~~~l--~~~~~~~~-~~r~~a~~~l~~l~~~~-g~~~~~~~~~~l~~~l~~~l~~~~~~~ 562 (1018)
... .+.+.+ +.++..+...- ...++.+. +++. +..++..+-+.- |--.+...--.-+..++..+..+.+++
T Consensus 178 p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~-s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~i 256 (371)
T PF14664_consen 178 PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQA-SAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEI 256 (371)
T ss_pred cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHH-HHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHH
Confidence 221 112211 11222111110 00111111 2222 223333333321 111111111134555666677778888
Q ss_pred HHHHHHHHHHHHH
Q 001749 563 REYTHGFFSNIAG 575 (1018)
Q Consensus 563 ~~~~~~~l~~l~~ 575 (1018)
|+.++..+-.+..
T Consensus 257 r~~Ildll~dllr 269 (371)
T PF14664_consen 257 RKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHHHHC
Confidence 8888776665543
No 303
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=82.67 E-value=37 Score=33.74 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcCCHHHHH
Q 001749 18 DARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRR 97 (1018)
Q Consensus 18 ~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~ 97 (1018)
..|+-|.+...+.... +-...++.-+-.+..-+.|.+|+.++...... .+.+ ....+-..+..-.++.+..
T Consensus 34 ~lr~lak~~~~~~~~~-~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~----~~~~----~~~~~~~~~~~~~~W~~~D 104 (213)
T PF08713_consen 34 DLRKLAKDIYKELKLS-EELYELADELWESGYREERYLALLILDKRRKK----LTEE----DLELLEKWLPDIDNWATCD 104 (213)
T ss_dssp HHHHHHHHHHHHHCTS-HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG------HH----HHHHHHHCCCCCCCHHHHH
T ss_pred HHHHHHHHHHhhcccc-hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhh----hhHH----HHHHHHHHhccCCcchhhh
Confidence 3444444444444444 22223333333455678888888888654321 2222 2222222222335676666
Q ss_pred HH-HHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHH
Q 001749 98 AS-ANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRV 176 (1018)
Q Consensus 98 ~~-~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~v 176 (1018)
.+ ..+++.+.... +.+.+.+.+++.|++.-.|..|+.++...... ...+.++..+...+.| ++.-|
T Consensus 105 ~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d-~~~~v 171 (213)
T PF08713_consen 105 SLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKD-EEYYV 171 (213)
T ss_dssp HHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTG-S-HHH
T ss_pred HHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCC-chHHH
Confidence 66 44445544321 77899999999999988888877665443332 5667888888888888 88999
Q ss_pred HHHHHHHHHHhhccc
Q 001749 177 RIAALKAIGSFLEFT 191 (1018)
Q Consensus 177 r~~a~~~l~~~~~~~ 191 (1018)
|.+..++|..+....
T Consensus 172 q~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 172 QKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999988876654
No 304
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.40 E-value=6.3 Score=34.26 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHh
Q 001749 378 SVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1018)
Q Consensus 378 ~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (1018)
.++..+...|. +.++.+...||.=||.++.+.+. ....+ -..-..+++.+.++++.||..|..|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45666666663 44788888999999999998743 23333 2345667888899999999999999998764
No 305
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=82.30 E-value=82 Score=34.42 Aligned_cols=214 Identities=14% Similarity=0.149 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCc---cchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHH
Q 001749 218 GEEDVAVIAFEIFDELIESPA---PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPIL 294 (1018)
Q Consensus 218 ~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~ 294 (1018)
++.+++..+++++-.+..... .+.+-+++.++-. .+..+...+.-|.+|+.++..+.+..... ..+-..++
T Consensus 37 ~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~---SL~~~~~~~~ER~QALkliR~~l~~~~~~---~~~~~~vv 110 (371)
T PF14664_consen 37 DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIR---SLDRDNKNDVEREQALKLIRAFLEIKKGP---KEIPRGVV 110 (371)
T ss_pred CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHh---hhcccCCChHHHHHHHHHHHHHHHhcCCc---ccCCHHHH
Confidence 448889999998877765431 1222233333332 22333335567999999999998763210 01334455
Q ss_pred HHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchh-----chHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh
Q 001749 295 QVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH-----VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA 369 (1018)
Q Consensus 295 ~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 369 (1018)
..++....+.+ +..+..+.+++-.++-..|+- -+..++.. +.+.....-...+.++-.+.+...
T Consensus 111 ralvaiae~~~-------D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~----l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 111 RALVAIAEHED-------DRLRRICLETLCELALLNPELVAECGGIRVLLRA----LIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred HHHHHHHhCCc-------hHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHH----HHhccHhHHHHHHHHHHHHhCCcc
Confidence 55555554422 367777788877777555531 12233333 222222244444455544444321
Q ss_pred --HHHHHh--HHHHHHHHHhh----cCCCCh-hHHHHHHHHHHHhHhhcCHHHH-Hhhh-hHHHHHHHhccCCChHHHHH
Q 001749 370 --EWMKEK--LESVLHIVLGA----LRDPEQ-FVRGAASFALGQFAEYLQPEIV-SHYE-SVLPCILNALEDESDEVKEK 438 (1018)
Q Consensus 370 --~~~~~~--l~~l~~~l~~~----l~d~~~-~Vr~~a~~~l~~l~~~~~~~~~-~~~~-~~l~~l~~~l~~~~~~v~~~ 438 (1018)
..+.+. ++.++..+... ..+.+. ..-..+..++..+....+.-+. ..-+ .-+..++..|.-+++++|..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 222221 33444333333 222221 1233444455554443322111 0111 45677777777787777777
Q ss_pred HHHHHHHHHh
Q 001749 439 SYYALAAFCE 448 (1018)
Q Consensus 439 a~~al~~l~~ 448 (1018)
....+-.+.+
T Consensus 260 Ildll~dllr 269 (371)
T PF14664_consen 260 ILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHC
Confidence 6666666554
No 306
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.29 E-value=28 Score=30.67 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhh---hHHHHHHHhcc--CC------ChHHHHHHHHHHH
Q 001749 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE---SVLPCILNALE--DE------SDEVKEKSYYALA 444 (1018)
Q Consensus 376 l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~---~~l~~l~~~l~--~~------~~~v~~~a~~al~ 444 (1018)
...++.+|.+.|++.++.|+.-++.+|..++....+.+...+. .++..+.+.-. |+ ...||..|-.++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 4578899999999999999999999999999988777765443 33333333222 21 2358888888877
Q ss_pred HHHh
Q 001749 445 AFCE 448 (1018)
Q Consensus 445 ~l~~ 448 (1018)
.+..
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 6653
No 307
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=82.00 E-value=4.6 Score=33.59 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=46.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcC--CChhHHHHHHHHHHHHhh
Q 001749 310 DDDLAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQN--ASPKYREAAVTAIGIISE 366 (1018)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~--~~~~~r~aal~~l~~l~~ 366 (1018)
++.|..|+.|+..+..++..++ ..+-+.+...+.+.+.+ ..+..+++|+..+..++.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 5679999999999999999988 34557777777777664 467899999999998854
No 308
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=81.82 E-value=23 Score=32.40 Aligned_cols=113 Identities=10% Similarity=0.025 Sum_probs=72.7
Q ss_pred hhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHH
Q 001749 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVL 421 (1018)
Q Consensus 345 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l 421 (1018)
.+..+||..--..+..+..=.. .-...+..|.+.+. ++++.|...|+..+..++..+|..+...+ ..++
T Consensus 13 ~l~~~dw~~ileicD~In~~~~--------~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 13 SLQSEDWGLNMEICDIINETED--------GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCCcCHHHHHHHHHHHhCCCC--------cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 3455677554444444432111 12356677777776 57999999999999999999998775432 4667
Q ss_pred HH-HHHhccC---CChHHHHHHHHHHHHHHhhhccc-cccchHHHHHHH
Q 001749 422 PC-ILNALED---ESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKL 465 (1018)
Q Consensus 422 ~~-l~~~l~~---~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~l~~~l 465 (1018)
.. |.+.+.. ....|+..+...+......++.. -.+++..+...|
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEEL 133 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Confidence 66 6666653 33579999999999999888543 123444444333
No 309
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=81.50 E-value=2.5 Score=34.74 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHH
Q 001749 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (1018)
Q Consensus 352 ~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 413 (1018)
..|++++++|+++....+-.+-++++.++..+.+..+| ...|+.++-.+++.+=..-....
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 57899999999999998877777899999998888887 66788888899998876554444
No 310
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=80.81 E-value=36 Score=31.11 Aligned_cols=80 Identities=9% Similarity=0.072 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhhcC-CCHhHHHHHHHHHHHHHHHhhccchhhH--HHHHHH-HHHHHhccCchhhhhHHHHHHHHHHHHH
Q 001749 458 LDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLEL-LKIFMVLTNDEDLRSRARATELLGLVAE 533 (1018)
Q Consensus 458 ~~~l~~~l~~~l~~-~~~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~~~~~~~~r~~a~~~l~~l~~ 533 (1018)
-...+..+.+-++. .++.+...|+..+..++..+|..|-... ..++.- |..++.........++.++++.+...+.
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 34677777777764 5788999999999999999998887655 346664 6666653322334577888888888887
Q ss_pred hhhh
Q 001749 534 SVGR 537 (1018)
Q Consensus 534 ~~g~ 537 (1018)
+++.
T Consensus 116 ~f~~ 119 (141)
T cd03565 116 AFRG 119 (141)
T ss_pred HhCC
Confidence 7754
No 311
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.05 E-value=86 Score=38.56 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=79.4
Q ss_pred CCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHH
Q 001749 129 SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (1018)
Q Consensus 129 s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll 208 (1018)
+-.+..|..++.-|+.++..+|..|. -...+..+--.|+| .+..||..+++++-.+++..... ..+..+...+=
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~Fl--~dsYLKYiGWtLsD-k~~~VRl~~lkaL~~L~e~~~~~---~~L~lFtsRFK 371 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEIFL--SDSYLKYIGWTLSD-KNGTVRLRCLKALIKLYEKDEDK---DKLELFTSRFK 371 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHHHh--cchHHHHhcceeec-CccHHHHHHHHHHHHHHhccccc---hHHHHHHHHHH
Confidence 45678999999999999999886552 23456666677889 89999999999999998874332 22233333333
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCCccch-hHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 001749 209 NVSRQCLASGEEDVAVIAFEIFDELIESPAPLL-GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (1018)
Q Consensus 209 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~ 276 (1018)
.-+.+.. +.+.++...+......+....+.++ +.-+..+...++ +.+..++..|.+++..-
T Consensus 372 ~RIVeMa-drd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~------d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 372 DRIVEMA-DRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIY------DSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHH-hhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHh------ccCcchHHHHHHHHHHH
Confidence 3322223 3333333333333333332222222 233333444433 24667788888877543
No 312
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=78.64 E-value=6 Score=31.01 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhcChHHHHHhHH--HHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhc
Q 001749 353 YREAAVTAIGIISEGCAEWMKEKLE--SVLHIVLGALR-DPEQFVRGAASFALGQFAEYL 409 (1018)
Q Consensus 353 ~r~aal~~l~~l~~~~~~~~~~~l~--~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~ 409 (1018)
..+++++++|.++...... +.++ .+++.+++... .+...+|-.|+++++-++...
T Consensus 3 ~lKaaLWaighIgss~~G~--~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI--QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHHH--HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 5789999999998753211 1222 57777777665 789999999999999998753
No 313
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=78.34 E-value=66 Score=38.34 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=72.0
Q ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 001749 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDEL 233 (1018)
Q Consensus 154 ~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l 233 (1018)
.++-..++..+-..+.. +.-|..++..|+.++...+.......-..+++.++..+ ..|.+.-+...|+.+|..+
T Consensus 65 ~P~~K~~~~~l~~~~~~---~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L---~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 65 EPHDKHLFDKLNDYFVK---PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCL---QFDTSITVVSSALLVLIML 138 (668)
T ss_pred CccHHHHHHHHHHHHcC---chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHH---hhcccHHHHHHHHHHHHHH
Confidence 46667788888888876 36799999999999987654321222234555555543 3466777888999999999
Q ss_pred hcCCccchhHhHHHHHHHHHHHh
Q 001749 234 IESPAPLLGDSVKSIVHFSLEVS 256 (1018)
Q Consensus 234 ~~~~~~~~~~~~~~li~~l~~~~ 256 (1018)
+-+.+..+.++++.++.....++
T Consensus 139 LP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 139 LPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999998877665
No 314
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=78.22 E-value=25 Score=37.10 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=71.3
Q ss_pred hhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHh--hhhHH
Q 001749 344 VSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH--YESVL 421 (1018)
Q Consensus 344 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~--~~~~l 421 (1018)
+...+.+|...-..|..++.-.++. ...+..|.+.|++.++.|...|+..++.++..|+..+... -..+.
T Consensus 19 e~nT~enW~~IlDvCD~v~~~~~~~--------kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~ 90 (462)
T KOG2199|consen 19 EKNTSENWSLILDVCDKVGSDPDGG--------KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFT 90 (462)
T ss_pred cccccccHHHHHHHHHhhcCCCccc--------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHH
Confidence 3456778877666665554433332 3567888999999999999999999999999998766532 23455
Q ss_pred HHHHHhcc-CCChHHHHHHHHHHHHHHhhhcc
Q 001749 422 PCILNALE-DESDEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 422 ~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~ 452 (1018)
..|...+. ...++|++.....+....+.+++
T Consensus 91 ~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 91 TELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 55555555 44577888777777777777644
No 315
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=78.11 E-value=3 Score=28.60 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=28.9
Q ss_pred HHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001749 141 LFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAI 184 (1018)
Q Consensus 141 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l 184 (1018)
+++.+.+..+..+ ..+.+...+...+.| +++.||.+|+.++
T Consensus 2 ~l~~iv~~dp~ll--~~~~v~~~i~~rl~D-~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLL--DSSDVQSAIIRRLSD-SSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCcccc--chHHHHHHHHHHhcC-CChHHHHHHHHHC
Confidence 3455554444332 235788899999999 9999999998753
No 316
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=77.59 E-value=34 Score=29.94 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=51.8
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHH--HHHHHHh----hc--CCCChhHHHHHHHHHHHh
Q 001749 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES--VLHIVLG----AL--RDPEQFVRGAASFALGQF 405 (1018)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--l~~~l~~----~l--~d~~~~Vr~~a~~~l~~l 405 (1018)
....++..+...+++.+|++..-|+..+-.+..+|++.+...+.. .+..+++ .. .+.+..||..+...+..+
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 445677778888899999999999999999999998766554321 1112221 11 255889999988887765
Q ss_pred H
Q 001749 406 A 406 (1018)
Q Consensus 406 ~ 406 (1018)
+
T Consensus 114 ~ 114 (115)
T cd00197 114 A 114 (115)
T ss_pred h
Confidence 4
No 317
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.55 E-value=8.8 Score=35.92 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=76.1
Q ss_pred HHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC--C-
Q 001749 38 PALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--A- 113 (1018)
Q Consensus 38 ~~l~~~l~~-~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~--~- 113 (1018)
..++.-+.. ..++.+|..|.+++-+.+... ..+..+.+ ...++.+..+.+..-...+..+++.+...... .
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~----~~~~~~~~-~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLDAA----REEFKEKI-SDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHHHh----HHHHHHHH-HHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 344444544 567899999999998885221 11122222 22223332222122222334444444321000 0
Q ss_pred -CCccchHHHHHHhhc--CCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHH
Q 001749 114 -GEWPDLLPFLFQFSQ--SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNR-VRIAALKAIGS 186 (1018)
Q Consensus 114 -~~w~~ll~~l~~~~~--s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~-vr~~a~~~l~~ 186 (1018)
=.-+.+++.+...+. +++......++.++..-|..-... .......++.+...+...++.. +|..|+-+|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 012457777887777 677778888899988877443211 1234555677778886535565 78877766654
No 318
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.47 E-value=2.1e+02 Score=36.26 Aligned_cols=247 Identities=15% Similarity=0.208 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHhcCC-ccchhHhHHH
Q 001749 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG---EEDVAVIAFEIFDELIESP-APLLGDSVKS 247 (1018)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~---~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~ 247 (1018)
+..+||...++++.++++...+. .+.. .+.+++.+......+ ..++...++.+|.-+.... +..-...+..
T Consensus 854 ~~~evr~~sl~~l~silet~ge~----ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEH----LLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchh----hccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 67889999999999998876432 1222 455555555444333 3456677777777665432 2222334445
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHH
Q 001749 248 IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (1018)
Q Consensus 248 li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~ 327 (1018)
+++.+......+ .+-.+-..|+..+-++.++-...+.. ..+|. ++-..+..+.
T Consensus 929 lidtl~~fs~Qk-tdlNISltAi~lfWtvsDfl~~km~S-----------------~sed~---------~~~~~~e~~~ 981 (1610)
T KOG1848|consen 929 LIDTLLVFSRQK-TDLNISLTAIGLFWTVSDFLKNKMFS-----------------TSEDS---------CAYNSVEDLY 981 (1610)
T ss_pred HHHHHHHHHhhh-ccccccHHHHHHHHHHHHHHHhhhhc-----------------cchhh---------hhhcchhhhc
Confidence 555555444332 35556677777655555432221111 11100 0000111111
Q ss_pred HH------cchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHH--hHHHHHHHHHhhcC-------CC--
Q 001749 328 LN------LAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKE--KLESVLHIVLGALR-------DP-- 390 (1018)
Q Consensus 328 ~~------~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~--~l~~l~~~l~~~l~-------d~-- 390 (1018)
.. +++.+.-.++..+.+...+.-..+|.+|+..+-++.......+.+ .-.-+...+++.|. ++
T Consensus 982 ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewn 1061 (1610)
T KOG1848|consen 982 SSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWN 1061 (1610)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhc
Confidence 11 112233446666777778888899999998887776643322222 11223345555554 11
Q ss_pred ChhH----HHHHHHHHHHhHhhcCHHH---------HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 391 EQFV----RGAASFALGQFAEYLQPEI---------VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 391 ~~~V----r~~a~~~l~~l~~~~~~~~---------~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
...+ -+..+..++.++.-+...+ ...++.++..+.....+.++++..++..++.++....
T Consensus 1062 gkeiqkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1062 GKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred chhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 1122 2456777888877665443 2345666777777777888999999999998876543
No 319
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=77.16 E-value=60 Score=32.83 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHhhcccCChhhHHHHH--hhHHHHHHHHHHH---hhcC-----CHHHHHHHHHHHHHHhcCC---cc
Q 001749 173 SNRVRIAALKAIGSFLEFTNDGAEVVKFR--EFIPSILNVSRQC---LASG-----EEDVAVIAFEIFDELIESP---AP 239 (1018)
Q Consensus 173 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~ll~~l~~~---l~~~-----~~~~~~~a~~~l~~l~~~~---~~ 239 (1018)
+++.|..|+.-++.--+..++-. ..-|+ ..+..+++-+... +..+ .......|+..|..++.+. ..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La-~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLA-PLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHH-HHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchh-HHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 46778888888776655443210 11111 1122222221111 1111 1133456667777777654 34
Q ss_pred chhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhH
Q 001749 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (1018)
Q Consensus 240 ~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~ 281 (1018)
+++.+++-.+-.++........-+..|..++.+++.+++...
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~ 128 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDD 128 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCc
Confidence 555555544433333333222346788889999988886433
No 320
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=77.02 E-value=8.1 Score=32.14 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHhHh
Q 001749 348 NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP--EQFVRGAASFALGQFAE 407 (1018)
Q Consensus 348 ~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~ 407 (1018)
+.+|..|+-|...++.++....+....--+.+...+.+.+.|+ +...++.|+..|..+..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999998766544444567888888888866 55678899998888854
No 321
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=76.57 E-value=2.3e+02 Score=36.26 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH-HHHHHHHHHHHhc
Q 001749 460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA-ERVLELLKIFMVL 512 (1018)
Q Consensus 460 ~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~ 512 (1018)
.++..|++.|++.+..+..+++.+|-.+....+++-.-.. ...++.|++++..
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS 583 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS 583 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh
Confidence 5788899999988888888888888888766554321111 2245556665543
No 322
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=76.39 E-value=44 Score=43.41 Aligned_cols=140 Identities=14% Similarity=0.197 Sum_probs=89.0
Q ss_pred HHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 371 WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 371 ~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
.+..+++.++...-.++..+++.|+.-+......+...+... +-..++..|+..+.+.+..-...|..+|..++...
T Consensus 428 vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~---~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~ 504 (1426)
T PF14631_consen 428 VLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSY---CQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN 504 (1426)
T ss_dssp HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc
Confidence 445567778888888889999999999999998888877431 22567777777765555444468889999999887
Q ss_pred ccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccC
Q 001749 451 GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTN 514 (1018)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 514 (1018)
++.+.||.. .+..++..+.+-+..--..++..++.++-.....-...-+++.-++++.+...+
T Consensus 505 ~~~l~~fa~-~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~ 567 (1426)
T PF14631_consen 505 PSELQPFAT-FLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSN 567 (1426)
T ss_dssp HHHHHHTHH-HHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCc
Confidence 777877754 444455555554433334457777777654433323334666667777776553
No 323
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.95 E-value=1.1e+02 Score=32.08 Aligned_cols=272 Identities=14% Similarity=0.144 Sum_probs=132.2
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCCh-HHH
Q 001749 215 LASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLV-IPI 293 (1018)
Q Consensus 215 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~-~~i 293 (1018)
-.+++......++..|..+....|.+++-.-++++-.++. .+..+.++-...+..+...+-.. .. .+..++ ..+
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~---~~~~~~dlt~~~~~~v~~Ac~~h-E~-nrQ~~m~~~i 190 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLA---LKVESEEVTLLTLQWLQKACIMH-EV-NRQLFMELKI 190 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHh---cccchHHHHHHHHHHHHHHHHHh-HH-HHHHHHHhhH
Confidence 3456777888889999999988899887665555443332 22223444444444333222111 11 111122 245
Q ss_pred HHHHhhhhccCCCCC-------------CCCCC-cHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHH
Q 001749 294 LQVMCPLLAESNEAG-------------EDDDL-APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVT 359 (1018)
Q Consensus 294 ~~~l~~~l~~~~~d~-------------~d~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~ 359 (1018)
++++.+.+.....++ -|||. .+...+-.--..++. ...+..+.+.+..++. +..-..++.
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~---e~~l~~L~Eal~A~~d---p~~L~~l~~ 264 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK---EGILTALTEALQAGID---PDSLVSLST 264 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH---hhhHHHHHHHHHccCC---ccHHHHHHH
Confidence 666665554432210 01111 111111000111111 1122333444444443 223334445
Q ss_pred HHHHHhhcChHHHHHhHHH--HHHHHHhhcCC-CChhHHHH---HHHHHHHhHhhc--CHHHH--HhhhhHHHHHHHhcc
Q 001749 360 AIGIISEGCAEWMKEKLES--VLHIVLGALRD-PEQFVRGA---ASFALGQFAEYL--QPEIV--SHYESVLPCILNALE 429 (1018)
Q Consensus 360 ~l~~l~~~~~~~~~~~l~~--l~~~l~~~l~d-~~~~Vr~~---a~~~l~~l~~~~--~~~~~--~~~~~~l~~l~~~l~ 429 (1018)
+++.++-. +.+-..+.. =+..+++++.| ....+|.. ++..|..++-.- ...+. ...+.++........
T Consensus 265 tl~~lAVr--~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~ 342 (461)
T KOG4199|consen 265 TLKALAVR--DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSD 342 (461)
T ss_pred HHHHHHHH--HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCC
Confidence 55555432 111111111 14455666666 33445544 444444444321 11121 123444444444433
Q ss_pred CCChHHHHHHHHHHHHHHhhhccccccchH-HHHHHHHHhhcCC--CHhHHHHHHHHHHHHHHHhhccchhhHHH
Q 001749 430 DESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAER 501 (1018)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~--~~~vr~~al~al~~l~~~~~~~~~~~~~~ 501 (1018)
+|.|...++.++..++-..++.-..+++ ..-...++.+... ...++.+++..|-.++....+.-.+.+..
T Consensus 343 --~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~ 415 (461)
T KOG4199|consen 343 --DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN 415 (461)
T ss_pred --ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence 4678888999999998877665444443 2333344444443 45789999999999998887766666543
No 324
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.89 E-value=1.9e+02 Score=37.38 Aligned_cols=229 Identities=11% Similarity=0.154 Sum_probs=115.1
Q ss_pred cCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhh-hhccccc---cHHHHHHHHH
Q 001749 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET-IGQTFRP---HFADMQALLL 165 (1018)
Q Consensus 90 e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~-~~~~~~~---~~~~l~~~l~ 165 (1018)
..+..||..+.+|++.-. +..|..++..+-......+....+.++..+..+.+. +...+.. .+.+.++.+.
T Consensus 1048 s~s~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~ 1122 (1514)
T KOG0929|consen 1048 SSSAEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLE 1122 (1514)
T ss_pred cCcchhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHH
Confidence 456789999999988222 258999999988888888888888888888865544 3333332 2223333333
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhhcccCCh---h--------hHH-HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 001749 166 KCLQDETSNRVRIAALKAIGSFLEFTNDG---A--------EVV-KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDEL 233 (1018)
Q Consensus 166 ~~l~d~~~~~vr~~a~~~l~~~~~~~~~~---~--------~~~-~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l 233 (1018)
....+...+..-..+++.+...+....+. . ... -...++|.+... ...+.+...+++..+++.+-.+
T Consensus 1123 ~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~l-s~i~~~~~~~vr~~al~vlF~i 1201 (1514)
T KOG0929|consen 1123 EFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQL-SKIINDYRLEVRKRALEVLFDI 1201 (1514)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhh-hHHhhccHHHHHHHHHHHHHHH
Confidence 33322111111222222221111111110 0 001 123456655553 3333456778899999988888
Q ss_pred hcCCccchhHhH-HHHHHHHHHHhcCCCCC-------hHHHHHHHHHHHHHHHHhHHHhhhc-CChHHHHHHHhhhhccC
Q 001749 234 IESPAPLLGDSV-KSIVHFSLEVSSSHNLE-------PNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCPLLAES 304 (1018)
Q Consensus 234 ~~~~~~~~~~~~-~~li~~l~~~~~~~~~~-------~~~r~~a~~~l~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~ 304 (1018)
...++..|.+.. ..+...++.+..+-..+ +-....+...+..++.....++... ..++.++..+....+..
T Consensus 1202 l~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~ 1281 (1514)
T KOG0929|consen 1202 LKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQD 1281 (1514)
T ss_pred HHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 876655554433 33444444443322111 1122223333333333322222211 13333333333333332
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 001749 305 NEAGEDDDLAPDRAAAEVIDTMALNLA 331 (1018)
Q Consensus 305 ~~d~~d~~~~~~~~a~~~l~~l~~~~~ 331 (1018)
+ ....+.+..|+..+....|
T Consensus 1282 n-------~~la~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1282 N-------QQLARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred c-------hhhHHhHHHHHHHHHHhcc
Confidence 2 3567778888888877666
No 325
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.72 E-value=26 Score=35.93 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=70.6
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHH-HhhhhH
Q 001749 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV-SHYESV 420 (1018)
Q Consensus 342 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ 420 (1018)
+..++.+.++.+|.+|+..+..+.......+..+-...++.+...+.+..+ -..|..++.+++... .+. ..+..+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~~~ 83 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQDL 83 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHHHH
Confidence 345688899999999996665544433344444556778888888888877 445677888888763 222 234446
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 001749 421 LPCILNALEDESDEVKEKSYYALAAFCED 449 (1018)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (1018)
+..++..+.++........|..+.++.+.
T Consensus 84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 66677777777666777777777777553
No 326
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=75.46 E-value=13 Score=37.39 Aligned_cols=135 Identities=12% Similarity=0.194 Sum_probs=75.1
Q ss_pred HHHhHHHHHHHHhCCChHHHHHHHHH-HHHHhhccCC---C-ccchhhhhHhHHHHHhhcCcchHhhH--HhhHHHHHHh
Q 001749 771 AVSDLLPAFAKSMGPHFAPIFAKLFD-PLMKFAKSSR---P-LQDRTMVVATLAEVARDMGSPIAAYV--DRVMPLVLKE 843 (1018)
Q Consensus 771 ~~~~~l~~l~~~~~~~~~~~~~~l~~-~l~~~l~~~~---~-~~~r~~a~~~l~~~~~~~~~~~~~~~--~~l~~~l~~~ 843 (1018)
++..++.+++. +.+.-.+++..=+| .+.++++... + .-.|..++|++|.+++.-...+..|+ ..++|..++.
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 33455666654 34443444443222 2333443322 2 33578999999999986555555553 4899999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCc-----chhhH---HHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHH
Q 001749 844 LASPDAMNRRNAAFCVGELCKNGGE-----SALKY---YGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIM 907 (1018)
Q Consensus 844 l~~~~~~vr~~a~~~lg~l~~~~~~-----~~~~~---~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~ 907 (1018)
+..++.-.|-.|.+.+..+...... ....- +..++..++.-+. .+.+..+..+++.|.-|+..
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~-~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLV-KQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHH-HS--HHHHHHHHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHc-cCCChhHHHHHHHHHHHHcc
Confidence 9988888888899988887653210 00111 2233333322222 23456777788888877765
No 327
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.19 E-value=1.1e+02 Score=38.06 Aligned_cols=162 Identities=10% Similarity=0.043 Sum_probs=93.3
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHc--c---hhchHHHHHHHHhhhcCCChhHHHHHHHHHHH
Q 001749 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL--A---KHVFPPVFEFASVSCQNASPKYREAAVTAIGI 363 (1018)
Q Consensus 289 ~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~--~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~ 363 (1018)
..+..+..++.+.........++-..++..|..++..+-..- . .......+....+.+.++-|..|.+|.+.+++
T Consensus 776 ll~r~~~~Ll~ia~~p~~~~~~~~~~p~VHA~NvmkaIf~~~~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaA 855 (1417)
T KOG1810|consen 776 LLPRCFCKLLKIAECPLPGEWGEGDEPRVHAMNVMKAIFTSSILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAA 855 (1417)
T ss_pred hhHHHHHHHHHHhcCCCccccCCCcchhhhhHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHH
Confidence 445555555555544433333344467777888887765321 1 33445555555566777779999999988877
Q ss_pred HhhcCh-----------------HHHHHhHHHHHHHHHhhcC----C----CChh-HHHHHHHHHHHhHhhcCHHHHHhh
Q 001749 364 ISEGCA-----------------EWMKEKLESVLHIVLGALR----D----PEQF-VRGAASFALGQFAEYLQPEIVSHY 417 (1018)
Q Consensus 364 l~~~~~-----------------~~~~~~l~~l~~~l~~~l~----d----~~~~-Vr~~a~~~l~~l~~~~~~~~~~~~ 417 (1018)
+..... ..+-...+.+.|.+...|+ + .++. --+..+-.++++-..-...-.-..
T Consensus 856 Li~RvfGv~~s~~~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~~sgs~q~s~aL~piLl~LSrL~~~~~~~~~~~l 935 (1417)
T KOG1810|consen 856 LINRVFGVIRSRLCLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQLSGSEQSSLALWPILLMLSRLYPSAPRSATLGL 935 (1417)
T ss_pred HHHHHHHhhhHHhhcccccccchhhhhhcCccHHHHHHHHhhhhccCCCcccCccccHHHHHHHHHhhcccCCccccCCc
Confidence 765211 1122335566777775543 1 1111 112222233333221111101234
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
...+|.+.++....+..+|..|..++..+..+.
T Consensus 936 s~F~p~l~ect~q~~~~vRemAs~vl~~L~~~~ 968 (1417)
T KOG1810|consen 936 SVFVPFLQECTCQSNLKVREMASLVLLALVDAV 968 (1417)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 678899999888888899999999999988874
No 328
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=74.26 E-value=4.5 Score=27.23 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.7
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 001749 836 VMPLVLKELASPDAMNRRNAAFCVGELC 863 (1018)
Q Consensus 836 l~~~l~~~l~~~~~~vr~~a~~~lg~l~ 863 (1018)
.++.+++.+.+++++++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5778888888889999999999999875
No 329
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=74.09 E-value=4.7 Score=27.14 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001749 379 VLHIVLGALRDPEQFVRGAASFALGQFA 406 (1018)
Q Consensus 379 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 406 (1018)
.++.+.+.+.++++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667777778889999999999999886
No 330
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.89 E-value=21 Score=36.56 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=58.6
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc--cccccch
Q 001749 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--EEILPFL 458 (1018)
Q Consensus 381 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~--~~~~~~~ 458 (1018)
..+...+.+++|.||.+|..-+..+...-...+..+-...++.+.+.+.+..+ ...|+.++.++....+ +.+ +
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l---l 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL---L 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH---H
Confidence 34667788999999999998777776553334445667888889988888766 4567778888876542 211 2
Q ss_pred HHHHHHHHHhhcCCCH
Q 001749 459 DPLMGKLLAALENSPR 474 (1018)
Q Consensus 459 ~~l~~~l~~~l~~~~~ 474 (1018)
..++..++..+.++..
T Consensus 81 ~~~~k~l~~~~~~p~~ 96 (353)
T KOG2973|consen 81 QDLLKVLMDMLTDPQS 96 (353)
T ss_pred HHHHHHHHHHhcCccc
Confidence 2244444544444433
No 331
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=73.38 E-value=26 Score=32.63 Aligned_cols=100 Identities=15% Similarity=0.300 Sum_probs=52.7
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHH----hhhhHHHHHHHhccCCChHHHHHHHHHHHHHH-hhhcccc
Q 001749 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS----HYESVLPCILNALEDESDEVKEKSYYALAAFC-EDMGEEI 454 (1018)
Q Consensus 380 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~-~~~~~~~ 454 (1018)
=|.++.+|..... .......|+++..+...++-. .+..+...++..- ... ..+|...+..+. .-.++.+
T Consensus 5 kplLIsCL~~q~~--k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e---~~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 5 KPLLISCLTMQET--KESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENE---PVKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred HHHHHHHHHhhcc--cHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccc---hHHHHHHHHhCCchhhhhHH
Confidence 3556666653322 234455566655554333322 2233333333211 111 245666666665 3346778
Q ss_pred ccchHHHHHHHHHhhcCCC-HhHHHHHHHHHH
Q 001749 455 LPFLDPLMGKLLAALENSP-RNLQETCMSAIG 485 (1018)
Q Consensus 455 ~~~~~~l~~~l~~~l~~~~-~~vr~~al~al~ 485 (1018)
.|+++.+++.+.+.|.++. ..+....+..-|
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~ 110 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTG 110 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHH
Confidence 8999999999999998873 344433443333
No 332
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.29 E-value=51 Score=29.07 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=51.8
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHH---HHHHHHhhcC--------CCChhHHHHHHHHH
Q 001749 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES---VLHIVLGALR--------DPEQFVRGAASFAL 402 (1018)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~---l~~~l~~~l~--------d~~~~Vr~~a~~~l 402 (1018)
.+..++.++...+++.++.++.-++..|..++...++.+...+.. ++..+...-. +++..||.+|-.++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 455677888888999999999999999999988766655544433 3333333222 34678999998888
Q ss_pred HHhHh
Q 001749 403 GQFAE 407 (1018)
Q Consensus 403 ~~l~~ 407 (1018)
..+..
T Consensus 115 ~~if~ 119 (122)
T cd03572 115 KAIFS 119 (122)
T ss_pred HHHhc
Confidence 77653
No 333
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=72.82 E-value=67 Score=30.46 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=72.3
Q ss_pred ChhHHHHHHHHHHHHhhcChHHHH---Hh-------HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhh
Q 001749 350 SPKYREAAVTAIGIISEGCAEWMK---EK-------LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (1018)
Q Consensus 350 ~~~~r~aal~~l~~l~~~~~~~~~---~~-------l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (1018)
+...|.-++..+..+.+..++.+. .+ -..+.+.+++.+..+++.+-..++..+..+...+...++..++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887665555 11 13566777777776778888899999999998887777777788
Q ss_pred HHHHHHH-hccCCC--hHHHHHHHHHHHHHHhh
Q 001749 420 VLPCILN-ALEDES--DEVKEKSYYALAAFCED 449 (1018)
Q Consensus 420 ~l~~l~~-~l~~~~--~~v~~~a~~al~~l~~~ 449 (1018)
+++.++. .+..+. ..-|..+..++..+++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 8888777 444333 34667788888888763
No 334
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=72.48 E-value=14 Score=36.21 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=53.8
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh
Q 001749 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (1018)
Q Consensus 340 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 417 (1018)
+.+..+..|++.-.|.+++.++...... ....+.+++.+-..+.|++..||.+..|+|..++...+..+.+++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5667788888877777776555443322 235678888888999999999999999999999988655444443
No 335
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=71.95 E-value=15 Score=43.65 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=73.7
Q ss_pred HHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHH-hhHHHHHHhcC-CCChHHHHHHHHHHHHHHhhcCcch
Q 001749 793 KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVD-RVMPLVLKELA-SPDAMNRRNAAFCVGELCKNGGESA 870 (1018)
Q Consensus 793 ~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~ 870 (1018)
.++..+-.++... ..|..++..|+.+++.-++.+....+ .+++.++++|. |.+..+-..|+.+|.-+.-+.+..+
T Consensus 70 ~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 70 HLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 3444444555543 35999999999999987777665544 78899999988 8889999999999999999998888
Q ss_pred hhHHHHHHHhhhhccCC
Q 001749 871 LKYYGDILRGLYPLFGD 887 (1018)
Q Consensus 871 ~~~~~~il~~L~~~l~~ 887 (1018)
.+|++.++....+++..
T Consensus 147 ~~~L~~Lf~If~Rl~~W 163 (668)
T PF04388_consen 147 GPHLPDLFNIFGRLLSW 163 (668)
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 99999999888887755
No 336
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=71.49 E-value=1.9e+02 Score=32.97 Aligned_cols=115 Identities=12% Similarity=0.214 Sum_probs=82.1
Q ss_pred HHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 372 MKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 372 ~~~~l~~l~~-~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
+...+..+.. .++....|-++.+|..+...++..+...+..+... ..+...-=.|.|.+..||....+.+..++..-
T Consensus 268 ~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~--~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~ 345 (740)
T COG5537 268 IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKI--LGLRYNGWSLSDNHEGVRLLVSKILLFLCSRI 345 (740)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhh--hcccccccccccchHHHHHHHHHHHHHHHhcC
Confidence 3445555555 56677889999999999988888877665433221 13333444567888889999999999999876
Q ss_pred c--cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 001749 451 G--EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1018)
Q Consensus 451 ~--~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~ 488 (1018)
+ +.+..+++.....++..+......||..++..+..+-
T Consensus 346 p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 346 PHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 3 3466788888888888877665458988887776553
No 337
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=70.96 E-value=1.3e+02 Score=35.93 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=82.7
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCH--HHHHhhhh
Q 001749 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--EIVSHYES 419 (1018)
Q Consensus 342 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~ 419 (1018)
+..-+.+.....-.-|+.+...+...|.+.+..+...++.++...|.+.++.++..++.++-.|+...+. .....++.
T Consensus 61 ~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~ 140 (819)
T KOG1877|consen 61 CYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDF 140 (819)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHH
Confidence 3333455555666778889999999999999778889999999999999999999999999999854422 22222344
Q ss_pred HHHHHHHhccC---CC--hHHHHHHHHHHHHHHhhh-ccc-----ccc-chHHHHHHHHHhhcC
Q 001749 420 VLPCILNALED---ES--DEVKEKSYYALAAFCEDM-GEE-----ILP-FLDPLMGKLLAALEN 471 (1018)
Q Consensus 420 ~l~~l~~~l~~---~~--~~v~~~a~~al~~l~~~~-~~~-----~~~-~~~~l~~~l~~~l~~ 471 (1018)
+++.+.+...+ .+ ..+|.....+|..+.... .++ ..+ +.+.+++.+...++.
T Consensus 141 Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~ 204 (819)
T KOG1877|consen 141 FISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQS 204 (819)
T ss_pred HHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcc
Confidence 55554443332 21 235555566666555433 111 122 355666666655443
No 338
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=70.38 E-value=1.3e+02 Score=30.57 Aligned_cols=126 Identities=15% Similarity=0.165 Sum_probs=73.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhc----ccC-ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-----
Q 001749 168 LQDETSNRVRIAALKAIGSFLE----FTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP----- 237 (1018)
Q Consensus 168 l~d~~~~~vr~~a~~~l~~~~~----~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~----- 237 (1018)
++| +++.|.+.++.|.+.++. +.. ++.....|. .+..+-+.+...+.++++.++..|++.+..++-..
T Consensus 2 l~d-~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~-~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~ 79 (239)
T PF11935_consen 2 LND-EDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWE-SMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSS 79 (239)
T ss_dssp CT--SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHH-HHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---T
T ss_pred CCC-CcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCC
Confidence 556 788899989888877654 332 111112222 22333334444567788889999988887765210
Q ss_pred -------------------------ccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHH
Q 001749 238 -------------------------APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIP 292 (1018)
Q Consensus 238 -------------------------~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~ 292 (1018)
+..+..--..++..++..+.....+...-..++..|..+++.+|. +...
T Consensus 80 ~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~------~~~~ 153 (239)
T PF11935_consen 80 DSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ------FMSR 153 (239)
T ss_dssp TS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG------GHHH
T ss_pred CCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH------HHHH
Confidence 001222233467777777776655667777778888888887765 5556
Q ss_pred HHHHHhhhh
Q 001749 293 ILQVMCPLL 301 (1018)
Q Consensus 293 i~~~l~~~l 301 (1018)
+++.+..+=
T Consensus 154 Il~~ll~~~ 162 (239)
T PF11935_consen 154 ILPALLSFN 162 (239)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 666665543
No 339
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=70.02 E-value=63 Score=30.64 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHhHhhcCHHHH------H----hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHH
Q 001749 392 QFVRGAASFALGQFAEYLQPEIV------S----HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL 461 (1018)
Q Consensus 392 ~~Vr~~a~~~l~~l~~~~~~~~~------~----~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l 461 (1018)
...|.-++..+..+.+..++.+. . .-..+.+.+++.+..+++.+-..++..+..+...++..+..-++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777776666555444 1 1256778888888777778888899999999988877777666777
Q ss_pred HHHHHH-hhcCCC--HhHHHHHHHHHHHHHH
Q 001749 462 MGKLLA-ALENSP--RNLQETCMSAIGSVAA 489 (1018)
Q Consensus 462 ~~~l~~-~l~~~~--~~vr~~al~al~~l~~ 489 (1018)
++.+.. .+.+.. ..-|..+++++..+..
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 777766 555443 4577778888877764
No 340
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=68.82 E-value=80 Score=27.58 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHh----cc--CCChHHHHHHHHHHHHH
Q 001749 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNA----LE--DESDEVKEKSYYALAAF 446 (1018)
Q Consensus 376 l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~----l~--~~~~~v~~~a~~al~~l 446 (1018)
...++..|.+.+.++++++..-|+..+..++..+++.+..++ ..++..+++. .. +.+..||..+...+...
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456888899999999999999999999999999998776543 2333334331 11 23457888877776643
No 341
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=68.52 E-value=97 Score=34.55 Aligned_cols=132 Identities=11% Similarity=0.096 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcc---hhch-HHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhH-HHHHHHHHhhcCCCC
Q 001749 317 RAAAEVIDTMALNLA---KHVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPE 391 (1018)
Q Consensus 317 ~~a~~~l~~l~~~~~---~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~l~~~l~~~l~d~~ 391 (1018)
.++..+|..++.... .... .++.+.+.+.+.+++......+..++....-.....-..++ ..++..+.+.+...+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 445566666665433 1111 24555566667776655554444433332222111111112 245666666666667
Q ss_pred hhHHHHHHHHHHHhHhhcCHHHH-Hhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHh
Q 001749 392 QFVRGAASFALGQFAEYLQPEIV-SHY-ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1018)
Q Consensus 392 ~~Vr~~a~~~l~~l~~~~~~~~~-~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (1018)
...|....|.+..+.-.++...+ +.+ +.=+..++...+|+...|+..+...+.+|.=
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 78899999999998877765432 233 3447888899999999999999999999864
No 342
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=68.00 E-value=9.5 Score=41.85 Aligned_cols=134 Identities=12% Similarity=0.189 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhhcChHHHHHhH--HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhccCC
Q 001749 355 EAAVTAIGIISEGCAEWMKEKL--ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDE 431 (1018)
Q Consensus 355 ~aal~~l~~l~~~~~~~~~~~l--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~ 431 (1018)
.|++.++-.++.... .++..+ ..+.+.++..|.+|...|...+...+..+.-.+.+--..++ ..++..+.+.+...
T Consensus 407 ~a~~l~LkS~SrSV~-~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVT-FLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHH-HHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 355555655554321 111111 25778889999999888887777777666655544333343 57788888888877
Q ss_pred ChHHHHHHHHHHHHHHhhhcc--ccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 001749 432 SDEVKEKSYYALAAFCEDMGE--EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (1018)
Q Consensus 432 ~~~v~~~a~~al~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~ 489 (1018)
+...|....|.+..+.-++.+ .+.+....=+..++...+++...|+.+.++.+..+.-
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 778999999999999888844 3555555668889999999999999999998887753
No 343
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=67.78 E-value=73 Score=34.55 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=67.7
Q ss_pred HHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhh-HHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhh-H
Q 001749 796 DPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAY-VDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALK-Y 873 (1018)
Q Consensus 796 ~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~-~ 873 (1018)
..|+...+..++.......+++++.++++..+.+... ....+..++-.++-.+|.+.+.|+.+||.++.+++..... .
T Consensus 224 ~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrm 303 (832)
T KOG3678|consen 224 GVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRM 303 (832)
T ss_pred hhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHH
Confidence 3444444555555666778888998888865544332 2344555555666678999999999999999999875422 2
Q ss_pred HH-HHHHhhhhccCCCCCCchhHhHHHHHHHHHHH
Q 001749 874 YG-DILRGLYPLFGDSEPDDAVRDNAAGAVARMIM 907 (1018)
Q Consensus 874 ~~-~il~~L~~~l~~~~~~~~~~~na~~al~~l~~ 907 (1018)
+. .+-..|..+... + |+.++-.||-|++.+..
T Consensus 304 veKr~~EWLF~LA~s-k-Del~R~~AClAV~vlat 336 (832)
T KOG3678|consen 304 VEKRAAEWLFPLAFS-K-DELLRLHACLAVAVLAT 336 (832)
T ss_pred HHhhhhhhhhhhhcc-h-HHHHHHHHHHHHhhhhh
Confidence 22 233444444332 2 45556666666665543
No 344
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=67.72 E-value=1.3e+02 Score=30.91 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHHhhcCh-------H-HHHHhHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhHhhcC----HHHHHhh
Q 001749 351 PKYREAAVTAIGIISEGCA-------E-WMKEKLESVLHIVLGAL-RDPEQFVRGAASFALGQFAEYLQ----PEIVSHY 417 (1018)
Q Consensus 351 ~~~r~aal~~l~~l~~~~~-------~-~~~~~l~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~----~~~~~~~ 417 (1018)
|+.-+.+...++.+++.++ . .-...+..+-..++..| .-.|..+-..+..++..+|..+- +.+...-
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 6666666666666664321 0 01123444444444433 34566667777778888877664 4444444
Q ss_pred hhHHHHHHHhccCC-Ch---HHHHH--HHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCH--------hHHHHHHHH
Q 001749 418 ESVLPCILNALEDE-SD---EVKEK--SYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR--------NLQETCMSA 483 (1018)
Q Consensus 418 ~~~l~~l~~~l~~~-~~---~v~~~--a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--------~vr~~al~a 483 (1018)
...+..++..+.+. .. -.|.. --.++..++..-+..-.+.++..|..|++..+.+.. .-|.+|+.+
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 55666666666655 22 23433 234556666655443337788899999998776532 467788888
Q ss_pred HHHHHHHh--hccchhhHHHHHH
Q 001749 484 IGSVAAAA--EQAFIPYAERVLE 504 (1018)
Q Consensus 484 l~~l~~~~--~~~~~~~~~~i~~ 504 (1018)
+..+.... ++...+|+.+.+.
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l~ 243 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDALI 243 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHHH
Confidence 87776543 3556666655443
No 345
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=65.58 E-value=42 Score=31.18 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHHhccCchhhhhHHHH-HHHHHHHHHhhhhhhcCCChHHHHHHHH
Q 001749 475 NLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARA-TELLGLVAESVGRARMEPILPPFVEAAI 552 (1018)
Q Consensus 475 ~vr~~al~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a-~~~l~~l~~~~g~~~~~~~~~~l~~~l~ 552 (1018)
.+-..+++++-.++.... ..|.|.+-+++..-..-+...+......|..+ ...+..++..+ +..|.||...+++...
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~L-Kslf~~Y~~~ll~~~~ 114 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKL-KSLFTPYFSYLLDNAV 114 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345566666666665554 47889888888766543433222222233322 35555666555 3368888888888766
Q ss_pred hccCCC------C----hhHHHHHHHHHHHHH
Q 001749 553 SGFGLE------F----SELREYTHGFFSNIA 574 (1018)
Q Consensus 553 ~~l~~~------~----~~~~~~~~~~l~~l~ 574 (1018)
+.|+.. + ..++..++.++....
T Consensus 115 ~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F 146 (153)
T PF08146_consen 115 DLLKQFNSSKTESKSKSWELWRLVLSTLQKCF 146 (153)
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Confidence 655421 2 355555555554433
No 346
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.07 E-value=3e+02 Score=35.74 Aligned_cols=230 Identities=11% Similarity=0.140 Sum_probs=125.2
Q ss_pred cCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhh-cCHHHH---HhhhhHHH
Q 001749 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY-LQPEIV---SHYESVLP 422 (1018)
Q Consensus 347 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~-~~~~~~---~~~~~~l~ 422 (1018)
++.+...|+..+.|++. ..+.-...++..+-..-.|.+..+...+...++.+... +...+. ..+...++
T Consensus 1047 ~s~s~~Irelv~rC~~~-------nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1047 RSSSAEIRELVVRCISS-------NIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVK 1119 (1514)
T ss_pred ccCcchhHHHHHhhhhh-------hhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHH
Confidence 45567788877777762 22223445666666666777888777777777744332 221111 12223333
Q ss_pred HHHHhccCCC-hHHHHHHHHHHH----HHHhh-----hc-------cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHH
Q 001749 423 CILNALEDES-DEVKEKSYYALA----AFCED-----MG-------EEILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (1018)
Q Consensus 423 ~l~~~l~~~~-~~v~~~a~~al~----~l~~~-----~~-------~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~ 485 (1018)
.+.+...+.. +.....+...+. .+.+. .. +....+.-+++-.+-.........+|..++..+-
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHH
Confidence 3332222110 111111111111 11111 11 1112233345555555556678899999999999
Q ss_pred HHHHHhhccchhhH-HHHHHHHHHHHhcc---Cc----hhhh--hHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhcc
Q 001749 486 SVAAAAEQAFIPYA-ERVLELLKIFMVLT---ND----EDLR--SRARATELLGLVAESVGRARMEPILPPFVEAAISGF 555 (1018)
Q Consensus 486 ~l~~~~~~~~~~~~-~~i~~~l~~~l~~~---~~----~~~~--~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l 555 (1018)
.+...-|++|.+.+ ..+..++..++... .+ .++- ....|+..+..+-... -+.....++.++..+..+.
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~-~~~l~~lL~~~~~ll~~ci 1278 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQF-FKQLNNLLPKVLGLLVGCI 1278 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 99999999998755 44544554444321 11 1111 1222333332222211 1123355666777777777
Q ss_pred CCCChhHHHHHHHHHHHHHHHcccCcccc
Q 001749 556 GLEFSELREYTHGFFSNIAGVLEDGFAQY 584 (1018)
Q Consensus 556 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 584 (1018)
+.++..+-....+|+..+....|..|..+
T Consensus 1279 ~~~n~~la~~g~~cl~~l~~~n~~~fse~ 1307 (1514)
T KOG0929|consen 1279 KQDNQQLARIGTSCLLQLVSSNGEKFSEE 1307 (1514)
T ss_pred cCcchhhHHhHHHHHHHHHHhcccccCHh
Confidence 78888888889999999999999988764
No 347
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=63.89 E-value=32 Score=30.46 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 374 EKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 374 ~~l~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
.+++.++|.+..++. ...+..|.++...++.++...+= -.+.+..++..+.+....... ...+..++..+++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-SDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 357789999999999 78899999999999999987631 124456666666665554433 456677777777554
No 348
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=63.05 E-value=5.6 Score=24.09 Aligned_cols=14 Identities=57% Similarity=0.707 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHh
Q 001749 394 VRGAASFALGQFAE 407 (1018)
Q Consensus 394 Vr~~a~~~l~~l~~ 407 (1018)
||..|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999999876
No 349
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=62.97 E-value=2.9e+02 Score=31.99 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=45.6
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 001749 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (1018)
Q Consensus 380 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (1018)
+..+-+.+.-.++.+|.+.--|+|-++-.-+.. .++..|-+...|.+..|..+++.+++-+
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~------~vlDtLsk~shd~D~eva~naIfamGLi 702 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV------NVLDTLSKFSHDGDLEVAMNAIFAMGLI 702 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc------hHHHHHHHhccCcchHHHHHHHHHhccc
Confidence 344555556678899999999998887665321 6788888888888888888888887754
No 350
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=62.05 E-value=4.6e+02 Score=33.91 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=56.0
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh
Q 001749 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 378 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (1018)
..+..++..|+..+..|...+|-+|-+++...+ ..++++ ...++.+.+.+.+.+.-+...+..+|.+++..-
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p-~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP-EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCH-HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 567788888899999999999999999987764 344543 456777778888777778888899999887654
No 351
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.47 E-value=1.9e+02 Score=32.42 Aligned_cols=219 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHH
Q 001749 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (1018)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 415 (1018)
++.+..+..++++++.+.+.+|++.++....| .+-+.++..+.+.+.+.+..+...++..+.-=.-.++..-..
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsG------t~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD 522 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSG------TQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGD 522 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcC------CcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCch
Q ss_pred hhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc
Q 001749 416 HYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (1018)
Q Consensus 416 ~~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~ 494 (1018)
....++..+++.-. ..+..--.-..-.|+.+...-++........++..=-.+-+....-|......-=|.+
T Consensus 523 ~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdv------- 595 (881)
T COG5110 523 LTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDV------- 595 (881)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcH-------
Q ss_pred chhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCChhHHHHHHHHHHHH
Q 001749 495 FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNI 573 (1018)
Q Consensus 495 ~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l 573 (1018)
.+++.+..+-...+..+.......++.++.++.++-.-.-.--.+..+..+-..+..+++.+|..+--|++-+
T Consensus 596 ------l~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gil 668 (881)
T COG5110 596 ------LVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGIL 668 (881)
T ss_pred ------HHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcc
No 352
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=61.34 E-value=48 Score=28.92 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhh-HHHHHHhcCCCChHHHHHHHHHHHHHH
Q 001749 789 PIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRV-MPLVLKELASPDAMNRRNAAFCVGELC 863 (1018)
Q Consensus 789 ~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l-~~~l~~~l~~~~~~vr~~a~~~lg~l~ 863 (1018)
.+...++..+.+.+....+ ..|..+++++.+++++++.....++... .+.+.......++++|......++.+-
T Consensus 33 ~~a~~iv~~i~~~i~~~~~-~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~ 107 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPP-EQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWE 107 (114)
T ss_pred HHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 3455677777777776655 5689999999999999988766655544 555656666677777766555555443
No 353
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=61.18 E-value=60 Score=37.26 Aligned_cols=223 Identities=14% Similarity=0.143 Sum_probs=115.0
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHH-----HHhhcC------CCChhHHHHHHHHH
Q 001749 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHI-----VLGALR------DPEQFVRGAASFAL 402 (1018)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~-----l~~~l~------d~~~~Vr~~a~~~l 402 (1018)
++..++.++.....+.+..+|..+...++.+....+-.....+-++++. .+..++ +.|+.+-..+...+
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 3455666666677788888999999888888876543322222223332 333333 34555544444444
Q ss_pred HHhHhhcCHHHHHhhhh-HHHHHHHhccCCC--------hHHHHHHHHHHHHHHhhhccccccchHH-HHHHHHH-hhcC
Q 001749 403 GQFAEYLQPEIVSHYES-VLPCILNALEDES--------DEVKEKSYYALAAFCEDMGEEILPFLDP-LMGKLLA-ALEN 471 (1018)
Q Consensus 403 ~~l~~~~~~~~~~~~~~-~l~~l~~~l~~~~--------~~v~~~a~~al~~l~~~~~~~~~~~~~~-l~~~l~~-~l~~ 471 (1018)
+ ++...+- ++.+. +.+.+.+++.-.. ..+|.++|..+-.+.+...+.+.|-+.. +.-.+++ .+-+
T Consensus 323 a-la~~~~i---d~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFD 398 (993)
T COG5234 323 A-LAGAGLI---DYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFD 398 (993)
T ss_pred H-Hhhcccc---chhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcC
Confidence 4 4333222 22222 4444445554221 2478888888888887755555554543 3334444 6677
Q ss_pred CCHhHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHH-
Q 001749 472 SPRNLQETCMSAIGSVAAAAEQAFI-PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVE- 549 (1018)
Q Consensus 472 ~~~~vr~~al~al~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~- 549 (1018)
++..+|..|..++-.+... ++. +.-...+..+ +.. .+. +.-+|-|.+.+.+.+..-...+..+.+
T Consensus 399 pel~vRr~a~Aal~E~iGR---~~s~a~g~~lIslI-N~~--------sv~-r~s~csg~~~r~~~~~~k~~~CedVF~d 465 (993)
T COG5234 399 PELNVRRAATAALFEVIGR---HASIADGLSLISLI-NYV--------SVT-RISNCSGDLCRKVAHFPKFRSCEDVFQD 465 (993)
T ss_pred chhhhhhHHHHHHHHHhcc---CCCcccchhhhhhc-cce--------ecc-hhhhcchHHHHHhcCccccchHHHHHHH
Confidence 8889998888776544333 211 1111222221 110 011 234666777776654331122233333
Q ss_pred HHHhccCCCChhHHHHHHHHHHHH
Q 001749 550 AAISGFGLEFSELREYTHGFFSNI 573 (1018)
Q Consensus 550 ~l~~~l~~~~~~~~~~~~~~l~~l 573 (1018)
++++.+..-++.++...--++..+
T Consensus 466 iLl~Nl~H~~~~~k~~~~y~l~~l 489 (993)
T COG5234 466 ILLTNLQHWDVKVKQLSAYSLRQL 489 (993)
T ss_pred HHHhhhhccchhhhhhccccHHHH
Confidence 356655544555555544455555
No 354
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=60.88 E-value=75 Score=29.49 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=50.4
Q ss_pred hhHHHHHHHhccCC--ChHHHHHHHHHHHHHHhhhccccccch-HHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001749 418 ESVLPCILNALEDE--SDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (1018)
Q Consensus 418 ~~~l~~l~~~l~~~--~~~v~~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~ 493 (1018)
+.++..+...++.+ +..+...|...|.+++.+.+....-.. +--++.|...++.++..++..++..+.++...+++
T Consensus 57 ~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 57 DSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 34444444444433 357888999999999887643211111 22467888888889999999999888777655543
No 355
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=60.75 E-value=1.3e+02 Score=30.92 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=43.8
Q ss_pred HhhhhHHHHHHHhccCCCh--------HHHHHHHHHHHHHHhhh--ccccccchHHHHHHHHHhhcCCC
Q 001749 415 SHYESVLPCILNALEDESD--------EVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAALENSP 473 (1018)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~--------~v~~~a~~al~~l~~~~--~~~~~~~~~~l~~~l~~~l~~~~ 473 (1018)
+.++..+..|++....+.. .-|.+|..+|..++... ++.+.+|+.+.+..-+..+.++.
T Consensus 185 ~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~ 253 (255)
T PF10350_consen 185 PLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSPD 253 (255)
T ss_pred hHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4566677777766665432 47889999999998765 67788999988888777777654
No 356
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=60.73 E-value=69 Score=31.68 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh
Q 001749 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (1018)
Q Consensus 338 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 417 (1018)
+.+.+.+...|++.-.|.+|+.+.-...+. ...+.+...+...+.|++..|+.+.-|+|..++..-++.+..++
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 345666778888766666666443222221 12356677788888999999999999999999987554444433
No 357
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=60.58 E-value=67 Score=28.38 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=49.6
Q ss_pred hhHHhhHHHHHHhcC-CCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCCCCCchhHhHHHHHHHHHHHhC
Q 001749 831 AYVDRVMPLVLKELA-SPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVN 909 (1018)
Q Consensus 831 ~~~~~l~~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~ 909 (1018)
.++..++|.+.+++. ...++.|-++.-.++.++.+.+ .-++++..+...+-...........++.|+..+...+
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-----L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-----LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 367889999999999 7788999888888899988765 3344444444333221111122356778888887665
No 358
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=60.55 E-value=1.9e+02 Score=29.00 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCcchhhH-HHHHHHhhhhccCC------CCCCchhHhHHHHHHHHHHHhCCCCC----C-hhhHHHHH
Q 001749 855 AAFCVGELCKNGGESALKY-YGDILRGLYPLFGD------SEPDDAVRDNAAGAVARMIMVNPQSI----P-LNQVLPVL 922 (1018)
Q Consensus 855 a~~~lg~l~~~~~~~~~~~-~~~il~~L~~~l~~------~~~~~~~~~na~~al~~l~~~~~~~~----~-~~~~l~~~ 922 (1018)
++.++-.+....+-.+.++ ++.+++.+..+... .+....+....+..++.+++.++..+ | +-.++..+
T Consensus 8 ~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~L 87 (223)
T PF10441_consen 8 ILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRL 87 (223)
T ss_pred HHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHH
Confidence 4444444444444334443 44555555554432 12335677778888888888876654 2 33333344
Q ss_pred HhhCC------CCC----cHH--hhHHHHHHHHHHHhhc-------------------ChhhhhhhhHHHHHHHHHhcCC
Q 001749 923 LKVLP------LKE----DFE--ESMAVYNCISTLVLSS-------------------NPQILSLVPELVNLFAEVVVSP 971 (1018)
Q Consensus 923 l~~lp------~~~----d~~--e~~~~~~~l~~l~~~~-------------------~~~~~~~~~~il~~~~~~~~~~ 971 (1018)
+..|- ... ..+ ++...-+.|..+.+.. ...+..+++-++.-........
T Consensus 88 L~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~~~~ 167 (223)
T PF10441_consen 88 LRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLANYISLQLKY 167 (223)
T ss_pred HHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 44332 011 111 1333334444444320 0112356676666666665555
Q ss_pred CCChHHHHHHHHHHHHHHHHh-HhhHHHHHhcCCHHHHHHHHhhc
Q 001749 972 EESSEVKSQVGMAFSHLISLY-GQQMQPLLSNLSPAHATALAAFA 1015 (1018)
Q Consensus 972 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~ 1015 (1018)
....+++..+..-+..+...- +...+.+...|+...|..+++++
T Consensus 168 ~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly 212 (223)
T PF10441_consen 168 TLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLY 212 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHH
Confidence 577899999999999988764 34577777889999888887764
No 359
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.51 E-value=3.1e+02 Score=31.18 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=48.5
Q ss_pred HhhHHHHHHhcC-CCChHHHHHHHHHHHHHHhhcCcch---------hhH-----HHHHHHhhhh-ccCCCCCCchhHhH
Q 001749 834 DRVMPLVLKELA-SPDAMNRRNAAFCVGELCKNGGESA---------LKY-----YGDILRGLYP-LFGDSEPDDAVRDN 897 (1018)
Q Consensus 834 ~~l~~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~---------~~~-----~~~il~~L~~-~l~~~~~~~~~~~n 897 (1018)
+.+++.++..|. +.++++..+|+..|..++..+.... .+. .++.+..|.. ++.. ......-|
T Consensus 61 q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~--~~~s~lvn 138 (475)
T PF04499_consen 61 QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNS--QGGSSLVN 138 (475)
T ss_pred hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcC--CCcchHHH
Confidence 578888888887 5578889999999999987654211 111 1234443333 2321 12556678
Q ss_pred HHHHHHHHHHhCCC
Q 001749 898 AAGAVARMIMVNPQ 911 (1018)
Q Consensus 898 a~~al~~l~~~~~~ 911 (1018)
+++.+-.+++.+..
T Consensus 139 ~v~IlieLIRknns 152 (475)
T PF04499_consen 139 GVSILIELIRKNNS 152 (475)
T ss_pred HHHHHHHHHHhccc
Confidence 88888888877643
No 360
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=58.93 E-value=2.7e+02 Score=32.70 Aligned_cols=115 Identities=15% Similarity=0.190 Sum_probs=66.5
Q ss_pred HHhhHHHHHHhcC-CCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCCC------------CCCchhHhHHH
Q 001749 833 VDRVMPLVLKELA-SPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS------------EPDDAVRDNAA 899 (1018)
Q Consensus 833 ~~~l~~~l~~~l~-~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~------------~~~~~~~~na~ 899 (1018)
...++..+++.-= ..+++++..-..-++.|+...+. |++.++..|++.+... +....+.+++.
T Consensus 71 ~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH 146 (563)
T PF05327_consen 71 CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVH 146 (563)
T ss_dssp CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HHHHHH---------------HH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHH
Confidence 4455666655411 56778888777888888877665 6777777776665421 12245667889
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhh-HHHHHHHHHHHhhcChhhh
Q 001749 900 GAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEES-MAVYNCISTLVLSSNPQIL 954 (1018)
Q Consensus 900 ~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~-~~~~~~l~~l~~~~~~~~~ 954 (1018)
.++.+|+...|... ..+.+.+.+.+|........ ..-.+.++.+.. +-|.+.
T Consensus 147 ~~L~~Il~lvP~s~--~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~-Y~P~L~ 199 (563)
T PF05327_consen 147 DALQKILRLVPTSP--SFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTE-YCPELR 199 (563)
T ss_dssp HHHHHHHHH-GGGH--HHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHC-C-GGGH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHc-chHHHH
Confidence 99999999877663 67888889999988765544 344455555553 556553
No 361
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=58.66 E-value=2e+02 Score=31.12 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcC
Q 001749 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN 471 (1018)
Q Consensus 392 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 471 (1018)
..++...+.+|..+..+-..--+..-+.++..+..++.+. ....|..+|.-.|-.++..+.++++.++..|.+...+
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt 287 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTT 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 3466667777777776542111223457778887777653 3456778888888888888889999999888776554
Q ss_pred CCHhHHHHHHHHHHHHHH
Q 001749 472 SPRNLQETCMSAIGSVAA 489 (1018)
Q Consensus 472 ~~~~vr~~al~al~~l~~ 489 (1018)
. .+-...++-++.++.
T Consensus 288 ~--~~Ai~ILEFLs~L~~ 303 (356)
T PF03542_consen 288 P--NMAIHILEFLSSLSR 303 (356)
T ss_pred h--hhHHHHHHHHHHHhh
Confidence 3 344456666655544
No 362
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.54 E-value=85 Score=35.12 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=73.2
Q ss_pred hhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhh--hhHH
Q 001749 344 VSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVL 421 (1018)
Q Consensus 344 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~l 421 (1018)
..+..+||..--.-|..+..--.+ -...+..|.+.+++.++.|+.-|+..|..++..|+..+...+ +.++
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~~~--------~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTEGG--------PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCccC--------cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 346677885443333333221112 236778888999999999999999999999999998776432 6788
Q ss_pred HHHHHhccCC--ChHHHHHHHHHHHHHHhhhcc
Q 001749 422 PCILNALEDE--SDEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 422 ~~l~~~l~~~--~~~v~~~a~~al~~l~~~~~~ 452 (1018)
+.+++..... ...||..++..|..--+.++.
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 8888888765 456999999999988887754
No 363
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=57.07 E-value=2.8e+02 Score=29.86 Aligned_cols=153 Identities=11% Similarity=0.103 Sum_probs=95.8
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHHhhc-ChHH---HHHhHHHHHHHHHhhcC----CCC---------hhHHHHHHHH
Q 001749 339 FEFASVSCQNASPKYREAAVTAIGIISEG-CAEW---MKEKLESVLHIVLGALR----DPE---------QFVRGAASFA 401 (1018)
Q Consensus 339 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~-~~~~---~~~~l~~l~~~l~~~l~----d~~---------~~Vr~~a~~~ 401 (1018)
+..+...+++.......+++..+..++.. .+.. +-..++--.+.+.+.+. +.. +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 56667778888877788999999998883 2222 11111111222222221 111 3899999999
Q ss_pred HHHhHhhcCHHHHH-hh--hhHHHHHHHhccCCChHHHHHHHHHHHHHH-hhh--cc--ccccchHHHHHHHHHhhcCCC
Q 001749 402 LGQFAEYLQPEIVS-HY--ESVLPCILNALEDESDEVKEKSYYALAAFC-EDM--GE--EILPFLDPLMGKLLAALENSP 473 (1018)
Q Consensus 402 l~~l~~~~~~~~~~-~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~-~~~--~~--~~~~~~~~l~~~l~~~l~~~~ 473 (1018)
+-.+.....+.+.. .+ ..++..+++.+....+.+......++..-+ ..- +. ...-+-+..+..+..+.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 99998887776653 22 456999999999876666666666665432 211 11 122344568888888777665
Q ss_pred H----hHHHHHHHHHHHHHHHh
Q 001749 474 R----NLQETCMSAIGSVAAAA 491 (1018)
Q Consensus 474 ~----~vr~~al~al~~l~~~~ 491 (1018)
. .+++.+-+-+-.++...
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 5 77777777777766443
No 364
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=56.92 E-value=2e+02 Score=28.14 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHH
Q 001749 358 VTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE 412 (1018)
Q Consensus 358 l~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 412 (1018)
+..++.+.+.+.....+.+..++..+...-.+++...|..+=.++|.....+||+
T Consensus 21 l~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 21 LNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 3444444444444444566667777777667777788888888888888888875
No 365
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=56.50 E-value=40 Score=32.87 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhc
Q 001749 465 LLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM 540 (1018)
Q Consensus 465 l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~ 540 (1018)
+-..++-.-...-..++..++.+....+....|++..++..+.+.-.. ++...|..+-+++|...+++|++.+
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~---~~f~~~~~~e~~lgaAi~amGpe~v 77 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRES---EDFSFRKELEQVLGAAIRAMGPEQV 77 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHHHCCHHHH
Confidence 344454444566778899999999999988777777666666554433 3345677888899999999998543
No 366
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=55.79 E-value=2.3e+02 Score=28.44 Aligned_cols=139 Identities=15% Similarity=0.133 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHh----hcCCHHHHHHHHHHHHHHHcccCCC----CCccchHH
Q 001749 50 PNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESIT----LEHSAPVRRASANVVSIIAKYAVPA----GEWPDLLP 121 (1018)
Q Consensus 50 ~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~----~e~~~~vr~~~~~~l~~i~~~~~~~----~~w~~ll~ 121 (1018)
...|-.-+..|-..+..+-+.=..-.+.+|=--+...|. +-+...+|-.+-.+|+.+++.+... -.|.+++|
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 345766677777776655322111111122222333333 2245678888888888888754221 24789999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhhhh-h-----cccc--ccHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHhhc
Q 001749 122 FLFQFSQSEQEEHREVALILFSSLTETI-G-----QTFR--PHFADMQ-ALLLKCLQDETSNRVRIAALKAIGSFLE 189 (1018)
Q Consensus 122 ~l~~~~~s~~~~~r~~al~~l~~l~~~~-~-----~~~~--~~~~~l~-~~l~~~l~d~~~~~vr~~a~~~l~~~~~ 189 (1018)
.....+.+++...+..|..+++.|.-+. | ..+. ..+..++ .++.+..+. +++.+-+.+++|..++..
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~-ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM-PSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcC
Confidence 9999999998888899999999887432 1 0111 1122333 334444444 666666666666555543
No 367
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=55.33 E-value=2.1e+02 Score=27.88 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCC-CCccchHHHHHHhhcCCC-----hHHHHHHHHHHHHhhh
Q 001749 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-GEWPDLLPFLFQFSQSEQ-----EEHREVALILFSSLTE 147 (1018)
Q Consensus 74 ~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-~~w~~ll~~l~~~~~s~~-----~~~r~~al~~l~~l~~ 147 (1018)
+....+...+++... |.-..||..++.++..+.....+. ...| -.+.+...+..+. |..-...+..+..+..
T Consensus 3 ~~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 344555556666555 677889999999999988544331 1222 2355555444322 3222233333333321
Q ss_pred hhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 001749 148 TIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAF 227 (1018)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~ 227 (1018)
+..+...++..+...... .+..+...|..+|..++..... .......+...++..+.... +++.+..-.+
T Consensus 81 -----~~~y~~~ll~Glv~S~G~-~tesl~~~s~~AL~~~~~~~~~--~~~~~~~v~~~l~~il~~~~--~~dRv~vP~l 150 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGG-LTESLVRASSAALLSYLRELSD--SPEELEQVLSDLLSILKENL--RNDRVVVPLL 150 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCC-CchhHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHhC--CCCCeeecHH
Confidence 123455566666555555 5666777777888777753211 12334445555555544322 3445555666
Q ss_pred HHHHHHhcC
Q 001749 228 EIFDELIES 236 (1018)
Q Consensus 228 ~~l~~l~~~ 236 (1018)
+.+..+.+.
T Consensus 151 ~tl~~Ll~~ 159 (193)
T PF12612_consen 151 KTLDFLLSS 159 (193)
T ss_pred HHHHHHHhC
Confidence 666666653
No 368
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=54.07 E-value=2.7e+02 Score=28.72 Aligned_cols=196 Identities=16% Similarity=0.133 Sum_probs=112.5
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHH-HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcccc--
Q 001749 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV-SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI-- 454 (1018)
Q Consensus 378 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~-- 454 (1018)
.++..++..+.-.++.++.. +.+..++... ..++.+-+.+++++..+. ..+.+...+..+.....+.+
T Consensus 29 ~lL~~~l~k~dl~~~~~~~~-------L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig 99 (262)
T PF14225_consen 29 SLLNKLLDKLDLDDPDVRDV-------LESSQPQLWEWGNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIG 99 (262)
T ss_pred HHHHHHHhhcCCchHHHHHH-------HHHhCCccccCCCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccC
Confidence 34444555554445544432 3333333332 467788999999998764 33556777777765432221
Q ss_pred ------ccchHHHHHHHHHhhcCCC----HhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhhhHHHH
Q 001749 455 ------LPFLDPLMGKLLAALENSP----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARA 524 (1018)
Q Consensus 455 ------~~~~~~l~~~l~~~l~~~~----~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a 524 (1018)
.-.+-..+|.++..+.++. ...-..+...|+.++...+ .+-+..++....+ . ..+ ..
T Consensus 100 ~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~---~~~La~il~~ya~---~----~fr---~~ 166 (262)
T PF14225_consen 100 DSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG---LPNLARILSSYAK---G----RFR---DK 166 (262)
T ss_pred CCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC---CccHHHHHHHHHh---c----CCC---CH
Confidence 1123356777777777766 1223344456666653322 2333344433221 1 111 11
Q ss_pred HHHHHHHHHhhhhhhc-CCChHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHHhhcc
Q 001749 525 TELLGLVAESVGRARM-EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (1018)
Q Consensus 525 ~~~l~~l~~~~g~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~ 597 (1018)
-+.+..++..+. +.| ..+-.+++..++..+.+..+-+|..++..+..+.....-. .|+-++++.++++.++
T Consensus 167 ~dfl~~v~~~l~-~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~ 238 (262)
T PF14225_consen 167 DDFLSQVVSYLR-EAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQ 238 (262)
T ss_pred HHHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhC
Confidence 234444454443 344 4566778888888887777889999999988888765544 5577788888888775
No 369
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=52.87 E-value=3.3e+02 Score=29.40 Aligned_cols=119 Identities=10% Similarity=0.090 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-ccchhHhHHHHHHH-
Q 001749 174 NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP-APLLGDSVKSIVHF- 251 (1018)
Q Consensus 174 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~li~~- 251 (1018)
.+-+..|.+.+.++..+.++ +-...++.-..+..+++..++..|++-|-.+.... .+...+.+.++++.
T Consensus 38 ~k~k~lasq~ip~~fk~fp~---------la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~ 108 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPS---------LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKA 108 (460)
T ss_pred hHHHHHHHHHHHHHHhhCch---------hhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHH
Confidence 44555666777776666542 22223333333455667777888877766665431 11112222222221
Q ss_pred ----HHHHhcCCCCChHHHHHHHHHHHHHH-HHhHHHhhhcCChHHHHHHHhhhhccC
Q 001749 252 ----SLEVSSSHNLEPNTRHQAIQIISWLA-KYKYNSLKKHKLVIPILQVMCPLLAES 304 (1018)
Q Consensus 252 ----l~~~~~~~~~~~~~r~~a~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~~l~~~ 304 (1018)
++.-... .++.+|..++.|+.+=+ ...+....+ +.-..++..+...|.+.
T Consensus 109 sl~~Lf~~~~~--~D~~irek~l~fi~tKl~~l~~e~L~k-evE~~iv~eikkal~dV 163 (460)
T KOG2213|consen 109 SLTGLFGQIEV--GDEQIREKVLKFIRTKLITLKGEVLTK-EVERHIVDEIKKALEDV 163 (460)
T ss_pred HHHHHHhhhhh--hhHHHHHHHHHHHHHHhhcccHHHhhh-HHHHHHHHHHHHHHHhc
Confidence 1111122 37789999988876433 222222221 12233455555555544
No 370
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=52.26 E-value=5.2e+02 Score=31.57 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHH
Q 001749 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEV 435 (1018)
Q Consensus 389 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v 435 (1018)
|.+..||..+..+|..++++|....--.+-.+++++.+.-.++.+..
T Consensus 484 ~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~s~~~~l 530 (1697)
T KOG3687|consen 484 DKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSLSPPPEL 530 (1697)
T ss_pred cchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcccCCCcch
Confidence 66789999999999999999865433334566666666544444433
No 371
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=51.49 E-value=21 Score=22.06 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHh
Q 001749 351 PKYREAAVTAIGIIS 365 (1018)
Q Consensus 351 ~~~r~aal~~l~~l~ 365 (1018)
|.+|+.+..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999874
No 372
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=51.09 E-value=2.8e+02 Score=28.13 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=76.3
Q ss_pred cCCCChhHHHHHHHHHHHhHhhc------CHHH---HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhh--cc---
Q 001749 387 LRDPEQFVRGAASFALGQFAEYL------QPEI---VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM--GE--- 452 (1018)
Q Consensus 387 l~d~~~~Vr~~a~~~l~~l~~~~------~~~~---~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~--~~--- 452 (1018)
++|+++.|...+..|.+.+-... .+.. ...+..+=..++..+.+.++.||..|.+.+..++... +.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 57788888888877777654332 1111 2234555667778888888899999999999887433 10
Q ss_pred ----------cc--c----c---------chHHHHHHHHHhhcCCC--HhHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Q 001749 453 ----------EI--L----P---------FLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (1018)
Q Consensus 453 ----------~~--~----~---------~~~~l~~~l~~~l~~~~--~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~ 505 (1018)
.+ . | -...+++.|+..+.+.. ..+-..++.+++.+++.=+ .|++.+++.
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP----~~~~~Il~~ 157 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP----QFMSRILPA 157 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG----GGHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh----HHHHHHHHH
Confidence 00 0 1 13367888888888765 5556666666666665533 356778887
Q ss_pred HHHHHh
Q 001749 506 LKIFMV 511 (1018)
Q Consensus 506 l~~~l~ 511 (1018)
+..+-.
T Consensus 158 ll~~~~ 163 (239)
T PF11935_consen 158 LLSFNP 163 (239)
T ss_dssp HHHHHH
T ss_pred HHhcCc
Confidence 776654
No 373
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=50.84 E-value=3.6e+02 Score=29.31 Aligned_cols=204 Identities=14% Similarity=0.125 Sum_probs=98.5
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHH--hhhhHHHHHHHhcc-------C--CChHHHHHHHHH
Q 001749 374 EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALE-------D--ESDEVKEKSYYA 442 (1018)
Q Consensus 374 ~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~~l~-------~--~~~~v~~~a~~a 442 (1018)
.++.++...+-+.+...+........+++|.+..++++-+.. .-..+++.++.++- + ..+.+-...-..
T Consensus 65 ~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k~ 144 (373)
T PF14911_consen 65 EYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRKS 144 (373)
T ss_pred HHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHHH
Confidence 345555555555555567788888899999999988765432 12334444443332 1 122333334444
Q ss_pred HHHHHhhhc---cccccchHHHHHHHHHh----hcC-------------------CCHhHHHHHHHHHHHHHHHh-hccc
Q 001749 443 LAAFCEDMG---EEILPFLDPLMGKLLAA----LEN-------------------SPRNLQETCMSAIGSVAAAA-EQAF 495 (1018)
Q Consensus 443 l~~l~~~~~---~~~~~~~~~l~~~l~~~----l~~-------------------~~~~vr~~al~al~~l~~~~-~~~~ 495 (1018)
+.-+.+.++ -.-.+|+...+..++.- +-. .+...+..++..+..=--.. +..-
T Consensus 145 lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p 224 (373)
T PF14911_consen 145 LPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKGSAP 224 (373)
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCCCCC
Confidence 444444442 22345555544444332 111 02223444444433221111 2334
Q ss_pred hhhHHHHHHHHHHHHhcc----Cchhhh-hHHHHHHHHHHHHHhhh-hhhcCCChHHHHHHHHhccC-CCChhHHHHHHH
Q 001749 496 IPYAERVLELLKIFMVLT----NDEDLR-SRARATELLGLVAESVG-RARMEPILPPFVEAAISGFG-LEFSELREYTHG 568 (1018)
Q Consensus 496 ~~~~~~i~~~l~~~l~~~----~~~~~~-~r~~a~~~l~~l~~~~g-~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~~~ 568 (1018)
.|++..++-++.+++... ...... ++.-.-..+.. ...++ ....+..+-++++.+++..+ ..+...++...+
T Consensus 225 ~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c-~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s 303 (373)
T PF14911_consen 225 PPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLEC-LMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTS 303 (373)
T ss_pred CCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHH-HhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHH
Confidence 567777888888877651 111111 11111111111 11222 22234455667777776655 345566776666
Q ss_pred HHHHHHHHcc
Q 001749 569 FFSNIAGVLE 578 (1018)
Q Consensus 569 ~l~~l~~~~~ 578 (1018)
++..+++...
T Consensus 304 ~lrsfvqk~l 313 (373)
T PF14911_consen 304 VLRSFVQKYL 313 (373)
T ss_pred HHHHHHHHHh
Confidence 7766665443
No 374
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=50.14 E-value=4.7e+02 Score=30.42 Aligned_cols=196 Identities=15% Similarity=0.232 Sum_probs=96.6
Q ss_pred HHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccc-cccchHHHHHHHHHhh--cCC-
Q 001749 397 AASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAAL--ENS- 472 (1018)
Q Consensus 397 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l--~~~- 472 (1018)
..+..+.+++..+. .+...+..++..++..=...+..+|..|.-++..+|...... +.+.+-...-..+..- .+.
T Consensus 261 ~~L~~l~~l~~~~~-~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~ 339 (661)
T KOG2256|consen 261 FTLRHLTVLVPFLA-TFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVN 339 (661)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 33444444443331 123344455555544434445567888888888888776433 2232222222222111 010
Q ss_pred C----HhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhh-h-HHHHHHHHHHHHH----hhh-hhhcC
Q 001749 473 P----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLR-S-RARATELLGLVAE----SVG-RARME 541 (1018)
Q Consensus 473 ~----~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-~-r~~a~~~l~~l~~----~~g-~~~~~ 541 (1018)
. ...+..+.+.+|.=...+-..---|+.++--.|++.+...+.++.. + --+-+.|+-..++ +.| ...+.
T Consensus 340 tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq 419 (661)
T KOG2256|consen 340 TLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQ 419 (661)
T ss_pred ccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhh
Confidence 0 1223333333321111111111235556666666666554333222 1 1122233333332 232 33477
Q ss_pred CChHHHHHHHHhccCC-C---ChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHHh
Q 001749 542 PILPPFVEAAISGFGL-E---FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFS 594 (1018)
Q Consensus 542 ~~~~~l~~~l~~~l~~-~---~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~ 594 (1018)
|.+.++++..+..++. + ..++|-.++..+..++...|. |.|.+|.++..+-.
T Consensus 420 ~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 420 PLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEMLKS 475 (661)
T ss_pred hhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHHHH
Confidence 8888888888776662 2 456898999999999988775 66666655555433
No 375
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.91 E-value=5.5e+02 Score=30.53 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=49.6
Q ss_pred HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh
Q 001749 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK 280 (1018)
Q Consensus 201 ~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~ 280 (1018)
..++-.++++|..+..+.-+.++..++..+..++...|.--...+..+++.+ . +....+-..|--.|..+...+
T Consensus 299 K~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKl----G--DpqnKiaskAsylL~~L~~~H 372 (988)
T KOG2038|consen 299 KILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKL----G--DPQNKIASKASYLLEGLLAKH 372 (988)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhc----C--CcchhhhhhHHHHHHHHHhhC
Confidence 4455666676666666666788889999999888887776666666666543 2 233344455555666666555
Q ss_pred HHH
Q 001749 281 YNS 283 (1018)
Q Consensus 281 ~~~ 283 (1018)
|.+
T Consensus 373 PnM 375 (988)
T KOG2038|consen 373 PNM 375 (988)
T ss_pred Ccc
Confidence 543
No 376
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=47.01 E-value=5.1e+02 Score=29.91 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHH--------hhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 001749 374 EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS--------HYESVLPCILNALEDESDEVKEKSYYALAA 445 (1018)
Q Consensus 374 ~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--------~~~~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (1018)
.++..++.-++..+...|..|+..||...-.++..|+.++.. ++..++..+-+.-.|-.+.-...-..|.+-
T Consensus 566 ~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~ 645 (1053)
T COG5101 566 SFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGM 645 (1053)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhH
Confidence 457788888889999999999999999999999999766532 233344444343344445444455666666
Q ss_pred HHhhhc
Q 001749 446 FCEDMG 451 (1018)
Q Consensus 446 l~~~~~ 451 (1018)
++...+
T Consensus 646 vIse~p 651 (1053)
T COG5101 646 VISEVP 651 (1053)
T ss_pred HHhccc
Confidence 665543
No 377
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=45.49 E-value=5e+02 Score=29.38 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Q 001749 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-GEEDVAVIAFEIFDEL 233 (1018)
Q Consensus 172 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~a~~~l~~l 233 (1018)
.+..+...|++||++++-..+.......-..+.+.+++.+...... .+.++.--..++|--+
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLl 106 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLL 106 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHH
Confidence 6889999999999998865532111111123455555554332211 1344444444544433
No 378
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=45.39 E-value=70 Score=25.22 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhHhhcCHHHHHhhh--hHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhh
Q 001749 395 RGAASFALGQFAEYLQPEIVSHYE--SVLPCILNALE-DESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~ 450 (1018)
..+|+|++|.++..- .-.++++ .+++.+++... .+...+|..|..+|+-+....
T Consensus 4 lKaaLWaighIgss~--~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP--LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcCh--HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 468999999998752 2223333 68888887666 455779999999999887654
No 379
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=44.52 E-value=2e+02 Score=24.99 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccccchHH-HHHHHHHh
Q 001749 390 PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDP-LMGKLLAA 468 (1018)
Q Consensus 390 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~-l~~~l~~~ 468 (1018)
..+.+...+.||+... .+.+.++..+.+.+....+.-+-.+...+..++++++.....++.. +.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~---------~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENR---------KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 4455555444444433 3455677777777776667777889999999999986654433333 35555555
Q ss_pred hcCCCHhHHHHHHHH
Q 001749 469 LENSPRNLQETCMSA 483 (1018)
Q Consensus 469 l~~~~~~vr~~al~a 483 (1018)
....+..+|......
T Consensus 88 ~~~~~~~~r~kl~rl 102 (114)
T cd03562 88 YEKVDEKTRKKLERL 102 (114)
T ss_pred HHhCCHHHHHHHHHH
Confidence 555566666544433
No 380
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.01 E-value=1.8e+02 Score=32.65 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=62.7
Q ss_pred HHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhh
Q 001749 460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (1018)
Q Consensus 460 ~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~ 537 (1018)
+.+..|.+-+++..+.++..|+..|..++..||..|-..+ ..+++-+....... ..+..+|.+++..|-....+++.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~-~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNK-PRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccC-CcchhHHHHHHHHHHHHHHHccC
Confidence 7788888888888889999999999999999999876433 34555544444332 14556899999999999888764
Q ss_pred -hhcCCChHHHH
Q 001749 538 -ARMEPILPPFV 548 (1018)
Q Consensus 538 -~~~~~~~~~l~ 548 (1018)
..-.|.+..+.
T Consensus 117 ~~~~~~~~~~~y 128 (470)
T KOG1087|consen 117 PDGYLPDYYQIY 128 (470)
T ss_pred CCCcchhHHHHH
Confidence 33334333333
No 381
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=44.00 E-value=1.4e+02 Score=27.05 Aligned_cols=80 Identities=26% Similarity=0.429 Sum_probs=52.7
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc-cc--cccc
Q 001749 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EE--ILPF 457 (1018)
Q Consensus 381 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~--~~~~ 457 (1018)
..+++.|+-....++.+|.+++.. .. .-+.+.+.+++.+.+++-..|......+..+++.+- .. -.+|
T Consensus 11 ~~~L~~L~aS~qSi~kaa~fAlk~--~~-------~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 11 TQLLRRLNASQQSIQKAAQFALKN--RD-------MEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHc--cc-------cHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 344555555566677777777765 22 234677777778888777788999999999998872 22 4567
Q ss_pred hHHHHHHHHHhh
Q 001749 458 LDPLMGKLLAAL 469 (1018)
Q Consensus 458 ~~~l~~~l~~~l 469 (1018)
...+-..|..++
T Consensus 82 v~~l~~dL~~Iv 93 (139)
T PF12243_consen 82 VSMLQRDLPRIV 93 (139)
T ss_pred HHHHHHHHHHHH
Confidence 665544444443
No 382
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=43.65 E-value=3.2e+02 Score=29.42 Aligned_cols=69 Identities=9% Similarity=0.172 Sum_probs=48.6
Q ss_pred HHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhH--HHHHHHHHHHHh
Q 001749 442 ALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMV 511 (1018)
Q Consensus 442 al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~ 511 (1018)
.|-.+|+..+... .--...+..+.+-+++.++.|...|+..+++++..||..|..-. ..+...|..++.
T Consensus 28 ~IlDvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~ 98 (462)
T KOG2199|consen 28 LILDVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIE 98 (462)
T ss_pred HHHHHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHh
Confidence 3444555554433 33557888888889999999999999999999999998776433 334555555554
No 383
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=43.38 E-value=1.7e+02 Score=25.48 Aligned_cols=96 Identities=10% Similarity=0.130 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCCCC-C-hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhhhhhhHHHHHHHHHhcCCCCChH
Q 001749 899 AGAVARMIMVNPQSI-P-LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSE 976 (1018)
Q Consensus 899 ~~al~~l~~~~~~~~-~-~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 976 (1018)
-..+..|+.. ++.- + ...-+..|.....+.....+-..-......-+..+...+.+.||.+..-+..++.+++.
T Consensus 4 ~~ef~~I~~n-~~lt~~e~~~~l~~Wa~~~~v~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~n~~l--- 79 (113)
T PF02520_consen 4 RKEFFQIFQN-PNLTKAEIEEQLDEWAEKYGVQDQYNEFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAILDNKSL--- 79 (113)
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---
Confidence 3445666664 3322 2 56777788887775555444444444444445556667778888888888888876543
Q ss_pred HHHHHHHHHHHHHHHhHhhHHH
Q 001749 977 VKSQVGMAFSHLISLYGQQMQP 998 (1018)
Q Consensus 977 ~~~~~~~~l~~~~~~~~~~~~~ 998 (1018)
++.....-+..+.+++|..+..
T Consensus 80 T~~q~~~~I~~l~~~~~~e~~~ 101 (113)
T PF02520_consen 80 TRQQQQEAIDALRKQYPEEVDT 101 (113)
T ss_pred CHHHHHHHHHHHHHHCCHHHHH
Confidence 4444555556666666654433
No 384
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=43.21 E-value=1.1e+02 Score=24.17 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh-HhhHHHHHhcCCHHHHHHHHhhc
Q 001749 958 PELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLY-GQQMQPLLSNLSPAHATALAAFA 1015 (1018)
Q Consensus 958 ~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~ 1015 (1018)
|.....+.+.+.++..+..+|....-.++.....+ .......+..+|++.|..++..+
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~l 71 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQL 71 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHH
Confidence 44455555666555567788988888888877664 33336778899999999998743
No 385
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=42.72 E-value=2.1e+02 Score=28.22 Aligned_cols=84 Identities=24% Similarity=0.270 Sum_probs=51.7
Q ss_pred HHHHHHHHcc-hhchHHHHHHHHhhhcCCC-hhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHH
Q 001749 322 VIDTMALNLA-KHVFPPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAAS 399 (1018)
Q Consensus 322 ~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~ 399 (1018)
.++.++..+. -...+.+++......++.+ |..|-+...++...-+. .....+++.+-..++|....||.+.-
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHH
Confidence 3444554443 2344555555433344444 44444444555444333 22336788888889999999999999
Q ss_pred HHHHHhHhhcCH
Q 001749 400 FALGQFAEYLQP 411 (1018)
Q Consensus 400 ~~l~~l~~~~~~ 411 (1018)
|+|.+++.+.++
T Consensus 176 WaLrq~~k~~~e 187 (222)
T COG4912 176 WALRQIGKHSNE 187 (222)
T ss_pred HHHHHHHhhchH
Confidence 999999985443
No 386
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=41.60 E-value=6.4e+02 Score=29.57 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh
Q 001749 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK 280 (1018)
Q Consensus 244 ~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~ 280 (1018)
+...++..+++.+.+++....+|..|..++.+++...
T Consensus 343 ~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRA 379 (563)
T PF05327_consen 343 LADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARA 379 (563)
T ss_dssp HHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3445777777777778788889999999998887543
No 387
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=41.44 E-value=4e+02 Score=27.14 Aligned_cols=153 Identities=18% Similarity=0.247 Sum_probs=76.0
Q ss_pred hhchHHHHHHHHhhh-------cCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001749 332 KHVFPPVFEFASVSC-------QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (1018)
Q Consensus 332 ~~~~~~~~~~l~~~l-------~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 404 (1018)
..+.|.++..+.... .+++|...--|+..++..-+. +.++.+++.++-++..+ -..+|.
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~----------~A~~~li~l~~~~~~~~----~~l~GD 95 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE----------RALPPLIRLFSQDDDFL----EDLFGD 95 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh----------hhHHHHHHHHcCCcchH----HHHHcc
Confidence 445666666655443 334454344445555544322 34555666654332211 122333
Q ss_pred -hHhhcCHHHHHhhhhHHHHHHHhccCCC--hHHHHHHHHHHHHHHhhhc---cccccchHHHHHHHHHhhcCCCHhHHH
Q 001749 405 -FAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDMG---EEILPFLDPLMGKLLAALENSPRNLQE 478 (1018)
Q Consensus 405 -l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~vr~ 478 (1018)
+.+.++..+....+.=++.+.+.+.+++ .-+|..|+.++..+...-+ +.+..|+..++... +...+..
T Consensus 96 ~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~---l~~~~~~--- 169 (249)
T PF06685_consen 96 FITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYF---LERNPSF--- 169 (249)
T ss_pred hhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---hccCchH---
Confidence 1222222222223333556666677765 3489999999999887653 34555555555332 3333222
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHh
Q 001749 479 TCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV 511 (1018)
Q Consensus 479 ~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 511 (1018)
+.+.++..+ +.-|..+++|.+++.+.
T Consensus 170 ----~~~~Lv~~~---~dL~~~EL~~~I~~~f~ 195 (249)
T PF06685_consen 170 ----LWGSLVADI---CDLYPEELLPEIRKAFE 195 (249)
T ss_pred ----HHHHHHHHH---HhcCHHHhHHHHHHHHH
Confidence 334444322 22355667777777665
No 388
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.58 E-value=5.5e+02 Score=28.50 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=35.8
Q ss_pred cchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhcccccc--HHHHHHHHHHhcCC
Q 001749 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH--FADMQALLLKCLQD 170 (1018)
Q Consensus 117 ~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d 170 (1018)
..++..+..++..+.+..+...+..+-.+.=..+ +.+. -..++|.+...+.+
T Consensus 344 ~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g--lr~KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 344 NGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG--LRPKMVNGGLLPHLASLLDS 397 (791)
T ss_pred ccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc--ccHHHhhccchHHHHHHhCC
Confidence 5567788888888888999988888887753332 2222 23567787777765
No 389
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.16 E-value=5.6e+02 Score=29.75 Aligned_cols=70 Identities=7% Similarity=0.095 Sum_probs=46.8
Q ss_pred HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhc-cccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 001749 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (1018)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l 487 (1018)
.+...++..++..+.++...++..+|.++..+++.-+ ... .-.++..+...+...+..+...++.++.++
T Consensus 320 N~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~---sl~~Vr~i~~llK~rn~~v~~~~~~~~lsL 390 (704)
T KOG2153|consen 320 NLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSG---SLAIVRIINSLLKTRNYEVLPDMITTFLSL 390 (704)
T ss_pred cHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccch---hHHHHHHHHHHhhhhcccchhhHHHHHHhc
Confidence 4567888889999999877899999999999887653 222 223444555555555555666555555444
No 390
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=37.76 E-value=1.3e+02 Score=29.39 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCC---ccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhh
Q 001749 223 AVIAFEIFDELIESP---APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCP 299 (1018)
Q Consensus 223 ~~~a~~~l~~l~~~~---~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~ 299 (1018)
...++..|..++.+. .-+++.++|-++-..+...++...-+..|..++..+..++++....+.+.-.-..++|.++.
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 345566666666553 23556666655544444444444567889999999999998776655552233567888888
Q ss_pred hhccC
Q 001749 300 LLAES 304 (1018)
Q Consensus 300 ~l~~~ 304 (1018)
+|...
T Consensus 197 Ime~g 201 (315)
T COG5209 197 IMELG 201 (315)
T ss_pred HHHhh
Confidence 87544
No 391
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=37.50 E-value=4.6e+02 Score=26.71 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=33.6
Q ss_pred HhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCCC-hhhHHHHHHhhCC
Q 001749 879 RGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP-LNQVLPVLLKVLP 927 (1018)
Q Consensus 879 ~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~~-~~~~l~~~l~~lp 927 (1018)
+.|.+++.+++.+.-+|.+|++|++.+...+|..=. +-+++..++....
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l 163 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFL 163 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 344455666666778999999999999988765432 5566666666533
No 392
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=37.42 E-value=4.5e+02 Score=27.92 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=63.4
Q ss_pred CChhHHHHHHHHHHHHhhcChHHHHHhHH----------------HHHHHHHhhcC--CCChhHHHHHHHHHHHhHhhcC
Q 001749 349 ASPKYREAAVTAIGIISEGCAEWMKEKLE----------------SVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 349 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~----------------~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
+....|.||+.++.+...+..+.-...+. .++..++..=. ..++.--+-|+.++..+...-.
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 46788999999999888765432111111 23333332000 2355555566666666654321
Q ss_pred HH-----------------HHHhhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhhccccccchH--HHHHHHHHhhc
Q 001749 411 PE-----------------IVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLD--PLMGKLLAALE 470 (1018)
Q Consensus 411 ~~-----------------~~~~~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~ 470 (1018)
.. ....++.+...++..+. +.+++++..-...|...+-.+++.+..|+. ..++.|+....
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhh
Confidence 10 00112233333334344 445667766666676666666555544443 24555555432
Q ss_pred C---CCHhHHHHHHHHHHHHH
Q 001749 471 N---SPRNLQETCMSAIGSVA 488 (1018)
Q Consensus 471 ~---~~~~vr~~al~al~~l~ 488 (1018)
. .+.-|+.-+.-.+|.+.
T Consensus 210 ~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 210 QSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp --TCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHH
Confidence 2 24445554444444443
No 393
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=37.32 E-value=2.8e+02 Score=24.57 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=51.3
Q ss_pred CCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhh---cCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhh
Q 001749 311 DDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSC---QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA 386 (1018)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~ 386 (1018)
++|.+... .+..++...- ..-...++..+...+ ...+|+...-|+..+-.+....++.+...+..-...|..+
T Consensus 15 d~~gp~~~---~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l 91 (125)
T PF01417_consen 15 DPWGPPGK---LLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIREL 91 (125)
T ss_dssp SSSS--HH---HHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGG
T ss_pred CCCCcCHH---HHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhc
Confidence 34555433 3344443222 244556777777777 6788999999999999988877665554443323322222
Q ss_pred --cC--CC-----ChhHHHHHHHHHHHh
Q 001749 387 --LR--DP-----EQFVRGAASFALGQF 405 (1018)
Q Consensus 387 --l~--d~-----~~~Vr~~a~~~l~~l 405 (1018)
+. |+ ...||..|-.++.-+
T Consensus 92 ~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 92 QDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp GG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred ceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 11 22 234777776665544
No 394
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=36.74 E-value=1.4e+02 Score=28.33 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=47.0
Q ss_pred cchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhh
Q 001749 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1018)
Q Consensus 117 ~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1018)
|..+|.+...+.-.++.....+...+..... ....+.+.++.... ++..||..|++++..+-
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~-------i~~~~aLeLL~~~f---~d~~VR~yAV~~L~~~s-------- 99 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPK-------LKPEQALELLDCNF---PDEHVREFAVRCLEKLS-------- 99 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCC-------CCHHHHHHHCCCcC---CCHHHHHHHHHHHHhCC--------
Confidence 6677777777666666555556666655422 12233344443333 45889999999886532
Q ss_pred HHHHHhhHHHHHHHH
Q 001749 197 VVKFREFIPSILNVS 211 (1018)
Q Consensus 197 ~~~~~~~~~~ll~~l 211 (1018)
...+..++|++++.+
T Consensus 100 d~eL~~yL~QLVQaL 114 (171)
T cd00872 100 DDELLQYLLQLVQVL 114 (171)
T ss_pred HHHHHHHHHHHHHHH
Confidence 123567888888875
No 395
>PF14961 BROMI: Broad-minded protein
Probab=36.03 E-value=4.6e+02 Score=33.06 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=79.3
Q ss_pred HHHHhhcC-CCChhHHHHHHHHHHHhHhhcCHHHH--HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhccccc-c
Q 001749 381 HIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL-P 456 (1018)
Q Consensus 381 ~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~-~ 456 (1018)
..+...++ +....||.+|+..|..+. ..++. +.++.+-..|..+|.|+++.+...+......++...+-.+. .
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p---~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trE 240 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAP---PSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTRE 240 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCC---hhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHH
Confidence 55666665 455679999887766543 23332 57889999999999999999999998888888777654442 2
Q ss_pred chHHHHHHHHHhhcCCC---H------h----HHHHHHHHHHHHHHH---hhc----cchhhHHHHHHHHHHHHhc
Q 001749 457 FLDPLMGKLLAALENSP---R------N----LQETCMSAIGSVAAA---AEQ----AFIPYAERVLELLKIFMVL 512 (1018)
Q Consensus 457 ~~~~l~~~l~~~l~~~~---~------~----vr~~al~al~~l~~~---~~~----~~~~~~~~i~~~l~~~l~~ 512 (1018)
.+..++..+...+.+.+ + . --...+..+--+-.. ++. ...+|+++++..-..++..
T Consensus 241 iYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 241 IYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 33444444433332211 1 0 113334444333333 333 3457888888777777664
No 396
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=35.65 E-value=3.9e+02 Score=28.37 Aligned_cols=141 Identities=18% Similarity=0.118 Sum_probs=62.0
Q ss_pred CChhHHHHHHHHHHHhHhhcCHHHH-HhhhhH------------HHHHHHhcc------CCChHHHHHHHHHHHHHHhhh
Q 001749 390 PEQFVRGAASFALGQFAEYLQPEIV-SHYESV------------LPCILNALE------DESDEVKEKSYYALAAFCEDM 450 (1018)
Q Consensus 390 ~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~------------l~~l~~~l~------~~~~~v~~~a~~al~~l~~~~ 450 (1018)
....+|.+|++|+..+...-.. .+ ..+... ...++..|. +.++--...|+.++..++...
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~-~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn 128 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEE-GQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDN 128 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HH-HHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-
T ss_pred cchHHHHHHHHHHHHHHhcCHH-HHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcC
Confidence 3677899999999998865321 11 111111 112333333 122323345666666665432
Q ss_pred c-----------------cccccchHHHHHHHHHhhc-CCCHhHHHHHHHHHHHHHHHhhccchhhHH--HHHHHHHHHH
Q 001749 451 G-----------------EEILPFLDPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQAFIPYAE--RVLELLKIFM 510 (1018)
Q Consensus 451 ~-----------------~~~~~~~~~l~~~l~~~l~-~~~~~vr~~al~al~~l~~~~~~~~~~~~~--~i~~~l~~~l 510 (1018)
. +.....++.+...|...+. ..+..++...+..+..-...++..+..++. .-++.|.+..
T Consensus 129 ~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 129 PEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHh
Confidence 1 1111223333333333333 335666666666665555555555555552 2455555554
Q ss_pred hccCchhhhhHHHHHHHHHHH
Q 001749 511 VLTNDEDLRSRARATELLGLV 531 (1018)
Q Consensus 511 ~~~~~~~~~~r~~a~~~l~~l 531 (1018)
...++.+.-+++-+.-.+|.+
T Consensus 209 ~~~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHH
Confidence 333344444555444444443
No 397
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=35.00 E-value=9.2e+02 Score=29.45 Aligned_cols=161 Identities=16% Similarity=0.088 Sum_probs=81.1
Q ss_pred cchHHHHHHhhcCC-----ChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhccc
Q 001749 117 PDLLPFLFQFSQSE-----QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (1018)
Q Consensus 117 ~~ll~~l~~~~~s~-----~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~ 191 (1018)
..+...+.+++.++ ++..|..--.++..+.....-.+ .+.++|.+..++-+ +++++|.-|...+..+-+..
T Consensus 76 ~~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~~---~~~~lPG~~~~Lf~-~~~~~r~WA~~~~~~l~~~~ 151 (727)
T PF12726_consen 76 RALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLKL---PKELLPGMTYFLFD-GNPERRRWAERWWQRLKRPP 151 (727)
T ss_pred chHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCccc---cccccchhhhhhhc-CCHHHHHHHHHHHHHcCCCc
Confidence 45777777777653 22233333334444443322111 16677888888988 78999999999998876531
Q ss_pred CChhhHHHHH-hhHHHHHHHHHHH-hhcCCHHHH---HHHHHHHHHHhcCCccchhHhHHH-----HHHHHHHHhcCCCC
Q 001749 192 NDGAEVVKFR-EFIPSILNVSRQC-LASGEEDVA---VIAFEIFDELIESPAPLLGDSVKS-----IVHFSLEVSSSHNL 261 (1018)
Q Consensus 192 ~~~~~~~~~~-~~~~~ll~~l~~~-l~~~~~~~~---~~a~~~l~~l~~~~~~~~~~~~~~-----li~~l~~~~~~~~~ 261 (1018)
.. .....+. .+.+.+...+... -+..+++.. ...+..+....+ .+.+..++.. ++.+++..+....
T Consensus 152 ~~-~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~ld--~~~i~~~l~~~~~~~i~~L~~~hL~~~~- 227 (727)
T PF12726_consen 152 YS-ITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLLD--KEQITHSLRALELDPIYRLLLNHLSSNL- 227 (727)
T ss_pred cC-CchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHcc--HHHHHHHHhccccchHHHHHHHHhhccc-
Confidence 00 0011121 1222233332222 111222222 233333333222 2223333222 5556666555442
Q ss_pred ChHHHHHHHHHHHHHHHHhHHHhhh
Q 001749 262 EPNTRHQAIQIISWLAKYKYNSLKK 286 (1018)
Q Consensus 262 ~~~~r~~a~~~l~~~~~~~~~~~~~ 286 (1018)
++.-...+.++..+.+..+..+..
T Consensus 228 -~~~l~~lL~~l~~lL~k~~~~FW~ 251 (727)
T PF12726_consen 228 -SPPLPILLRCLSILLEKLGSDFWD 251 (727)
T ss_pred -chhHHHHHHHHHHHHHhCHHHHhc
Confidence 344556677888888887776655
No 398
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=34.35 E-value=9.2e+02 Score=29.27 Aligned_cols=141 Identities=9% Similarity=0.040 Sum_probs=86.3
Q ss_pred HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 001749 370 EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (1018)
Q Consensus 370 ~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (1018)
..+++...+++.-+++...|..|.-|..+--+ .++..-+..+.+.-.-+...+.+-+......-...+..+...++..
T Consensus 9 ~alR~RyKkLV~~iFPr~~e~gpn~s~m~kL~--~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~ 86 (819)
T KOG1877|consen 9 PALRPRYKKLVDNIFPRSPEDGPNKSKMEKLT--FYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQA 86 (819)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccccHHHHH--HHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHH
Confidence 34455566777777776555554444332211 1111111222222233334444444444334445678889999999
Q ss_pred hccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhhcc--chhhHHHHHHHHHHHHhc
Q 001749 450 MGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA--FIPYAERVLELLKIFMVL 512 (1018)
Q Consensus 450 ~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~~~--~~~~~~~i~~~l~~~l~~ 512 (1018)
|.+.+..|...++..+..+|.++..+++..+..++..++...++. ..--|+.+++.+.++...
T Consensus 87 C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he 151 (819)
T KOG1877|consen 87 CKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHE 151 (819)
T ss_pred HhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhc
Confidence 998888888899999999999998888888888888887665542 222245666666665544
No 399
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=34.08 E-value=4.2e+02 Score=25.20 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=24.6
Q ss_pred HHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcC
Q 001749 38 PALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (1018)
Q Consensus 38 ~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~ 91 (1018)
..-++++... .++.||++|.-.|++ ++++........|.++|.-|+
T Consensus 72 ~~aLeLL~~~f~d~~VR~yAV~~L~~--------~sd~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 72 EQALELLDCNFPDEHVREFAVRCLEK--------LSDDELLQYLLQLVQVLKYEP 118 (171)
T ss_pred HHHHHHCCCcCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHccc
Confidence 3344444332 356666666655543 245555556666666666553
No 400
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=33.74 E-value=4.5e+02 Score=25.52 Aligned_cols=135 Identities=10% Similarity=0.119 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChh--HHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhc
Q 001749 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF--VRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL 428 (1018)
Q Consensus 351 ~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~--Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l 428 (1018)
.++|..|..++..+...... -.++++ -.+.+...+..++.. .-..+.++...++.-+. +..|...++..++...
T Consensus 21 DrvR~~A~~~l~~ll~~~~~-~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~--~~~y~~~ll~Glv~S~ 96 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDP-TIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD--LPEYRYSLLSGLVVSA 96 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCc-cccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc--cHHHHHHHHhHHHhcC
Confidence 57899999998888843211 001111 012222322222110 01122233333332221 2357778888888888
Q ss_pred cCCChHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCC--CHhHHHHHHHHHHHHHHH
Q 001749 429 EDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAA 490 (1018)
Q Consensus 429 ~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~al~~l~~~ 490 (1018)
...+..+...+..+|-.++... ..-...+..++..+..++++. +..+---+++++..+...
T Consensus 97 G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 97 GGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred CCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 8887788888888888888754 111123455666666666553 222333445555544433
No 401
>PF14961 BROMI: Broad-minded protein
Probab=32.56 E-value=1e+03 Score=30.29 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=78.2
Q ss_pred HHHHHHhhcCCCh-HHHHHHHHHHHHhhhhhhccc-cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhhH
Q 001749 120 LPFLFQFSQSEQE-EHREVALILFSSLTETIGQTF-RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (1018)
Q Consensus 120 l~~l~~~~~s~~~-~~r~~al~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~ 197 (1018)
++.+.+.+....| +.|..|++.|..+.-. +.+ .+.++.+..-+..+|+| +++.+...+++...++....+-....
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~S--DVls~E~W~~L~~~L~~~LsD-pD~~is~~~L~f~Ak~fssSpl~~tr 239 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPPS--DVLSCESWSVLRENLTDALSD-PDPEISDASLRFHAKMFSSSPLNMTR 239 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChh--hccccccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCCchhhhH
Confidence 3455555554444 5788888888776522 111 36788999999999999 99999999999999988776532222
Q ss_pred HHHHhhHHHHHHHHHHH----------h--hcCCHHHHHHHHHHHHHHhcCCcc----chhHhHHHHHHHHHHHhc
Q 001749 198 VKFREFIPSILNVSRQC----------L--ASGEEDVAVIAFEIFDELIESPAP----LLGDSVKSIVHFSLEVSS 257 (1018)
Q Consensus 198 ~~~~~~~~~ll~~l~~~----------l--~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~li~~l~~~~~ 257 (1018)
..+..++..+-..+... + ...+-...-..++.|.++-...++ +-++++..+++-.+.++.
T Consensus 240 EiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs 315 (1296)
T PF14961_consen 240 EIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLS 315 (1296)
T ss_pred HHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhc
Confidence 22333332222211000 0 001112234556666666544333 445667777766555544
No 402
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.67 E-value=3.6e+02 Score=24.64 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 001749 157 FADMQALLLKCLQDETSNRVRIAALKAIGSF 187 (1018)
Q Consensus 157 ~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~ 187 (1018)
.+.+...+..+|.+ ++++|+..|++|+..+
T Consensus 15 ~~~l~~~~~~LL~~-~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSS-RDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 45677788889998 9999999999999775
No 403
>PLN03205 ATR interacting protein; Provisional
Probab=31.59 E-value=6.9e+02 Score=26.96 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-hc--cc----cccHHHHHHHHHHhcC
Q 001749 97 RASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI-GQ--TF----RPHFADMQALLLKCLQ 169 (1018)
Q Consensus 97 ~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~-~~--~~----~~~~~~l~~~l~~~l~ 169 (1018)
.++.++...+.+.....-....++..|+.++.-++......++.+|..+.+.. ++ .| ...+..++.+..+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 55666666665543221245678888999888888888888999998888764 22 12 2345566766666544
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHhcCC-----------
Q 001749 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIFDELIESP----------- 237 (1018)
Q Consensus 170 d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~----------- 237 (1018)
......||..|+..+.-++.......+..+|.. ..+++.+.+.+..+ .-.+++.++..|.-+....
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~--~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~ 459 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVS--KEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHE 459 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcc--hHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCc
Confidence 336778999998877766654433333334321 12333333334322 2345556655554433210
Q ss_pred ----------c--c-chhHhHHHHHHHHHHHhc---CCCCChHHHHHHHHHHHHHHH
Q 001749 238 ----------A--P-LLGDSVKSIVHFSLEVSS---SHNLEPNTRHQAIQIISWLAK 278 (1018)
Q Consensus 238 ----------~--~-~~~~~~~~li~~l~~~~~---~~~~~~~~r~~a~~~l~~~~~ 278 (1018)
. . .-..-+..++..+-+++. +...+.+.+..++-.+..++.
T Consensus 460 e~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflAS 516 (652)
T PLN03205 460 EKNSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAAS 516 (652)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHh
Confidence 0 0 111223334444433332 233455777888777776665
No 404
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=31.45 E-value=6.5e+02 Score=26.61 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=75.7
Q ss_pred hhhHHHHHHHhccCCChH-HHHHHHHHHHHHHhhhccccccchHHHHHHHHHhhcCCCHhHHHHHHHHHHHHHHHhh--c
Q 001749 417 YESVLPCILNALEDESDE-VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--Q 493 (1018)
Q Consensus 417 ~~~~l~~l~~~l~~~~~~-v~~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~al~~l~~~~~--~ 493 (1018)
++.++..+.+.+....+. +-...+.++..++....+......-.++..|......+.+ +|...+..+-.++..++ .
T Consensus 63 le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~-aR~~Vy~~lv~la~~~~~~~ 141 (378)
T KOG2753|consen 63 LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTP-ARYQVYMSLVTLAASCKLIE 141 (378)
T ss_pred HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCch-HHHHHHHHHHHHHhhcceee
Confidence 455555555555544332 3333344444444433222211233455555555555544 89999888888877765 3
Q ss_pred cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHhccCCCC-hhHHHHHHHHHHH
Q 001749 494 AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF-SELREYTHGFFSN 572 (1018)
Q Consensus 494 ~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~l~~ 572 (1018)
.+.|-++++-..+... . .+.++.+ +.+-.+.+++-...-......+|..++.....++ ...|+.+..|+.+
T Consensus 142 ~i~~~lk~~~~~lkew-~-~~vedqr------el~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~ 213 (378)
T KOG2753|consen 142 YIVPNLKQLDDWLKEW-N-ISVEDQR------ELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAMRCVVE 213 (378)
T ss_pred eecccHHHHHHHHHhC-C-CCHHHHH------HHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 4445554444433321 1 1111111 1222233333211112334567777777777665 6788989888877
Q ss_pred HHH
Q 001749 573 IAG 575 (1018)
Q Consensus 573 l~~ 575 (1018)
...
T Consensus 214 av~ 216 (378)
T KOG2753|consen 214 AVK 216 (378)
T ss_pred HHc
Confidence 664
No 405
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=30.51 E-value=1.4e+02 Score=21.06 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccc
Q 001749 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYA 110 (1018)
Q Consensus 75 ~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~ 110 (1018)
..+.+|+.+++.|.. +++..|..+..+|+.+.+..
T Consensus 4 ~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 4 NLEYLKNVLLQFLES-REPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHTT-SS---HHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHCCC
Confidence 567899999999986 55788888999999887653
No 406
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=29.88 E-value=8.3e+02 Score=27.89 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=77.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHH---------HHHHHHhcCCChhHHHHHHHHHHHhh------hhhhcc
Q 001749 6 ELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVP---------ALVQHLRTAKTPNVRQLAAVLLRKKI------TGHWAK 70 (1018)
Q Consensus 6 ~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~---------~l~~~l~~~~~~~~R~~a~~~l~~~i------~~~w~~ 70 (1018)
.++.+-++++++..+..|-.+|.++..+|.|+. .|..++.+...-..+.+=+..|+... ...|..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 466777889999999889999999888876543 34444444322111111122222221 135888
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCc---cchHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 001749 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW---PDLLPFLFQFSQSEQEEHREVALILFSSLTE 147 (1018)
Q Consensus 71 l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w---~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 147 (1018)
++......+-... .... -+..+-..+-..+..++........| .-.+..++..++..+......|+..+..+..
T Consensus 166 ~~~~fV~~~a~~V--~~~~-~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 166 VSNDFVVSMASYV--NAKR-EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred cccHHHHHHHHHH--hhhh-hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 8876655544333 2222 12333344444555444322111233 2235667776666555555557777777765
Q ss_pred hhhcc
Q 001749 148 TIGQT 152 (1018)
Q Consensus 148 ~~~~~ 152 (1018)
..++.
T Consensus 243 ~a~~~ 247 (713)
T KOG2999|consen 243 KAPDD 247 (713)
T ss_pred hCChH
Confidence 55543
No 407
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=29.64 E-value=2.1e+02 Score=24.42 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHhhcCHHHHHhhh--hHHHHHHHhc--cCCChHHHHHHHHHHHHHHhhhcc
Q 001749 395 RGAASFALGQFAEYLQPEIVSHYE--SVLPCILNAL--EDESDEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l--~~~~~~v~~~a~~al~~l~~~~~~ 452 (1018)
|......++.++-.. +..++.+. .-+|.++... .+.+|.+|+.|..++.++++...+
T Consensus 3 K~~lvrlianl~~~~-~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKN-KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 445566777777544 23333221 2266666544 456788999999999999998754
No 408
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=29.32 E-value=7.7e+02 Score=26.79 Aligned_cols=142 Identities=11% Similarity=0.133 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcCCchhhHHH
Q 001749 689 TVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVI 768 (1018)
Q Consensus 689 ~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1018)
..+..+++.++.|.|.++..-.+..+-..+..-.-.. ...++.+.+.+.+++..+..-....+. .+.-.+..+
T Consensus 141 ~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~-~~~I~~L~~~Lc~~i~d~~~~~~l~~~------p~~~~~~D~ 213 (356)
T PF03542_consen 141 EWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFL-GADIDQLRNALCSMICDRSFLESLSNK------PTGFKRADL 213 (356)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhc-cCcHHHHHHHHHHHHhcccccccccCC------CCCCCHHHH
Confidence 3455677788889999988888877777766422110 111566666665655543211000000 011233445
Q ss_pred HHHHHhHHHHHHHHhCCChHHHH-HHHHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHH
Q 001749 769 MDAVSDLLPAFAKSMGPHFAPIF-AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLK 842 (1018)
Q Consensus 769 ~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 842 (1018)
...+...+..+..+.. .|.+.- +.++..+...+.+.. -..++-.+.-++--++....++++.++..+.+
T Consensus 214 ~~~~~~~Ls~LisYh~-~~~k~~qd~iV~~l~~GL~s~~----a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~ 283 (356)
T PF03542_consen 214 QVCVFPVLSALISYHS-HFSKQEQDEIVRALESGLGSKT----AKPCIHALTICCYEMPDSMKKLLPSILLKLSK 283 (356)
T ss_pred HHHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 5566666777665543 222222 235655555554421 13344444444444555555555555544443
No 409
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=28.79 E-value=1e+03 Score=27.99 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=53.7
Q ss_pred HHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 001749 324 DTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALG 403 (1018)
Q Consensus 324 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 403 (1018)
-.+++..|.++.-..+.. .+.=.++..|.+.-+|+|-++-..+.. .++..+.+...|.+..|-..|..++|
T Consensus 630 iAMgeeig~eM~lR~f~h---~l~yge~~iRravPLal~llsvSNPq~------~vlDtLsk~shd~D~eva~naIfamG 700 (878)
T KOG2005|consen 630 IAMGEEIGSEMVLRHFGH---LLHYGEPHIRRAVPLALGLLSVSNPQV------NVLDTLSKFSHDGDLEVAMNAIFAMG 700 (878)
T ss_pred hhhhhhhhhHHHHHHHHH---HHHcCCHHHHHHHHHHHhhhccCCCcc------hHHHHHHHhccCcchHHHHHHHHHhc
Confidence 344455554444333333 344456788999989999888765432 57788888899999999999999998
Q ss_pred HhHhhc
Q 001749 404 QFAEYL 409 (1018)
Q Consensus 404 ~l~~~~ 409 (1018)
-+....
T Consensus 701 LiGAGT 706 (878)
T KOG2005|consen 701 LIGAGT 706 (878)
T ss_pred cccCCc
Confidence 876543
No 410
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=28.76 E-value=4.8e+02 Score=24.23 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=26.9
Q ss_pred HHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcC
Q 001749 37 VPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (1018)
Q Consensus 37 ~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~ 91 (1018)
....++++... .++.+|++|.-.|++ .+++........|.++|+-|+
T Consensus 71 ~~~aL~LL~~~~~~~~vr~yAv~~L~~--------~~~~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 71 PEDALELLSPKYPDPVVRQYAVRVLES--------ASDDELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHcCCcCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHhccc
Confidence 33444554432 356777777655543 255566666666777776554
No 411
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=28.76 E-value=1.5e+03 Score=30.09 Aligned_cols=112 Identities=19% Similarity=0.236 Sum_probs=70.5
Q ss_pred hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCH
Q 001749 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (1018)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 411 (1018)
+..++.++.....++.+++...+..+...+..+...+..... .+++..++..+.+.+..-..+|+..|..++...+.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~q---qeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQ---QEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhH---HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 568889999999999999999999999999888887744322 24555555544444444447889999999986544
Q ss_pred HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 001749 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFC 447 (1018)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~ 447 (1018)
.+.+ +...+..++..+.+-+..--......+..++
T Consensus 507 ~l~~-fa~~l~giLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 507 ELQP-FATFLKGILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp HHHH-THHHHHGGGGGGGG--HHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4443 3445555556665544332223455555544
No 412
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=28.68 E-value=4.9e+02 Score=24.34 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCCccchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHH
Q 001749 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN 282 (1018)
Q Consensus 221 ~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~ 282 (1018)
+...-++.++.++.++..-..+..-+.++..+......+..+..+...|+..+..++..++.
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ 93 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPK 93 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHH
Confidence 45566778888888875433344555566655555555555778888899888888876654
No 413
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=28.60 E-value=1.2e+02 Score=29.62 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=42.1
Q ss_pred cchhhhhHhHHHHHhhcCcchHhh--HHhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 001749 809 QDRTMVVATLAEVARDMGSPIAAY--VDRVMPLVLKELASPDAMNRRNAAFCVGELC 863 (1018)
Q Consensus 809 ~~r~~a~~~l~~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~ 863 (1018)
-.|..++|++|.++++..+.+..+ -..++|..++.+..+..--+-.|++.++.+.
T Consensus 161 yLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil 217 (315)
T COG5209 161 YLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKIL 217 (315)
T ss_pred eeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 358899999999999866655544 3478899999888777666777777777664
No 414
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=28.35 E-value=2.3e+02 Score=26.81 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=43.9
Q ss_pred cchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcccCChhh
Q 001749 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (1018)
Q Consensus 117 ~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~ 196 (1018)
|..+|.++..+.=.++....-+..++..... ......+.++.... ++..||..|++++..+-
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~-------i~~~~aLeLL~~~f---~~~~VR~yAV~~L~~~s-------- 106 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAK-------IDIEDALELLSPYF---TNPVVRKYAVSRLKLAS-------- 106 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCC-------CCHHHHHHHcCccC---CCHHHHHHHHHHHHhCC--------
Confidence 4555555555433344444445555555431 22334444444333 45789999999987632
Q ss_pred HHHHHhhHHHHHHHHH
Q 001749 197 VVKFREFIPSILNVSR 212 (1018)
Q Consensus 197 ~~~~~~~~~~ll~~l~ 212 (1018)
...+..++|++++.+.
T Consensus 107 d~eL~~yL~QLVQaLK 122 (166)
T cd00870 107 DEELLLYLLQLVQALK 122 (166)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 1235668888888753
No 415
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=28.21 E-value=2.3e+02 Score=27.29 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=40.2
Q ss_pred CChhHHHHHHHHHHHHhhcCh--HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001749 349 ASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFA 406 (1018)
Q Consensus 349 ~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 406 (1018)
.+......++.|+..+..... +.+.. -+..+..|..+|..+++.+|..++..|+.+|
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~-~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLS-HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHC-SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHc-CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 455666778888888887532 11111 2467888999999999999999999999876
No 416
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=27.76 E-value=2.2e+02 Score=26.85 Aligned_cols=59 Identities=29% Similarity=0.497 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHHcccCCCCCc-----cchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccc
Q 001749 91 HSAPVRRASANVVSIIAKYAVPAGEW-----PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153 (1018)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~w-----~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~ 153 (1018)
+|..| +++++..+....-+ +.| ..++|.+..+++|....+...|+..+..+...+++.+
T Consensus 41 ~D~sv---lvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I 104 (164)
T PF13925_consen 41 NDPSV---LVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVI 104 (164)
T ss_pred CCchH---HHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544 36777777633223 345 7799999999999999999999999999988776543
No 417
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=27.63 E-value=3e+02 Score=24.48 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=41.5
Q ss_pred HHHHHHHHcccCCCCCccchHHHHHHhhcCC--ChHHHHHHHHHHHHhhhhhhccccccH
Q 001749 100 ANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTETIGQTFRPHF 157 (1018)
Q Consensus 100 ~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~--~~~~r~~al~~l~~l~~~~~~~~~~~~ 157 (1018)
+..+..|++..+....+++++..+...+.+. +|.+..-|+.++..++.+.++.+...+
T Consensus 19 ~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~ 78 (123)
T cd03571 19 GTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDA 78 (123)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445566554333357889999999988765 788888999999999988776554433
No 418
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=27.42 E-value=3.9e+02 Score=26.65 Aligned_cols=88 Identities=10% Similarity=0.088 Sum_probs=63.5
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhhhccc-cccchHHHHHHHHHhh-cCCCHhHHHHHHHHHHHHHHHhhc--cchhh
Q 001749 423 CILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAAL-ENSPRNLQETCMSAIGSVAAAAEQ--AFIPY 498 (1018)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l-~~~~~~vr~~al~al~~l~~~~~~--~~~~~ 498 (1018)
.+.+.|.+.++.+|.+|...+..++...... -..-+..+...|.-++ -+..+.+++....-|+.+....+. ....|
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Confidence 3566777888999999999999998876443 2233456777777665 345788999999999999988875 44566
Q ss_pred HHHHHHHHHHHH
Q 001749 499 AERVLELLKIFM 510 (1018)
Q Consensus 499 ~~~i~~~l~~~l 510 (1018)
+..++..+..-.
T Consensus 84 ~~~f~~tm~rEW 95 (217)
T PF05997_consen 84 LKAFWETMRREW 95 (217)
T ss_pred HHHHHHHHHHHH
Confidence 666666555433
No 419
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=26.81 E-value=4.3e+02 Score=23.10 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=38.2
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhHhhcCHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHhhhcc
Q 001749 383 VLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (1018)
Q Consensus 383 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~ 452 (1018)
.++.|......++....+++...- +...++..+.+.+....+.-+-.....+..++.++..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~---------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHAS---------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhh
Confidence 344455566677777777776442 2335666666666555555566778888888887744
No 420
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=26.54 E-value=4.6e+02 Score=24.53 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001749 203 FIPSILNVSRQCLASGEEDVAVIAFEI 229 (1018)
Q Consensus 203 ~~~~ll~~l~~~l~~~~~~~~~~a~~~ 229 (1018)
+-..++-++++.+-..+.+.|..|...
T Consensus 129 lrd~lilvLRKamf~r~~~~R~~Av~G 155 (158)
T PF14676_consen 129 LRDSLILVLRKAMFSRELDARQMAVNG 155 (158)
T ss_dssp HHHHHHHHHHHHTT-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 334455555555555555555555443
No 421
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=26.39 E-value=1.2e+02 Score=23.85 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhh
Q 001749 120 LPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (1018)
Q Consensus 120 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 150 (1018)
++.++.+..|..+..|..|+.+|+.|+....
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999987543
No 422
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=26.18 E-value=8.9e+02 Score=26.53 Aligned_cols=305 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCC-CCCcCCchhhHHHHHHHHhHHHHHH
Q 001749 702 DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSD-IEDDDDTAHDEVIMDAVSDLLPAFA 780 (1018)
Q Consensus 702 ~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~ 780 (1018)
...++.++.+.-+.+-+............+.+++.+...+-+..+.+..+...| +|+++..+..+.-+..+-+++-.+.
T Consensus 81 ~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~nifR~lpp~~n~~~~d~eedEp~le~awphLqlvye~~Lrf~ 160 (457)
T KOG2085|consen 81 KGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVNIFRTLPPSVNPTGFDYEEDEPVLEPAWPHLQLVYEFLLRFL 160 (457)
T ss_pred ccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCcccCCCcCCccccCcccCCCchHHHHHHHHHHHHH
Q ss_pred HHhCC---ChHHHHHH-HHHHHHHhhccCCCccchhhhhHhHHHHHhhcCcchHhhHHhhHHHHHHhcC-CCChHHHHHH
Q 001749 781 KSMGP---HFAPIFAK-LFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA-SPDAMNRRNA 855 (1018)
Q Consensus 781 ~~~~~---~~~~~~~~-l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a 855 (1018)
.+-.- ..+.|+++ ++-.++.+.+++++ ..|...-.+|..+-...-....-.-..+-..+++-+. .....-...-
T Consensus 161 ~sp~~d~~vaK~yid~~FvlkLLdLFdSEDp-RERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaEL 239 (457)
T KOG2085|consen 161 ESPDFDPSVAKKYIDQKFVLKLLDLFDSEDP-REREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAEL 239 (457)
T ss_pred hCcccCHHHHHHHhhHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHH
Q ss_pred HHHHHHHHhhcCcchhhHHHHHH-HhhhhccCCCCCCchhHhHHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHh
Q 001749 856 AFCVGELCKNGGESALKYYGDIL-RGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEE 934 (1018)
Q Consensus 856 ~~~lg~l~~~~~~~~~~~~~~il-~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e 934 (1018)
...+|.++..-.--.+.-..-.+ +.|.++-. .+.-..-.....-|+-.++...|... +.++-.+++..|.+....|
T Consensus 240 LEIlgSiIngfAlPlKEEhkiFL~rvLipLhk-~k~l~~yh~QLaYcivQfveKd~kl~--~~VIrglLK~WP~tnS~KE 316 (457)
T KOG2085|consen 240 LEILGSIINGFALPLKEEHKLFLVRVLIPLHK-PKSLSLYHKQLAYCIVQFVEKDPKLT--ETVIRGLLKYWPKTNSSKE 316 (457)
T ss_pred HHHHHHhcCcccCcchhHHHHHHHHhhhcccc-CCCccccccccceeeeeeeccCcccc--HHHHHHHHHhcCCCCCcce
Q ss_pred hHHHHHHHHHHHhhcChhhhhhhhHHHHHHHHHhcCCCC-----------------------------------------
Q 001749 935 SMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEE----------------------------------------- 973 (1018)
Q Consensus 935 ~~~~~~~l~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~----------------------------------------- 973 (1018)
.......=--|=.-++...+.....+.+.++.++.++--
T Consensus 317 VmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~h 396 (457)
T KOG2085|consen 317 VMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSH 396 (457)
T ss_pred eeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHH
Q ss_pred -ChHHHHHHHHHHHHHHHHhHhhHHHHHhcCCHHHHHH
Q 001749 974 -SSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATA 1010 (1018)
Q Consensus 974 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 1010 (1018)
+......+.+.++.|.+-.+..|+.+.+.+..+.++.
T Consensus 397 WN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~ 434 (457)
T KOG2085|consen 397 WNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKE 434 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
No 423
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=25.51 E-value=8.6e+02 Score=26.11 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=43.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc-cchhHhHHH------HHHHHHHHhcCCCCC---------hHHHHHHHH
Q 001749 208 LNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLGDSVKS------IVHFSLEVSSSHNLE---------PNTRHQAIQ 271 (1018)
Q Consensus 208 l~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~------li~~l~~~~~~~~~~---------~~~r~~a~~ 271 (1018)
+..+-+.++.........+++.|.+++.... ..-...+.. .++.++..-. .+.+ +.+|...+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~-~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRK-KEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhcccc-ccccccccccccCcCHHHHHHH
Confidence 4445556676777777888999999988433 322222221 1111111111 0011 289999999
Q ss_pred HHHHHHHHhHHH
Q 001749 272 IISWLAKYKYNS 283 (1018)
Q Consensus 272 ~l~~~~~~~~~~ 283 (1018)
||.++.+..+..
T Consensus 137 F~Lsfl~~~~~~ 148 (330)
T PF11707_consen 137 FWLSFLSSGDPE 148 (330)
T ss_pred HHHHHHccCCHH
Confidence 999998765443
No 424
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=25.48 E-value=1.1e+03 Score=27.46 Aligned_cols=406 Identities=13% Similarity=0.115 Sum_probs=194.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCH------------HHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHH
Q 001749 70 KLSPQLKQLVKQSLIESITLEHSA------------PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREV 137 (1018)
Q Consensus 70 ~l~~~~~~~i~~~Ll~~l~~e~~~------------~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~ 137 (1018)
.++++.-+.+-+..+..+... ++ .+-...|+++|.+.+..+. ..-..++..|....++.+ ..+..
T Consensus 27 ~l~~~l~~~le~i~F~~lk~~-d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~-sVsdRF~~eL~~~~~~~~-~~~~~ 103 (552)
T PF14222_consen 27 SLTEELGDKLEEIVFDQLKTA-DPVSEQPSTSPLRLANWDLFAELLGVLSEIRFV-SVSDRFIAELEKLRKDSN-DAESK 103 (552)
T ss_pred CCCHHHHHHHHHHHHHHHhcc-CccccccccchhHHHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHhcccCC-chHHH
Confidence 466777777777777777642 22 3445567777777765443 233556666666664222 22222
Q ss_pred HHHHHHHh---h-hhhh-ccccccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHhhcccC----ChhhHHHHHhhHHHH
Q 001749 138 ALILFSSL---T-ETIG-QTFRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTN----DGAEVVKFREFIPSI 207 (1018)
Q Consensus 138 al~~l~~l---~-~~~~-~~~~~~~~~l~~~l~~~l~d~-~~~~vr~~a~~~l~~~~~~~~----~~~~~~~~~~~~~~l 207 (1018)
...++..+ - ...+ +.+ +..-+++.-+.+...+. ...++|.+-+..+..++.-.. .......+.+.+..+
T Consensus 104 ~~~li~GMr~lrlk~~p~e~~-e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i 182 (552)
T PF14222_consen 104 IELLIMGMRYLRLKMYPEEAF-EESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETI 182 (552)
T ss_pred HHHHHhhcceeeecCCCHHHH-HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHH
Confidence 22222221 0 1112 111 11223444444444442 356699998998888753221 111123445555555
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-ccchhHhHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhh
Q 001749 208 LNVSRQCLASGEEDVAVIAFEIFDELIESP-APLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLK 285 (1018)
Q Consensus 208 l~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~-~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~ 285 (1018)
...+.+.+.. +.....++-....+.-.. +.+|..+-. .+++.+..-++++ ..|..+++.+..++-.+- ..+
T Consensus 183 ~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk----~~r~~~l~~l~RLlWvYL-~~r 255 (552)
T PF14222_consen 183 YPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK----ETRPVALECLSRLLWVYL-VYR 255 (552)
T ss_pred HHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh----hhhHHHHHHHHHHHHHHH-hcc
Confidence 5544444432 333444566666665543 556666555 5666655444433 667777776665543222 011
Q ss_pred h-------cCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcchhchH-HHHHHHHhhhc-----CCChh
Q 001749 286 K-------HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFP-PVFEFASVSCQ-----NASPK 352 (1018)
Q Consensus 286 ~-------~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~~l~-----~~~~~ 352 (1018)
. ...+..++..++|.-...-- .-|..+-..-.+.+..++....+..+. .+++++..... +-++.
T Consensus 256 ~~Es~n~T~krL~~i~~~lfp~~kk~~i---~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pE 332 (552)
T PF14222_consen 256 CPESLNNTTKRLDSIFKLLFPKGKKGWI---PRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPE 332 (552)
T ss_pred cCCCchHHHHHHHHHHHHHccCCCCccc---CCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChh
Confidence 0 01345566666644332100 001122223344455555544454543 35555543332 23466
Q ss_pred HHHHHHHHHHHHhhcChHHHHH-------------------hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhcCHHH
Q 001749 353 YREAAVTAIGIISEGCAEWMKE-------------------KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (1018)
Q Consensus 353 ~r~aal~~l~~l~~~~~~~~~~-------------------~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 413 (1018)
.--.++.++-.+.......-.+ ...+-++ .....++.....-...+.+++++...+...+
T Consensus 333 Rm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~ 411 (552)
T PF14222_consen 333 RMIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNTLRVKYTPSNEYLS-NEIAKNSGIREYYEEFCRALGKILRLCDNTF 411 (552)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcccccccCccccccc-chhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777766642210000 0000111 0011112222222344555666555443221
Q ss_pred HHhhhhHHHHHHHh-------------ccCCChHHHHHHHHHHHHHHhhhccccccc--hHHHHHHHHHhhcCCCHhHHH
Q 001749 414 VSHYESVLPCILNA-------------LEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKLLAALENSPRNLQE 478 (1018)
Q Consensus 414 ~~~~~~~l~~l~~~-------------l~~~~~~v~~~a~~al~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~vr~ 478 (1018)
-.. .+++.-... ..+....-+......+...++..+--+... ...+++.|.+..-+.++.+++
T Consensus 412 G~~--~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~ 489 (552)
T PF14222_consen 412 GSQ--LWLDEKQSSSKPKTPFSSFSFGRNDDMVTDQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRE 489 (552)
T ss_pred chh--hccCcccccCCCCCCcccccccccccccccccchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHH
Confidence 110 000000000 001111111333456666666665433322 357888888888888999999
Q ss_pred HHHHHHHHHHHHhh
Q 001749 479 TCMSAIGSVAAAAE 492 (1018)
Q Consensus 479 ~al~al~~l~~~~~ 492 (1018)
.|..++-+++...+
T Consensus 490 ~A~~aLk~la~~~p 503 (552)
T PF14222_consen 490 SAAQALKRLARDKP 503 (552)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999987654
No 425
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=24.87 E-value=7.8e+02 Score=25.36 Aligned_cols=196 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhcCChHHHHHHHhhhhccCCCCCCCCCCcHHHHHHHHHH
Q 001749 245 VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVID 324 (1018)
Q Consensus 245 ~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~ 324 (1018)
+..++..+.+.-...+.+..+-..-++.+..+....................+...+..|.. +.+--+...+.
T Consensus 16 ~~~i~~KL~efn~~~~~~~~l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~-------~~~fP~lDLlR 88 (268)
T PF08324_consen 16 LDKILKKLKEFNEKLQKELKLSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLSWPP-------ESRFPALDLLR 88 (268)
T ss_dssp HHHHHHHHHHHHTTSHCCT-S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-C-------CC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCC-------ccchhHHhHHH
Q ss_pred HHHHHcc-hhch--------HHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcCh--HHHHHhHH-HHHHHHHhhcCCC--
Q 001749 325 TMALNLA-KHVF--------PPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--EWMKEKLE-SVLHIVLGALRDP-- 390 (1018)
Q Consensus 325 ~l~~~~~-~~~~--------~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~-~l~~~l~~~l~d~-- 390 (1018)
.++.+.+ ...+ ..+...+.....+.....+--+++++..+..... ..+..+.. .++..+.......
T Consensus 89 l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 168 (268)
T PF08324_consen 89 LAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLD 168 (268)
T ss_dssp HHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-H
T ss_pred HHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhcccc
Q ss_pred -ChhHHHHHHHHHHHhHhhcCHHH--HHhhhhHHHHHHH-hccC-CChHHHHHHHHHHHHHH
Q 001749 391 -EQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILN-ALED-ESDEVKEKSYYALAAFC 447 (1018)
Q Consensus 391 -~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~-~l~~-~~~~v~~~a~~al~~l~ 447 (1018)
+..+|.++...+-.++......- .+.-..++..+.+ .... .++++..+++-|+|+++
T Consensus 169 ~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 169 SNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
No 426
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=23.28 E-value=5.1e+02 Score=22.64 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=40.6
Q ss_pred HHHHhccCC--ChHHHHHHHHHHHHHHhhhcc---ccccchHHHHHHHHHhhcCCC----HhHHHHHHHHHHHHHHHhhc
Q 001749 423 CILNALEDE--SDEVKEKSYYALAAFCEDMGE---EILPFLDPLMGKLLAALENSP----RNLQETCMSAIGSVAAAAEQ 493 (1018)
Q Consensus 423 ~l~~~l~~~--~~~v~~~a~~al~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~~----~~vr~~al~al~~l~~~~~~ 493 (1018)
.++..|..+ +..-.+.|......+++.-+. ++..|..+++..|+.+=++.+ ...|..|+-++ +-..+.
T Consensus 7 Dll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval---~v~~P~ 83 (114)
T PF10193_consen 7 DLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVAL---VVAAPE 83 (114)
T ss_dssp HHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHH---HHHSGG
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHH---HHHhhH
Confidence 344444422 344557788899999987654 888899999999988755432 24555555444 445555
Q ss_pred cchhhH
Q 001749 494 AFIPYA 499 (1018)
Q Consensus 494 ~~~~~~ 499 (1018)
...+|+
T Consensus 84 ~~~~~L 89 (114)
T PF10193_consen 84 KVAPYL 89 (114)
T ss_dssp GHHH-H
T ss_pred HHHHHH
Confidence 555554
No 427
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=23.26 E-value=6.4e+02 Score=23.83 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhcC
Q 001749 16 DNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (1018)
Q Consensus 16 d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~ 91 (1018)
|.+..++|.+.|.+.. |--....++++... .++.||++|.-.|++ ++++........|.++|.-|.
T Consensus 59 ~~~e~~e~~~lL~~W~--~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~--------~sd~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 59 DEQEVKQALELMPKWA--KIDIEDALELLSPYFTNPVVRKYAVSRLKL--------ASDEELLLYLLQLVQALKYEN 125 (166)
T ss_pred CHHHHHHHHHHHhcCC--CCCHHHHHHHcCccCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHhcc
Confidence 4444555555444322 22344455555432 467788887766654 356666677777777777664
No 428
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=22.97 E-value=4.8e+02 Score=22.27 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhcChH---HHHHhHHHHHHHHHhh--cCCCChhHHHHHHHHHHHhHhhcC
Q 001749 354 REAAVTAIGIISEGCAE---WMKEKLESVLHIVLGA--LRDPEQFVRGAASFALGQFAEYLQ 410 (1018)
Q Consensus 354 r~aal~~l~~l~~~~~~---~~~~~l~~l~~~l~~~--l~d~~~~Vr~~a~~~l~~l~~~~~ 410 (1018)
|...+..++.++..++. .+... . -+|.++.. +++.+|.+|+-|.+|+..+++...
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~-~-Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVREL-G-GIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc-C-ChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 45556777777776542 22221 1 15555544 357799999999999999998764
No 429
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=21.76 E-value=1.1e+03 Score=26.07 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=35.3
Q ss_pred hcCCChhHHHHHHHHHHHHh-hcChHHHHHhHHH-HHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001749 346 CQNASPKYREAAVTAIGIIS-EGCAEWMKEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (1018)
Q Consensus 346 l~~~~~~~r~aal~~l~~l~-~~~~~~~~~~l~~-l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 408 (1018)
.+-.++..-..+.++++.++ .++...-+..+++ +-+-++..-...+...|.-||.+...++..
T Consensus 273 ~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 273 CRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred cccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 33344444334445565554 4554333333332 223444444556888999999999988865
No 430
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=21.50 E-value=7.4e+02 Score=23.89 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=51.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhccc
Q 001749 121 PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (1018)
Q Consensus 121 ~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~ 191 (1018)
+.+..++.+++.-.|..|+.++...... ..+.+.++..+...+.| ++.-||.+..++|..+....
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d-~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHD-EEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhhC
Confidence 8889999999887777777666555433 34678888999888888 88889999999998887664
No 431
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=20.97 E-value=7.6e+02 Score=23.83 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=25.2
Q ss_pred HHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHhhc
Q 001749 37 VPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (1018)
Q Consensus 37 ~~~l~~~l~~~-~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e 90 (1018)
....++++... .++.||++|.-.|++ .+++........|.++|.-|
T Consensus 76 ~~~aL~LL~~~~~~~~Vr~yAV~~L~~--------~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 76 PEDALELLSPKFPDPFVRAYAVERLES--------ASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred HHHHHHHhCccCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHcc
Confidence 33444444432 356667666655543 25555666666666666655
No 432
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=20.51 E-value=1.4e+03 Score=26.69 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHH-HhHHHHHHHHHhhcCCCCh
Q 001749 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK-EKLESVLHIVLGALRDPEQ 392 (1018)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~l~~~l~~~l~d~~~ 392 (1018)
..+......+..+....+...++.+=.++-+.+-+++.-...-+...-.-++......+- .++..+. .+++.+-.+..
T Consensus 243 ~lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~-~Lik~lp~~~~ 321 (559)
T PF14868_consen 243 SLYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLA-HLIKSLPSSSY 321 (559)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-HHHHHcCCcch
Confidence 456666777777776677667777777776777778888888888776666665443433 3444444 34444432222
Q ss_pred hHHHHHHHHHHHhHhhcCHHH
Q 001749 393 FVRGAASFALGQFAEYLQPEI 413 (1018)
Q Consensus 393 ~Vr~~a~~~l~~l~~~~~~~~ 413 (1018)
. ...-...++++...+.++.
T Consensus 322 ~-~~~L~~LL~Rl~~~m~~~~ 341 (559)
T PF14868_consen 322 Q-LINLSILLRRLFFLMAPDH 341 (559)
T ss_pred h-HhhHHHHHHHHHHhcCHHH
Confidence 2 2234556777776665543
No 433
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=20.46 E-value=3.3e+02 Score=35.60 Aligned_cols=101 Identities=9% Similarity=0.105 Sum_probs=0.0
Q ss_pred cCCChhHHHHHHHHHHHHhhcCh-HHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhcCHHHH-HhhhhHHHH
Q 001749 347 QNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIV-SHYESVLPC 423 (1018)
Q Consensus 347 ~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~~ 423 (1018)
.+++...|...+.-++.+.-+.+ +.+..+++.+.+.+...|+ ++.+.||.+.+-++..+.-.+.+... .+++.++..
T Consensus 1497 rd~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~E 1576 (1749)
T KOG3613|consen 1497 RDQELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYE 1576 (1749)
T ss_pred chHHHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcCHhhcccchHHHHHH
Q ss_pred HHHhccCCChHHH--------------------HHHHHHHHHHH
Q 001749 424 ILNALEDESDEVK--------------------EKSYYALAAFC 447 (1018)
Q Consensus 424 l~~~l~~~~~~v~--------------------~~a~~al~~l~ 447 (1018)
++..+.......+ -.||+.|..++
T Consensus 1577 Lv~vf~q~eq~l~~~~~~~~s~~~~~qtw~~l~L~ACKlLDll~ 1620 (1749)
T KOG3613|consen 1577 LVQVFLQLEQDLQVGEANGQSTAYSSQTWLMLYLEACKLLDLLL 1620 (1749)
T ss_pred HHHHHHHHHhhhccccccccccccCchHHHHHHHHHHHHHHHHH
No 434
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=20.30 E-value=3.4e+02 Score=25.14 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHHHHHhH-hhHHHHHhcCCHHHHHHHHhhc
Q 001749 958 PELVNLFAEVVVSPEE--SSEVKSQVGMAFSHLISLYG-QQMQPLLSNLSPAHATALAAFA 1015 (1018)
Q Consensus 958 ~~il~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~ 1015 (1018)
++....+...|.++.. ++.++......+.....++. +.+..++.+|+.+++..|..++
T Consensus 50 g~~~~ALk~aL~npP~~~k~~~K~~~~~~Vl~vL~s~k~sdI~~~v~~L~~~~~D~LMKYi 110 (152)
T PF04699_consen 50 GDNEEALKAALENPPYGSKDAVKDRALQLVLEVLTSIKSSDIENAVKSLDSDQQDILMKYI 110 (152)
T ss_dssp T-HHHHHHHHTSS--TT-S-HHHHHHHHHHHHHHHCS-GGGHHHHHCCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHhccCCCcCCCcchHHHHHHHHHHHHHHccHHHHHHHHHhCCHHHHhHHHHHH
Confidence 4666777777776442 23667666666666666654 6799999999999999998765
No 435
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.05 E-value=1.2e+03 Score=26.63 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHH-----HHHHHHHHHHHHhhcCCHHH
Q 001749 21 RQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQL-----KQLVKQSLIESITLEHSAPV 95 (1018)
Q Consensus 21 ~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~-----~~~i~~~Ll~~l~~e~~~~v 95 (1018)
++.++.++-++++|+++..++.-+..+ ...-+++|-..... ...+.+. ...+.+.|+..|..+.+..+
T Consensus 7 ~k~~e~l~Fik~~~~~v~~llkHI~~~------~ImDlLLklIs~d~-~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~ 79 (475)
T PF04499_consen 7 RKTEEMLEFIKSQPNFVDNLLKHIDTP------AIMDLLLKLISTDK-PESPTGILEWLAEQNLIPRLIDLLSPSYSSDV 79 (475)
T ss_pred cCHHHHHHHHHhCccHHHHHHHhcCCc------HHHHHHHHHHccCc-ccchHHHHHHHHHhCHHHHHHHHhCCCCCHHH
Confidence 345566667777888888887766433 23344444332111 1111121 24567788888876678889
Q ss_pred HHHHHHHHHHHHcc
Q 001749 96 RRASANVVSIIAKY 109 (1018)
Q Consensus 96 r~~~~~~l~~i~~~ 109 (1018)
...++.++..|.+.
T Consensus 80 q~naa~~L~aII~i 93 (475)
T PF04499_consen 80 QSNAADFLKAIIRI 93 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
Done!