Query 001749
Match_columns 1018
No_of_seqs 357 out of 3022
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 16:28:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001749.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1046-1050//hhsearch_pdb/001749hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 646.1 77.4 810 2-1016 12-851 (852)
2 2bpt_A Importin beta-1 subunit 1.0 1 1 549.8 74.9 783 3-865 4-858 (861)
3 1qgr_A Protein (importin beta 1.0 1 1 540.3 71.0 786 4-867 2-874 (876)
4 1u6g_C TIP120 protein, CAND1; 1.0 1 1 486.3 67.5 923 3-990 6-1185(1230)
5 1wa5_C Importin alpha RE-expor 1.0 1 1 443.8 74.7 836 2-1017 4-959 (960)
6 2x19_B Importin-13; nuclear tr 1.0 1 1 411.6 62.8 762 2-909 23-896 (963)
7 2x1g_F Cadmus; transport prote 1.0 1 1 404.9 61.1 588 2-597 6-744 (971)
8 1qgr_A Protein (importin beta 1.0 1 1 383.2 69.0 759 40-911 6-875 (876)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 380.3 71.5 936 36-1013 7-1155(1230)
10 3m1i_C Exportin-1; heat repeat 1.0 1 1 376.6 70.7 766 2-908 15-930 (1049)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=646.10 Aligned_cols=810 Identities=18% Similarity=0.260 Sum_probs=665.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 68999999993199969999999999987359892999999981--2999669999999999842200035897889999
Q 001749 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (1018)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~--~~~~~~vR~~a~~~l~~~i~~~w~~l~~~~~~~i 79 (1018)
.+++.++|++++|||+++|++||++|++++++|++..+|.+++. ++.++.+|++|+++||+.+.++|..++++.+..|
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~i 91 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI 91 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999987394989999999999998709988999999985668898679999999999989874477999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-----C
Q ss_conf 99999997305998799999999999970207899851049999996028886799999999998256531034-----1
Q 001749 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-----R 154 (1018)
Q Consensus 80 ~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~-----~ 154 (1018)
|..+++.+. ++++.+|+.++.+++.|++.+++ +.||++++.+.+.++++++..|++++.+++.+++..++.+ .
T Consensus 92 k~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 92 KSECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHC
T ss_conf 999999874-99899999999999999986481-3568999999998709998999999999999999857875634313
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 01999999999731999998999999999998661048814699998327999999999863198889999999999975
Q 001749 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (1018)
Q Consensus 155 ~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~L~~l~ 234 (1018)
..++.+++.+.+++.+ ++..||..|++++..++...+ ..+...++.++..+...+.+++++++..++++|..++
T Consensus 170 ~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~-----~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRT-----QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp SCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTC-----HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 3299999999998567-978999999999999986463-----8799889999999998717997789999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-----------C
Q ss_conf 27850036759999999999730899996899999999999999828876615884989999953212-----------6
Q 001749 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLA-----------E 303 (1018)
Q Consensus 235 ~~~~~~~~~~~~~li~~l~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~-----------~ 303 (1018)
+..+..+.++++.+++.++....+ .++.+|..++++|..+++.....-.-.+++..+++.+++.|. +
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 857798998899999999987069--968999999999999860365798878889889999998757867679986698
Q ss_pred CCCCCCC----CCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 8988888----778579999999999998734111087998888530599956888999999999522948899869999
Q 001749 304 SNEAGED----DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESV 379 (1018)
Q Consensus 304 ~~~d~~d----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l 379 (1018)
.++|+++ ++|++|+++..+++.++...++.+++.+++.+.+.+++++|+.|+++++++|.+++++.+.+.++++.+
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~ 401 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL 401 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 44322245640111699999999999987461878999999999985599889999999999999863568899879999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 999986138997558999999999967320778-9976554899999832499858999899999998863001244436
Q 001749 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (1018)
Q Consensus 380 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 458 (1018)
++.+++.++|+++.||.++++++++++++.++. ...++..+++.+++.+.+++++||..++++++++++..++.+.||+
T Consensus 402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l 481 (852)
T 4fdd_A 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL 481 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999871799889999999999999988611047899999999999998589888999999999999997367667679
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999962189985999999999999999620062--1399999999999811582124568899998999998430
Q 001749 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (1018)
Q Consensus 459 ~~i~~~l~~~l~~~~~~vr~~al~ai~~l~~~~~~~~~--~~~~~i~~~l~~~l~~~~~~~~~~r~~~~~~l~~l~~~~g 536 (1018)
+.+++.+...++..+......++.+++.++...++.+. +|++.++|.+.+.+..
T Consensus 482 ~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~------------------------ 537 (852)
T 4fdd_A 482 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM------------------------ 537 (852)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------------------------
T ss_conf 99999999999883747999999999999997424313678999988999999873------------------------
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 31027872999999985259998247799999999999872047356212246999962568988766889994010026
Q 001749 537 RARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENING 616 (1018)
Q Consensus 537 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 616 (1018)
+.++++.++ .++.+++.++..+|..|.||++.+++.++..+.
T Consensus 538 ------------------l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~------------------- 579 (852)
T 4fdd_A 538 ------------------LKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQ------------------- 579 (852)
T ss_dssp ------------------SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-------------------
T ss_pred ------------------CCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_conf ------------------330469999-999999999999748679889999999999999-------------------
Q ss_pred CCCCCCCCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89988884001001466226661630018999999999999701057420899998740489926899999999999999
Q 001749 617 FGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIR 696 (1018)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~L~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 696 (1018)
.
T Consensus 580 -------------------------------------------------------------------------------~ 580 (852)
T 4fdd_A 580 -------------------------------------------------------------------------------K 580 (852)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
T ss_conf -------------------------------------------------------------------------------9
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 97118809999999999999999819864179899999999999951332118889998777677501399999987479
Q 001749 697 TMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLL 776 (1018)
Q Consensus 697 ~l~~e~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 776 (1018)
. +.....++...... + +.+..++..+.+++
T Consensus 581 ~-------------------------------------------l~~~~~~~~~~~~~---~----~~d~~~~~~~l~~l 610 (852)
T 4fdd_A 581 T-------------------------------------------LAQAMLNNAQPDQY---E----APDKDFMIVALDLL 610 (852)
T ss_dssp H-------------------------------------------HHHHHHHHHCTTTS---C----CCCTHHHHHHHHHH
T ss_pred H-------------------------------------------HHHHHHHHCCCCCC---C----CCCCHHHHHHHHHH
T ss_conf 9-------------------------------------------99998753388666---8----87611999999999
Q ss_pred HHHHHHHCCCHHHHH--HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 999999399829989--997999998552699922214456969999862194157509746999998418999677878
Q 001749 777 PAFAKSMGPHFAPIF--AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRN 854 (1018)
Q Consensus 777 ~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~ 854 (1018)
+.+++.+|+.+.+++ ..+++.++..+.+..+ .+|..++.++++++.++|..+.+|++.++|.+.+.+.++++++|.+
T Consensus 611 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~ 689 (852)
T 4fdd_A 611 SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP-EVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN 689 (852)
T ss_dssp HHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 789998747699883677189999998389984-4999999999999998168889879999999998769420689999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHCCCCCCH
Q ss_conf 99999998751482204689999986541007999991267679999999987489999-9-441899997118999847
Q 001749 855 AAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLKVLPLKEDF 932 (1018)
Q Consensus 855 a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~-~-~~~~l~~~l~~lp~~~d~ 932 (1018)
|++++|.++.+.++.+.||+..+++.|.+++..++....+++|++.++||++..+|+.+ | ++++++.|++.||..+|.
T Consensus 690 a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~ 769 (852)
T 4fdd_A 690 ATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDN 769 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99999999997117678789999999999857998872077889999999998688976755899999999986536660
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHH
Q ss_conf 7319999999999820682451004599999998725999884789999999999998727-619999842899999999
Q 001749 933 EESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYG-QQMQPLLSNLSPAHATAL 1011 (1018)
Q Consensus 933 ~e~~~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~l 1011 (1018)
+|+..++++||.++..+++.+.+.+..++..++.+-. ..++.++.+..++..+++..| +.|+++++++|++.|.+|
T Consensus 770 ~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 846 (852)
T 4fdd_A 770 EEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN---PKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERL 846 (852)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSS---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHH
T ss_conf 7999999999999986918688889999999870689---9789999999999999876772019999872999999999
Q ss_pred HHHCC
Q ss_conf 86268
Q 001749 1012 AAFAP 1016 (1018)
Q Consensus 1012 ~~~~~ 1016 (1018)
++.|+
T Consensus 847 ~~~~~ 851 (852)
T 4fdd_A 847 AAFYG 851 (852)
T ss_dssp HHTSC
T ss_pred HHHHC
T ss_conf 98709
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=549.81 Aligned_cols=783 Identities=17% Similarity=0.261 Sum_probs=650.0
Q ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH-----------
Q ss_conf 8999999993-199969999999999987359--89299999998129-99669999999999842200-----------
Q 001749 3 QSLELLLIQF-LMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGH----------- 67 (1018)
Q Consensus 3 ~~l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~-~~~~vR~~a~~~l~~~i~~~----------- 67 (1018)
+++.++|.++ +|||++.|++|+++|+++.++ |+++..|++++.++ .++.+|++|+++||+.+.++
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 79999999742693979999999999999851999999999999837899867999999998702257574878999976
Q ss_pred HCC-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Q ss_conf 035-897889999999999973059987999999999999702078998510499999960288-867999999999982
Q 001749 68 WAK-LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSL 145 (1018)
Q Consensus 68 w~~-l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~-~~~~r~~al~~l~~l 145 (1018)
|.. ++++.+..||+.+++.+.+ ++..+|+.++.+++.|++.++|.+.||++++.+.+.++++ ++..|++++.+++.+
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 76629999999999999998779-96379999999999999846764554999999999872689789999999999999
Q ss_pred HHHHHCC---CCCCHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 5653103---41019999999997319999--989999999999986610488146999983279999999998631988
Q 001749 146 TETIGQT---FRPHFADMQALLLKCLQDET--SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220 (1018)
Q Consensus 146 ~~~~~~~---~~~~~~~l~~~l~~~l~d~~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 220 (1018)
++..+.. +.++.+.+++.+..++.+ + +..||..++++++.++.+......... ..+.+++.+...+.++++
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~vr~~al~~l~~~~~~~~~~~~~~~---~~~~ll~~l~~~~~~~~~ 238 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQS-TETSKAVRLAALNALADSLIFIKNNMEREG---ERNYLMQVVCEATQAEDI 238 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHGGGCHHHHTSHH---HHHHHHHHHHHHHTCSCH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHCCCCH
T ss_conf 9727843567898899999999984157-999878999999999999999998706766---899999999998659988
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----------H--
Q ss_conf 89999999999975278500367599-999999997308999968999999999999998288766-----------1--
Q 001749 221 DVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLK-----------K-- 286 (1018)
Q Consensus 221 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~li~~l~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~-----------~-- 286 (1018)
+++..+++++..+++..+..+.+++. .+++.++....+ .++.+|..++++|..+++....... .
T Consensus 239 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 239 EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS--PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999999999999999988999998899999999998737--727899999999999998788643332103577325699
Q ss_pred --CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf --588498999995321268988888778579999999999998734111087998888530599956888999999999
Q 001749 287 --HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGII 364 (1018)
Q Consensus 287 --~~~~~~il~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~i 364 (1018)
.+++..+++.++..|.+.++|+++++|++|.++..+++.++..+++.+++.+++.+.+.+.+++|+.|++++.+++.+
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i 396 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSI 396 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999988999999998706653012468689999999999998740868999999999875799726999999999999
Q ss_pred HHCCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 52294-88998699999999861389975589999999999673207789--9765548999998324998589998999
Q 001749 365 SEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYY 441 (1018)
Q Consensus 365 ~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~il~~l~~~l~~~~~~v~~~a~~ 441 (1018)
++++. +.+.++++.+++.+++.+.|+++.||.++++++++++..+++.+ .++++.+++.+++.+.++ ++|+..+++
T Consensus 397 ~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~ 475 (861)
T 2bpt_A 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSW 475 (861)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_conf 8599878889989999999998828995999999999999999873540487888999999999976447-289999999
Q ss_pred HHHHHHHHHC----CCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--
Q ss_conf 9999886300----124443698999999962189--98599999999999999962006213999999999998115--
Q 001749 442 ALAAFCEDMG----EEILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT-- 513 (1018)
Q Consensus 442 al~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~--~~~vr~~al~ai~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-- 513 (1018)
++..+++.++ ..+.||++.+++.+...+.+. +..+|..++.+++.++...+..+.+|+..++|.+...+...
T Consensus 476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 555 (861)
T 2bpt_A 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMS 555 (861)
T ss_dssp HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986231354246899999999999998575861589999999999999976265699999999999999998875
Q ss_pred ------C----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ------8----2124568899998999998430310278729999999852599982-4779999999999987204735
Q 001749 514 ------N----DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFS-ELREYTHGFFSNIAGVLEDGFA 582 (1018)
Q Consensus 514 ------~----~~~~~~r~~~~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~ 582 (1018)
+ +....++..++++++.++..+|. .+.||.+.+++.++..++..+. .+|+.++.+++.++...|.+|.
T Consensus 556 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~ 634 (861)
T 2bpt_A 556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE 634 (861)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3201388556777999999999999999998556-347899999999999974678875799999999999999766099
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 62122469999625689887668899940100268998888400100146622666163001899999999999970105
Q 001749 583 QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS 662 (1018)
Q Consensus 583 ~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~L~~~~~~~~~~ 662 (1018)
||++.++|.++..++.+. ...+..++.+++.++...+..
T Consensus 635 ~~l~~i~~~l~~~l~~~~-----------------------------------------~~vr~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 635 KYLETFSPYLLKALNQVD-----------------------------------------SPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp HHHHHHHHHHHHHHHCTT-----------------------------------------SHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHCCCC-----------------------------------------HHHHHHHHHHHHHHHHHHCHH
T ss_conf 999999999998865566-----------------------------------------789999999999999874540
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 742089999874048992689999999999999997118-8099999999999999998198641798999999999999
Q 001749 663 YAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTED-DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLL 741 (1018)
Q Consensus 663 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e-~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l 741 (1018)
+.||++. +++.+.+.+.++ .+++++..++.+++.+....|.. +.+|++.+++.+...+
T Consensus 674 ~~~~~~~--------------------l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~-~~~~l~~~l~~l~~~~ 732 (861)
T 2bpt_A 674 FRRYSDA--------------------MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-FIPYLNDIMALCVAAQ 732 (861)
T ss_dssp GHHHHHH--------------------HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHHH
T ss_pred CCCHHHH--------------------HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 3111999--------------------999999972786556766599999999999984050-8999999999999997
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHCCCC---CCCCHHHHH
Q ss_conf 5133211888999877767750139999998747999999939---9829989997999998552699---922214456
Q 001749 742 REESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMG---PHFAPIFAKLFDPLMKFAKSSR---PLQDRTMVV 815 (1018)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~---~~~~r~~a~ 815 (1018)
.... + . ++++..+....++..+.+.+..++..+| ..+.+|+..+++.+.+.+.+.+ ...+|..|+
T Consensus 733 ~~~~------~-~--~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~ 803 (861)
T 2bpt_A 733 NTKP------E-N--GTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAV 803 (861)
T ss_dssp TCCC------S-S--SSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHH
T ss_pred HCCC------C-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 3678------9-9--97588999999999999999999999826778899999999999999874855578699999999
Q ss_pred HHHHHHHHHC-CCCHHHHHH-HHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHH
Q ss_conf 9699998621-941575097-46999998418---99967787899999998751
Q 001749 816 ATLAEVARDM-GSPIAAYVD-RVMPLVLKELA---SPDAMNRRNAAFCVGELCKN 865 (1018)
Q Consensus 816 ~~l~~~~~~~-~~~~~~~~~-~l~~~l~~~l~---~~~~~vr~~a~~~lg~l~~~ 865 (1018)
.+++.++... |..+.+|++ .+++.+++.+. +.+..++.+|.|+++.+.+.
T Consensus 804 ~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 804 GLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999882882488987267999999988535578877899999999999987
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=540.28 Aligned_cols=786 Identities=17% Similarity=0.233 Sum_probs=643.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHH-----------HHHHC
Q ss_conf 999999993199969999999999987359--89299999998129-99669999999999842-----------20003
Q 001749 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKI-----------TGHWA 69 (1018)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~-~~~~vR~~a~~~l~~~i-----------~~~w~ 69 (1018)
++.++|++++|||+++|++|++.|+++.++ |+++..|++++.++ .++.+|+.|+++||+.+ .++|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 68999997629898999999999999871680469999999985789987999999999987605543476789986440
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 5897889999999999973059987999999999999702078998510499999960288--86799999999998256
Q 001749 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTE 147 (1018)
Q Consensus 70 ~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~--~~~~r~~al~~l~~l~~ 147 (1018)
.++++.+..||..+++.+.+ ++..+ +.++.+++.+++..++...||++++.+.+.+.++ ++..|+.++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCC-CCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 69999999999999998679-94788-99999999999846762256889999999870889879999999999999987
Q ss_pred HH-HCCCCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 53-10341019999999997319999-98999999999998661048814699998327999999999863198889999
Q 001749 148 TI-GQTFRPHFADMQALLLKCLQDET-SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (1018)
Q Consensus 148 ~~-~~~~~~~~~~l~~~l~~~l~d~~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 225 (1018)
.. ++.+..+.+.+++.+..++.++. +..+|..++++++.++.+.+.......+ .+.+++.+...+.+.+++++..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~---~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE---RHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHH---HHHHHHHHHHHTTCSSHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCCHHHHHH
T ss_conf 4587667867999999999861679998899999999999999999998871789---9999999998717998899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-------H-------HH-CC-
Q ss_conf 999999975278500367599-9999999973089999689999999999999982887-------6-------61-58-
Q 001749 226 AFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-------L-------KK-HK- 288 (1018)
Q Consensus 226 a~~~L~~l~~~~~~~~~~~~~-~li~~l~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~-------~-------~~-~~- 288 (1018)
+++++..+++..++.+.+++. .+++.++....+ .++.+|..++++|..+++..... . .. ..
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 9999999999869999988778999999999638--73499999999999998878767665100112477754201899
Q ss_pred ---CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf ---84989999953212689888887785799999999999987341110879988885305999568889999999995
Q 001749 289 ---LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (1018)
Q Consensus 289 ---~~~~il~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~i~ 365 (1018)
.+..+++.++..+...++|+++++|.+|.++..+++.++..+++.+++.+++.+...+.+++|+.|++++.+++.++
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99989887079998753133444545217999999999999987758669999999998846998289999999999997
Q ss_pred HCCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 2294-88998699999999861389975589999999999673207789--97655489999983249985899989999
Q 001749 366 EGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYYA 442 (1018)
Q Consensus 366 ~~~~-~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~~il~~l~~~l~~~~~~v~~~a~~a 442 (1018)
+++. +.+.++++.+++.++..++|+++.||.+|++++++++..+++.. .++++.+++.++..+.++ ++|+..++++
T Consensus 395 ~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~a 473 (876)
T 1qgr_A 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWA 473 (876)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_conf 488777899999999999999867997899999999999999857201144777999999999987588-8899999999
Q ss_pred HHHHHHHHC--------------CCCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999886300--------------124443698999999962189---985999999999999999620062139999999
Q 001749 443 LAAFCEDMG--------------EEILPFLDPLMGKLLAALENS---PRNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (1018)
Q Consensus 443 l~~l~~~~~--------------~~~~~~~~~i~~~l~~~l~~~---~~~vr~~al~ai~~l~~~~~~~~~~~~~~i~~~ 505 (1018)
+..+++.++ +.+.||++.+++.+...+... +..+|..++.+++.++...+..+.+|+..+++.
T Consensus 474 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 553 (876)
T 1qgr_A 474 FSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLV 553 (876)
T ss_dssp HHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999985020123444455540321576999999999997276742046999999999999997743118999999999
Q ss_pred HHHHHHCC--------CCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q ss_conf 99998115--------8212----456889999899999843031027872999999985259998--247799999999
Q 001749 506 LKIFMVLT--------NDED----LRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF--SELREYTHGFFS 571 (1018)
Q Consensus 506 l~~~l~~~--------~~~~----~~~r~~~~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~~~~~l~ 571 (1018)
+...+... ++.+ ..++..++.+++.++..+|.+.+.||++.+++.++..++... ..+++.++.+++
T Consensus 554 l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~ 633 (876)
T 1qgr_A 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS 633 (876)
T ss_dssp HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99999999988712488635999999999999999999998285420578999999999999853688885089999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99987204735621224699996256898876688999401002689988884001001466226661630018999999
Q 001749 572 NIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQA 651 (1018)
Q Consensus 572 ~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~ 651 (1018)
.++...|..|.||++.++|.+...+.... ....|..|+.+
T Consensus 634 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~----------------------------------------~~~vr~~a~~~ 673 (876)
T 1qgr_A 634 TLVEVLGGEFLKYMEAFKPFLGIGLKNYA----------------------------------------EYQVCLAAVGL 673 (876)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHCT----------------------------------------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------------HHHHHHHHHHH
T ss_conf 99999876099999999999999875865----------------------------------------08799999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 9999997010574208999987404899268999999999999999711-880999999999999999981986417989
Q 001749 652 LGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTE-DDDKDVVAQACTSIVEIINDYGYMAVEPYM 730 (1018)
Q Consensus 652 L~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-e~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 730 (1018)
++.++...+..+.||++. +++.+.+.+.. +.+.+++..++.+++.+....|.. +.+++
T Consensus 674 l~~l~~~~~~~~~~~~~~--------------------i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-~~~~l 732 (876)
T 1qgr_A 674 VGDLCRALQSNIIPFCDE--------------------VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE-FKKYL 732 (876)
T ss_dssp HHHHHHHHGGGGHHHHHH--------------------HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-GGGGH
T ss_pred HHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHH-HHHHH
T ss_conf 999999887854645999--------------------999999974871233876399999999999970352-79999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHH
Q ss_conf 9999999999951332118889998777677501399999987479999999399----------829989997999998
Q 001749 731 SRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP----------HFAPIFAKLFDPLMK 800 (1018)
Q Consensus 731 ~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~----------~~~~~~~~l~~~l~~ 800 (1018)
+.+++.+.+.+..+ .+. ++++..++...++..+.+.+..+++.+|. .+.+|++.+++.+..
T Consensus 733 ~~~~~~l~~~~~~~-------~~~--~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 803 (876)
T 1qgr_A 733 EVVLNTLQQASQAQ-------VDK--SDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDH 803 (876)
T ss_dssp HHHHHHHHHHHTCC-------CCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-------CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998555-------899--975889999999999999999999997457555554388999999999999999
Q ss_pred HHCCCC-CCCCHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 552699-922214456969999862194-15750-9746999998-4189996778789999999875148
Q 001749 801 FAKSSR-PLQDRTMVVATLAEVARDMGS-PIAAY-VDRVMPLVLK-ELASPDAMNRRNAAFCVGELCKNGG 867 (1018)
Q Consensus 801 ~l~~~~-~~~~r~~a~~~l~~~~~~~~~-~~~~~-~~~l~~~l~~-~l~~~~~~vr~~a~~~lg~l~~~~~ 867 (1018)
...+.. ...+|..|++++++++.+.|. .+.+| .+.+++.+++ ++.++++.+|++|+|++|.+++..+
T Consensus 804 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 804 IAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 86588888899999999999999882848899997048999999987546887689999999999997534
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=486.25 Aligned_cols=923 Identities=14% Similarity=0.153 Sum_probs=564.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC----------CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89999999931999699999999999873598----------92999999981299966999999999984220003589
Q 001749 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDP----------QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLS 72 (1018)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p----------~~~~~l~~il~~~~~~~vR~~a~~~l~~~i~~~w~~l~ 72 (1018)
.++.++|+.+.|||+++|++|++.|.+..+.+ .++..+++.+. ++++.+|+.|+..+..... .++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~----~~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS----KVK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT----TSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH----HCC
T ss_conf 69999997558987859999999999997416657875679999999999866-9998999999999999997----587
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC--------CCCCHHHHHHHHHC-CCCHHHHHHHHHHHH
Q ss_conf 788999999999997305998799999999999970207899--------85104999999602-888679999999999
Q 001749 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG--------EWPDLLPFLFQFSQ-SEQEEHREVALILFS 143 (1018)
Q Consensus 73 ~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~--------~w~~ll~~l~~~~~-s~~~~~r~~al~~l~ 143 (1018)
++....+++.++..+.+ ++..+|..++.+++.++....+.. .|++++|.+...+. ++++..|..++.++.
T Consensus 81 ~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98999999999998669-83889999999999999967974444411788999999999998757884679999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 82565310341019999999997319999989999999999986610488146999983279999999998631988899
Q 001749 144 SLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVA 223 (1018)
Q Consensus 144 ~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 223 (1018)
.+++..++.+.++.+.+++.+...+.+ ++..||..|+.+++.++...++. .+..+++.+++.+.. ..+...+
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~~----~~~~~l~~l~~~L~~---~~~~~~r 231 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSK---NDSMSTT 231 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHH---TCSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHCC---CCCHHHH
T ss_conf 999982767788799999999998759-96899999999999999856899----999999999998616---7755689
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 99999999975278500367599999999997308999968999999999999998288766158849899999532126
Q 001749 224 VIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE 303 (1018)
Q Consensus 224 ~~a~~~L~~l~~~~~~~~~~~~~~li~~l~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 303 (1018)
..+++++..++...+..+.++++.+++.++..+.++ ++++|..++.++..+++..+..+.. +++.+++.++..+..
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~--~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRCPKEVYP--HVSTIINICLKYLTY 307 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCTTCCCHH--HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCHHHHHH--HHHHHHHHHHHHHCC
T ss_conf 999999999999868989988999999999986689--7789999999999999978487777--689999999998278
Q ss_pred C--------------------CCCC----------CCCCCCHHHHHHHHHHHHHHHCCH---HCHHHHHHHHHHHHCCCC
Q ss_conf 8--------------------9888----------887785799999999999987341---110879988885305999
Q 001749 304 S--------------------NEAG----------EDDDLAPDRAAAEVIDTMALNLAK---HVFPPVFEFASVSCQNAS 350 (1018)
Q Consensus 304 ~--------------------~~d~----------~d~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~l~~~l~~~~ 350 (1018)
. ++++ ++..|.+|.++..+++.++...++ ..++.+++.+...+.+.+
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99888764411011223344653011001366645556779999999999999974666799999999899998717986
Q ss_pred HHHHHHHHHHHHHHHH-------------------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 5688899999999952-------------------294889986999999998613899755899999999996732077
Q 001749 351 PKYREAAVTAIGIISE-------------------GCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (1018)
Q Consensus 351 ~~~r~aal~~l~~i~~-------------------~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 411 (1018)
+.+|.+++.+++.+.. ++...+..+++.+++.+.+.++|+++.+|.+++.+++.++..++.
T Consensus 388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~ 467 (1230)
T 1u6g_C 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 57999999999999997242434346752013564559999987469999999986137787999999999999997611
Q ss_pred HHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 8997655489999983249985--8999899999998863001-244436989999999621899859999999999999
Q 001749 412 EIVSHYESVLPCILNALEDESD--EVKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (1018)
Q Consensus 412 ~~~~~~~~il~~l~~~l~~~~~--~v~~~a~~al~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~vr~~al~ai~~l~ 488 (1018)
.+.++++.+++.++..+.++.+ .++..++.++..+++..+. .+.||++.+++.+...+++.+..++..++.+++.++
T Consensus 468 ~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 05777999999999997487885168999999999999838988788679999999999971424689999999999999
Q ss_pred HHHHC-------CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC------
Q ss_conf 99620-------06213999999999998115821245688999989999984303102787299999998525------
Q 001749 489 AAAEQ-------AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF------ 555 (1018)
Q Consensus 489 ~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~~~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l------ 555 (1018)
...+. .+.||++.++|.+...+... +.+..+|..++.+++.++...|. .+.++++.+++.+...+
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~g~-~~~~~~~~~l~~L~~~l~~e~~r 625 (1230)
T 1u6g_C 548 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNLGD-NLGSDLPNTLQIFLERLKNEITR 625 (1230)
T ss_dssp HHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHTGG-GCCTHHHHHHHHHHHHTTSSSHH
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 87167555653232789999999999987326-99889999999999999998270-32443889999999884453059
Q ss_pred ----------------------------------CCCCHHHHHHHHHHHHHHHHHCC-----------------------
Q ss_conf ----------------------------------99982477999999999998720-----------------------
Q 001749 556 ----------------------------------GLEFSELREYTHGFFSNIAGVLE----------------------- 578 (1018)
Q Consensus 556 ----------------------------------~~~~~~~~~~~~~~l~~l~~~~~----------------------- 578 (1018)
..++..+|..++.+++.++...+
T Consensus 626 ~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D 705 (1230)
T 1u6g_C 626 LTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESD 705 (1230)
T ss_dssp HHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999998185644368889999999999998678889999999999999604333898999999999876357541
Q ss_pred -------------------CCCCCCHHHHHHHHHHHCCCCC--CCC-----------CCCCC--CCHHH-CCCC-CCCCC
Q ss_conf -------------------4735621224699996256898--876-----------68899--94010-0268-99888
Q 001749 579 -------------------DGFAQYLPLVVPLAFSSCNLDD--GSA-----------VDIDG--SDDEN-INGF-GGVSS 622 (1018)
Q Consensus 579 -------------------~~~~~~l~~i~~~ll~~~~~~~--~~~-----------~~~~~--~~~~~-~~~~-~~~~~ 622 (1018)
..+.++.+.++|.++..+.... +.. ..... ...+. .... ..+..
T Consensus 706 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~ 785 (1230)
T 1u6g_C 706 MHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS 785 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTT
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf 87899999999999884912677767768999999975862105789999999999983478878899999998500357
Q ss_pred CCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCC--------------------------------------
Q ss_conf 840010014662266616300189999999999997010574--------------------------------------
Q 001749 623 DDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA-------------------------------------- 664 (1018)
Q Consensus 623 ~~~~~~~~~~~~~~i~t~~~~~k~~a~~~L~~~~~~~~~~~~-------------------------------------- 664 (1018)
.+.. ......+..+.++++.++...+....
T Consensus 786 ~~~~------------~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~ 853 (1230)
T 1u6g_C 786 QSTA------------LTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG 853 (1230)
T ss_dssp C----------------CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCC------------CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8873------------2000104899999999998465666899999999837887667999999999998615678765
Q ss_pred -C-HHHHHHHHHHCCCCHH---H--------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf -2-0899998740489926---8--------9999999999999997118809999999999999999819864179899
Q 001749 665 -P-FLEESLKILSHNEGPA---K--------AREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMS 731 (1018)
Q Consensus 665 -p-~~~~~~~~l~~~~~~~---~--------~~~~~~~~~~~l~~~l~~e~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 731 (1018)
| ..+.+.+.+... ... . ....+...+|.+++.+..+ ++.+...+.++.+++...+...+.++..
T Consensus 854 ~~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~~~~~~ 930 (1230)
T 1u6g_C 854 QLELKSVILEAFSSP-SEEVKSAASYALGSISVGNLPEYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKPYVE 930 (1230)
T ss_dssp CTHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTTHHHHH
T ss_pred CCCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 641899999984799-7789999999968775269998899999987266--0324988999999982387666776699
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 99999999995133211888999877767750139999998747999999939982998999799999855269992221
Q 001749 732 RLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDR 811 (1018)
Q Consensus 732 ~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r 811 (1018)
.+++.+ .... .+.++.+...++++++.++.... ..++|.+.+.+.++++ ..|
T Consensus 931 ~i~~~L----~~~~----------------~~~~~~~r~~~a~~lg~l~~~~~-------~~l~p~l~~~l~~~~~-~~R 982 (1230)
T 1u6g_C 931 NIWALL----LKHC----------------ECAEEGTRNVVAECLGKLTLIDP-------ETLLPRLKGYLISGSS-YAR 982 (1230)
T ss_dssp HHHHHH----TTCC----------------CCSSTTHHHHHHHHHHHHHHSSG-------GGTHHHHTTTSSSSCH-HHH
T ss_pred HHHHHH----HHHH----------------CCCCHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHCCCCH-HHH
T ss_conf 999999----9873----------------38304468999988756650676-------8888999998569978-899
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC--
Q ss_conf 445696999986219415750974699999841899967787899999998751482204689999986541007999--
Q 001749 812 TMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSE-- 889 (1018)
Q Consensus 812 ~~a~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~-- 889 (1018)
..++..+..++...+....+|++.+++.++++++|++.+||++|+++++.++.+.++.+.++++++++.|......+.
T Consensus 983 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~ 1062 (1230)
T 1u6g_C 983 SSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKEL 1062 (1230)
T ss_dssp HHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGG
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999997068233589899989999986489858799999999999984285768977988989999883026876
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf --------------991267679999999987489999944189999711899984773199999999998206824510
Q 001749 890 --------------PDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILS 955 (1018)
Q Consensus 890 --------------~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~ 955 (1018)
+.-.+|+||..|+++++.++.+.+++.++++.|++.||. |.+.+..++..+..|+..+++.+.+
T Consensus 1063 ~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d--~~di~~~~~~~l~~l~~~~~~~~~~ 1140 (1230)
T 1u6g_C 1063 IREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD--HYDIKMLTFLMLVRLSTLCPSAVLQ 1140 (1230)
T ss_dssp EEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHSCCHHHHT
T ss_pred HEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 01330589602367748999999999999999888747899999999804676--6889999999999998408798999
Q ss_pred HHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHHHHH
Q ss_conf 045999999987259998----------84789999999999998
Q 001749 956 LVPELVNLFAEVVVSPEE----------SSEVKSQVGMAFSHLIS 990 (1018)
Q Consensus 956 ~~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~ 990 (1018)
++++++..+...+..+.. .++..+.+.+++..+..
T Consensus 1141 ~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~ 1185 (1230)
T 1u6g_C 1141 RLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLT 1185 (1230)
T ss_dssp TTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999841146343652488999999999999999980
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=443.76 Aligned_cols=836 Identities=13% Similarity=0.150 Sum_probs=564.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHC------CCCHH
Q ss_conf 6899999999319996999999999998735989299999998129-9966999999999984220003------58978
Q 001749 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWA------KLSPQ 74 (1018)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vR~~a~~~l~~~i~~~w~------~l~~~ 74 (1018)
.+++.++|.+++|||++.| ||++|++++++|+|+..|++++.+. .+..+|++|+++|||.+.++|. .++++
T Consensus 4 ~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~ 81 (960)
T 1wa5_C 4 LETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPAN 81 (960)
T ss_dssp HHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHH
T ss_pred HHHHHHHHHHHCCCCHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 9999999997659987899--99999985559988999999986579888899999999999998548876567889989
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 899999999999730599879999999999997020789985104999999602888679999999999825653103--
Q 001749 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-- 152 (1018)
Q Consensus 75 ~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-- 152 (1018)
.+..||+.+++.+..+ +..+|++++.+++.|++.++| +.||++++.+.+.+++++...+++++.++..+++.....
T Consensus 82 ~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 82 NVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999808-799999999999999986171-30157999999984789889999999999999999887614
Q ss_pred -----------CCCCHHHHHHHHH---HHCCCCCC--H------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -----------4101999999999---73199999--8------999999999998661048814699998327999999
Q 001749 153 -----------FRPHFADMQALLL---KCLQDETS--N------RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNV 210 (1018)
Q Consensus 153 -----------~~~~~~~l~~~l~---~~l~d~~~--~------~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~ 210 (1018)
+..+.+.+++++. .++.++.+ . .++..+++++..+....-.......+..+++.+.+.
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 84778999999999899999999999999873579879999999999999999999862565599999899999999999
Q ss_pred HHHHHH--CCC---------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHH
Q ss_conf 999863--198---------88999999999997527850036759999999999730---8999968999999999999
Q 001749 211 SRQCLA--SGE---------EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS---SHNLEPNTRHQAIQIISWL 276 (1018)
Q Consensus 211 l~~~l~--~~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~li~~l~~~~~---~~~~~~~vr~~a~~~l~~~ 276 (1018)
+..... ..+ +.++..+++++..+.+..++.|.++++.+++.+++.+. +...++.++..+++||.++
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 76899855578553313279999999999999999998999999999999999999984377767289999999999999
Q ss_pred HHHHHHH--HHHCCCHHHHH-HHHHHHHCCCCCC----------------CCCCCCCHHHHHHHHHHHHHHHCCHHCHHH
Q ss_conf 9982887--66158849899-9995321268988----------------888778579999999999998734111087
Q 001749 277 AKYKYNS--LKKHKLVIPIL-QVMCPLLAESNEA----------------GEDDDLAPDRAAAEVIDTMALNLAKHVFPP 337 (1018)
Q Consensus 277 ~~~~~~~--~~~~~~~~~il-~~l~~~l~~~~~d----------------~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~ 337 (1018)
++..... ++..+++..++ ..+++.|.-.++| ++++.+++|++|..+++.++..+++.+++.
T Consensus 320 ~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~ 399 (960)
T 1wa5_C 320 TRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNI 399 (960)
T ss_dssp HTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 68676899876851899999999687348888789988449999998635755123718899999999999701327899
Q ss_pred HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHCC---HHHHHH-----HHHHH-HHHHHHHCCCC---CHHHHHHHH
Q ss_conf 9988885305------999568889999999995229---488998-----69999-99998613899---755899999
Q 001749 338 VFEFASVSCQ------NASPKYREAAVTAIGIISEGC---AEWMKE-----KLESV-LHIVLGALRDP---EQFVRGAAS 399 (1018)
Q Consensus 338 ~~~~l~~~l~------~~~~~~r~aal~~l~~i~~~~---~~~~~~-----~l~~l-~~~l~~~l~d~---~~~Vr~~a~ 399 (1018)
+++++.+.+. +.+|+.|++|++++|.++++. ...... .+..+ ...+++.+.|+ ++.||.+|+
T Consensus 400 ~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~ 479 (960)
T 1wa5_C 400 FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAI 479 (960)
T ss_dssp HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHH
T ss_conf 99999999987366961217999999999999998741256774123443569999999737874499888833039899
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-----------CCCCCCCHHHHHHHHHHH
Q ss_conf 999996732077899765548999998324998589998999999988630-----------012444369899999996
Q 001749 400 FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-----------GEEILPFLDPLMGKLLAA 468 (1018)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~~-----------~~~~~~~~~~i~~~l~~~ 468 (1018)
|++|++++++.+ +++..+++.+++.+.+++.+|+..||.|+..|++.. ++.+.||++.+++.|+.+
T Consensus 480 ~~lg~~~~~~~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~l 556 (960)
T 1wa5_C 480 KYIYTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556 (960)
T ss_dssp HHHHHTGGGSCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999998865899---99999999999984899721999999999999844364446654435987564699999999999
Q ss_pred HCCCC-----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 21899-----8599999999999999962006213999999999998115--8212456889999899999843031027
Q 001749 469 LENSP-----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--NDEDLRSRARATELLGLVAESVGRARME 541 (1018)
Q Consensus 469 l~~~~-----~~vr~~al~ai~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~r~~~~~~l~~l~~~~g~~~~~ 541 (1018)
++... ....+.++.+++.++...++.+.||++.+++.+...+... +.++...+..++++++.++++.+++.+.
T Consensus 557 l~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 636 (960)
T 1wa5_C 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP 636 (960)
T ss_dssp HHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 97146787764322799999999999888861247999999999999999739897278899999999999638953699
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH--HHCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 8729999999852599982477999999999998720473562122469999--62568988766889994010026899
Q 001749 542 PILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAF--SSCNLDDGSAVDIDGSDDENINGFGG 619 (1018)
Q Consensus 542 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1018)
++.+.+++.+...++.+..++.++++..++.+.... ..|.+|+..++|.++ ...+..
T Consensus 637 ~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~-------------------- 695 (960)
T 1wa5_C 637 LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELK-------------------- 695 (960)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCCHHHHCCC--------------------
T ss_conf 999999999999998605766999999999999735-47889999999998099985577--------------------
Q ss_pred CCCCCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88884001001466226661630018999999999999701057420899998740489926899999999999999971
Q 001749 620 VSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMT 699 (1018)
Q Consensus 620 ~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~L~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 699 (1018)
+ .-...+.+|..++...+..+.. ++. ++..+...+.
T Consensus 696 --------------------~---~~~~~~~~L~~~~~~~~~~~~~-~~~--------------------~l~~~~~~~~ 731 (960)
T 1wa5_C 696 --------------------G---NIPAVTRLLKSFIKTDSSIFPD-LVP--------------------VLGIFQRLIA 731 (960)
T ss_dssp --------------------T---THHHHHHHHHHHHHHHGGGCSC-SHH--------------------HHHHHHHHHT
T ss_pred --------------------C---CCHHHHHHHHHHHHHCHHHHHH-HHH--------------------HHHHHHHHHC
T ss_conf --------------------8---7355899999999768499999-999--------------------9999999967
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 18809999999999999999819864179899999999999951332118889998777677501399999987479999
Q 001749 700 EDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAF 779 (1018)
Q Consensus 700 ~e~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l 779 (1018)
++..+ ..++..+ +.+
T Consensus 732 -~~~~~--~~a~~ll--------------------------------------------------------------~~i 746 (960)
T 1wa5_C 732 -SKAYE--VHGFDLL--------------------------------------------------------------EHI 746 (960)
T ss_dssp -CTTTH--HHHHHHH--------------------------------------------------------------HHH
T ss_pred -CCCCC--CHHHHHH--------------------------------------------------------------HHH
T ss_conf -99420--3599999--------------------------------------------------------------999
Q ss_pred HHHHCCC-HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-H---------HHHHHHHHHHHHHHCCC-C
Q ss_conf 9993998-299899979999985526999222144569699998621941-5---------75097469999984189-9
Q 001749 780 AKSMGPH-FAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP-I---------AAYVDRVMPLVLKELAS-P 847 (1018)
Q Consensus 780 ~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~---------~~~~~~l~~~l~~~l~~-~ 847 (1018)
+..+++. +.||++.+++.++..+........+...+..++.++-..++. . ..+..-+....+..+.. .
T Consensus 747 ~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~ 826 (960)
T 1wa5_C 747 MLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIG 826 (960)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCC
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCC
T ss_conf 99798777898899999999999831774749999999999999870879999999841605899999998536603016
Q ss_pred CHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9677878999999987514---8220468999998654100799999126767999999998748999994418999971
Q 001749 848 DAMNRRNAAFCVGELCKNG---GESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLK 924 (1018)
Q Consensus 848 ~~~vr~~a~~~lg~l~~~~---~~~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~ 924 (1018)
+..-|..++.|++.++... +..+.+.++.++.++..++....... .++. . + +
T Consensus 827 ~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-~~~~---------------~--~-------e 881 (960)
T 1wa5_C 827 NLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIAN-LKND---------------Y--V-------D 881 (960)
T ss_dssp SHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCSTTC-SCCS---------------C--C--------
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCC---------------C--C-------C
T ss_conf 789899999999999865122303578889999999999970876244-6775---------------3--3-------2
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 1899984773199999999998206824510045999999987259998--84789999999999998727619999-84
Q 001749 925 VLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEE--SSEVKSQVGMAFSHLISLYGQQMQPL-LS 1001 (1018)
Q Consensus 925 ~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~-~~ 1001 (1018)
.. |.++...--..+..|.........+ + +.. +.+.+..+.+.++.+.+.+|..+.++ .+
T Consensus 882 -~~---d~~~~~~~~~~~~~L~~~~~~~~dp------------~--~~i~~~~d~~~~~~~~l~~~~~~~~~~~~~l~~~ 943 (960)
T 1wa5_C 882 -LD---NLEEISTFGSHFSKLVSISEKPFDP------------L--PEIDVNNGVRLYVAEALNKYNAISGNTFLNTILP 943 (960)
T ss_dssp --------CCCCCTTCCCCCCGGGCCCCCCS------------C--TTSCTTTHHHHHHHHHHHHHHHHTTSCHHHHHGG
T ss_pred -CC---CCCCCCCCCHHHHHHHHCCCCCCCC------------H--HHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
T ss_conf -23---2100124016889988187889998------------3--4415767889999999999751397248899861
Q ss_pred CCCHHHHHHHHHHCCC
Q ss_conf 2899999999862689
Q 001749 1002 NLSPAHATALAAFAPK 1017 (1018)
Q Consensus 1002 ~l~~~~~~~l~~~~~~ 1017 (1018)
+|+++.|..|+.++..
T Consensus 944 ~l~~~~~~~l~~~~~~ 959 (960)
T 1wa5_C 944 QLTQENQVKLNQLLVG 959 (960)
T ss_dssp GSCHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHCC
T ss_conf 6999999999998723
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=411.60 Aligned_cols=762 Identities=15% Similarity=0.137 Sum_probs=503.6
Q ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 68999999993-19996999999999998735989299999998129996699999999998422000358978899999
Q 001749 2 AQSLELLLIQF-LMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (1018)
Q Consensus 2 ~~~l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vR~~a~~~l~~~i~~~w~~l~~~~~~~i~ 80 (1018)
.+++.++++.+ .++|++.|++|+++|++++++|+++..+.+++.++.++.+|++|+++|++.+.++|..++++.+..||
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir 102 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK 102 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHH
T ss_conf 99999999998359798999999999999846999999999986579725889999999999997388749999999999
Q ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHH----
Q ss_conf 99999973059--98799999999999970207899851049999996028-----88679999999999825653----
Q 001749 81 QSLIESITLEH--SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS-----EQEEHREVALILFSSLTETI---- 149 (1018)
Q Consensus 81 ~~Ll~~l~~e~--~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s-----~~~~~r~~al~~l~~l~~~~---- 149 (1018)
+.+++.+...+ ++.+|++++.+++.|++.++|. .||++++.+.+.+++ ++...++.++.++..+++..
T Consensus 103 ~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~ 181 (963)
T 2x19_B 103 AQLFTQITRFASGSKIVLTRLCVALASLALSMMPD-AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR 181 (963)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHCCC
T ss_conf 99999999874898899999999999999874831-15559999999986433578747889999999986899885065
Q ss_pred ---------HCCCCCCHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHCC-----------------------------
Q ss_conf ---------1034101999999999731999998-9999999999986610-----------------------------
Q 001749 150 ---------GQTFRPHFADMQALLLKCLQDETSN-RVRIAALKAIGSFLEF----------------------------- 190 (1018)
Q Consensus 150 ---------~~~~~~~~~~l~~~l~~~l~d~~~~-~vr~~a~~~l~~~~~~----------------------------- 190 (1018)
.+.+..+++.+++.+...+.+..+. .++..+++|+..++..
T Consensus 182 ~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~ 261 (963)
T 2x19_B 182 LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVE 261 (963)
T ss_dssp C---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 86999999999999878899999999982778805799999999999982899853416899999998679647999999
Q ss_pred --------CCCHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHH
Q ss_conf --------488146999983279999999---9986319888999999999997527850036------75999999999
Q 001749 191 --------TNDGAEVVKFREFIPSILNVS---RQCLASGEEDVAVIAFEIFDELIESPAPLLG------DSVKSIVHFSL 253 (1018)
Q Consensus 191 --------~~~~~~~~~~~~~~~~ll~~l---~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~~li~~l~ 253 (1018)
...+.....+..+++.++... ...+..++.+.....++.+..+++..+..+. +++..+++.++
T Consensus 262 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll 341 (963)
T 2x19_B 262 AIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIM 341 (963)
T ss_dssp HHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999753112457799999999997407999999987798999999999999999869999737556589999999999
Q ss_pred HHHCCC---CCCHHHHHHHHHHHHHHHHHH--------HHHH-HHCCCHHHHHHHHHHHHCCCCCCC-----CC--CCC-
Q ss_conf 973089---999689999999999999982--------8876-615884989999953212689888-----88--778-
Q 001749 254 EVSSSH---NLEPNTRHQAIQIISWLAKYK--------YNSL-KKHKLVIPILQVMCPLLAESNEAG-----ED--DDL- 313 (1018)
Q Consensus 254 ~~~~~~---~~~~~vr~~a~~~l~~~~~~~--------~~~~-~~~~~~~~il~~l~~~l~~~~~d~-----~d--~~~- 313 (1018)
.+..++ ..++.+...+++||..+++.. +... .-.+++..+++.++..+...++++ +| +++
T Consensus 342 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~ 421 (963)
T 2x19_B 342 FCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421 (963)
T ss_dssp HHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 99758888872034544129999999999986234445788999999999999999999809983022677763899999
Q ss_pred CHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 579999999999998734111087998888530----5999568889999999995229488998699999999861389
Q 001749 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSC----QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (1018)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d 389 (1018)
..|+.+..++..++...+..+++.+++.+...+ .+.+|+.|+++++++|.+++++.+...++++.+++.+. .+.+
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~ 500 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HCCC
T ss_conf 999999999999999706899999999999999725799866799899999999970438224678999999998-5799
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 97558999999999967320778997655489999983249985899989999999886300124443698999999962
Q 001749 390 PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (1018)
Q Consensus 390 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l 469 (1018)
+++.||.++++++|++++++... .++++.+++.++..+.+ ++|+..||.++..+++.+++.+.||++.+++.+..++
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l 577 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVL 577 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85899999999999888888758-89899999999987178--4689999999999999989987766999999999986
Q ss_pred CCC--CHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHC----CCCHH-HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 189--98599999999999999962-00621399999999999811----58212-456889999899999843031027
Q 001749 470 ENS--PRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVL----TNDED-LRSRARATELLGLVAESVGRARME 541 (1018)
Q Consensus 470 ~~~--~~~vr~~al~ai~~l~~~~~-~~~~~~~~~i~~~l~~~l~~----~~~~~-~~~r~~~~~~l~~l~~~~g~~~~~ 541 (1018)
... +...+..++++++.++...+ +.+.+|+..+++.+...+.. ..+++ ...+...+++++.++++++.. ..
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~-~~ 656 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDIS-HH 656 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSS-CC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CC
T ss_conf 35789848899999999999962999999999999998999999999827898778999999999999999774898-64
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 87299999998525999824779999999999987204735621224699996256898876688999401002689988
Q 001749 542 PILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS 621 (1018)
Q Consensus 542 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1018)
.....--+. -+.+++ .....+.++...++|.+...+....
T Consensus 657 ~~~~~~~~~----~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~~~--------------------- 696 (963)
T 2x19_B 657 EDDHEGPEL----RKLPVP---------------QGPNPVVVVLQQVFQLIQKVLSKWL--------------------- 696 (963)
T ss_dssp C----------------------------------CCCHHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred CCCCCCCCC----CCCCCC---------------CCCCCHHHHHHHHHHHHHHHHHHCC---------------------
T ss_conf 332223221----247777---------------8899469999999999999998566---------------------
Q ss_pred CCCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88400100146622666163001899999999999970105742089999874048992689999999999999997118
Q 001749 622 SDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTED 701 (1018)
Q Consensus 622 ~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~L~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e 701 (1018)
...+..+.++.+++.++..++..+.||++.++.. ++......
T Consensus 697 ------------------~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~--------------------l~~~~~~~ 738 (963)
T 2x19_B 697 ------------------NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM--------------------LGRMYSTI 738 (963)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHH--------------------HHHHHHHS
T ss_pred ------------------CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH--------------------HHHHHHCC
T ss_conf ------------------7468999999999999975010342407999999--------------------99998757
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 80999999999999999981986-41798999999999999513321188899987776775013999999874799999
Q 001749 702 DDKDVVAQACTSIVEIINDYGYM-AVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFA 780 (1018)
Q Consensus 702 ~~~~v~~~~~~~l~~~~~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~ 780 (1018)
+... .+..+..++...|.. ...+.
T Consensus 739 ~~~~----~l~l~~~li~~f~~~~~~~~~--------------------------------------------------- 763 (963)
T 2x19_B 739 PQAS----ALDLTRQLVHIFAHEPAHFPP--------------------------------------------------- 763 (963)
T ss_dssp CCHH----HHHHHHHHHHHHTTCTTTCHH---------------------------------------------------
T ss_pred CCCH----HHHHHHHHHHHHCCCCCHHHH---------------------------------------------------
T ss_conf 8508----999999999985778013789---------------------------------------------------
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHCCCCHH--HH-HHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 993998299899979999985526--99922214456969999862194157--50-97469999984189996778789
Q 001749 781 KSMGPHFAPIFAKLFDPLMKFAKS--SRPLQDRTMVVATLAEVARDMGSPIA--AY-VDRVMPLVLKELASPDAMNRRNA 855 (1018)
Q Consensus 781 ~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~~r~~a~~~l~~~~~~~~~~~~--~~-~~~l~~~l~~~l~~~~~~vr~~a 855 (1018)
+..++..++..++..+.. ...+..+...+..+..++++++..+. +. +..+++.++.+++..+..+..++
T Consensus 764 ------~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 837 (963)
T 2x19_B 764 ------IEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKAS 837 (963)
T ss_dssp ------HHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf ------99999999999999986276558638999999999999758398729851479999999997578977999999
Q ss_pred HHHHHHHHHHCC--C----CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999999875148--2----20468999998654100799999126767999999998748
Q 001749 856 AFCVGELCKNGG--E----SALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVN 909 (1018)
Q Consensus 856 ~~~lg~l~~~~~--~----~~~~~~~~il~~L~~~l~~~~~~~~~~~na~~al~~l~~~~ 909 (1018)
+..+..++...+ + .+.++.+.++..+...+.+. ..+...+..+..+..++..+
T Consensus 838 l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~il~~l~~~~ 896 (963)
T 2x19_B 838 CGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQ-ASRSLMDCFADILFALNKHC 896 (963)
T ss_dssp HHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTT-SCGGGHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHC
T ss_conf 999999985189737899999997999999999985335-98467788999999999977
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=404.90 Aligned_cols=588 Identities=13% Similarity=0.151 Sum_probs=438.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 68999999993199969999999999987359892999999981299966999999999984220003589788999999
Q 001749 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1018)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vR~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 81 (1018)
.++++++++.+++||++.|++|+++|++++++|+++..+.+++..+.++.+|++|+++|++.+.++|..++++.+..+|+
T Consensus 6 ~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~ 85 (971)
T 2x1g_F 6 IARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQ 85 (971)
T ss_dssp -----CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHH
T ss_conf 99999999987699999999999999998749798999999983599498999999999999971586499999999999
Q ss_pred HHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHH---
Q ss_conf 9999973059--987999999999999702078998510499999960288------86799999999998256531---
Q 001749 82 SLIESITLEH--SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE------QEEHREVALILFSSLTETIG--- 150 (1018)
Q Consensus 82 ~Ll~~l~~e~--~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~------~~~~r~~al~~l~~l~~~~~--- 150 (1018)
.+++.+.... ++.||++++.+++.|++.++| .||++++.+.+.++++ ++..++.++.++..+++...
T Consensus 86 ~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 86 KILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999986799878999999999999997062--243799999999715334567878899999999998599882468
Q ss_pred ---------CCCCCCHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHHHC--CCCCH------------------
Q ss_conf ---------03410199999999973199999-------8999999999998661--04881------------------
Q 001749 151 ---------QTFRPHFADMQALLLKCLQDETS-------NRVRIAALKAIGSFLE--FTNDG------------------ 194 (1018)
Q Consensus 151 ---------~~~~~~~~~l~~~l~~~l~d~~~-------~~vr~~a~~~l~~~~~--~~~~~------------------ 194 (1018)
+.+...++.+++++..++.+..+ ..++..+++|+..++. +.+..
T Consensus 164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~~~~ 243 (971)
T 2x1g_F 164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYW 243 (971)
T ss_dssp CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 57899999999998799999999999855467888864236799999999999825783865663199999864355302
Q ss_pred --------------H---------------------HHHHHHHHHHHHHHHHHHH---HHCCCH---HHHHHHHHHHHHH
Q ss_conf --------------4---------------------6999983279999999998---631988---8999999999997
Q 001749 195 --------------A---------------------EVVKFREFIPSILNVSRQC---LASGEE---DVAVIAFEIFDEL 233 (1018)
Q Consensus 195 --------------~---------------------~~~~~~~~~~~ll~~l~~~---l~~~~~---~~~~~a~~~L~~l 233 (1018)
. ....+..++|.+++..... +.+++. +.....++.+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~ 323 (971)
T 2x1g_F 244 PCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSS 323 (971)
T ss_dssp SSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 32356655567677479999999999997680113208899999999998689999998565654068999999999999
Q ss_pred HCCCCCCHH-----------HHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHH--------HHH--HHCCC
Q ss_conf 527850036-----------75999999999973089---9996899999999999999828--------876--61588
Q 001749 234 IESPAPLLG-----------DSVKSIVHFSLEVSSSH---NLEPNTRHQAIQIISWLAKYKY--------NSL--KKHKL 289 (1018)
Q Consensus 234 ~~~~~~~~~-----------~~~~~li~~l~~~~~~~---~~~~~vr~~a~~~l~~~~~~~~--------~~~--~~~~~ 289 (1018)
.+.....+. +++..+++.++.+...+ ..++++...+++||..+++... ... .-.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~ 403 (971)
T 2x1g_F 324 VERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPL 403 (971)
T ss_dssp HHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999987315765354999999999999975888888631245878999999999997413310008999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCC-----CCHHHHH
Q ss_conf 49899999532126898888877---------857999999999999873411108799888853059-----9956888
Q 001749 290 VIPILQVMCPLLAESNEAGEDDD---------LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN-----ASPKYRE 355 (1018)
Q Consensus 290 ~~~il~~l~~~l~~~~~d~~d~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~-----~~~~~r~ 355 (1018)
+..+++.++..+.-.++++ .++ .+.|+++..++..++...++.+++.+++.+.+.+.+ .+|+.|+
T Consensus 404 ~~~ll~~l~~~~~~p~~~~-~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~e 482 (971)
T 2x1g_F 404 YAHLTRILVRKSEQPDEKS-LAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLE 482 (971)
T ss_dssp HHHHHHHHHHHTSCCCTTT-TSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 9999999999861999624-335677579999999999999999999997099999999999999973468987389999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 999999999522948899869999999986138--997558999999999967320778997655489999983249985
Q 001749 356 AAVTAIGIISEGCAEWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD 433 (1018)
Q Consensus 356 aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~ 433 (1018)
+++++++.+++++.+...++++.+++. +..+. |+++.||.++++++|++++++... .++++.+++.++..+ + +
T Consensus 483 aal~~l~~iae~~~~~~~~~l~~l~~~-l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~ 557 (971)
T 2x1g_F 483 ACIYSFQSVAEHFGGEEKRQIPRLMRV-LAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--S 557 (971)
T ss_dssp HHHHHHHHTTTC------CHHHHHHHH-HHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--S
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-C--H
T ss_conf 999999999835480334779999999-9856765367899999999999878888608-898999999999874-8--5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q ss_conf 89998999999988630012444369899999996218--998599999999999999962-006213999999999998
Q 001749 434 EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN--SPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFM 510 (1018)
Q Consensus 434 ~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~vr~~al~ai~~l~~~~~-~~~~~~~~~i~~~l~~~l 510 (1018)
+|+..|+.++..+++.++..+.||++.+++.+..+++. .+...+..++++++.++...+ +.+.+|+..+++.+...+
T Consensus 558 ~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l 637 (971)
T 2x1g_F 558 SMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEEL 637 (971)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999998886230079999999999727899928999999999999972999999999999998999999
Q ss_pred H----CCC-CH-HHHHHHHHHHHHHHHHHHHHH------------HHCCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHH
Q ss_conf 1----158-21-245688999989999984303------------1027872999999985259--99824779999999
Q 001749 511 V----LTN-DE-DLRSRARATELLGLVAESVGR------------ARMEPILPPFVEAAISGFG--LEFSELREYTHGFF 570 (1018)
Q Consensus 511 ~----~~~-~~-~~~~r~~~~~~l~~l~~~~g~------------~~~~~~~~~l~~~l~~~l~--~~~~~~~~~~~~~l 570 (1018)
. ... ++ .......++++++.+..+++. +.+.++.+.+++.+...++ .++.++.+.++.++
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~ 717 (971)
T 2x1g_F 638 QAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAM 717 (971)
T ss_dssp HHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99985689982259999999999999984167776853334567883699999999999999986436378999999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999987204735621224699996256
Q 001749 571 SNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (1018)
Q Consensus 571 ~~l~~~~~~~~~~~l~~i~~~ll~~~~ 597 (1018)
+.++.++|.++.||+|.+++.++...+
T Consensus 718 ~~~~~~~~~~~~p~l~~~~~~l~~~~~ 744 (971)
T 2x1g_F 718 KHAITNLRSSFQPMLQDLCLFIVASFQ 744 (971)
T ss_dssp HHHHHHHHC--CTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999986144042527899999999986
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=383.21 Aligned_cols=759 Identities=13% Similarity=0.135 Sum_probs=572.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCC------
Q ss_conf 999981299966999999999984220003589788999999999997305-9987999999999999702078------
Q 001749 40 LVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAVP------ 112 (1018)
Q Consensus 40 l~~il~~~~~~~vR~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~~------ 112 (1018)
+++.+. +++..+|+.|...|++.-. +....+...|++.+.++ .+..+|..++.++........+
T Consensus 6 ~L~~~~-s~d~~~r~~A~~~L~~~~~--------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (876)
T 1qgr_A 6 ILEKTV-SPDRLELEAAQKFLERAAV--------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (876)
T ss_dssp HHHGGG-CSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 999762-9898999999999999871--------6804699999999857899879999999999876055434767899
Q ss_pred CCCCCCHHHH--------HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q ss_conf 9985104999--------99960288867999999999982565310341019999999997319999--9899999999
Q 001749 113 AGEWPDLLPF--------LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET--SNRVRIAALK 182 (1018)
Q Consensus 113 ~~~w~~ll~~--------l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~--~~~vr~~a~~ 182 (1018)
...|+.+-+. +.+.+.++++.. ..+..+++.++..... ..+++.+++.+...+.+ + ++.+|..++.
T Consensus 77 ~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~-~~~~~~~r~~al~ 152 (876)
T 1qgr_A 77 QQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTN-PNSTEHMKESTLE 152 (876)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHC-TTCCHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHC-CCCCHHHHHHHHH
T ss_conf 864406999999999999999867994788-9999999999984676--22568899999998708-8987999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHHCC
Q ss_conf 999866104881469999832799999999986319--8889999999999975278500367--599999999997308
Q 001749 183 AIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG--EEDVAVIAFEIFDELIESPAPLLGD--SVKSIVHFSLEVSSS 258 (1018)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~li~~l~~~~~~ 258 (1018)
+++.++..... ..+...++.++..+.+.+.++ +.+++..+++++..++......+.. ....+++.+.+...
T Consensus 153 ~l~~l~~~~~~----~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~- 227 (876)
T 1qgr_A 153 AIGYICQDIDP----EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ- 227 (876)
T ss_dssp HHHHHHHHSCH----HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHCCH----HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 99999874587----6678679999999998616799988999999999999999999988717899999999998717-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-------
Q ss_conf 999968999999999999998288766158849-899999532126898888877857999999999999873-------
Q 001749 259 HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVI-PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL------- 330 (1018)
Q Consensus 259 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-~il~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~------- 330 (1018)
+.++++|..+++++..+++..+..+.. ++. .+++.++..+.+ ++..++..+..++..++...
T Consensus 228 -~~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~l~~~~~~~~~~-------~~~~v~~~al~~l~~l~~~~~~~~~~~ 297 (876)
T 1qgr_A 228 -CPDTRVRVAALQNLVKIMSLYYQYMET--YMGPALFAITIEAMKS-------DIDEVALQGIEFWSNVCDEEMDLAIEA 297 (876)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHSGGGCHH--HHTTTHHHHHHHHHTC-------SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -998899999999999999986999998--8778999999999638-------734999999999999988787676651
Q ss_pred ------------C-----HHCHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf ------------4-----1110879988885305-------999568889999999995229488998699999999861
Q 001749 331 ------------A-----KHVFPPVFEFASVSCQ-------NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA 386 (1018)
Q Consensus 331 ------------~-----~~~~~~~~~~l~~~l~-------~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~ 386 (1018)
+ ...+..+++.+...+. +.+|..|.++..+++.++..+++ ..++.+++.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~ 374 (876)
T 1qgr_A 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEH 374 (876)
T ss_dssp HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHH
T ss_conf 0011247775420189999989887079998753133444545217999999999999987758---6699999999988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHH
Q ss_conf 3899755899999999996732077-899765548999998324998589998999999988630012--4443698999
Q 001749 387 LRDPEQFVRGAASFALGQFAEYLQP-EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE--ILPFLDPLMG 463 (1018)
Q Consensus 387 l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~--~~~~~~~i~~ 463 (1018)
+.|+++.+|.+++++++.++...++ .+.++++.++|.++..+.|+++.||..++++++.+++..+.. ..+|++.+++
T Consensus 375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~ 454 (876)
T 1qgr_A 375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHH
T ss_conf 46998289999999999997488777899999999999999867997899999999999999857201144777999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99996218998599999999999999962--------------0062139999999999981158212456889999899
Q 001749 464 KLLAALENSPRNLQETCMSAIGSVAAAAE--------------QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLG 529 (1018)
Q Consensus 464 ~l~~~l~~~~~~vr~~al~ai~~l~~~~~--------------~~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~~~~~l~ 529 (1018)
.++..+.+. ..+|..++.+++.++...+ +.+.||++.++|.+...+...+.+...+|..++++++
T Consensus 455 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~ 533 (876)
T 1qgr_A 455 CLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLM 533 (876)
T ss_dssp HHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 999987588-8899999999999999850201234444555403215769999999999972767420469999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCC-----------CCC----HHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH
Q ss_conf 999843031027872999999985259-----------998----2477999999999998720-473562122469999
Q 001749 530 LVAESVGRARMEPILPPFVEAAISGFG-----------LEF----SELREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAF 593 (1018)
Q Consensus 530 ~l~~~~g~~~~~~~~~~l~~~l~~~l~-----------~~~----~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll 593 (1018)
.++..+|. .+.+++..+++.++..+. .++ ++++..++.+++.++..+| ..+.||++.++|.++
T Consensus 534 ~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~ 612 (876)
T 1qgr_A 534 EIVKNSAK-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLL 612 (876)
T ss_dssp HHHHTCCS-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHH
T ss_pred HHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 99997743-11899999999999999999988712488635999999999999999999998285420578999999999
Q ss_pred HHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 62568988766889994010026899888840010014662266616300189999999999997010574208999987
Q 001749 594 SSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKI 673 (1018)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~L~~~~~~~~~~~~p~~~~~~~~ 673 (1018)
..++...+ + ...+..++.+++.++...+..|.||++.+
T Consensus 613 ~~l~~~~~-------------------------------~--------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--- 650 (876)
T 1qgr_A 613 RMFQSTAG-------------------------------S--------GGVQEDALMAVSTLVEVLGGEFLKYMEAF--- 650 (876)
T ss_dssp HHC------------------------------------C--------CHHHHHHHHHHHHHHHHHGGGGGGGHHHH---
T ss_pred HHHHHCCC-------------------------------C--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf 99985368-------------------------------8--------88508999999999999876099999999---
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 40489926899999999999999971188099999999999999998198641798999999999999513321188899
Q 001749 674 LSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDND 753 (1018)
Q Consensus 674 l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~ 753 (1018)
++.+...+....+.+++..++.+++.+.+..|.. +.++++.+++.+.+.+... +
T Consensus 651 -----------------~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~--------~ 704 (876)
T 1qgr_A 651 -----------------KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN-IIPFCDEVMQLLLENLGNE--------N 704 (876)
T ss_dssp -----------------HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHHHTCT--------T
T ss_pred -----------------HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC--------C
T ss_conf -----------------9999998758650879999999999999988785-4645999999999974871--------2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC----------CCCHHHHHHHHHHHHH
Q ss_conf 987776775013999999874799999993998299899979999985526999----------2221445696999986
Q 001749 754 SDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRP----------LQDRTMVVATLAEVAR 823 (1018)
Q Consensus 754 ~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~----------~~~r~~a~~~l~~~~~ 823 (1018)
.+..+...+..+++.++..+|+.|.+|++.++|.+.+.+..... ...|..++.++..++.
T Consensus 705 ----------~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~ 774 (876)
T 1qgr_A 705 ----------VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQ 774 (876)
T ss_dssp ----------SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------3387639999999999997035279999999999999985558999758899999999999999999999
Q ss_pred HCCC----------CHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHH-CCCCC
Q ss_conf 2194----------15750974699999841899--967787899999998751482-20468-9999986541-00799
Q 001749 824 DMGS----------PIAAYVDRVMPLVLKELASP--DAMNRRNAAFCVGELCKNGGE-SALKY-YGDILRGLYP-LFGDS 888 (1018)
Q Consensus 824 ~~~~----------~~~~~~~~l~~~l~~~l~~~--~~~vr~~a~~~lg~l~~~~~~-~~~~~-~~~il~~L~~-~l~~~ 888 (1018)
..|. .+.+|++.+++.+.....++ +..+|..|+.++|.++...+. .+.++ .+.+++.+.. .+.
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~-- 852 (876)
T 1qgr_A 775 GLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRR-- 852 (876)
T ss_dssp HHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHH--
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHH--
T ss_conf 974575555543889999999999999998658888889999999999999988284889999704899999998754--
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99912676799999999874899
Q 001749 889 EPDDAVRDNAAGAVARMIMVNPQ 911 (1018)
Q Consensus 889 ~~~~~~~~na~~al~~l~~~~~~ 911 (1018)
+.+..+|.+|+.|+|.+.+..+.
T Consensus 853 ~~~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 853 SKTNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 68876899999999999975347
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=380.33 Aligned_cols=936 Identities=13% Similarity=0.161 Sum_probs=628.3
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 29999999812999669999999999842200035897889999999999973059987999999999999702078998
Q 001749 36 VVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE 115 (1018)
Q Consensus 36 ~~~~l~~il~~~~~~~vR~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~ 115 (1018)
.+..+++-+. ++++.+|..|..-|.+.+......+++.....+...+++.+. ++++.+|+.++.+++.++....+ ..
T Consensus 7 ~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 7 HISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp HHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCH-HH
T ss_conf 9999997558-987859999999999997416657875679999999999866-99989999999999999975879-89
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 5104999999602888679999999999825653103------4101999999999731999998999999999998661
Q 001749 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT------FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (1018)
Q Consensus 116 w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~ 189 (1018)
++.+++.+...+.+++...|..+..+++.++...+.. ...+.+.+++.+..++.+.+++.+|..|+.+++.++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999998669838899999999999999679744444117889999999999987578846799999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 04881469999832799999999986319888999999999997527850-03675999999999973089999689999
Q 001749 190 FTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP-LLGDSVKSIVHFSLEVSSSHNLEPNTRHQ 268 (1018)
Q Consensus 190 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~li~~l~~~~~~~~~~~~vr~~ 268 (1018)
..+.. +..+++.++..+...+.+++..++..++.++..++...+. ++...++.+++.+.. . .+..+|..
T Consensus 164 ~~~~~-----l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~----~-~~~~~r~~ 233 (1230)
T 1u6g_C 164 RQGGL-----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK----N-DSMSTTRT 233 (1230)
T ss_dssp HTCSS-----CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH----T-CSSCSCTT
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC----C-CCHHHHHH
T ss_conf 82767-----78879999999999875996899999999999999856899999999999998616----7-75568999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH---CHHHHHHHHHHH
Q ss_conf 99999999998288766158849899999532126898888877857999999999999873411---108799888853
Q 001749 269 AIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---VFPPVFEFASVS 345 (1018)
Q Consensus 269 a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~l~~~ 345 (1018)
+++++..+++..+..+. +++..+++.++..+.+. +..+|..+..++..++..++.. .++.+++.+...
T Consensus 234 a~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~d~-------~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 234 YIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCNVD-------DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp HHHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHSSC-------CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998689899--88999999999986689-------7789999999999999978487777689999999998
Q ss_pred HC-------------------------------------CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 05-------------------------------------99956888999999999522948899869999999986138
Q 001749 346 CQ-------------------------------------NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR 388 (1018)
Q Consensus 346 l~-------------------------------------~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~ 388 (1018)
+. +..|++|.+|+.+++.++...++.+.++++.+++.+...+.
T Consensus 305 l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 384 (1230)
T 1u6g_C 305 LTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFK 384 (1230)
T ss_dssp CCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_conf 27899888764411011223344653011001366645556779999999999999974666799999999899998717
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-------------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9975589999999999673207-------------------789976554899999832499858999899999998863
Q 001749 389 DPEQFVRGAASFALGQFAEYLQ-------------------PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (1018)
Q Consensus 389 d~~~~Vr~~a~~~l~~l~~~~~-------------------~~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (1018)
|.+..||.+++.+++.++...+ ..+..+++.+++.+.+.+.++++++|..++.+++.++..
T Consensus 385 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 385 EREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98657999999999999997242434346752013564559999987469999999986137787999999999999997
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 001244436989999999621899--85999999999999999620-062139999999999981158212456889999
Q 001749 450 MGEEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQ-AFIPYAERVLELLKIFMVLTNDEDLRSRARATE 526 (1018)
Q Consensus 450 ~~~~~~~~~~~i~~~l~~~l~~~~--~~vr~~al~ai~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~r~~~~~ 526 (1018)
.+..+.+|++.+++.+...+.+.. ..++..++.+++.+....+. .|.||++.++|.+...+.. ...+++..++.
T Consensus 465 ~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d---~~~~v~~~al~ 541 (1230)
T 1u6g_C 465 LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD---PFYKITSEALL 541 (1230)
T ss_dssp STTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC---SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHH
T ss_conf 611057779999999999974878851689999999999998389887886799999999999714---24689999999
Q ss_pred HHHHHHHHHHH------HHCCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 89999984303------102787299999998525--9998247799999999999872047356212246999962568
Q 001749 527 LLGLVAESVGR------ARMEPILPPFVEAAISGF--GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNL 598 (1018)
Q Consensus 527 ~l~~l~~~~g~------~~~~~~~~~l~~~l~~~l--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~ 598 (1018)
+++.++..+|+ ..+.||.+.+++.++..+ .+.+..+|..+..+++.++...|+.+.+|++.+++.+...+..
T Consensus 542 ~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~ 621 (1230)
T 1u6g_C 542 VTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN 621 (1230)
T ss_dssp HHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999987167555653232789999999999987326998899999999999999982703244388999999988445
Q ss_pred CCCC------------C---CC---------------CCCCCHH---H----CCCC---CCCCCCCCHHHCCCCCCEE-E
Q ss_conf 9887------------6---68---------------8999401---0----0268---9988884001001466226-6
Q 001749 599 DDGS------------A---VD---------------IDGSDDE---N----INGF---GGVSSDDEAHCERSVRNIS-V 637 (1018)
Q Consensus 599 ~~~~------------~---~~---------------~~~~~~~---~----~~~~---~~~~~~~~~~~~~~~~~~~-i 637 (1018)
.... . .+ ..+++.. . ...+ .+...+...-...-..... +
T Consensus 622 e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll 701 (1230)
T 1u6g_C 622 EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLI 701 (1230)
T ss_dssp SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGS
T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 30599999999999818564436888999999999999867888999999999999960433389899999999987635
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHCCCCHH-HHH---HHHHHH---------HHHHHHHHHH
Q ss_conf 61630018999999999999701057420----899998740489926-899---999999---------9999999711
Q 001749 638 RTGVLDEKAAATQALGLFALHTKSSYAPF----LEESLKILSHNEGPA-KAR---EILDTV---------MNIFIRTMTE 700 (1018)
Q Consensus 638 ~t~~~~~k~~a~~~L~~~~~~~~~~~~p~----~~~~~~~l~~~~~~~-~~~---~~~~~~---------~~~l~~~l~~ 700 (1018)
.....+++..+.++|..++...+..+.++ ++.++..+....-+. ... .++..+ ++.++..+..
T Consensus 702 ~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~ 781 (1230)
T 1u6g_C 702 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTG 781 (1230)
T ss_dssp CTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 75418789999999999988491267776776899999997586210578999999999998347887889999999850
Q ss_pred C--------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-------------HHHHHHHHHHHHCCCCCCCCCCC-
Q ss_conf 8--------8099999999999999998198641798999999-------------99999951332118889998777-
Q 001749 701 D--------DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVD-------------ATLLLLREESTCQQPDNDSDIED- 758 (1018)
Q Consensus 701 e--------~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~i~~-------------~l~~~l~~~~~~~~~~~~~~~~~- 758 (1018)
. .+..+......+++.++...|+... ..+..++. .....+..-..........+...
T Consensus 782 ~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~ 860 (1230)
T 1u6g_C 782 PVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSV 860 (1230)
T ss_dssp TTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 0357887320001048999999999984656668-999999998378876679999999999986156787656418999
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHH
Q ss_conf --67750139999998747999999939982998999799999855269992221445696999986219-415750974
Q 001749 759 --DDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMG-SPIAAYVDR 835 (1018)
Q Consensus 759 --~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~-~~~~~~~~~ 835 (1018)
.--....+.+...++..++.++. .....++|.+++.+.++ ...|...+..+.+++...+ ....++.++
T Consensus 861 ~~~~l~~~~~~Vr~aAa~aLg~l~~-------~~~~~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~~~~~~~ 931 (1230)
T 1u6g_C 861 ILEAFSSPSEEVKSAASYALGSISV-------GNLPEYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKPYVEN 931 (1230)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHH-------HTHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTTHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9998479977899999999687752-------69998899999987266--03249889999999823876667766999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHH----------------------------------HHHHHHHHH
Q ss_conf 6999998418999677878999999987514822046----------------------------------899999865
Q 001749 836 VMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALK----------------------------------YYGDILRGL 881 (1018)
Q Consensus 836 l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~----------------------------------~~~~il~~L 881 (1018)
+++.+.+.+.+.+..+|..++.++|.++...++.+.| +++.+++.+
T Consensus 932 i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~l 1011 (1230)
T 1u6g_C 932 IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF 1011 (1230)
T ss_dssp HHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999987338304468999988756650676888899999856997889999999999997068233589899989999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHCCCCCCH-----------------HHHHHHHHHH
Q ss_conf 41007999991267679999999987489999-9-441899997118999847-----------------7319999999
Q 001749 882 YPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLKVLPLKEDF-----------------EESMAVYNCI 942 (1018)
Q Consensus 882 ~~~l~~~~~~~~~~~na~~al~~l~~~~~~~~-~-~~~~l~~~l~~lp~~~d~-----------------~e~~~~~~~l 942 (1018)
...+. +++..+|.+|+.+++.+++..|..+ + ++.++|.+++..+.+.+. +.++.++.++
T Consensus 1012 l~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~ 1089 (1230)
T 1u6g_C 1012 LKTLE--DPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECM 1089 (1230)
T ss_dssp HHHHS--SSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHH
T ss_pred HHHCC--CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98648--9858799999999999984285768977988989999883026876013305896023677489999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99982068245100459999999872599988478999999999999872761999984289999999986
Q 001749 943 STLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAA 1013 (1018)
Q Consensus 943 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1013 (1018)
..++..+.+.+. +..++..+...+.. +.+++.....++..+.+..|....+.+.++-+..+..|+.
T Consensus 1090 ~~ll~~~~~~i~--~~~~~~~~~~gl~d---~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 1155 (1230)
T 1u6g_C 1090 YTLLDSCLDRLD--IFEFLNHVEDGLKD---HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTT 1155 (1230)
T ss_dssp HHHHHSSCSSSC--HHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHCC--HHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998887478--99999999804676---6889999999999998408798999999999999999841
No 10
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=376.59 Aligned_cols=766 Identities=13% Similarity=0.136 Sum_probs=520.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 68999999993199969999999999987359892999999981299966999999999984220003589788999999
Q 001749 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (1018)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vR~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 81 (1018)
.+++.++++.+++|+++.|++|+++|++++++|+++..+.+++.++.++.+|++|+++|++.+.++|..++++.+..||+
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999998689938999999999998839569999999986299889999999999999976070499999999999
Q ss_pred HHHHHHHHCC--------CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC--
Q ss_conf 9999973059--------987999999999999702078998510499999960288867999999999982565310--
Q 001749 82 SLIESITLEH--------SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-- 151 (1018)
Q Consensus 82 ~Ll~~l~~e~--------~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~-- 151 (1018)
.+++.+.+++ ++.+|++++.+++.|++.++| +.||++++.+.+.++ .+...++.++.+|..+++...+
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~ 172 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFS 172 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999862776200000289999999999999997681-115479999999871-585889999999999999998726
Q ss_pred --------------CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH--------------------
Q ss_conf --------------3410199999999973199999899999999999866104881469--------------------
Q 001749 152 --------------TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV-------------------- 197 (1018)
Q Consensus 152 --------------~~~~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~-------------------- 197 (1018)
.+..+++.+++.+..++.+.++..++..+++|+..++.|.+.+...
T Consensus 173 ~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~ 252 (1049)
T 3m1i_C 173 AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRA 252 (1049)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 00132689999999999999999999999998668889999999999999860889988605599999998689876799
Q ss_pred ----------------------HHHHHHHHHHHHHHHH-----------HH---HCCCHHHHHHHHHHHHHHHCCC----
Q ss_conf ----------------------9998327999999999-----------86---3198889999999999975278----
Q 001749 198 ----------------------VKFREFIPSILNVSRQ-----------CL---ASGEEDVAVIAFEIFDELIESP---- 237 (1018)
Q Consensus 198 ----------------------~~~~~~~~~ll~~l~~-----------~l---~~~~~~~~~~a~~~L~~l~~~~---- 237 (1018)
..+..+++.+++.+.. .. .+.+.+.....++.+..+++..
T Consensus 253 ~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~ 332 (1049)
T 3m1i_C 253 ITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALL 332 (1049)
T ss_dssp HHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999994889950346889999999999999988627985417877445771028999999999999999999998
Q ss_pred --CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHH-HHHCCCHHHHHHHHHHHHCCCCCCC---
Q ss_conf --5003675999999999973089999689999999999999982---887-6615884989999953212689888---
Q 001749 238 --APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---YNS-LKKHKLVIPILQVMCPLLAESNEAG--- 308 (1018)
Q Consensus 238 --~~~~~~~~~~li~~l~~~~~~~~~~~~vr~~a~~~l~~~~~~~---~~~-~~~~~~~~~il~~l~~~l~~~~~d~--- 308 (1018)
++.+.+++..+++.++.+...+ +++++..+++||..+++.. +.. ....+++..+++.+++.|...++++
T Consensus 333 ~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~ 410 (1049)
T 3m1i_C 333 ESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVE 410 (1049)
T ss_dssp HSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 288214799999999999988689--089999999999999999974635899999999999999998658996200005
Q ss_pred ------------CCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCHHHHH-
Q ss_conf ------------887785799999999999987341110879988885305--99956888999999999522948899-
Q 001749 309 ------------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ--NASPKYREAAVTAIGIISEGCAEWMK- 373 (1018)
Q Consensus 309 ------------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~i~~~~~~~~~- 373 (1018)
++|+|+.++++..+|+.++...+..+++.+.+.+...+. +.+|+.|+++++++|++++++.+...
T Consensus 411 dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~ 490 (1049)
T 3m1i_C 411 NDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK 490 (1049)
T ss_dssp CTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred CCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 79985048653122279999999999999883698999999999999872778789899999999999986023762557
Q ss_pred HHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 869999999986138-----997558999999999967320778997655489999983249985899989999999886
Q 001749 374 EKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (1018)
Q Consensus 374 ~~l~~l~~~l~~~l~-----d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (1018)
.+++.+++.+..... |+++.||..++|++|++++++... .++++.+++.++..+.+++++|+..||.++..+++
T Consensus 491 ~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 491 RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999877654356654999988999999779999867-89999999999998618987899999999999999
Q ss_pred HHCCCCC--------CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 3001244--------4369899999996218998599999999999999962--00621399999999999811582124
Q 001749 449 DMGEEIL--------PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYAERVLELLKIFMVLTNDEDL 518 (1018)
Q Consensus 449 ~~~~~~~--------~~~~~i~~~l~~~l~~~~~~vr~~al~ai~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~ 518 (1018)
.+++.+. ||++.++..+..++...+..-...++++++.++...+ +...+|+..+++.+.+.+...
T Consensus 570 ~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 644 (1049)
T 3m1i_C 570 KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI----- 644 (1049)
T ss_dssp HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH-----
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf 988986115677877579999998999998589999999999999999759978999999999998899999999-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHH-HH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 5688999989999984303102787299999998525999824-77--99999999999872047356212246999962
Q 001749 519 RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSE-LR--EYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSS 595 (1018)
Q Consensus 519 ~~r~~~~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~-~~--~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~ 595 (1018)
+..... +++. .. +++ .+ ...+.+++.++..+|..|.|+++.+++.++..
T Consensus 645 ---------~~~~~~--~~~~---------------~~--d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~ 696 (1049)
T 3m1i_C 645 ---------VEQSTA--NPTL---------------LL--DSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQL 696 (1049)
T ss_dssp ---------HHHHHH--CGGG---------------GG--SHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred ---------HHHHHH--CHHH---------------HC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------998731--6464---------------04--8799999999999999999985678899999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHH-----CCCCCCCHHHHH
Q ss_conf 568988766889994010026899888840010014662266616300189999999999997-----010574208999
Q 001749 596 CNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALH-----TKSSYAPFLEES 670 (1018)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~L~~~~~~-----~~~~~~p~~~~~ 670 (1018)
.+. . ...+...... .+..+.++...
T Consensus 697 ~~~------------------------------------------------~-~~~~~~~~~~~g~~~~~~p~~~~~~~- 726 (1049)
T 3m1i_C 697 YRA------------------------------------------------V-SSMISAQVAAEGLIATKTPKVRGLRT- 726 (1049)
T ss_dssp HHH------------------------------------------------H-HHHHHHHHHHHCGGGGGSHHHHHHHH-
T ss_pred HHH------------------------------------------------H-HHHHHHHHHCCCCHHHHHHHHHHHHH-
T ss_conf 999------------------------------------------------9-99899999705850221088999999-
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98740489926899999999999999971188099999999999999998198641798999999999999513321188
Q 001749 671 LKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQP 750 (1018)
Q Consensus 671 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 750 (1018)
.+..+.. +++.+.... .++.. ...++++.+++.+...+.+...+.
T Consensus 727 ---------------~~~~l~~-ll~~~~~~~---------~~l~~--------~~~~~~~~~l~~ll~~~~~~~~~~-- 771 (1049)
T 3m1i_C 727 ---------------IKKEILK-LVETYISKA---------RNLDD--------VVKVLVEPLLNAVLEDYMNNVPDA-- 771 (1049)
T ss_dssp ---------------HHHHHHH-HHHHHHHHC---------SCHHH--------HHHHTHHHHHHHHHHHHHHSCGGG--
T ss_pred ---------------HHHHHHH-HHHHHHHHC---------CCHHH--------HHHHHHHHHHHHHHHHHHHCCCCC--
T ss_conf ---------------9999999-999999847---------97799--------999878999999999887189632--
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HCC--CCCCCCHHHHHHHHHHHHHH
Q ss_conf 899987776775013999999874799999993998299899979999985----526--99922214456969999862
Q 001749 751 DNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKF----AKS--SRPLQDRTMVVATLAEVARD 824 (1018)
Q Consensus 751 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~l~~~l~~~----l~~--~~~~~~r~~a~~~l~~~~~~ 824 (1018)
.+ ..+.++++.++..+|+.+.+++..+++.+... +.. +..+..|...+..++.++.+
T Consensus 772 -------------~~----~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~ 834 (1049)
T 3m1i_C 772 -------------RD----AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEK 834 (1049)
T ss_dssp -------------CC----THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHH
T ss_pred -------------CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHH
T ss_conf -------------36----8799999999999887606668999999999999998524210899999999999999986
Q ss_pred CCCCHHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---C-C-----HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1941575----097469999984189996778789999999875148---2-2-----0468999998654100799999
Q 001749 825 MGSPIAA----YVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGG---E-S-----ALKYYGDILRGLYPLFGDSEPD 891 (1018)
Q Consensus 825 ~~~~~~~----~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~---~-~-----~~~~~~~il~~L~~~l~~~~~~ 891 (1018)
++..+.+ .+..++..++.++..+++.+..+++..+-.++.... + . +..++..+++.+...+.+.. .
T Consensus 835 ~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~-h 913 (1049)
T 3m1i_C 835 SFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD-H 913 (1049)
T ss_dssp CTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTT-C
T ss_pred CHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH-H
T ss_conf 789997599999999999999994799816999999999999999876288688999999999999999999985642-7
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 12676799999999874
Q 001749 892 DAVRDNAAGAVARMIMV 908 (1018)
Q Consensus 892 ~~~~~na~~al~~l~~~ 908 (1018)
....+..+..+.+++..
T Consensus 914 ~s~~~~~~~~l~~l~~~ 930 (1049)
T 3m1i_C 914 KSGFSKQALLLMKLISL 930 (1049)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 52189999999999999
Done!