Query 001750
Match_columns 1018
No_of_seqs 683 out of 4061
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 2E-171 3E-176 1508.6 55.0 830 101-1018 184-1053(1373)
2 KOG0385 Chromatin remodeling c 100.0 9E-133 2E-137 1130.7 47.9 668 275-1017 157-843 (971)
3 PLN03142 Probable chromatin-re 100.0 5E-107 1E-111 1000.3 51.4 688 272-1017 157-873 (1033)
4 KOG0386 Chromatin remodeling c 100.0 6.2E-99 1E-103 876.7 33.9 507 272-810 381-906 (1157)
5 KOG0383 Predicted helicase [Ge 100.0 3E-100 7E-105 892.4 20.9 622 46-690 42-696 (696)
6 KOG0389 SNF2 family DNA-depend 100.0 6.5E-97 1E-101 842.2 42.8 464 274-761 387-913 (941)
7 KOG0391 SNF2 family DNA-depend 100.0 3.3E-95 7E-100 842.3 37.9 479 274-776 604-1429(1958)
8 KOG0388 SNF2 family DNA-depend 100.0 1.4E-94 3E-99 807.2 33.8 457 274-759 557-1177(1185)
9 KOG0387 Transcription-coupled 100.0 1.8E-92 3.8E-97 807.4 42.8 486 276-780 197-703 (923)
10 KOG0392 SNF2 family DNA-depend 100.0 1.4E-85 3E-90 773.2 39.6 465 284-775 974-1495(1549)
11 KOG0390 DNA repair protein, SN 100.0 1.4E-73 3.1E-78 673.1 42.9 453 284-760 237-731 (776)
12 KOG1015 Transcription regulato 100.0 9.5E-69 2.1E-73 613.7 34.2 471 284-779 667-1321(1567)
13 KOG1002 Nucleotide excision re 100.0 1.3E-66 2.9E-71 564.8 35.1 467 274-774 174-789 (791)
14 KOG4439 RNA polymerase II tran 100.0 2.4E-66 5.2E-71 584.4 34.3 470 276-774 317-899 (901)
15 COG0553 HepA Superfamily II DN 100.0 1E-65 2.2E-70 656.9 39.7 473 281-775 334-864 (866)
16 KOG1000 Chromatin remodeling p 100.0 5.9E-57 1.3E-61 491.2 31.5 409 285-756 198-623 (689)
17 KOG1016 Predicted DNA helicase 100.0 8.7E-57 1.9E-61 506.5 26.0 484 284-778 253-892 (1387)
18 PRK04914 ATP-dependent helicas 100.0 3.2E-54 6.9E-59 531.4 33.8 416 284-759 151-628 (956)
19 KOG1001 Helicase-like transcri 100.0 3.3E-49 7.1E-54 470.9 24.3 437 288-758 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 6.2E-42 1.4E-46 382.8 23.5 272 289-586 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 2.8E-38 6E-43 378.0 34.3 342 283-747 253-618 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 3.5E-34 7.7E-39 360.4 38.6 429 284-752 14-495 (773)
23 KOG0298 DEAD box-containing he 100.0 1.4E-31 3E-36 320.9 24.3 256 302-584 372-689 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 4.1E-30 8.8E-35 285.8 31.3 420 284-753 14-498 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 1.6E-28 3.4E-33 287.3 31.5 362 283-748 34-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 4.8E-28 1E-32 288.7 31.9 338 283-737 112-456 (501)
27 PTZ00110 helicase; Provisional 99.9 8.1E-24 1.7E-28 254.3 30.1 318 285-736 152-484 (545)
28 KOG0354 DEAD-box like helicase 99.9 1.3E-22 2.8E-27 238.8 36.2 421 284-751 61-545 (746)
29 PRK11776 ATP-dependent RNA hel 99.9 8.4E-23 1.8E-27 242.4 32.1 313 285-736 26-349 (460)
30 TIGR00614 recQ_fam ATP-depende 99.9 3.5E-23 7.7E-28 245.6 28.4 308 284-730 10-329 (470)
31 PRK10590 ATP-dependent RNA hel 99.9 3.7E-23 8E-28 244.6 28.1 308 285-728 23-346 (456)
32 PLN00206 DEAD-box ATP-dependen 99.9 3.6E-23 7.8E-28 247.9 28.3 313 285-736 143-475 (518)
33 PRK01297 ATP-dependent RNA hel 99.9 4.6E-23 1E-27 245.4 29.0 315 285-736 109-442 (475)
34 PRK11192 ATP-dependent RNA hel 99.9 1.3E-22 2.8E-27 239.2 29.8 312 284-729 22-347 (434)
35 PRK04837 ATP-dependent RNA hel 99.9 5.7E-23 1.2E-27 241.2 25.7 313 285-735 30-361 (423)
36 PRK11634 ATP-dependent RNA hel 99.9 5.8E-22 1.3E-26 240.5 31.8 309 284-728 27-346 (629)
37 PRK04537 ATP-dependent RNA hel 99.9 2.9E-22 6.3E-27 241.7 28.7 311 285-734 31-362 (572)
38 TIGR01389 recQ ATP-dependent D 99.9 8.7E-22 1.9E-26 240.4 29.0 304 284-728 12-325 (591)
39 PRK11057 ATP-dependent DNA hel 99.9 1.1E-21 2.4E-26 239.0 29.3 304 284-728 24-337 (607)
40 KOG0331 ATP-dependent RNA heli 99.9 1.5E-21 3.2E-26 223.9 27.6 311 285-728 113-442 (519)
41 KOG1123 RNA polymerase II tran 99.9 1.5E-22 3.3E-27 222.4 18.6 339 282-742 299-659 (776)
42 PTZ00424 helicase 45; Provisio 99.9 2.1E-21 4.6E-26 226.7 27.5 315 285-736 50-374 (401)
43 KOG0330 ATP-dependent RNA heli 99.9 2E-21 4.4E-26 209.1 21.3 322 285-746 83-415 (476)
44 PLN03137 ATP-dependent DNA hel 99.9 7E-21 1.5E-25 233.8 27.4 308 284-731 459-784 (1195)
45 TIGR00643 recG ATP-dependent D 99.9 2.4E-20 5.1E-25 228.3 31.9 305 284-728 234-560 (630)
46 PRK13767 ATP-dependent helicas 99.9 2E-20 4.3E-25 235.8 31.3 322 284-731 31-395 (876)
47 TIGR03817 DECH_helic helicase/ 99.9 2.2E-20 4.7E-25 231.0 30.8 330 285-744 36-394 (742)
48 PRK10917 ATP-dependent DNA hel 99.9 2.7E-20 5.8E-25 229.3 29.5 304 284-727 260-582 (681)
49 TIGR00580 mfd transcription-re 99.9 2.4E-20 5.3E-25 232.7 29.2 307 284-735 450-769 (926)
50 PRK11448 hsdR type I restricti 99.9 2.9E-20 6.3E-25 235.9 30.3 356 284-733 412-815 (1123)
51 PF06461 DUF1086: Domain of Un 99.9 9E-22 1.9E-26 185.7 7.7 78 937-1015 10-87 (145)
52 PRK10689 transcription-repair 99.8 1.1E-19 2.4E-24 231.4 28.6 305 284-727 599-912 (1147)
53 COG0513 SrmB Superfamily II DN 99.8 3.7E-19 8.1E-24 212.1 28.1 329 284-749 50-392 (513)
54 TIGR01587 cas3_core CRISPR-ass 99.8 3.1E-18 6.7E-23 197.0 25.4 328 307-750 2-355 (358)
55 PRK02362 ski2-like helicase; P 99.8 1.3E-18 2.8E-23 217.3 24.0 316 285-735 23-396 (737)
56 PRK00254 ski2-like helicase; P 99.8 1.7E-17 3.7E-22 206.8 30.8 317 284-737 22-389 (720)
57 COG1201 Lhr Lhr-like helicases 99.8 9.9E-18 2.1E-22 202.7 26.9 322 284-742 21-366 (814)
58 PRK01172 ski2-like helicase; P 99.8 3.6E-18 7.9E-23 211.8 23.9 304 284-728 21-370 (674)
59 TIGR02621 cas3_GSU0051 CRISPR- 99.8 9.5E-18 2.1E-22 203.9 23.9 107 621-732 269-390 (844)
60 TIGR03714 secA2 accessory Sec 99.8 2.7E-17 5.8E-22 198.2 27.0 116 606-727 406-530 (762)
61 KOG0328 Predicted ATP-dependen 99.8 9.1E-18 2E-22 173.8 18.7 313 286-736 50-373 (400)
62 KOG0350 DEAD-box ATP-dependent 99.8 5.3E-18 1.2E-22 187.8 17.9 356 285-735 159-539 (620)
63 TIGR00348 hsdR type I site-spe 99.8 5.7E-17 1.2E-21 199.1 28.8 360 285-734 238-649 (667)
64 PRK09200 preprotein translocas 99.7 1.9E-16 4.2E-21 192.6 27.2 129 606-744 410-546 (790)
65 TIGR00963 secA preprotein tran 99.7 3.8E-17 8.3E-22 195.6 19.3 118 606-728 387-511 (745)
66 KOG0345 ATP-dependent RNA heli 99.7 2.8E-16 6E-21 173.4 24.2 311 284-730 27-360 (567)
67 PHA02653 RNA helicase NPH-II; 99.7 3.2E-16 6.9E-21 189.8 26.9 323 283-738 158-516 (675)
68 PRK12898 secA preprotein trans 99.7 1.4E-15 3E-20 181.6 30.0 130 606-745 455-592 (656)
69 PRK09751 putative ATP-dependen 99.7 2.9E-16 6.2E-21 201.4 22.9 96 623-721 243-371 (1490)
70 COG0514 RecQ Superfamily II DN 99.7 8.4E-16 1.8E-20 180.0 24.5 304 284-729 16-332 (590)
71 KOG0335 ATP-dependent RNA heli 99.7 2.4E-16 5.2E-21 178.2 19.1 310 285-731 96-441 (482)
72 KOG0342 ATP-dependent RNA heli 99.7 3.2E-16 6.9E-21 174.2 17.4 307 285-726 104-429 (543)
73 TIGR03158 cas3_cyano CRISPR-as 99.7 3.8E-15 8.1E-20 170.6 26.2 85 623-719 271-357 (357)
74 KOG0333 U5 snRNP-like RNA heli 99.7 9.9E-16 2.1E-20 170.7 20.3 338 285-735 267-623 (673)
75 KOG0340 ATP-dependent RNA heli 99.7 4.5E-15 9.7E-20 158.8 23.6 317 285-738 29-363 (442)
76 PRK09401 reverse gyrase; Revie 99.7 5.8E-15 1.2E-19 189.1 28.7 292 283-721 78-431 (1176)
77 KOG0343 RNA Helicase [RNA proc 99.7 8E-15 1.7E-19 164.2 25.0 325 285-750 91-435 (758)
78 COG1200 RecG RecG-like helicas 99.7 6.1E-15 1.3E-19 172.2 25.1 302 284-726 261-583 (677)
79 COG1205 Distinct helicase fami 99.7 4.8E-15 1E-19 184.4 25.1 329 285-744 70-430 (851)
80 PRK05580 primosome assembly pr 99.7 2.7E-14 5.8E-19 175.7 31.1 153 284-466 143-304 (679)
81 COG4096 HsdR Type I site-speci 99.7 1.8E-15 3.9E-20 178.3 18.5 352 282-733 162-545 (875)
82 KOG0341 DEAD-box protein abstr 99.7 2.8E-16 6.1E-21 168.7 10.4 339 266-743 167-535 (610)
83 cd00079 HELICc Helicase superf 99.7 4.3E-16 9.3E-21 151.6 10.5 120 608-730 12-131 (131)
84 KOG0348 ATP-dependent RNA heli 99.6 2.1E-14 4.6E-19 160.4 24.3 121 606-729 403-549 (708)
85 COG4889 Predicted helicase [Ge 99.6 4.9E-15 1.1E-19 172.2 19.4 402 283-733 159-585 (1518)
86 KOG4284 DEAD box protein [Tran 99.6 5.5E-15 1.2E-19 167.6 18.5 310 286-725 48-370 (980)
87 COG1204 Superfamily II helicas 99.6 1.7E-14 3.8E-19 177.1 24.1 310 285-725 31-397 (766)
88 KOG0339 ATP-dependent RNA heli 99.6 1.3E-14 2.9E-19 160.8 20.6 319 285-739 245-578 (731)
89 PF04851 ResIII: Type III rest 99.6 1.8E-15 3.9E-20 156.2 12.6 164 285-467 3-183 (184)
90 KOG0338 ATP-dependent RNA heli 99.6 1.6E-14 3.5E-19 160.5 20.5 323 285-745 203-540 (691)
91 TIGR00595 priA primosomal prot 99.6 5.2E-14 1.1E-18 167.3 26.1 92 637-731 271-378 (505)
92 PRK13104 secA preprotein trans 99.6 7.1E-14 1.5E-18 169.9 26.8 120 606-730 426-583 (896)
93 KOG0336 ATP-dependent RNA heli 99.6 1.4E-14 2.9E-19 156.9 17.0 316 285-736 242-572 (629)
94 COG4098 comFA Superfamily II D 99.6 7.7E-13 1.7E-17 141.4 28.8 315 282-737 94-417 (441)
95 TIGR01054 rgy reverse gyrase. 99.6 1.3E-13 2.8E-18 177.0 26.7 279 284-705 77-408 (1171)
96 TIGR01970 DEAH_box_HrpB ATP-de 99.6 1.1E-13 2.4E-18 171.7 25.3 109 623-737 208-337 (819)
97 PRK12906 secA preprotein trans 99.6 1.9E-13 4.1E-18 165.5 24.0 118 606-728 422-547 (796)
98 KOG0326 ATP-dependent RNA heli 99.6 6.8E-15 1.5E-19 155.0 9.7 308 286-734 108-427 (459)
99 KOG0332 ATP-dependent RNA heli 99.6 9.6E-14 2.1E-18 149.5 18.4 336 267-738 88-446 (477)
100 PRK14701 reverse gyrase; Provi 99.6 2.2E-13 4.8E-18 178.2 25.3 101 613-724 322-446 (1638)
101 PRK09694 helicase Cas3; Provis 99.6 3.2E-13 7E-18 167.6 25.2 351 283-724 284-665 (878)
102 PRK12904 preprotein translocas 99.6 5.1E-13 1.1E-17 162.5 26.1 120 606-730 412-569 (830)
103 COG1197 Mfd Transcription-repa 99.6 1E-12 2.2E-17 161.6 28.9 370 284-807 593-982 (1139)
104 KOG0347 RNA helicase [RNA proc 99.5 9.8E-14 2.1E-18 155.6 16.9 342 304-757 219-612 (731)
105 PRK13107 preprotein translocas 99.5 3.1E-13 6.7E-18 163.9 22.5 119 606-729 431-586 (908)
106 PRK11664 ATP-dependent RNA hel 99.5 4.3E-13 9.3E-18 166.9 23.3 111 623-739 211-342 (812)
107 COG1202 Superfamily II helicas 99.5 3.8E-13 8.1E-18 151.6 18.8 314 284-736 215-553 (830)
108 PF00271 Helicase_C: Helicase 99.5 2E-14 4.3E-19 127.2 5.9 78 642-722 1-78 (78)
109 TIGR00631 uvrb excinuclease AB 99.5 2.6E-11 5.7E-16 147.8 32.4 132 607-744 425-563 (655)
110 KOG0346 RNA helicase [RNA proc 99.5 6.1E-13 1.3E-17 146.0 16.2 120 607-730 252-406 (569)
111 KOG0334 RNA helicase [RNA proc 99.5 8.7E-13 1.9E-17 159.3 18.7 123 607-735 597-719 (997)
112 smart00487 DEXDc DEAD-like hel 99.5 8.4E-13 1.8E-17 137.1 15.5 155 283-467 6-171 (201)
113 KOG0344 ATP-dependent RNA heli 99.4 1.5E-12 3.4E-17 148.5 16.9 316 286-735 159-494 (593)
114 KOG0952 DNA/RNA helicase MER3/ 99.4 6.5E-12 1.4E-16 150.5 21.9 319 286-739 111-494 (1230)
115 cd00046 DEXDc DEAD-like helica 99.4 1.5E-12 3.2E-17 127.2 13.1 136 305-466 1-144 (144)
116 PRK12900 secA preprotein trans 99.4 2.5E-11 5.5E-16 148.0 25.3 117 606-727 580-704 (1025)
117 PRK05298 excinuclease ABC subu 99.4 2.4E-10 5.3E-15 140.4 33.2 123 607-735 429-556 (652)
118 PF11496 HDA2-3: Class II hist 99.4 5.9E-12 1.3E-16 138.8 17.0 217 532-749 4-258 (297)
119 KOG0327 Translation initiation 99.4 6.2E-12 1.3E-16 137.1 15.2 312 285-736 48-370 (397)
120 smart00490 HELICc helicase sup 99.4 1.1E-12 2.4E-17 116.4 7.6 81 639-722 2-82 (82)
121 TIGR01967 DEAH_box_HrpA ATP-de 99.4 3.3E-11 7.1E-16 153.4 23.0 110 623-740 278-408 (1283)
122 PRK12899 secA preprotein trans 99.4 2.3E-10 5E-15 139.4 28.4 119 606-729 550-676 (970)
123 COG1203 CRISPR-associated heli 99.3 5E-11 1.1E-15 148.4 22.9 356 284-752 194-568 (733)
124 KOG0351 ATP-dependent DNA heli 99.3 1.3E-11 2.8E-16 153.1 17.4 313 284-733 263-591 (941)
125 PRK11131 ATP-dependent RNA hel 99.3 8.1E-11 1.8E-15 149.4 24.0 109 623-739 285-414 (1294)
126 PRK12326 preprotein translocas 99.3 2.5E-10 5.5E-15 135.9 26.1 130 606-745 409-553 (764)
127 KOG0337 ATP-dependent RNA heli 99.3 2.2E-11 4.8E-16 133.4 12.7 311 285-736 43-368 (529)
128 PF06465 DUF1087: Domain of Un 99.2 9.1E-12 2E-16 102.6 5.7 44 862-905 20-63 (66)
129 cd00268 DEADc DEAD-box helicas 99.2 1.5E-10 3.2E-15 122.1 15.4 153 285-467 21-185 (203)
130 PRK13103 secA preprotein trans 99.2 8E-10 1.7E-14 134.7 23.4 120 606-730 431-587 (913)
131 PF00270 DEAD: DEAD/DEAH box h 99.2 8E-11 1.7E-15 120.0 12.3 155 288-472 2-167 (169)
132 KOG0951 RNA helicase BRR2, DEA 99.2 1E-09 2.2E-14 133.4 19.7 72 648-723 607-689 (1674)
133 COG0556 UvrB Helicase subunit 99.1 4.8E-08 1E-12 110.8 29.3 131 613-747 432-570 (663)
134 PRK12903 secA preprotein trans 99.1 1.1E-08 2.3E-13 123.8 25.8 120 606-730 408-535 (925)
135 KOG0353 ATP-dependent DNA heli 99.1 1.5E-09 3.3E-14 116.8 16.6 300 284-717 93-407 (695)
136 TIGR01407 dinG_rel DnaQ family 99.1 1.2E-09 2.6E-14 138.9 18.0 86 282-368 242-333 (850)
137 KOG0352 ATP-dependent DNA heli 99.1 8.6E-09 1.9E-13 113.2 20.0 319 288-731 23-359 (641)
138 PF13872 AAA_34: P-loop contai 99.0 4.1E-09 8.8E-14 114.3 13.3 238 276-550 27-302 (303)
139 CHL00122 secA preprotein trans 98.9 8.5E-08 1.8E-12 116.9 21.6 85 606-694 406-491 (870)
140 COG1110 Reverse gyrase [DNA re 98.9 3E-07 6.6E-12 111.4 24.1 126 285-440 82-215 (1187)
141 COG1198 PriA Primosomal protei 98.8 4.4E-07 9.6E-12 110.4 24.1 371 284-734 197-603 (730)
142 TIGR00596 rad1 DNA repair prot 98.8 1.4E-07 3E-12 116.9 20.0 150 605-757 267-537 (814)
143 PRK12902 secA preprotein trans 98.8 3.5E-07 7.7E-12 111.4 22.8 85 606-694 421-506 (939)
144 KOG0947 Cytoplasmic exosomal R 98.8 4.1E-08 8.9E-13 117.2 14.2 145 280-466 292-444 (1248)
145 PRK12901 secA preprotein trans 98.8 7.8E-07 1.7E-11 109.5 24.0 120 606-730 610-737 (1112)
146 KOG1244 Predicted transcriptio 98.8 1.9E-09 4.1E-14 111.2 0.9 50 50-99 280-332 (336)
147 PF00385 Chromo: Chromo (CHRro 98.7 2.7E-09 5.9E-14 87.6 1.2 49 193-241 2-54 (55)
148 COG0610 Type I site-specific r 98.7 1.6E-07 3.4E-12 119.7 17.4 139 303-470 272-417 (962)
149 COG4581 Superfamily II RNA hel 98.7 1.3E-07 2.8E-12 117.5 15.9 157 282-498 116-282 (1041)
150 TIGR00604 rad3 DNA repair heli 98.6 2.2E-06 4.8E-11 107.2 23.4 71 284-354 9-82 (705)
151 PRK07246 bifunctional ATP-depe 98.6 8.6E-06 1.9E-10 102.8 28.2 89 612-706 635-725 (820)
152 KOG1513 Nuclear helicase MOP-3 98.6 5.9E-06 1.3E-10 97.1 24.2 242 276-553 256-539 (1300)
153 KOG4299 PHD Zn-finger protein 98.6 1.2E-08 2.5E-13 117.9 1.5 49 51-99 253-306 (613)
154 KOG0329 ATP-dependent RNA heli 98.6 1E-06 2.2E-11 91.2 15.1 45 681-725 302-346 (387)
155 PRK08074 bifunctional ATP-depe 98.6 1E-05 2.3E-10 103.8 27.6 90 280-369 252-347 (928)
156 KOG0949 Predicted helicase, DE 98.5 1.3E-05 2.9E-10 96.6 24.6 161 286-479 512-682 (1330)
157 COG1199 DinG Rad3-related DNA 98.5 1E-05 2.2E-10 100.9 24.8 104 620-728 475-611 (654)
158 TIGR03117 cas_csf4 CRISPR-asso 98.5 4E-05 8.6E-10 93.0 26.6 78 290-367 2-86 (636)
159 PF02399 Herpes_ori_bp: Origin 98.4 1E-05 2.2E-10 98.1 20.1 113 607-730 266-384 (824)
160 PRK15483 type III restriction- 98.4 2.5E-06 5.4E-11 106.0 15.2 142 305-466 60-238 (986)
161 KOG0948 Nuclear exosomal RNA h 98.3 1.5E-06 3.2E-11 102.0 10.1 139 284-465 128-275 (1041)
162 KOG0920 ATP-dependent RNA heli 98.3 2.9E-05 6.4E-10 96.0 21.8 128 608-741 395-549 (924)
163 cd00024 CHROMO Chromatin organ 98.3 2.1E-07 4.6E-12 76.2 2.0 48 194-241 5-54 (55)
164 PRK11747 dinG ATP-dependent DN 98.2 0.00017 3.7E-09 89.9 25.7 91 612-706 522-616 (697)
165 TIGR02562 cas3_yersinia CRISPR 98.2 0.00093 2E-08 83.6 30.9 188 287-474 410-642 (1110)
166 KOG0825 PHD Zn-finger protein 98.2 6.9E-07 1.5E-11 104.1 2.5 48 51-98 215-266 (1134)
167 KOG0922 DEAH-box RNA helicase 98.2 0.00024 5.1E-09 83.9 23.0 109 626-739 260-393 (674)
168 PF07652 Flavi_DEAD: Flaviviru 98.2 8.3E-06 1.8E-10 79.4 9.2 130 302-466 2-136 (148)
169 PF00628 PHD: PHD-finger; Int 98.2 6.7E-07 1.4E-11 72.2 1.2 44 53-96 1-49 (51)
170 COG0653 SecA Preprotein transl 98.1 0.00041 8.9E-09 85.0 24.4 121 606-732 411-542 (822)
171 smart00298 CHROMO Chromatin or 98.1 1.2E-06 2.6E-11 71.7 1.5 48 194-241 4-52 (55)
172 smart00489 DEXDc3 DEAD-like he 98.1 2.3E-05 5E-10 87.3 11.7 72 284-355 7-84 (289)
173 smart00488 DEXDc2 DEAD-like he 98.1 2.3E-05 5E-10 87.3 11.7 72 284-355 7-84 (289)
174 KOG0950 DNA polymerase theta/e 98.0 0.00016 3.5E-09 88.0 18.3 168 285-486 223-406 (1008)
175 PF13871 Helicase_C_4: Helicas 98.0 9.3E-06 2E-10 88.3 7.1 90 665-757 52-149 (278)
176 KOG0924 mRNA splicing factor A 98.0 0.00013 2.7E-09 85.3 16.3 94 648-744 597-705 (1042)
177 KOG0349 Putative DEAD-box RNA 98.0 2.1E-05 4.5E-10 87.1 8.5 95 624-721 505-602 (725)
178 COG5034 TNG2 Chromatin remodel 97.9 4.8E-06 1E-10 86.4 2.9 48 47-97 217-269 (271)
179 smart00249 PHD PHD zinc finger 97.9 8.3E-06 1.8E-10 64.1 3.1 43 53-95 1-47 (47)
180 COG1643 HrpA HrpA-like helicas 97.9 0.00042 9E-09 86.3 18.8 113 624-739 259-390 (845)
181 cd04718 BAH_plant_2 BAH, or Br 97.8 1E-05 2.2E-10 78.7 2.5 28 72-99 1-28 (148)
182 PF00385 Chromo: Chromo (CHRro 97.8 2.9E-06 6.4E-11 69.6 -1.6 38 130-173 18-55 (55)
183 PF13086 AAA_11: AAA domain; P 97.7 0.00019 4E-09 76.9 11.3 66 285-354 1-75 (236)
184 KOG0957 PHD finger protein [Ge 97.7 1.4E-05 3.1E-10 89.2 1.3 47 50-96 543-596 (707)
185 cd00024 CHROMO Chromatin organ 97.6 1.6E-05 3.5E-10 65.0 1.1 51 101-172 4-54 (55)
186 KOG1512 PHD Zn-finger protein 97.6 2.8E-05 6.1E-10 81.3 1.9 42 50-93 313-357 (381)
187 KOG0953 Mitochondrial RNA heli 97.6 0.00023 5E-09 81.9 9.1 99 622-724 356-464 (700)
188 KOG0923 mRNA splicing factor A 97.5 0.003 6.6E-08 74.2 17.2 85 649-741 507-611 (902)
189 KOG1973 Chromatin remodeling p 97.5 4E-05 8.6E-10 84.3 1.8 47 49-97 217-267 (274)
190 KOG0925 mRNA splicing factor A 97.4 0.0045 9.7E-08 70.4 16.5 62 679-742 315-393 (699)
191 PF07517 SecA_DEAD: SecA DEAD- 97.3 0.0024 5.1E-08 69.8 13.3 122 283-440 75-209 (266)
192 KOG0926 DEAH-box RNA helicase 97.3 0.00051 1.1E-08 81.8 7.2 66 667-735 620-703 (1172)
193 COG3587 Restriction endonuclea 97.1 0.002 4.2E-08 78.0 9.6 44 679-722 485-528 (985)
194 KOG4150 Predicted ATP-dependen 97.1 0.0025 5.4E-08 73.3 9.9 133 606-743 507-647 (1034)
195 KOG2748 Uncharacterized conser 97.0 0.00011 2.4E-09 79.6 -0.9 36 130-173 25-60 (369)
196 KOG1473 Nucleosome remodeling 97.0 0.00036 7.8E-09 85.4 3.3 47 51-97 344-390 (1414)
197 smart00298 CHROMO Chromatin or 97.0 0.00029 6.2E-09 57.5 1.6 37 130-173 17-53 (55)
198 KOG0955 PHD finger protein BR1 97.0 0.00048 1E-08 86.6 4.1 62 49-115 217-283 (1051)
199 KOG4443 Putative transcription 96.9 0.00039 8.4E-09 81.4 2.2 48 49-96 66-116 (694)
200 PRK10536 hypothetical protein; 96.9 0.011 2.4E-07 63.9 12.6 150 286-470 60-216 (262)
201 COG5141 PHD zinc finger-contai 96.9 0.00045 9.9E-09 77.5 2.2 65 47-116 189-258 (669)
202 PF02562 PhoH: PhoH-like prote 96.8 0.0087 1.9E-07 62.9 10.7 149 286-471 5-160 (205)
203 KOG1245 Chromatin remodeling c 96.8 0.0003 6.6E-09 91.9 -0.4 51 49-99 1106-1159(1404)
204 KOG0954 PHD finger protein [Ge 96.6 0.00088 1.9E-08 78.9 2.2 46 50-97 270-320 (893)
205 PF13307 Helicase_C_2: Helicas 96.5 0.0059 1.3E-07 62.4 7.0 81 621-706 6-92 (167)
206 KOG1911 Heterochromatin-associ 96.4 0.0028 6E-08 70.0 4.3 55 190-244 47-101 (270)
207 PF13401 AAA_22: AAA domain; P 96.4 0.0041 8.8E-08 60.3 4.6 35 430-466 89-125 (131)
208 KOG1802 RNA helicase nonsense 96.3 0.0054 1.2E-07 72.1 6.1 77 284-366 409-486 (935)
209 PF13604 AAA_30: AAA domain; P 96.3 0.038 8.3E-07 58.0 12.0 58 285-345 1-58 (196)
210 KOG4323 Polycomb-like PHD Zn-f 96.3 0.0013 2.9E-08 75.4 0.8 54 52-105 169-231 (464)
211 KOG1131 RNA polymerase II tran 96.3 0.0075 1.6E-07 69.1 6.6 65 277-341 8-74 (755)
212 PRK14873 primosome assembly pr 96.2 0.025 5.4E-07 69.9 11.1 126 313-466 169-303 (665)
213 PF09848 DUF2075: Uncharacteri 96.1 0.02 4.3E-07 65.9 9.6 45 307-351 4-49 (352)
214 TIGR00376 DNA helicase, putati 96.0 0.029 6.3E-07 69.4 10.3 75 284-364 156-231 (637)
215 KOG2748 Uncharacterized conser 95.9 0.0059 1.3E-07 66.6 3.7 49 193-242 12-60 (369)
216 COG0553 HepA Superfamily II DN 95.8 0.0037 8.1E-08 80.7 1.7 179 285-488 84-289 (866)
217 PF15446 zf-PHD-like: PHD/FYVE 95.4 0.015 3.2E-07 57.5 3.9 34 63-96 124-175 (175)
218 TIGR01448 recD_rel helicase, p 95.2 0.13 2.8E-06 64.8 12.1 65 283-351 321-386 (720)
219 KOG1803 DNA helicase [Replicat 95.1 0.036 7.8E-07 65.4 6.4 64 284-351 184-248 (649)
220 KOG0951 RNA helicase BRR2, DEA 95.1 0.056 1.2E-06 68.2 8.1 142 269-445 1104-1270(1674)
221 PF13831 PHD_2: PHD-finger; PD 95.0 0.0057 1.2E-07 45.3 -0.3 34 61-96 2-36 (36)
222 KOG0956 PHD finger protein AF1 95.0 0.01 2.2E-07 69.6 1.6 84 53-154 7-98 (900)
223 cd00009 AAA The AAA+ (ATPases 95.0 0.2 4.4E-06 48.4 10.7 41 304-345 19-59 (151)
224 PLN03025 replication factor C 94.8 0.3 6.5E-06 55.4 12.9 27 305-331 35-61 (319)
225 PRK07003 DNA polymerase III su 94.7 0.9 2E-05 56.3 17.1 42 290-331 21-65 (830)
226 PRK09112 DNA polymerase III su 94.6 0.2 4.3E-06 57.5 10.8 42 290-331 28-72 (351)
227 PRK04296 thymidine kinase; Pro 94.5 0.1 2.2E-06 54.6 7.4 34 307-341 5-38 (190)
228 TIGR01447 recD exodeoxyribonuc 94.3 0.29 6.2E-06 60.0 11.9 54 288-345 148-205 (586)
229 PRK14956 DNA polymerase III su 94.3 0.19 4.1E-06 59.4 9.8 42 290-331 23-67 (484)
230 PF12340 DUF3638: Protein of u 94.3 0.087 1.9E-06 56.0 6.4 73 282-355 20-92 (229)
231 PRK12402 replication factor C 93.7 0.36 7.8E-06 55.0 10.5 40 293-332 23-64 (337)
232 PRK10875 recD exonuclease V su 93.3 0.26 5.6E-06 60.6 8.9 57 286-346 153-212 (615)
233 PRK07764 DNA polymerase III su 93.3 3.4 7.3E-05 52.7 19.0 26 306-331 39-64 (824)
234 COG3421 Uncharacterized protei 93.3 0.25 5.4E-06 58.3 8.2 38 310-347 3-41 (812)
235 PRK12323 DNA polymerase III su 93.3 0.64 1.4E-05 56.7 11.9 27 305-331 39-65 (700)
236 KOG1132 Helicase of the DEAD s 93.1 0.34 7.4E-06 59.7 9.3 89 626-715 563-665 (945)
237 TIGR02881 spore_V_K stage V sp 93.1 0.22 4.7E-06 54.8 7.2 26 305-330 43-68 (261)
238 KOG1133 Helicase of the DEAD s 93.1 4.6 9.9E-05 49.0 18.1 81 626-707 631-721 (821)
239 PRK06526 transposase; Provisio 93.1 0.29 6.3E-06 53.5 8.0 54 291-353 89-142 (254)
240 PRK12723 flagellar biosynthesi 93.0 0.89 1.9E-05 52.8 12.2 132 304-484 174-315 (388)
241 KOG0383 Predicted helicase [Ge 92.7 0.044 9.4E-07 66.9 1.1 71 50-152 176-246 (696)
242 smart00382 AAA ATPases associa 92.5 0.39 8.5E-06 45.9 7.4 44 304-348 2-45 (148)
243 PRK05707 DNA polymerase III su 92.3 0.71 1.5E-05 52.5 10.1 48 285-332 3-50 (328)
244 COG1875 NYN ribonuclease and A 92.2 0.46 9.9E-06 53.3 8.1 70 274-345 216-288 (436)
245 smart00492 HELICc3 helicase su 92.2 0.63 1.4E-05 46.1 8.4 46 659-706 32-79 (141)
246 PRK07940 DNA polymerase III su 92.2 0.69 1.5E-05 53.9 10.1 27 305-331 37-63 (394)
247 PRK07994 DNA polymerase III su 92.2 0.68 1.5E-05 57.0 10.4 42 290-331 21-65 (647)
248 PRK14960 DNA polymerase III su 91.9 1.5 3.3E-05 53.6 12.7 37 294-330 24-63 (702)
249 PRK14958 DNA polymerase III su 91.8 1.4 3E-05 53.2 12.3 42 290-331 21-65 (509)
250 PF13177 DNA_pol3_delta2: DNA 91.5 1.4 3.1E-05 44.7 10.3 45 290-334 2-49 (162)
251 PRK06645 DNA polymerase III su 91.3 1 2.2E-05 54.1 10.5 42 290-331 26-70 (507)
252 smart00491 HELICc2 helicase su 91.3 0.69 1.5E-05 45.9 7.5 54 652-706 23-80 (142)
253 PRK05703 flhF flagellar biosyn 91.3 2.3 4.9E-05 50.2 13.1 56 428-483 299-359 (424)
254 PF06862 DUF1253: Protein of u 91.2 2.3 5E-05 49.9 12.7 126 608-735 281-414 (442)
255 PRK14961 DNA polymerase III su 91.1 1.4 3E-05 51.0 11.1 42 289-330 20-64 (363)
256 PRK08181 transposase; Validate 91.0 1.5 3.3E-05 48.3 10.7 47 286-332 88-134 (269)
257 PRK09111 DNA polymerase III su 91.0 1.3 2.8E-05 54.5 10.9 42 290-331 29-73 (598)
258 PRK00440 rfc replication facto 90.9 2.8 6E-05 47.2 13.2 27 305-331 39-65 (319)
259 KOG4299 PHD Zn-finger protein 90.8 0.12 2.7E-06 61.0 2.1 47 51-97 47-94 (613)
260 PRK14949 DNA polymerase III su 90.8 0.6 1.3E-05 58.9 8.0 42 290-331 21-65 (944)
261 TIGR03015 pepcterm_ATPase puta 90.7 1.4 3.1E-05 48.3 10.3 42 288-329 26-68 (269)
262 TIGR03420 DnaA_homol_Hda DnaA 90.6 1.4 2.9E-05 47.1 9.7 30 302-331 36-65 (226)
263 PRK14957 DNA polymerase III su 90.3 1.8 3.9E-05 52.5 11.3 39 292-330 23-64 (546)
264 TIGR02880 cbbX_cfxQ probable R 90.3 0.45 9.8E-06 53.0 5.9 37 304-340 58-97 (284)
265 PRK08084 DNA replication initi 90.1 2.1 4.6E-05 46.2 10.7 29 303-331 44-72 (235)
266 CHL00181 cbbX CbbX; Provisiona 90.0 0.53 1.2E-05 52.5 6.0 28 304-331 59-86 (287)
267 PRK08691 DNA polymerase III su 90.0 5.1 0.00011 49.7 14.7 41 291-331 22-65 (709)
268 PRK14964 DNA polymerase III su 89.9 2.6 5.6E-05 50.5 12.0 40 292-331 20-62 (491)
269 PRK08451 DNA polymerase III su 89.7 1.9 4.2E-05 52.0 10.8 41 291-331 20-63 (535)
270 PRK14952 DNA polymerase III su 89.7 2.2 4.8E-05 52.2 11.4 42 290-331 18-62 (584)
271 PRK14962 DNA polymerase III su 89.7 2 4.3E-05 51.4 10.9 26 306-331 38-63 (472)
272 PRK08058 DNA polymerase III su 89.7 1.5 3.2E-05 50.1 9.5 135 289-465 10-148 (329)
273 PRK06871 DNA polymerase III su 89.3 2.5 5.3E-05 48.0 10.8 47 286-332 3-52 (325)
274 PRK07471 DNA polymerase III su 89.3 2.8 6.1E-05 48.4 11.5 43 290-332 24-69 (365)
275 PRK11889 flhF flagellar biosyn 89.2 3.2 6.9E-05 48.0 11.4 36 305-341 242-277 (436)
276 PRK14951 DNA polymerase III su 89.2 1.7 3.6E-05 53.5 10.0 42 290-331 21-65 (618)
277 PRK08769 DNA polymerase III su 89.0 3.6 7.7E-05 46.6 11.7 48 285-332 4-54 (319)
278 PHA02533 17 large terminase pr 88.7 2.2 4.7E-05 51.8 10.4 55 284-342 58-113 (534)
279 PF05876 Terminase_GpA: Phage 88.7 0.46 1E-05 58.0 4.8 166 284-476 15-189 (557)
280 KOG4443 Putative transcription 88.6 0.16 3.5E-06 60.2 0.7 96 50-150 17-127 (694)
281 TIGR02928 orc1/cdc6 family rep 88.5 2 4.3E-05 49.6 9.7 45 286-330 19-66 (365)
282 PHA02544 44 clamp loader, smal 88.5 3.4 7.3E-05 46.7 11.4 39 429-467 101-141 (316)
283 PF05621 TniB: Bacterial TniB 88.2 3.3 7.1E-05 46.0 10.4 45 422-466 139-189 (302)
284 PRK14969 DNA polymerase III su 87.5 3.9 8.5E-05 49.7 11.6 41 290-330 21-64 (527)
285 PRK14974 cell division protein 87.4 3.5 7.5E-05 47.0 10.4 36 305-341 141-176 (336)
286 COG1200 RecG RecG-like helicas 87.3 7.3 0.00016 47.6 13.4 96 606-704 293-393 (677)
287 PRK08116 hypothetical protein; 87.3 4.2 9E-05 44.9 10.7 42 304-346 114-155 (268)
288 KOG1805 DNA replication helica 87.2 2.2 4.9E-05 53.4 9.1 161 285-468 669-831 (1100)
289 PF13173 AAA_14: AAA domain 87.1 3.9 8.5E-05 39.5 9.3 26 304-329 2-27 (128)
290 KOG0989 Replication factor C, 87.1 2.1 4.6E-05 47.2 8.0 43 289-331 40-84 (346)
291 PRK14955 DNA polymerase III su 87.1 5.2 0.00011 46.9 12.0 42 290-331 21-65 (397)
292 TIGR02768 TraA_Ti Ti-type conj 87.1 4 8.7E-05 51.8 11.8 59 283-345 350-408 (744)
293 PRK14950 DNA polymerase III su 86.9 3.8 8.3E-05 50.5 11.3 41 290-330 21-64 (585)
294 KOG0957 PHD finger protein [Ge 86.9 0.42 9.2E-06 54.6 2.7 50 50-99 118-180 (707)
295 PRK06090 DNA polymerase III su 86.7 5.2 0.00011 45.2 11.2 48 285-332 3-53 (319)
296 PF15446 zf-PHD-like: PHD/FYVE 86.7 0.32 7E-06 48.4 1.4 48 53-100 1-62 (175)
297 PRK14963 DNA polymerase III su 86.6 4.1 8.9E-05 49.2 11.0 42 290-331 19-63 (504)
298 PRK08727 hypothetical protein; 86.6 3.2 6.8E-05 44.8 9.2 28 305-332 42-69 (233)
299 PF13245 AAA_19: Part of AAA d 86.3 1.9 4E-05 37.9 5.9 44 304-347 10-56 (76)
300 PRK06964 DNA polymerase III su 86.3 4.4 9.6E-05 46.3 10.5 47 286-332 2-49 (342)
301 PRK14948 DNA polymerase III su 86.2 3.5 7.7E-05 51.0 10.4 42 290-331 21-65 (620)
302 PRK00149 dnaA chromosomal repl 86.2 4.5 9.7E-05 48.3 11.1 30 305-334 149-178 (450)
303 PRK05563 DNA polymerase III su 86.1 5.4 0.00012 48.9 11.9 26 306-331 40-65 (559)
304 PRK14953 DNA polymerase III su 86.1 4.6 0.0001 48.5 11.0 41 290-330 21-64 (486)
305 PRK07993 DNA polymerase III su 86.1 4.2 9E-05 46.5 10.2 48 285-332 2-52 (334)
306 COG0593 DnaA ATPase involved i 85.9 4.8 0.0001 46.8 10.6 41 428-468 175-221 (408)
307 PHA03368 DNA packaging termina 85.8 2 4.4E-05 52.3 7.6 129 303-465 253-389 (738)
308 TIGR00362 DnaA chromosomal rep 85.4 5.4 0.00012 46.9 11.0 34 306-339 138-172 (405)
309 PRK14959 DNA polymerase III su 85.3 4.4 9.5E-05 49.7 10.4 38 294-331 25-65 (624)
310 PHA03372 DNA packaging termina 85.3 1.9 4.2E-05 51.8 7.1 130 302-465 201-336 (668)
311 cd01121 Sms Sms (bacterial rad 84.5 4.8 0.0001 46.6 9.8 50 302-352 80-129 (372)
312 TIGR00595 priA primosomal prot 84.4 6.4 0.00014 47.6 11.3 95 605-703 6-101 (505)
313 PHA03333 putative ATPase subun 84.4 7.9 0.00017 47.6 11.7 59 288-347 172-231 (752)
314 PF00448 SRP54: SRP54-type pro 84.3 2.8 6E-05 44.0 7.1 48 307-356 4-52 (196)
315 PRK14087 dnaA chromosomal repl 83.8 4 8.7E-05 48.6 9.1 41 305-345 142-183 (450)
316 PF00249 Myb_DNA-binding: Myb- 83.8 1.4 3.1E-05 34.7 3.6 42 968-1011 3-45 (48)
317 PRK08903 DnaA regulatory inact 83.7 6.1 0.00013 42.3 9.7 30 302-331 40-69 (227)
318 PRK05896 DNA polymerase III su 83.6 10 0.00023 46.3 12.5 41 292-332 23-66 (605)
319 PRK06647 DNA polymerase III su 83.6 5.3 0.00011 48.9 10.1 26 306-331 40-65 (563)
320 PRK07133 DNA polymerase III su 83.5 5.6 0.00012 49.7 10.3 42 290-331 23-67 (725)
321 COG2256 MGS1 ATPase related to 83.2 4.3 9.3E-05 46.5 8.3 25 303-327 47-71 (436)
322 PF00580 UvrD-helicase: UvrD/R 83.1 2.5 5.4E-05 47.2 6.8 54 286-345 1-57 (315)
323 PRK13889 conjugal transfer rel 83.0 6.8 0.00015 50.8 11.2 59 283-345 344-402 (988)
324 PRK04132 replication factor C 83.0 4.2 9.1E-05 51.7 9.2 48 428-475 630-678 (846)
325 cd00167 SANT 'SWI3, ADA2, N-Co 82.9 2.3 5.1E-05 32.2 4.5 42 969-1012 2-43 (45)
326 PF06733 DEAD_2: DEAD_2; Inte 82.8 0.64 1.4E-05 47.7 1.6 38 405-442 118-159 (174)
327 TIGR00643 recG ATP-dependent D 82.5 11 0.00023 47.2 12.4 97 606-705 266-367 (630)
328 PRK05580 primosome assembly pr 82.4 8.8 0.00019 48.3 11.7 95 606-704 172-267 (679)
329 TIGR03345 VI_ClpV1 type VI sec 82.4 7.6 0.00016 50.0 11.3 41 290-330 192-234 (852)
330 TIGR00678 holB DNA polymerase 82.3 12 0.00026 38.6 11.0 27 305-331 15-41 (188)
331 PRK06893 DNA replication initi 82.1 8.4 0.00018 41.4 10.0 27 306-332 41-67 (229)
332 PF12861 zf-Apc11: Anaphase-pr 81.9 0.5 1.1E-05 42.0 0.4 43 54-98 35-80 (85)
333 PRK14722 flhF flagellar biosyn 81.6 15 0.00033 42.4 12.3 40 302-341 135-175 (374)
334 PRK00771 signal recognition pa 81.5 8 0.00017 45.8 10.2 37 305-341 96-132 (437)
335 PRK11054 helD DNA helicase IV; 81.4 6.4 0.00014 49.3 9.9 86 284-377 195-286 (684)
336 PRK14954 DNA polymerase III su 81.3 8.3 0.00018 47.7 10.7 42 290-331 21-65 (620)
337 PRK00411 cdc6 cell division co 81.1 11 0.00025 43.8 11.5 46 287-332 35-83 (394)
338 PRK14088 dnaA chromosomal repl 80.8 8.3 0.00018 45.8 10.2 36 305-340 131-167 (440)
339 COG1484 DnaC DNA replication p 80.7 5.3 0.00011 43.8 7.9 66 287-353 88-153 (254)
340 COG1198 PriA Primosomal protei 80.4 7.7 0.00017 48.5 9.9 111 536-687 195-306 (730)
341 PRK14965 DNA polymerase III su 80.3 20 0.00044 44.2 13.6 40 292-331 23-65 (576)
342 COG3267 ExeA Type II secretory 79.7 7.2 0.00016 42.1 8.1 51 302-354 48-105 (269)
343 PF01695 IstB_IS21: IstB-like 79.6 2.2 4.7E-05 44.1 4.3 38 302-340 45-82 (178)
344 smart00717 SANT SANT SWI3, AD 79.4 3.6 7.8E-05 31.7 4.6 44 968-1013 3-46 (49)
345 KOG1246 DNA-binding protein ju 79.3 1.3 2.9E-05 57.4 3.1 49 50-98 154-204 (904)
346 PRK04195 replication factor C 79.3 15 0.00034 44.1 12.0 42 286-328 18-63 (482)
347 PF14446 Prok-RING_1: Prokaryo 79.1 1.2 2.7E-05 36.0 1.6 30 51-80 5-38 (54)
348 PRK14086 dnaA chromosomal repl 78.9 10 0.00022 46.6 10.1 26 306-331 316-341 (617)
349 COG0470 HolB ATPase involved i 78.8 7.5 0.00016 43.7 8.7 30 303-332 22-52 (325)
350 PF00308 Bac_DnaA: Bacterial d 78.7 11 0.00024 40.2 9.5 37 428-464 97-137 (219)
351 PRK07399 DNA polymerase III su 78.5 10 0.00022 43.0 9.5 43 290-332 9-54 (314)
352 PRK05642 DNA replication initi 78.1 9.4 0.0002 41.2 8.8 36 430-465 99-138 (234)
353 PRK06305 DNA polymerase III su 77.9 13 0.00027 44.4 10.5 42 290-331 22-66 (451)
354 PRK13342 recombination factor 77.7 12 0.00026 44.2 10.2 25 304-328 36-60 (413)
355 PRK10865 protein disaggregatio 77.3 11 0.00023 48.8 10.3 37 294-330 187-225 (857)
356 KOG0952 DNA/RNA helicase MER3/ 77.0 3.2 6.9E-05 52.5 5.1 111 302-443 941-1061(1230)
357 KOG1512 PHD Zn-finger protein 76.8 0.7 1.5E-05 49.3 -0.4 46 51-96 258-315 (381)
358 PRK06731 flhF flagellar biosyn 76.7 20 0.00043 39.6 10.9 47 303-350 74-124 (270)
359 PRK12422 chromosomal replicati 75.9 9.2 0.0002 45.5 8.6 35 305-340 142-176 (445)
360 PRK10917 ATP-dependent DNA hel 75.4 15 0.00032 46.3 10.7 97 606-705 292-393 (681)
361 PF00004 AAA: ATPase family as 75.1 3.8 8.3E-05 39.1 4.4 35 307-345 1-35 (132)
362 COG1419 FlhF Flagellar GTP-bin 74.5 23 0.00051 41.0 10.9 71 412-485 267-342 (407)
363 KOG1911 Heterochromatin-associ 74.3 1.1 2.3E-05 49.6 0.2 22 131-152 64-85 (270)
364 PF05496 RuvB_N: Holliday junc 74.1 21 0.00045 38.2 9.7 24 305-328 51-74 (233)
365 KOG1473 Nucleosome remodeling 74.0 0.66 1.4E-05 58.2 -1.6 50 50-99 427-480 (1414)
366 PRK06835 DNA replication prote 73.9 7.8 0.00017 44.1 7.0 49 284-332 159-211 (329)
367 KOG3612 PHD Zn-finger protein 73.7 2.6 5.6E-05 49.4 3.1 50 49-98 58-108 (588)
368 PTZ00112 origin recognition co 73.3 27 0.00058 44.5 11.6 44 286-329 759-806 (1164)
369 PRK06646 DNA polymerase III su 73.2 6.9 0.00015 39.4 5.6 40 605-644 10-49 (154)
370 PRK05986 cob(I)alamin adenolsy 73.0 47 0.001 34.6 11.8 63 421-483 108-174 (191)
371 KOG0384 Chromodomain-helicase 72.6 1.2 2.6E-05 56.8 0.1 25 131-155 300-324 (1373)
372 TIGR03689 pup_AAA proteasome A 72.5 11 0.00024 45.4 8.2 29 302-330 214-242 (512)
373 PTZ00293 thymidine kinase; Pro 72.4 10 0.00022 40.2 6.9 36 307-343 7-42 (211)
374 PRK12727 flagellar biosynthesi 72.1 49 0.0011 40.1 13.1 39 302-340 348-387 (559)
375 KOG2543 Origin recognition com 72.1 65 0.0014 37.1 13.3 212 285-551 9-255 (438)
376 PRK11823 DNA repair protein Ra 71.7 12 0.00026 44.6 8.1 53 301-354 77-129 (446)
377 CHL00095 clpC Clp protease ATP 71.7 1.8E+02 0.0039 37.6 19.4 26 306-331 541-566 (821)
378 PRK08699 DNA polymerase III su 71.2 32 0.00069 39.2 11.1 46 286-331 2-48 (325)
379 cd00561 CobA_CobO_BtuR ATP:cor 71.1 31 0.00068 34.9 9.8 59 421-479 88-150 (159)
380 cd01124 KaiC KaiC is a circadi 70.8 11 0.00023 38.7 6.7 48 307-355 2-49 (187)
381 PRK07952 DNA replication prote 70.6 14 0.0003 40.2 7.7 62 288-354 79-144 (244)
382 KOG4628 Predicted E3 ubiquitin 70.5 2.8 6E-05 47.4 2.3 45 52-99 230-277 (348)
383 cd01120 RecA-like_NTPases RecA 70.1 25 0.00054 34.5 9.1 36 307-343 2-37 (165)
384 COG3973 Superfamily I DNA and 70.0 8.1 0.00018 46.4 6.0 61 286-351 213-278 (747)
385 TIGR02397 dnaX_nterm DNA polym 69.9 48 0.001 37.9 12.6 26 306-331 38-63 (355)
386 PRK13826 Dtr system oriT relax 69.3 32 0.00069 45.3 11.7 58 284-345 380-437 (1102)
387 TIGR03346 chaperone_ClpB ATP-d 69.0 18 0.00039 46.8 9.6 38 293-330 181-220 (852)
388 TIGR02639 ClpA ATP-dependent C 69.0 29 0.00064 44.1 11.3 29 303-331 202-230 (731)
389 TIGR00708 cobA cob(I)alamin ad 69.0 7.6 0.00016 39.8 4.9 63 421-483 90-156 (173)
390 PRK14971 DNA polymerase III su 68.6 69 0.0015 39.8 14.1 42 290-331 22-66 (614)
391 PRK13341 recombination factor 67.7 17 0.00037 45.9 8.6 25 304-328 52-76 (725)
392 TIGR00416 sms DNA repair prote 67.1 25 0.00054 42.0 9.5 52 302-354 92-143 (454)
393 COG2255 RuvB Holliday junction 67.1 6.7 0.00015 43.0 4.2 24 305-328 53-76 (332)
394 PRK12724 flagellar biosynthesi 66.3 31 0.00067 40.5 9.7 23 306-328 225-247 (432)
395 KOG1133 Helicase of the DEAD s 66.3 10 0.00022 46.2 5.9 47 283-329 13-59 (821)
396 COG0552 FtsY Signal recognitio 66.1 27 0.00059 39.4 8.8 122 307-473 142-276 (340)
397 TIGR01425 SRP54_euk signal rec 65.8 67 0.0014 38.0 12.5 34 307-341 103-136 (429)
398 PRK10919 ATP-dependent DNA hel 65.7 10 0.00022 47.7 6.1 65 285-355 2-70 (672)
399 PRK05973 replicative DNA helic 65.6 16 0.00035 39.5 6.8 55 299-354 59-113 (237)
400 PRK14873 primosome assembly pr 65.5 27 0.00058 43.7 9.6 93 606-702 170-264 (665)
401 CHL00206 ycf2 Ycf2; Provisiona 65.4 21 0.00046 48.9 9.0 43 302-348 1628-1670(2281)
402 KOG0991 Replication factor C, 65.1 5.7 0.00012 42.1 3.2 29 303-331 47-75 (333)
403 PF11793 FANCL_C: FANCL C-term 65.1 0.59 1.3E-05 40.3 -3.4 46 52-97 3-63 (70)
404 CHL00095 clpC Clp protease ATP 65.0 24 0.00052 45.5 9.5 28 303-330 199-226 (821)
405 PRK10867 signal recognition pa 64.9 31 0.00068 40.8 9.6 36 306-341 102-138 (433)
406 KOG0737 AAA+-type ATPase [Post 64.5 8.5 0.00018 43.7 4.5 50 301-354 124-173 (386)
407 PRK10865 protein disaggregatio 64.4 4.3E+02 0.0094 34.4 20.8 26 306-331 600-625 (857)
408 PRK13833 conjugal transfer pro 64.3 13 0.00028 42.1 6.2 47 281-330 124-170 (323)
409 TIGR02640 gas_vesic_GvpN gas v 64.0 17 0.00037 40.0 6.9 50 288-341 5-54 (262)
410 KOG1244 Predicted transcriptio 63.5 2.2 4.7E-05 45.6 -0.2 47 51-97 224-283 (336)
411 PRK05564 DNA polymerase III su 63.4 42 0.0009 37.9 10.1 26 306-331 28-53 (313)
412 PRK07276 DNA polymerase III su 63.4 46 0.001 37.2 10.1 47 285-332 2-50 (290)
413 TIGR01074 rep ATP-dependent DN 63.3 11 0.00023 47.5 5.8 64 286-355 2-69 (664)
414 PF13901 DUF4206: Domain of un 62.8 5.2 0.00011 42.2 2.5 39 50-97 151-197 (202)
415 COG1435 Tdk Thymidine kinase [ 62.2 28 0.00061 36.3 7.5 34 429-465 83-118 (201)
416 COG4626 Phage terminase-like p 62.2 38 0.00083 40.7 9.6 60 284-343 60-128 (546)
417 COG1474 CDC6 Cdc6-related prot 61.1 64 0.0014 37.4 11.1 48 285-332 20-70 (366)
418 TIGR00959 ffh signal recogniti 60.9 48 0.001 39.2 10.2 36 306-341 101-137 (428)
419 PF13771 zf-HC5HC2H: PHD-like 60.7 4.2 9.1E-05 36.7 1.2 32 49-80 34-68 (90)
420 PRK10416 signal recognition pa 60.7 90 0.002 35.4 12.1 35 305-340 115-149 (318)
421 TIGR00064 ftsY signal recognit 60.2 76 0.0017 35.1 11.2 34 306-340 74-107 (272)
422 PF14061 Mtf2_C: Polycomb-like 60.2 3.9 8.4E-05 32.2 0.7 23 195-217 26-49 (50)
423 COG0541 Ffh Signal recognition 60.0 33 0.00071 40.1 8.3 58 307-365 103-160 (451)
424 TIGR00767 rho transcription te 60.0 37 0.0008 39.6 8.8 31 301-331 165-195 (415)
425 KOG1081 Transcription factor N 59.9 5.8 0.00013 47.2 2.4 47 49-98 87-133 (463)
426 PF06745 KaiC: KaiC; InterPro 59.5 13 0.00027 39.8 4.8 55 302-356 17-71 (226)
427 TIGR01075 uvrD DNA helicase II 59.4 14 0.00031 46.8 6.0 66 285-356 4-73 (715)
428 KOG0780 Signal recognition par 59.2 25 0.00055 40.2 7.0 98 307-446 104-201 (483)
429 PF01393 Chromo_shadow: Chromo 58.9 3.7 8E-05 34.0 0.4 26 192-217 3-28 (58)
430 PF13832 zf-HC5HC2H_2: PHD-zin 58.8 4.5 9.8E-05 38.0 1.1 29 51-79 55-86 (110)
431 PRK11034 clpA ATP-dependent Cl 58.7 19 0.00041 45.7 6.8 28 303-330 206-233 (758)
432 PRK06995 flhF flagellar biosyn 58.4 57 0.0012 39.1 10.3 35 305-339 257-292 (484)
433 PRK10689 transcription-repair 58.4 85 0.0018 42.0 12.8 95 606-703 631-730 (1147)
434 cd01128 rho_factor Transcripti 58.3 43 0.00093 36.6 8.6 26 302-327 14-39 (249)
435 PF00437 T2SE: Type II/IV secr 58.2 15 0.00032 40.5 5.2 37 295-331 118-154 (270)
436 PRK11773 uvrD DNA-dependent he 58.0 17 0.00037 46.1 6.4 65 285-355 9-77 (721)
437 PRK08939 primosomal protein Dn 57.6 17 0.00036 41.1 5.5 46 293-339 143-190 (306)
438 TIGR02782 TrbB_P P-type conjug 57.5 23 0.0005 39.8 6.6 44 284-330 115-158 (299)
439 PF06068 TIP49: TIP49 C-termin 56.7 16 0.00034 41.9 5.0 40 303-344 49-88 (398)
440 PF03354 Terminase_1: Phage Te 56.7 76 0.0017 38.2 11.3 46 419-466 114-162 (477)
441 CHL00176 ftsH cell division pr 56.4 54 0.0012 40.9 10.0 25 304-328 216-240 (638)
442 PRK14970 DNA polymerase III su 55.6 60 0.0013 37.5 9.9 39 292-330 24-65 (367)
443 PRK05728 DNA polymerase III su 55.6 21 0.00046 35.4 5.2 82 606-706 11-96 (142)
444 PRK06921 hypothetical protein; 55.4 33 0.00071 37.9 7.3 38 303-340 116-153 (266)
445 TIGR03499 FlhF flagellar biosy 55.3 51 0.0011 36.7 8.8 39 303-341 193-232 (282)
446 cd01129 PulE-GspE PulE/GspE Th 55.0 25 0.00054 38.7 6.2 43 286-330 64-106 (264)
447 PF13639 zf-RING_2: Ring finge 54.8 1.4 2.9E-05 34.1 -2.7 39 53-96 2-44 (44)
448 PRK14723 flhF flagellar biosyn 54.4 70 0.0015 40.5 10.5 37 304-340 185-222 (767)
449 TIGR03880 KaiC_arch_3 KaiC dom 54.4 35 0.00076 36.3 7.2 53 302-355 14-66 (224)
450 KOG1807 Helicases [Replication 54.3 29 0.00063 42.9 6.9 90 285-380 378-473 (1025)
451 cd00984 DnaB_C DnaB helicase C 53.8 18 0.00039 38.9 4.8 44 300-343 9-52 (242)
452 TIGR03877 thermo_KaiC_1 KaiC d 53.8 37 0.0008 36.6 7.3 52 302-354 19-70 (237)
453 PF00265 TK: Thymidine kinase; 53.8 52 0.0011 33.9 7.9 34 308-342 5-38 (176)
454 PF01443 Viral_helicase1: Vira 53.8 17 0.00037 38.7 4.7 41 428-471 62-102 (234)
455 TIGR03345 VI_ClpV1 type VI sec 53.2 3.9E+02 0.0085 34.7 17.4 25 307-331 599-623 (852)
456 COG1066 Sms Predicted ATP-depe 53.1 53 0.0012 38.2 8.4 51 304-356 93-143 (456)
457 COG0467 RAD55 RecA-superfamily 52.8 36 0.00077 37.3 7.1 53 302-355 21-73 (260)
458 PRK08533 flagellar accessory p 52.8 41 0.00088 36.2 7.3 52 302-354 22-73 (230)
459 PHA00012 I assembly protein 52.4 37 0.0008 38.4 6.9 25 308-332 5-29 (361)
460 PRK14712 conjugal transfer nic 52.3 82 0.0018 43.3 11.2 59 285-345 835-896 (1623)
461 PRK13709 conjugal transfer nic 52.0 77 0.0017 44.0 11.1 60 284-345 966-1028(1747)
462 PF05127 Helicase_RecD: Helica 51.6 14 0.0003 38.1 3.3 35 308-342 1-35 (177)
463 KOG4218 Nuclear hormone recept 51.5 7.5 0.00016 42.9 1.3 50 47-96 11-74 (475)
464 PRK08760 replicative DNA helic 51.3 41 0.0009 40.4 7.8 63 293-355 218-280 (476)
465 TIGR00580 mfd transcription-re 51.1 70 0.0015 41.8 10.1 97 606-705 482-583 (926)
466 PF12846 AAA_10: AAA-like doma 50.8 44 0.00095 36.8 7.6 44 304-348 1-44 (304)
467 KOG0738 AAA+-type ATPase [Post 50.7 51 0.0011 38.0 7.6 47 305-355 246-292 (491)
468 KOG0740 AAA+-type ATPase [Post 50.7 18 0.0004 42.2 4.4 47 304-354 186-232 (428)
469 PF13481 AAA_25: AAA domain; P 50.6 19 0.00042 37.1 4.3 54 303-356 31-93 (193)
470 PHA00673 acetyltransferase dom 50.2 22 0.00048 35.7 4.4 43 429-471 88-133 (154)
471 PRK09376 rho transcription ter 50.1 72 0.0016 37.2 9.0 31 301-331 166-196 (416)
472 PRK09183 transposase/IS protei 49.8 16 0.00035 40.1 3.7 45 290-339 92-136 (259)
473 PRK05748 replicative DNA helic 49.6 37 0.0008 40.5 7.0 61 292-352 191-251 (448)
474 smart00300 ChSh Chromo Shadow 49.6 11 0.00024 31.6 1.8 24 192-215 7-30 (61)
475 PF05970 PIF1: PIF1-like helic 49.5 34 0.00074 39.6 6.5 60 285-345 1-62 (364)
476 PRK14721 flhF flagellar biosyn 49.5 1.2E+02 0.0027 35.7 11.0 55 428-483 269-328 (420)
477 PRK12377 putative replication 49.3 31 0.00067 37.6 5.7 42 304-346 101-142 (248)
478 PRK10263 DNA translocase FtsK; 49.0 57 0.0012 43.4 8.7 41 303-343 1009-1052(1355)
479 KOG0780 Signal recognition par 48.8 2.1E+02 0.0045 33.2 11.9 73 604-676 109-185 (483)
480 TIGR01073 pcrA ATP-dependent D 48.2 23 0.00051 45.0 5.3 52 285-342 4-58 (726)
481 PF06564 YhjQ: YhjQ protein; 48.1 31 0.00067 37.5 5.4 34 311-345 9-44 (243)
482 PRK12726 flagellar biosynthesi 48.0 2.1E+02 0.0045 33.5 12.1 48 303-351 205-256 (407)
483 PRK09087 hypothetical protein; 47.8 87 0.0019 33.6 8.9 36 430-465 89-125 (226)
484 KOG0442 Structure-specific end 47.6 7.2E+02 0.016 31.8 21.0 56 697-758 546-606 (892)
485 TIGR01243 CDC48 AAA family ATP 46.9 40 0.00087 43.0 7.1 42 303-348 486-527 (733)
486 TIGR03881 KaiC_arch_4 KaiC dom 46.7 51 0.0011 35.1 7.0 52 301-353 17-68 (229)
487 PRK13894 conjugal transfer ATP 46.5 42 0.00092 38.0 6.5 43 284-329 131-173 (319)
488 PF02606 LpxK: Tetraacyldisacc 46.5 93 0.002 35.5 9.2 122 314-467 47-189 (326)
489 KOG2340 Uncharacterized conser 46.4 68 0.0015 38.2 8.0 106 613-720 540-647 (698)
490 TIGR02785 addA_Gpos recombinat 46.3 41 0.00089 45.5 7.4 57 286-348 2-60 (1232)
491 cd03115 SRP The signal recogni 45.7 75 0.0016 32.1 7.7 36 307-342 3-38 (173)
492 PRK06904 replicative DNA helic 45.6 55 0.0012 39.3 7.6 60 293-352 210-269 (472)
493 cd00034 ChSh Chromo Shadow Dom 45.3 8 0.00017 31.5 0.3 22 194-215 2-24 (54)
494 TIGR01557 myb_SHAQKYF myb-like 45.2 46 0.001 27.5 4.8 45 968-1012 5-52 (57)
495 PRK13766 Hef nuclease; Provisi 45.1 4.5E+02 0.0097 33.7 16.3 93 606-705 39-141 (773)
496 TIGR02760 TraI_TIGR conjugativ 45.1 1.6E+02 0.0035 41.8 12.9 61 282-345 426-486 (1960)
497 cd00162 RING RING-finger (Real 45.1 5.7 0.00012 29.8 -0.5 41 54-97 2-43 (45)
498 PF07649 C1_3: C1-like domain; 44.8 8.5 0.00018 27.1 0.4 25 53-77 2-29 (30)
499 TIGR03600 phage_DnaB phage rep 44.6 56 0.0012 38.6 7.4 56 293-348 183-238 (421)
500 TIGR01243 CDC48 AAA family ATP 44.3 49 0.0011 42.2 7.3 37 302-342 210-246 (733)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.5e-171 Score=1508.56 Aligned_cols=830 Identities=44% Similarity=0.745 Sum_probs=700.0
Q ss_pred ccccccccccccCcCCC--C----------CcccccccchhhhhhhhhhcCCccccccccchHhHHHHhhcChhHHHHHH
Q 001750 101 DIDKILDCEMRPTVAGD--S----------DVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN 168 (1018)
Q Consensus 101 ~iekIL~wR~~p~~~~~--~----------~~~~~~~~~~~~~eylVKw~~~Sy~h~~W~~e~~l~~~~~~~~~~~~kl~ 168 (1018)
.++.++.||.++...+. . +......+...+.||||||+|+||+||+|+|++.|... ..++.+|+.
T Consensus 184 ~ie~v~~~r~~~~~~~~~~~~~~i~d~~~p~~~~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~ 260 (1373)
T KOG0384|consen 184 TIERVLDHRGKKGATGSAETEYAIPDKGDPSAVFEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVD 260 (1373)
T ss_pred hhHHHhhhhccccccCCCcccccccccCCccccccccCcchhhhhheeeccccceeccccchHHHHhh---hHHHHHHHH
Confidence 78899999864443221 0 00000111245689999999999999999999998643 234456999
Q ss_pred hhhhhhccCCC--CchhhhcCCCCcchhhhhhhhccCCCcceeeeeeccccccccccccCCCcCc-cHHHHHHHHHHhhc
Q 001750 169 NFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSR 245 (1018)
Q Consensus 169 ~f~kk~~~~~~--~~~~~~~~~~~~~~verIi~~~~~~~~~~ylVKW~~L~Y~~~tWE~~~~~~~-~~~~i~~~~~~~~~ 245 (1018)
||.++...... -.++...++++|.+|||||++....+ .+|||||+||||++||||...+|.. .+.++++|..+...
T Consensus 261 nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~s 339 (1373)
T KOG0384|consen 261 NFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENS 339 (1373)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcc
Confidence 99988543321 12334568999999999999986655 9999999999999999999998864 57778888765321
Q ss_pred ccccccCccCCCCcccccccCCCccccccccCCCCCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHH
Q 001750 246 SHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL 325 (1018)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l 325 (1018)
. ..|.......+.++.|.+++.||.|+.|++||+||++|||||.++|+++.+||||||||||||+|+|+||
T Consensus 340 k---------~~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl 410 (1373)
T KOG0384|consen 340 K---------TLPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL 410 (1373)
T ss_pred c---------cCCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH
Confidence 1 1122223445667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC--CCceEEEeCCccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 001750 326 ASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 403 (1018)
Q Consensus 326 ~~l~~~~--~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1018)
.+|++.. .||||||||+|++.+|++||.+|+ ++++++|+|+..+|++|++|||++.... .
T Consensus 411 ~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~-----------------~ 472 (1373)
T KOG0384|consen 411 SYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNT-----------------K 472 (1373)
T ss_pred HHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCc-----------------c
Confidence 9998754 689999999999999999999999 9999999999999999999999977641 3
Q ss_pred cccccEEEccHHHHhhccccccCCcceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001750 404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1018)
Q Consensus 404 ~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p 483 (1018)
..+|+++||||+++.+|..+|..|+|.+++|||||||||..++++..|..+...||||+||||+|||+.|||+|+|||+|
T Consensus 473 ~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC
Q 001750 484 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG 563 (1018)
Q Consensus 484 ~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~ 563 (1018)
+.|.++++|...| +..++..+..||..|+|+||||+|+||.+.||++.|+|++|+||++|+++|++||++|+.+|.++.
T Consensus 553 ~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~ 631 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA 631 (1373)
T ss_pred CCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC
Confidence 9999999999999 788899999999999999999999999999999999999999999999999999999999999864
Q ss_pred -CcchhHHHHHHHHHHhhCcccccCCCCCCccc------cHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhH
Q 001750 564 -GAQISLINVVMELRKLCCHPYMLEGVEPDIED------TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 636 (1018)
Q Consensus 564 -~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~------~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ 636 (1018)
++..+++|++|+||||||||||+.+++..+.. .++.++.||.+||||.+|++||.+|++.||||||||||++|
T Consensus 632 ~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRm 711 (1373)
T KOG0384|consen 632 KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRM 711 (1373)
T ss_pred CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHH
Confidence 44589999999999999999999998865433 34689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHH
Q 001750 637 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 716 (1018)
Q Consensus 637 ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~g 716 (1018)
||||++||..+||+|+||||++.++.|+++||+||+++|+.|||||||||||+||||++|||||||||||||++|+||++
T Consensus 712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA 791 (1373)
T ss_pred HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccccc-------cCCCHHHHHHHHhhchhhhhcccccCC
Q 001750 717 RAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA-------QNINQEELDDIIRYGSKELFADENDEG 789 (1018)
Q Consensus 717 R~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~~~~-------~~~~~~el~~il~~g~~~lf~~~~~~~ 789 (1018)
|||||||++.|+||||||++||||.|+++|++||.|+++|++.|.+ +.++++||.+||||||+++|+++++++
T Consensus 792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~ 871 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE 871 (1373)
T ss_pred HHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc
Confidence 9999999999999999999999999999999999999999988853 579999999999999999999987665
Q ss_pred CCcccCCCCHHHHHHHhcCCCCCCcccCCCCcchhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhccCCCCCCCchHH
Q 001750 790 GKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYW 869 (1018)
Q Consensus 790 ~~~~~~~~~~~~id~ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 869 (1018)
. .+.++|||+||.|++..++..++ -..++++|++|+||+|...++++- ++. ++-.|
T Consensus 872 s-----~~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls~fkvad~~~dd~~~~---------------~~~---~didw 927 (1373)
T KOG0384|consen 872 S-----KFCEMDIDEILERAETRITEESD-FMKASELLSQFKVADIKADDPADL---------------EAE---RDIDW 927 (1373)
T ss_pred c-----cccccCHHHHHhhcccccccccc-cchhHHHHhhccccccccCChhhh---------------hhh---ccCCh
Confidence 4 35679999999999886665442 356789999999999987554221 011 12579
Q ss_pred HHHHHhHHH-----HHHHHHHHhcCCCCCCcc--cccccchhhhcccccCCCCCCCccccccCCCCCCCCCCCCCCCCCC
Q 001750 870 EELLKDRYE-----VHKVEEFNALGKGKRSRK--QMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN 942 (1018)
Q Consensus 870 ~~~~~~~~~-----~~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1018)
+.|+++... +.+..+.+.+...+|.|. +..+.+.+. + .+.+.++. + .++ -.
T Consensus 928 d~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~--~-------~~~~~~e~--~----------~~~-~~ 985 (1373)
T KOG0384|consen 928 DRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG--R-------AESRSVEK--S----------LGK-KG 985 (1373)
T ss_pred hhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc--c-------cccccccc--c----------ccc-cc
Confidence 999997542 233334455655555553 333321111 0 00000000 0 011 11
Q ss_pred ccccCCCCCCCCCccccCCCcceecCCChHHHHHHHHHHHHhCCCCCchhhhc--ccccCCCHHHHHHHHHHHhhhcC
Q 001750 943 KKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYLTELCFICF 1018 (1018)
Q Consensus 943 ~~~~~~~~~~~~pl~~~~~~~~~v~Gf~~~~r~~f~~~~~~~g~~~~~~~~~~--~~l~~ks~~e~~~y~~~~~~~~~ 1018 (1018)
++|.|.+.. ....+.||+.++.|+|+++|++||++.+....++ ++|..+|+++++..+.++|+.|-
T Consensus 986 ~~r~r~~~~----------~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~l~~~s~~~~~~l~~~~~~~c~ 1053 (1373)
T KOG0384|consen 986 KGRWREILK----------RGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAELVDKSPAELKKLGELLHNACK 1053 (1373)
T ss_pred ccccccccc----------cchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhceeeccCHHHHHHHHHHHHhhhh
Confidence 223331111 2456889999999999999999999987655565 68999999999999999999993
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=9.3e-133 Score=1130.69 Aligned_cols=668 Identities=41% Similarity=0.668 Sum_probs=549.8
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhc-CC-CCceEEEeCCccHHHHHHHH
Q 001750 275 EHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPLSTLRNWEREF 352 (1018)
Q Consensus 275 ~~~P~~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~-~~-~~p~LIV~P~s~l~~W~~E~ 352 (1018)
..+|.++.+++|||||++|+|||+..|.++.|||||||||||||+|+|+|+.+|.. .+ .|||||+||+||+.||.+||
T Consensus 157 ~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef 236 (971)
T KOG0385|consen 157 EDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEF 236 (971)
T ss_pred cCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999987 33 68999999999999999999
Q ss_pred HHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEE
Q 001750 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCM 432 (1018)
Q Consensus 353 ~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~l 432 (1018)
.+|+|++++++|+|++..|..+++.-+ ...+|+|+||||+++.++..+|++++|.++
T Consensus 237 ~rf~P~l~~~~~~Gdk~eR~~~~r~~~-----------------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~yl 293 (971)
T KOG0385|consen 237 KRFTPSLNVVVYHGDKEERAALRRDIM-----------------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYL 293 (971)
T ss_pred HHhCCCcceEEEeCCHHHHHHHHHHhh-----------------------ccCCCceEeehHHHHHhhHHHHhcCCceEE
Confidence 999999999999999999988766422 123899999999999999999999999999
Q ss_pred EEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhch---hhHHHHHHHH
Q 001750 433 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLH 509 (1018)
Q Consensus 433 IvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~---~~~~~~~~L~ 509 (1018)
||||||||||.+|++++.|+.+.+.+||||||||+|||+.|||+|||||.|+.|++.+.|..+|... ...+.+.+||
T Consensus 294 vIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh 373 (971)
T KOG0385|consen 294 VIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLH 373 (971)
T ss_pred EechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999652 3446899999
Q ss_pred HHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHhhCcccccCC
Q 001750 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEG 588 (1018)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~-~~~~l~~~l~~Lrk~c~hP~l~~~ 588 (1018)
.+|+||+|||+|.+|.+.|||+.|.+++|.||++|+++|+.++.+....++..+. ....++|++|+||||||||||+++
T Consensus 374 ~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g 453 (971)
T KOG0385|consen 374 KVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG 453 (971)
T ss_pred hhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC
Confidence 9999999999999999999999999999999999999999999999998886553 678899999999999999999999
Q ss_pred CCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHH
Q 001750 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1018)
Q Consensus 589 ~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~ 668 (1018)
+++... .....+|+.+||||.+|++||++|+++||||||||||+.|||||++|+..+||.|+||||+++.++|..+|+
T Consensus 454 ~ePg~p--yttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~ 531 (971)
T KOG0385|consen 454 AEPGPP--YTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIE 531 (971)
T ss_pred CCCCCC--CCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHH
Confidence 887533 233478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHH
Q 001750 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1018)
Q Consensus 669 ~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~ 748 (1018)
.||++++..|+|||||||||+||||++|||||+||+||||+.|+||++|||||||+++|.||||||.+||||+|+++|..
T Consensus 532 ~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~ 611 (971)
T KOG0385|consen 532 AFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAA 611 (971)
T ss_pred hcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc-----cccCCCHHHHHHHHhhchhhhhcccccCCCCcccCCCCHHHHHHHhcCCCCCCcccCCC-Ccc
Q 001750 749 KMVLEHLVVGRL-----KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLD-DED 822 (1018)
Q Consensus 749 K~~l~~~v~~~~-----~~~~~~~~el~~il~~g~~~lf~~~~~~~~~~~~~~~~~~~id~ll~r~~~~~~~~~~~-~~~ 822 (1018)
|+.|+++||+.. +....+++++.+|+++|+..+|...+.+. ++ |||.||.|++..+.+.... ...
T Consensus 612 KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~~--------~d-Did~il~~~e~kt~e~~~~~~~~ 682 (971)
T KOG0385|consen 612 KLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKESTI--------SD-DIDRILERGEEKTAELNAKEAKL 682 (971)
T ss_pred HhchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhccccc--------ch-hHHHHHHhhhhhccCcchHHHhh
Confidence 999999999654 23347899999999999999998776432 23 9999999998665543321 011
Q ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHhHHHHHHHHHHHhcCCCCCCcccccccc
Q 001750 823 EDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVE 902 (1018)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 902 (1018)
+..-+..|.. +-.|..++++..+.... . .|-+-.+..-...-..-...+..|-|.+|++.+.+
T Consensus 683 ~~~~~~~~~~-~~~y~~eG~d~~ek~~~--~--------------~wiep~krerk~~d~y~r~~l~~g~~~P~~~~~~d 745 (971)
T KOG0385|consen 683 GESDLRNFGM-ISVYNFEGEDYKEKQSL--F--------------KWIEPPKRERKANDAYFREALRVGEPPPKQPEVQD 745 (971)
T ss_pred CcchhhhcCc-ceeeccCCcchhhhhhh--h--------------hhcCCchhhhhhhhhHHHHHHhcCCCCCCCccccc
Confidence 1111222321 11122333332211100 0 03222221111100011124445656778887632
Q ss_pred hhhhc-ccccCCCCCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccC---CCcceecCCChHHHHHHH
Q 001750 903 EDDLA-GLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQRAAFV 978 (1018)
Q Consensus 903 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---~~~~~v~Gf~~~~r~~f~ 978 (1018)
.+-+. .+++.. +.+.+.|... ..++++...+ ||...+ ...+.-.||++|.++.|.
T Consensus 746 ~qf~p~~L~el~-~kei~~~~k~------------------~e~~kin~~~--~lt~ee~~~k~~ll~~gft~w~k~df~ 804 (971)
T KOG0385|consen 746 FQFFPKRLFELL-EKEIEYYRKT------------------IEQKKINNAE--PLTQEEEEEKEELLSQGFTNWTKRDFN 804 (971)
T ss_pred cccCcHHHHHHH-HHHHHHHHHH------------------HHHHhccCCC--CCCcHHHhhhhhhhhccccchhhhhHH
Confidence 22111 233222 2222222210 1222333333 333322 566778999999999988
Q ss_pred HHH---HHhCCCCCchhhhcccccCCCHHHHHHHHHHHhhhc
Q 001750 979 QIL---MRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFIC 1017 (1018)
Q Consensus 979 ~~~---~~~g~~~~~~~~~~~~l~~ks~~e~~~y~~~~~~~~ 1017 (1018)
+++ .|||.++. ..+.+++.+ +++|+.+|+..||++|
T Consensus 805 ~fi~a~eKygr~di--~~ia~~~e~-~~eev~~y~rvfwer~ 843 (971)
T KOG0385|consen 805 QFIKANEKYGRDDI--ENIAAEVEG-TPEEVGEYARVFWERL 843 (971)
T ss_pred HHHHHhhccCcchh--hhhHHhhcC-CHHHHHHHHHHHHHHH
Confidence 877 89999998 457888998 9999999999999998
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=5.2e-107 Score=1000.32 Aligned_cols=688 Identities=39% Similarity=0.626 Sum_probs=547.7
Q ss_pred cccccCCCCCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC--CCCceEEEeCCccHHHHH
Q 001750 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1018)
Q Consensus 272 ~~~~~~P~~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~--~~~p~LIV~P~s~l~~W~ 349 (1018)
..+..+|.++. ++|||||++||+||+.++.++.+||||||||||||+|+|+++.++... ..+|+|||||++++.||.
T Consensus 157 ~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 157 TRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred ceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHH
Confidence 44667898888 799999999999999999999999999999999999999999998653 356999999999999999
Q ss_pred HHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcc
Q 001750 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1018)
Q Consensus 350 ~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w 429 (1018)
+||.+|+|.+++++|+|+...|..++...+ ...+|+|+||||+++.++...|..+.|
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------------~~~~~dVvITSYe~l~~e~~~L~k~~W 292 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQREELL-----------------------VAGKFDVCVTSFEMAIKEKTALKRFSW 292 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------------cccCCCcceecHHHHHHHHHHhccCCC
Confidence 999999999999999999998876655322 123689999999999999999999999
Q ss_pred eEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhch---hhHHHHH
Q 001750 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQIS 506 (1018)
Q Consensus 430 ~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~---~~~~~~~ 506 (1018)
++|||||||++||..|++++++..+.+.+||+|||||+||++.|||+||+||.|+.|++...|...|... .....+.
T Consensus 293 ~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~ 372 (1033)
T PLN03142 293 RYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQ 372 (1033)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998642 2356788
Q ss_pred HHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCccccc
Q 001750 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1018)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~ 586 (1018)
.|+.+|+|+|+||+|++|...|||+.+.++.|.||+.|+++|+.++.+....++.. +....+++++|+||+||+||||+
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhCCHHhh
Confidence 99999999999999999999999999999999999999999999999988777653 34567899999999999999999
Q ss_pred CCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHH
Q 001750 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1018)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~ 666 (1018)
.+.++.... .....++..|+|+.+|+++|..+...|+||||||||+.|+++|+++|...|++|++|+|+++..+|+.+
T Consensus 452 ~~~ep~~~~--~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 452 QGAEPGPPY--TTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred hcccccCcc--cchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 877654322 123567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHH
Q 001750 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1018)
Q Consensus 667 i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~ 746 (1018)
|++||++++..++|||||+|||+||||++||+||+||+||||+.++||+||||||||+++|.||||++++||||+|++++
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc---cccCCCHHHHHHHHhhchhhhhcccccCCCCcccCCCCHHHHHHHhcCCCCCCcccCC--CCc
Q 001750 747 KKKMVLEHLVVGRL---KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASL--DDE 821 (1018)
Q Consensus 747 ~~K~~l~~~v~~~~---~~~~~~~~el~~il~~g~~~lf~~~~~~~~~~~~~~~~~~~id~ll~r~~~~~~~~~~--~~~ 821 (1018)
.+|+.|+..|++.. ....+++++|.+|+++|++.+|+..+. .++|++||.||+|++..+.+... ..-
T Consensus 610 ~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~~--------~~~~~did~il~~~~~~~~~~~~~~~~~ 681 (1033)
T PLN03142 610 YKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDS--------TITDEDIDRIIAKGEEATAELDAKMKKF 681 (1033)
T ss_pred HHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChHHhhhccCC--------CCCHHHHHHHHHhcHHHHHHHHHHHHHh
Confidence 99999999999654 235689999999999999999964431 35799999999998755543211 111
Q ss_pred chhhhhhhhhhh--ccchhHHHHHHHHHH---HHHHHHhhccCCC------CCCCchHHHHHHHhHHHHHHHHHHHhcCC
Q 001750 822 DEDGFLKAFKVA--NFEYIEEVEAAAEEE---AQKLAAENKSSMS------NSERSSYWEELLKDRYEVHKVEEFNALGK 890 (1018)
Q Consensus 822 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 890 (1018)
..+ .+ .|+.. +-.|..++++..+.. -.+....+|+++. ++....|..+.|+.. . ..-.+
T Consensus 682 ~~~-~~-~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~re~~~~~~~~~~~~~~~~~~-------~-~~~~~ 751 (1033)
T PLN03142 682 TED-AI-KFKMDDTAELYDFDDEDDKDENKLDFKKIVSDNWIDPPKRERKRNYSESEYFKQAMRQG-------A-PAKPK 751 (1033)
T ss_pred chh-hh-cccccCCcceeeecCccccchhhhhHhhhccccccccchhhhhcccchhHHHHHHHhcC-------C-cccCC
Confidence 111 12 35433 011222222111100 0111112232221 222223333332210 0 12346
Q ss_pred CCCCcccccccchhhhc--ccccCCCCCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccC---CCcce
Q 001750 891 GKRSRKQMVSVEEDDLA--GLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE---GRSFR 965 (1018)
Q Consensus 891 ~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~---~~~~~ 965 (1018)
.||..|+++..+.+-+. ++.++. +.|...+.....+++ .... . ..+..++. ..||++.+ +.++.
T Consensus 752 ~~~~~~~~~~~~~q~~~~~~l~~l~-~~e~~~~~~~~~~~~-----~~~~--~-~~~~~~~~--~~~lt~~e~~~k~~l~ 820 (1033)
T PLN03142 752 EPRIPRMPQLHDFQFFNVQRLTELY-EKEVRYLMQAHQKGQ-----LKDT--I-DVAEPEEP--GDPLTAEEQEEKEQLL 820 (1033)
T ss_pred CCCCCCCCCCccccCCCHHHHHHHH-HHHHHHHhccccCCc-----hhhh--h-hhcccccc--CCCCCHHHHHHHHHHH
Confidence 67888887764333221 222221 111111110000000 0000 0 01223333 34787766 67888
Q ss_pred ecCCChHHHHHHHHHH---HHhCCCCCchhhhcccccCCCHHHHHHHHHHHhhhc
Q 001750 966 VLGFSQNQRAAFVQIL---MRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFIC 1017 (1018)
Q Consensus 966 v~Gf~~~~r~~f~~~~---~~~g~~~~~~~~~~~~l~~ks~~e~~~y~~~~~~~~ 1017 (1018)
-.||++|.|+.|.+++ .+||..++ ..|+.++.+||++||++|+.+||.+|
T Consensus 821 ~~gf~~w~~~~f~~f~~~~~~~gr~~~--~~i~~~~~~k~~~ev~~y~~~f~~~~ 873 (1033)
T PLN03142 821 EEGFSTWSRRDFNAFIRACEKYGRNDI--KSIASEMEGKTEEEVERYAKVFWERY 873 (1033)
T ss_pred hcCcCcccHHHHHHHHHHHHHhCHhHH--HHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 9999999999877666 99999988 45888999999999999999999987
No 4
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.2e-99 Score=876.71 Aligned_cols=507 Identities=44% Similarity=0.720 Sum_probs=446.8
Q ss_pred cccccCCCCCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC--CCCceEEEeCCccHHHHH
Q 001750 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1018)
Q Consensus 272 ~~~~~~P~~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~--~~~p~LIV~P~s~l~~W~ 349 (1018)
.....||..+.||+|++||+.||.||..++.++-+||||||||||||||+|++|.+|+.. ..||+|||||+++|.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 356789999999999999999999999999999999999999999999999999999874 467999999999999999
Q ss_pred HHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcc
Q 001750 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1018)
Q Consensus 350 ~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w 429 (1018)
.||.+|+|.+..+.|.|+++.|..+..- ....+|+|++|||+.+.++...|.+|.|
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~q------------------------ir~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQ------------------------QRHGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHH------------------------HhcccceeeeeeHHHhcCCHHHHhccCC
Confidence 9999999999999999999999865432 1236999999999999999999999999
Q ss_pred eEEEEcccccccCcccHHHHHHH-hcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchh--------
Q 001750 430 QCMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------- 500 (1018)
Q Consensus 430 ~~lIvDEaHrlKn~~s~~~~~l~-~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~-------- 500 (1018)
.++||||+||+||..+++...|. .+.+.+||||||||+||++.|||+||||+-|..|++...|.++|...-
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999999 778999999999999999999999999999999999999999995321
Q ss_pred --hH---HHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHH--hcCCcchhHHHHH
Q 001750 501 --QE---EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT--RRGGAQISLINVV 573 (1018)
Q Consensus 501 --~~---~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~--~~~~~~~~l~~~l 573 (1018)
.+ -.+.+||++|+||+|||.|++|...||.|++.++.|.||..|+.+|+.+.....-... ++.+...++.|.+
T Consensus 597 LteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~i 676 (1157)
T KOG0386|consen 597 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTI 676 (1157)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHh
Confidence 12 2478999999999999999999999999999999999999999999998654332222 2445567899999
Q ss_pred HHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEE
Q 001750 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYER 653 (1018)
Q Consensus 574 ~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~r 653 (1018)
|+|||||||||++..++......... ..|+..|||+.+|+++|++|++.|||||.|+||+.++++|++||..++|+|.|
T Consensus 677 mqLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlR 755 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLR 755 (1157)
T ss_pred HHHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheee
Confidence 99999999999998776654433322 68999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEe
Q 001750 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1018)
Q Consensus 654 ldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlv 733 (1018)
+||++..++|-..++.||.|+++.|+||+||+|||+|+||++||||||||+||||+.++||.+|||||||++.|.|+||+
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHhcccc-ccCCCHHHHHHHHhhchhhhhcccccCCCCcccCCCCHHHHHHHhcCCC
Q 001750 734 TRGSIEERMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQ 810 (1018)
Q Consensus 734 t~~TvEe~i~~~~~~K~~l~~~v~~~~~-~~~~~~~el~~il~~g~~~lf~~~~~~~~~~~~~~~~~~~id~ll~r~~ 810 (1018)
+.++|||.|+..|..|+..+..|+.... .+.-+.++=+.+| +.+...++++++ .-.-+++.|..+|.|++
T Consensus 836 tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~L----e~~l~~~~~~~~---~~v~~~~~ln~~larse 906 (1157)
T KOG0386|consen 836 TVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFL----EQLLEMEGDEEE---EEVPDDEVLNSMLARSE 906 (1157)
T ss_pred hhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHH----HHHHhCCCcccc---ccCCcHHHHHHHHhcch
Confidence 9999999999999999999999995432 2233344434443 222333322221 12346778999998874
No 5
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.1e-100 Score=892.43 Aligned_cols=622 Identities=51% Similarity=0.848 Sum_probs=546.3
Q ss_pred ccccccccccccccCCCeEecCCCCccccccccCCCCCCCCCCCCCccccCCCCC--ccccccccccccCcCC---CC-C
Q 001750 46 RIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN--DIDKILDCEMRPTVAG---DS-D 119 (1018)
Q Consensus 46 ~~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~--~iekIL~wR~~p~~~~---~~-~ 119 (1018)
..+.+...|.+|+++|++++|++|+.+||.+|+.||+...|.++|.|+.|.++.+ ++++|+.|||+|+... .. .
T Consensus 42 ~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~ 121 (696)
T KOG0383|consen 42 WDDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGV 121 (696)
T ss_pred cchhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCc
Confidence 3466788999999999999999999999999999999999999999999987765 8999999999988633 11 1
Q ss_pred cccccccchhhhhhhhhhcCCccccccccchHhHHHHhhcChhHHHHHHhhhhhhccCCC----------------C---
Q 001750 120 VSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNN----------------A--- 180 (1018)
Q Consensus 120 ~~~~~~~~~~~~eylVKw~~~Sy~h~~W~~e~~l~~~~~~~~~~~~kl~~f~kk~~~~~~----------------~--- 180 (1018)
...........++|+|||+|.||+||.|+++.+++..... +..+|..+.+...+ .
T Consensus 122 ~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~ 195 (696)
T KOG0383|consen 122 ISPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNT------LPVELQRKHDTDQKPEAEIGVTRDKGKLVPYADL 195 (696)
T ss_pred cCCcccccchhhhcccccccCCccchhHHHHHHhhhhccc------chHhhhhhhhcccCccccccccccCccccccccc
Confidence 1122334556799999999999999999999988765322 22334333222111 1
Q ss_pred chhh--hcCCCCcchhhhhhhhc-cCCCcceeeeeeccccccccccccCC-CcCccHHHHHHHHHHhhcccccccCccCC
Q 001750 181 EEDF--VAIRPEWTTVDRILACR-GEDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIKIQSRSHRSSCNKQKS 256 (1018)
Q Consensus 181 ~~~~--~~~~~~~~~verIi~~~-~~~~~~~ylVKW~~L~Y~~~tWE~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 256 (1018)
++.+ +.++|+|++++||++++ ...+...|+|||+.|+|++++|+.+. ++..++..+++|+....... ..+..
T Consensus 196 ~~r~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~~~---~~k~~- 271 (696)
T KOG0383|consen 196 EERFLLYGIKPEWMPIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREKPT---VSKDL- 271 (696)
T ss_pred hhhhhheeccccccccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCccc---ccccc-
Confidence 1112 46899999999999999 55688999999999999999999887 78888999998886544310 11000
Q ss_pred CCcccccccCCCccccccccCCCCCC--CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC--
Q 001750 257 SPQDVTESTKKPKEFQQYEHSPEFLS--GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-- 332 (1018)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~P~~~~--~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-- 332 (1018)
. ........++..+|.++. ++.|++||++|+||++.+|..+..+|||||||+|||+|++.|+..++...
T Consensus 272 ------~-~~~~~~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~ 344 (696)
T KOG0383|consen 272 ------K-SNTVDDPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHS 344 (696)
T ss_pred ------c-ccccCCCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCC
Confidence 0 013455677889999986 59999999999999999999999999999999999999999999998865
Q ss_pred CCceEEEeCCccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEc
Q 001750 333 ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLT 412 (1018)
Q Consensus 333 ~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvit 412 (1018)
.+|+|+++|.+++.+|.+|+..|+|++++++|+|+..+|.+++++++.+.+...+... ...........+|+|.++
T Consensus 345 ~~P~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~----~i~~~~~~s~~k~~vl~~ 420 (696)
T KOG0383|consen 345 PGPPLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSP----KISEMKTESSAKFHVLLP 420 (696)
T ss_pred CCCceeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccCC----ccccccchhhcccccCCC
Confidence 3599999999999999999999999999999999999999999999998887644331 122233455689999999
Q ss_pred cHHHHhhccccccCCcceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHH
Q 001750 413 SYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (1018)
Q Consensus 413 Tye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F 492 (1018)
+|+++..+...+..+.|.++|+||+||+||..|+++..+..+...++++|||||+|||+.|||+|||||.|+.|++...|
T Consensus 421 s~~~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f 500 (696)
T KOG0383|consen 421 SYETIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWF 500 (696)
T ss_pred chhhcccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHH
Q 001750 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1018)
Q Consensus 493 ~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~ 572 (1018)
.+.|.++..++++..||.++.|+|+||.|.||++.+|+|.+.+++++|++.|+++|+.++++|+..+.. ++.+.+++|+
T Consensus 501 ~e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~ 579 (696)
T KOG0383|consen 501 LEEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNI 579 (696)
T ss_pred hhhcchhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 7788899999
Q ss_pred HHHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEE
Q 001750 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE 652 (1018)
Q Consensus 573 l~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ 652 (1018)
+|+|||+|+|||+++..++...........++++|+|+.+|.+|++++++.|||||||+||+.|||+|++++...+ .|.
T Consensus 580 ~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~ 658 (696)
T KOG0383|consen 580 VMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYE 658 (696)
T ss_pred HHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cce
Confidence 9999999999999999766666677777899999999999999999999999999999999999999999999999 999
Q ss_pred EEeCCCChHHHHHHHHHhccCCCCceEEEeeccccccc
Q 001750 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1018)
Q Consensus 653 rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~G 690 (1018)
|+||.+++..||.+|++||++++..||||+||||||+|
T Consensus 659 r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 659 RIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred eccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999999999999999999998
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=6.5e-97 Score=842.23 Aligned_cols=464 Identities=44% Similarity=0.663 Sum_probs=407.5
Q ss_pred cccCCCCC-CCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeCCccHHHHHHH
Q 001750 274 YEHSPEFL-SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1018)
Q Consensus 274 ~~~~P~~~-~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~~W~~E 351 (1018)
...||..+ ++.+|+|||+-|||||.-.+.++-+||||||||||||+|+|+|+++|+..+ .||+|||||.||+.||.+|
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHH
Confidence 34577766 567999999999999999999999999999999999999999999999865 6799999999999999999
Q ss_pred HHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh---ccccccCCc
Q 001750 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (1018)
Q Consensus 352 ~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~---d~~~l~~i~ 428 (1018)
|.+|+|.+.|..|+|+...|..+|..-- ....+|+|+||||..+.. |..+|+..+
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~----------------------~~~~~ydVllTTY~la~~~kdDRsflk~~~ 524 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIK----------------------KNKDDYDVLLTTYNLAASSKDDRSFLKNQK 524 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHh----------------------ccCCCccEEEEEeecccCChHHHHHHHhcc
Confidence 9999999999999999999998877411 123589999999999954 677899999
Q ss_pred ceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCCh-HHHHHHHhchhh------
Q 001750 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL-EEFQEEFKDINQ------ 501 (1018)
Q Consensus 429 w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~-~~F~~~~~~~~~------ 501 (1018)
|+++|.||+|.|||..|.+|+.|..+.+++||||||||+|||+.||++||.|+.|..|.+. +++...|....+
T Consensus 525 ~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e 604 (941)
T KOG0389|consen 525 FNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIE 604 (941)
T ss_pred ccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999754 666666643321
Q ss_pred -----HHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCc--chhHHHHHH
Q 001750 502 -----EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVM 574 (1018)
Q Consensus 502 -----~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~--~~~l~~~l~ 574 (1018)
.+.+.+-..+++||+|||.|++|+++||||..+|.+|+|+..|+++|..++......++....+ ..+ .+++|
T Consensus 605 ~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlm 683 (941)
T KOG0389|consen 605 NALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLM 683 (941)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHH
Confidence 3578899999999999999999999999999999999999999999999987763333332222 112 67999
Q ss_pred HHHHhhCcccccCCCCCC---------------ccccH--HH-----------H----------------HHHHhhhhHH
Q 001750 575 ELRKLCCHPYMLEGVEPD---------------IEDTN--ES-----------F----------------KQLLESSGKL 610 (1018)
Q Consensus 575 ~Lrk~c~hP~l~~~~~~~---------------~~~~~--~~-----------~----------------~~li~~S~Kl 610 (1018)
+|||+.|||-|+.....+ ....+ -. + ..++-.|||.
T Consensus 684 qlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~ 763 (941)
T KOG0389|consen 684 QLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKC 763 (941)
T ss_pred HHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhH
Confidence 999999999987432211 00000 00 0 0134569999
Q ss_pred HHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeeccccccc
Q 001750 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1018)
Q Consensus 611 ~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~G 690 (1018)
..|.+||++++..|+||||||||+.|||||+-+|...|++|.|+||+|....||.+|+.||.+ .+.|||||||+|||.|
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d-~difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTD-KDIFVFLLSTKAGGFG 842 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccC-CceEEEEEeeccCcce
Confidence 999999999999999999999999999999999999999999999999999999999999984 5678999999999999
Q ss_pred ccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 001750 691 INLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK 761 (1018)
Q Consensus 691 INL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~~~ 761 (1018)
|||++||+|||+|.++||.+|.||.+||||+||+|+|+|||||+++||||.|+++|++|+.|+..+.+..+
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876543
No 7
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=3.3e-95 Score=842.31 Aligned_cols=479 Identities=40% Similarity=0.705 Sum_probs=424.1
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC--CCCceEEEeCCccHHHHHHH
Q 001750 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWERE 351 (1018)
Q Consensus 274 ~~~~P~~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~--~~~p~LIV~P~s~l~~W~~E 351 (1018)
++.+-.++-.|.||.||..|++||..+|.++-|||||||||||||||+|+++++|..+ ++||+|||||++++.||+-|
T Consensus 604 VktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEME 683 (1958)
T KOG0391|consen 604 VKTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEME 683 (1958)
T ss_pred eccCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHH
Confidence 3334344455899999999999999999999999999999999999999999999754 57899999999999999999
Q ss_pred HHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceE
Q 001750 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (1018)
Q Consensus 352 ~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~ 431 (1018)
|++|+|.+++..|+|+...|+.-|+. | .....|||+||||..+..|...|+...|.|
T Consensus 684 lKRwcPglKILTYyGs~kErkeKRqg-W----------------------~kPnaFHVCItSYklv~qd~~AFkrkrWqy 740 (1958)
T KOG0391|consen 684 LKRWCPGLKILTYYGSHKERKEKRQG-W----------------------AKPNAFHVCITSYKLVFQDLTAFKRKRWQY 740 (1958)
T ss_pred HhhhCCcceEeeecCCHHHHHHHhhc-c----------------------cCCCeeEEeehhhHHHHhHHHHHHhhccce
Confidence 99999999999999999998754431 1 123579999999999999999999999999
Q ss_pred EEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchh----------h
Q 001750 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------Q 501 (1018)
Q Consensus 432 lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~----------~ 501 (1018)
+|+||||++||..|+.+++|..+++.+||||||||+||++.|||+|++||+|..|.+...|..+|...- .
T Consensus 741 LvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn 820 (1958)
T KOG0391|consen 741 LVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYN 820 (1958)
T ss_pred eehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999997532 2
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhC
Q 001750 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1018)
Q Consensus 502 ~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~ 581 (1018)
...+.+||++|+||+|||+|.||+++||.|.|++|.|.||..|+.+|+.++.+.-..-.-..|+-++.+|++|+||||||
T Consensus 821 ~klV~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCN 900 (1958)
T KOG0391|consen 821 HKLVIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCN 900 (1958)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999999999999999887665555667888999999999999999
Q ss_pred cccccCCCC--------------------------------------C------Cc------------------------
Q 001750 582 HPYMLEGVE--------------------------------------P------DI------------------------ 593 (1018)
Q Consensus 582 hP~l~~~~~--------------------------------------~------~~------------------------ 593 (1018)
||-|++.-- + ..
T Consensus 901 HPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~r 980 (1958)
T KOG0391|consen 901 HPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGR 980 (1958)
T ss_pred CCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCC
Confidence 997763100 0 00
Q ss_pred -----------------------cc--------------------------------cH---------------------
Q 001750 594 -----------------------ED--------------------------------TN--------------------- 597 (1018)
Q Consensus 594 -----------------------~~--------------------------------~~--------------------- 597 (1018)
.. .+
T Consensus 981 Pp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl 1060 (1958)
T KOG0391|consen 981 PPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVL 1060 (1958)
T ss_pred CCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCcccccccee
Confidence 00 00
Q ss_pred ----------------------------------------------------------------------------HHH-
Q 001750 598 ----------------------------------------------------------------------------ESF- 600 (1018)
Q Consensus 598 ----------------------------------------------------------------------------~~~- 600 (1018)
+.+
T Consensus 1061 ~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ 1140 (1958)
T KOG0391|consen 1061 QIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLD 1140 (1958)
T ss_pred eeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHH
Confidence 000
Q ss_pred -----------------------------------------------HHHH-----------------------------
Q 001750 601 -----------------------------------------------KQLL----------------------------- 604 (1018)
Q Consensus 601 -----------------------------------------------~~li----------------------------- 604 (1018)
..+|
T Consensus 1141 ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r 1220 (1958)
T KOG0391|consen 1141 RIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHR 1220 (1958)
T ss_pred HHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchH
Confidence 0000
Q ss_pred ------------------------------------hhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCC
Q 001750 605 ------------------------------------ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK 648 (1018)
Q Consensus 605 ------------------------------------~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g 648 (1018)
..+||++.|.-||+.|+..|||||||+||+.|||+|+.||.++|
T Consensus 1221 ~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHg 1300 (1958)
T KOG0391|consen 1221 MRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHG 1300 (1958)
T ss_pred HHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcc
Confidence 02899999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 649 ~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
|.|.||||.++.++||..+++||+ +...|||+|||++||+||||+.||||||||+||||..|.||.+|||||||++.|+
T Consensus 1301 ylY~RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVH 1379 (1958)
T KOG0391|consen 1301 YLYVRLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 1379 (1958)
T ss_pred eEEEEecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceE
Confidence 999999999999999999999998 5678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHHHhccc--cccCCCHHHHHHHHhh
Q 001750 729 IFRLITRGSIEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIRY 776 (1018)
Q Consensus 729 Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~~--~~~~~~~~el~~il~~ 776 (1018)
|||||+..||||.|+..+..|.+|+.+++++. ...-+.+.++.+||..
T Consensus 1380 IYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1380 IYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred EEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcC
Confidence 99999999999999999999999999999654 3445667777776643
No 8
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-94 Score=807.17 Aligned_cols=457 Identities=45% Similarity=0.756 Sum_probs=410.7
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC--CCCceEEEeCCccHHHHHHH
Q 001750 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWERE 351 (1018)
Q Consensus 274 ~~~~P~~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~--~~~p~LIV~P~s~l~~W~~E 351 (1018)
.-.||..+. ++|+.||+.|+|||..+|.+|-|||||||||||||+|+|+++++|... -+||||||+|.|++.||.+|
T Consensus 557 tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 557 TVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 345777776 799999999999999999999999999999999999999999999874 46899999999999999999
Q ss_pred HHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceE
Q 001750 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (1018)
Q Consensus 352 ~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~ 431 (1018)
|.+|+|+++++.|.|+...|.+++.+ +.+.+ . -.....|||+||||+++..|...|++++|.+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKf--w~rKn---m------------Y~rna~fhVviTSYQlvVtDeky~qkvKWQY 698 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKF--WNRKN---M------------YRRNAPFHVVITSYQLVVTDEKYLQKVKWQY 698 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHh--cchhh---h------------hccCCCceEEEEeeeeeechHHHHHhhhhhh
Confidence 99999999999999999999998874 11110 0 1234689999999999999999999999999
Q ss_pred EEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhch----------hh
Q 001750 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI----------NQ 501 (1018)
Q Consensus 432 lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~----------~~ 501 (1018)
+|+|||+.+|+..|..++.|..|+++.||||||||+||++.|||+||||++|..|.+..+|.++|..- .+
T Consensus 699 MILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln 778 (1185)
T KOG0388|consen 699 MILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN 778 (1185)
T ss_pred eehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999531 24
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhC
Q 001750 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1018)
Q Consensus 502 ~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~ 581 (1018)
+.++.+||.+|+||||||.|++|...|..|.++.|.|.||..|+.+|+.|-.+.. ...+.+++|+|||+||
T Consensus 779 eqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS---------~~E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 779 EQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS---------SMEMENLVMQLRKVCN 849 (1185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999866543 2234469999999999
Q ss_pred cccccCCCCCCcc-------------------------------------------------------------------
Q 001750 582 HPYMLEGVEPDIE------------------------------------------------------------------- 594 (1018)
Q Consensus 582 hP~l~~~~~~~~~------------------------------------------------------------------- 594 (1018)
||-|++..++...
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~ 929 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLS 929 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccce
Confidence 9988743322100
Q ss_pred -----------ccH------------------H-----------------------------------------------
Q 001750 595 -----------DTN------------------E----------------------------------------------- 598 (1018)
Q Consensus 595 -----------~~~------------------~----------------------------------------------- 598 (1018)
..+ +
T Consensus 930 ~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~ 1009 (1185)
T KOG0388|consen 930 LEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHI 1009 (1185)
T ss_pred eeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCc
Confidence 000 0
Q ss_pred ---------HHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHH
Q 001750 599 ---------SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 599 ---------~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
.+..++..|||+..|+.||++|++.|||||+|.||+.|+|+|++||..+||.|.|+||+.+...|..+|..
T Consensus 1010 pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrD 1089 (1185)
T KOG0388|consen 1010 PLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRD 1089 (1185)
T ss_pred ccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhh
Confidence 00112345999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K 749 (1018)
|++ ++.|||||||||||+||||++||||||||+||||..+.||++||||.||++.|+||||++++||||+|++++++|
T Consensus 1090 wQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK 1167 (1185)
T KOG0388|consen 1090 WQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQK 1167 (1185)
T ss_pred ccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhH
Confidence 997 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 001750 750 MVLEHLVVGR 759 (1018)
Q Consensus 750 ~~l~~~v~~~ 759 (1018)
....++|+.+
T Consensus 1168 ~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1168 DEVQQMVMHG 1177 (1185)
T ss_pred HHHHHHHHcC
Confidence 9999999854
No 9
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.8e-92 Score=807.44 Aligned_cols=486 Identities=37% Similarity=0.630 Sum_probs=412.6
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC--CCceEEEeCCccHHHHHHHHH
Q 001750 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREFA 353 (1018)
Q Consensus 276 ~~P~~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~--~~p~LIV~P~s~l~~W~~E~~ 353 (1018)
..|.++. ..|+|||.+||+||...++++.||||+||||||||||+|+||+.|.+.+ .+|.|||||.+++.||.+||+
T Consensus 197 ~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 3444443 4799999999999999999999999999999999999999999998763 469999999999999999999
Q ss_pred HHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEE
Q 001750 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMI 433 (1018)
Q Consensus 354 ~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lI 433 (1018)
+|+|.++|.+|||+...-. ++.+... .++.. .........-+|+||||+.+......+..+.|+++|
T Consensus 276 ~w~p~~rv~ilh~t~s~~r----~~~~~~~------~~~~~---~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~I 342 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGAR----YDASHSS------HKKDK---LLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVI 342 (923)
T ss_pred HhCcceEEEEEecCCcccc----cccchhh------hhhhh---hheeeecccCcEEEEehhhhcccCcccccccccEEE
Confidence 9999999999999866311 0000000 00000 001112345679999999999999999999999999
Q ss_pred EcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchh-------------
Q 001750 434 VDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN------------- 500 (1018)
Q Consensus 434 vDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~------------- 500 (1018)
+||+|+|||++|+++.+++.+.+.+|++|||||+|||+.|||+|+.|+.|+.+++...|.+.|..+.
T Consensus 343 LDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv 422 (923)
T KOG0387|consen 343 LDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV 422 (923)
T ss_pred ecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999996432
Q ss_pred --hHHHHHHHHHHhhhHHHHHHHhhHhh-cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Q 001750 501 --QEEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELR 577 (1018)
Q Consensus 501 --~~~~~~~L~~~L~p~~lRR~k~dv~~-~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lr 577 (1018)
...-...|+.+|+||+|||+|+||.. .||.|.+++|+|.||+.|+.+|..++.... +...-......+.-+.-||
T Consensus 423 ~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~--v~~i~ng~~~~l~Gi~iLr 500 (923)
T KOG0387|consen 423 QTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSE--VNKILNGKRNCLSGIDILR 500 (923)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHH--HHHHHcCCccceechHHHH
Confidence 12334569999999999999999999 999999999999999999999999886532 1111112223344456699
Q ss_pred HhhCcccccCCCCC-CccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHh-hCCCcEEEEe
Q 001750 578 KLCCHPYMLEGVEP-DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-FKKWQYERID 655 (1018)
Q Consensus 578 k~c~hP~l~~~~~~-~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~-~~g~~~~rld 655 (1018)
++||||-|+..-.. ....++ ....++.|||+.+|.++|..++.+|+|||+|||...|||+|+.+|. ..||+|+|+|
T Consensus 501 kICnHPdll~~~~~~~~~~~D--~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmD 578 (923)
T KOG0387|consen 501 KICNHPDLLDRRDEDEKQGPD--YEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMD 578 (923)
T ss_pred hhcCCcccccCcccccccCCC--cCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEec
Confidence 99999999976421 111111 1245678999999999999999999999999999999999999999 7999999999
Q ss_pred CCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 656 G~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
|.++...|+.+|++||++. ..+||||+|++||+|+||++||.||||||||||+.|.||..||+||||+|.|.||||++.
T Consensus 579 GtT~~~~R~~lVd~Fne~~-s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDE-SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred CCCccchhhHHHHhhcCCC-ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 9999999999999999855 467899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-ccccccCCCHHHHHHHHhhchhh
Q 001750 736 GSIEERMMQMTKKKMVLEHLVV-GRLKAQNINQEELDDIIRYGSKE 780 (1018)
Q Consensus 736 ~TvEe~i~~~~~~K~~l~~~v~-~~~~~~~~~~~el~~il~~g~~~ 780 (1018)
|||||+||.++--|..|.+.++ +.....-+...+|.+|+..+..+
T Consensus 658 gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~G 703 (923)
T KOG0387|consen 658 GTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDFG 703 (923)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCCC
Confidence 9999999999999999999888 44456678889999998877543
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.4e-85 Score=773.21 Aligned_cols=465 Identities=38% Similarity=0.626 Sum_probs=404.0
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhc-C-------CCCceEEEeCCccHHHHHHHHHHH
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-E-------RISPHLVVAPLSTLRNWEREFATW 355 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~-~-------~~~p~LIV~P~s~l~~W~~E~~~~ 355 (1018)
.+||.||.+|||||.+....+-+|||||+||||||+|+|++++.=.. . ..-|.|||||.++..+|+.|+.++
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 57999999999999999999999999999999999999999875322 1 234899999999999999999999
Q ss_pred cCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEc
Q 001750 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1018)
Q Consensus 356 ~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvD 435 (1018)
+|-++|+.|.|....|..+|.. ..+.+|+||||+.+++|...|..+.|.++|+|
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q--------------------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ--------------------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLD 1107 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh--------------------------ccccceEEeeHHHHHHHHHHHHhcccceEEec
Confidence 9999999999999999877663 23568999999999999999999999999999
Q ss_pred ccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchh---------------
Q 001750 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------------- 500 (1018)
Q Consensus 436 EaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~--------------- 500 (1018)
|+|-+||.+++++++++++.+.|||+|||||+|||+.|||+|++||+|+.+++...|.++|....
T Consensus 1108 EGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~Ea 1187 (1549)
T KOG0392|consen 1108 EGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEA 1187 (1549)
T ss_pred CcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999996421
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-------cCC-cchhHHHH
Q 001750 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-------RGG-AQISLINV 572 (1018)
Q Consensus 501 ~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~-------~~~-~~~~l~~~ 572 (1018)
..-.++.||+.+=|||+||+|+||+++||||..+..+|+|++.|+++|+.+..+....... ..+ ........
T Consensus 1188 G~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqa 1267 (1549)
T KOG0392|consen 1188 GVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQA 1267 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHH
Confidence 1235788999999999999999999999999999999999999999999998873222111 111 14556788
Q ss_pred HHHHHHhhCcccccCCC-CCCccccHHH----HHHH--HhhhhHHHHHHHHHHHHH--------------HhCCeEEEEe
Q 001750 573 VMELRKLCCHPYMLEGV-EPDIEDTNES----FKQL--LESSGKLQLLDKMMVKLK--------------EQGHRVLIYS 631 (1018)
Q Consensus 573 l~~Lrk~c~hP~l~~~~-~~~~~~~~~~----~~~l--i~~S~Kl~~L~klL~~l~--------------~~g~kvLIFs 631 (1018)
+..|||.||||.|.-.. .++....... ...+ +..|+|+.+|..+|...- -.+||+||||
T Consensus 1268 LqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFc 1347 (1549)
T KOG0392|consen 1268 LQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFC 1347 (1549)
T ss_pred HHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEee
Confidence 99999999999998653 2222111111 1223 678999999999998653 1479999999
Q ss_pred chhhHHHHHHHHHhh---CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCc
Q 001750 632 QFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP 708 (1018)
Q Consensus 632 q~~~~ldiL~~~L~~---~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp 708 (1018)
|+..|+|++++-|-. ..+.|.|+||++++.+|++++.+||++++.. |+|++|.+||+|+|||+|||||+++-||||
T Consensus 1348 QlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptID-vLlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1348 QLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTID-VLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCcee-EEEEeeeccccccccCCCceEEEEecCCCc
Confidence 999999999998854 3567999999999999999999999987765 499999999999999999999999999999
Q ss_pred chHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccccc--cCCCHHHHHHHHh
Q 001750 709 HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNINQEELDDIIR 775 (1018)
Q Consensus 709 ~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~el~~il~ 775 (1018)
.+|+||++|||||||++.|+||||||+||+||+|+..++-||..++.|++.-++ ..++-++|.+++.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999976433 4566777777764
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-73 Score=673.09 Aligned_cols=453 Identities=36% Similarity=0.557 Sum_probs=381.9
Q ss_pred CCChhHHHHHHHHHHHhhc------CCCceEEEcCCCccHHHHHHHHHHHHhcCCC------CceEEEeCCccHHHHHHH
Q 001750 284 GSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTLRNWERE 351 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~------~~~~~ILaDemGlGKTiqai~~l~~l~~~~~------~p~LIV~P~s~l~~W~~E 351 (1018)
..|||||.||++||..+.. ..+|||+||+||+|||+|+|+||..++...+ ...|||||.+++.||.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5799999999999977653 4578999999999999999999999987643 478999999999999999
Q ss_pred HHHHcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcc
Q 001750 352 FATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1018)
Q Consensus 352 ~~~~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w 429 (1018)
|.+|.. .+....++|...+ ..+....+.+-. ......-|++.||+++..+...+.....
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~------------------~~~~~~~vli~sye~~~~~~~~il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLG------------------YKQFTTPVLIISYETASDYCRKILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhh------------------hhheeEEEEeccHHHHHHHHHHHhcCCC
Confidence 999985 5777777777665 111111111000 0123456999999999988888999999
Q ss_pred eEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchh---------
Q 001750 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (1018)
Q Consensus 430 ~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~--------- 500 (1018)
++||+||+|++||..++++++|..+.+++|++|||||+|||+.|+|++|+|..|+.+++...|...|....
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885322
Q ss_pred -----hHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 001750 501 -----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (1018)
Q Consensus 501 -----~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~ 575 (1018)
.++.+++|..+..+|++||+-....+.||++.+++|.|.+|+.|+.+|+.++... ..... .+ ..+..+..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~-~~---~~l~~~~~ 532 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTL-KG---YALELITK 532 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhh-hc---chhhHHHH
Confidence 1345888999999999999999999999999999999999999999999998864 11111 11 15566778
Q ss_pred HHHhhCcccccCCCCCC-----ccccHHHHH--------HHHhhhhHHHHHHHHHHHHHHh-CCeEEEEechhhHHHHHH
Q 001750 576 LRKLCCHPYMLEGVEPD-----IEDTNESFK--------QLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLE 641 (1018)
Q Consensus 576 Lrk~c~hP~l~~~~~~~-----~~~~~~~~~--------~li~~S~Kl~~L~klL~~l~~~-g~kvLIFsq~~~~ldiL~ 641 (1018)
|+++|+||.|+...+.. ...+..... .-...|+|+..|..|+....+. -.++++.|+++.++|+++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHH
Confidence 99999999998521111 111111100 1123489999999999766554 346677778899999999
Q ss_pred HHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhh
Q 001750 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1018)
Q Consensus 642 ~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRi 721 (1018)
..++.+|+.++|+||+++..+||.+|+.||.+.+..||||+||+|||+||||.+|++||+||++|||+++.||++||+|.
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccc
Q 001750 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1018)
Q Consensus 722 GQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~~ 760 (1018)
||+++|+||||++.||+||+|++++..|..|...|++.-
T Consensus 693 GQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 693 GQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred CCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecc
Confidence 999999999999999999999999999999999998653
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=9.5e-69 Score=613.70 Aligned_cols=471 Identities=32% Similarity=0.522 Sum_probs=383.0
Q ss_pred CCChhHHHHHHHHHHHhh---------cCCCceEEEcCCCccHHHHHHHHHHHHhcC---CCCceEEEeCCccHHHHHHH
Q 001750 284 GSLHPYQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRNWERE 351 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~---------~~~~~~ILaDemGlGKTiqai~~l~~l~~~---~~~p~LIV~P~s~l~~W~~E 351 (1018)
..|+|||..||.||..+. ..|.|||||+-||||||+|+|+|++.++.. +...+|||||++++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 479999999999996544 357899999999999999999999988643 45699999999999999999
Q ss_pred HHHHcCCCe------EEEEec--ChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--
Q 001750 352 FATWAPQMN------VVMYVG--TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-- 421 (1018)
Q Consensus 352 ~~~~~p~~~------vv~y~g--~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~-- 421 (1018)
|++|.+++. |..+.. ....|....+ .| ...-.|+|+-|++++.-.
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~-~W------------------------~~~ggVmIiGYdmyRnLa~g 801 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQ-RW------------------------QEDGGVMIIGYDMYRNLAQG 801 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHH-HH------------------------HhcCCEEEEehHHHHHHhcc
Confidence 999998532 222211 1112211110 01 012269999999986421
Q ss_pred -------------ccccCCcceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCC
Q 001750 422 -------------ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1018)
Q Consensus 422 -------------~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~ 488 (1018)
..|..-..++||+||||-|||..|.+++++..+.+++||+|||||||||+.|++.+++|+.|+.+++
T Consensus 802 r~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs 881 (1567)
T KOG1015|consen 802 RNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGS 881 (1567)
T ss_pred cchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccC
Confidence 1233335789999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhchhhH---------------HHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHH
Q 001750 489 LEEFQEEFKDINQE---------------EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (1018)
Q Consensus 489 ~~~F~~~~~~~~~~---------------~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~ 553 (1018)
..+|.+.|.++.+. ....-|+.+|..++-|+--..+.+.||||.+++|.|.||+.|..+|...|+
T Consensus 882 ~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 882 IKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred cHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 99999999754321 223568899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHh---cCCcchhHHHHHHHHHHhhCcccccC-----------------------CCC-----------------
Q 001750 554 RNYQILTR---RGGAQISLINVVMELRKLCCHPYMLE-----------------------GVE----------------- 590 (1018)
Q Consensus 554 ~~~~~l~~---~~~~~~~l~~~l~~Lrk~c~hP~l~~-----------------------~~~----------------- 590 (1018)
.....-+. +.|....++.-+..|+++.+||+... ...
T Consensus 962 h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks 1041 (1567)
T KOG1015|consen 962 HLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKS 1041 (1567)
T ss_pred hccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccc
Confidence 32221111 12345568888889999999998641 000
Q ss_pred ------CC-c----------------------------------------------------cccHHHHHHH--------
Q 001750 591 ------PD-I----------------------------------------------------EDTNESFKQL-------- 603 (1018)
Q Consensus 591 ------~~-~----------------------------------------------------~~~~~~~~~l-------- 603 (1018)
+. . ..+.+.+..+
T Consensus 1042 ~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v 1121 (1567)
T KOG1015|consen 1042 GKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEV 1121 (1567)
T ss_pred cccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhh
Confidence 00 0 0000111122
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhh----------------------CCCcEEEEeCCCChH
Q 001750 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----------------------KKWQYERIDGKVGGA 661 (1018)
Q Consensus 604 i~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~----------------------~g~~~~rldG~~~~~ 661 (1018)
+..||||.+|.+||....+-|.|+|||||....||+|++||.. .|..|.||||++...
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 3469999999999999999999999999999999999999952 466899999999999
Q ss_pred HHHHHHHHhccCCCCc-eEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHH
Q 001750 662 ERQIRIDRFNAKNSSR-FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1018)
Q Consensus 662 ~Rq~~i~~Fn~~~s~~-~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe 740 (1018)
+|++..++||++.+-+ .+||||||||++||||-+|+.|||||-.|||.-|.|++-|++|+||+|+|+|||||+.||+||
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEe 1281 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEE 1281 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHH
Confidence 9999999999887644 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccc-ccCCCHHHHHHHHhhchh
Q 001750 741 RMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGSK 779 (1018)
Q Consensus 741 ~i~~~~~~K~~l~~~v~~~~~-~~~~~~~el~~il~~g~~ 779 (1018)
+||.++-.|..+...|+++-. ...++.+||..|..|...
T Consensus 1282 KIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1282 KIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPD 1321 (1567)
T ss_pred HHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCc
Confidence 999999999999999997643 345788899988877654
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-66 Score=564.75 Aligned_cols=467 Identities=30% Similarity=0.502 Sum_probs=378.5
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHhhc-CCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHH
Q 001750 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1018)
Q Consensus 274 ~~~~P~~~~~~~L~~yQ~egv~wl~~~~~-~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~ 352 (1018)
-.+||.-+. ..|.|||++|+.|+...-. .-.|||||||||+|||||+|+++.. .-...|+|||||...+.||.+||
T Consensus 174 ~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlmQW~nEI 250 (791)
T KOG1002|consen 174 RAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALMQWKNEI 250 (791)
T ss_pred cccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--ccccCCeeEEccHHHHHHHHHHH
Confidence 345666554 5799999999999965543 5679999999999999999999876 33345999999999999999999
Q ss_pred HHHc-CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc-----------
Q 001750 353 ATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------- 420 (1018)
Q Consensus 353 ~~~~-p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d----------- 420 (1018)
.+++ ..+++.+|||.+....+ .....||||+|||..+-..
T Consensus 251 ~~~T~gslkv~~YhG~~R~~ni----------------------------kel~~YDvVLTty~vvEs~yRk~~~GfrrK 302 (791)
T KOG1002|consen 251 ERHTSGSLKVYIYHGAKRDKNI----------------------------KELMNYDVVLTTYAVVESVYRKQDYGFRRK 302 (791)
T ss_pred HHhccCceEEEEEecccccCCH----------------------------HHhhcCcEEEEecHHHHHHHHhcccccccc
Confidence 9998 56899999998755432 1346899999999988432
Q ss_pred ------cccccCCcceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHH
Q 001750 421 ------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQE 494 (1018)
Q Consensus 421 ------~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~ 494 (1018)
.+.|.+++|..||+||||.+|+..|...+++..+.+.+||+|||||+||.+.|||+|++||..+.|..+ |-.
T Consensus 303 ngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyy--fc~ 380 (791)
T KOG1002|consen 303 NGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYY--FCT 380 (791)
T ss_pred CCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhh--hhh
Confidence 346888999999999999999999999999999999999999999999999999999999998876421 110
Q ss_pred H-----------------------------Hh-----ch-------hhHHHHHHHHHHhhhHHHHHHHhhHhh--cCCCc
Q 001750 495 E-----------------------------FK-----DI-------NQEEQISRLHRMLAPHLLRRVKKDVMK--ELPPK 531 (1018)
Q Consensus 495 ~-----------------------------~~-----~~-------~~~~~~~~L~~~L~p~~lRR~k~dv~~--~lP~k 531 (1018)
. |. .+ .........|.+|+.+|+||+|-.-.. .|||.
T Consensus 381 ~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPR 460 (791)
T KOG1002|consen 381 KCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPR 460 (791)
T ss_pred hccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCcc
Confidence 0 00 00 112445678999999999999965333 58999
Q ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHHHhc------CCcchhHHHHHHHHHHhhCcccccCCCCC--------------
Q 001750 532 KELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLCCHPYMLEGVEP-------------- 591 (1018)
Q Consensus 532 ~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~------~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~-------------- 591 (1018)
...+-+=-++..+..+|+.+.......++.- -.+...++.++.+||++..||+|+-....
T Consensus 461 iv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~ 540 (791)
T KOG1002|consen 461 IVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECG 540 (791)
T ss_pred ceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeec
Confidence 8888888899999999999887654444321 13455678889999999999998732100
Q ss_pred ---C-----cccc---------------------------------------------HHH------HH----HHHhhhh
Q 001750 592 ---D-----IEDT---------------------------------------------NES------FK----QLLESSG 608 (1018)
Q Consensus 592 ---~-----~~~~---------------------------------------------~~~------~~----~li~~S~ 608 (1018)
+ +... ... +. .-+++|.
T Consensus 541 lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsST 620 (791)
T KOG1002|consen 541 LCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSST 620 (791)
T ss_pred ccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchh
Confidence 0 0000 000 00 0135689
Q ss_pred HHHHHHHHHHHHHHhC--CeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeeccc
Q 001750 609 KLQLLDKMMVKLKEQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1018)
Q Consensus 609 Kl~~L~klL~~l~~~g--~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstra 686 (1018)
|+.+|.+=|..+.++. -|.||||||+.|||+|.-.|...|++.+.+.|+|+...|..+|..|.++... -|||+|.+|
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c-~vfLvSLkA 699 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDC-RVFLVSLKA 699 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCe-EEEEEEecc
Confidence 9999999998888765 4899999999999999999999999999999999999999999999876554 459999999
Q ss_pred ccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcccc--ccC
Q 001750 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--AQN 764 (1018)
Q Consensus 687 gg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~~~--~~~ 764 (1018)
||+.+||+.|++|+++||+|||+...||++|+|||||.++|.|.||+.++|||++|++++++|..+.|+-+|... -..
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~k 779 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISK 779 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987642 235
Q ss_pred CCHHHHHHHH
Q 001750 765 INQEELDDII 774 (1018)
Q Consensus 765 ~~~~el~~il 774 (1018)
++.++|..|+
T Consensus 780 Lt~eDmqfLF 789 (791)
T KOG1002|consen 780 LTEEDMQFLF 789 (791)
T ss_pred cCHHHHHHHh
Confidence 6667666554
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.4e-66 Score=584.39 Aligned_cols=470 Identities=29% Similarity=0.516 Sum_probs=387.4
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHhhc-CCCceEEEcCCCccHHHHHHHHHHHHhcC-----C----CCceEEEeCCccH
Q 001750 276 HSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGE-----R----ISPHLVVAPLSTL 345 (1018)
Q Consensus 276 ~~P~~~~~~~L~~yQ~egv~wl~~~~~-~~~~~ILaDemGlGKTiqai~~l~~l~~~-----~----~~p~LIV~P~s~l 345 (1018)
..|..+. ..|+|||..|+.||...-. .+.||||||+||||||+++|++|.+-... + ..++|||||.|++
T Consensus 317 e~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli 395 (901)
T KOG4439|consen 317 ETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLI 395 (901)
T ss_pred CCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHH
Confidence 3444433 5799999999999965433 46799999999999999999999876421 1 1279999999999
Q ss_pred HHHHHHHHHHc--CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh----
Q 001750 346 RNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---- 419 (1018)
Q Consensus 346 ~~W~~E~~~~~--p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~---- 419 (1018)
.||..|+++-. -.+.|.+|||+.. |.+ . .....+||||||||..+..
T Consensus 396 ~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~-------------------------~~~L~~YDvViTTY~lva~~~~~ 448 (901)
T KOG4439|consen 396 HQWEAEVARRLEQNALSVYLYHGPNK-REI-S-------------------------AKELRKYDVVITTYNLVANKPDD 448 (901)
T ss_pred HHHHHHHHHHHhhcceEEEEecCCcc-ccC-C-------------------------HHHHhhcceEEEeeeccccCCch
Confidence 99999998765 3479999999875 221 0 1124589999999999876
Q ss_pred ------ccccccCCcceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHH
Q 001750 420 ------DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 493 (1018)
Q Consensus 420 ------d~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~ 493 (1018)
....|..|.|..||+||||.+||.+++...++..+++..||+|||||+|||.-|+|+|+.||....|++...|.
T Consensus 449 e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wk 528 (901)
T KOG4439|consen 449 ELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWK 528 (901)
T ss_pred hhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHH
Confidence 24578889999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhh-----cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-------
Q 001750 494 EEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-----ELPPKKELILRVELSSKQKEYYKAILTRNYQILTR------- 561 (1018)
Q Consensus 494 ~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~-----~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~------- 561 (1018)
+....... ....++.-+.++.||||+|...-. .||++...++.++|+..+...|.-+.+....++.+
T Consensus 529 e~i~~~s~-~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~ 607 (901)
T KOG4439|consen 529 ENIDNMSK-GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQRED 607 (901)
T ss_pred HhccCccc-cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77754332 345667777899999999988765 79999999999999999999999887765554422
Q ss_pred ---cCC----------------------------c----chhHHHHHHHHHHhhCcccccCCCCCCc-----------cc
Q 001750 562 ---RGG----------------------------A----QISLINVVMELRKLCCHPYMLEGVEPDI-----------ED 595 (1018)
Q Consensus 562 ---~~~----------------------------~----~~~l~~~l~~Lrk~c~hP~l~~~~~~~~-----------~~ 595 (1018)
.++ . ...++.++++||++|+||-+.....+.. ..
T Consensus 608 ~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~ 687 (901)
T KOG4439|consen 608 RNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEE 687 (901)
T ss_pred hccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhh
Confidence 000 0 0125778999999999997664332100 00
Q ss_pred -----------------------------cHHHHHHHHhhhhHHHHHHHHHHHH-HHhCCeEEEEechhhHHHHHHHHHh
Q 001750 596 -----------------------------TNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDYLT 645 (1018)
Q Consensus 596 -----------------------------~~~~~~~li~~S~Kl~~L~klL~~l-~~~g~kvLIFsq~~~~ldiL~~~L~ 645 (1018)
....+-+....|.|+..+...+..+ .....|++|.||++.+|+++...|.
T Consensus 688 ~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~ 767 (901)
T KOG4439|consen 688 QLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQ 767 (901)
T ss_pred hhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHh
Confidence 0011122334688999888888877 5668899999999999999999999
Q ss_pred hCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCC
Q 001750 646 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1018)
Q Consensus 646 ~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k 725 (1018)
..|+.|..++|.+...+|+.+++.||....+.-|.|||..|||+||||..|+++|++|..|||+...||.+|++|+||+|
T Consensus 768 ~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK 847 (901)
T KOG4439|consen 768 KGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKK 847 (901)
T ss_pred hCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccccc---cCCCHHHHHHHH
Q 001750 726 KVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA---QNINQEELDDII 774 (1018)
Q Consensus 726 ~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~~~~---~~~~~~el~~il 774 (1018)
.|.||||+++||||++|...+.+|..|+..|+.+... ..++..+|..||
T Consensus 848 ~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 848 DVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLF 899 (901)
T ss_pred ceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHh
Confidence 9999999999999999999999999999999864433 334555555543
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-65 Score=656.93 Aligned_cols=473 Identities=43% Similarity=0.722 Sum_probs=410.6
Q ss_pred CCCCCChhHHHHHHHHHH-HhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC---CCceEEEeCCccHHHHHHHHHHHc
Q 001750 281 LSGGSLHPYQLEGLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWEREFATWA 356 (1018)
Q Consensus 281 ~~~~~L~~yQ~egv~wl~-~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l~~W~~E~~~~~ 356 (1018)
....+|++||++|++|+. ..+..+.++||||+||+|||+|+|+++.+++... .+|+|||||.+++.||.+|+.+|.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334789999999999999 7889999999999999999999999998865442 369999999999999999999999
Q ss_pred CCCe-EEEEecChHH----HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh---ccccccCCc
Q 001750 357 PQMN-VVMYVGTSQA----RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (1018)
Q Consensus 357 p~~~-vv~y~g~~~~----r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~---d~~~l~~i~ 428 (1018)
|.++ +..++|.... +..+.+..... . ...|++++|||+.+.. +...+..+.
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~v~itty~~l~~~~~~~~~l~~~~ 472 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKLH--------------------L-VIIFDVVITTYELLRRFLVDHGGLKKIE 472 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhhc--------------------c-cceeeEEechHHHHHHhhhhHHHHhhce
Confidence 9999 9999998763 44443321100 0 2358999999999999 999999999
Q ss_pred ceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHH-hhcCCCCC-ChHHHHHHHhchh------
Q 001750 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFG-SLEEFQEEFKDIN------ 500 (1018)
Q Consensus 429 w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~-fL~p~~~~-~~~~F~~~~~~~~------ 500 (1018)
|+++|+||||++||..+..++++..+++.++++|||||++|++.|||++++ |+.|..++ +...|...|....
T Consensus 473 ~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~ 552 (866)
T COG0553 473 WDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDI 552 (866)
T ss_pred eeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999 99999999 5588988886432
Q ss_pred -----hHHHHHHHHHHhhhHHHHHHHhh--HhhcCCCcEEEEEEecCCHHHHHHHHHHHH---HHHHHHHhc--CC----
Q 001750 501 -----QEEQISRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILT---RNYQILTRR--GG---- 564 (1018)
Q Consensus 501 -----~~~~~~~L~~~L~p~~lRR~k~d--v~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~---~~~~~l~~~--~~---- 564 (1018)
....+..|+.+++||++||+|.+ +...||++.+.++.|+|++.|..+|...+. ++...+... ..
T Consensus 553 ~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (866)
T COG0553 553 GPLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDEN 632 (866)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 12344558999999999999999 999999999999999999999999999999 666655442 11
Q ss_pred ----cchhHHHHHHHHHHhhCcccccCCC-CCCcc----------ccHHHHHHHHhhh-hHHHHHHHHH-HHHHHhCC--
Q 001750 565 ----AQISLINVVMELRKLCCHPYMLEGV-EPDIE----------DTNESFKQLLESS-GKLQLLDKMM-VKLKEQGH-- 625 (1018)
Q Consensus 565 ----~~~~l~~~l~~Lrk~c~hP~l~~~~-~~~~~----------~~~~~~~~li~~S-~Kl~~L~klL-~~l~~~g~-- 625 (1018)
....+++.++.||++|+||.++... +.... ........++..| +|+..+.++| ..++..|+
T Consensus 633 ~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~ 712 (866)
T COG0553 633 RIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYH 712 (866)
T ss_pred cccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccc
Confidence 2677899999999999999999765 22111 1111123466788 9999999999 89999999
Q ss_pred eEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCC
Q 001750 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD 705 (1018)
Q Consensus 626 kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~d 705 (1018)
|||||+||+.++++|+.+|...++.|.++||+++...|+.+|++||++ ...+||++|++|||.||||++|++||+||++
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~ 791 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPW 791 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccc
Confidence 999999999999999999999999999999999999999999999987 5667899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcc-c--cccCCCHHHHHHHHh
Q 001750 706 WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR-L--KAQNINQEELDDIIR 775 (1018)
Q Consensus 706 wNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~-~--~~~~~~~~el~~il~ 775 (1018)
|||+.+.||++|+|||||++.|.||++++++|+||+|++++..|+.+...+++. . ....++.+++..++.
T Consensus 792 wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 792 WNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFS 864 (866)
T ss_pred cChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999874 2 223456666666654
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-57 Score=491.22 Aligned_cols=409 Identities=27% Similarity=0.426 Sum_probs=328.3
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHHcCCCeE-EE
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNV-VM 363 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~~p~~~v-v~ 363 (1018)
.|.|||++||++. ...|++++||||||||||+|||++..+++.++ |.|||||.++...|..++.+|+|...- .+
T Consensus 198 ~LlPFQreGv~fa---L~RgGR~llADeMGLGKTiQAlaIA~yyraEw--plliVcPAsvrftWa~al~r~lps~~pi~v 272 (689)
T KOG1000|consen 198 RLLPFQREGVIFA---LERGGRILLADEMGLGKTIQALAIARYYRAEW--PLLIVCPASVRFTWAKALNRFLPSIHPIFV 272 (689)
T ss_pred hhCchhhhhHHHH---HhcCCeEEEecccccchHHHHHHHHHHHhhcC--cEEEEecHHHhHHHHHHHHHhcccccceEE
Confidence 5999999999875 47899999999999999999999999987775 999999999999999999999987544 22
Q ss_pred EecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccCc
Q 001750 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK 443 (1018)
Q Consensus 364 y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~ 443 (1018)
..+..+. .++ -....-|.|+||+++......|..-+|.+||+||+|.||+.
T Consensus 273 v~~~~D~----------~~~-------------------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~s 323 (689)
T KOG1000|consen 273 VDKSSDP----------LPD-------------------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDS 323 (689)
T ss_pred EecccCC----------ccc-------------------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhcc
Confidence 2222110 000 01223589999999999999999999999999999999999
Q ss_pred ccHHHHHHHhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchh---------hHHHHHHHHHHh
Q 001750 444 DSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---------QEEQISRLHRML 512 (1018)
Q Consensus 444 ~s~~~~~l~~l~--~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~---------~~~~~~~L~~~L 512 (1018)
.++..++...+. ..|.|||||||--..+.|||.++..+++..|+++.+|...|.+.. .-.+..+|+-+|
T Consensus 324 ktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 324 KTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred chhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHH
Confidence 999999888774 789999999999999999999999999999999999999997543 345678888888
Q ss_pred h-hHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCC
Q 001750 513 A-PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1018)
Q Consensus 513 ~-p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~ 591 (1018)
. ..|+||+|.+|+++|||| ...|.+...+.+-..-+.++..... +... + .|+-.+-|--
T Consensus 404 ~k~lMIRRlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~------~t~~---~-~~e~~~~~l~--------- 463 (689)
T KOG1000|consen 404 FKRLMIRRLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAAD------YTKV---N-SMERKHESLL--------- 463 (689)
T ss_pred HHHHHHHHHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhh------cchh---h-hhhhhhHHHH---------
Confidence 5 569999999999999999 4455555555554444444433222 0000 0 0000110000
Q ss_pred CccccHHHHHHHHhhhhHHHHHHHHHHH----HHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHH
Q 001750 592 DIEDTNESFKQLLESSGKLQLLDKMMVK----LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1018)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~----l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i 667 (1018)
..+. ...-.|+..+.+.|-. ..+.+.|+|||+++..+||-|+.++..+++.+.||||++++..|+.++
T Consensus 464 ------l~y~--~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 464 ------LFYS--LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred ------HHHH--HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 0000 1123466666665554 445678999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHH
Q 001750 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1018)
Q Consensus 668 ~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~ 747 (1018)
+.|+... ...|-+||..|+|+||+|++|+.|+|.+..|||...+||.+|+||+||+..|.||+|++++|+|+.++....
T Consensus 536 qsFQ~se-ev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 536 QSFQTSE-EVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHhcccc-ceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 9998754 444579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 001750 748 KKMVLEHLV 756 (1018)
Q Consensus 748 ~K~~l~~~v 756 (1018)
+|+.....+
T Consensus 615 ~KL~vl~s~ 623 (689)
T KOG1000|consen 615 QKLDVLGSV 623 (689)
T ss_pred HHHHHHhhc
Confidence 998754443
No 17
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=8.7e-57 Score=506.48 Aligned_cols=484 Identities=32% Similarity=0.502 Sum_probs=373.4
Q ss_pred CCChhHHHHHHHHHHH---------hhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeCCccHHHHHHHHH
Q 001750 284 GSLHPYQLEGLNFLRF---------SWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFA 353 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~---------~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~~W~~E~~ 353 (1018)
..|+|||+-||.||+. .-..|-|||||+.||||||+|+|+|+..++... .+.+|+|+|-.||.||..||.
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhh
Confidence 4699999999999843 234578999999999999999999999887764 458999999999999999999
Q ss_pred HHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc-------------
Q 001750 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------------- 420 (1018)
Q Consensus 354 ~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d------------- 420 (1018)
.|.|.+. .+... ..|.++.+.-+...+.... ..+.+..+ .-.-.|+++-|++++--
T Consensus 333 mWiP~y~-----sD~~v--rpR~F~vf~LnD~~KT~~~-Rakvi~~W---v~~GGVlLvGYemfRLL~lk~~~~~grpkk 401 (1387)
T KOG1016|consen 333 MWIPKYF-----SDTGV--RPRSFEVFLLNDGVKTFDQ-RAKVIEQW---VQTGGVLLVGYEMFRLLILKTLPKKGRPKK 401 (1387)
T ss_pred hhcCCCc-----ccCCC--ccceeEEEEecCchhhHHH-HHHHHHHH---hccCCEEEehHHHHHHHHHhcccccCCccc
Confidence 9998621 11111 1222222221111100000 00000001 11234778888776321
Q ss_pred -------------------------cccccCCcceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHH
Q 001750 421 -------------------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF 475 (1018)
Q Consensus 421 -------------------------~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~ 475 (1018)
...|-.-.-++||+||+||+||..+.++.+|+.+++++|+.|||-|+|||+.|+|
T Consensus 402 t~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYw 481 (1387)
T KOG1016|consen 402 TLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYW 481 (1387)
T ss_pred cccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHh
Confidence 1112222468999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCChHHHHHHHhchhh---------------HHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecC
Q 001750 476 MLMHFLDAGKFGSLEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 540 (1018)
Q Consensus 476 ~Ll~fL~p~~~~~~~~F~~~~~~~~~---------------~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~l 540 (1018)
.++.|+.|+.+++..+|.+.|..... .....-||.+|..|+-||+-.-+.+-||.+.|+++.|.|
T Consensus 482 CMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~ 561 (1387)
T KOG1016|consen 482 CMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRK 561 (1387)
T ss_pred hhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeH
Confidence 99999999999999999999964321 123456999999999999999888899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccC---------------------------------
Q 001750 541 SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE--------------------------------- 587 (1018)
Q Consensus 541 s~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~--------------------------------- 587 (1018)
|..|+++|+.++......+...+-...+.+....-..|+.|||-.+-
T Consensus 562 s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~ 641 (1387)
T KOG1016|consen 562 SQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNS 641 (1387)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCC
Confidence 99999999998865544433222221122222333345558885320
Q ss_pred -CCCC--------------------------------CccccHH--------HHHHHHhhhhHHHHHHHHHHHHHHhCCe
Q 001750 588 -GVEP--------------------------------DIEDTNE--------SFKQLLESSGKLQLLDKMMVKLKEQGHR 626 (1018)
Q Consensus 588 -~~~~--------------------------------~~~~~~~--------~~~~li~~S~Kl~~L~klL~~l~~~g~k 626 (1018)
...+ ++....+ .....+..+.|+.++.+++..-..-|.+
T Consensus 642 ~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~k 721 (1387)
T KOG1016|consen 642 IPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEK 721 (1387)
T ss_pred CCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCce
Confidence 0000 0000000 0122355678888888888888888999
Q ss_pred EEEEechhhHHHHHHHHHhhC------------------CCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeeccccc
Q 001750 627 VLIYSQFQHMLDLLEDYLTFK------------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (1018)
Q Consensus 627 vLIFsq~~~~ldiL~~~L~~~------------------g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg 688 (1018)
+|||||....||+|+.+|..+ ..+|.|+||.+++.+|.++|++||.+.+-...|||||+||.
T Consensus 722 il~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~ 801 (1387)
T KOG1016|consen 722 ILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGS 801 (1387)
T ss_pred EEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcccc
Confidence 999999999999999999653 34689999999999999999999998888888999999999
Q ss_pred ccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcccc-ccCCCH
Q 001750 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-AQNINQ 767 (1018)
Q Consensus 689 ~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~~~-~~~~~~ 767 (1018)
.||||-+|+.+||||--|||..+.||..|++|.||+|++.|||||+.+|+|.+|+.++-.|.++.+.|++... ..+++.
T Consensus 802 lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~ 881 (1387)
T KOG1016|consen 802 LGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQ 881 (1387)
T ss_pred ccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 357999
Q ss_pred HHHHHHHhhch
Q 001750 768 EELDDIIRYGS 778 (1018)
Q Consensus 768 ~el~~il~~g~ 778 (1018)
.|++.||.+..
T Consensus 882 Ke~enLl~~~e 892 (1387)
T KOG1016|consen 882 KELENLLMYDE 892 (1387)
T ss_pred HHHHHHhhhhh
Confidence 99999997753
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.2e-54 Score=531.42 Aligned_cols=416 Identities=19% Similarity=0.282 Sum_probs=320.8
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeCCccHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv 362 (1018)
..|.|||+..+..+... ...++|||||||||||++|++++..+...+ .+|+|||||.+++.||..|+.+|+ ++...
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 46999999998776443 467899999999999999999999886654 469999999999999999999887 56777
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc---ccccCCcceEEEEccccc
Q 001750 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (1018)
Q Consensus 363 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~---~~l~~i~w~~lIvDEaHr 439 (1018)
+|.+...... . .+ .......++++|+||+.+..+. ..+....|++|||||||+
T Consensus 228 i~~~~~~~~~-------~-~~----------------~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 228 LFDEERYAEA-------Q-HD----------------ADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred EEcCcchhhh-------c-cc----------------ccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 7765532210 0 00 0011235789999999998754 346677999999999999
Q ss_pred ccC---cccHHHHHHHhc--ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchh--------------
Q 001750 440 LKN---KDSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------------- 500 (1018)
Q Consensus 440 lKn---~~s~~~~~l~~l--~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~-------------- 500 (1018)
+++ ..|+.++.+..+ +++++|||||||+||++.|+|++|+||+|+.|+++..|.++.....
T Consensus 284 lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 284 LVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred hccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 995 356778888877 4679999999999999999999999999999999999986442100
Q ss_pred -hHHHHHHHHHH---------------------------h---------hhHHHHHHHhhHhhcCCCcEEEEEEecCCHH
Q 001750 501 -QEEQISRLHRM---------------------------L---------APHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1018)
Q Consensus 501 -~~~~~~~L~~~---------------------------L---------~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~ 543 (1018)
.......|..+ + .+.|+|+++++|. .+|++....+.++|.+.
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ 442 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH
Confidence 01111122111 1 1567788998876 68999999999999664
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCccc-ccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001750 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY-MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (1018)
Q Consensus 544 Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~-l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~ 622 (1018)
|........ ...++++ .+|. ++.... ....-...++|+..|.++|..+.
T Consensus 443 ----y~~~~~~~~----------------~~~~~~~-l~pe~~~~~~~--------~~~~~~~~d~Ki~~L~~~L~~~~- 492 (956)
T PRK04914 443 ----YQTAIKVSL----------------EARARDM-LYPEQIYQEFE--------DNATWWNFDPRVEWLIDFLKSHR- 492 (956)
T ss_pred ----HHHHHHHhH----------------HHHHHhh-cCHHHHHHHHh--------hhhhccccCHHHHHHHHHHHhcC-
Confidence 332221100 0111221 1221 000000 00112335689999999887653
Q ss_pred hCCeEEEEechhhHHHHHHHHH-hhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEE
Q 001750 623 QGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1018)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L-~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi 701 (1018)
+.||||||++..+++.|.+.| ...|+++..++|+++..+|+++++.|++++.+ ..+||+|.+||+|+||+.|++||+
T Consensus 493 -~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~-~~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 493 -SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG-AQVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred -CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC-ccEEEechhhccCCCcccccEEEE
Confidence 789999999999999999999 56799999999999999999999999875422 347999999999999999999999
Q ss_pred EcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcc
Q 001750 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR 759 (1018)
Q Consensus 702 ~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~ 759 (1018)
||.||||..++||+||+||+||++.|.||.+++++|+++.|++...+|+.+...+++.
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC
Confidence 9999999999999999999999999999999999999999999999999887777654
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.3e-49 Score=470.88 Aligned_cols=437 Identities=30% Similarity=0.491 Sum_probs=357.4
Q ss_pred hHHHHHHHHHHHh-hcCCCceEEEcCCCccHHHHHHHHHHHHhcCCC--------CceEEEeCCccHHHHHHHHHHHc--
Q 001750 288 PYQLEGLNFLRFS-WSKQTHVILADEMGLGKTIQSIAFLASLFGERI--------SPHLVVAPLSTLRNWEREFATWA-- 356 (1018)
Q Consensus 288 ~yQ~egv~wl~~~-~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~--------~p~LIV~P~s~l~~W~~E~~~~~-- 356 (1018)
.+|..+-.|+... +..-.+||+||+||+|||+++|+++........ +..|||||.+++.||..|+.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 5666665555333 344678999999999999999999876543322 37899999999999999996665
Q ss_pred CCCeEEEEec-ChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEc
Q 001750 357 PQMNVVMYVG-TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1018)
Q Consensus 357 p~~~vv~y~g-~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvD 435 (1018)
..+.+.+|+| ..+. ....+++||||||.++.. ..+..+.|-.+|+|
T Consensus 215 ~~l~v~v~~gr~kd~-------------------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riild 261 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLD 261 (674)
T ss_pred cceEEEEeccccccc-------------------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEec
Confidence 3577888888 2211 123577899999999976 67777999999999
Q ss_pred ccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhh----HHHHHHHHHH
Q 001750 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ----EEQISRLHRM 511 (1018)
Q Consensus 436 EaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~----~~~~~~L~~~ 511 (1018)
|||.++|.+++.++++..+.+.+||.|||||+||++.|||+++.|+.-+.+.....|...+..... ...+..++.+
T Consensus 262 ea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~ 341 (674)
T KOG1001|consen 262 EAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGI 341 (674)
T ss_pred cccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888877754322 3567888999
Q ss_pred hhhHHHHHHHhhH-----hhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhc------CCcchhHHHHHHHHHHhh
Q 001750 512 LAPHLLRRVKKDV-----MKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLC 580 (1018)
Q Consensus 512 L~p~~lRR~k~dv-----~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~------~~~~~~l~~~l~~Lrk~c 580 (1018)
|.++++||+|..- .-.+||+...++.+.++..++.+|+.+........... ..+...++..+.+||++|
T Consensus 342 L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c 421 (674)
T KOG1001|consen 342 LKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQAC 421 (674)
T ss_pred HHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHc
Confidence 9999999999632 33689999999999999999999999887765544321 223455677778899999
Q ss_pred CcccccCCCCCCcc----cc--------------------------------------------------------HHHH
Q 001750 581 CHPYMLEGVEPDIE----DT--------------------------------------------------------NESF 600 (1018)
Q Consensus 581 ~hP~l~~~~~~~~~----~~--------------------------------------------------------~~~~ 600 (1018)
+||.++........ .. ....
T Consensus 422 ~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 422 DHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 99987632110000 00 0000
Q ss_pred HHHHh-------------hhhHHHHHHHHHHHHHHhCC-eEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHH
Q 001750 601 KQLLE-------------SSGKLQLLDKMMVKLKEQGH-RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1018)
Q Consensus 601 ~~li~-------------~S~Kl~~L~klL~~l~~~g~-kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~ 666 (1018)
..++. .|.|+..+.++|........ +++||||++.++++++..|...++.+.+++|.++...|.+.
T Consensus 502 ~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 502 KKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred HHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhh
Confidence 11122 27788888888885544445 99999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHH
Q 001750 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1018)
Q Consensus 667 i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~ 746 (1018)
+..|+. +...-+.|+|.+|||.|+||+.|++||++||.|||....||+.||||+||+++|.|+||++++|+||+|+.++
T Consensus 582 ~~~~~~-~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 582 FTDFPC-DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hccccc-CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 999994 4455568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 001750 747 KKKMVLEHLVVG 758 (1018)
Q Consensus 747 ~~K~~l~~~v~~ 758 (1018)
++|..+.....+
T Consensus 661 ~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 661 EKKREYNASAFG 672 (674)
T ss_pred HHHHHHHhhhcc
Confidence 999988777654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=6.2e-42 Score=382.84 Aligned_cols=272 Identities=42% Similarity=0.704 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHhh---------cCCCceEEEcCCCccHHHHHHHHHHHHhcCCC----CceEEEeCCccHHHHHHHHHHH
Q 001750 289 YQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLRNWEREFATW 355 (1018)
Q Consensus 289 yQ~egv~wl~~~~---------~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~----~p~LIV~P~s~l~~W~~E~~~~ 355 (1018)
||++||+||+..+ ...+++||||+||+|||+++++++.++..... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 78899999999999999999999998876543 2699999999999999999999
Q ss_pred c-C-CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHh-----hccccccCCc
Q 001750 356 A-P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-----LDSASLKPIK 428 (1018)
Q Consensus 356 ~-p-~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~-----~d~~~l~~i~ 428 (1018)
+ | ++++++|.|....+.. .......++++||||+.+. .....+..++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~ 134 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL--------------------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIK 134 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT--------------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSE
T ss_pred cccccccccccccccccccc--------------------------cccccccceeeecccccccccccccccccccccc
Confidence 9 4 6899999888722211 0112357899999999999 6677888899
Q ss_pred ceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhc---hhhHHHH
Q 001750 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQI 505 (1018)
Q Consensus 429 w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~---~~~~~~~ 505 (1018)
|++|||||+|++||..+..++++..+.+.++|+|||||++|++.|||++++||.|+.+.+...|.+.|.. .......
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~ 214 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI 214 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH
T ss_pred ceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988843 3456778
Q ss_pred HHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC----CcchhHHHHHHHHHHhhC
Q 001750 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG----GAQISLINVVMELRKLCC 581 (1018)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~----~~~~~l~~~l~~Lrk~c~ 581 (1018)
..|..+++++++||+++++...+|+..+.++.|+||+.|+..|+.+.......+.... +....++..+++||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 8999999999999999999889999999999999999999999998887766554433 335678899999999999
Q ss_pred ccccc
Q 001750 582 HPYML 586 (1018)
Q Consensus 582 hP~l~ 586 (1018)
||+|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99974
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.8e-38 Score=378.03 Aligned_cols=342 Identities=15% Similarity=0.258 Sum_probs=255.9
Q ss_pred CCCChhHHHHHHHHHHHhhcCC--CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCcc-HHHHHHHHHHHc--C
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWA--P 357 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~--~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~~W~~E~~~~~--p 357 (1018)
..+|||||.++++++. .++ ++|||..+||+|||+++++++..+ .+++|||||.++ +.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~---~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHH---hcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 4689999999998773 333 589999999999999999988775 258999999765 789999999997 3
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----------cccccCC
Q 001750 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPI 427 (1018)
Q Consensus 358 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d----------~~~l~~i 427 (1018)
...+..|+|....+ ......|+||||+++... ...|...
T Consensus 326 ~~~I~~~tg~~k~~-------------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~ 374 (732)
T TIGR00603 326 DSQICRFTSDAKER-------------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNR 374 (732)
T ss_pred CceEEEEecCcccc-------------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccc
Confidence 45666777653221 012357999999998643 1245556
Q ss_pred cceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHh-hcCCCCCChHHHHHHHhchhhHHHHH
Q 001750 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHF-LDAGKFGSLEEFQEEFKDINQEEQIS 506 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~f-L~p~~~~~~~~F~~~~~~~~~~~~~~ 506 (1018)
.|++||+||||++.+ ....+.+..+.+.+||+|||||++++- .+..+.+ +.|..+.
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye------------------- 431 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE------------------- 431 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee-------------------
Confidence 899999999999954 345556777889999999999998762 2333333 3343322
Q ss_pred HHHHHhhhHHHHHHHhhHh--hcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCccc
Q 001750 507 RLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1018)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~--~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~ 584 (1018)
-...++. ..|.+.....|+|+|++.....|.. ... . .+...
T Consensus 432 ------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~---~~~---------~---------~k~~l---- 474 (732)
T TIGR00603 432 ------------ANWMELQKKGFIANVQCAEVWCPMTPEFYREYLR---ENS---------R---------KRMLL---- 474 (732)
T ss_pred ------------cCHHHHHhCCccccceEEEEEecCCHHHHHHHHH---hcc---------h---------hhhHH----
Confidence 1111111 2567777889999999875444421 100 0 00000
Q ss_pred ccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHH
Q 001750 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1018)
Q Consensus 585 l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq 664 (1018)
...+..|+..+..++......|+|+||||+++..++.+...|. . ..|+|.++..+|+
T Consensus 475 ------------------~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 475 ------------------YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---K--PFIYGPTSQQERM 531 (732)
T ss_pred ------------------hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC---C--ceEECCCCHHHHH
Confidence 0124578999999988776789999999999998888888773 3 4589999999999
Q ss_pred HHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCC-CcchHHHHHHHHHhhCCCCc-----EEEEEEeeCCCH
Q 001750 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNK-----VMIFRLITRGSI 738 (1018)
Q Consensus 665 ~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dw-Np~~~~Qa~gR~hRiGQ~k~-----V~Iyrlvt~~Tv 738 (1018)
+++++|++++ .+.+|++|++|++||||+.|++||++++++ |+..++||+||+.|.+..+. ..+|.||+++|.
T Consensus 532 ~il~~Fr~~~--~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 532 QILQNFQHNP--KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHhCC--CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999997532 334688889999999999999999999986 99999999999999987653 789999999999
Q ss_pred HHHHHHHHH
Q 001750 739 EERMMQMTK 747 (1018)
Q Consensus 739 Ee~i~~~~~ 747 (1018)
|+....+.+
T Consensus 610 E~~~s~~Rq 618 (732)
T TIGR00603 610 EMYYSTKRQ 618 (732)
T ss_pred HHHHHHHHH
Confidence 998765443
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.5e-34 Score=360.35 Aligned_cols=429 Identities=17% Similarity=0.210 Sum_probs=283.1
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcC--CCe
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p--~~~ 360 (1018)
.++|+||.+.+..+. .+++|++++||+|||++++.++..++....+++|||||+ .+..||..++.+++. ..+
T Consensus 14 ~~~r~yQ~~~~~~~l-----~~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 14 IEARLYQQLLAATAL-----KKNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CCccHHHHHHHHHHh-----cCCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 578999999887652 238999999999999999988887775555699999997 677899999998863 347
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcccc
Q 001750 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 361 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~lIvDEaH 438 (1018)
++.++|......... . ....+|+++|++.+..+. ..+..-.|++|||||||
T Consensus 89 v~~~~g~~~~~~r~~---~------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 89 IVVFTGEVSPEKRAE---L------------------------WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEEEeCCCCHHHHHH---H------------------------HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 888888654322110 1 124579999999997653 33444478999999999
Q ss_pred cccCcccHHHHHHHhc---ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChH----HHHHHHh-------chhhHHH
Q 001750 439 RLKNKDSKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE----EFQEEFK-------DINQEEQ 504 (1018)
Q Consensus 439 rlKn~~s~~~~~l~~l---~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~----~F~~~~~-------~~~~~~~ 504 (1018)
++.+..+..+.+-.-. ...++++|||||.++ ...+..+++-|......... .....+. ...-...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH
Confidence 9987665444332222 245689999999765 56677777766533322111 1111111 1222355
Q ss_pred HHHHHHHhhhHHHHHHHhhHhhc-CCCcEEEEEEecCCHHHHHHHHHHHHHHH---HHHH---------h-----cCCcc
Q 001750 505 ISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNY---QILT---------R-----RGGAQ 566 (1018)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~~-lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~---~~l~---------~-----~~~~~ 566 (1018)
+..++..|.+++.++.+...... .++....+...++...++.+++.+..... ..+. . .....
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 67788888888888777644222 22222112222233333333322211000 0000 0 00011
Q ss_pred hhHHHHHHHHHHhhCcccccCCCCCCcccc------HHHHHHHHhhhhHHHHHHHHHHHHH--HhCCeEEEEechhhHHH
Q 001750 567 ISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLD 638 (1018)
Q Consensus 567 ~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~------~~~~~~li~~S~Kl~~L~klL~~l~--~~g~kvLIFsq~~~~ld 638 (1018)
..+...+..++....++-..... ...... ......+...++|+..|.++|.... ..+.|+||||++..+.+
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKAS-KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAE 379 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHH-HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 12222222222221111000000 000000 0011222345789999999998876 46889999999999999
Q ss_pred HHHHHHhhCCCcEEEEeCC--------CChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcch
Q 001750 639 LLEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 710 (1018)
Q Consensus 639 iL~~~L~~~g~~~~rldG~--------~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~ 710 (1018)
.|.++|...|+++.+++|. ++..+|+.++++|+++. +.+|++|.++++|+|++.+++||+||++|||..
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~---~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r 456 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE---FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIR 456 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC---CCEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 9999999999999999997 78889999999998753 458999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHH
Q 001750 711 DLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 752 (1018)
Q Consensus 711 ~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l 752 (1018)
++|+.||++|.|+ +.||.|++++|+||.++....+|...
T Consensus 457 ~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~ 495 (773)
T PRK13766 457 SIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKK 495 (773)
T ss_pred HHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHH
Confidence 9998888888765 77899999999999988766555443
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.98 E-value=1.4e-31 Score=320.93 Aligned_cols=256 Identities=25% Similarity=0.457 Sum_probs=199.0
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHh------------cCC-----CCceEEEeCCccHHHHHHHHHHHcCCC-eEEE
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLF------------GER-----ISPHLVVAPLSTLRNWEREFATWAPQM-NVVM 363 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~------------~~~-----~~p~LIV~P~s~l~~W~~E~~~~~p~~-~vv~ 363 (1018)
..|..+++|||||+|||...++....-. ..+ .|.+|||||.+++.||-.||.++++.. +|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 3456789999999999998877654322 111 257999999999999999999999876 9999
Q ss_pred EecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----------------------c
Q 001750 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------------------S 421 (1018)
Q Consensus 364 y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d----------------------~ 421 (1018)
|-|....-. ........+|||+|||++++.+ .
T Consensus 452 Y~Girk~~~--------------------------~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 452 YFGIRKTFW--------------------------LSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred Eechhhhcc--------------------------cCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCC
Confidence 999754321 0112456899999999999765 2
Q ss_pred ccccCCcceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchh-
Q 001750 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN- 500 (1018)
Q Consensus 422 ~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~- 500 (1018)
..|..+.|-.|+|||||-+....|...+.+..+.+.++|++||||+|+ +.+||.||.||...+|.....|.+.....-
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 335557899999999999999999999999999999999999999999 999999999999999999998877654322
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhHhhc--CCCcEEEEEEecCCHHHHHHHHHH----HHHHH---HHHHhc-----C-C-
Q 001750 501 QEEQISRLHRMLAPHLLRRVKKDVMKE--LPPKKELILRVELSSKQKEYYKAI----LTRNY---QILTRR-----G-G- 564 (1018)
Q Consensus 501 ~~~~~~~L~~~L~p~~lRR~k~dv~~~--lP~k~e~iv~v~ls~~Q~~~Y~~i----l~~~~---~~l~~~-----~-~- 564 (1018)
.......+++++...+-|+.|.+|... +||-.+.+.+..+++.+..+|+.. ..... ..+.+. . +
T Consensus 585 ~ra~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~ 664 (1394)
T KOG0298|consen 585 LRAKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLA 664 (1394)
T ss_pred HHhhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccc
Confidence 113345678888999999999988764 689888888899999988777754 22222 222211 1 0
Q ss_pred -----cchhHHHHHHHHHHhhCccc
Q 001750 565 -----AQISLINVVMELRKLCCHPY 584 (1018)
Q Consensus 565 -----~~~~l~~~l~~Lrk~c~hP~ 584 (1018)
....+.+.+.+||++|+||-
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPL 689 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhcccc
Confidence 12457888999999999994
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.1e-30 Score=285.84 Aligned_cols=420 Identities=17% Similarity=0.201 Sum_probs=267.3
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHc--CCCe
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~--p~~~ 360 (1018)
.+.|.||+.-+.-. -.+|++++.+||||||++|+.++...+....+.+|+++|+ -++.|-..-+.+.+ |.-.
T Consensus 14 ie~R~YQ~~i~a~a-----l~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKA-----LFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHH-----hhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 46899999876433 2359999999999999999999987777666699999995 67788888888877 6678
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcccc
Q 001750 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 361 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~lIvDEaH 438 (1018)
++.++|.-..... .. .+.+..|++.|++++.+|. ..+..-.+.++|+||||
T Consensus 89 i~~ltGev~p~~R--~~-------------------------~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 89 IAALTGEVRPEER--EE-------------------------LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred eeeecCCCChHHH--HH-------------------------HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh
Confidence 8899886443211 11 1235579999999998874 34555578999999999
Q ss_pred cccCcccHHHHH--HHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCC----ChHHHHHHHh-------chhhHHH
Q 001750 439 RLKNKDSKLFSS--LKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG----SLEEFQEEFK-------DINQEEQ 504 (1018)
Q Consensus 439 rlKn~~s~~~~~--l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~----~~~~F~~~~~-------~~~~~~~ 504 (1018)
|.-++.+-.+-+ ..... ..+.|+||||| -++.+.+...++-|..+... ...+-..... ...-...
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 998877654433 23333 34789999999 45566666666666544321 1111111110 1111223
Q ss_pred HHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC-C-------------------
Q 001750 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG-G------------------- 564 (1018)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~-~------------------- 564 (1018)
+..+.+.|+..+-.|++.--. ...+....+ -.++.+.... .+........ .
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~-----~g~~~~~~~--~~~kdl~~~~--~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~ 291 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKE-----LGVIESSSP--VSKKDLLELR--QIRLIMAKNEDSDKFRLLSVLAEAIKLAHAL 291 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----cCceeccCc--ccHhHHHHHH--HHHHHhccCccHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322222221110 011111111 1122222222 0000000000 0
Q ss_pred ------cchhHHHHHHHHHHhhCcccccCCCCCCc---cccHHHHHHHH------hhhhHHHHHHHHHHHHH--HhCCeE
Q 001750 565 ------AQISLINVVMELRKLCCHPYMLEGVEPDI---EDTNESFKQLL------ESSGKLQLLDKMMVKLK--EQGHRV 627 (1018)
Q Consensus 565 ------~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~---~~~~~~~~~li------~~S~Kl~~L~klL~~l~--~~g~kv 627 (1018)
+...+.+.+.+|..-+.. -.... ...+ .....++..++ -..+||..+.+++.... ..+.||
T Consensus 292 elletqGi~~~~~Yl~~l~e~~~~-~~sk~-a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~Rv 369 (542)
T COG1111 292 ELLETQGIRPFYQYLEKLEEEATK-GGSKA-AKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRV 369 (542)
T ss_pred HHHHhhChHHHHHHHHHHHHHhcc-cchHH-HHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceE
Confidence 000111111111111110 00000 0000 00001111111 13679999999998876 557899
Q ss_pred EEEechhhHHHHHHHHHhhCCCcEE-EEeC--------CCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCE
Q 001750 628 LIYSQFQHMLDLLEDYLTFKKWQYE-RIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT 698 (1018)
Q Consensus 628 LIFsq~~~~ldiL~~~L~~~g~~~~-rldG--------~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~ 698 (1018)
|||+++..+.+.|.++|...|.+.. ++-| ++++.+..++|+.|.++. +.+|++|..|.+|||++++|.
T Consensus 370 IVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge---~nVLVaTSVgEEGLDIp~vDl 446 (542)
T COG1111 370 IVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE---YNVLVATSVGEEGLDIPEVDL 446 (542)
T ss_pred EEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCC---ceEEEEcccccccCCCCcccE
Confidence 9999999999999999999988876 6666 477888899999997644 458999999999999999999
Q ss_pred EEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 001750 699 VIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1018)
Q Consensus 699 VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~ 753 (1018)
||+|||.-+|...+||+||.+| ++.-.||-|+++||-||.-+..+.+|..-.
T Consensus 447 VifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m 498 (542)
T COG1111 447 VIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKM 498 (542)
T ss_pred EEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 477889999999999999999988886543
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.6e-28 Score=287.30 Aligned_cols=362 Identities=20% Similarity=0.281 Sum_probs=266.9
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCC-e
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM-N 360 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~-~ 360 (1018)
..+|||||.++++-+...+..++.+++...+|.|||+.++.++..+.. ++|||||. .++.||...+.+++... .
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 367999999999776666666889999999999999999999988744 49999995 66799998888877432 2
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhccccCcccccccccccc-ccEEEccHHHHhhcc--ccccCCcceEEEEccc
Q 001750 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIK-FDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1018)
Q Consensus 361 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~VvitTye~l~~d~--~~l~~i~w~~lIvDEa 437 (1018)
+-.|.|.... .. ..|.|+||+++.+.. ..+..-.|++||+|||
T Consensus 110 ~g~~~~~~~~----------------------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 110 IGIYGGGEKE----------------------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred cceecCceec----------------------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 3333333211 11 469999999998863 3333337999999999
Q ss_pred ccccCcccHHHHHHHhccccc-EEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhHH
Q 001750 438 HRLKNKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1018)
Q Consensus 438 HrlKn~~s~~~~~l~~l~~~~-rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~ 516 (1018)
|++.....+. .+..+...+ +|+|||||.......+..+..++.| ..
T Consensus 156 Hh~~a~~~~~--~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~-------------------------------~v 202 (442)
T COG1061 156 HHLPAPSYRR--ILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGP-------------------------------IV 202 (442)
T ss_pred ccCCcHHHHH--HHHhhhcccceeeeccCceeecCCchhHHHHhcCC-------------------------------eE
Confidence 9986544332 333444455 9999999964432222222222222 22
Q ss_pred HHHHHhhHh--hcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCcc
Q 001750 517 LRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1018)
Q Consensus 517 lRR~k~dv~--~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~ 594 (1018)
......+.+ ..|.|.....+.+.++......|.....+....+..... . .
T Consensus 203 y~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~------~----------------------~ 254 (442)
T COG1061 203 YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT------L----------------------R 254 (442)
T ss_pred eecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh------h----------------------h
Confidence 222222222 358889999999999999998888776665544432221 0 0
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCC
Q 001750 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1018)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~ 674 (1018)
..............|+..+..++.... .+.+++||+..+...+.+...+...|+ ...++|.++..+|.++++.|..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 011112233345678888888888766 789999999999999999999998888 999999999999999999998755
Q ss_pred CCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHh-hCCCCc--EEEEEEeeCCCHHHHHHHHHHH
Q 001750 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR-LGQTNK--VMIFRLITRGSIEERMMQMTKK 748 (1018)
Q Consensus 675 s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hR-iGQ~k~--V~Iyrlvt~~TvEe~i~~~~~~ 748 (1018)
+.+|++++.+++|+|++.|+++|+..|.-++..++|++||+.| ...++. +..|-+++..+.+..+......
T Consensus 333 ---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 333 ---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 5589999999999999999999999999999999999999999 444444 7788888888888877665543
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=4.8e-28 Score=288.70 Aligned_cols=338 Identities=16% Similarity=0.202 Sum_probs=230.6
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHc--CCC
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~--p~~ 359 (1018)
..+|||||.+++.-+ ..+.++||...||+|||++++.++..+...+.+++||+||+ .++.||.++|.+|. |..
T Consensus 112 ~~~~r~~Q~~av~~~----l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEG----LKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHH----HhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 368999999998654 24677899999999999998777665555555599999996 77799999999976 322
Q ss_pred eEE-EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccc
Q 001750 360 NVV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 360 ~vv-~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaH 438 (1018)
.+. ++.|... ....+|+|+|++.+......+ --.+++|||||||
T Consensus 188 ~~~~i~~g~~~----------------------------------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH 232 (501)
T PHA02558 188 AMHKIYSGTAK----------------------------------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECH 232 (501)
T ss_pred ceeEEecCccc----------------------------------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchh
Confidence 232 2222210 124579999999987543221 1267899999999
Q ss_pred cccCcccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhHHH
Q 001750 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1018)
Q Consensus 439 rlKn~~s~~~~~l~~l-~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~l 517 (1018)
++... .+...+..+ .+.++++|||||-..... ...+..++.|-... .. ..++ +
T Consensus 233 ~~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~-~~~~~~~fG~i~~~-----------v~----~~~l---i----- 286 (501)
T PHA02558 233 LFTGK--SLTSIITKLDNCKFKFGLTGSLRDGKAN-ILQYVGLFGDIFKP-----------VT----TSQL---M----- 286 (501)
T ss_pred cccch--hHHHHHHhhhccceEEEEeccCCCcccc-HHHHHHhhCCceEE-----------ec----HHHH---H-----
Confidence 99753 344555666 467899999999533211 11111222221100 00 0000 0
Q ss_pred HHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCccccH
Q 001750 518 RRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTN 597 (1018)
Q Consensus 518 RR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~~ 597 (1018)
+ ...+.+.....+.+..++.....+. . ....
T Consensus 287 ---~---~g~l~~~~~~~v~~~~~~~~~~~~~-------------~------------------------------~~~~ 317 (501)
T PHA02558 287 ---E---EGQVTDLKINSIFLRYPDEDRVKLK-------------G------------------------------EDYQ 317 (501)
T ss_pred ---h---CCCcCCceEEEEeccCCHHHhhhhc-------------c------------------------------cchH
Confidence 0 0122233333444444332111000 0 0000
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCc
Q 001750 598 ESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSR 677 (1018)
Q Consensus 598 ~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~ 677 (1018)
..+..+.....+..++.+++..+.+.|+++|||+..+...+.|.+.|...|+++..++|+++.++|..+++.|+.+. .
T Consensus 318 ~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~ 395 (501)
T PHA02558 318 EEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--G 395 (501)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--C
Confidence 11222333455667777888888888999999999999999999999999999999999999999999999997532 2
Q ss_pred eEEEeec-ccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCC-cEEEEEEeeCCC
Q 001750 678 FCFLLST-RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGS 737 (1018)
Q Consensus 678 ~v~Llst-ragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k-~V~Iyrlvt~~T 737 (1018)
.+||+| +..|+|+|++.+|+||+++|.-+...++|++||++|.|..| .+.||.++..-.
T Consensus 396 -~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 396 -IIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred -eEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 345555 99999999999999999999999999999999999998765 689999996433
No 27
>PTZ00110 helicase; Provisional
Probab=99.93 E-value=8.1e-24 Score=254.27 Aligned_cols=318 Identities=17% Similarity=0.244 Sum_probs=215.2
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHH-HHHHHHhcC-----CCC-ceEEEeCC-ccHHHHHHHHHHHc
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-----RIS-PHLVVAPL-STLRNWEREFATWA 356 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai-~~l~~l~~~-----~~~-p~LIV~P~-s~l~~W~~E~~~~~ 356 (1018)
++.|+|.+++..+ ..++++|+..++|+|||++.+ ..+..+... ..+ .+|||||+ .+..|+..++.++.
T Consensus 152 ~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 5889999998765 578999999999999999864 444444432 123 47999996 56688999999887
Q ss_pred CC--CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEE
Q 001750 357 PQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1018)
Q Consensus 357 p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~l 432 (1018)
.. +++.+.+|.......+... ....+|+|+|++.+.... ..+..-...+|
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~l--------------------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYAL--------------------------RRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHHH--------------------------HcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 43 5566666554433322221 124689999998875432 11222346789
Q ss_pred EEcccccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHH
Q 001750 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1018)
Q Consensus 433 IvDEaHrlKn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1018)
||||||++.... ..+...+..+. ....+++|||.- .++-.+...
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~~----------------------------- 328 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLARD----------------------------- 328 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHHH-----------------------------
Confidence 999999987543 23444455554 345688999951 111111100
Q ss_pred HHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCC
Q 001750 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1018)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~ 589 (1018)
++ ..-| ..+.+.... .... . .++ +.+.
T Consensus 329 -----l~---------~~~~----v~i~vg~~~--l~~~----------------~---------~i~----q~~~---- 355 (545)
T PTZ00110 329 -----LC---------KEEP----VHVNVGSLD--LTAC----------------H---------NIK----QEVF---- 355 (545)
T ss_pred -----Hh---------ccCC----EEEEECCCc--cccC----------------C---------Cee----EEEE----
Confidence 00 0000 001110000 0000 0 000 0000
Q ss_pred CCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHH
Q 001750 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
.+....|...|..+|..+...+.++|||++.....+.|...|...|++...++|.++..+|..+++.
T Consensus 356 -------------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~ 422 (545)
T PTZ00110 356 -------------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNE 422 (545)
T ss_pred -------------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHH
Confidence 0112345666777777776678899999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
|.++.. .+||+|.++++|||++.+++||+||+++++..++|++||++|.|.+-. +|-|++.+
T Consensus 423 F~~G~~---~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 423 FKTGKS---PIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred HhcCCC---cEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 976443 489999999999999999999999999999999999999999997644 45666664
No 28
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.92 E-value=1.3e-22 Score=238.80 Aligned_cols=421 Identities=19% Similarity=0.231 Sum_probs=243.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCC-CceEEEeCCc-cHHHHHHHHHHHcCCCeE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPLS-TLRNWEREFATWAPQMNV 361 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~-~p~LIV~P~s-~l~~W~~E~~~~~p~~~v 361 (1018)
..||+||.+-+.-. - ++|+|+|.+||+|||.+|+.++...++..+ ++++++||+. ++.|....|...+-.-.+
T Consensus 61 ~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred ccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 57999999987543 3 899999999999999999888877766544 5999999975 456666777776633455
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccccc--C-CcceEEEEcccc
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLK--P-IKWQCMIVDEGH 438 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~--~-i~w~~lIvDEaH 438 (1018)
....|+...+.-.. .-....+|++.|++++..+..... . -.|.++||||||
T Consensus 136 T~~l~~~~~~~~r~--------------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRG--------------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred eeeccCccCCCchh--------------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 55555533221100 112356899999999987744322 2 358999999999
Q ss_pred cccCcc--cHHHHHHHhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCC--ChHHHHHHHhch------------h
Q 001750 439 RLKNKD--SKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG--SLEEFQEEFKDI------------N 500 (1018)
Q Consensus 439 rlKn~~--s~~~~~l~~l~--~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~--~~~~F~~~~~~~------------~ 500 (1018)
|...+. +...+.+...+ ....|+|||||- ++.....+.+.=|... +. ....-...|... .
T Consensus 190 ra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~ 267 (746)
T KOG0354|consen 190 RTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLC 267 (746)
T ss_pred cccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHh
Confidence 986543 34444444443 336799999997 6666666555544433 11 111112222111 1
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCH--H-----------HHH-HHHHHHHH-HHHHHHhcCCc
Q 001750 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSS--K-----------QKE-YYKAILTR-NYQILTRRGGA 565 (1018)
Q Consensus 501 ~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~--~-----------Q~~-~Y~~il~~-~~~~l~~~~~~ 565 (1018)
.......|..+++|++.+-.... |.+..-.--..+... . |+- .|..++.. +...+...+-.
T Consensus 268 ~~~~~~~f~~~i~p~l~~l~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir 343 (746)
T KOG0354|consen 268 ERDIEDPFGMIIEPLLQQLQEEG----LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIR 343 (746)
T ss_pred hhhhhhhHHHHHHHHHHHHHhcC----ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchh
Confidence 12334567777777765443222 211110000000000 0 110 11111110 00001000000
Q ss_pred chhHHHHHHHHHHhhCccc----ccCCCCCC-ccccHHH---HHHH----HhhhhHHHHHHHHHHHHHHh--CCeEEEEe
Q 001750 566 QISLINVVMELRKLCCHPY----MLEGVEPD-IEDTNES---FKQL----LESSGKLQLLDKMMVKLKEQ--GHRVLIYS 631 (1018)
Q Consensus 566 ~~~l~~~l~~Lrk~c~hP~----l~~~~~~~-~~~~~~~---~~~l----i~~S~Kl~~L~klL~~l~~~--g~kvLIFs 631 (1018)
+.+.+..+.....--. +....+.. ....... +..+ -...+|+..|.++|....+. ..|+|||+
T Consensus 344 ---~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFv 420 (746)
T KOG0354|consen 344 ---FVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFV 420 (746)
T ss_pred ---hHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEE
Confidence 0011111100000000 00000000 0000000 0111 12478999999998877654 47999999
Q ss_pred chhhHHHHHHHHHh---hCCCcEEEEeC--------CCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEE
Q 001750 632 QFQHMLDLLEDYLT---FKKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1018)
Q Consensus 632 q~~~~ldiL~~~L~---~~g~~~~rldG--------~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VI 700 (1018)
.+....+.|..+|. ..|++...+-| +++..+.+++|+.|+++. +.+||+|..|.+|||++.||.||
T Consensus 421 e~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~---~NvLVATSV~EEGLDI~ec~lVI 497 (746)
T KOG0354|consen 421 ETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGE---INVLVATSVAEEGLDIGECNLVI 497 (746)
T ss_pred ehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCC---ccEEEEecchhccCCcccccEEE
Confidence 99999999999987 23556565655 466788899999998744 45899999999999999999999
Q ss_pred EEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEee-CCCHHHHHHHHHHHHHH
Q 001750 701 IYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT-RGSIEERMMQMTKKKMV 751 (1018)
Q Consensus 701 i~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt-~~TvEe~i~~~~~~K~~ 751 (1018)
.||..-||...+||+|| +|. +.-.++-|.+ ...+|-.....+..|++
T Consensus 498 cYd~~snpIrmIQrrGR-gRa---~ns~~vll~t~~~~~~~E~~~~~~e~lm 545 (746)
T KOG0354|consen 498 CYDYSSNPIRMVQRRGR-GRA---RNSKCVLLTTGSEVIEFERNNLAKEKLM 545 (746)
T ss_pred EecCCccHHHHHHHhcc-ccc---cCCeEEEEEcchhHHHHHHHHHhHHHHH
Confidence 99999999999999999 774 4444555555 12233333334444444
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.92 E-value=8.4e-23 Score=242.42 Aligned_cols=313 Identities=17% Similarity=0.272 Sum_probs=214.0
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHH-HHHHHhcCCCC-ceEEEeCC-ccHHHHHHHHHHHc---CC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGERIS-PHLVVAPL-STLRNWEREFATWA---PQ 358 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~-~l~~l~~~~~~-p~LIV~P~-s~l~~W~~E~~~~~---p~ 358 (1018)
++.|+|.+++..+ ..+.++|+..++|+|||...+. ++..+...... ..||+||+ .+..||.+++..++ ++
T Consensus 26 ~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 5889999999876 5788999999999999987544 44444333223 58999996 56689999988764 57
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcc
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~lIvDE 436 (1018)
+++..++|.......+... ....+|+|+|++.+.... ..+.--.+.+||+||
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l--------------------------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSL--------------------------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred cEEEEEECCCChHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 8888888876544332221 135689999999886432 222233568999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhh
Q 001750 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1018)
Q Consensus 437 aHrlKn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1018)
||++-... ..+...+..+. ....+++|||+- .++-.+...
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~----~~~~~l~~~--------------------------------- 198 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP----EGIAAISQR--------------------------------- 198 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc----HHHHHHHHH---------------------------------
Confidence 99986543 23444444444 345799999972 111111000
Q ss_pred hHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCc
Q 001750 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 514 p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~ 593 (1018)
++ .-| . .+.+..... .. . +-.+.+..
T Consensus 199 -~~----------~~~--~--~i~~~~~~~--------------------~~--~----------i~~~~~~~------- 224 (460)
T PRK11776 199 -FQ----------RDP--V--EVKVESTHD--------------------LP--A----------IEQRFYEV------- 224 (460)
T ss_pred -hc----------CCC--E--EEEECcCCC--------------------CC--C----------eeEEEEEe-------
Confidence 00 000 0 000000000 00 0 00000000
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccC
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~ 673 (1018)
....|+..|..++.. ..+.++||||+.....+.+.+.|...|+.+..++|+++..+|+.+++.|.++
T Consensus 225 -----------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g 291 (460)
T PRK11776 225 -----------SPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR 291 (460)
T ss_pred -----------CcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 012255556666643 2356899999999999999999999999999999999999999999999764
Q ss_pred CCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 674 ~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
. ..+||+|.++++|||++.+++||+||.+.++..++|++||++|.|+.- ..|.|++.+
T Consensus 292 ~---~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 292 S---CSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred C---CcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 4 348999999999999999999999999999999999999999999764 345566553
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=3.5e-23 Score=245.58 Aligned_cols=308 Identities=18% Similarity=0.168 Sum_probs=206.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv 362 (1018)
..++|+|.++++-+ ..++++++..+||.|||+..+.-+. .. .+..|||+|+ +++.++.+.+... ++.+.
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~l--~~--~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPAL--CS--DGITLVISPLISLMEDQVLQLKAS--GIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHHH--Hc--CCcEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 4677999999999999987533222 22 3578999996 6668888888765 45566
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc---cc-cCCcceEEEEcccc
Q 001750 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SL-KPIKWQCMIVDEGH 438 (1018)
Q Consensus 363 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~---~l-~~i~w~~lIvDEaH 438 (1018)
.+.|.........-..- ....+++++++|++.+..... .+ ......+|||||||
T Consensus 80 ~l~~~~~~~~~~~i~~~----------------------~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTD----------------------LKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 66665433221110000 012357899999999865432 22 34467899999999
Q ss_pred cccCcccH-------HHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHH
Q 001750 439 RLKNKDSK-------LFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1018)
Q Consensus 439 rlKn~~s~-------~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1018)
.+...... +......+.....++|||||-.....++...+++-.|..+... |
T Consensus 138 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------- 196 (470)
T TIGR00614 138 CISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------- 196 (470)
T ss_pred ccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------
Confidence 98654321 1222233445678999999854433344333332222111000 0
Q ss_pred hhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCC
Q 001750 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1018)
Q Consensus 512 L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~ 591 (1018)
.-|.. .+.+.-.
T Consensus 197 ---------------~r~nl-~~~v~~~---------------------------------------------------- 208 (470)
T TIGR00614 197 ---------------DRPNL-YYEVRRK---------------------------------------------------- 208 (470)
T ss_pred ---------------CCCCc-EEEEEeC----------------------------------------------------
Confidence 00000 0000000
Q ss_pred CccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhc
Q 001750 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1018)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn 671 (1018)
.+..+..+.+.+.+ ...|.++|||+......+.+...|...|+.+..++|+++..+|..+++.|.
T Consensus 209 --------------~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~ 273 (470)
T TIGR00614 209 --------------TPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ 273 (470)
T ss_pred --------------CccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH
Confidence 00011112222221 134678899999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001750 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1018)
Q Consensus 672 ~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iy 730 (1018)
++. +.+|++|.+.|.|||++.+++||+|+++.++..+.|+.||++|.|+...+.+|
T Consensus 274 ~g~---~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 274 RDE---IQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCC---CcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 543 34899999999999999999999999999999999999999999988766554
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.92 E-value=3.7e-23 Score=244.65 Aligned_cols=308 Identities=17% Similarity=0.241 Sum_probs=204.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHH-HHHHhcCC-----C--CceEEEeCC-ccHHHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER-----I--SPHLVVAPL-STLRNWEREFATW 355 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~-l~~l~~~~-----~--~p~LIV~P~-s~l~~W~~E~~~~ 355 (1018)
.+.|+|.+++.-+ ..+.++|+..++|+|||+..+.. +..+.... . ..+|||||+ .+..||..++..+
T Consensus 23 ~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 5889999999766 56889999999999999986554 44443221 1 158999996 5668999999887
Q ss_pred cC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceE
Q 001750 356 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQC 431 (1018)
Q Consensus 356 ~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~ 431 (1018)
.. .+.++.++|.......+... ...++|+|+|++.+... ...+..-..++
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKL--------------------------RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHH--------------------------cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 63 45666666654432221110 13578999999988542 22223335679
Q ss_pred EEEcccccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHH
Q 001750 432 MIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1018)
Q Consensus 432 lIvDEaHrlKn~~--s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1018)
|||||||++-... ..+...+..+.. ...+++|||+- +.+.++. ..+
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~-~~~~~l~---~~~--------------------------- 201 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS-DDIKALA---EKL--------------------------- 201 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc-HHHHHHH---HHH---------------------------
Confidence 9999999986533 233344444543 34789999962 1111111 000
Q ss_pred HHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCC
Q 001750 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1018)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~ 588 (1018)
+ .......+.-..+ .. ..+ .+.+.+
T Consensus 202 ---~----------------~~~~~i~~~~~~~-----------------------~~----------~~i-~~~~~~-- 226 (456)
T PRK10590 202 ---L----------------HNPLEIEVARRNT-----------------------AS----------EQV-TQHVHF-- 226 (456)
T ss_pred ---c----------------CCCeEEEEecccc-----------------------cc----------cce-eEEEEE--
Confidence 0 0000000000000 00 000 000000
Q ss_pred CCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHH
Q 001750 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1018)
Q Consensus 589 ~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~ 668 (1018)
+....|..+|..++.. ....++|||++.....+.|...|...|+....++|.++..+|..+++
T Consensus 227 ---------------~~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 227 ---------------VDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred ---------------cCHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Confidence 0011233334443332 23468999999999999999999999999999999999999999999
Q ss_pred HhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 669 ~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
.|.++ .+.+||+|.++++|||++.+++||+||++.++..++|++||++|.|.+..+.
T Consensus 290 ~F~~g---~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai 346 (456)
T PRK10590 290 DFKSG---DIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEAL 346 (456)
T ss_pred HHHcC---CCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEE
Confidence 99764 3458999999999999999999999999999999999999999999865443
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.92 E-value=3.6e-23 Score=247.89 Aligned_cols=313 Identities=16% Similarity=0.202 Sum_probs=207.5
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHH-HHHHHhcC--------CCCceEEEeCC-ccHHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE--------RISPHLVVAPL-STLRNWEREFAT 354 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~-~l~~l~~~--------~~~p~LIV~P~-s~l~~W~~E~~~ 354 (1018)
.+.|+|.+++..+ ..|+++|+..++|+|||+..+. ++..+... .....|||+|+ .+..|+..++..
T Consensus 143 ~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 143 FPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 5889999999776 4789999999999999988644 44444321 12268999996 555788888887
Q ss_pred HcCC--CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcce
Q 001750 355 WAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (1018)
Q Consensus 355 ~~p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~ 430 (1018)
+... ++++.+.|.......+... ...++|+|+|++.+..-. ..+..-...
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~~l--------------------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v~ 272 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLYRI--------------------------QQGVELIVGTPGRLIDLLSKHDIELDNVS 272 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccchhee
Confidence 7643 4555555543322221110 124689999998874321 122223457
Q ss_pred EEEEcccccccCc--ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHH
Q 001750 431 CMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1018)
Q Consensus 431 ~lIvDEaHrlKn~--~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1018)
+|||||||++... ...+...+..+.....+++|||.-. . +-.+...+....
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~---v~~l~~~~~~~~----------------------- 325 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-E---VEKFASSLAKDI----------------------- 325 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-H---HHHHHHHhCCCC-----------------------
Confidence 8999999998643 3345555666667788999999621 1 111111000000
Q ss_pred HHHhhhHHHHHHHhhHh-hcCCCc--EEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccc
Q 001750 509 HRMLAPHLLRRVKKDVM-KELPPK--KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1018)
Q Consensus 509 ~~~L~p~~lRR~k~dv~-~~lP~k--~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l 585 (1018)
..+ .+. ...+.. ....+.++
T Consensus 326 ------~~i-----~~~~~~~~~~~v~q~~~~~~---------------------------------------------- 348 (518)
T PLN00206 326 ------ILI-----SIGNPNRPNKAVKQLAIWVE---------------------------------------------- 348 (518)
T ss_pred ------EEE-----EeCCCCCCCcceeEEEEecc----------------------------------------------
Confidence 000 000 000000 00011110
Q ss_pred cCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhh-CCCcEEEEeCCCChHHHH
Q 001750 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQ 664 (1018)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~rldG~~~~~~Rq 664 (1018)
...|...|.++|........++|||++.....+.|...|.. .|+++..++|+++..+|.
T Consensus 349 --------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~ 408 (518)
T PLN00206 349 --------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERR 408 (518)
T ss_pred --------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHH
Confidence 11233344444544333446899999999999999999974 699999999999999999
Q ss_pred HHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 665 ~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
.+++.|.++.. .+|++|.++++|||++.+++||+||++.++..++|++||++|.|..- .++.|++.+
T Consensus 409 ~il~~Fr~G~~---~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 409 EVMKSFLVGEV---PVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred HHHHHHHCCCC---CEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 99999976543 48999999999999999999999999999999999999999999754 444566543
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=4.6e-23 Score=245.35 Aligned_cols=315 Identities=18% Similarity=0.279 Sum_probs=210.9
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHH-HHHHHHhcCC--------CCceEEEeCC-ccHHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai-~~l~~l~~~~--------~~p~LIV~P~-s~l~~W~~E~~~ 354 (1018)
.+.++|.++++.+ ..|.++|++..+|+|||+..+ .++..+.... ....|||+|+ .+..|+.+.+..
T Consensus 109 ~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5889999999866 678999999999999998864 3445454321 2368999996 566888888887
Q ss_pred HcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcce
Q 001750 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQ 430 (1018)
Q Consensus 355 ~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~--~l~~i~w~ 430 (1018)
+.. ++++..++|..+....++.. ....++|+|+|++.+..... .+.--...
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~-------------------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQL-------------------------EARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 753 46788888875433322221 11356899999999854221 11122457
Q ss_pred EEEEcccccccCcc--cHHHHHHHhcc---cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHH
Q 001750 431 CMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1018)
Q Consensus 431 ~lIvDEaHrlKn~~--s~~~~~l~~l~---~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~ 505 (1018)
+|||||||++.+.. ..+...+..+. ....+++|||.- +++.++. ..+.
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~~---~~~~----------------------- 292 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT-DDVMNLA---KQWT----------------------- 292 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC-HHHHHHH---HHhc-----------------------
Confidence 89999999986543 22334444442 245789999952 1111111 0000
Q ss_pred HHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccc
Q 001750 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1018)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l 585 (1018)
..+ ..+.+.... .... . +. .|-+.
T Consensus 293 ----------------------~~~---~~v~~~~~~-------------------~~~~--~-------~~---~~~~~ 316 (475)
T PRK01297 293 ----------------------TDP---AIVEIEPEN-------------------VASD--T-------VE---QHVYA 316 (475)
T ss_pred ----------------------cCC---EEEEeccCc-------------------CCCC--c-------cc---EEEEE
Confidence 000 001110000 0000 0 00 00000
Q ss_pred cCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHH
Q 001750 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1018)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~ 665 (1018)
+..+.|..+|..++.. ..+.++|||++.....+.|...|...|+.+..++|.++..+|..
T Consensus 317 ------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 376 (475)
T PRK01297 317 ------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIK 376 (475)
T ss_pred ------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 0123344555555543 23469999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 666 ~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
+++.|.++. ..+|++|.++++|||++.+++||+||.++|+..++|+.||++|.|+.-. ++-|++.+
T Consensus 377 ~~~~Fr~G~---~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 377 TLEGFREGK---IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred HHHHHhCCC---CcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 999997644 4489999999999999999999999999999999999999999997644 34455443
No 34
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.91 E-value=1.3e-22 Score=239.20 Aligned_cols=312 Identities=16% Similarity=0.188 Sum_probs=207.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHH-HHHHHhcC-----CCCceEEEeCCc-cHHHHHHHHHHHc
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE-----RISPHLVVAPLS-TLRNWEREFATWA 356 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~-~l~~l~~~-----~~~p~LIV~P~s-~l~~W~~E~~~~~ 356 (1018)
.++.++|.+++..+ ..+.++|+...+|.|||+.++. ++..+... +...+||++|.. +..|+.+.+..++
T Consensus 22 ~~p~~iQ~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPA----LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35889999999766 4678999999999999998654 34444321 123689999964 6678877777765
Q ss_pred --CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEE
Q 001750 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1018)
Q Consensus 357 --p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~l 432 (1018)
.++++..++|.......... -...++|+|+|++.+.... ..+..-.+++|
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~--------------------------l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEV--------------------------FSENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHH--------------------------hcCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 35788888886544322111 0125689999998876432 22333356789
Q ss_pred EEcccccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHH
Q 001750 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1018)
Q Consensus 433 IvDEaHrlKn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1018)
||||||++-... ..+...+..+. ....+++|||+-...+.++.. .+
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~---~~---------------------------- 200 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE---RL---------------------------- 200 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH---HH----------------------------
Confidence 999999986533 22222333332 245689999973111111100 00
Q ss_pred HHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCC
Q 001750 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1018)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~ 589 (1018)
+.... .+.+..+.... ....|-+....
T Consensus 201 ------------------~~~~~--~i~~~~~~~~~--------------------------------~~i~~~~~~~~- 227 (434)
T PRK11192 201 ------------------LNDPV--EVEAEPSRRER--------------------------------KKIHQWYYRAD- 227 (434)
T ss_pred ------------------ccCCE--EEEecCCcccc--------------------------------cCceEEEEEeC-
Confidence 00000 01111000000 00000000000
Q ss_pred CCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHH
Q 001750 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
....|+.+|..++.. ....++|||++....++.|...|...|+....++|.++..+|..+++.
T Consensus 228 ---------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 228 ---------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred ---------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 012355555555542 245799999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~I 729 (1018)
|+++ .+.+|++|.++++|||++.+++||+||+++++..++|++||++|.|....+.+
T Consensus 291 f~~G---~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 291 LTDG---RVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred HhCC---CCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 9764 44589999999999999999999999999999999999999999998755544
No 35
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=5.7e-23 Score=241.22 Aligned_cols=313 Identities=16% Similarity=0.215 Sum_probs=209.7
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHH-HHHHhcCC--------CCceEEEeCC-ccHHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~-l~~l~~~~--------~~p~LIV~P~-s~l~~W~~E~~~ 354 (1018)
.+.|.|.+++.-+ ..+.++|+..++|+|||+..+.. +..+.... ...+||++|+ .+..|+.+++..
T Consensus 30 ~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5789999998765 57899999999999999987544 33443221 1258999996 566888888877
Q ss_pred HcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcce
Q 001750 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (1018)
Q Consensus 355 ~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~ 430 (1018)
+.. ++++..++|........... ...++|+|+|++.+.... ..+..-.+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL--------------------------ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 753 57777777765433221110 124689999999885432 223334578
Q ss_pred EEEEcccccccCcc--cHHHHHHHhcc---cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHH
Q 001750 431 CMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1018)
Q Consensus 431 ~lIvDEaHrlKn~~--s~~~~~l~~l~---~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~ 505 (1018)
+|||||||++-... ..+...+..+. ....+++|||.- ..+.++
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~-~~~~~~------------------------------- 207 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLS-YRVREL------------------------------- 207 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCC-HHHHHH-------------------------------
Confidence 99999999986533 22333334443 223588999962 111100
Q ss_pred HHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccc
Q 001750 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1018)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l 585 (1018)
... .+..... +.+.-... ... ...+.++
T Consensus 208 ------~~~------------~~~~p~~--i~v~~~~~-------------------~~~-------------~i~~~~~ 235 (423)
T PRK04837 208 ------AFE------------HMNNPEY--VEVEPEQK-------------------TGH-------------RIKEELF 235 (423)
T ss_pred ------HHH------------HCCCCEE--EEEcCCCc-------------------CCC-------------ceeEEEE
Confidence 000 0000000 00100000 000 0000111
Q ss_pred cCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHH
Q 001750 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1018)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~ 665 (1018)
.. ....|+.+|..++.. ....++|||++.....+.|...|...|+++..++|.++..+|..
T Consensus 236 ~~-----------------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 236 YP-----------------SNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred eC-----------------CHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 00 023456666666654 24679999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 666 ~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
+++.|+++. ..+|++|.++++|||++.+++||+||+++++..|+|++||++|.|+.-.+ +-|++.
T Consensus 297 ~l~~F~~g~---~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 297 ILEEFTRGD---LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHcCC---CcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 999997654 34899999999999999999999999999999999999999999976443 445544
No 36
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.90 E-value=5.8e-22 Score=240.46 Aligned_cols=309 Identities=17% Similarity=0.230 Sum_probs=209.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHH-HHHHHHhcCCC-CceEEEeCC-ccHHHHHHHHHHHc---C
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERI-SPHLVVAPL-STLRNWEREFATWA---P 357 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai-~~l~~l~~~~~-~p~LIV~P~-s~l~~W~~E~~~~~---p 357 (1018)
.++.|+|.+++..+ ..+.++|+..++|+|||++.+ .++..+..... ..+||+||+ .+..||..++..+. +
T Consensus 27 ~~ptpiQ~~ai~~l----l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHL----LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 36889999999876 467899999999999999864 44444433322 368999996 56689999988764 6
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEc
Q 001750 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1018)
Q Consensus 358 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~lIvD 435 (1018)
.++++.++|.......++.. ....+|||+|++.+.... ..+.--...+||||
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l--------------------------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL--------------------------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred CceEEEEECCcCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 78888888775443322221 124689999998885432 22223356789999
Q ss_pred ccccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHh
Q 001750 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1018)
Q Consensus 436 EaHrlKn~~--s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L 512 (1018)
|||.+-+.. ..+...+..+.. ...+++|||.- ..+.++ .
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p-~~i~~i-------------------------------------~ 198 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP-EAIRRI-------------------------------------T 198 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC-hhHHHH-------------------------------------H
Confidence 999875543 334455555543 45688999951 111100 0
Q ss_pred hhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCC
Q 001750 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1018)
Q Consensus 513 ~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~ 592 (1018)
..+ +..... +.+.-. + .... ...+.|..
T Consensus 199 ~~~------------l~~~~~--i~i~~~--~-------------------~~~~-----------~i~q~~~~------ 226 (629)
T PRK11634 199 RRF------------MKEPQE--VRIQSS--V-------------------TTRP-----------DISQSYWT------ 226 (629)
T ss_pred HHH------------cCCCeE--EEccCc--c-------------------ccCC-----------ceEEEEEE------
Confidence 000 000000 000000 0 0000 00000000
Q ss_pred ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhcc
Q 001750 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1018)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~ 672 (1018)
+....|...|..+|.. ....++||||......+.|...|...|+....++|.++..+|..+++.|..
T Consensus 227 -----------v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 227 -----------VWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred -----------echhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 0122355555555543 234689999999999999999999999999999999999999999999976
Q ss_pred CCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 673 ~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
+ ...+||+|.+++.|||++.+++||+||.+.++..++|++||++|.|..-.+.
T Consensus 294 G---~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 294 G---RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred C---CCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEE
Confidence 4 3458999999999999999999999999999999999999999999765443
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=2.9e-22 Score=241.69 Aligned_cols=311 Identities=16% Similarity=0.266 Sum_probs=208.5
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHH-HHHHhcCC--------CCceEEEeCC-ccHHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~-l~~l~~~~--------~~p~LIV~P~-s~l~~W~~E~~~ 354 (1018)
.+.|.|..++..+ ..++++|+..++|+|||+..+.. +..+.... ...+|||+|+ .+..|+..++.+
T Consensus 31 ~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5889999999876 57899999999999999987554 44443211 1368999996 666889999988
Q ss_pred HcCC--CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc---cccCCcc
Q 001750 355 WAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKW 429 (1018)
Q Consensus 355 ~~p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~---~l~~i~w 429 (1018)
+... +++..++|........... ...++|+|+|++.+..... .+.....
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l--------------------------~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELL--------------------------QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHH--------------------------hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 8743 5677777765432211110 1247899999998865321 2333356
Q ss_pred eEEEEcccccccCcc--cHHHHHHHhcc---cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHH
Q 001750 430 QCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1018)
Q Consensus 430 ~~lIvDEaHrlKn~~--s~~~~~l~~l~---~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~ 504 (1018)
.+|||||||++-... ..+...+..+. ....+++|||.- +.+.++.
T Consensus 161 ~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~-~~v~~l~----------------------------- 210 (572)
T PRK04537 161 EICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-HRVLELA----------------------------- 210 (572)
T ss_pred eeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc-HHHHHHH-----------------------------
Confidence 789999999985432 22333333343 345789999951 1111110
Q ss_pred HHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEec-CCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcc
Q 001750 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (1018)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~-ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP 583 (1018)
..++ .-|. ...+... .+. . .+ .|-
T Consensus 211 --------~~~l----------~~p~--~i~v~~~~~~~----------------------~---------~i----~q~ 235 (572)
T PRK04537 211 --------YEHM----------NEPE--KLVVETETITA----------------------A---------RV----RQR 235 (572)
T ss_pred --------HHHh----------cCCc--EEEeccccccc----------------------c---------ce----eEE
Confidence 0000 0000 0000000 000 0 00 000
Q ss_pred cccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHH
Q 001750 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (1018)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~R 663 (1018)
+.+. ....|+..|..++.. ..+.++|||++.....+.|.+.|...|+.+..++|.++..+|
T Consensus 236 ~~~~-----------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR 296 (572)
T PRK04537 236 IYFP-----------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKR 296 (572)
T ss_pred EEec-----------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 0000 012244455555543 347899999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEee
Q 001750 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1018)
Q Consensus 664 q~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt 734 (1018)
..+++.|.++ ...+||+|.++++|||++.+++||+||.++++..++|++||++|.|....+. -|++
T Consensus 297 ~~il~~Fr~G---~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai--~~~~ 362 (572)
T PRK04537 297 ESLLNRFQKG---QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI--SFAC 362 (572)
T ss_pred HHHHHHHHcC---CCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE--EEec
Confidence 9999999764 3458999999999999999999999999999999999999999999865443 3444
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.89 E-value=8.7e-22 Score=240.39 Aligned_cols=304 Identities=20% Similarity=0.222 Sum_probs=208.4
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv 362 (1018)
.+++|+|.++++-+ ..+++++++.+||.|||+.+...+ +.. .+.+|||+|+ +++.++...+... +..+.
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpa--l~~--~g~~lVisPl~sL~~dq~~~l~~~--gi~~~ 81 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPA--LLL--KGLTVVISPLISLMKDQVDQLRAA--GVAAA 81 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHH--HHc--CCcEEEEcCCHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 567899999999999999875333 222 3578999995 6778888888875 46677
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcccccc
Q 001750 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1018)
Q Consensus 363 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~lIvDEaHrl 440 (1018)
.++++...........- ......+++++|++.+... ...+......+|||||||.+
T Consensus 82 ~~~s~~~~~~~~~~~~~----------------------l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKA----------------------LVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 77765443221111000 0123568999999988542 23455667899999999998
Q ss_pred cCccc-------HHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhh
Q 001750 441 KNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1018)
Q Consensus 441 Kn~~s-------~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1018)
...+. ++......+.....++||||+-.....++...+.+-.+..+.+ .+
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~----------------- 196 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF----------------- 196 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC-----------------
Confidence 64322 2223333344455899999985444333333332211111100 00
Q ss_pred hHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCc
Q 001750 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 514 p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~ 593 (1018)
.-|.....++.
T Consensus 197 -------------~r~nl~~~v~~-------------------------------------------------------- 207 (591)
T TIGR01389 197 -------------DRPNLRFSVVK-------------------------------------------------------- 207 (591)
T ss_pred -------------CCCCcEEEEEe--------------------------------------------------------
Confidence 00000000000
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccC
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~ 673 (1018)
...+...+..+|... .+.++|||+......+.+..+|...|+++..++|+++.++|..+++.|..+
T Consensus 208 ------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 208 ------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred ------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 011222233333321 267899999999999999999999999999999999999999999999764
Q ss_pred CCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 674 ~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
. +.+|++|.+.|.|||++.+++||+|+++.|+..+.|+.||++|.|+...+.
T Consensus 274 ~---~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 274 D---VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred C---CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 3 458999999999999999999999999999999999999999999766554
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=1.1e-21 Score=238.96 Aligned_cols=304 Identities=18% Similarity=0.172 Sum_probs=203.5
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv 362 (1018)
.+++|+|.++++-+ ..++++++..+||.|||+..+..+. .. .+.+|||+|+ +++.++...+... ...+.
T Consensus 24 ~~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpal--~~--~g~tlVisPl~sL~~dqv~~l~~~--gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPAL--VL--DGLTLVVSPLISLMKDQVDQLLAN--GVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHH--Hc--CCCEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 36899999999866 5788999999999999987543322 22 3579999996 6667888888764 35555
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcccccc
Q 001750 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1018)
Q Consensus 363 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~lIvDEaHrl 440 (1018)
.+.+..........+.- ....+.+++++|++.+... ...+...+.++|||||||.+
T Consensus 94 ~~~s~~~~~~~~~~~~~----------------------~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 94 CLNSTQTREQQLEVMAG----------------------CRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred EEcCCCCHHHHHHHHHH----------------------HhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 55554332221111100 0123567899999988642 23344557789999999998
Q ss_pred cCccc---HHHHHHH----hcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhh
Q 001750 441 KNKDS---KLFSSLK----QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1018)
Q Consensus 441 Kn~~s---~~~~~l~----~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1018)
..... ..+..+. .+.....++||||+-.....++..++.+-+|..+... |
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~----------------- 208 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------F----------------- 208 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------C-----------------
Confidence 65332 1222232 2334568999999854433333333322221110000 0
Q ss_pred hHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCc
Q 001750 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 514 p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~ 593 (1018)
.-|.....++ .
T Consensus 209 -------------~r~nl~~~v~--------------------------------------------------~------ 219 (607)
T PRK11057 209 -------------DRPNIRYTLV--------------------------------------------------E------ 219 (607)
T ss_pred -------------CCCcceeeee--------------------------------------------------e------
Confidence 0000000000 0
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccC
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~ 673 (1018)
...++..|..++.. ..+.++||||+.....+.+...|...|+++..++|+++.++|+.+++.|..+
T Consensus 220 ------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g 285 (607)
T PRK11057 220 ------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD 285 (607)
T ss_pred ------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC
Confidence 00011112222221 3578999999999999999999999999999999999999999999999764
Q ss_pred CCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 674 ~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
. ..+|++|.+.|.|||++.+++||+||.+.|+..+.|+.||++|.|....+.
T Consensus 286 ~---~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 286 D---LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred C---CCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 4 348999999999999999999999999999999999999999999765543
No 40
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.5e-21 Score=223.86 Aligned_cols=311 Identities=19% Similarity=0.283 Sum_probs=223.9
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhc------CCCCc-eEEEeCCc-cHHHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG------ERISP-HLVVAPLS-TLRNWEREFATW 355 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~------~~~~p-~LIV~P~s-~l~~W~~E~~~~ 355 (1018)
.+.|-|..+.-.+ ..|+++|...++|+|||+.- |..|.++.+ .+.+| +||++|+- +-.|-+.++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 4677777765444 67899999999999999884 556667665 12345 89999975 447788888888
Q ss_pred cCCCe--EEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceE
Q 001750 356 APQMN--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQC 431 (1018)
Q Consensus 356 ~p~~~--vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~ 431 (1018)
...+. .++.+|.......++.. ....+|+|+|+..+... ...+.--...+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--------------------------~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--------------------------ERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--------------------------hcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 85544 67777766555544442 23578999999998653 23344446779
Q ss_pred EEEccccccc--CcccHHHHHHHhc-ccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHH
Q 001750 432 MIVDEGHRLK--NKDSKLFSSLKQY-STR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1018)
Q Consensus 432 lIvDEaHrlK--n~~s~~~~~l~~l-~~~-~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~ 507 (1018)
+|+|||.++- +...++.+.+..+ ... ..|+-|||- +.
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTw----p~----------------------------------- 283 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATW----PK----------------------------------- 283 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeec----cH-----------------------------------
Confidence 9999999985 4567888888888 444 367888883 01
Q ss_pred HHHHhhhHHHHHHHhhHhhcCCCcEEEEEEe-cCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCccccc
Q 001750 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRV-ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1018)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v-~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~ 586 (1018)
-+|.+.++.+. -+....+... ++.. ...+.++-..
T Consensus 284 --------~v~~lA~~fl~--~~~~i~ig~~~~~~a---------------------------~~~i~qive~------- 319 (519)
T KOG0331|consen 284 --------EVRQLAEDFLN--NPIQINVGNKKELKA---------------------------NHNIRQIVEV------- 319 (519)
T ss_pred --------HHHHHHHHHhc--CceEEEecchhhhhh---------------------------hcchhhhhhh-------
Confidence 11122222222 1112222111 0000 0001111111
Q ss_pred CCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHH-HhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHH
Q 001750 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1018)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~-~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~ 665 (1018)
+...+|...|.++|.... ..+.||||||+...+.+.|+..|...+|+.+.|+|..++.+|..
T Consensus 320 -----------------~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 320 -----------------CDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred -----------------cCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 224568888888888877 44569999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 666 ~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
+++.|.++.+ -+|++|..++.||+++..++||.||+|-|...|++|+||.+|.|++-...
T Consensus 383 ~L~~FreG~~---~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 383 VLKGFREGKS---PVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred HHHhcccCCc---ceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 9999966544 58999999999999999999999999999999999999999988765543
No 41
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.5e-22 Score=222.39 Aligned_cols=339 Identities=17% Similarity=0.308 Sum_probs=234.6
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc-cHHHHHHHHHHHcC--C
Q 001750 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAP--Q 358 (1018)
Q Consensus 282 ~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~~W~~E~~~~~p--~ 358 (1018)
+..++||||...++-|. .-...++||+.-+.|.|||+..++.+..+ .+.+||+|..+ -+.||+..|..|.. +
T Consensus 299 Pst~iRpYQEksL~KMF-GNgRARSGiIVLPCGAGKtLVGvTAa~ti----kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMF-GNGRARSGIIVLPCGAGKTLVGVTAACTI----KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccccCchHHHHHHHHh-CCCcccCceEEEecCCCCceeeeeeeeee----cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 34679999999988762 11233578999999999999887766554 24789999965 46999999999982 3
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----------cccccCCc
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPIK 428 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d----------~~~l~~i~ 428 (1018)
-.+..|+.+...+ ......|+||||.++..- ..++....
T Consensus 374 ~~i~rFTsd~Ke~-------------------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~E 422 (776)
T KOG1123|consen 374 DQICRFTSDAKER-------------------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGRE 422 (776)
T ss_pred cceEEeecccccc-------------------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCe
Confidence 3455565544332 123567999999999532 45688889
Q ss_pred ceEEEEcccccccCcccHHHHH-HHhcccccEEEEecCCCCCCHHHHHHHHHhh-cCCCCCChHHHHHHHhchhhHHHHH
Q 001750 429 WQCMIVDEGHRLKNKDSKLFSS-LKQYSTRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQIS 506 (1018)
Q Consensus 429 w~~lIvDEaHrlKn~~s~~~~~-l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL-~p~~~~~~~~F~~~~~~~~~~~~~~ 506 (1018)
|.++|+||+|-+ .+++++. +..+++..+|+||||-+... |-..=|||| .|..+
T Consensus 423 WGllllDEVHvv---PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlY-------------------- 477 (776)
T KOG1123|consen 423 WGLLLLDEVHVV---PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLY-------------------- 477 (776)
T ss_pred eeeEEeehhccc---hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhh--------------------
Confidence 999999999975 3455544 45556778999999986432 111113333 23222
Q ss_pred HHHHHhhhHHHHHHHhhHhh--cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCccc
Q 001750 507 RLHRMLAPHLLRRVKKDVMK--ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1018)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~~--~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~ 584 (1018)
--..-++.+ .+.......|+|+||+.- |+..+..+... .-++
T Consensus 478 -----------EAnWmdL~~kGhIA~VqCaEVWCpMt~eF---y~eYL~~~t~k--------r~lL-------------- 521 (776)
T KOG1123|consen 478 -----------EANWMDLQKKGHIAKVQCAEVWCPMTPEF---YREYLRENTRK--------RMLL-------------- 521 (776)
T ss_pred -----------hccHHHHHhCCceeEEeeeeeecCCCHHH---HHHHHhhhhhh--------hhee--------------
Confidence 111111111 234455678999999864 44444332100 0000
Q ss_pred ccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHH
Q 001750 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1018)
Q Consensus 585 l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq 664 (1018)
.+-+..|++...-|++....+|.|+||||..+-.|...+ -..|-+| |.|.+++.+|-
T Consensus 522 ------------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YA---ikl~Kpf--IYG~Tsq~ERm 578 (776)
T KOG1123|consen 522 ------------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYA---IKLGKPF--IYGPTSQNERM 578 (776)
T ss_pred ------------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH---HHcCCce--EECCCchhHHH
Confidence 012466888888899888889999999998876655443 3344454 68999999999
Q ss_pred HHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCC-CcchHHHHHHHHHhhCCC----CcEEEEEEeeCCCHH
Q 001750 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQT----NKVMIFRLITRGSIE 739 (1018)
Q Consensus 665 ~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dw-Np~~~~Qa~gR~hRiGQ~----k~V~Iyrlvt~~TvE 739 (1018)
++++.|+..+.-.- +.-+++|...|+|+.|+.+|-..+.. +-.+..||+||+.|.-.. =++..|-||+++|.|
T Consensus 579 ~ILqnFq~n~~vNT--IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 579 KILQNFQTNPKVNT--IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred HHHHhcccCCccce--EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 99999986544333 44489999999999999999998865 567789999999997532 258899999999988
Q ss_pred HHH
Q 001750 740 ERM 742 (1018)
Q Consensus 740 e~i 742 (1018)
..-
T Consensus 657 M~Y 659 (776)
T KOG1123|consen 657 MYY 659 (776)
T ss_pred HHh
Confidence 654
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.89 E-value=2.1e-21 Score=226.73 Aligned_cols=315 Identities=18% Similarity=0.269 Sum_probs=205.1
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC--CCCceEEEeCC-ccHHHHHHHHHHHcC--CC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~--~~~p~LIV~P~-s~l~~W~~E~~~~~p--~~ 359 (1018)
.+.|+|..++..+ ..+.++|+..++|+|||+.++..+...... ....+||++|. .+..|+.+.+...+. ..
T Consensus 50 ~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 6899999999876 578899999999999999875544444332 23378999996 555777777776653 34
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEccc
Q 001750 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (1018)
Q Consensus 360 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~lIvDEa 437 (1018)
.+....|....+..+... ....+|+|+|++.+... ...+..-++++||||||
T Consensus 126 ~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 126 RCHACVGGTVVRDDINKL--------------------------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred eEEEEECCcCHHHHHHHH--------------------------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 455556654433322111 12357999999887532 12222335689999999
Q ss_pred ccccCc--ccHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhh
Q 001750 438 HRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1018)
Q Consensus 438 HrlKn~--~s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1018)
|++... ...+...+..+.. ...+++|||+- +...++.. .|.. .|
T Consensus 180 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~------------------~~~~--------------~~ 226 (401)
T PTZ00424 180 DEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP-NEILELTT------------------KFMR--------------DP 226 (401)
T ss_pred HHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC-HHHHHHHH------------------HHcC--------------CC
Confidence 998543 2345555555543 46789999962 11111000 0000 00
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCcc
Q 001750 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1018)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~ 594 (1018)
..+ ..+.+- ..+.......+.+. .
T Consensus 227 ~~~-~~~~~~-~~~~~~~~~~~~~~--~---------------------------------------------------- 250 (401)
T PTZ00424 227 KRI-LVKKDE-LTLEGIRQFYVAVE--K---------------------------------------------------- 250 (401)
T ss_pred EEE-EeCCCC-cccCCceEEEEecC--h----------------------------------------------------
Confidence 000 000000 00000000000000 0
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCC
Q 001750 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1018)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~ 674 (1018)
...+...+..++..+ ...++|||++.....+.+...|...++.+..++|+++..+|+.+++.|+++.
T Consensus 251 -----------~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~ 317 (401)
T PTZ00424 251 -----------EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGS 317 (401)
T ss_pred -----------HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 001222233333221 3468999999999999999999999999999999999999999999997643
Q ss_pred CCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 675 s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
..+|++|.++++|||++.+++||+||++.++..++|++||++|.|.. ..++.|++..
T Consensus 318 ---~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 318 ---TRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred ---CCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 45899999999999999999999999999999999999999999864 4456677654
No 43
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2e-21 Score=209.06 Aligned_cols=322 Identities=21% Similarity=0.284 Sum_probs=229.8
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHH-HHHHHHHHhcCCCC-ceEEEeCCccHH-HHHHHHHHHc--CCC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTLR-NWEREFATWA--PQM 359 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiq-ai~~l~~l~~~~~~-p~LIV~P~s~l~-~W~~E~~~~~--p~~ 359 (1018)
.+.+-|.+++-.+ ..|+.+|.+.|+|.|||.. +|-++..|+++... ..||++|.--+. |-...|+... -++
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4667888888655 6889999999999999988 67788888886544 569999987664 4555577764 467
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc---cccCCcceEEEEcc
Q 001750 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIVDE 436 (1018)
Q Consensus 360 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~---~l~~i~w~~lIvDE 436 (1018)
++.++.|..+...+..+. ..+.||+|.|+..+..... -+.--...++|+||
T Consensus 159 r~~~lvGG~~m~~q~~~L--------------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL--------------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEEEEecCchHHHHHHHh--------------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 888999988776554332 2478999999999876433 22222446799999
Q ss_pred cccccCcc--cHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhh
Q 001750 437 GHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1018)
Q Consensus 437 aHrlKn~~--s~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1018)
|.||-|.. -.+-..|..+... ..+|.|||- .. .+.+|...
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM-t~----------------------------------kv~kL~ra-- 255 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATM-TK----------------------------------KVRKLQRA-- 255 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeec-ch----------------------------------hhHHHHhh--
Confidence 99998864 4566777777654 457788884 11 12122100
Q ss_pred hHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCc
Q 001750 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 514 p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~ 593 (1018)
.+-.. +.|.-+. .| .++..|.+ -||+-.
T Consensus 256 -------------sl~~p----~~v~~s~----ky----------------------~tv~~lkQ----~ylfv~----- 283 (476)
T KOG0330|consen 256 -------------SLDNP----VKVAVSS----KY----------------------QTVDHLKQ----TYLFVP----- 283 (476)
T ss_pred -------------ccCCC----eEEeccc----hh----------------------cchHHhhh----heEecc-----
Confidence 01000 0111000 01 11111222 122211
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccC
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~ 673 (1018)
..-|-..|..+|..+ .|..+||||....+.+.+.-+|+..|+....++|.++...|--+++.|+++
T Consensus 284 ------------~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 284 ------------GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred ------------ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 122445566666653 468999999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHH
Q 001750 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1018)
Q Consensus 674 ~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~ 746 (1018)
.- -+|++|+.++.|+|.+.+|+||.||.|-+-..|++|.||+.|.| +.-.+..||+. +|-..+++.
T Consensus 350 ~r---~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330|consen 350 AR---SILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred CC---cEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHH
Confidence 44 38999999999999999999999999999999999999999999 66677789988 444444443
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.88 E-value=7e-21 Score=233.76 Aligned_cols=308 Identities=17% Similarity=0.173 Sum_probs=203.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv 362 (1018)
..+||+|.++++.+ ..|+++|+...||.|||+....-+.. . .+.+|||+|+ +|+.++...+.. ..+.+.
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL~--~--~GiTLVISPLiSLmqDQV~~L~~--~GI~Aa 528 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPALI--C--PGITLVISPLVSLIQDQIMNLLQ--ANIPAA 528 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHHH--c--CCcEEEEeCHHHHHHHHHHHHHh--CCCeEE
Confidence 47999999999866 57899999999999999886433322 1 3579999996 555545555544 256677
Q ss_pred EEecChHHHH---HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc---ccccC----CcceEE
Q 001750 363 MYVGTSQARN---IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKP----IKWQCM 432 (1018)
Q Consensus 363 ~y~g~~~~r~---~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~---~~l~~----i~w~~l 432 (1018)
.+.|...... +++.. .....++++|++|++.+.... ..+.. -...+|
T Consensus 529 ~L~s~~s~~eq~~ilr~l-----------------------~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQEL-----------------------SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred EEECCCCHHHHHHHHHHH-----------------------HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 6766543322 22211 001246789999999885421 11211 236789
Q ss_pred EEcccccccCcccH---HHHH----HHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHH
Q 001750 433 IVDEGHRLKNKDSK---LFSS----LKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1018)
Q Consensus 433 IvDEaHrlKn~~s~---~~~~----l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~ 505 (1018)
||||||.+...+.. -++. ...+.....++||||.-.....++...|.+..+..|. ..|
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf--------- 650 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSF--------- 650 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------ccc---------
Confidence 99999998654321 1222 2234455679999998555444444433322211110 000
Q ss_pred HHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccc
Q 001750 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1018)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l 585 (1018)
.-|.....++ +- .
T Consensus 651 ---------------------~RpNL~y~Vv--~k---~----------------------------------------- 663 (1195)
T PLN03137 651 ---------------------NRPNLWYSVV--PK---T----------------------------------------- 663 (1195)
T ss_pred ---------------------CccceEEEEe--cc---c-----------------------------------------
Confidence 0011000000 00 0
Q ss_pred cCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHH
Q 001750 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1018)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~ 665 (1018)
...+..|.+++... ..+...||||......+.|..+|...|++...++|+++..+|..
T Consensus 664 ---------------------kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~ 721 (1195)
T PLN03137 664 ---------------------KKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAF 721 (1195)
T ss_pred ---------------------hhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHH
Confidence 00011111222111 12457899999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEE
Q 001750 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1018)
Q Consensus 666 ~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyr 731 (1018)
+++.|..+. +.+|++|.|.|.|||++.+++||+||.+-++..|.|++|||+|.|+...+..|+
T Consensus 722 vqe~F~~Ge---i~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 722 VQKQWSKDE---INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHHhcCC---CcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 999997644 458999999999999999999999999999999999999999999886665544
No 45
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.87 E-value=2.4e-20 Score=228.31 Aligned_cols=305 Identities=15% Similarity=0.243 Sum_probs=197.9
Q ss_pred CCChhHHHHHHHHHHHhhcCC--CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc-cHHHHHHHHHHHcC--C
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAP--Q 358 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~--~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~~W~~E~~~~~p--~ 358 (1018)
.+|.++|.+++..+....... .+.+|..++|+|||+.++..+......+ ..+||++|+. +..|+.+++.++++ +
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-YQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 479999999998886654332 4689999999999998865554444432 3899999975 45899999999986 4
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccc
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaH 438 (1018)
+++.+++|+..........+. ......+|+|+|+..+.... .+ -+.++|||||+|
T Consensus 313 i~v~lltg~~~~~~r~~~~~~----------------------i~~g~~~IiVgT~~ll~~~~-~~--~~l~lvVIDEaH 367 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLET----------------------IASGQIHLVVGTHALIQEKV-EF--KRLALVIIDEQH 367 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHH----------------------HhCCCCCEEEecHHHHhccc-cc--cccceEEEechh
Confidence 888999987544321111100 01235789999999886432 22 245799999999
Q ss_pred cccCcccHHHHHHHh-cc---cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhh
Q 001750 439 RLKNKDSKLFSSLKQ-YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1018)
Q Consensus 439 rlKn~~s~~~~~l~~-l~---~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1018)
++.-. ....+.. .. ..+.|++||||....+. +..+ .+.
T Consensus 368 ~fg~~---qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~----------------~~l--------------- 409 (630)
T TIGR00643 368 RFGVE---QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY----------------GDL--------------- 409 (630)
T ss_pred hccHH---HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc----------------CCc---------------
Confidence 97322 2222322 22 56899999999653211 0000 000
Q ss_pred HHHHHHHhhHhhcCCCcE--EEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCC
Q 001750 515 HLLRRVKKDVMKELPPKK--ELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1018)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~--e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~ 592 (1018)
...+...+|+.. .....+.-.
T Consensus 410 ------~~~~i~~~p~~r~~i~~~~~~~~--------------------------------------------------- 432 (630)
T TIGR00643 410 ------DTSIIDELPPGRKPITTVLIKHD--------------------------------------------------- 432 (630)
T ss_pred ------ceeeeccCCCCCCceEEEEeCcc---------------------------------------------------
Confidence 000111222211 000001000
Q ss_pred ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhh--------HHHHHHHHHhh--CCCcEEEEeCCCChHH
Q 001750 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTF--KKWQYERIDGKVGGAE 662 (1018)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~--------~ldiL~~~L~~--~g~~~~rldG~~~~~~ 662 (1018)
.+ ..+...+......|++++||+.... ....+.+.|.. .++++..++|.++..+
T Consensus 433 ---------------~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 433 ---------------EK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ---------------hH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 00 1111222233346788888886542 23344444442 4788999999999999
Q ss_pred HHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCC-CcchHHHHHHHHHhhCCCCcEE
Q 001750 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 663 Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dw-Np~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
|..+++.|.++.. .+|++|.+.++|||++.+++||+++++. +-..+.|+.||++|-|....+.
T Consensus 497 R~~i~~~F~~g~~---~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 497 KEAVMEEFREGEV---DILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHcCCC---CEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 9999999976443 4899999999999999999999999974 6778999999999998765443
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.87 E-value=2e-20 Score=235.81 Aligned_cols=322 Identities=19% Similarity=0.214 Sum_probs=201.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHH-HHHHHhcCC-------CCceEEEeCC-ccHHHHHHH---
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER-------ISPHLVVAPL-STLRNWERE--- 351 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~-~l~~l~~~~-------~~p~LIV~P~-s~l~~W~~E--- 351 (1018)
..|+|+|.+++.-+ ..+.++|+..+||+|||..++. ++..+.... ...+|+|+|+ ++..++.+.
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 35999999998765 5788999999999999998754 455554321 1258999996 455555543
Q ss_pred ----HHHHc-------CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc
Q 001750 352 ----FATWA-------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (1018)
Q Consensus 352 ----~~~~~-------p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d 420 (1018)
+..++ |++++.+.+|+.......+. .....+|+|||++.+..-
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~--------------------------l~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM--------------------------LKKPPHILITTPESLAIL 160 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH--------------------------HhCCCCEEEecHHHHHHH
Confidence 33343 46788889988654332111 012568999999998532
Q ss_pred c------ccccCCcceEEEEcccccccCcc--cHHHHH---HHhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCC
Q 001750 421 S------ASLKPIKWQCMIVDEGHRLKNKD--SKLFSS---LKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (1018)
Q Consensus 421 ~------~~l~~i~w~~lIvDEaHrlKn~~--s~~~~~---l~~l~--~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~ 487 (1018)
. ..|. ...+|||||+|.+-+.. ..+... +..+. ...+++||||. .++.++.. +|......
T Consensus 161 l~~~~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~ 233 (876)
T PRK13767 161 LNSPKFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD 233 (876)
T ss_pred hcChhHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc
Confidence 1 1222 34689999999987532 222222 22332 34679999996 33444332 22211000
Q ss_pred ChHHHHHHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcch
Q 001750 488 SLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI 567 (1018)
Q Consensus 488 ~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~ 567 (1018)
.. . ++..+ +...........+.++...
T Consensus 234 ~~----------~------------r~~~i------v~~~~~k~~~i~v~~p~~~------------------------- 260 (876)
T PRK13767 234 GE----------P------------RDCEI------VDARFVKPFDIKVISPVDD------------------------- 260 (876)
T ss_pred CC----------C------------CceEE------EccCCCccceEEEeccCcc-------------------------
Confidence 00 0 00000 0000000000000000000
Q ss_pred hHHHHHHHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhh-
Q 001750 568 SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF- 646 (1018)
Q Consensus 568 ~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~- 646 (1018)
+..... ......+...|..+...++++|||++.....+.+...|..
T Consensus 261 -----------------l~~~~~----------------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 261 -----------------LIHTPA----------------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -----------------cccccc----------------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 000000 0001112233444455688999999999999998888865
Q ss_pred -----CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhh
Q 001750 647 -----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1018)
Q Consensus 647 -----~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRi 721 (1018)
.+..+..++|+++.++|..+.+.|.++. +.+|++|.++++|||++.+|+||+|+++.++..++|++||++|.
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~---i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE---LKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCC---CeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 2467899999999999999999997643 45899999999999999999999999999999999999999976
Q ss_pred -CCCCcEEEEE
Q 001750 722 -GQTNKVMIFR 731 (1018)
Q Consensus 722 -GQ~k~V~Iyr 731 (1018)
|+.....|+-
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4555555554
No 47
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.87 E-value=2.2e-20 Score=231.02 Aligned_cols=330 Identities=16% Similarity=0.183 Sum_probs=213.3
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHc-CCCeE
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~-p~~~v 361 (1018)
+|+++|.+++..+ ..|+++|+...||+|||+.. +.++..+........|||+|+ .+..|-.+++..+. .++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 6999999999876 67899999999999999986 445555554433479999996 45577778888875 35788
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--------ccccCCcceEEE
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPIKWQCMI 433 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--------~~l~~i~w~~lI 433 (1018)
.+|.|+....... . -..+.+|+|||++++.... ..|. +..+||
T Consensus 112 ~~~~Gdt~~~~r~-~--------------------------i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vV 162 (742)
T TIGR03817 112 ATYDGDTPTEERR-W--------------------------AREHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVV 162 (742)
T ss_pred EEEeCCCCHHHHH-H--------------------------HhcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEE
Confidence 8899876533210 0 0123589999999986321 1122 346899
Q ss_pred EcccccccCc-ccHHHHHHHhc---c-----cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHH
Q 001750 434 VDEGHRLKNK-DSKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1018)
Q Consensus 434 vDEaHrlKn~-~s~~~~~l~~l---~-----~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~ 504 (1018)
|||||.+.+. .+.+...+..+ . ....+++|||- +|+.++... ++. ..+
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~~--l~g-~~~------------------ 219 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAASR--LIG-APV------------------ 219 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHHH--HcC-CCe------------------
Confidence 9999998652 33333333332 1 23578999995 333333211 110 000
Q ss_pred HHHHHHHhhhHHHHHHHhhHhh-cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcc
Q 001750 505 ISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (1018)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~-~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP 583 (1018)
. .+.. .-|......+........ + ....
T Consensus 220 -----------~------~i~~~~~~~~~~~~~~~~p~~~~------~----------~~~~------------------ 248 (742)
T TIGR03817 220 -----------V------AVTEDGSPRGARTVALWEPPLTE------L----------TGEN------------------ 248 (742)
T ss_pred -----------E------EECCCCCCcCceEEEEecCCccc------c----------cccc------------------
Confidence 0 0000 011111111111100000 0 0000
Q ss_pred cccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhC--------CCcEEEEe
Q 001750 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------KWQYERID 655 (1018)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--------g~~~~rld 655 (1018)
.. .... .....+..+|..+ ...+.++|||++.....+.|..+|... +.++..++
T Consensus 249 ----~~--~~r~--------~~~~~~~~~l~~l----~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h 310 (742)
T TIGR03817 249 ----GA--PVRR--------SASAEAADLLADL----VAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR 310 (742)
T ss_pred ----cc--cccc--------chHHHHHHHHHHH----HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee
Confidence 00 0000 0011233334333 345889999999999999998887643 56788899
Q ss_pred CCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 656 G~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
|+++.++|.++.+.|.+ +.+.+|++|.++++|||+...|+||+||.|-+...++|++||++|.|+... ++-+++.
T Consensus 311 gg~~~~eR~~ie~~f~~---G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~ 385 (742)
T TIGR03817 311 AGYLPEDRRELERALRD---GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARD 385 (742)
T ss_pred cCCCHHHHHHHHHHHHc---CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCC
Confidence 99999999999999965 445689999999999999999999999999999999999999999997643 4445555
Q ss_pred CCHHHHHHH
Q 001750 736 GSIEERMMQ 744 (1018)
Q Consensus 736 ~TvEe~i~~ 744 (1018)
+..|..++.
T Consensus 386 ~~~d~~~~~ 394 (742)
T TIGR03817 386 DPLDTYLVH 394 (742)
T ss_pred ChHHHHHHh
Confidence 667766544
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.87 E-value=2.7e-20 Score=229.28 Aligned_cols=304 Identities=15% Similarity=0.212 Sum_probs=198.0
Q ss_pred CCChhHHHHHHHHHHHhhcCC--CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc-cHHHHHHHHHHHcCC--
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQ-- 358 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~--~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~~W~~E~~~~~p~-- 358 (1018)
.+|+++|..++.-+...+..+ .+.+|..++|+|||+.++..+...... ...+||++|+. +..|....|.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-g~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-GYQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 479999999998886655432 478999999999999987655544433 23799999975 558899999998865
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccc
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaH 438 (1018)
+++..++|...........+- ......+|+|+|+..+.... .+. +.++|||||+|
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~v-~~~--~l~lvVIDE~H 393 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEA----------------------IASGEADIVIGTHALIQDDV-EFH--NLGLVIIDEQH 393 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHH----------------------HhCCCCCEEEchHHHhcccc-hhc--ccceEEEechh
Confidence 788889987653221111100 01235789999998885421 232 45789999999
Q ss_pred cccCcccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhHHH
Q 001750 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1018)
Q Consensus 439 rlKn~~s~~~~~l~~l-~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~l 517 (1018)
++. ......+... ...+.|+|||||+...+ .+..+ .+..
T Consensus 394 rfg---~~qr~~l~~~~~~~~iL~~SATp~prtl----~~~~~----------------g~~~----------------- 433 (681)
T PRK10917 394 RFG---VEQRLALREKGENPHVLVMTATPIPRTL----AMTAY----------------GDLD----------------- 433 (681)
T ss_pred hhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHH----HHHHc----------------CCCc-----------------
Confidence 973 2233344433 25689999999953211 00000 0000
Q ss_pred HHHHhhHhhcCCCcE--EEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCccc
Q 001750 518 RRVKKDVMKELPPKK--ELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1018)
Q Consensus 518 RR~k~dv~~~lP~k~--e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~ 595 (1018)
-.+...+|+.. .....+.
T Consensus 434 ----~s~i~~~p~~r~~i~~~~~~-------------------------------------------------------- 453 (681)
T PRK10917 434 ----VSVIDELPPGRKPITTVVIP-------------------------------------------------------- 453 (681)
T ss_pred ----eEEEecCCCCCCCcEEEEeC--------------------------------------------------------
Confidence 00001122110 0000000
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhh--------HHHHHHHHHhhC--CCcEEEEeCCCChHHHHH
Q 001750 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTFK--KWQYERIDGKVGGAERQI 665 (1018)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~--------~ldiL~~~L~~~--g~~~~rldG~~~~~~Rq~ 665 (1018)
..+...+.+.+....+.|++++|||..+. ....+.+.|... ++++..++|+++..+|+.
T Consensus 454 -----------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 454 -----------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred -----------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 00011112223333467889999997542 233445555433 578999999999999999
Q ss_pred HHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCC-CcchHHHHHHHHHhhCCCCcE
Q 001750 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKV 727 (1018)
Q Consensus 666 ~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dw-Np~~~~Qa~gR~hRiGQ~k~V 727 (1018)
++++|.++. ..+|++|.+.++|||++.+++||+++++. ....+.|+.||++|-|....+
T Consensus 523 i~~~F~~g~---~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 523 VMAAFKAGE---IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred HHHHHHcCC---CCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 999997644 34899999999999999999999999974 567889999999998865444
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.87 E-value=2.4e-20 Score=232.65 Aligned_cols=307 Identities=18% Similarity=0.207 Sum_probs=203.0
Q ss_pred CCChhHHHHHHHHHHHhhcCC--CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc-cHHHHHHHHHHHcCC--
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQ-- 358 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~--~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~~W~~E~~~~~p~-- 358 (1018)
.++.|.|..++..+..-...+ .+.+++.++|.|||..++..+......+ ..+||+||+. +..|....|.++++.
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 468999999999886654443 5789999999999998765544333333 4899999975 447888889988755
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccc
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaH 438 (1018)
+++..++|.......-...+- ....+.+|||+|+..+..+. .+. +..+|||||+|
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~~----------------------l~~g~~dIVIGTp~ll~~~v-~f~--~L~llVIDEah 583 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILKE----------------------LASGKIDILIGTHKLLQKDV-KFK--DLGLLIIDEEQ 583 (926)
T ss_pred cEEEEEeccccHHHHHHHHHH----------------------HHcCCceEEEchHHHhhCCC-Ccc--cCCEEEeeccc
Confidence 455667665432221111000 01235789999998775332 222 45789999999
Q ss_pred cccCcccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHh-hcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhHH
Q 001750 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHF-LDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1018)
Q Consensus 439 rlKn~~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~f-L~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~ 516 (1018)
++. ......+..+. ..+.|+|||||+...+ ...+.. .++.
T Consensus 584 rfg---v~~~~~L~~~~~~~~vL~~SATpiprtl---~~~l~g~~d~s-------------------------------- 625 (926)
T TIGR00580 584 RFG---VKQKEKLKELRTSVDVLTLSATPIPRTL---HMSMSGIRDLS-------------------------------- 625 (926)
T ss_pred ccc---hhHHHHHHhcCCCCCEEEEecCCCHHHH---HHHHhcCCCcE--------------------------------
Confidence 973 23345555554 4578999999964221 111000 0000
Q ss_pred HHHHHhhHhhcCCCcEEEEE---EecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCc
Q 001750 517 LRRVKKDVMKELPPKKELIL---RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 517 lRR~k~dv~~~lP~k~e~iv---~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~ 593 (1018)
+. ..||.....+ .++.+.
T Consensus 626 -------~I-~~~p~~R~~V~t~v~~~~~--------------------------------------------------- 646 (926)
T TIGR00580 626 -------II-ATPPEDRLPVRTFVMEYDP--------------------------------------------------- 646 (926)
T ss_pred -------EE-ecCCCCccceEEEEEecCH---------------------------------------------------
Confidence 00 0111110000 000000
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhC--CCcEEEEeCCCChHHHHHHHHHhc
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFN 671 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~~~~~~Rq~~i~~Fn 671 (1018)
..+...++.. ...|.+|+||++.+...+.+.+.|... ++++..++|.++..+|.+++.+|.
T Consensus 647 ----------------~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~ 709 (926)
T TIGR00580 647 ----------------ELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFY 709 (926)
T ss_pred ----------------HHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH
Confidence 0000111122 235789999999999999999999863 789999999999999999999997
Q ss_pred cCCCCceEEEeecccccccccCCCCCEEEEEcCC-CCcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 672 ~~~s~~~v~Llstragg~GINL~~ad~VIi~D~d-wNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
++.. .+||||.+.+.|||++.+++||+++.+ +....+.|+.||++|.|.. -.+|-|+..
T Consensus 710 ~Gk~---~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 710 KGEF---QVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred cCCC---CEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 6544 489999999999999999999999986 4566889999999998764 455556544
No 50
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.87 E-value=2.9e-20 Score=235.87 Aligned_cols=356 Identities=17% Similarity=0.213 Sum_probs=206.1
Q ss_pred CCChhHHHHHHHHHHHhhcC-CCceEEEcCCCccHHHHHHHHHHHHhcC-CCCceEEEeC-CccHHHHHHHHHHHcCCCe
Q 001750 284 GSLHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQMN 360 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~-~~~~ILaDemGlGKTiqai~~l~~l~~~-~~~p~LIV~P-~s~l~~W~~E~~~~~p~~~ 360 (1018)
..||+||.++++.+...+.. .++++|.+.+|+|||+++++++..++.. ..+++||||| ..++.||..+|..+.+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 57999999999877666654 4679999999999999999999888764 3459999999 5777999999998643211
Q ss_pred --EEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-------cccCCcceE
Q 001750 361 --VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQC 431 (1018)
Q Consensus 361 --vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~-------~l~~i~w~~ 431 (1018)
+....+... +... .......|+|+|++++.+... .+..-.|++
T Consensus 492 ~~~~~i~~i~~----L~~~------------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdl 543 (1123)
T PRK11448 492 QTFASIYDIKG----LEDK------------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDC 543 (1123)
T ss_pred cchhhhhchhh----hhhh------------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccE
Confidence 100111000 0000 011245799999999865321 122346889
Q ss_pred EEEcccccccCcc----------------cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHH
Q 001750 432 MIVDEGHRLKNKD----------------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE 495 (1018)
Q Consensus 432 lIvDEaHrlKn~~----------------s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~ 495 (1018)
||||||||..... ...++.+..+-...+|+|||||..+. .++|. .| .
T Consensus 544 IIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t-~~~FG-----~p-v---------- 606 (1123)
T PRK11448 544 IIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT-TEIFG-----EP-V---------- 606 (1123)
T ss_pred EEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch-hHHhC-----Ce-e----------
Confidence 9999999963211 12333333333358899999997432 11111 00 0
Q ss_pred HhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEE----ecCC-HHHHHHHHHHHHHHHHHHHhcCCcchhHH
Q 001750 496 FKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILR----VELS-SKQKEYYKAILTRNYQILTRRGGAQISLI 570 (1018)
Q Consensus 496 ~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~----v~ls-~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~ 570 (1018)
....-.+.+. ..+++ ..-||....... +... ..+...|...... +....
T Consensus 607 -~~Ysl~eAI~------DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~~------- 660 (1123)
T PRK11448 607 -YTYSYREAVI------DGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLAT------- 660 (1123)
T ss_pred -EEeeHHHHHh------cCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhh----hhhcc-------
Confidence 0000001110 00000 001333322111 0001 1111122211100 00000
Q ss_pred HHHHHHHHhhCcccccCCCCCCccccHHHH-HHHHhhhhHHH-HHHHHHHHHHH-hCCeEEEEechhhHHHHHHHHHhhC
Q 001750 571 NVVMELRKLCCHPYMLEGVEPDIEDTNESF-KQLLESSGKLQ-LLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFK 647 (1018)
Q Consensus 571 ~~l~~Lrk~c~hP~l~~~~~~~~~~~~~~~-~~li~~S~Kl~-~L~klL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~ 647 (1018)
.+++.......+ +.++ ...... ++..++..+.. .+.|+||||......+.+.+.|...
T Consensus 661 ------------------l~d~~~~~~~~~~~~vi-~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 661 ------------------LEDEVDFEVEDFNRRVI-TESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ------------------CcHHHhhhHHHHHHHHh-hHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 000000000000 1111 111111 22333333322 2369999999998888777776532
Q ss_pred ------CC---cEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHH
Q 001750 648 ------KW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (1018)
Q Consensus 648 ------g~---~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~ 718 (1018)
++ .+..++|+++ +++.+|++|.++... .+++++..+++|+|.+.+++||++.|.-++..++|++||+
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRg 797 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRA 797 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhh
Confidence 22 4567999875 578899999764333 5799999999999999999999999999999999999999
Q ss_pred HhhCC---CCcEEEEEEe
Q 001750 719 HRLGQ---TNKVMIFRLI 733 (1018)
Q Consensus 719 hRiGQ---~k~V~Iyrlv 733 (1018)
.|..- +....||.++
T Consensus 798 tR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 798 TRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccCCccCCCceEEEEehH
Confidence 99854 5667788766
No 51
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=99.85 E-value=9e-22 Score=185.66 Aligned_cols=78 Identities=50% Similarity=0.953 Sum_probs=71.1
Q ss_pred CCCCCCccccCCCCCCCCCccccCCCcceecCCChHHHHHHHHHHHHhCCCCCchhhhcccccCCCHHHHHHHHHHHhh
Q 001750 937 PGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCF 1015 (1018)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~pl~~~~~~~~~v~Gf~~~~r~~f~~~~~~~g~~~~~~~~~~~~l~~ks~~e~~~y~~~~~~ 1015 (1018)
..+++++++.| +..++||||+++|++++|+|||.+||++|+|++||||++.|+|+|++++|++||++||++|++||+.
T Consensus 10 ~~r~~~rkk~r-~~~~~pPLm~~~g~~l~VlGFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~ 87 (145)
T PF06461_consen 10 TGRRPSRKKRR-DNKDPPPLMAGVGGQLEVLGFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMR 87 (145)
T ss_pred ccccccccccc-cCCCCCCccccCCCceEEeccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHH
Confidence 45666666666 5556699999999999999999999999999999999999999999999999999999999999974
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.85 E-value=1.1e-19 Score=231.42 Aligned_cols=305 Identities=18% Similarity=0.228 Sum_probs=199.5
Q ss_pred CCChhHHHHHHHHHHHhhcC--CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH-HHHHHHHHHHcCC--
Q 001750 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQ-- 358 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~--~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~~W~~E~~~~~p~-- 358 (1018)
.++.+.|.+++.-+..-+.. ..+.+++.+||+|||.+++..+..... ....+||+||+..| .|..+.|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-NHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 46899999999876554433 367999999999999987644333322 23489999997655 7788888876644
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccc
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaH 438 (1018)
+++.+++|...........+- ......+|||+|++.+..+. .--+.++|||||+|
T Consensus 678 v~i~~l~g~~s~~e~~~il~~----------------------l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEah 732 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAE----------------------AAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEH 732 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHH----------------------HHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechh
Confidence 456666664333221111000 01235789999998875432 22356899999999
Q ss_pred cccCcccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhHHH
Q 001750 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1018)
Q Consensus 439 rlKn~~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~l 517 (1018)
++.. .....++.+. ....|++||||++..+.- .+..+.++.. +
T Consensus 733 rfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l--~~~gl~d~~~-------------------------------I 776 (1147)
T PRK10689 733 RFGV---RHKERIKAMRADVDILTLTATPIPRTLNM--AMSGMRDLSI-------------------------------I 776 (1147)
T ss_pred hcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHH--HHhhCCCcEE-------------------------------E
Confidence 9832 2344455554 457899999996433210 0000000000 0
Q ss_pred HHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCccccH
Q 001750 518 RRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTN 597 (1018)
Q Consensus 518 RR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~~ 597 (1018)
..|+.....+ +. +... ..
T Consensus 777 ---------~~~p~~r~~v----------------------------------------~~-----~~~~-~~------- 794 (1147)
T PRK10689 777 ---------ATPPARRLAV----------------------------------------KT-----FVRE-YD------- 794 (1147)
T ss_pred ---------ecCCCCCCCc----------------------------------------eE-----EEEe-cC-------
Confidence 0111100000 00 0000 00
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhC--CCcEEEEeCCCChHHHHHHHHHhccCCC
Q 001750 598 ESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNAKNS 675 (1018)
Q Consensus 598 ~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~~~~~~Rq~~i~~Fn~~~s 675 (1018)
.......++..+. .|.+|+||++.+..++.+.+.|... ++++..++|.++..+|.+++.+|.++.
T Consensus 795 -----------~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk- 861 (1147)
T PRK10689 795 -----------SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR- 861 (1147)
T ss_pred -----------cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcC-
Confidence 0001122333333 4679999999999999999999776 789999999999999999999997654
Q ss_pred CceEEEeecccccccccCCCCCEEEEEcCC-CCcchHHHHHHHHHhhCCCCcE
Q 001750 676 SRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 727 (1018)
Q Consensus 676 ~~~v~Llstragg~GINL~~ad~VIi~D~d-wNp~~~~Qa~gR~hRiGQ~k~V 727 (1018)
+.+||+|.+.+.|||++.+++||+.+++ ++...+.|+.||++|.|.+..+
T Consensus 862 --~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 862 --FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred --CCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE
Confidence 3489999999999999999999998886 6778899999999999876443
No 53
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.7e-19 Score=212.10 Aligned_cols=329 Identities=21% Similarity=0.337 Sum_probs=223.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhc--CCCCc-eEEEeCCccH-HHHHHHHHHHcC-
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--ERISP-HLVVAPLSTL-RNWEREFATWAP- 357 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~--~~~~p-~LIV~P~s~l-~~W~~E~~~~~p- 357 (1018)
..+.|.|..++--+ ..|+++|....+|+|||..- |.+|..+.. ....+ .||++|+--| .|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 36889999998765 56799999999999999874 555666542 22223 8999997555 677777777663
Q ss_pred --CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEE
Q 001750 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMI 433 (1018)
Q Consensus 358 --~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~lI 433 (1018)
.+++++++|...-...+... .. ..||||.|+..+... ...+..-...++|
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l-------------------------~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEAL-------------------------KR-GVDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHH-------------------------hc-CCCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 57788888876555444332 11 378999999988632 2234444567899
Q ss_pred EcccccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHH
Q 001750 434 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1018)
Q Consensus 434 vDEaHrlKn~~--s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~ 510 (1018)
+|||.++-+.+ ..+...+..+.. ...++.|||--. .+.+ |
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~----------------------------------l-- 222 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIRE----------------------------------L-- 222 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHH----------------------------------H--
Confidence 99999997653 345555666654 567899999511 1111 1
Q ss_pred HhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCC
Q 001750 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1018)
Q Consensus 511 ~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~ 590 (1018)
.+.++ . .|. .+.+..... ... ..+ ..|.|+.-
T Consensus 223 -~~~~l---------~--~p~---~i~v~~~~~-------------------~~~----------~~~-i~q~~~~v--- 254 (513)
T COG0513 223 -ARRYL---------N--DPV---EIEVSVEKL-------------------ERT----------LKK-IKQFYLEV--- 254 (513)
T ss_pred -HHHHc---------c--CCc---EEEEccccc-------------------ccc----------ccC-ceEEEEEe---
Confidence 00000 0 000 111110000 000 000 00111100
Q ss_pred CCccccHHHHHHHHhh-hhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHH
Q 001750 591 PDIEDTNESFKQLLES-SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 591 ~~~~~~~~~~~~li~~-S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
.. ..|+.+|..++..... .++|||+......+.|...|...|+++..|+|++++.+|..+++.
T Consensus 255 --------------~~~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 255 --------------ESEEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred --------------CCHHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 01 1477778777765432 379999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K 749 (1018)
|+++. +-+||+|.++++||+++..++||.||.+.++..|++|+||.+|.|.+ -..+.|++. .-|...+....+.
T Consensus 319 F~~g~---~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~--G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 319 FKDGE---LRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRK--GVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred HHcCC---CCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCC--CeEEEEeCc-HHHHHHHHHHHHH
Confidence 98544 34899999999999999999999999999999999999999999944 355567766 2245555555444
No 54
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.81 E-value=3.1e-18 Score=196.99 Aligned_cols=328 Identities=14% Similarity=0.192 Sum_probs=195.9
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcC-CCCceEEEeCC-ccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCC
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 384 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~-~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~ 384 (1018)
+++..++|+|||.+++..+...... ..+++++|+|. +++.|+.+.+..++.. ++..++|...... .... .+.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~----~~~ 75 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM----GDS 75 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc----CCc
Confidence 5889999999999988877665543 34589999994 7778999999988744 5666676543211 0000 000
Q ss_pred chhhhccccCccccccccccccccEEEccHHHHhhcccc-c-------cCCcceEEEEcccccccCccc-HHHHHHHhcc
Q 001750 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-L-------KPIKWQCMIVDEGHRLKNKDS-KLFSSLKQYS 455 (1018)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~-l-------~~i~w~~lIvDEaHrlKn~~s-~~~~~l~~l~ 455 (1018)
. ...+.. .............+++++|++.+...... + ..+.-.+||+||+|.+..... .+...+..+.
T Consensus 76 ~-~~~~~~--~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 76 E-EFEHLF--PLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred h-hHHHHH--HHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0 000000 00000001123567999999987643222 1 122336899999999865322 2333333332
Q ss_pred --cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEE
Q 001750 456 --TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKE 533 (1018)
Q Consensus 456 --~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e 533 (1018)
....+++|||+- ..+-.++.-..... .....+..
T Consensus 153 ~~~~~~i~~SATlp----~~l~~~~~~~~~~~--------------------------------------~~~~~~~~-- 188 (358)
T TIGR01587 153 DNDVPILLMSATLP----KFLKEYAEKIGYVE--------------------------------------FNEPLDLK-- 188 (358)
T ss_pred HcCCCEEEEecCch----HHHHHHHhcCCCcc--------------------------------------cccCCCCc--
Confidence 345799999961 00100000000000 00000000
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHH
Q 001750 534 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 613 (1018)
Q Consensus 534 ~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L 613 (1018)
+. +....|++..... ....|...+
T Consensus 189 --------~~---------------------------------~~~~~~~~~~~~~---------------~~~~~~~~l 212 (358)
T TIGR01587 189 --------EE---------------------------------RRFERHRFIKIES---------------DKVGEISSL 212 (358)
T ss_pred --------cc---------------------------------cccccccceeecc---------------ccccCHHHH
Confidence 00 0001122111000 011234445
Q ss_pred HHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCC--cEEEEeCCCChHHHHHH----HHHhccCCCCceEEEeecccc
Q 001750 614 DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIR----IDRFNAKNSSRFCFLLSTRAG 687 (1018)
Q Consensus 614 ~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~--~~~rldG~~~~~~Rq~~----i~~Fn~~~s~~~v~Llstrag 687 (1018)
.+++..+ ..+.++|||++.....+.+...|...+. .+..++|.++..+|.++ ++.|.+ +...+|++|.+.
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~---~~~~ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK---NEKFVIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC---CCCeEEEECcch
Confidence 5555333 3578999999999999999999987766 48999999999999764 788865 334589999999
Q ss_pred cccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCC----cEEEEEEeeCC---CHHHHHHHHHHHHH
Q 001750 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN----KVMIFRLITRG---SIEERMMQMTKKKM 750 (1018)
Q Consensus 688 g~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k----~V~Iyrlvt~~---TvEe~i~~~~~~K~ 750 (1018)
+.|||+. +++||.++.+ +..++|++||++|.|... .|.||.....+ .++..++++...++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999995 8999998765 889999999999999764 45566555444 56666666665543
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.81 E-value=1.3e-18 Score=217.28 Aligned_cols=316 Identities=20% Similarity=0.197 Sum_probs=198.5
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHH-HHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcC-CCeE
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~-~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p-~~~v 361 (1018)
+|+|+|.+++.-+ +..+++++++.+||.|||+.+.. ++..+. ..+++|+|+|. +++.|+.++|.++.+ ++++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v 97 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVRV 97 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEE
Confidence 6999999998642 35789999999999999999854 444443 23589999995 777899999988753 6788
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc----ccccCCcceEEEEccc
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----ASLKPIKWQCMIVDEG 437 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~----~~l~~i~w~~lIvDEa 437 (1018)
..++|+...... .....+|+|+|++.+..-. ..+. ..++|||||+
T Consensus 98 ~~~tGd~~~~~~-----------------------------~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE~ 146 (737)
T PRK02362 98 GISTGDYDSRDE-----------------------------WLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDEV 146 (737)
T ss_pred EEEeCCcCcccc-----------------------------ccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEECc
Confidence 888887432110 1134689999999874321 1222 3579999999
Q ss_pred ccccCcc--cHHHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHH
Q 001750 438 HRLKNKD--SKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1018)
Q Consensus 438 HrlKn~~--s~~~~~l~~l----~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1018)
|.+.+.. ..+-..+..+ .....++||||. .|..++.. +++...+.+.
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl--~n~~~la~---wl~~~~~~~~---------------------- 199 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI--GNADELAD---WLDAELVDSE---------------------- 199 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC--CCHHHHHH---HhCCCcccCC----------------------
Confidence 9986432 2222222222 234679999997 34555443 2322211100
Q ss_pred hhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCC
Q 001750 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1018)
Q Consensus 512 L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~ 591 (1018)
.+| .| ....+..-. + ++ . ... +..+
T Consensus 200 ~rp-------------v~-l~~~v~~~~----~--~~----------~---~~~----------------~~~~------ 224 (737)
T PRK02362 200 WRP-------------ID-LREGVFYGG----A--IH----------F---DDS----------------QREV------ 224 (737)
T ss_pred CCC-------------CC-CeeeEecCC----e--ec----------c---ccc----------------cccC------
Confidence 000 00 000000000 0 00 0 000 0000
Q ss_pred CccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhC------------------------
Q 001750 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------ 647 (1018)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~------------------------ 647 (1018)
....+...+ .++......++++|||++.......+...|...
T Consensus 225 -------------~~~~~~~~~-~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (737)
T PRK02362 225 -------------EVPSKDDTL-NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVS 290 (737)
T ss_pred -------------CCccchHHH-HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcc
Confidence 000011111 122222346789999999887766655555321
Q ss_pred ------------CCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEE----Ec-----CCC
Q 001750 648 ------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-----SDW 706 (1018)
Q Consensus 648 ------------g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi----~D-----~dw 706 (1018)
...+..++|+++..+|..+.+.|.+ +.+.+|++|.+++.|||+++..+||. || .+.
T Consensus 291 ~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~---G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~ 367 (737)
T PRK02362 291 DTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD---RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPI 367 (737)
T ss_pred CccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc---CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeC
Confidence 1357788999999999999999975 44568999999999999999877775 77 467
Q ss_pred CcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 707 NPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 707 Np~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
++..+.|++|||+|.|....-.++-+...
T Consensus 368 s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 368 PVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 88999999999999998765555555543
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.80 E-value=1.7e-17 Score=206.77 Aligned_cols=317 Identities=19% Similarity=0.184 Sum_probs=195.6
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcC-CCe
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p-~~~ 360 (1018)
.+|+|+|.+++.-. +..+.++|++..+|.|||+.+ ++++..+.. ..+.+|+|+|. +++.++.++|..|.. +.+
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 36899999998631 267899999999999999998 555555543 33589999995 666888888887752 577
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc----ccccCCcceEEEEcc
Q 001750 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----ASLKPIKWQCMIVDE 436 (1018)
Q Consensus 361 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~----~~l~~i~w~~lIvDE 436 (1018)
+..++|+...... .....+|+|+|++.+..-. ..+. +.++|||||
T Consensus 98 v~~~~Gd~~~~~~-----------------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE 146 (720)
T PRK00254 98 VAMTTGDYDSTDE-----------------------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADE 146 (720)
T ss_pred EEEEeCCCCCchh-----------------------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcC
Confidence 8888887432110 0125689999999874321 1222 457999999
Q ss_pred cccccC--cccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhh
Q 001750 437 GHRLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1018)
Q Consensus 437 aHrlKn--~~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1018)
+|.+.. ....+...+..+. ....++||||. .|..++.. ++....+... .+
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl--~n~~~la~---wl~~~~~~~~----------------------~r 199 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLGRAQILGLSATV--GNAEELAE---WLNAELVVSD----------------------WR 199 (720)
T ss_pred cCccCCccchHHHHHHHHhcCcCCcEEEEEccC--CCHHHHHH---HhCCccccCC----------------------CC
Confidence 999854 3344444555543 35678999997 34555543 2322211100 00
Q ss_pred hHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCc
Q 001750 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 514 p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~ 593 (1018)
..|-... ++ .. .+.+.... ..
T Consensus 200 -------------pv~l~~~-~~-~~-------------------------------------------~~~~~~~~-~~ 220 (720)
T PRK00254 200 -------------PVKLRKG-VF-YQ-------------------------------------------GFLFWEDG-KI 220 (720)
T ss_pred -------------CCcceee-Ee-cC-------------------------------------------CeeeccCc-ch
Confidence 0110000 00 00 00000000 00
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhh---------------------------
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--------------------------- 646 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~--------------------------- 646 (1018)
... ...+..++..+...|.++|||++.......+...|..
T Consensus 221 ~~~-------------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 221 ERF-------------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred hcc-------------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 000 0001122223334578899999877655443333210
Q ss_pred ------CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEE-------EcCCC-CcchHH
Q 001750 647 ------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDSDW-NPHADL 712 (1018)
Q Consensus 647 ------~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi-------~D~dw-Np~~~~ 712 (1018)
....+..++|+++.++|..+.+.|.++ .+.+|++|.+++.|+|+++.++||. ++.+. ....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G---~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREG---LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC---CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 123578899999999999999999754 4568999999999999998877774 22222 345789
Q ss_pred HHHHHHHhhCCCCcEEEEEEeeCCC
Q 001750 713 QAMARAHRLGQTNKVMIFRLITRGS 737 (1018)
Q Consensus 713 Qa~gR~hRiGQ~k~V~Iyrlvt~~T 737 (1018)
|++|||+|.|..+.-.++-+++...
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998776666666665443
No 57
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.79 E-value=9.9e-18 Score=202.69 Aligned_cols=322 Identities=21% Similarity=0.204 Sum_probs=218.4
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCC-C----C-ceEEEeCCccH-HHHHHHHHHH
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-I----S-PHLVVAPLSTL-RNWEREFATW 355 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~-~----~-p~LIV~P~s~l-~~W~~E~~~~ 355 (1018)
.+|+|.|..++.-+ ..|.|+++..+||+|||..| +..+..+...+ . + .+|.|.|+-.| ..-.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 46899999998766 69999999999999999998 45666776662 1 1 57999997665 4466666666
Q ss_pred c--CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc------cccccCC
Q 001750 356 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPI 427 (1018)
Q Consensus 356 ~--p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d------~~~l~~i 427 (1018)
. -++.+-+-||+...... .++....+||+|||+|++... ...|..+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er--------------------------~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK--------------------------QKMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred HHHcCCccceecCCCChHHh--------------------------hhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 5 35666667776443221 112345789999999998543 2345555
Q ss_pred cceEEEEcccccccCc--ccHHHHHHHhcc----cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhh
Q 001750 428 KWQCMIVDEGHRLKNK--DSKLFSSLKQYS----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn~--~s~~~~~l~~l~----~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~ 501 (1018)
+ +|||||.|.+.+. .++++-.|..+. .-.|++||||= .++.+ ...||.+....
T Consensus 151 r--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~---varfL~g~~~~-------------- 209 (814)
T COG1201 151 R--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPEE---VAKFLVGFGDP-------------- 209 (814)
T ss_pred c--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHHH---HHHHhcCCCCc--------------
Confidence 5 5999999999864 456665555543 24689999994 23333 33445443210
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhC
Q 001750 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1018)
Q Consensus 502 ~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~ 581 (1018)
-.-|......+.++.|.++--..
T Consensus 210 -------------------~~Iv~~~~~k~~~i~v~~p~~~~-------------------------------------- 232 (814)
T COG1201 210 -------------------CEIVDVSAAKKLEIKVISPVEDL-------------------------------------- 232 (814)
T ss_pred -------------------eEEEEcccCCcceEEEEecCCcc--------------------------------------
Confidence 00000011111111111110000
Q ss_pred cccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCC-CcEEEEeCCCCh
Q 001750 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK-WQYERIDGKVGG 660 (1018)
Q Consensus 582 hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g-~~~~rldG~~~~ 660 (1018)
... ..=...+.+.+..+.++...+|||++...+.+.|...|...+ ..+..-+||.+.
T Consensus 233 ------------~~~----------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSr 290 (814)
T COG1201 233 ------------IYD----------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSR 290 (814)
T ss_pred ------------ccc----------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccH
Confidence 000 001122334445555667789999999999999999998876 899999999999
Q ss_pred HHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHH-HhhCCCCcEEEEEEeeCCCHH
Q 001750 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRLITRGSIE 739 (1018)
Q Consensus 661 ~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~-hRiGQ~k~V~Iyrlvt~~TvE 739 (1018)
+.|..+-++|.++. ...++||.++.+||+.-..|.||.|.||-.-...+||+||+ ||+|...+- ++++.+ .+
T Consensus 291 e~R~~vE~~lk~G~---lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg---~ii~~~-r~ 363 (814)
T COG1201 291 ELRLEVEERLKEGE---LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG---IIIAED-RD 363 (814)
T ss_pred HHHHHHHHHHhcCC---ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE---EEEecC-HH
Confidence 99999999997654 45799999999999999999999999999999999999999 778765443 344444 44
Q ss_pred HHH
Q 001750 740 ERM 742 (1018)
Q Consensus 740 e~i 742 (1018)
+.+
T Consensus 364 dll 366 (814)
T COG1201 364 DLL 366 (814)
T ss_pred HHH
Confidence 433
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.79 E-value=3.6e-18 Score=211.77 Aligned_cols=304 Identities=19% Similarity=0.211 Sum_probs=190.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcC-CCeE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p-~~~v 361 (1018)
.+|+|+|.++++.+ ..+.++|++.+||.|||+++...+...... .+..|+|+|. ++..++.+++.++.. +..+
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 46999999999865 678899999999999999986555444333 2588999995 666888888887652 4667
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----cccccCCcceEEEEccc
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIVDEG 437 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d----~~~l~~i~w~~lIvDEa 437 (1018)
...+|+...... .....+|+|+|++.+..- ...+. ++++|||||+
T Consensus 96 ~~~~G~~~~~~~-----------------------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEa 144 (674)
T PRK01172 96 KISIGDYDDPPD-----------------------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEI 144 (674)
T ss_pred EEEeCCCCCChh-----------------------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecc
Confidence 777775432100 012468999999876432 22222 4579999999
Q ss_pred ccccCcc--cHHHHHHHh---cc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHH
Q 001750 438 HRLKNKD--SKLFSSLKQ---YS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1018)
Q Consensus 438 HrlKn~~--s~~~~~l~~---l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1018)
|.+.... ..+-..+.. +. ....++||||+ .|..++. .++....+...
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl--~n~~~la---~wl~~~~~~~~---------------------- 197 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYVNPDARILALSATV--SNANELA---QWLNASLIKSN---------------------- 197 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCcc--CCHHHHH---HHhCCCccCCC----------------------
Confidence 9986432 222222222 22 34679999997 3344433 23322211100
Q ss_pred hhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCC
Q 001750 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1018)
Q Consensus 512 L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~ 591 (1018)
. ...| ....++... ..| . +....
T Consensus 198 ~-------------r~vp-l~~~i~~~~------~~~------------------------------------~-~~~~~ 220 (674)
T PRK01172 198 F-------------RPVP-LKLGILYRK------RLI------------------------------------L-DGYER 220 (674)
T ss_pred C-------------CCCC-eEEEEEecC------eee------------------------------------e-ccccc
Confidence 0 0011 111111000 000 0 00000
Q ss_pred CccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhC------------------------
Q 001750 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------ 647 (1018)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~------------------------ 647 (1018)
.+. .+..++......|.++|||++.....+.+...|...
T Consensus 221 ----------------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 283 (674)
T PRK01172 221 ----------------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEM 283 (674)
T ss_pred ----------------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHH
Confidence 000 022334444556889999999888776666666432
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcC---------CCCcchHHHHHHH
Q 001750 648 -KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS---------DWNPHADLQAMAR 717 (1018)
Q Consensus 648 -g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~---------dwNp~~~~Qa~gR 717 (1018)
...+..++|+++.++|..+.+.|.++ .+.+|++|.+++.|||+++ .+||++|. ++++..+.|++||
T Consensus 284 l~~gv~~~hagl~~~eR~~ve~~f~~g---~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GR 359 (674)
T PRK01172 284 LPHGVAFHHAGLSNEQRRFIEEMFRNR---YIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGR 359 (674)
T ss_pred HhcCEEEecCCCCHHHHHHHHHHHHcC---CCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhc
Confidence 12356789999999999999999753 3458999999999999996 68888764 3567788999999
Q ss_pred HHhhCCCCcEE
Q 001750 718 AHRLGQTNKVM 728 (1018)
Q Consensus 718 ~hRiGQ~k~V~ 728 (1018)
|+|.|......
T Consensus 360 AGR~g~d~~g~ 370 (674)
T PRK01172 360 AGRPGYDQYGI 370 (674)
T ss_pred CCCCCCCCcce
Confidence 99999765533
No 59
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.78 E-value=9.5e-18 Score=203.94 Aligned_cols=107 Identities=23% Similarity=0.411 Sum_probs=88.9
Q ss_pred HHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHH-----HHHHHhcc----CC----CCceEEEeecccc
Q 001750 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ-----IRIDRFNA----KN----SSRFCFLLSTRAG 687 (1018)
Q Consensus 621 ~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq-----~~i~~Fn~----~~----s~~~v~Llstrag 687 (1018)
...+.++|||++.+...+.|...|...++ ..++|.+++.+|. .++++|.. .. .....+||+|+++
T Consensus 269 ~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 269 KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 45678999999999999999999998887 8999999999999 78899975 21 1124589999999
Q ss_pred cccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCc--EEEEEE
Q 001750 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK--VMIFRL 732 (1018)
Q Consensus 688 g~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~--V~Iyrl 732 (1018)
+.|||+.. ++||++..+ +..++||+||++|.|.... +.|+.+
T Consensus 347 erGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999985 999997766 4799999999999998643 444444
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=2.7e-17 Score=198.20 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..+.+.+..+...|..|||||......+.|...|...|+++..++|.....+|..+...|+ .+ .++|+|.
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~---~g--~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQ---KG--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCC---CC--eEEEEcc
Confidence 467999999999988889999999999999999999999999999999999988777766555443 33 4799999
Q ss_pred cccccccCC---------CCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001750 686 AGGLGINLA---------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1018)
Q Consensus 686 agg~GINL~---------~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V 727 (1018)
.+|.|+++. ..++||.|+++-+. .+.|+.||++|.|..-..
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSS 530 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeE
Confidence 999999999 78999999998665 559999999999876543
No 61
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=9.1e-18 Score=173.78 Aligned_cols=313 Identities=19% Similarity=0.268 Sum_probs=220.0
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHH-HHHHHHHHhcC-CCCceEEEeCCccH-HHHHHHHHHHcCCCe--
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGE-RISPHLVVAPLSTL-RNWEREFATWAPQMN-- 360 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiq-ai~~l~~l~~~-~~~p~LIV~P~s~l-~~W~~E~~~~~p~~~-- 360 (1018)
+...|..++--+ .+|+++|.-...|+|||.+ +|+++..+--. +....||+.|+--+ .|-..-+......++
T Consensus 50 PS~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 50 PSAIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred chHHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 344677776555 6899999999999999987 56666655322 22378999997655 566666666654444
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh--ccccccCCcceEEEEcccc
Q 001750 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 361 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~--d~~~l~~i~w~~lIvDEaH 438 (1018)
+....|.+..-+.|+.. ....+||.-|+..+.. ....|+.-...++|+|||.
T Consensus 126 ~hacigg~n~gedikkl--------------------------d~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKL--------------------------DYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred EEEEecCCccchhhhhh--------------------------cccceEeeCCCchHHHHHHhccccccceeEEEeccHH
Confidence 44455555544333332 1356788888887753 3445666677899999999
Q ss_pred cccC--cccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhH
Q 001750 439 RLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (1018)
Q Consensus 439 rlKn--~~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~ 515 (1018)
.+.| .+.++|...+.+. ....+++|||- +.|+..+.++..++..
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv----------------------------- 226 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV----------------------------- 226 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce-----------------------------
Confidence 9855 5678888888887 56788999995 2344433333333321
Q ss_pred HHHHHHhhHhhcCCCcEEEEEEecCCHHH-HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCcc
Q 001750 516 LLRRVKKDVMKELPPKKELILRVELSSKQ-KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1018)
Q Consensus 516 ~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q-~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~ 594 (1018)
...+-+-+++-+- +++|-++-.
T Consensus 227 ----------------rilvkrdeltlEgIKqf~v~ve~----------------------------------------- 249 (400)
T KOG0328|consen 227 ----------------RILVKRDELTLEGIKQFFVAVEK----------------------------------------- 249 (400)
T ss_pred ----------------eEEEecCCCchhhhhhheeeech-----------------------------------------
Confidence 1111122222221 111111000
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCC
Q 001750 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1018)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~ 674 (1018)
..=|+..|..+...|- -...+|||+.....|.|.+.++..++.+..++|.++.++|.+++..|.++.
T Consensus 250 -----------EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~ 316 (400)
T KOG0328|consen 250 -----------EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK 316 (400)
T ss_pred -----------hhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC
Confidence 1115555555555542 247899999999999999999999999999999999999999999998877
Q ss_pred CCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 675 s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
|. +|++|.+-+.||+++..+.||.||.|-|+..|++|+||.+|.|.+- ....||...
T Consensus 317 Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~ 373 (400)
T KOG0328|consen 317 SR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSD 373 (400)
T ss_pred ce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHH
Confidence 75 8999999999999999999999999999999999999999999653 345666654
No 62
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=5.3e-18 Score=187.77 Aligned_cols=356 Identities=19% Similarity=0.253 Sum_probs=213.8
Q ss_pred CChhHHHHHHHHHHHhhc-----CCCceEEEcCCCccHHHH-HHHHHHHHhcCCCC--ceEEEeCCccH-HHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWS-----KQTHVILADEMGLGKTIQ-SIAFLASLFGERIS--PHLVVAPLSTL-RNWEREFATW 355 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~-----~~~~~ILaDemGlGKTiq-ai~~l~~l~~~~~~--p~LIV~P~s~l-~~W~~E~~~~ 355 (1018)
.++|-|...+-|+..-.. ..+.+.++..+|+|||+. +|-++..|.+.... +.|||+|...+ .|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 588999888889855443 366789999999999998 56666666554333 88999997554 7899999999
Q ss_pred cCC--CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCC---cce
Q 001750 356 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQ 430 (1018)
Q Consensus 356 ~p~--~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i---~w~ 430 (1018)
++. +-|+...|...-+...++..- .....+.||+|+|+..+......-++| .-.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~---------------------~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lr 297 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLAS---------------------DPPECRIDILVATPGRLVDHLNNTKSFDLKHLR 297 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhc---------------------CCCccccceEEcCchHHHHhccCCCCcchhhce
Confidence 965 556666676655554444210 011236699999999997654433333 457
Q ss_pred EEEEcccccccCcc--cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHH
Q 001750 431 CMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1018)
Q Consensus 431 ~lIvDEaHrlKn~~--s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1018)
++|||||.||.+.. ..+...+..++...++.+. ..++.+..-..|-.++.. .. .+
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e~---~t------------~~ 354 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSEL---LT------------KL 354 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcCh--------hhhhhhcccCCchhhHHH---Hh------------hc
Confidence 89999999986633 2233333333332222211 111111111111111000 00 00
Q ss_pred HHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCC
Q 001750 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1018)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~ 588 (1018)
..+.|+++.-...+.+.+.|.+ +.+| -..||.++..
T Consensus 355 -~~~~~~l~kL~~satLsqdP~K-----------------------------------------l~~l--~l~~Prl~~v 390 (620)
T KOG0350|consen 355 -GKLYPPLWKLVFSATLSQDPSK-----------------------------------------LKDL--TLHIPRLFHV 390 (620)
T ss_pred -CCcCchhHhhhcchhhhcChHH-----------------------------------------Hhhh--hcCCCceEEe
Confidence 0011111111111111111111 1111 1234433322
Q ss_pred CCCCc---cccHHHHHHHHhhhh--HHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHh----hCCCcEEEEeCCCC
Q 001750 589 VEPDI---EDTNESFKQLLESSG--KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVG 659 (1018)
Q Consensus 589 ~~~~~---~~~~~~~~~li~~S~--Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~rldG~~~ 659 (1018)
..+.. .-+.......+-.+. |-..+..+|.. ....++|+|+........|...|. .-..++-.++|+.+
T Consensus 391 ~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 391 SKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 21100 000011111111222 33445555554 347799999999888777776665 44666777999999
Q ss_pred hHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 660 ~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
+..|.+.+.+|+.++- .+||++.++++||++...+.||.||++-.-..|++|.||..|.||.- ..|.|+..
T Consensus 469 ~k~r~k~l~~f~~g~i---~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~ 539 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDI---NVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK 539 (620)
T ss_pred HHHHHHHHHHHhcCCc---eEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeecc
Confidence 9999999999976544 58999999999999999999999999999999999999999999965 44556654
No 63
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.77 E-value=5.7e-17 Score=199.07 Aligned_cols=360 Identities=15% Similarity=0.123 Sum_probs=199.5
Q ss_pred CChhHHHHHHHHHHHhhcC------CCceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeC-CccHHHHHHHHHHHc
Q 001750 285 SLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWA 356 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~------~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P-~s~l~~W~~E~~~~~ 356 (1018)
-.|+||..||+-+...... .++++|.+.+|+|||++++.++..++... ...+||||| ..+..||..+|..+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 4799999999988777654 46899999999999999999988877543 347999999 467799999999987
Q ss_pred CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc-cccccCC----cceE
Q 001750 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPI----KWQC 431 (1018)
Q Consensus 357 p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d-~~~l~~i----~w~~ 431 (1018)
++.... .++ ...+... .......|+|||.+.+... ...+..+ ...+
T Consensus 318 ~~~~~~--~~s---~~~L~~~------------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 318 KDCAER--IES---IAELKRL------------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred CCCCcc--cCC---HHHHHHH------------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 531110 111 1111110 0112356999999999752 1112111 1238
Q ss_pred EEEcccccccCcccHHHHHHH-hcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHH
Q 001750 432 MIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1018)
Q Consensus 432 lIvDEaHrlKn~~s~~~~~l~-~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~ 510 (1018)
||+|||||.- .......+. .+....+++|||||+...-.+ +...|...|+..
T Consensus 369 vIvDEaHrs~--~~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~--------------t~~~f~~~fg~~----------- 421 (667)
T TIGR00348 369 VIFDEAHRSQ--YGELAKNLKKALKNASFFGFTGTPIFKKDRD--------------TSLTFAYVFGRY----------- 421 (667)
T ss_pred EEEEcCcccc--chHHHHHHHhhCCCCcEEEEeCCCccccccc--------------ccccccCCCCCe-----------
Confidence 9999999853 233445553 466779999999997532111 011111001110
Q ss_pred HhhhHHHHHHHhhHhhc-CCCcEEEEEEec--CCHHHHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhhCcccc
Q 001750 511 MLAPHLLRRVKKDVMKE-LPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPYM 585 (1018)
Q Consensus 511 ~L~p~~lRR~k~dv~~~-lP~k~e~iv~v~--ls~~Q~~~Y~~il~~~~~~l~~~~~~--~~~l~~~l~~Lrk~c~hP~l 585 (1018)
+..|-+ +..+... +-|.....+.++ ++... .+..+............. ...+......+..
T Consensus 422 -i~~Y~~---~~AI~dG~~~~i~Y~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 487 (667)
T TIGR00348 422 -LHRYFI---TDAIRDGLTVKIDYEDRLPEDHLDRKK---LDAFFDEIFELLPERIREITKESLKEKLQKTKK------- 487 (667)
T ss_pred -EEEeeH---HHHhhcCCeeeEEEEecchhhccChHH---HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh-------
Confidence 000111 0111111 112222222221 11111 111111111100000000 0001111111111
Q ss_pred cCCCCCCccccHHHHHHHHhhhhHHHHHHHH-HHHH----HHhCCeEEEEechhhHHHHHHHHHhhC-----CCcEEEEe
Q 001750 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKM-MVKL----KEQGHRVLIYSQFQHMLDLLEDYLTFK-----KWQYERID 655 (1018)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~kl-L~~l----~~~g~kvLIFsq~~~~ldiL~~~L~~~-----g~~~~rld 655 (1018)
++.+...+..+.+. +... ...+.|.+|||........+.+.|... +...+.++
T Consensus 488 -----------------~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s 550 (667)
T TIGR00348 488 -----------------ILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMT 550 (667)
T ss_pred -----------------hhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEec
Confidence 11111112222211 1111 123579999999988877776666432 34556677
Q ss_pred CCCChH---------------------HHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHH
Q 001750 656 GKVGGA---------------------ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQA 714 (1018)
Q Consensus 656 G~~~~~---------------------~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa 714 (1018)
|+.+.. ....++++|.++ +..-+|+++....+|+|.+.++++++.-|--+ +..+|+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~--~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQa 627 (667)
T TIGR00348 551 GKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE--ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQA 627 (667)
T ss_pred CCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC--CCceEEEEEcccccccCCCccceEEEeccccc-cHHHHH
Confidence 764432 234789999764 34457888999999999999999998888664 568999
Q ss_pred HHHHHhh-C-CCCcEEEEEEee
Q 001750 715 MARAHRL-G-QTNKVMIFRLIT 734 (1018)
Q Consensus 715 ~gR~hRi-G-Q~k~V~Iyrlvt 734 (1018)
+||+.|+ + .+....|+.++.
T Consensus 628 i~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 628 IARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHhccccCCCCCCEEEEECcC
Confidence 9999995 4 345577877764
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1.9e-16 Score=192.61 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=108.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..|...+......|.+|||||......+.|...|...|+++..++|.+...++..+...+.. + .++|+|.
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIATd 484 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVATN 484 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEcc
Confidence 4678999999998887889999999999999999999999999999999999887777766655542 2 3799999
Q ss_pred cccccccC---CCCC-----EEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHH
Q 001750 686 AGGLGINL---ATAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1018)
Q Consensus 686 agg~GINL---~~ad-----~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~ 744 (1018)
.+|.|+|+ +.+. +||.||.+-|+..+.|+.||++|.|..-... .|+ |.|+.++.
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~i---s~eD~l~~ 546 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFI---SLEDDLLK 546 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEE---cchHHHHH
Confidence 99999999 4676 9999999999999999999999999765432 233 34555554
No 65
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.74 E-value=3.8e-17 Score=195.59 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..+.+.+..+.+.|..|||||..+...+.|...|...|+++..++|. ..+|+..|-.|... ...++|+|.
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~---~g~VtIATn 461 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGR---KGAVTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCC---CceEEEEec
Confidence 3468888888888888999999999999999999999999999999999998 67889999998542 335899999
Q ss_pred cccccccCCC-------CCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 686 AGGLGINLAT-------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 686 agg~GINL~~-------ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
.+|.|+++.. .-+||.++.+-|+..+.|+.||++|.|..-...
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 9999999988 669999999999999999999999999875544
No 66
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=2.8e-16 Score=173.38 Aligned_cols=311 Identities=19% Similarity=0.317 Sum_probs=212.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHh-cC-C---CC--ceEEEeCCccHHH----HHHHH
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GE-R---IS--PHLVVAPLSTLRN----WEREF 352 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~-~~-~---~~--p~LIV~P~s~l~~----W~~E~ 352 (1018)
..+.|-|..++-.+ .+++.+.+-..+|+|||+.-+.-+.... .. . ++ -.|||+|+--|.- -...|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 36889999998877 7899999999999999988655444433 22 1 22 4599999755533 33345
Q ss_pred HHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----cccccCCc
Q 001750 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIK 428 (1018)
Q Consensus 353 ~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d----~~~l~~i~ 428 (1018)
....|++++.++.|.....+.+..+. ....+|+|.|+..+..- ...+..-.
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk-------------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK-------------------------EEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH-------------------------HhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 55568999999999977666554431 23567999999877532 33344445
Q ss_pred ceEEEEcccccccCc--ccHHHHHHHhcccccEE-EEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHH
Q 001750 429 WQCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRV-LLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1018)
Q Consensus 429 w~~lIvDEaHrlKn~--~s~~~~~l~~l~~~~rl-lLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~ 505 (1018)
-.+||+|||.||-.. ...+...|..+...+|- |.|||-.+ .+
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~-----------------------------------~v 202 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQ-----------------------------------EV 202 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhH-----------------------------------HH
Confidence 679999999999653 45666777777766665 45777410 11
Q ss_pred HHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEec-C--CHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCc
Q 001750 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-L--SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (1018)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~-l--s~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~h 582 (1018)
..|.. .-|| ......|... + +|. ++.+
T Consensus 203 ~dL~r----aGLR-----------Npv~V~V~~k~~~~tPS------------------------~L~~----------- 232 (567)
T KOG0345|consen 203 EDLAR----AGLR-----------NPVRVSVKEKSKSATPS------------------------SLAL----------- 232 (567)
T ss_pred HHHHH----hhcc-----------CceeeeecccccccCch------------------------hhcc-----------
Confidence 11100 0010 0000111000 0 000 0000
Q ss_pred ccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhh--CCCcEEEEeCCCCh
Q 001750 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGG 660 (1018)
Q Consensus 583 P~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~--~g~~~~rldG~~~~ 660 (1018)
-|+ .+.+.-|+..|..+|.. ....|+|||...-...++....|.. .+.++.-++|.+..
T Consensus 233 ~Y~-----------------v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 233 EYL-----------------VCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred eee-----------------EecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 000 12245577777777776 3457999998887777776666643 57789999999999
Q ss_pred HHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001750 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1018)
Q Consensus 661 ~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iy 730 (1018)
..|..++..|....++ +|++|++++.||+++..|.||.||||-+|..+.+|.||..|.|..-...|+
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 9999999999874443 699999999999999999999999999999999999999999987665554
No 67
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.74 E-value=3.2e-16 Score=189.83 Aligned_cols=323 Identities=15% Similarity=0.187 Sum_probs=194.4
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHH----------HHHh--c-C-CCCceEEEeCCc-cHHH
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL----------ASLF--G-E-RISPHLVVAPLS-TLRN 347 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l----------~~l~--~-~-~~~p~LIV~P~s-~l~~ 347 (1018)
...|++.|.+.-+-+...+..++.+|+..++|.|||.|.--++ ..+. . . ..++++|++|.- +..|
T Consensus 158 ~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~q 237 (675)
T PHA02653 158 KIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRL 237 (675)
T ss_pred cccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHH
Confidence 3568888888888888888999999999999999998842222 1111 1 1 234899999964 4466
Q ss_pred HHHHHHHHc-----CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc
Q 001750 348 WEREFATWA-----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA 422 (1018)
Q Consensus 348 W~~E~~~~~-----p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~ 422 (1018)
...++.... +...+.+..|+...... .. .....+++|.|..... .
T Consensus 238 i~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~-~t--------------------------~~k~~~Ilv~T~~L~l---~ 287 (675)
T PHA02653 238 HSITLLKSLGFDEIDGSPISLKYGSIPDELI-NT--------------------------NPKPYGLVFSTHKLTL---N 287 (675)
T ss_pred HHHHHHHHhCccccCCceEEEEECCcchHHh-hc--------------------------ccCCCCEEEEeCcccc---c
Confidence 677776432 34556666665542110 00 0113578888854311 1
Q ss_pred cccCCcceEEEEcccccccCcccHHHHHHHhccc--ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchh
Q 001750 423 SLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1018)
Q Consensus 423 ~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~~--~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~ 500 (1018)
.|. ...+||+||||..-.....+...++.... +..+++|||.- .....+ ..|+...
T Consensus 288 ~L~--~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~-~dv~~l---~~~~~~p---------------- 345 (675)
T PHA02653 288 KLF--DYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE-DDRDRI---KEFFPNP---------------- 345 (675)
T ss_pred ccc--cCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc-HhHHHH---HHHhcCC----------------
Confidence 232 46789999999986555444444444322 35799999972 112111 1222100
Q ss_pred hHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhh
Q 001750 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 580 (1018)
Q Consensus 501 ~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c 580 (1018)
..+. .. ...+.+.....+.....+.+...|-
T Consensus 346 --------------~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~------------------------------- 376 (675)
T PHA02653 346 --------------AFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYI------------------------------- 376 (675)
T ss_pred --------------cEEE-eC---CCcCCCeEEEEeecCcccccchhhh-------------------------------
Confidence 0000 00 0011122222221111111111000
Q ss_pred CcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhC--CCcEEEEeCCC
Q 001750 581 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKV 658 (1018)
Q Consensus 581 ~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~~ 658 (1018)
...|..++..+.......+..+|||+......+.+...|... ++.+..++|++
T Consensus 377 -------------------------~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~L 431 (675)
T PHA02653 377 -------------------------EEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKV 431 (675)
T ss_pred -------------------------HHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCc
Confidence 000111111111111224568999999999999999999876 79999999999
Q ss_pred ChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEc----CC--------CCcchHHHHHHHHHhhCCCCc
Q 001750 659 GGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SD--------WNPHADLQAMARAHRLGQTNK 726 (1018)
Q Consensus 659 ~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D----~d--------wNp~~~~Qa~gR~hRiGQ~k~ 726 (1018)
+.. ++++++|.. ++...+|++|..++.||+++.+++||-++ |. .+...+.||.||++|. ++
T Consensus 432 sq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~ 504 (675)
T PHA02653 432 PNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SP 504 (675)
T ss_pred CHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CC
Confidence 864 566778742 23456899999999999999999999987 22 2566788888888886 46
Q ss_pred EEEEEEeeCCCH
Q 001750 727 VMIFRLITRGSI 738 (1018)
Q Consensus 727 V~Iyrlvt~~Tv 738 (1018)
-.+|+|+++...
T Consensus 505 G~c~rLyt~~~~ 516 (675)
T PHA02653 505 GTYVYFYDLDLL 516 (675)
T ss_pred CeEEEEECHHHh
Confidence 888999988754
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.4e-15 Score=181.58 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|...|.+++..+.+.|..||||++.....+.|...|...|+++..|+|... +|+..+..|.... + .++|+|.
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~-g--~VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR-G--RITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC-C--cEEEEcc
Confidence 456899999999888878889999999999999999999999999999999854 5556666664322 2 3799999
Q ss_pred cccccccCC---CCC-----EEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHH
Q 001750 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1018)
Q Consensus 686 agg~GINL~---~ad-----~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~ 745 (1018)
.+|.|+|+. .+. +||.||.+-|+..|.|++||++|.|..-.+ +.|+ |.|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHh
Confidence 999999998 343 999999999999999999999999975433 3333 345555543
No 69
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.71 E-value=2.9e-16 Score=201.36 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=83.7
Q ss_pred hCCeEEEEechhhHHHHHHHHHhhCC---------------------------------CcEEEEeCCCChHHHHHHHHH
Q 001750 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------------WQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g---------------------------------~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
.+.++|||++.....+.|...|+... +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 47899999999999998888886431 114567899999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhh
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRi 721 (1018)
|.++. ..+|++|.+++.|||+..+|.||.|+++.+...++|++||++|.
T Consensus 323 fK~G~---LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGE---LRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCC---ceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 97643 45899999999999999999999999999999999999999885
No 70
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.71 E-value=8.4e-16 Score=179.97 Aligned_cols=304 Identities=19% Similarity=0.206 Sum_probs=210.2
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv 362 (1018)
...||-|.++++.+ ..++++|.-..||-||++..- |-.++. .|.+|||.|+ |++....+.+..-. +.+.
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCyQ--iPAll~--~G~TLVVSPLiSLM~DQV~~l~~~G--i~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCYQ--IPALLL--EGLTLVVSPLISLMKDQVDQLEAAG--IRAA 85 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHhh--hHHHhc--CCCEEEECchHHHHHHHHHHHHHcC--ceee
Confidence 35888999999877 677999999999999998642 222222 4699999995 77788888887653 5555
Q ss_pred EEecC--hHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcccc
Q 001750 363 MYVGT--SQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 363 ~y~g~--~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~lIvDEaH 438 (1018)
...++ .+.+..+... ......+++..|+|.+... ...|...+..+++|||||
T Consensus 86 ~lnS~l~~~e~~~v~~~------------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 86 YLNSTLSREERQQVLNQ------------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred hhhcccCHHHHHHHHHH------------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 55544 2222222111 0123567999999999765 445678889999999999
Q ss_pred cccCc-------ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHH
Q 001750 439 RLKNK-------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1018)
Q Consensus 439 rlKn~-------~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1018)
-+... ...+......+...-++.||||--+--..|+-..|+.-.+..|.+.
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---------------------- 199 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS---------------------- 199 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec----------------------
Confidence 87543 3445555555566678999998633333333333333222221100
Q ss_pred hhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCC
Q 001750 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1018)
Q Consensus 512 L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~ 591 (1018)
. +. .|+..+.+.
T Consensus 200 --------------------------f--------------------------dR---pNi~~~v~~------------- 211 (590)
T COG0514 200 --------------------------F--------------------------DR---PNLALKVVE------------- 211 (590)
T ss_pred --------------------------C--------------------------CC---chhhhhhhh-------------
Confidence 0 00 001000000
Q ss_pred CccccHHHHHHHHhhhhHHHHHHHHHH-HHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHh
Q 001750 592 DIEDTNESFKQLLESSGKLQLLDKMMV-KLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (1018)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~-~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~F 670 (1018)
..+++.++. .|. .....+...||||......+-+..+|...|++...++|+++.++|+..-++|
T Consensus 212 -------------~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f 276 (590)
T COG0514 212 -------------KGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAF 276 (590)
T ss_pred -------------cccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHH
Confidence 001111111 111 1223345689999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001750 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1018)
Q Consensus 671 n~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~I 729 (1018)
++++.. ++++|.|.|.|||=+....||+||.|-+...|.|-+|||+|-|....+..
T Consensus 277 ~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 277 LNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred hcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE
Confidence 875544 89999999999999999999999999999999999999999998766543
No 71
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=2.4e-16 Score=178.23 Aligned_cols=310 Identities=19% Similarity=0.257 Sum_probs=206.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCCC-----------CceEEEeCC-ccHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI-----------SPHLVVAPL-STLRNWERE 351 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~~-----------~p~LIV~P~-s~l~~W~~E 351 (1018)
.+.|+|..++.-+ ..|++.+.+.++|.|||..- |-++.+++..+. ...||++|+ .+..|-..|
T Consensus 96 ~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 96 KPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred CCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 4678998888755 78999999999999999875 456666665432 257999997 566888899
Q ss_pred HHHHc--CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCC
Q 001750 352 FATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPI 427 (1018)
Q Consensus 352 ~~~~~--p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~--~l~~i 427 (1018)
..++. ..++.++.+|....+...+. ....+|++++|...+..-.. .+..-
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~~~--------------------------~~~gcdIlvaTpGrL~d~~e~g~i~l~ 225 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQLRF--------------------------IKRGCDILVATPGRLKDLIERGKISLD 225 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhhhh--------------------------hccCccEEEecCchhhhhhhcceeehh
Confidence 88876 34666666666554443332 13478999999998864321 22222
Q ss_pred cceEEEEcccccccC---cccHHHHHHHhcc-----cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhch
Q 001750 428 KWQCMIVDEGHRLKN---KDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI 499 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn---~~s~~~~~l~~l~-----~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~ 499 (1018)
.-.++|+|||.++-. ....+.+.+.... ...-++.|||= +
T Consensus 226 ~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtf--------------------p------------ 273 (482)
T KOG0335|consen 226 NCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATF--------------------P------------ 273 (482)
T ss_pred hCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccC--------------------C------------
Confidence 234899999999854 2223334333332 23456666662 0
Q ss_pred hhHHHHHHHHHHhhhHHHH-HHH---hhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 001750 500 NQEEQISRLHRMLAPHLLR-RVK---KDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (1018)
Q Consensus 500 ~~~~~~~~L~~~L~p~~lR-R~k---~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~ 575 (1018)
..++ .+...|+.- .+. .-+...-......+++|.
T Consensus 274 ---~~iq---~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~------------------------------------ 311 (482)
T KOG0335|consen 274 ---KEIQ---RLAADFLKDNYIFLAVGRVGSTSENITQKILFVN------------------------------------ 311 (482)
T ss_pred ---hhhh---hhHHHHhhccceEEEEeeeccccccceeEeeeec------------------------------------
Confidence 0010 100000000 000 000000011111122221
Q ss_pred HHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHH---Hh----CCeEEEEechhhHHHHHHHHHhhCC
Q 001750 576 LRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---EQ----GHRVLIYSQFQHMLDLLEDYLTFKK 648 (1018)
Q Consensus 576 Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~---~~----g~kvLIFsq~~~~ldiL~~~L~~~g 648 (1018)
.+.|...|.++|.... .. -++++||+.-.++.+.|..+|...|
T Consensus 312 ------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 312 ------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG 361 (482)
T ss_pred ------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC
Confidence 2233333444443322 11 2489999999999999999999999
Q ss_pred CcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 649 ~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
+++.-|+|..++.+|.++++.|...... +||+|..++.|||++.+.+||+||.+-+-..|+.|+||.+|.|+.-..+
T Consensus 362 ~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~at 438 (482)
T KOG0335|consen 362 YPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRAT 438 (482)
T ss_pred CCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeE
Confidence 9999999999999999999999765544 8999999999999999999999999999999999999999999987666
Q ss_pred EEE
Q 001750 729 IFR 731 (1018)
Q Consensus 729 Iyr 731 (1018)
.+.
T Consensus 439 sf~ 441 (482)
T KOG0335|consen 439 SFF 441 (482)
T ss_pred EEe
Confidence 543
No 72
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.70 E-value=3.2e-16 Score=174.19 Aligned_cols=307 Identities=18% Similarity=0.286 Sum_probs=202.8
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHH-HHHHHhcCC----CC-ceEEEeCCccH-HHHHHH---HHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER----IS-PHLVVAPLSTL-RNWERE---FAT 354 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~-~l~~l~~~~----~~-p~LIV~P~s~l-~~W~~E---~~~ 354 (1018)
+|.+-|...+.=+ ..|..++.+.-+|+|||+.-+. .+..++... .+ -+|||||+--+ .|-..| +.+
T Consensus 104 ~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 5778888877654 6788999999999999987533 333333322 22 68999998655 454444 445
Q ss_pred HcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc---ccCCcceE
Q 001750 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIKWQC 431 (1018)
Q Consensus 355 ~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~---l~~i~w~~ 431 (1018)
+.+...+.+..|...-+...... .. ..+++|.|+..+...... +..-.-.+
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl-------------------------~k-~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKL-------------------------VK-GCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHh-------------------------hc-cccEEEeCCchHHhHhhcCCcchhhccce
Confidence 56677777766665544322211 12 678999999988643221 11112378
Q ss_pred EEEcccccccCc--ccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHH
Q 001750 432 MIVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1018)
Q Consensus 432 lIvDEaHrlKn~--~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1018)
+|+|||.|+-.. .-.+-+.+..+. ....+|.|||-- ..+..|
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~-----------------------------------~kV~~l 278 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQP-----------------------------------SKVKDL 278 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCc-----------------------------------HHHHHH
Confidence 999999998532 233444444443 334577777730 111111
Q ss_pred HHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCC
Q 001750 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1018)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~ 588 (1018)
.. -++.+ .|-| ++.
T Consensus 279 ~~---------------------------------------~~L~~--------------------------d~~~-v~~ 292 (543)
T KOG0342|consen 279 AR---------------------------------------GALKR--------------------------DPVF-VNV 292 (543)
T ss_pred HH---------------------------------------HhhcC--------------------------CceE-eec
Confidence 10 00000 0000 000
Q ss_pred CCCCccccHHHHHH--HH-hhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHH
Q 001750 589 VEPDIEDTNESFKQ--LL-ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1018)
Q Consensus 589 ~~~~~~~~~~~~~~--li-~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~ 665 (1018)
.........+.+.+ ++ ....++.+|..+|++.... .||+||+....+...+.+.|....+++..|+|..++..|..
T Consensus 293 ~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 293 DDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTS 371 (543)
T ss_pred CCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccch
Confidence 00000000000111 01 1233467777777775543 89999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCc
Q 001750 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (1018)
Q Consensus 666 ~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~ 726 (1018)
...+|....++ +|++|.+++.|+|.+.+|.||-||++-+|.+|++|+||..|-|-+-.
T Consensus 372 ~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 372 TFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred HHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 99999887776 89999999999999999999999999999999999999999775533
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.69 E-value=3.8e-15 Score=170.59 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=71.3
Q ss_pred hCCeEEEEechhhHHHHHHHHHhhCC--CcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEE
Q 001750 623 QGHRVLIYSQFQHMLDLLEDYLTFKK--WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1018)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g--~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VI 700 (1018)
.|.++|||++.....+.+...|+..| +.+..++|.++..+|.++. ...+|++|.+.+.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999998887653 2348999999999999986 4666
Q ss_pred EEcCCCCcchHHHHHHHHH
Q 001750 701 IYDSDWNPHADLQAMARAH 719 (1018)
Q Consensus 701 i~D~dwNp~~~~Qa~gR~h 719 (1018)
++ +-++..++||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 567889999999974
No 74
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.69 E-value=9.9e-16 Score=170.73 Aligned_cols=338 Identities=17% Similarity=0.242 Sum_probs=211.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHh---------cCCCC-ceEEEeCCccH-HHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLF---------GERIS-PHLVVAPLSTL-RNWEREF 352 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~---------~~~~~-p~LIV~P~s~l-~~W~~E~ 352 (1018)
...|-|..++--+ .++++.|...|+|.|||..- |-++..+- +...+ ..+|++|+--| .|-+.|-
T Consensus 267 eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 4677888887644 67899999999999999442 22332221 11234 46889998655 6677777
Q ss_pred HHHcC--CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCc
Q 001750 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIK 428 (1018)
Q Consensus 353 ~~~~p--~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~ 428 (1018)
.+++- .++++...|...--.. .| +-...++++|.|+..+..-. ..|-.-.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq----~f----------------------qls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQ----GF----------------------QLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred HHhcccccceEEEEecccchhhh----hh----------------------hhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 77762 3677777766432111 00 11246789999998875422 1222334
Q ss_pred ceEEEEcccccccCc--ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHH
Q 001750 429 WQCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (1018)
Q Consensus 429 w~~lIvDEaHrlKn~--~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~ 506 (1018)
-.+||+|||.++-.. .-.....|..+ |..|- .| +.+++ +...
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~m-----------Pssn~-----------k~----~tde~----------~~~~ 440 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQM-----------PSSNA-----------KP----DTDEK----------EGEE 440 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhC-----------Ccccc-----------CC----Cccch----------hhHH
Confidence 568999999987432 22233333222 11110 00 11111 1111
Q ss_pred HHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCccccc
Q 001750 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1018)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~ 586 (1018)
++.+.+. ..---.......+.|+|.-..+-+..+. .|..+
T Consensus 441 ~~~~~~~------------~~k~yrqT~mftatm~p~verlar~ylr----------------------------~pv~v 480 (673)
T KOG0333|consen 441 RVRKNFS------------SSKKYRQTVMFTATMPPAVERLARSYLR----------------------------RPVVV 480 (673)
T ss_pred HHHhhcc------------cccceeEEEEEecCCChHHHHHHHHHhh----------------------------CCeEE
Confidence 1111100 0000011223455666654444333322 22211
Q ss_pred C-CCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHH
Q 001750 587 E-GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1018)
Q Consensus 587 ~-~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~ 665 (1018)
. +........-+..-.++..+.|...|.++|... ....+|||.+.....|.|++.|...||++.+|+|+.+.++|..
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 1 111111111111112344567877777777764 3579999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 666 ~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
++..|.++..+ +|++|.++|.||+++.+++||.||..-+-..|+++|||.+|.|+.-.+. -|+|.
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~ 623 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTP 623 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEecc
Confidence 99999886665 8999999999999999999999999999999999999999999876554 34554
No 75
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=4.5e-15 Score=158.81 Aligned_cols=317 Identities=18% Similarity=0.234 Sum_probs=210.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHH-HHHHHHHHhcCCCC-ceEEEeCCccHHHHHHH-HHHHc--CCC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTLRNWERE-FATWA--PQM 359 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiq-ai~~l~~l~~~~~~-p~LIV~P~s~l~~W~~E-~~~~~--p~~ 359 (1018)
+..|-|...+-.+ -.|++||=+.-+|+|||.. ++-++..|.....+ -.||++|+.-+.--..| |.-.. -++
T Consensus 29 ~pTpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 4667888888665 5799999999999999976 56666666666666 56999998766444444 43332 356
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-cccCC-----cceEEE
Q 001750 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-SLKPI-----KWQCMI 433 (1018)
Q Consensus 360 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~-~l~~i-----~w~~lI 433 (1018)
++.+++|..+--.... .-..+.|||++|++.+..... .+... +..++|
T Consensus 105 K~~vivGG~d~i~qa~--------------------------~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAA--------------------------ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred eEEEEEccHHHhhhhh--------------------------hcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 7778887755321111 012467999999998853211 11112 346899
Q ss_pred EcccccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHH
Q 001750 434 VDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1018)
Q Consensus 434 vDEaHrlKn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~ 510 (1018)
+|||.++-+.. -.+......+. .+..+++|||= .+++.+++.
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~---------------------------------- 203 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG---------------------------------- 203 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc----------------------------------
Confidence 99999986532 11112222222 23567788773 222222110
Q ss_pred HhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCC
Q 001750 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1018)
Q Consensus 511 ~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~ 590 (1018)
.|-.. +.+|..+...
T Consensus 204 -----------------~~i~k------------------------------------------------~~a~~~e~~~ 218 (442)
T KOG0340|consen 204 -----------------CPITK------------------------------------------------SIAFELEVID 218 (442)
T ss_pred -----------------CCccc------------------------------------------------ccceEEeccC
Confidence 00000 0000000000
Q ss_pred CCccccHHHH---HHHHhhhhHHHHHHHHHHHHHH-hCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHH
Q 001750 591 PDIEDTNESF---KQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1018)
Q Consensus 591 ~~~~~~~~~~---~~li~~S~Kl~~L~klL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~ 666 (1018)
+. ...+.+ .-++...+|-..|..+|....+ ....++||.|-+....+|.-.|+..++.+..+++.+++.+|-.+
T Consensus 219 ~v--stvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 219 GV--STVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred CC--CchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 00 000000 1122345677888889988877 56789999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCH
Q 001750 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1018)
Q Consensus 667 i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~Tv 738 (1018)
+.+|.++. .-+|++|.+++.|+++++++.||.||.+-.|..|++|.||.-|.|..-.. .-+++...|
T Consensus 297 LsrFrs~~---~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a--iSivt~rDv 363 (442)
T KOG0340|consen 297 LSRFRSNA---ARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA--ISIVTQRDV 363 (442)
T ss_pred HHHHhhcC---ccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcce--EEEechhhH
Confidence 99997644 45899999999999999999999999999999999999999888865432 234544333
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.68 E-value=5.8e-15 Score=189.06 Aligned_cols=292 Identities=16% Similarity=0.205 Sum_probs=183.5
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCC--C
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~--~ 359 (1018)
|.++.++|..++..+ ..+.++++..+||+|||..++..+..+. .....+|||+|+ .++.|+...+..++.. +
T Consensus 78 G~~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 346889999887655 5788999999999999975544443332 233589999996 5668999999998754 3
Q ss_pred eEEEEecChH----HHH-HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEE
Q 001750 360 NVVMYVGTSQ----ARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (1018)
Q Consensus 360 ~vv~y~g~~~----~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIv 434 (1018)
.+.+..|... .+. ..... ....++|+|+|++.+......+....+++|||
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l-------------------------~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERL-------------------------KEGDFDILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhccccccCEEEE
Confidence 4433333321 111 11100 12358999999999987666666667999999
Q ss_pred cccccccCcc--------------cHHHHHHHhcc-------------------------cccEEEEecCCCCCCHHH-H
Q 001750 435 DEGHRLKNKD--------------SKLFSSLKQYS-------------------------TRHRVLLTGTPLQNNLDE-L 474 (1018)
Q Consensus 435 DEaHrlKn~~--------------s~~~~~l~~l~-------------------------~~~rllLTgTPlqN~~~E-L 474 (1018)
||||++-... ..+..++..+. ....++.|||.-+..... +
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l 287 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL 287 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH
Confidence 9999974311 11112222221 123456666652211100 0
Q ss_pred HHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHH
Q 001750 475 FMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTR 554 (1018)
Q Consensus 475 ~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~ 554 (1018)
+. ..+. +.+.
T Consensus 288 ~~---------------------------------~ll~----------------------~~v~--------------- 297 (1176)
T PRK09401 288 FR---------------------------------ELLG----------------------FEVG--------------- 297 (1176)
T ss_pred hh---------------------------------ccce----------------------EEec---------------
Confidence 00 0000 0000
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechh
Q 001750 555 NYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ 634 (1018)
Q Consensus 555 ~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~ 634 (1018)
.... .++.+ .|-|.. ...|...|.+++..+ |..+|||++..
T Consensus 298 ---------~~~~-------~~rnI-~~~yi~-------------------~~~k~~~L~~ll~~l---~~~~LIFv~t~ 338 (1176)
T PRK09401 298 ---------SPVF-------YLRNI-VDSYIV-------------------DEDSVEKLVELVKRL---GDGGLIFVPSD 338 (1176)
T ss_pred ---------Cccc-------ccCCc-eEEEEE-------------------cccHHHHHHHHHHhc---CCCEEEEEecc
Confidence 0000 00000 111110 012445555666543 56899999987
Q ss_pred hH---HHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEee----cccccccccCCC-CCEEEEEcCCC
Q 001750 635 HM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW 706 (1018)
Q Consensus 635 ~~---ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Lls----tragg~GINL~~-ad~VIi~D~dw 706 (1018)
.. ++.|.++|...|+++..++|++ +..+++|.++..+ +||+ |..++.|||++. ..+||+||.|-
T Consensus 339 ~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 339 KGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred cChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 76 9999999999999999999998 2346999765543 6777 689999999998 89999999986
Q ss_pred ------CcchHHHHHHHHHhh
Q 001750 707 ------NPHADLQAMARAHRL 721 (1018)
Q Consensus 707 ------Np~~~~Qa~gR~hRi 721 (1018)
.......+++|.-.+
T Consensus 411 ~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 411 FKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEeccccccCHHHHHHHHhh
Confidence 566777888888744
No 77
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.67 E-value=8e-15 Score=164.18 Aligned_cols=325 Identities=16% Similarity=0.250 Sum_probs=221.9
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCCCC-----ceEEEeCCccH-HHHHHHHHHHc-
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-----PHLVVAPLSTL-RNWEREFATWA- 356 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~~~-----p~LIV~P~s~l-~~W~~E~~~~~- 356 (1018)
.+..-|...+-.. -.|..+|=|.-+|+|||+.- +.+|..|+...++ -.|||.|+--| .|--.-+.+..
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 4677888887543 57889999999999999874 5577777776544 57999997555 45444444432
Q ss_pred -CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc---cccccCCcceEE
Q 001750 357 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCM 432 (1018)
Q Consensus 357 -p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d---~~~l~~i~w~~l 432 (1018)
-++..-.+.|..+...... .....+|+|+|+..+... ...|..-...+|
T Consensus 167 ~h~fSaGLiiGG~~~k~E~e---------------------------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELE---------------------------RISQMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred ccccccceeecCchhHHHHH---------------------------hhhcCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 2566666777765432211 123568999999998754 334566678899
Q ss_pred EEcccccccCc--ccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHH
Q 001750 433 IVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1018)
Q Consensus 433 IvDEaHrlKn~--~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1018)
|+|||.|+-.. ...+-..+..+. .+..||.|||+- +++.+|.-| ++-+|.
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaRL-sL~dP~------------------------- 272 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT-KSVKDLARL-SLKDPV------------------------- 272 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccc-hhHHHHHHh-hcCCCc-------------------------
Confidence 99999998643 334445555554 456799999983 233332211 111111
Q ss_pred HHhhhHHHHHHHhhHhhcCCCcEEEEEE---ecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCccccc
Q 001750 510 RMLAPHLLRRVKKDVMKELPPKKELILR---VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1018)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~lP~k~e~iv~---v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~ 586 (1018)
...|. +.-+|.+ |++ .|++
T Consensus 273 -----------------------~vsvhe~a~~atP~~-------------------------------L~Q----~y~~ 294 (758)
T KOG0343|consen 273 -----------------------YVSVHENAVAATPSN-------------------------------LQQ----SYVI 294 (758)
T ss_pred -----------------------EEEEeccccccChhh-------------------------------hhh----eEEE
Confidence 11111 0111111 111 0111
Q ss_pred CCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhh--CCCcEEEEeCCCChHHHH
Q 001750 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQ 664 (1018)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~--~g~~~~rldG~~~~~~Rq 664 (1018)
+....|+..|...|.... ..|.|||...-.....+...+.. -|++...++|.+++..|-
T Consensus 295 -----------------v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 295 -----------------VPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred -----------------EehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 123447777777776544 35899998888887777776643 499999999999999999
Q ss_pred HHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHH
Q 001750 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1018)
Q Consensus 665 ~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~ 744 (1018)
.+..+|.... -++|.+|..++.||+++.+|.||-+|-|-+...|++|.||.-|.+..-...+| ..-+-||.++.
T Consensus 356 ev~~~F~~~~---~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~---L~psEeE~~l~ 429 (758)
T KOG0343|consen 356 EVYKKFVRKR---AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM---LTPSEEEAMLK 429 (758)
T ss_pred HHHHHHHHhc---ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE---EcchhHHHHHH
Confidence 9999997533 35899999999999999999999999999999999999999999877666543 23455688888
Q ss_pred HHHHHH
Q 001750 745 MTKKKM 750 (1018)
Q Consensus 745 ~~~~K~ 750 (1018)
..++|.
T Consensus 430 ~Lq~k~ 435 (758)
T KOG0343|consen 430 KLQKKK 435 (758)
T ss_pred HHHHcC
Confidence 777764
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.67 E-value=6.1e-15 Score=172.17 Aligned_cols=302 Identities=18% Similarity=0.287 Sum_probs=202.6
Q ss_pred CCChhHHHHHHHHHHHhhcCC--CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH-HHHHHHHHHHcC--C
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--Q 358 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~--~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~~W~~E~~~~~p--~ 358 (1018)
.+|...|..+++-+..-.... .+-+|--++|+|||+.|+..+......+ .-...++|+.++ .|-.+.+.+|++ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 468889999998775444443 3568889999999999877666665544 377889999888 678889999996 5
Q ss_pred CeEEEEecChHHHH--HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcc
Q 001750 359 MNVVMYVGTSQARN--IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~--~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDE 436 (1018)
++|...+|.-...+ .+.+. ......++||-|+..+.....+- +..+||+||
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~------------------------l~~G~~~ivVGTHALiQd~V~F~---~LgLVIiDE 392 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQ------------------------LASGEIDIVVGTHALIQDKVEFH---NLGLVIIDE 392 (677)
T ss_pred CeEEEeecccchhHHHHHHHH------------------------HhCCCCCEEEEcchhhhcceeec---ceeEEEEec
Confidence 77888888754433 22111 12346789999999987544332 457999999
Q ss_pred cccccCcccHHHHHHHhc-c-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhh
Q 001750 437 GHRLKNKDSKLFSSLKQY-S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1018)
Q Consensus 437 aHrlKn~~s~~~~~l~~l-~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1018)
=||+.- .....|..- . ..|.|.|||||++-.+. ...|+++..
T Consensus 393 QHRFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDldv------------- 436 (677)
T COG1200 393 QHRFGV---HQRLALREKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLDV------------- 436 (677)
T ss_pred cccccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHH--------------------HHHhccccc-------------
Confidence 999843 233333333 2 57999999999865531 112222211
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHH-HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCc
Q 001750 515 HLLRRVKKDVMKELPPKKELILRVELSSKQ-KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q-~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~ 593 (1018)
.+++.+|+...-|...-+...+ .++|+.|
T Consensus 437 --------S~IdElP~GRkpI~T~~i~~~~~~~v~e~i------------------------------------------ 466 (677)
T COG1200 437 --------SIIDELPPGRKPITTVVIPHERRPEVYERI------------------------------------------ 466 (677)
T ss_pred --------hhhccCCCCCCceEEEEeccccHHHHHHHH------------------------------------------
Confidence 2345788763333222222111 1222221
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhH--------HHHHHHHHh--hCCCcEEEEeCCCChHHH
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM--------LDLLEDYLT--FKKWQYERIDGKVGGAER 663 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~--------ldiL~~~L~--~~g~~~~rldG~~~~~~R 663 (1018)
.+-..+|+++.+.|.-+.. ...+...|. ..++++..++|.++++++
T Consensus 467 ------------------------~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eK 522 (677)
T COG1200 467 ------------------------REEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEK 522 (677)
T ss_pred ------------------------HHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHH
Confidence 1112245666666554332 122223332 236779999999999999
Q ss_pred HHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCC-CCcchHHHHHHHHHhhCCCCc
Q 001750 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNK 726 (1018)
Q Consensus 664 q~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~d-wNp~~~~Qa~gR~hRiGQ~k~ 726 (1018)
++++.+|+++..+ +|+||.+..+|||++.|...||++.+ +--++.-|-.||++|=+...-
T Consensus 523 d~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSy 583 (677)
T COG1200 523 DAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSY 583 (677)
T ss_pred HHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceE
Confidence 9999999875554 89999999999999999999999986 677888999999999554433
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.67 E-value=4.8e-15 Score=184.45 Aligned_cols=329 Identities=20% Similarity=0.236 Sum_probs=221.3
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCCCCceEEEeCCccH-HHHHHHHHHHc---C-C
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTL-RNWEREFATWA---P-Q 358 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~s~l-~~W~~E~~~~~---p-~ 358 (1018)
.|+.||.++++.+ .+|+++|+...||+|||... +.++..+........|+|-|+..| ......|.+|. | .
T Consensus 70 ~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 70 RLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred cccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 4999999999877 78899999999999999986 556667777766799999996555 66777788876 4 5
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc------cccccCCcceEE
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPIKWQCM 432 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d------~~~l~~i~w~~l 432 (1018)
+++..|+|+........ + -..+.+|++|+|+|+... ......-.+.+|
T Consensus 146 v~~~~y~Gdt~~~~r~~---~-----------------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~l 199 (851)
T COG1205 146 VTFGRYTGDTPPEERRA---I-----------------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYL 199 (851)
T ss_pred ceeeeecCCCChHHHHH---H-----------------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEE
Confidence 67888999755432110 0 124679999999999641 111112247899
Q ss_pred EEcccccccCc-ccHHHHHHHhcc--------cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHH
Q 001750 433 IVDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1018)
Q Consensus 433 IvDEaHrlKn~-~s~~~~~l~~l~--------~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~ 503 (1018)
||||+|-+++. .|.+.-.++.+. ....++.|||- .+..+|...+....-.
T Consensus 200 VvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~- 258 (851)
T COG1205 200 VVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE- 258 (851)
T ss_pred EEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce-
Confidence 99999999874 333333333331 34668888884 2333343333211000
Q ss_pred HHHHHHHHhhhHHHHHHHhhHhhc-CCCcEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhC
Q 001750 504 QISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVEL-SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1018)
Q Consensus 504 ~~~~L~~~L~p~~lRR~k~dv~~~-lP~k~e~iv~v~l-s~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~ 581 (1018)
..+..+ -|....+.+.-.. .......
T Consensus 259 ------------------~~v~~~g~~~~~~~~~~~~p~~~~~~~~---------------------------------- 286 (851)
T COG1205 259 ------------------VPVDEDGSPRGLRYFVRREPPIRELAES---------------------------------- 286 (851)
T ss_pred ------------------eeccCCCCCCCceEEEEeCCcchhhhhh----------------------------------
Confidence 001111 1222122221111 0000000
Q ss_pred cccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHH----HHHhhCC----CcEEE
Q 001750 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKK----WQYER 653 (1018)
Q Consensus 582 hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~----~~L~~~g----~~~~r 653 (1018)
..-.+...+..++..+...|-++|+|+.+...+..+. ..+...+ ..+..
T Consensus 287 -----------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 287 -----------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred -----------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 0123566677778888889999999999999988885 3333344 56888
Q ss_pred EeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCC-CcchHHHHHHHHHhhCCCCcEEEEEE
Q 001750 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVMIFRL 732 (1018)
Q Consensus 654 ldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dw-Np~~~~Qa~gR~hRiGQ~k~V~Iyrl 732 (1018)
+.|++...+|..+...|..++ +.++++|.|+-.||++.+.|.||.+--+- .-....|+.||++|-||.-.+ +..
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~---~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~--~~v 418 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGE---LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV--LVV 418 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCC---ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE--EEE
Confidence 899999999999999997654 45899999999999999999999999988 778999999999999954332 223
Q ss_pred eeCCCHHHHHHH
Q 001750 733 ITRGSIEERMMQ 744 (1018)
Q Consensus 733 vt~~TvEe~i~~ 744 (1018)
.-.+-++..+..
T Consensus 419 ~~~~~~d~yy~~ 430 (851)
T COG1205 419 LRSDPLDSYYLR 430 (851)
T ss_pred eCCCccchhhhh
Confidence 336666666544
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.67 E-value=2.7e-14 Score=175.70 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=103.5
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv 362 (1018)
..|.++|.++++.+...+ .+..++|...+|.|||...+..+......+ +.+||++|. .+..|+.+.|.+.+ +..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF-GAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCCEE
Confidence 469999999998885543 456789999999999999887776655543 479999996 56799999999887 46788
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccC
Q 001750 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1018)
Q Consensus 363 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn 442 (1018)
+++|..........+.- ......+|+|+|+..+.. .--+..+|||||+|...-
T Consensus 220 ~~~s~~s~~~r~~~~~~----------------------~~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 220 VLHSGLSDGERLDEWRK----------------------AKRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEECCCCHHHHHHHHHH----------------------HHcCCCCEEEeccHHhcc-----cccCCCEEEEECCCcccc
Confidence 88876443322111100 012346899999876631 223567999999997632
Q ss_pred c--ccHHH-----HHHH-hcccccEEEEecCC
Q 001750 443 K--DSKLF-----SSLK-QYSTRHRVLLTGTP 466 (1018)
Q Consensus 443 ~--~s~~~-----~~l~-~l~~~~rllLTgTP 466 (1018)
. ..-.+ ..++ .......+++||||
T Consensus 273 ~~~~~p~y~~r~va~~ra~~~~~~~il~SATp 304 (679)
T PRK05580 273 KQQEGPRYHARDLAVVRAKLENIPVVLGSATP 304 (679)
T ss_pred ccCcCCCCcHHHHHHHHhhccCCCEEEEcCCC
Confidence 1 11111 1111 22345678999999
No 81
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.66 E-value=1.8e-15 Score=178.29 Aligned_cols=352 Identities=16% Similarity=0.194 Sum_probs=215.3
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCC-ceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeC-CccHHHHHHHHHHHcCC
Q 001750 282 SGGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQ 358 (1018)
Q Consensus 282 ~~~~L~~yQ~egv~wl~~~~~~~~-~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P-~s~l~~W~~E~~~~~p~ 358 (1018)
....+|+||..+++.+...+.+|+ .++|.+.+|+|||.+||+++..|++.+ .+++|.++- ++++.|=..+|..+.|+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 345799999999999988887764 589999999999999999999998765 569999999 67888988899999998
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-------cccCCcceE
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQC 431 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~-------~l~~i~w~~ 431 (1018)
...+....... ....+.|.|.||.++..... .+..-.|++
T Consensus 242 ~~~~n~i~~~~---------------------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDl 288 (875)
T COG4096 242 GTKMNKIEDKK---------------------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDL 288 (875)
T ss_pred ccceeeeeccc---------------------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeE
Confidence 76665443221 11257899999999975422 233335999
Q ss_pred EEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHH
Q 001750 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1018)
Q Consensus 432 lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1018)
||||||||- . .+.++.+..+-...+++|||||-..--..-| ..|. +...
T Consensus 289 IvIDEaHRg--i-~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~--------------~~F~---g~Pt----------- 337 (875)
T COG4096 289 IVIDEAHRG--I-YSEWSSILDYFDAATQGLTATPKETIDRSTY--------------GFFN---GEPT----------- 337 (875)
T ss_pred EEechhhhh--H-HhhhHHHHHHHHHHHHhhccCcccccccccc--------------cccC---CCcc-----------
Confidence 999999983 2 2233355555566777889999542111111 1110 0000
Q ss_pred hhhHHHHHHHhhHhh-cCCCcEEEE--EEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCC
Q 001750 512 LAPHLLRRVKKDVMK-ELPPKKELI--LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1018)
Q Consensus 512 L~p~~lRR~k~dv~~-~lP~k~e~i--v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~ 588 (1018)
...-.+..|.+ .|-|...+- +.+..... .|...-.+ +.+ -.+. +..
T Consensus 338 ----~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~---~~~~~ser--ek~----------------~g~~------i~~ 386 (875)
T COG4096 338 ----YAYSLEEAVEDGFLVPYKVIRIDTDFDLDGW---KPDAGSER--EKL----------------QGEA------IDE 386 (875)
T ss_pred ----eeecHHHHhhccccCCCCceEEeeeccccCc---CcCccchh--hhh----------------hccc------cCc
Confidence 00001111221 122222222 22221110 01100000 000 0000 000
Q ss_pred CCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHh---C---CeEEEEechhhHHHHHHHHHhhC-----CCcEEEEeCC
Q 001750 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ---G---HRVLIYSQFQHMLDLLEDYLTFK-----KWQYERIDGK 657 (1018)
Q Consensus 589 ~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~---g---~kvLIFsq~~~~ldiL~~~L~~~-----g~~~~rldG~ 657 (1018)
++...... .+...+--..--..+.+.+.....+ | .|.||||......+.|...|... |--...|+|.
T Consensus 387 -dd~~~~~~-d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 387 -DDQNFEAR-DFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred -cccccccc-ccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 00000000 0000011112233444445444443 3 49999999999999988888542 3335568887
Q ss_pred CChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhh-------CCCC-cEEE
Q 001750 658 VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL-------GQTN-KVMI 729 (1018)
Q Consensus 658 ~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRi-------GQ~k-~V~I 729 (1018)
.. +-+..|+.|-. +...-.+.+|...+..|||.+.+-.++++-.--+-..+.|.+||.-|+ ||.| ...|
T Consensus 465 ~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~i 541 (875)
T COG4096 465 AE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTI 541 (875)
T ss_pred ch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEE
Confidence 54 44677899976 334445799999999999999999999999999999999999999996 2433 3567
Q ss_pred EEEe
Q 001750 730 FRLI 733 (1018)
Q Consensus 730 yrlv 733 (1018)
+.++
T Consensus 542 fDf~ 545 (875)
T COG4096 542 FDFV 545 (875)
T ss_pred EEhh
Confidence 6665
No 82
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.65 E-value=2.8e-16 Score=168.67 Aligned_cols=339 Identities=19% Similarity=0.305 Sum_probs=220.7
Q ss_pred CCCccccccccCCCCCC-----C-CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHh--------c
Q 001750 266 KKPKEFQQYEHSPEFLS-----G-GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLF--------G 330 (1018)
Q Consensus 266 ~~~~~~~~~~~~P~~~~-----~-~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~--------~ 330 (1018)
++.+.|...+.+...+. | ....|.|..|+--+ -.|+..|=..-+|+|||++. +.++...+ .
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~ 242 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFA 242 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccc
Confidence 44556666655544332 1 25778899987544 56777787778999999773 33333222 1
Q ss_pred CCCCce-EEEeCCccHH-HHHHHHHHH--------cCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCcccccc
Q 001750 331 ERISPH-LVVAPLSTLR-NWEREFATW--------APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSES 400 (1018)
Q Consensus 331 ~~~~p~-LIV~P~s~l~-~W~~E~~~~--------~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 400 (1018)
.+.||+ |||||..-+. |-..-+..+ .|.++.....|.-..+..+...
T Consensus 243 ~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v----------------------- 299 (610)
T KOG0341|consen 243 RGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV----------------------- 299 (610)
T ss_pred cCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH-----------------------
Confidence 234565 9999976553 333323333 2677777777776666544321
Q ss_pred ccccccccEEEccHHHHhhc--cccccCCcceEEEEcccccccCc--ccHHHHHHHhccc-ccEEEEecCCCCCCHHHHH
Q 001750 401 KQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELF 475 (1018)
Q Consensus 401 ~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~lIvDEaHrlKn~--~s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~ 475 (1018)
....|+++.|+..+..- ...+..--..++.+|||.|+-.. ...+...+..|+. +..||.|||-
T Consensus 300 ---~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM--------- 367 (610)
T KOG0341|consen 300 ---RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM--------- 367 (610)
T ss_pred ---hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc---------
Confidence 23568999999877532 11111112457999999998543 3344444445553 4568889883
Q ss_pred HHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHH
Q 001750 476 MLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRN 555 (1018)
Q Consensus 476 ~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~ 555 (1018)
|.. .+.|.. ..+++| ..|.|.
T Consensus 368 -------P~K-------IQ~FAk----------SALVKP-------------------vtvNVG---------------- 388 (610)
T KOG0341|consen 368 -------PKK-------IQNFAK----------SALVKP-------------------VTVNVG---------------- 388 (610)
T ss_pred -------cHH-------HHHHHH----------hhcccc-------------------eEEecc----------------
Confidence 100 000100 011111 111111
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhh
Q 001750 556 YQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH 635 (1018)
Q Consensus 556 ~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~ 635 (1018)
.....-++++.+ -..+..-+|+..|.+.|++ ..-.||||+.-..
T Consensus 389 --------RAGAAsldViQe-------------------------vEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 389 --------RAGAASLDVIQE-------------------------VEYVKQEAKIVYLLECLQK---TSPPVLIFAEKKA 432 (610)
T ss_pred --------cccccchhHHHH-------------------------HHHHHhhhhhhhHHHHhcc---CCCceEEEecccc
Confidence 011111222211 1334556787777776655 5679999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHH
Q 001750 636 MLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAM 715 (1018)
Q Consensus 636 ~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~ 715 (1018)
-.|-|-+||-.+|+..+.|+|+-.+++|..+|+.|..+..+ +|++|.+++-|++++...+||.||.+-.-.+|..|+
T Consensus 433 DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRI 509 (610)
T KOG0341|consen 433 DVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRI 509 (610)
T ss_pred ChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999886665 799999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEEEeeCCCHHHHHH
Q 001750 716 ARAHRLGQTNKVMIFRLITRGSIEERMM 743 (1018)
Q Consensus 716 gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~ 743 (1018)
||.+|-|.+--.+ .||-+++-|..++
T Consensus 510 GRTGRsg~~GiAT--TfINK~~~esvLl 535 (610)
T KOG0341|consen 510 GRTGRSGKTGIAT--TFINKNQEESVLL 535 (610)
T ss_pred cccCCCCCcceee--eeecccchHHHHH
Confidence 9999998765433 4666666554443
No 83
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=4.3e-16 Score=151.60 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccc
Q 001750 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1018)
Q Consensus 608 ~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstrag 687 (1018)
.|+..+..++....+.+.++|||++.....+.+.++|...+..+..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888998887767899999999999999999999988999999999999999999999998755 4589999999
Q ss_pred cccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001750 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1018)
Q Consensus 688 g~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iy 730 (1018)
++|+|++.+++||+++++||+..++|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877764
No 84
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=2.1e-14 Score=160.42 Aligned_cols=121 Identities=17% Similarity=0.374 Sum_probs=93.1
Q ss_pred hhhHHH--HHHHHHHHHHH--hCCeEEEEechhhHHHHH----HHHHhh------------------CCCcEEEEeCCCC
Q 001750 606 SSGKLQ--LLDKMMVKLKE--QGHRVLIYSQFQHMLDLL----EDYLTF------------------KKWQYERIDGKVG 659 (1018)
Q Consensus 606 ~S~Kl~--~L~klL~~l~~--~g~kvLIFsq~~~~ldiL----~~~L~~------------------~g~~~~rldG~~~ 659 (1018)
-.+|+. .|..+|....+ ...|+|||..-.++.+.= ...|.. .+.++.|++|+++
T Consensus 403 VPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~ 482 (708)
T KOG0348|consen 403 VPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSME 482 (708)
T ss_pred cCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchh
Confidence 344443 34445544332 245889998777765543 333321 2457999999999
Q ss_pred hHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001750 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1018)
Q Consensus 660 ~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~I 729 (1018)
+++|..+++.|..... ++|++|++++.||+|+.+..||-||++..|..++.|+||.-|+|-+-.-..
T Consensus 483 QeeRts~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL 549 (708)
T KOG0348|consen 483 QEERTSVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL 549 (708)
T ss_pred HHHHHHHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE
Confidence 9999999999976544 489999999999999999999999999999999999999999998765543
No 85
>COG4889 Predicted helicase [General function prediction only]
Probab=99.64 E-value=4.9e-15 Score=172.18 Aligned_cols=402 Identities=17% Similarity=0.180 Sum_probs=206.6
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHc-CCCe
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMN 360 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~-p~~~ 360 (1018)
..+|||||.++++-....+..+.+|=|.+.+|+|||.+++-+...+.. ..+|.+||. ++|.|--+|...-. -+++
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~~ 235 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDFR 235 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHHhhccCccce
Confidence 468999999999998888888889999999999999999998887755 588999995 78888666654322 1233
Q ss_pred -EEEEecChHHHH--HHHHhhhcCCCCchh--hhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEE
Q 001750 361 -VVMYVGTSQARN--IIREYEFYFPKNPKK--VKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMI 433 (1018)
Q Consensus 361 -vv~y~g~~~~r~--~i~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~lI 433 (1018)
+.+...++.+|. .|.-+++-+|..... .... ....+...+--||++||+.+..-. ....--.|++||
T Consensus 236 a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~------~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDlii 309 (1518)
T COG4889 236 ASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSE------MEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLII 309 (1518)
T ss_pred eEEEecCccccccccccccccCCCCCcccHHHHHHH------HHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEE
Confidence 334443443433 233333333332210 0000 001122334569999999986543 334555799999
Q ss_pred EcccccccCc------ccHHHHHH--HhcccccEEEEecCCCC------CCHHHHHHHHHhhcCCCCCChHHHHHHHhch
Q 001750 434 VDEGHRLKNK------DSKLFSSL--KQYSTRHRVLLTGTPLQ------NNLDELFMLMHFLDAGKFGSLEEFQEEFKDI 499 (1018)
Q Consensus 434 vDEaHrlKn~------~s~~~~~l--~~l~~~~rllLTgTPlq------N~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~ 499 (1018)
+|||||--+. .|.+.+.- ..+++..||.|||||-- .+..+--..+ ..+.+...|.++|..+
T Consensus 310 cDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l-----~SMDDe~~fGeef~rl 384 (1518)
T COG4889 310 CDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL-----SSMDDELTFGEEFHRL 384 (1518)
T ss_pred ecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee-----eccchhhhhchhhhcc
Confidence 9999996431 12111111 12346689999999921 1111111111 1122333444444433
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHH
Q 001750 500 NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-RGGAQISLINVVMELRK 578 (1018)
Q Consensus 500 ~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~-~~~~~~~l~~~l~~Lrk 578 (1018)
.-.+.+++ + -|......++.|.-...+..+-..+ ..-...|.. ..+......|-|+.--.
T Consensus 385 ~FgeAv~r---------------d---lLTDYKVmvlaVd~~~i~~~~~~~~-~~~~~~L~~dd~~kIvG~wnGlakr~g 445 (1518)
T COG4889 385 GFGEAVER---------------D---LLTDYKVMVLAVDKEVIAGVLQSVL-SGPSKGLALDDVSKIVGCWNGLAKRNG 445 (1518)
T ss_pred cHHHHHHh---------------h---hhccceEEEEEechhhhhhhhhhhc-cCcccccchhhhhhhhhhhhhhhhhcc
Confidence 32222211 1 1334445555554211111111000 000000000 00000111111111100
Q ss_pred hhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCC
Q 001750 579 LCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKV 658 (1018)
Q Consensus 579 ~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~ 658 (1018)
-..|-.-......+....-++..-++.|.++.-.-.-+.... ..++..+ .....++..-+||.|
T Consensus 446 -~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y--------------~~Elk~d-~~nL~iSi~HvDGtm 509 (1518)
T COG4889 446 -EDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAY--------------DEELKKD-FKNLKISIDHVDGTM 509 (1518)
T ss_pred -ccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------HHHHHhc-CCCceEEeecccccc
Confidence 000000000000011111122222333333322111111000 0112222 222345677799999
Q ss_pred ChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCC-cEEEEEEe
Q 001750 659 GGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLI 733 (1018)
Q Consensus 659 ~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k-~V~Iyrlv 733 (1018)
+..+|......-|.-......+|-..|++++|+++++.|.||||||--+-...+||.||+-|....| .-+|.-.|
T Consensus 510 Nal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 510 NALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred cHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 9999965554443324444457889999999999999999999999877777899999999976543 34544444
No 86
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.64 E-value=5.5e-15 Score=167.64 Aligned_cols=310 Identities=18% Similarity=0.251 Sum_probs=205.5
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCCC-CceEEEeCCccH-HHHHHHHHHHcC---CC
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI-SPHLVVAPLSTL-RNWEREFATWAP---QM 359 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~~-~p~LIV~P~s~l-~~W~~E~~~~~p---~~ 359 (1018)
..+-|..++-.. ..+-..|+-.-.|+|||+.- ++.+..|-.... --.+||+|+--+ .|-+..|...+| ++
T Consensus 48 ptkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 345677766533 45667899999999999873 344444433322 367999997655 677777777776 57
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEccc
Q 001750 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (1018)
Q Consensus 360 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~lIvDEa 437 (1018)
++.+|.|...-..... ...+.+|+|-|+..+..- ...+..-..+++|+|||
T Consensus 124 ~csvfIGGT~~~~d~~---------------------------rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA 176 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLI---------------------------RLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA 176 (980)
T ss_pred ceEEEecCchhhhhhh---------------------------hhhhceEEecCchHHHHHHHhcCCCccceeEEEeccH
Confidence 8888888755432111 123567999999988653 34555556789999999
Q ss_pred ccccCccc---HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhh
Q 001750 438 HRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1018)
Q Consensus 438 HrlKn~~s---~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1018)
..|-...| .+...+..+. .+..+..|||=- .|+.+ .|.+.++
T Consensus 177 DkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp-~nLdn---------------------------------~Lsk~mr 222 (980)
T KOG4284|consen 177 DKLMDTESFQDDINIIINSLPQIRQVAAFSATYP-RNLDN---------------------------------LLSKFMR 222 (980)
T ss_pred HhhhchhhHHHHHHHHHHhcchhheeeEEeccCc-hhHHH---------------------------------HHHHHhc
Confidence 99865444 4445555554 556788999931 11111 1222222
Q ss_pred hHHHHHHHh-hHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCC
Q 001750 514 PHLLRRVKK-DVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1018)
Q Consensus 514 p~~lRR~k~-dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~ 592 (1018)
.-+|-|.-+ |+ .|-....+++.+ |..
T Consensus 223 dp~lVr~n~~d~--~L~GikQyv~~~-----------------------------------------~s~---------- 249 (980)
T KOG4284|consen 223 DPALVRFNADDV--QLFGIKQYVVAK-----------------------------------------CSP---------- 249 (980)
T ss_pred ccceeecccCCc--eeechhheeeec-----------------------------------------cCC----------
Confidence 112212211 11 010000111100 000
Q ss_pred ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhcc
Q 001750 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1018)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~ 672 (1018)
+.+.+. .--|++.|..++..+.= ...||||....-.+-|+++|...|+.+..|.|.|++.+|..+++.+.+
T Consensus 250 ----nnsvee---mrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~ 320 (980)
T KOG4284|consen 250 ----NNSVEE---MRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA 320 (980)
T ss_pred ----cchHHH---HHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh
Confidence 000000 11245555555554432 257999999999999999999999999999999999999999999965
Q ss_pred CCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCC
Q 001750 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1018)
Q Consensus 673 ~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k 725 (1018)
-...+|+||...+.||+-..++.||.+|++-+-..|.+|||||+|.|..-
T Consensus 321 ---f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 321 ---FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred ---ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 34568999999999999999999999999999999999999999999754
No 87
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.63 E-value=1.7e-14 Score=177.07 Aligned_cols=310 Identities=21% Similarity=0.225 Sum_probs=191.8
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHc-CCCeEE
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNVV 362 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~-p~~~vv 362 (1018)
+|++.|.++|.-.. ..+.|+|++..||.|||+.|...|..-..++.++++.|||+ ++..+=.++|.+|. -+++|.
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 79999999985432 33899999999999999999887777666666799999995 67778888888443 378999
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcccccc
Q 001750 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGHRL 440 (1018)
Q Consensus 363 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~--~l~~i~w~~lIvDEaHrl 440 (1018)
+++|+.+... ....+++|+|||||.+-.-.. ..-....++|||||+|-+
T Consensus 108 ~~TgD~~~~~-----------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 108 ISTGDYDLDD-----------------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred EecCCcccch-----------------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 9999876432 123578999999999853211 112224589999999999
Q ss_pred cCc-ccH----HHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhh
Q 001750 441 KNK-DSK----LFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1018)
Q Consensus 441 Kn~-~s~----~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1018)
... ... +...+..... -+.++||||- .|..|+.. ||+...+.+. .+|
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~---wL~a~~~~~~----------------------~rp 211 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVAD---WLNAKLVESD----------------------WRP 211 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHH---HhCCcccccC----------------------CCC
Confidence 665 111 1122222222 4678999994 34444443 2222221100 000
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCcc
Q 001750 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1018)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~ 594 (1018)
.-++| ..|.. ....... + ...
T Consensus 212 ~~l~~-------~v~~~-~~~~~~~-----------------------~--------------------------~~k-- 232 (766)
T COG1204 212 VPLRR-------GVPYV-GAFLGAD-----------------------G--------------------------KKK-- 232 (766)
T ss_pred ccccc-------CCccc-eEEEEec-----------------------C--------------------------ccc--
Confidence 00000 00000 0000000 0 000
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhh----C-----------------------
Q 001750 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----K----------------------- 647 (1018)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~----~----------------------- 647 (1018)
.....+...+..++....+.|..||||++...........|.. .
T Consensus 233 ---------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 303 (766)
T COG1204 233 ---------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPT 303 (766)
T ss_pred ---------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccc
Confidence 0011122233344445556788899998886654433333320 0
Q ss_pred ----------CCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEE-----c-----CCCC
Q 001750 648 ----------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIY-----D-----SDWN 707 (1018)
Q Consensus 648 ----------g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~-----D-----~dwN 707 (1018)
-..+..-+.+++.++|+-+-+.|+. +.+.+|+||..++.|+||++ ++|||- | -+-+
T Consensus 304 ~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~---g~ikVlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~ 379 (766)
T COG1204 304 SEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK---GKIKVLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIP 379 (766)
T ss_pred cchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc---CCceEEEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECc
Confidence 0123345677888899999999965 45568999999999999996 677664 4 2346
Q ss_pred cchHHHHHHHHHhhCCCC
Q 001750 708 PHADLQAMARAHRLGQTN 725 (1018)
Q Consensus 708 p~~~~Qa~gR~hRiGQ~k 725 (1018)
+...+|.+|||+|.|=..
T Consensus 380 ~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 380 VLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred hhhHhhccCcCCCCCcCC
Confidence 778999999999998543
No 88
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.3e-14 Score=160.83 Aligned_cols=319 Identities=18% Similarity=0.304 Sum_probs=212.1
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHH-HHHHHhcC-----CCCce-EEEeCC-ccHHHHHHHHHHHc
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE-----RISPH-LVVAPL-STLRNWEREFATWA 356 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~-~l~~l~~~-----~~~p~-LIV~P~-s~l~~W~~E~~~~~ 356 (1018)
+..|.|-.+|--. -.+..+|=..-+|+|||...+. .+.++..+ +.+|+ ||+||+ ++..|-..|.++|.
T Consensus 245 kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 3455555555322 3566777667799999965433 23343332 34577 677885 66688899999885
Q ss_pred --CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEE
Q 001750 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1018)
Q Consensus 357 --p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~l 432 (1018)
-+++++..+|....-..+... .....+||+|++.+.... ....-.+-.+|
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~L--------------------------k~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKEL--------------------------KEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhh--------------------------hcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 468888877766554444332 145679999999885321 12222345789
Q ss_pred EEcccccccCc--ccHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHH
Q 001750 433 IVDEGHRLKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1018)
Q Consensus 433 IvDEaHrlKn~--~s~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1018)
|+|||.|+-.. ..+.......++.+ ..|+.|+|- . ..+.+|
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~l- 418 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKL- 418 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHH-
Confidence 99999998543 34444555555544 468888883 0 111111
Q ss_pred HHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCC
Q 001750 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1018)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~ 589 (1018)
..+++.+ | ..+|..++...-.. +.+.--+|.
T Consensus 419 -----------ard~L~d--p--VrvVqg~vgean~d--------------------------ITQ~V~V~~-------- 449 (731)
T KOG0339|consen 419 -----------ARDILSD--P--VRVVQGEVGEANED--------------------------ITQTVSVCP-------- 449 (731)
T ss_pred -----------HHHHhcC--C--eeEEEeehhccccc--------------------------hhheeeecc--------
Confidence 1122211 1 12222221100000 000000110
Q ss_pred CCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHH
Q 001750 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
....|+..|.+-|......| +||||..-....+-|...|..+|+++..++|++.+.+|.+.|..
T Consensus 450 ---------------s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 450 ---------------SEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred ---------------CcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 12346666666666655555 89999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHH
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvE 739 (1018)
|...... +|+.|....+|+++...-|||+||.--.-..+.|++||.+|-|.+ -..|-|||..-.+
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9876554 799999999999999999999999988888999999999999976 5678999875443
No 89
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=1.8e-15 Score=156.19 Aligned_cols=164 Identities=26% Similarity=0.419 Sum_probs=110.8
Q ss_pred CChhHHHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCe
Q 001750 285 SLHPYQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN 360 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~ 360 (1018)
+|||||.++++-+...+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 68999999998887776654 89999999999999999998888877 99999996 777999999988886655
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc-------------ccCC
Q 001750 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------------LKPI 427 (1018)
Q Consensus 361 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~-------------l~~i 427 (1018)
............ ...... ................++++++++.+...... +..-
T Consensus 79 ~~~~~~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 79 NFFEKSIKPAYD----SKEFIS---------IQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp EEEE--GGGCCE-----SEEET---------TTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hhcccccccccc----cccccc---------cccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 443321110000 000000 00000000111234668999999999765322 2223
Q ss_pred cceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCC
Q 001750 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPl 467 (1018)
.+++||+||||++.+... ++.+..+...++|+|||||-
T Consensus 146 ~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp SESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred cCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 678999999999866543 66666678889999999994
No 90
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.6e-14 Score=160.50 Aligned_cols=323 Identities=16% Similarity=0.262 Sum_probs=210.0
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHH-HHHHHHHHhcCC----CCceEEEeCCccH----HHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGER----ISPHLVVAPLSTL----RNWEREFATW 355 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiq-ai~~l~~l~~~~----~~p~LIV~P~s~l----~~W~~E~~~~ 355 (1018)
.+.|.|...+--. .-|+..+-+..+|+|||.. ++.+|..|+-.. ..++||+||+--| .+-.+.+.+|
T Consensus 203 ~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3556776665321 3467788889999999976 455666665432 2389999997554 4556667777
Q ss_pred cCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc---cccccCCcceEE
Q 001750 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCM 432 (1018)
Q Consensus 356 ~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d---~~~l~~i~w~~l 432 (1018)
+ ++.+....|.-+.+..-.. -...+||||.|+..+... ...|.--...++
T Consensus 279 t-~I~~~L~vGGL~lk~QE~~--------------------------LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQEAV--------------------------LRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred c-cceeeeeecCccHHHHHHH--------------------------HhhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 7 7899999998776653211 123678999999998654 333444456789
Q ss_pred EEcccccccCc--ccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHH
Q 001750 433 IVDEGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1018)
Q Consensus 433 IvDEaHrlKn~--~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1018)
|+|||.|+... ...+...+.... .+..+|.|||- . +.+..|.
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-t----------------------------------eeVkdL~ 376 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-T----------------------------------EEVKDLA 376 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-H----------------------------------HHHHHHH
Confidence 99999998543 223333333322 33458888884 1 1111111
Q ss_pred HHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCC
Q 001750 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1018)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~ 589 (1018)
.+ +|.. ..-|+|..+..- ...|..-..++| +.-
T Consensus 377 sl---------------SL~k--Pvrifvd~~~~~---------------------a~~LtQEFiRIR---------~~r 409 (691)
T KOG0338|consen 377 SL---------------SLNK--PVRIFVDPNKDT---------------------APKLTQEFIRIR---------PKR 409 (691)
T ss_pred Hh---------------hcCC--CeEEEeCCcccc---------------------chhhhHHHheec---------ccc
Confidence 11 1110 111222211000 000000000000 000
Q ss_pred CCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHH
Q 001750 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
..-+-.+|..++.++. ..+++||.+.......|.-.|-..|+++.-++|+.++.+|-..+..
T Consensus 410 ----------------e~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~k 471 (691)
T KOG0338|consen 410 ----------------EGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEK 471 (691)
T ss_pred ----------------ccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHH
Confidence 1112334555555554 5699999999999999988899999999999999999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHH
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~ 745 (1018)
|....- -+||+|..++.||++...-+||.|+.|-.-..|++|.||.-|.|..- .-.-|+..+ |.+|+.-
T Consensus 472 Fk~~ei---dvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG--rsVtlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 472 FKKEEI---DVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG--RSVTLVGES--DRKLLKE 540 (691)
T ss_pred HHhccC---CEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc--ceEEEeccc--cHHHHHH
Confidence 976443 48999999999999999999999999999999999999999988642 233477766 5555543
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=5.2e-14 Score=167.29 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=74.5
Q ss_pred HHHHHHHHhhC--CCcEEEEeCCCChHHH--HHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCC---Cc-
Q 001750 637 LDLLEDYLTFK--KWQYERIDGKVGGAER--QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---NP- 708 (1018)
Q Consensus 637 ldiL~~~L~~~--g~~~~rldG~~~~~~R--q~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dw---Np- 708 (1018)
.+.+++.|... +.++.++|+.++...+ +++++.|.++.. .+|++|+..+.|+|++.++.|+++|.|- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~---~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKA---DILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCC---CEEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 56677777654 7899999999887665 889999976444 4899999999999999999999887763 33
Q ss_pred --------chHHHHHHHHHhhCCCCcEEEEE
Q 001750 709 --------HADLQAMARAHRLGQTNKVMIFR 731 (1018)
Q Consensus 709 --------~~~~Qa~gR~hRiGQ~k~V~Iyr 731 (1018)
+.+.|+.||++|-+....|.|..
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 57899999999988777776543
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=7.1e-14 Score=169.91 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+.++.+-+..+.+.|..|||||..+...+.|..+|...|+++..|+|.....+|+.+.+.|..+ .++|+|.
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-----~VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-----AVTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-----cEEEecc
Confidence 46789999999999999999999999999999999999999999999999999999999999999764 2799999
Q ss_pred cccccccCCCC--------------------------------------CEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001750 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1018)
Q Consensus 686 agg~GINL~~a--------------------------------------d~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V 727 (1018)
.+|.|+++.=. =+||.-.-.-|-..|.|..||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 99999988621 2788888899999999999999999987655
Q ss_pred EEE
Q 001750 728 MIF 730 (1018)
Q Consensus 728 ~Iy 730 (1018)
..|
T Consensus 581 ~f~ 583 (896)
T PRK13104 581 RFY 583 (896)
T ss_pred EEE
Confidence 444
No 93
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=1.4e-14 Score=156.91 Aligned_cols=316 Identities=18% Similarity=0.297 Sum_probs=208.1
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHH--HHHHH-----hcCCCC-ceEEEeCCccH-HHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA--FLASL-----FGERIS-PHLVVAPLSTL-RNWEREFATW 355 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~--~l~~l-----~~~~~~-p~LIV~P~s~l-~~W~~E~~~~ 355 (1018)
+..|.|-.+ |= ..-+|..+|-...+|.|||+.-+. ++... +....+ ..||++|..-| .|-+-|..++
T Consensus 242 KPtPIqSQa--WP--I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA--WP--ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc--cc--eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 466677665 42 236889999999999999976432 11111 122334 56888996544 5666676654
Q ss_pred c-CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEE
Q 001750 356 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (1018)
Q Consensus 356 ~-p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d--~~~l~~i~w~~l 432 (1018)
. -.+..++++|...--..+.+. ..+.+++|.|+..+..- ..++..-...+|
T Consensus 318 syng~ksvc~ygggnR~eqie~l--------------------------krgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL--------------------------KRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH--------------------------hcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 3 345555555554433333332 23678999999888642 233333455789
Q ss_pred EEcccccccC--cccHHHHHHHhcccccEEEE-ecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHH
Q 001750 433 IVDEGHRLKN--KDSKLFSSLKQYSTRHRVLL-TGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1018)
Q Consensus 433 IvDEaHrlKn--~~s~~~~~l~~l~~~~rllL-TgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1018)
|+|||.++.. ...++.+.|..++..+-..| |||-
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW------------------------------------------- 408 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW------------------------------------------- 408 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccC-------------------------------------------
Confidence 9999999864 56788899999987765544 5662
Q ss_pred HHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCC
Q 001750 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1018)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~ 589 (1018)
|.-+||+....+++ |...++-.+.|... ...++. +++
T Consensus 409 ----P~~VrrLa~sY~Ke--p~~v~vGsLdL~a~------------------------------~sVkQ~----i~v--- 445 (629)
T KOG0336|consen 409 ----PEGVRRLAQSYLKE--PMIVYVGSLDLVAV------------------------------KSVKQN----IIV--- 445 (629)
T ss_pred ----chHHHHHHHHhhhC--ceEEEecccceeee------------------------------eeeeee----EEe---
Confidence 11122222222211 11111111111000 000000 000
Q ss_pred CCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHH
Q 001750 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
-..+.|+..+..++..+ ....|||||+....+.|-|..-|...|+....|+|.-.+.+|+.+++.
T Consensus 446 --------------~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~ 510 (629)
T KOG0336|consen 446 --------------TTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALED 510 (629)
T ss_pred --------------cccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHh
Confidence 01345665555555443 457899999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
| .++.+.+|++|..++.||+++...+|+.||.+-|-..|++++||.+|.|.+-.- .-|++.+
T Consensus 511 ~---ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s--is~lt~~ 572 (629)
T KOG0336|consen 511 F---KSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS--ISFLTRN 572 (629)
T ss_pred h---hcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce--EEEEehh
Confidence 9 456777999999999999999999999999999999999999999999966432 3455554
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.60 E-value=7.7e-13 Score=141.41 Aligned_cols=315 Identities=19% Similarity=0.203 Sum_probs=211.4
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC-CccHHHHHHHHHHHcCCCe
Q 001750 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMN 360 (1018)
Q Consensus 282 ~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~~W~~E~~~~~p~~~ 360 (1018)
.+|+|.++|..+-+-|...+.+....|+-.-+|.|||-+....+...++.+ +.+.|+.| ..++-.-...++.-+++..
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~~ 172 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNCD 172 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccCC
Confidence 468999999999999999999999999999999999998888888777664 58999999 4677777777888788888
Q ss_pred EEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccc
Q 001750 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (1018)
Q Consensus 361 vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrl 440 (1018)
+...+|+.++.. -..=||-||++.++- .-.||++||||+..+
T Consensus 173 I~~Lyg~S~~~f--------------------------------r~plvVaTtHQLlrF------k~aFD~liIDEVDAF 214 (441)
T COG4098 173 IDLLYGDSDSYF--------------------------------RAPLVVATTHQLLRF------KQAFDLLIIDEVDAF 214 (441)
T ss_pred eeeEecCCchhc--------------------------------cccEEEEehHHHHHH------HhhccEEEEeccccc
Confidence 999998876421 011266677777652 224789999999987
Q ss_pred c-CcccHHHHHHHhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhH-H
Q 001750 441 K-NKDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH-L 516 (1018)
Q Consensus 441 K-n~~s~~~~~l~~l~--~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~-~ 516 (1018)
- ..+-.+..+++... ...++.|||||- .+|- .. -++.-+.+. +
T Consensus 215 P~~~d~~L~~Av~~ark~~g~~IylTATp~----k~l~------------------r~-----------~~~g~~~~~kl 261 (441)
T COG4098 215 PFSDDQSLQYAVKKARKKEGATIYLTATPT----KKLE------------------RK-----------ILKGNLRILKL 261 (441)
T ss_pred cccCCHHHHHHHHHhhcccCceEEEecCCh----HHHH------------------HH-----------hhhCCeeEeec
Confidence 4 23334555555543 346899999992 0000 00 000000000 0
Q ss_pred HHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCcccc
Q 001750 517 LRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (1018)
Q Consensus 517 lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~ 596 (1018)
-+|.- .+.||-..... +. .. .
T Consensus 262 p~RfH---~~pLpvPkf~w--~~--~~--------------------------~-------------------------- 282 (441)
T COG4098 262 PARFH---GKPLPVPKFVW--IG--NW--------------------------N-------------------------- 282 (441)
T ss_pred chhhc---CCCCCCCceEE--ec--cH--------------------------H--------------------------
Confidence 01110 01122111111 10 00 0
Q ss_pred HHHHHHHHhhhhHHH-HHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCC-CChHHHHHHHHHhccCC
Q 001750 597 NESFKQLLESSGKLQ-LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKN 674 (1018)
Q Consensus 597 ~~~~~~li~~S~Kl~-~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~-~~~~~Rq~~i~~Fn~~~ 674 (1018)
+.+ .-+|+. .|...|++-...|..||||...+.+++-+...|+. ++++..+..- .....|.+.+..|.+
T Consensus 283 ----k~l--~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs~d~~R~EkV~~fR~-- 353 (441)
T COG4098 283 ----KKL--QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHSEDQHRKEKVEAFRD-- 353 (441)
T ss_pred ----HHh--hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeeccCccHHHHHHHHHc--
Confidence 000 112222 45677778888899999999999999999998852 4455543332 224678999999975
Q ss_pred CCceEEEeecccccccccCCCCCEEEEEcCC--CCcchHHHHHHHHHhhCCCCcEEEEEEeeCCC
Q 001750 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSD--WNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1018)
Q Consensus 675 s~~~v~Llstragg~GINL~~ad~VIi~D~d--wNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~T 737 (1018)
+.+-+|++|..+..|++++..|++++=.-. ++-+..+|.-||++|--....-.|+.|-.--|
T Consensus 354 -G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 354 -GKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred -CceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 445699999999999999999999886554 88999999999999976655555555554433
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.59 E-value=1.3e-13 Score=177.01 Aligned_cols=279 Identities=14% Similarity=0.177 Sum_probs=171.4
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCC--e
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM--N 360 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~--~ 360 (1018)
..+.++|..++..+ ..|.+.++..++|+|||..++.++..+... ...+|||+|+ .+..|+.+.|..++..+ .
T Consensus 77 ~~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 77 SEPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLAKK-GKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 35788999988655 578899999999999998666555544333 3489999996 55588999999887532 2
Q ss_pred ---EEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEccc
Q 001750 361 ---VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1018)
Q Consensus 361 ---vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEa 437 (1018)
+..|+|...........+- .....++|+|+|+..+......+.. .++++|||||
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~----------------------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMER----------------------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 2346675433221111000 0113589999999999876555554 7899999999
Q ss_pred ccccCcccH--------------HHHHH----------------------Hhccccc---EEEEecCCCCCCHHHHHHHH
Q 001750 438 HRLKNKDSK--------------LFSSL----------------------KQYSTRH---RVLLTGTPLQNNLDELFMLM 478 (1018)
Q Consensus 438 HrlKn~~s~--------------~~~~l----------------------~~l~~~~---rllLTgTPlqN~~~EL~~Ll 478 (1018)
|++-..... +..++ ..+.... .++.|||+.+......+
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--- 285 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--- 285 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH---
Confidence 998542110 11111 0111111 13347774322111000
Q ss_pred HhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHH
Q 001750 479 HFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQI 558 (1018)
Q Consensus 479 ~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~ 558 (1018)
+| .+- .+.+.
T Consensus 286 --------------------------------------~r--------~ll-----~~~v~------------------- 295 (1171)
T TIGR01054 286 --------------------------------------FR--------ELL-----GFEVG------------------- 295 (1171)
T ss_pred --------------------------------------cc--------ccc-----ceEec-------------------
Confidence 00 000 00000
Q ss_pred HHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechh---h
Q 001750 559 LTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---H 635 (1018)
Q Consensus 559 l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~---~ 635 (1018)
.... .++. ..|.|.. ...+...|.++|..+ |..+|||++.. .
T Consensus 296 -----~~~~-------~~r~-I~~~~~~-------------------~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~ 340 (1171)
T TIGR01054 296 -----GGSD-------TLRN-VVDVYVE-------------------DEDLKETLLEIVKKL---GTGGIVYVSIDYGKE 340 (1171)
T ss_pred -----Cccc-------cccc-eEEEEEe-------------------cccHHHHHHHHHHHc---CCCEEEEEeccccHH
Confidence 0000 0011 0111110 001122344455443 56899999988 8
Q ss_pred HHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEee----cccccccccCCC-CCEEEEEcCC
Q 001750 636 MLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD 705 (1018)
Q Consensus 636 ~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Lls----tragg~GINL~~-ad~VIi~D~d 705 (1018)
..+.|..+|...|+++..++|.++ +.+++.|.++... +||+ |..+++|||++. .++||+||.|
T Consensus 341 ~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 341 KAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCC
Confidence 999999999999999999999986 4789999765443 7887 588999999998 7999999987
No 96
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.59 E-value=1.1e-13 Score=171.69 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=92.4
Q ss_pred hCCeEEEEechhhHHHHHHHHHhh---CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEE
Q 001750 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1018)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~V 699 (1018)
.+..+|||.+.....+.+...|.. .++.+..++|+++.++|+++++.|.. +...+||||..++.||+++.+++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~---G~rkVlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ---GRRKVVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc---CCeEEEEecchHhhcccccCceEE
Confidence 356899999999999999888876 47899999999999999999999954 344589999999999999999999
Q ss_pred EEEcCC----CCcch--------------HHHHHHHHHhhCCCCcEEEEEEeeCCC
Q 001750 700 IIYDSD----WNPHA--------------DLQAMARAHRLGQTNKVMIFRLITRGS 737 (1018)
Q Consensus 700 Ii~D~d----wNp~~--------------~~Qa~gR~hRiGQ~k~V~Iyrlvt~~T 737 (1018)
|.++.. +||.. ..||.||++|. ++-.+|+|+++..
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 999864 56655 67888888886 5778899998753
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.9e-13 Score=165.53 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..|.+.+....+.|..|||||..+...+.|...|...|+++..++|.....+++.+...+ .++ .++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag---~~g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAG---QRG--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcC---CCc--eEEEEec
Confidence 35688899999988888999999999999999999999999999999999998765555555444 333 3799999
Q ss_pred cccccccCC---CCC-----EEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 686 agg~GINL~---~ad-----~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
.+|.|+++. .+. +||.++.+-|...+.|+.||++|.|..-...
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999995 566 9999999999999999999999999876553
No 98
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=6.8e-15 Score=154.98 Aligned_cols=308 Identities=20% Similarity=0.273 Sum_probs=202.4
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCCCC-ceEEEeCCccH----HHHHHHHHHHcCCC
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLSTL----RNWEREFATWAPQM 359 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~~~-p~LIV~P~s~l----~~W~~E~~~~~p~~ 359 (1018)
..|.|.+++--. -.|++.+.-.--|+|||-.- |..+..+-..... ..+|+||..-+ +|-..++.++. ++
T Consensus 108 PSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i 182 (459)
T KOG0326|consen 108 PSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GI 182 (459)
T ss_pred CCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-Ce
Confidence 344555554311 24455555566799999663 3333333222222 67999996433 67788888887 58
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEccc
Q 001750 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1018)
Q Consensus 360 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~lIvDEa 437 (1018)
.|.+-+|....|..|-. -....|++|.|+..+..-. ..-.--.-..+|+|||
T Consensus 183 ~vmvttGGT~lrDDI~R--------------------------l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMR--------------------------LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEEecCCcccccceee--------------------------ecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 88888887766654321 1235689999998875321 1112224568999999
Q ss_pred ccccCccc--HHHHHHHhcc-cccEEEEecC-CCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhh
Q 001750 438 HRLKNKDS--KLFSSLKQYS-TRHRVLLTGT-PLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1018)
Q Consensus 438 HrlKn~~s--~~~~~l~~l~-~~~rllLTgT-PlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1018)
..+.+..- .+-+.+.-+. .+..+|.||| |+ ....|...
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~--------------------tVk~Fm~~------------------ 278 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPL--------------------TVKGFMDR------------------ 278 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccch--------------------hHHHHHHH------------------
Confidence 99866432 2333333343 4566778888 21 11222222
Q ss_pred hHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCc
Q 001750 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 514 p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~ 593 (1018)
.+++-. ++.+.-+|+..-.
T Consensus 279 -----~l~kPy--------~INLM~eLtl~Gv------------------------------------------------ 297 (459)
T KOG0326|consen 279 -----HLKKPY--------EINLMEELTLKGV------------------------------------------------ 297 (459)
T ss_pred -----hccCcc--------eeehhhhhhhcch------------------------------------------------
Confidence 111110 1111111111100
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccC
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~ 673 (1018)
..+...++.+-|+.-|.-++.+|.- ...||||+.+...++|+..+...||+...++..|.++.|..+...|.++
T Consensus 298 ----tQyYafV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G 371 (459)
T KOG0326|consen 298 ----TQYYAFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG 371 (459)
T ss_pred ----hhheeeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc
Confidence 0112234456677777778777643 4789999999999999999999999999999999999999999999764
Q ss_pred CCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEee
Q 001750 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1018)
Q Consensus 674 ~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt 734 (1018)
.- ..|++|...-.||++++.++||.||.+-|+..|+.++||.+|.|--- .-..||+
T Consensus 372 ~c---rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLit 427 (459)
T KOG0326|consen 372 KC---RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLIT 427 (459)
T ss_pred cc---ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEe
Confidence 33 47999999999999999999999999999999999999999999542 2334553
No 99
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=9.6e-14 Score=149.48 Aligned_cols=336 Identities=18% Similarity=0.285 Sum_probs=203.0
Q ss_pred CCccccccccCCCCCCCC------CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhc-CCCC-ceEE
Q 001750 267 KPKEFQQYEHSPEFLSGG------SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERIS-PHLV 338 (1018)
Q Consensus 267 ~~~~~~~~~~~P~~~~~~------~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~-~~~~-p~LI 338 (1018)
..+.|..+.-.|+.+.|. .....|..++-.| .....++.|--...|+|||..-...+..-.. .... -.+.
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPll--l~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iC 165 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLL--LAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCIC 165 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchh--hcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCcee
Confidence 346677777778777652 3555677777654 2356678888889999999653222222111 1112 3455
Q ss_pred EeCCcc-HHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHH
Q 001750 339 VAPLST-LRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMI 417 (1018)
Q Consensus 339 V~P~s~-l~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l 417 (1018)
++|.-- ..|-..-+.+...-..+..-++-++++ ..+.....-+|+|-|+.++
T Consensus 166 LaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk---------------------------~~rG~~i~eqIviGTPGtv 218 (477)
T KOG0332|consen 166 LAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK---------------------------AKRGNKLTEQIVIGTPGTV 218 (477)
T ss_pred eCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc---------------------------cccCCcchhheeeCCCccH
Confidence 589644 455444444433111111111111110 0011234568999999998
Q ss_pred hhccccccCC---cceEEEEcccccccCccc---HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChH
Q 001750 418 NLDSASLKPI---KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE 490 (1018)
Q Consensus 418 ~~d~~~l~~i---~w~~lIvDEaHrlKn~~s---~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~ 490 (1018)
..-...|+.+ ...++|+|||...-+... ...+....+. ....+|.|||-. ....
T Consensus 219 ~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~-------------------e~V~ 279 (477)
T KOG0332|consen 219 LDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV-------------------EKVA 279 (477)
T ss_pred HHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH-------------------HHHH
Confidence 7654444333 567899999988765441 2223333333 456778888730 0001
Q ss_pred HHHHHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHH
Q 001750 491 EFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLI 570 (1018)
Q Consensus 491 ~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~ 570 (1018)
.| +.+-+|.....++.-+- .. +
T Consensus 280 ~F-------------------------------a~kivpn~n~i~Lk~ee--------------------------l~-L 301 (477)
T KOG0332|consen 280 AF-------------------------------ALKIVPNANVIILKREE--------------------------LA-L 301 (477)
T ss_pred HH-------------------------------HHHhcCCCceeeeehhh--------------------------cc-c
Confidence 11 11112222222211000 00 0
Q ss_pred HHHHHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCc
Q 001750 571 NVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ 650 (1018)
Q Consensus 571 ~~l~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~ 650 (1018)
.-+.+|--.|.+ ...|+.+|..+. .+..-| ..||||+-..+...|...|...|+.
T Consensus 302 ~~IkQlyv~C~~-----------------------~~~K~~~l~~ly-g~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~ 356 (477)
T KOG0332|consen 302 DNIKQLYVLCAC-----------------------RDDKYQALVNLY-GLLTIG-QSIIFCHTKATAMWLYEEMRAEGHQ 356 (477)
T ss_pred cchhhheeeccc-----------------------hhhHHHHHHHHH-hhhhhh-heEEEEeehhhHHHHHHHHHhcCce
Confidence 001112112222 234777777733 333333 6899999999999999999999999
Q ss_pred EEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCC------CcchHHHHHHHHHhhCCC
Q 001750 651 YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRLGQT 724 (1018)
Q Consensus 651 ~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dw------Np~~~~Qa~gR~hRiGQ~ 724 (1018)
+..++|.++..+|..+|++|..+.+ .+|++|.+.++||+.+..+.||.||.+- .|..|++|+||++|.|.+
T Consensus 357 V~~l~G~l~~~~R~~ii~~Fr~g~~---kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk 433 (477)
T KOG0332|consen 357 VSLLHGDLTVEQRAAIIDRFREGKE---KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK 433 (477)
T ss_pred eEEeeccchhHHHHHHHHHHhcCcc---eEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc
Confidence 9999999999999999999987554 4899999999999999999999999863 578899999999999954
Q ss_pred CcEEEEEEee-CCCH
Q 001750 725 NKVMIFRLIT-RGSI 738 (1018)
Q Consensus 725 k~V~Iyrlvt-~~Tv 738 (1018)
- +. +.|+- +++.
T Consensus 434 G-~a-~n~v~~~~s~ 446 (477)
T KOG0332|consen 434 G-LA-INLVDDKDSM 446 (477)
T ss_pred c-eE-EEeecccCcH
Confidence 3 33 33553 3443
No 100
>PRK14701 reverse gyrase; Provisional
Probab=99.56 E-value=2.2e-13 Score=178.18 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhCCeEEEEechhhH---HHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc----
Q 001750 613 LDKMMVKLKEQGHRVLIYSQFQHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR---- 685 (1018)
Q Consensus 613 L~klL~~l~~~g~kvLIFsq~~~~---ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr---- 685 (1018)
|..++..+ |..+|||++.... ++.|..+|...|+++..++|. |..++++|.++... +|++|.
T Consensus 322 L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s~~g 390 (1638)
T PRK14701 322 VRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVATYYG 390 (1638)
T ss_pred HHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecCCCC
Confidence 44555443 6789999987654 589999999999999999984 88999999775544 789994
Q ss_pred cccccccCCC-CCEEEEEcCCC---CcchHH-------------HHHHHHHhhCCC
Q 001750 686 AGGLGINLAT-ADTVIIYDSDW---NPHADL-------------QAMARAHRLGQT 724 (1018)
Q Consensus 686 agg~GINL~~-ad~VIi~D~dw---Np~~~~-------------Qa~gR~hRiGQ~ 724 (1018)
.++.|||++. ..+||+||.|- |...+. |..||++|-|..
T Consensus 391 vaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 391 TLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred eeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 7889999997 99999999986 544444 445899888853
No 101
>PRK09694 helicase Cas3; Provisional
Probab=99.56 E-value=3.2e-13 Score=167.63 Aligned_cols=351 Identities=17% Similarity=0.146 Sum_probs=190.6
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeCCc-cHHHHHHHHHH----Hc
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLS-TLRNWEREFAT----WA 356 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s-~l~~W~~E~~~----~~ 356 (1018)
+..++|+|....+-. ..++..||-..||.|||-.|+.++..+...+ ...++++.|.- +..+-...+.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 568999999774321 3566789999999999999999888776543 45889999964 44555555543 34
Q ss_pred CCCeEEEEecChHHHHHHHHh---hhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc-----ccccC--
Q 001750 357 PQMNVVMYVGTSQARNIIREY---EFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-----ASLKP-- 426 (1018)
Q Consensus 357 p~~~vv~y~g~~~~r~~i~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~-----~~l~~-- 426 (1018)
++.++...||........... .......... ... .............-.+|+|+|.+.+..-. .+++.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEA-WVQ-CCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchh-hhH-HHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 566788888875422111100 0000000000 000 00000000111233589999998876321 11111
Q ss_pred CcceEEEEcccccccCcccHH-HHHHHhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHH
Q 001750 427 IKWQCMIVDEGHRLKNKDSKL-FSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1018)
Q Consensus 427 i~w~~lIvDEaHrlKn~~s~~-~~~l~~l~--~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~ 503 (1018)
+.=.+|||||+|-+-...+.+ ...|..+. ....++||||+-..-..+|...+ .... . ..
T Consensus 438 La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~---~~~~---~---------~~--- 499 (878)
T PRK09694 438 LGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY---GGHD---P---------VE--- 499 (878)
T ss_pred hccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh---cccc---c---------cc---
Confidence 122489999999884433333 23333322 34689999997221111111110 0000 0 00
Q ss_pred HHHHHHHHhhhHHHHHHHhhHhhcCCCcEEE----EEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh
Q 001750 504 QISRLHRMLAPHLLRRVKKDVMKELPPKKEL----ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKL 579 (1018)
Q Consensus 504 ~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~----iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~ 579 (1018)
.....|-.... ...+. +
T Consensus 500 --------------------~~~~YPlvt~~~~~~~~~~~---------------------------------------~ 520 (878)
T PRK09694 500 --------------------LSSAYPLITWRGVNGAQRFD---------------------------------------L 520 (878)
T ss_pred --------------------cccccccccccccccceeee---------------------------------------c
Confidence 00000000000 00000 0
Q ss_pred hCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCC---CcEEEEeC
Q 001750 580 CCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDG 656 (1018)
Q Consensus 580 c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g---~~~~rldG 656 (1018)
..|+...... ....-.. ..+-.......++..++.. ...|.+||||++.+.....+.+.|...+ +++..++|
T Consensus 521 ~~~~~~~~~~-~~v~v~~---~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHs 595 (878)
T PRK09694 521 SAHPEQLPAR-FTIQLEP---ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHA 595 (878)
T ss_pred cccccccCcc-eEEEEEe---eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeC
Confidence 0000000000 0000000 0000001112233333333 3568899999999999999999998654 67999999
Q ss_pred CCChHHH----HHHHHHhccCCC-CceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCC
Q 001750 657 KVGGAER----QIRIDRFNAKNS-SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (1018)
Q Consensus 657 ~~~~~~R----q~~i~~Fn~~~s-~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~ 724 (1018)
.++..+| +++++.|...+. ....+||+|.+...|||+ .+|.+|....+ ...++||+||+||.|.+
T Consensus 596 rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 596 RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999988 467888943222 223589999999999999 57988886655 56899999999999874
No 102
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=5.1e-13 Score=162.52 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..|.+.+......|..|||||..+...+.|...|...|+++..|+|. ..+|.+.|..|... ...++|+|.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~---~g~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGR---PGAVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCC---CceEEEecc
Confidence 4568999999999988999999999999999999999999999999999996 67899999999543 335899999
Q ss_pred cccccccCCCC--------------------------------------CEEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001750 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1018)
Q Consensus 686 agg~GINL~~a--------------------------------------d~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V 727 (1018)
.+|.|+|+.-. =+||.-..+=|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 99999998743 3788888899999999999999999987665
Q ss_pred EEE
Q 001750 728 MIF 730 (1018)
Q Consensus 728 ~Iy 730 (1018)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 544
No 103
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.56 E-value=1e-12 Score=161.61 Aligned_cols=370 Identities=17% Similarity=0.235 Sum_probs=236.3
Q ss_pred CCChhHHHHHHHHHHHhhcCCC--ceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH-HHHHHHHHHHcCCCe
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMN 360 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~--~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~~W~~E~~~~~p~~~ 360 (1018)
.+-.|-|+.+++-+..=..+++ .-+||-++|.|||=.|+=.+-.....+ +-+.|+||+.+| .|-.+.|..-+-++.
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-KQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-KQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 4577899999998876666554 569999999999988754332222222 589999999888 444455554444555
Q ss_pred EEE--E---ecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEc
Q 001750 361 VVM--Y---VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1018)
Q Consensus 361 vv~--y---~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvD 435 (1018)
|-+ . .+.+..+.++... ...+.||||-|+..+.++..+- +-.+||||
T Consensus 672 V~I~~LSRF~s~kE~~~il~~l-------------------------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIID 723 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGL-------------------------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIID 723 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHH-------------------------hcCCccEEEechHhhCCCcEEe---cCCeEEEe
Confidence 543 2 2333333333321 2357899999999998776543 34699999
Q ss_pred ccccccCcccHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhh
Q 001750 436 EGHRLKNKDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1018)
Q Consensus 436 EaHrlKn~~s~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1018)
|=||+.- +.-..|++++++ +.|-|||||++-.+. +-..+ +
T Consensus 724 EEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~-------Msm~G--------------------i--------- 764 (1139)
T COG1197 724 EEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLN-------MSLSG--------------------I--------- 764 (1139)
T ss_pred chhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHH-------HHHhc--------------------c---------
Confidence 9999843 344667777654 889999999866531 00000 0
Q ss_pred HHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCcc
Q 001750 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1018)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~ 594 (1018)
+.-..-.-||.....|.--..+..-.
T Consensus 765 ------RdlSvI~TPP~~R~pV~T~V~~~d~~------------------------------------------------ 790 (1139)
T COG1197 765 ------RDLSVIATPPEDRLPVKTFVSEYDDL------------------------------------------------ 790 (1139)
T ss_pred ------hhhhhccCCCCCCcceEEEEecCChH------------------------------------------------
Confidence 00001134555444443222211111
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhC--CCcEEEEeCCCChHHHHHHHHHhcc
Q 001750 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1018)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~rldG~~~~~~Rq~~i~~Fn~ 672 (1018)
++.+.|.+-..+|.+|....+.+..+.-+...|+.. ..++...+|.|+..+-+.++..|.+
T Consensus 791 -----------------~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 791 -----------------LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred -----------------HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 112222222345667887788888888888888653 5578899999999999999999977
Q ss_pred CCCCceEEEeecccccccccCCCCCEEEEEcCC-CCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHH
Q 001750 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 751 (1018)
Q Consensus 673 ~~s~~~v~Llstragg~GINL~~ad~VIi~D~d-wNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~ 751 (1018)
+.. -+||||.....|||+++|||+||-+.| +--++.-|-.||++|-. +..+-|-|+-.+ ..+.+.+.+++.
T Consensus 854 g~~---dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~~---k~lT~~A~kRL~ 925 (1139)
T COG1197 854 GEY---DVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPPQ---KALTEDAEKRLE 925 (1139)
T ss_pred CCC---CEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecCc---cccCHHHHHHHH
Confidence 554 489999999999999999999999886 67788889999999953 456667666542 234455555554
Q ss_pred HHHHHh--ccccccCCCHHHHHHHHhhchhhhhcccccCCCCcccCCCC------HHHHHHHhc
Q 001750 752 LEHLVV--GRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYD------DAAIDRLLD 807 (1018)
Q Consensus 752 l~~~v~--~~~~~~~~~~~el~~il~~g~~~lf~~~~~~~~~~~~~~~~------~~~id~ll~ 807 (1018)
.....- |.. - +=-+.||=--|+-.|.+++- .|.-..+.|+ +++|..+..
T Consensus 926 aI~~~~~LGaG--f---~lA~~DLeIRGaGNlLG~eQ--SG~I~~VGf~LY~~mLeeAI~~lk~ 982 (1139)
T COG1197 926 AIASFTELGAG--F---KLAMHDLEIRGAGNLLGEEQ--SGHIESVGFDLYMEMLEEAIAALKG 982 (1139)
T ss_pred HHHhhhhcCch--H---HHHhcchhccccccccCccc--cCchheecHHHHHHHHHHHHHHHhc
Confidence 433322 211 0 11123333457777777653 2333333333 577777766
No 104
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.54 E-value=9.8e-14 Score=155.63 Aligned_cols=342 Identities=19% Similarity=0.278 Sum_probs=209.9
Q ss_pred CCceEEEcCCCccHHHH-HHHHHHHHhcC-------------CCCc-eEEEeCCc-cHHHHHHHHHHHc--CCCeEEEEe
Q 001750 304 QTHVILADEMGLGKTIQ-SIAFLASLFGE-------------RISP-HLVVAPLS-TLRNWEREFATWA--PQMNVVMYV 365 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiq-ai~~l~~l~~~-------------~~~p-~LIV~P~s-~l~~W~~E~~~~~--p~~~vv~y~ 365 (1018)
...+|=|.|+|+|||+. +|-++..+.+. ++.| .|||+|+- +..|-.+-|...+ +++++..+.
T Consensus 219 k~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~ 298 (731)
T KOG0347|consen 219 KVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASIT 298 (731)
T ss_pred chhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEee
Confidence 36788899999999987 46666644321 1222 69999974 4467777776655 578888899
Q ss_pred cChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh----ccccccCC-cceEEEEcccccc
Q 001750 366 GTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPI-KWQCMIVDEGHRL 440 (1018)
Q Consensus 366 g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~----d~~~l~~i-~w~~lIvDEaHrl 440 (1018)
|.-.....-|-. ....+|||.|+..+-. +...+..+ +..|||||||.|+
T Consensus 299 GGLavqKQqRlL--------------------------~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRm 352 (731)
T KOG0347|consen 299 GGLAVQKQQRLL--------------------------NQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRM 352 (731)
T ss_pred chhHHHHHHHHH--------------------------hcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHH
Confidence 987655432221 1257899999887632 22234443 4579999999998
Q ss_pred --cCcccHHHHHHHhcc------cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHh
Q 001750 441 --KNKDSKLFSSLKQYS------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1018)
Q Consensus 441 --Kn~~s~~~~~l~~l~------~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L 512 (1018)
+++=..+.+.|..+. .+..+..|||-- +..+... . ...-........-+.+..++
T Consensus 353 vekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt---------~~~~~~~------~--~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 353 VEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLT---------LVLQQPL------S--SSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhccHHHHHHHHHHhhhhhcccccceEEEEEEee---------hhhcChh------H--HhhhccchhhhhhHHHHHHH
Confidence 444444555555543 224578888841 0000000 0 00000000001111122222
Q ss_pred hhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCC
Q 001750 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1018)
Q Consensus 513 ~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~ 592 (1018)
+. +.-.-+| ..+++++.+.-. ..+.+-+--| .| + +.+
T Consensus 416 k~---------ig~~~kp-----kiiD~t~q~~ta-----------------------~~l~Es~I~C-~~-~----eKD 452 (731)
T KOG0347|consen 416 KK---------IGFRGKP-----KIIDLTPQSATA-----------------------STLTESLIEC-PP-L----EKD 452 (731)
T ss_pred HH---------hCccCCC-----eeEecCcchhHH-----------------------HHHHHHhhcC-Cc-c----ccc
Confidence 11 1111122 234444433221 1112222223 11 0 000
Q ss_pred ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhcc
Q 001750 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1018)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~ 672 (1018)
. .|.-+| ..--.|.||||+.++.+..|.-+|...+++..-|+.+|.+.+|-+.+++|.+
T Consensus 453 ~------------------ylyYfl---~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~ 511 (731)
T KOG0347|consen 453 L------------------YLYYFL---TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQ 511 (731)
T ss_pred e------------------eEEEEE---eecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhc
Confidence 0 000000 0112489999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeC-----------------
Q 001750 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR----------------- 735 (1018)
Q Consensus 673 ~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~----------------- 735 (1018)
..++ +||+|.+++.||+++.+++||+|.-+-....|++|-||.-|.+.. -|.|. |+..
T Consensus 512 ~~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvm-l~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 512 SPSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVM-LCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred CCCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEE-EeChHHhHHHHHHHHHHhhcc
Confidence 6554 899999999999999999999999999999999999999997643 22221 1111
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHh
Q 001750 736 ----GSIEERMMQMTKKKMVLEHLVV 757 (1018)
Q Consensus 736 ----~TvEe~i~~~~~~K~~l~~~v~ 757 (1018)
-.|++.|+...+.+..|++.+.
T Consensus 587 dlpifPv~~~~m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 587 DLPIFPVETDIMDALKERVRLAREID 612 (731)
T ss_pred CCCceeccHHHHHHHHHHHHHHHHHH
Confidence 1357777777777777776653
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=3.1e-13 Score=163.86 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..+.+-+..+.+.|..|||||..+...+.|..+|...|+++..+++.....+++.+.+.|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 467888898889999999999999999999999999999999999999999999999999999986532 799999
Q ss_pred cccccccCCCC-------------------------------------CEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 686 AGGLGINLATA-------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 686 agg~GINL~~a-------------------------------------d~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
.+|.|+++.-. =+||.-...-|-..|.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 99999998622 27899899999999999999999999865444
Q ss_pred E
Q 001750 729 I 729 (1018)
Q Consensus 729 I 729 (1018)
.
T Consensus 586 f 586 (908)
T PRK13107 586 F 586 (908)
T ss_pred E
Confidence 3
No 106
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.53 E-value=4.3e-13 Score=166.91 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=92.4
Q ss_pred hCCeEEEEechhhHHHHHHHHHhh---CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEE
Q 001750 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1018)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~V 699 (1018)
.+..+|||.......+.+.+.|.. .++.+..++|+++..+|++++..|.+ +...+|++|..+..||++..+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA---GRRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC---CCeEEEEecchHHhcccccCceEE
Confidence 467899999999999999999976 57889999999999999999988853 445689999999999999999999
Q ss_pred EEEcCC----CCcc--------------hHHHHHHHHHhhCCCCcEEEEEEeeCCCHH
Q 001750 700 IIYDSD----WNPH--------------ADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1018)
Q Consensus 700 Ii~D~d----wNp~--------------~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvE 739 (1018)
|.++.. |+|. ..+||.||++|. .+-.+|+|+++...+
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE 342 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh
Confidence 996653 3333 578888888886 488899999876443
No 107
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.52 E-value=3.8e-13 Score=151.60 Aligned_cols=314 Identities=20% Similarity=0.277 Sum_probs=208.0
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCCCCceEEEeCCccHHH-HHHHHHHHcCC--C
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTLRN-WEREFATWAPQ--M 359 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~s~l~~-W~~E~~~~~p~--~ 359 (1018)
.+|.|-|.-+|.. ..-.|.+.++...+++|||+++ +|-+..++.. .+++|.+||+-.+.| =.++|..-+.. +
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-g~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSG-GKKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhC-CCeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 4699999999843 2368899999999999999986 6666655543 359999999877755 44556654433 4
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh---ccccccCCcceEEEEcc
Q 001750 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIKWQCMIVDE 436 (1018)
Q Consensus 360 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~---d~~~l~~i~w~~lIvDE 436 (1018)
.+.+-.|...-+. .+ . ........+.||+|-||+-+.. -...+. +...|||||
T Consensus 291 kvairVG~srIk~----~~-----~-------------pv~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDE 346 (830)
T COG1202 291 KVAIRVGMSRIKT----RE-----E-------------PVVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDE 346 (830)
T ss_pred eEEEEechhhhcc----cC-----C-------------ccccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeee
Confidence 4445556543221 10 0 0111234678999999998743 223333 456899999
Q ss_pred cccccCc--ccH---HHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHH
Q 001750 437 GHRLKNK--DSK---LFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1018)
Q Consensus 437 aHrlKn~--~s~---~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~ 510 (1018)
.|.|... .+. +...|+.+. ....+.||||- .|+.||..-|..--..
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV~-------------------------- 398 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAKLVL-------------------------- 398 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCeeEe--------------------------
Confidence 9999752 222 233333333 46789999995 5556655432210000
Q ss_pred HhhhHHHHHHHhhHhhcCC-CcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCC
Q 001750 511 MLAPHLLRRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1018)
Q Consensus 511 ~L~p~~lRR~k~dv~~~lP-~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~ 589 (1018)
-..-| |...+.+.+.=
T Consensus 399 --------------y~~RPVplErHlvf~~~------------------------------------------------- 415 (830)
T COG1202 399 --------------YDERPVPLERHLVFARN------------------------------------------------- 415 (830)
T ss_pred --------------ecCCCCChhHeeeeecC-------------------------------------------------
Confidence 00001 11122222210
Q ss_pred CCCccccHHHHHHHHhhhhHHHHHHHHHHHHHH----hC--CeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHH
Q 001750 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE----QG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (1018)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~----~g--~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~R 663 (1018)
.+.|..++.++.+.-.. .| ..+|||+.+.+-...|+++|..+|++..-++++.+-.+|
T Consensus 416 ----------------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eR 479 (830)
T COG1202 416 ----------------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKER 479 (830)
T ss_pred ----------------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHH
Confidence 12333333343332211 23 369999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCceEEEeecccccccccCCCCCEEEE----EcCCC-CcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDSDW-NPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 664 q~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi----~D~dw-Np~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
+.+-..|.+ +....+++|-|+|-|+++++ +.||| +..+| +|+.+.|..|||+|.|=...-.||-++-.|
T Consensus 480 k~vE~~F~~---q~l~~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 480 KSVERAFAA---QELAAVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHhc---CCcceEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999965 34457899999999999996 45544 44455 999999999999999988888888888654
No 108
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.50 E-value=2e-14 Score=127.24 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=73.7
Q ss_pred HHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhh
Q 001750 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1018)
Q Consensus 642 ~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRi 721 (1018)
.+|+..|+++..++|.++..+|+.+++.|+.... .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688899999999999999999999999988665 4899999999999999999999999999999999999999998
Q ss_pred C
Q 001750 722 G 722 (1018)
Q Consensus 722 G 722 (1018)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.48 E-value=2.6e-11 Score=147.75 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeeccc
Q 001750 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1018)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstra 686 (1018)
.+++..|.+-|....+.|.+||||+....+.+.|.++|...|+++..++|.++..+|.+++..|.. +.+.+|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~---G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL---GEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc---CCceEEEEcCh
Confidence 467777777788878889999999999999999999999999999999999999999999999965 44568999999
Q ss_pred ccccccCCCCCEEEEEcC-----CCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCC--HHHHHHH
Q 001750 687 GGLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS--IEERMMQ 744 (1018)
Q Consensus 687 gg~GINL~~ad~VIi~D~-----dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~T--vEe~i~~ 744 (1018)
+++|++++.+++||++|. +-+...++|++||++|.. . -.++-++...| +...|.+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999994 457889999999999973 2 33455555443 4444444
No 110
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.48 E-value=6.1e-13 Score=145.99 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc-
Q 001750 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR- 685 (1018)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr- 685 (1018)
-.|+.++.-||+--.= ..|.|||.+..++--.|.-+|+.-|++.+.+.|.++...|.-+|+.||.+- +-++|+|+
T Consensus 252 ~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~---YdivIAtD~ 327 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL---YDIVIATDD 327 (569)
T ss_pred chhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc---eeEEEEccC
Confidence 3466666666653222 349999999999999999999999999999999999999999999998643 34677777
Q ss_pred -------------------------c---------ccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001750 686 -------------------------A---------GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1018)
Q Consensus 686 -------------------------a---------gg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iy 730 (1018)
+ .+.||++..+++||.||.+-++..|++|+||..|-|.+-.+.-|
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 1 25799999999999999999999999999999998876665543
No 111
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.47 E-value=8.7e-13 Score=159.35 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeeccc
Q 001750 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1018)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstra 686 (1018)
..|+.-|..||....+ ..++|||++...-+|.|.+-|...||....++|.++..+|...|..|.+.. +.+|++|..
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~---~~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV---VNLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC---ceEEEehhh
Confidence 5588888888887776 569999999999999999999999999999999999999999999996644 459999999
Q ss_pred ccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 687 gg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
.+.||+......||+||.+-....++.|.||++|.|-+- .-|-|++.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999877777888888888888766 55566665
No 112
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.46 E-value=8.4e-13 Score=137.07 Aligned_cols=155 Identities=28% Similarity=0.339 Sum_probs=110.2
Q ss_pred CCCChhHHHHHHHHHHHhhcCC-CceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeC-CccHHHHHHHHHHHcCC-
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQ- 358 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~-~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P-~s~l~~W~~E~~~~~p~- 358 (1018)
..+++++|.+++..+. .. .++++..++|+|||..++.++....... ..++||++| .++..+|..++..+.+.
T Consensus 6 ~~~~~~~Q~~~~~~~~----~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALL----SGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3679999999998773 34 8999999999999998777776665543 469999999 56779999999998865
Q ss_pred --CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--ccCCcceEEEE
Q 001750 359 --MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIV 434 (1018)
Q Consensus 359 --~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~--l~~i~w~~lIv 434 (1018)
.....+.+... ...+... .....+++++||+.+...... +....++++|+
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 82 GLKVVGLYGGDSK-REQLRKL-------------------------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred CeEEEEEeCCcch-HHHHHHH-------------------------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEE
Confidence 33444444332 2222111 011238999999988765444 44557889999
Q ss_pred cccccccC-cccHHH-HHHHhc-ccccEEEEecCCC
Q 001750 435 DEGHRLKN-KDSKLF-SSLKQY-STRHRVLLTGTPL 467 (1018)
Q Consensus 435 DEaHrlKn-~~s~~~-~~l~~l-~~~~rllLTgTPl 467 (1018)
||+|.+.+ ...... ..+..+ ...+++++||||.
T Consensus 136 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~ 171 (201)
T smart00487 136 DEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPP 171 (201)
T ss_pred ECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCc
Confidence 99999985 333333 334444 4678899999996
No 113
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.44 E-value=1.5e-12 Score=148.47 Aligned_cols=316 Identities=22% Similarity=0.282 Sum_probs=197.9
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCC-----CC-ceEEEeCC-ccHHHHHHHHHHHcC
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-----IS-PHLVVAPL-STLRNWEREFATWAP 357 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~-----~~-p~LIV~P~-s~l~~W~~E~~~~~p 357 (1018)
..|-|..++-.+ ..+.+++-+..+|.|||+.- +-++..|.... .| ..+|+.|. .+..|-.+|+.+..-
T Consensus 159 Pt~iq~~aipvf----l~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 159 PTPIQKQAIPVF----LEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCcccchhhhhh----hcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 445677666544 57789999999999999774 33455554322 23 78999995 667889999988762
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc------cccCCcceE
Q 001750 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA------SLKPIKWQC 431 (1018)
Q Consensus 358 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~------~l~~i~w~~ 431 (1018)
+ -|+. .+ -..+..+..+.. + .......++++++.|+..+..... .+..+ ..
T Consensus 235 ~------~~t~-~~----a~~~~~~~~~~q--k--------~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V--~~ 291 (593)
T KOG0344|consen 235 D------EGTS-LR----AAQFSKPAYPSQ--K--------PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKV--EW 291 (593)
T ss_pred C------CCCc-hh----hhhcccccchhh--c--------cchhHHHHHHHHhcCHHHHHHHhcCCCccchhhee--ee
Confidence 2 1111 11 111222222211 0 111234578999999998865433 23444 45
Q ss_pred EEEcccccccCccc---HHHHHHHhccccc--EEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHH
Q 001750 432 MIVDEGHRLKNKDS---KLFSSLKQYSTRH--RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (1018)
Q Consensus 432 lIvDEaHrlKn~~s---~~~~~l~~l~~~~--rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~ 506 (1018)
+|+|||.++.+... ++...+....+.+ +=++|||- ...++
T Consensus 292 lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~-----------------------------------~~~VE 336 (593)
T KOG0344|consen 292 LVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATI-----------------------------------SVYVE 336 (593)
T ss_pred EeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccc-----------------------------------cHHHH
Confidence 99999999877611 1122222221211 11222221 01111
Q ss_pred HHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCccccc
Q 001750 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1018)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~ 586 (1018)
++..++ +.+ ...|.|.+.+.+.. .+..+|.-|
T Consensus 337 E~~~~i--------~~~---------~~~vivg~~~sa~~------------------------~V~QelvF~------- 368 (593)
T KOG0344|consen 337 EWAELI--------KSD---------LKRVIVGLRNSANE------------------------TVDQELVFC------- 368 (593)
T ss_pred HHHHHh--------hcc---------ceeEEEecchhHhh------------------------hhhhhheee-------
Confidence 111111 111 11233333333200 001111111
Q ss_pred CCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHH-hhCCCcEEEEeCCCChHHHHH
Q 001750 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQI 665 (1018)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L-~~~g~~~~rldG~~~~~~Rq~ 665 (1018)
...-+|+..+..++.... .-.+|||.|...-...|-..| ...++.+..++|..+..+|..
T Consensus 369 -----------------gse~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 369 -----------------GSEKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDE 429 (593)
T ss_pred -----------------ecchhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHH
Confidence 113567777777776643 358999999999988888888 788999999999999999999
Q ss_pred HHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 666 ~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
.+++|.. +.+-+|++|...+.||++.+++.||+||.+-.-..++.++||.+|-|+.-.. |-|++.
T Consensus 430 ~~~~FR~---g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A--itfytd 494 (593)
T KOG0344|consen 430 TMERFRI---GKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA--ITFYTD 494 (593)
T ss_pred HHHHHhc---cCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce--EEEecc
Confidence 9999965 4455899999999999999999999999999999999999999999986443 344444
No 114
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.43 E-value=6.5e-12 Score=150.48 Aligned_cols=319 Identities=18% Similarity=0.237 Sum_probs=185.7
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC---------CCCceEEEeCC-ccH----HHHHHH
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPL-STL----RNWERE 351 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~---------~~~p~LIV~P~-s~l----~~W~~E 351 (1018)
|---|-+..- -.|..+.|.|++.++|.|||..|...|..++++ +.-+++.|+|. ++. .+|..-
T Consensus 111 fN~iQS~vFp---~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kk 187 (1230)
T KOG0952|consen 111 FNRIQSEVFP---VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKK 187 (1230)
T ss_pred HHHHHHHhhh---hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhh
Confidence 3334444432 346789999999999999999987666666553 11288999995 444 345555
Q ss_pred HHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh-------ccccc
Q 001750 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-------DSASL 424 (1018)
Q Consensus 352 ~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~-------d~~~l 424 (1018)
|.-| ++.|..++|+...-+. ...+.+|+|||+|..-- +...+
T Consensus 188 l~~~--gi~v~ELTGD~ql~~t-----------------------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 188 LAPL--GISVRELTGDTQLTKT-----------------------------EIADTQIIVTTPEKWDVVTRKSVGDSALF 236 (1230)
T ss_pred cccc--cceEEEecCcchhhHH-----------------------------HHHhcCEEEecccceeeeeeeeccchhhh
Confidence 5444 6889999998653210 13467899999987621 11222
Q ss_pred cCCcceEEEEcccccccCccc-----HHHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHH
Q 001750 425 KPIKWQCMIVDEGHRLKNKDS-----KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE 495 (1018)
Q Consensus 425 ~~i~w~~lIvDEaHrlKn~~s-----~~~~~l~~l----~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~ 495 (1018)
. ...+|||||.|-|..... ...+.++.. +.-+.++||||- -|+.|+ ..||..+.....-.|...
T Consensus 237 ~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl--PN~eDv---A~fL~vn~~~glfsFd~~ 309 (1230)
T KOG0952|consen 237 S--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL--PNYEDV---ARFLRVNPYAGLFSFDQR 309 (1230)
T ss_pred h--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHH---HHHhcCCCccceeeeccc
Confidence 2 246899999999976543 233333222 233678999993 244444 456665544444444444
Q ss_pred HhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCC--HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Q 001750 496 FKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELS--SKQKEYYKAILTRNYQILTRRGGAQISLINVV 573 (1018)
Q Consensus 496 ~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls--~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l 573 (1018)
|... | .....+-+.-. ..|.+..
T Consensus 310 yRPv-----------------------------p-L~~~~iG~k~~~~~~~~~~~------------------------- 334 (1230)
T KOG0952|consen 310 YRPV-----------------------------P-LTQGFIGIKGKKNRQQKKNI------------------------- 334 (1230)
T ss_pred cccc-----------------------------c-eeeeEEeeecccchhhhhhH-------------------------
Confidence 4211 0 00011110000 0000000
Q ss_pred HHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHh----hCCC
Q 001750 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKW 649 (1018)
Q Consensus 574 ~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~ 649 (1018)
..+++..+.+ ...+||.|+||++.....--.+..|. ..|.
T Consensus 335 --------------------------------d~~~~~kv~e----~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~ 378 (1230)
T KOG0952|consen 335 --------------------------------DEVCYDKVVE----FLQEGHQVLVFVHSRNETIRTAKKLRERAETNGE 378 (1230)
T ss_pred --------------------------------HHHHHHHHHH----HHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCc
Confidence 1112222222 23468899999887554333333332 2222
Q ss_pred c-------------------EEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcch
Q 001750 650 Q-------------------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 710 (1018)
Q Consensus 650 ~-------------------~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~ 710 (1018)
+ ...-+.++.-.+|+..-+.|..+. +-+|++|..++.|+||++--.+|-=-.-|++..
T Consensus 379 ~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~---i~vL~cTaTLAwGVNLPA~aViIKGT~~ydssk 455 (1230)
T KOG0952|consen 379 KDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGH---IKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSK 455 (1230)
T ss_pred ccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCC---ceEEEecceeeeccCCcceEEEecCCccccccc
Confidence 1 233455677788888888896643 348999999999999997555554444455554
Q ss_pred ----------HHHHHHHHHhhCCCCcEEEEEEeeCCCHH
Q 001750 711 ----------DLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1018)
Q Consensus 711 ----------~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvE 739 (1018)
-+|-+|||+|.+=.+.-..+-+-+.++++
T Consensus 456 g~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 456 GSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred CceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 68999999998755555555455544443
No 115
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.42 E-value=1.5e-12 Score=127.20 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=99.3
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcC-CCCceEEEeCCccHH-HHHHHHHHHcC-CCeEEEEecChHHHHHHHHhhhcC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWEREFATWAP-QMNVVMYVGTSQARNIIREYEFYF 381 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~-~~~p~LIV~P~s~l~-~W~~E~~~~~p-~~~vv~y~g~~~~r~~i~~~e~~~ 381 (1018)
+++++..++|+|||.+++.++..+... ..+++||++|...+. +|...+..+.. ...+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 368999999999999999999888765 456999999987664 55666777774 4677777766544332211
Q ss_pred CCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--ccCCcceEEEEcccccccCcccHHH---HHHHhccc
Q 001750 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYST 456 (1018)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~--l~~i~w~~lIvDEaHrlKn~~s~~~---~~l~~l~~ 456 (1018)
.....+++++||+.+...... +..-.|+++|+||+|.+.+...... ........
T Consensus 76 ---------------------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~ 134 (144)
T cd00046 76 ---------------------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD 134 (144)
T ss_pred ---------------------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCcc
Confidence 124678999999988765433 2344789999999999988765543 34444567
Q ss_pred ccEEEEecCC
Q 001750 457 RHRVLLTGTP 466 (1018)
Q Consensus 457 ~~rllLTgTP 466 (1018)
..++++||||
T Consensus 135 ~~~i~~saTp 144 (144)
T cd00046 135 RQVLLLSATP 144 (144)
T ss_pred ceEEEEeccC
Confidence 7899999998
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=2.5e-11 Score=147.97 Aligned_cols=117 Identities=16% Similarity=0.201 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..|.+.+..+...|..|||||+++...+.|..+|...|+++..|++ ...+|++.|-.|... ...++|+|.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~---~g~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ---KGAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC---CCeEEEecc
Confidence 356999999999999999999999999999999999999999999999998 577899999999543 335899999
Q ss_pred cccccccCCCCC--------EEEEEcCCCCcchHHHHHHHHHhhCCCCcE
Q 001750 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1018)
Q Consensus 686 agg~GINL~~ad--------~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V 727 (1018)
.+|.|+++.-.+ +||.++.+-+...|.|++||++|.|..-..
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 999999998444 348888888999999999999999987554
No 117
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.40 E-value=2.4e-10 Score=140.35 Aligned_cols=123 Identities=21% Similarity=0.257 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeeccc
Q 001750 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1018)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstra 686 (1018)
.+++..|...|.....+|.+||||+......+.|.++|...|+++..++|.++..+|..++..|.. +.+.+|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~---g~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc---CCceEEEEeCH
Confidence 456777777788888889999999999999999999999999999999999999999999999965 34568999999
Q ss_pred ccccccCCCCCEEEEEcCC-----CCcchHHHHHHHHHhhCCCCcEEEEEEeeC
Q 001750 687 GGLGINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1018)
Q Consensus 687 gg~GINL~~ad~VIi~D~d-----wNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~ 735 (1018)
++.|++++.+++||++|.+ -++..++|++||++|- . .-.++.|++.
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999974 5888999999999994 2 3345566654
No 118
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.39 E-value=5.9e-12 Score=138.85 Aligned_cols=217 Identities=24% Similarity=0.276 Sum_probs=132.1
Q ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHHHhc---CC--c----------chhHHHHHHHHHHhhCcccccC-CCCCCccc
Q 001750 532 KELILRVELSSKQKEYYKAILTRNYQILTRR---GG--A----------QISLINVVMELRKLCCHPYMLE-GVEPDIED 595 (1018)
Q Consensus 532 ~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~---~~--~----------~~~l~~~l~~Lrk~c~hP~l~~-~~~~~~~~ 595 (1018)
.++.++++|+..|+++|+.++.-.+..+.+. .. . ...+...+.+|+.+|+||+|.- ...+....
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 4688999999999999999998776655321 11 1 1334556778999999999863 22233333
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHH-----HHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHH---
Q 001750 596 TNESFKQLLESSGKLQLLDKMMVKL-----KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI--- 667 (1018)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~klL~~l-----~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i--- 667 (1018)
..+....+...|||+.+|..+|..+ ...+.+++|.++..+++|+|+.+|...++.|.|++|.....+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 4445567789999999999999999 66688999999999999999999999999999999976544333221
Q ss_pred ---------HHhccCCCCc-eEEEeecccccc----cccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEe
Q 001750 668 ---------DRFNAKNSSR-FCFLLSTRAGGL----GINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1018)
Q Consensus 668 ---------~~Fn~~~s~~-~v~Llstragg~----GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlv 733 (1018)
...+...+.. .++|++|.-... .++-...|.||-||+.+++....-..-|.+.-.+ +.+-|++||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv 242 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLV 242 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEe
Confidence 1111222233 345555544433 2344467999999999999986544444433223 889999999
Q ss_pred eCCCHHHHHHHHHHHH
Q 001750 734 TRGSIEERMMQMTKKK 749 (1018)
Q Consensus 734 t~~TvEe~i~~~~~~K 749 (1018)
..+|+|.-++...+..
T Consensus 243 ~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 243 PSNSIEHIELCFPKSS 258 (297)
T ss_dssp ETTSHHHHHHHHTTTS
T ss_pred eCCCHHHHHHHccCcc
Confidence 9999999887766644
No 119
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.2e-12 Score=137.12 Aligned_cols=312 Identities=18% Similarity=0.229 Sum_probs=202.0
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC--CCceEEEeCCccHHHHH-HHHHHHcCCC--
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWE-REFATWAPQM-- 359 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~--~~p~LIV~P~s~l~~W~-~E~~~~~p~~-- 359 (1018)
++..-|..|+-=+ .+|.+++.-...|+|||.+-...+....... ..-+||++|...+.+-. .-...+++.+
T Consensus 48 kPSaIQqraI~p~----i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 48 KPSAIQQRAILPC----IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred CchHHHhcccccc----ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 3445666665322 6789999999999999988433333332221 23689999998775543 3344555444
Q ss_pred eEEEEecChHHH-HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh--ccccccCCcceEEEEcc
Q 001750 360 NVVMYVGTSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDE 436 (1018)
Q Consensus 360 ~vv~y~g~~~~r-~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~--d~~~l~~i~w~~lIvDE 436 (1018)
++....|....+ ..- .......+|++.|+..+.. +...|..-...+.|+||
T Consensus 124 ~v~~~igg~~~~~~~~--------------------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 124 SVHACIGGTNVRREDQ--------------------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDE 177 (397)
T ss_pred eeeeecCcccchhhhh--------------------------hhhccCceeecCCchhHHHhhccccccccceeEEeecc
Confidence 444444433222 110 0112457899999866532 22355555678999999
Q ss_pred cccccC--cccHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhh
Q 001750 437 GHRLKN--KDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1018)
Q Consensus 437 aHrlKn--~~s~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1018)
|...+. ...+++..+..+..+ ..+++|||- +.|+.-
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~----p~~vl~------------------------------------- 216 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM----PSDVLE------------------------------------- 216 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCcchhheeecccC----cHHHHH-------------------------------------
Confidence 988754 455677777777644 567889883 111110
Q ss_pred hHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCc
Q 001750 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 514 p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~ 593 (1018)
-++ ..+... ..+.+.=...+.+.. + +-|..-
T Consensus 217 -----vt~-----~f~~~p-v~i~vkk~~ltl~gi----------------------------k----q~~i~v------ 247 (397)
T KOG0327|consen 217 -----VTK-----KFMREP-VRILVKKDELTLEGI----------------------------K----QFYINV------ 247 (397)
T ss_pred -----HHH-----HhccCc-eEEEecchhhhhhhe----------------------------e----eeeeec------
Confidence 000 000000 001111000000000 0 000000
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccC
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~ 673 (1018)
....|+..|..+.. .-...+||++..+-++.|.+.|...|+....++|.+...+|..++..|+.+
T Consensus 248 -----------~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g 312 (397)
T KOG0327|consen 248 -----------EKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG 312 (397)
T ss_pred -----------cccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC
Confidence 01117777777776 334689999999999999999999999999999999999999999999876
Q ss_pred CCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 674 ~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
.+. +|++|...+.||+++.++.||+||.|-|..+|+.++||++|.|-+- ....+++..
T Consensus 313 ssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 313 SSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred Cce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 654 7999999999999999999999999999999999999999999643 334566554
No 120
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.37 E-value=1.1e-12 Score=116.37 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=75.3
Q ss_pred HHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHH
Q 001750 639 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (1018)
Q Consensus 639 iL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~ 718 (1018)
.|.++|...++.+..++|.++..+|+.+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999987554 5899999999999999999999999999999999999999
Q ss_pred HhhC
Q 001750 719 HRLG 722 (1018)
Q Consensus 719 hRiG 722 (1018)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 121
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.36 E-value=3.3e-11 Score=153.44 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=88.3
Q ss_pred hCCeEEEEechhhHHHHHHHHHhhCC---CcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEE
Q 001750 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1018)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g---~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~V 699 (1018)
....+|||......++.+.+.|...+ +.+.-++|+++.++|+.++..+ + . ..+||||..+..||+++..++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-C-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4578899999999999885443 2 2 2479999999999999999999
Q ss_pred EEEcC----CC--------------CcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHH
Q 001750 700 IIYDS----DW--------------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1018)
Q Consensus 700 Ii~D~----dw--------------Np~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe 740 (1018)
|-++. -+ +-....||.||++|.| +-.+|+|+++...+.
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 98762 12 2357899999999987 777899998765443
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=2.3e-10 Score=139.44 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=97.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|...+.+-+..+.+.|..|||-+.++..-+.|...|...|+++..++.... +.-..+|.. ++..+ .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeec
Confidence 457899999999999999999999999999999999999999999999998743 333345543 33334 4799999
Q ss_pred cccccccCCCC--------CEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEE
Q 001750 686 AGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1018)
Q Consensus 686 agg~GINL~~a--------d~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~I 729 (1018)
.+|.|.++.-. =+||.-..+-|...+.|..||++|.|..-....
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 99999887633 378999999999999999999999998765443
No 123
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.34 E-value=5e-11 Score=148.36 Aligned_cols=356 Identities=15% Similarity=0.159 Sum_probs=209.0
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC---CCceEEEeCCccH-HHHHHHHHHHcCCC
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL-RNWEREFATWAPQM 359 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l-~~W~~E~~~~~p~~ 359 (1018)
...+++|..+++.....+..+..++|..+||.|||..++....+..... ...++.|.|..++ .+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3468999999999887776666899999999999999998888887763 4488888886554 66777788887555
Q ss_pred eEEEE--ecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEcc-HHHHhhc-----cccccCCcceE
Q 001750 360 NVVMY--VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTS-YEMINLD-----SASLKPIKWQC 431 (1018)
Q Consensus 360 ~vv~y--~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitT-ye~l~~d-----~~~l~~i~w~~ 431 (1018)
.+..- +|.......... +. . .... ..........-+.+.+++ .+.+... ...+..+.-.+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~-~~-------~--~~~~--~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEP-DQ-------D--ILLT--LTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred ccccccccccccchhhhcc-cc-------c--ccee--EEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 55444 555443321111 00 0 0000 000000011122333333 3333211 11133345678
Q ss_pred EEEcccccccCc-ccHHHHHHHhc-c--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHH
Q 001750 432 MIVDEGHRLKNK-DSKLFSSLKQY-S--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1018)
Q Consensus 432 lIvDEaHrlKn~-~s~~~~~l~~l-~--~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~ 507 (1018)
+|+||+|-+--. ......++..+ . ....|++|||+- ..|.+.
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~------------ 387 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEK------------ 387 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHH------------
Confidence 999999988555 23333333222 2 457899999971 111111
Q ss_pred HHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccC
Q 001750 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1018)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~ 587 (1018)
|...+.. . ...+. ..+ ....++.|.+..
T Consensus 388 l~~~~~~----~-~~~~~-~~~----------------------------------------------~~~~~~e~~~~~ 415 (733)
T COG1203 388 LKKALGK----G-REVVE-NAK----------------------------------------------FCPKEDEPGLKR 415 (733)
T ss_pred HHHHHhc----c-cceec-ccc----------------------------------------------cccccccccccc
Confidence 1111100 0 00000 000 000001111111
Q ss_pred CCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHH
Q 001750 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1018)
Q Consensus 588 ~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i 667 (1018)
....... .... ..+...+..-...|.+|+|.++.+...-.+...|+..+.++..+++..+...|.+.+
T Consensus 416 ~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 416 KERVDVE-----------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccchhhh-----------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 0000000 0000 122223333445689999999999999999999998887899999999999999998
Q ss_pred HHhccC-CCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhC--CCCcEEEEEEeeCCCHHHHHHH
Q 001750 668 DRFNAK-NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QTNKVMIFRLITRGSIEERMMQ 744 (1018)
Q Consensus 668 ~~Fn~~-~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiG--Q~k~V~Iyrlvt~~TvEe~i~~ 744 (1018)
+....- ......++|+|++...|+|+. .|.+| -|+. -....+||.||++|-| ....+.||...-......+.++
T Consensus 484 ~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI-Te~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 484 RELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI-TELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred HHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee-ecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 865531 111224899999999999998 56654 3332 2567899999999999 5677888888877777777777
Q ss_pred HHHHHHHH
Q 001750 745 MTKKKMVL 752 (1018)
Q Consensus 745 ~~~~K~~l 752 (1018)
....++.-
T Consensus 561 ~~~~~~~~ 568 (733)
T COG1203 561 KLEKKLKS 568 (733)
T ss_pred cchhhhcc
Confidence 66665543
No 124
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.34 E-value=1.3e-11 Score=153.05 Aligned_cols=313 Identities=16% Similarity=0.151 Sum_probs=213.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC-CCCceEEEeCC-ccHHHHHHHHHHHcCCCeE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~-~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~v 361 (1018)
...||-|+++|+-+ ..|..+++-..+|-||++.- .|-.- ..+-+|||.|+ ||+.-...-+.. .+++.
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCY-----QlPA~l~~gitvVISPL~SLm~DQv~~L~~--~~I~a 331 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCY-----QLPALLLGGVTVVISPLISLMQDQVTHLSK--KGIPA 331 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEe-----eccccccCCceEEeccHHHHHHHHHHhhhh--cCcce
Confidence 46999999999743 68999999999999999653 11110 13478999995 666555555522 36777
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccccc---C-C---cceEEEE
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLK---P-I---KWQCMIV 434 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~---~-i---~w~~lIv 434 (1018)
..+.+..........+... ..+....+++-.|+|.+......+. . . ...++||
T Consensus 332 ~~L~s~q~~~~~~~i~q~l--------------------~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 332 CFLSSIQTAAERLAILQKL--------------------ANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI 391 (941)
T ss_pred eeccccccHHHHHHHHHHH--------------------hCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEe
Confidence 7777776655432222111 1122467899999999976533221 1 1 2578999
Q ss_pred cccccccCcc-------cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHH
Q 001750 435 DEGHRLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1018)
Q Consensus 435 DEaHrlKn~~-------s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~ 507 (1018)
||||-..... .++......+...-.|.||||--..--.++...|+.-+|..+.+.
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------------------ 453 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------------------ 453 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------------------
Confidence 9999875432 233333333334467899999755555666666666655533211
Q ss_pred HHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccC
Q 001750 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1018)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~ 587 (1018)
..++.-.+-|....+ ...+..++...
T Consensus 454 -------------------fnR~NL~yeV~~k~~------------------------~~~~~~~~~~~----------- 479 (941)
T KOG0351|consen 454 -------------------FNRPNLKYEVSPKTD------------------------KDALLDILEES----------- 479 (941)
T ss_pred -------------------CCCCCceEEEEeccC------------------------ccchHHHHHHh-----------
Confidence 122222233322221 00111111111
Q ss_pred CCCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHH
Q 001750 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1018)
Q Consensus 588 ~~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i 667 (1018)
+....+.-.||||....+.+.+..+|...|++..-++++++..+|+.+-
T Consensus 480 -------------------------------~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq 528 (941)
T KOG0351|consen 480 -------------------------------KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQ 528 (941)
T ss_pred -------------------------------hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHH
Confidence 1123456889999999999999999999999999999999999999999
Q ss_pred HHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEe
Q 001750 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1018)
Q Consensus 668 ~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlv 733 (1018)
..|..+. +.++++|=|.|.|||-+.+..||+|..+-+-.-|-|..|||+|-|+-..+..|+=.
T Consensus 529 ~~w~~~~---~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 529 KAWMSDK---IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred HHHhcCC---CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 9997644 56899999999999999999999999999999999999999999998877655433
No 125
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.33 E-value=8.1e-11 Score=149.38 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred hCCeEEEEechhhHHHHHHHHHhhCCCc---EEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEE
Q 001750 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1018)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~---~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~V 699 (1018)
....+|||......++.+.+.|...+++ +.-++|+++..+|+.+++.+ +...+||+|..++.||++++.++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3568999999999999999999887765 56789999999999886542 234589999999999999999999
Q ss_pred EEEc---------------CCCCc---chHHHHHHHHHhhCCCCcEEEEEEeeCCCHH
Q 001750 700 IIYD---------------SDWNP---HADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1018)
Q Consensus 700 Ii~D---------------~dwNp---~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvE 739 (1018)
|.++ .+-.| ..+.||.||++|. .+-.+|+|+++...+
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 9875 22223 4688888888887 467789999875443
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=2.5e-10 Score=135.87 Aligned_cols=130 Identities=20% Similarity=0.194 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..+.+-+..+.+.|..|||.+..+..-+.|...|...|+++..|..... +.-..+|.+= +..+ .+-|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCCC--cEEEEec
Confidence 456889999999999999999999999999999999999999999999998744 3335555543 3333 4799999
Q ss_pred cccccccCCCC---------------CEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHH
Q 001750 686 AGGLGINLATA---------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1018)
Q Consensus 686 agg~GINL~~a---------------d~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~ 745 (1018)
.+|.|.++.-. =+||.-...-|-..+.|..||++|.|..-....|- |+|..++.+
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~ 553 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAA 553 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHh
Confidence 99999887632 37898888899999999999999999876554432 455555543
No 127
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.28 E-value=2.2e-11 Score=133.40 Aligned_cols=311 Identities=18% Similarity=0.259 Sum_probs=207.8
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcCC-CC-ceEEEeCCccH-HHH---HHHHHHHcC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-IS-PHLVVAPLSTL-RNW---EREFATWAP 357 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~~-~~-p~LIV~P~s~l-~~W---~~E~~~~~p 357 (1018)
+..|.|...++-+ -.+..++-..-+|.|||..- |-.+..|.... .+ +.||+.|+.-| .|- ..++.+++
T Consensus 43 ~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 4667777777644 45666666778999999774 33444444332 23 89999997555 443 34444544
Q ss_pred CCeEE-EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEE
Q 001750 358 QMNVV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 434 (1018)
Q Consensus 358 ~~~vv-~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~--~l~~i~w~~lIv 434 (1018)
+++.. .|.|+....+.+.- ....|||+.|+..+..-.. .|.--...+||+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l---------------------------~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILL---------------------------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred chhhhhhcccchHHHHHHHh---------------------------ccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 55555 55566554433211 1256899999887754322 133334578999
Q ss_pred ccccccc--CcccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHH
Q 001750 435 DEGHRLK--NKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1018)
Q Consensus 435 DEaHrlK--n~~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1018)
|||.+|- +.+-++.+.+..+. +...+++|||- .+.+ -+|.. .-
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~l------------------v~fak---------------aG 216 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDL------------------VDFAK---------------AG 216 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhh------------------HHHHH---------------cc
Confidence 9999995 45678888888886 45689999994 1111 11110 00
Q ss_pred hhhHHHHHHHhhHhhcCCCcEEEEEEec--CCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCC
Q 001750 512 LAPHLLRRVKKDVMKELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1018)
Q Consensus 512 L~p~~lRR~k~dv~~~lP~k~e~iv~v~--ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~ 589 (1018)
| .||.... +.|+ +++ ..+++
T Consensus 217 l---------------~~p~lVR-ldvetkise------------------------------~lk~~------------ 238 (529)
T KOG0337|consen 217 L---------------VPPVLVR-LDVETKISE------------------------------LLKVR------------ 238 (529)
T ss_pred C---------------CCCceEE-eehhhhcch------------------------------hhhhh------------
Confidence 0 1111111 1110 000 00011
Q ss_pred CCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHH
Q 001750 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
...+....|...|..++..... ..+.+||+.-....+.+...|...|+...-+.|++...-|..-+.+
T Consensus 239 -----------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 239 -----------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred -----------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccc
Confidence 1112234566667666665443 4589999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
|+.... -+|++|+.+..|++++-.|+||.||.+-.+..+..|.||+.|-|.+- .-|-||+..
T Consensus 307 F~~~k~---~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 307 FRGRKT---SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred ccCCcc---ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 976444 48999999999999999999999999999999999999999988653 456777654
No 128
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=99.25 E-value=9.1e-12 Score=102.61 Aligned_cols=44 Identities=59% Similarity=0.902 Sum_probs=39.9
Q ss_pred CCCCchHHHHHHHhHHHHHHHHHHHhcCCCCCCcccccccchhh
Q 001750 862 NSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDD 905 (1018)
Q Consensus 862 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 905 (1018)
++.+++||++||+++|+++|+++...||||||.||||+|..+++
T Consensus 20 ~~~~~~yWe~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~~ 63 (66)
T PF06465_consen 20 ESTDPNYWEKLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEEDD 63 (66)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 45699999999999999999999999999999999999976544
No 129
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.23 E-value=1.5e-10 Score=122.08 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=105.2
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHH-HHHHHHHhcC---CCCceEEEeCC-ccHHHHHHHHHHHcC--
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE---RISPHLVVAPL-STLRNWEREFATWAP-- 357 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqa-i~~l~~l~~~---~~~p~LIV~P~-s~l~~W~~E~~~~~p-- 357 (1018)
.+++||.++++-+ .++.++++..++|.|||+.. +.++..+... ....+|||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~----~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPL----LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5889999999766 34889999999999999885 4455555554 23378999995 667889998888864
Q ss_pred CCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEc
Q 001750 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1018)
Q Consensus 358 ~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~~l~~i~w~~lIvD 435 (1018)
+.++..++|..........+ ....+|+|+|++.+.... ..+.--.++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--------------------------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 57778888876544322111 125689999988764421 11222356899999
Q ss_pred ccccccCcc--cHHHHHHHhcc-cccEEEEecCCC
Q 001750 436 EGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPL 467 (1018)
Q Consensus 436 EaHrlKn~~--s~~~~~l~~l~-~~~rllLTgTPl 467 (1018)
|+|.+.+.. ..+...+..+. ....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986443 12222333444 456799999984
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=8e-10 Score=134.72 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..+.+-+..+.+.|..|||-+.++..-+.|..+|...|+++..|+.... +.-..+|. +++..+ .+-|+|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEecc
Confidence 467999999999999999999999999999999999999999999998888643 33345555 344444 4689999
Q ss_pred cccccccCC-------------------------------------CCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEE
Q 001750 686 AGGLGINLA-------------------------------------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 686 agg~GINL~-------------------------------------~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
.+|.|.|+. +.=+||.-...=|-..|.|..||++|.|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999998874 2237888899999999999999999999876554
Q ss_pred EE
Q 001750 729 IF 730 (1018)
Q Consensus 729 Iy 730 (1018)
.|
T Consensus 586 f~ 587 (913)
T PRK13103 586 FY 587 (913)
T ss_pred EE
Confidence 43
No 131
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.22 E-value=8e-11 Score=120.01 Aligned_cols=155 Identities=20% Similarity=0.269 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHh-cCCCCceEEEeCC-ccHHHHHHHHHHHcC--CCeEEE
Q 001750 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPL-STLRNWEREFATWAP--QMNVVM 363 (1018)
Q Consensus 288 ~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~-~~~~~p~LIV~P~-s~l~~W~~E~~~~~p--~~~vv~ 363 (1018)
|+|.+++.-+ ..+++.++...+|.|||..++..+.... ......+||++|. +++.+-..++..++. ..++..
T Consensus 2 ~~Q~~~~~~i----~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAI----ISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHH----HTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHH----HcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 7999998876 3678899999999999999876555544 4433599999995 677888888988884 468888
Q ss_pred EecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--ccCCcceEEEEccccccc
Q 001750 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLK 441 (1018)
Q Consensus 364 y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~--l~~i~w~~lIvDEaHrlK 441 (1018)
++|........... -....+|+|+|++.+...... +.-...++||+||+|.+-
T Consensus 78 ~~~~~~~~~~~~~~-------------------------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~ 132 (169)
T PF00270_consen 78 LHGGQSISEDQREV-------------------------LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS 132 (169)
T ss_dssp ESTTSCHHHHHHHH-------------------------HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH
T ss_pred cccccccccccccc-------------------------ccccccccccCcchhhccccccccccccceeeccCcccccc
Confidence 87765422111110 013578999999999764432 112236899999999996
Q ss_pred Cc--ccHHHHHHHhc---ccccEEEEecCCCCCCHH
Q 001750 442 NK--DSKLFSSLKQY---STRHRVLLTGTPLQNNLD 472 (1018)
Q Consensus 442 n~--~s~~~~~l~~l---~~~~rllLTgTPlqN~~~ 472 (1018)
.. .......+..+ ...+.+++||||- .+++
T Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 133 DETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 63 22333333443 2356899999995 4443
No 132
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.16 E-value=1e-09 Score=133.43 Aligned_cols=72 Identities=29% Similarity=0.486 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEE-----EcCC---C---CcchHHHHHH
Q 001750 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YDSD---W---NPHADLQAMA 716 (1018)
Q Consensus 648 g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi-----~D~d---w---Np~~~~Qa~g 716 (1018)
.|.|..-+.+++..+|+..-+-|.+ +.+-+|+||...+-|+||++ +|||| |||. | +|...+|.+|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~---g~iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD---GHIQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc---CceeEEEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 4678889999999999999999965 34458999999999999996 88887 6664 4 6889999999
Q ss_pred HHHhhCC
Q 001750 717 RAHRLGQ 723 (1018)
Q Consensus 717 R~hRiGQ 723 (1018)
||+|.+-
T Consensus 683 ragrp~~ 689 (1674)
T KOG0951|consen 683 RAGRPQY 689 (1674)
T ss_pred hcCCCcc
Confidence 9999763
No 133
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.12 E-value=4.8e-08 Score=110.79 Aligned_cols=131 Identities=20% Similarity=0.292 Sum_probs=107.4
Q ss_pred HHHHHHHH---HHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccc
Q 001750 613 LDKMMVKL---KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGL 689 (1018)
Q Consensus 613 L~klL~~l---~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~ 689 (1018)
++.++.++ .+.|.||||-+--.+|.+-|.+||...|+++..++..+..-+|.++|..... +.|-+|+...-+-+
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~---G~~DvLVGINLLRE 508 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINLLRE 508 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc---CCccEEEeehhhhc
Confidence 44444444 4568999999999999999999999999999999999999999999999965 44558999999999
Q ss_pred cccCCCCCEEEEEcCC-----CCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHHHHH
Q 001750 690 GINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1018)
Q Consensus 690 GINL~~ad~VIi~D~d-----wNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~ 747 (1018)
||+|+.+..|.|+|-| -+-...+|.+|||-|--.- +|..|-=...+|+++.|-+...
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETER 570 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHH
Confidence 9999999999999998 4788999999999995433 4544544445567777655443
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=1.1e-08 Score=123.79 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..+.+-+..+.+.|..|||.+..+...+.|..+|...|+++..++.... +.-..+|. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCCCCC--eEEEecc
Confidence 457888888888888999999999999999999999999999999999998643 33334454 344444 5799999
Q ss_pred cccccccCCCCC--------EEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001750 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1018)
Q Consensus 686 agg~GINL~~ad--------~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iy 730 (1018)
.+|.|.++.-.. +||....+=|-..+.|..||++|.|..-....|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987544 899999999999999999999999987655443
No 135
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.12 E-value=1.5e-09 Score=116.84 Aligned_cols=300 Identities=17% Similarity=0.147 Sum_probs=189.9
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv 362 (1018)
.+.||.|++++|-. ..+..++|...+|-||++.--. -.|. ..|-.|||||+ |++....-.++...-+....
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyql--pal~--adg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQL--PALC--ADGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhhh--hHHh--cCCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 35889999999876 6789999999999999975311 1111 13578999996 67766666677665333222
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-------cccCCcceEEEEc
Q 001750 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQCMIVD 435 (1018)
Q Consensus 363 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~-------~l~~i~w~~lIvD 435 (1018)
--..++..-... +-++ .....+|..+..|++.+.+... .+..-.|.++-||
T Consensus 165 nansske~~k~v-~~~i---------------------~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 165 NANSSKEEAKRV-EAAI---------------------TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred cCcccHHHHHHH-HHHH---------------------cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 212222211111 1111 1123578889999998865433 2334467899999
Q ss_pred ccccccC-------cccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHH
Q 001750 436 EGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1018)
Q Consensus 436 EaHrlKn-------~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1018)
|+|-+.. ..+.+...-++++....++||||...+-+.+...+|..-..-
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~------------------------ 278 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAF------------------------ 278 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhh------------------------
Confidence 9987643 233333334556677889999998655544433322211000
Q ss_pred HHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCC
Q 001750 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1018)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~ 588 (1018)
..|--.|.|-|.-.
T Consensus 279 ------------------------------------------------------------------tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 279 ------------------------------------------------------------------TFRAGFNRPNLKYE 292 (695)
T ss_pred ------------------------------------------------------------------eeecccCCCCceeE
Confidence 01111122222211
Q ss_pred CCCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHH
Q 001750 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1018)
Q Consensus 589 ~~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~ 668 (1018)
+...+...++- +.-+.+++..-. .|..-||||-...--+.+...|+..|+....++..+.+++|.-+-+
T Consensus 293 v~qkp~n~dd~----------~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 293 VRQKPGNEDDC----------IEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred eeeCCCChHHH----------HHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 11111111111 111223332211 3778899999888899999999999999999999999998888877
Q ss_pred HhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHH
Q 001750 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMAR 717 (1018)
Q Consensus 669 ~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR 717 (1018)
.+- ++.+-++++|-|.|.||+-+.+..||+-..+-+-.++-||-+|
T Consensus 362 ~w~---a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasar 407 (695)
T KOG0353|consen 362 GWI---AGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASAR 407 (695)
T ss_pred ccc---ccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHH
Confidence 774 3556689999999999999999999999999999999995443
No 136
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.10 E-value=1.2e-09 Score=138.88 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=63.3
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCcc-HHHHHH-HHH---HHc
Q 001750 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWER-EFA---TWA 356 (1018)
Q Consensus 282 ~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~~W~~-E~~---~~~ 356 (1018)
.|.+.||.|.+.++.+...+..+..+++-..+|+|||+..+.-+..... ...+++|.||+.. ..|+.. ++. +.+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 4568999999988888777788888999999999999987665544433 3459999999755 467643 444 333
Q ss_pred C-CCeEEEEecCh
Q 001750 357 P-QMNVVMYVGTS 368 (1018)
Q Consensus 357 p-~~~vv~y~g~~ 368 (1018)
+ ++++++..|..
T Consensus 321 ~~~~~~~~~kG~~ 333 (850)
T TIGR01407 321 NFKINAALIKGKS 333 (850)
T ss_pred CCCceEEEEEcch
Confidence 3 47788777754
No 137
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.07 E-value=8.6e-09 Score=113.20 Aligned_cols=319 Identities=15% Similarity=0.176 Sum_probs=197.7
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCeEEEEec
Q 001750 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVG 366 (1018)
Q Consensus 288 ~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv~y~g 366 (1018)
|.|..+++-+. ..+..+.+++.+|.||++.-- |-.|+.. +-++||.|+ .++....+-+.+.- +++-.+..
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCyQ--LPaL~~~--gITIV~SPLiALIkDQiDHL~~LK--Vp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCYQ--LPALVHG--GITIVISPLIALIKDQIDHLKRLK--VPCESLNS 93 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhhh--chHHHhC--CeEEEehHHHHHHHHHHHHHHhcC--CchhHhcc
Confidence 57888887653 567899999999999997531 1122223 367888886 44444555555432 11111111
Q ss_pred --ChHHHH-HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--c---cc-cCCcceEEEEccc
Q 001750 367 --TSQARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--A---SL-KPIKWQCMIVDEG 437 (1018)
Q Consensus 367 --~~~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~--~---~l-~~i~w~~lIvDEa 437 (1018)
+...|. ++-+.+ .......++-+|+|+...+. . .| ..-...+++||||
T Consensus 94 KlSt~ER~ri~~DL~-----------------------~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLA-----------------------KEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred hhhHHHHHHHHHHHH-----------------------hcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 111222 222211 11233446778888875541 1 12 2224579999999
Q ss_pred ccccCccc------HHHHHHHh-cccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHH-HhchhhHHHHHHHH
Q 001750 438 HRLKNKDS------KLFSSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE-FKDINQEEQISRLH 509 (1018)
Q Consensus 438 HrlKn~~s------~~~~~l~~-l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~-~~~~~~~~~~~~L~ 509 (1018)
|-....+. ...-+|++ +..---+.||||.-..--+|+|..|++-.|-..-.-..|... |.++
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~---------- 220 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN---------- 220 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH----------
Confidence 98743221 12222222 223345789999876777888888887776432222222211 1110
Q ss_pred HHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCC
Q 001750 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1018)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~ 589 (1018)
.|+..++.-+..| ..--++++..|--+...
T Consensus 221 -------------------------------------~~K~~I~D~~~~L-------------aDF~~~~LG~~~~~~~~ 250 (641)
T KOG0352|consen 221 -------------------------------------HMKSFITDCLTVL-------------ADFSSSNLGKHEKASQN 250 (641)
T ss_pred -------------------------------------HHHHHhhhHhHhH-------------HHHHHHhcCChhhhhcC
Confidence 1111111111111 11122332222111100
Q ss_pred CCCccccHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHH
Q 001750 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1018)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~ 669 (1018)
. +....--||||......+.+.-.|...|++..-++.+....+|..+-+.
T Consensus 251 ~------------------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~ 300 (641)
T KOG0352|consen 251 K------------------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEK 300 (641)
T ss_pred C------------------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHH
Confidence 0 0011256999999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEE
Q 001750 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1018)
Q Consensus 670 Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyr 731 (1018)
+-+++.. ++++|-+.|.|++=+.+..||+.+++-|-.-|-|--|||+|-|-..-+..|+
T Consensus 301 WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 301 WMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred HhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 9776555 7899999999999999999999999999999999999999999887777765
No 138
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.98 E-value=4.1e-09 Score=114.35 Aligned_cols=238 Identities=20% Similarity=0.240 Sum_probs=144.9
Q ss_pred cCCC-CCCCCCChhHHHHHHHHHHHhhc------CCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC-CccHHH
Q 001750 276 HSPE-FLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRN 347 (1018)
Q Consensus 276 ~~P~-~~~~~~L~~yQ~egv~wl~~~~~------~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~~ 347 (1018)
..|. .+..+.|-+-|+|+|-+...... .+.+.+|.|.+|.||.-|..++|..-...+..+.|.|.. ..+...
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD 106 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH
Confidence 3444 34568899999999988866655 467899999999999999999988776666655555555 566666
Q ss_pred HHHHHHHHcCC-CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc-----
Q 001750 348 WEREFATWAPQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----- 421 (1018)
Q Consensus 348 W~~E~~~~~p~-~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~----- 421 (1018)
-++.+....-. +.+..+.. + + . ......+..|+.+||.++....
T Consensus 107 a~RDl~DIG~~~i~v~~l~~------------~--~----------~------~~~~~~~~GvlF~TYs~L~~~~~~~~~ 156 (303)
T PF13872_consen 107 AERDLRDIGADNIPVHPLNK------------F--K----------Y------GDIIRLKEGVLFSTYSTLISESQSGGK 156 (303)
T ss_pred HHHHHHHhCCCcccceechh------------h--c----------c------CcCCCCCCCccchhHHHHHhHHhccCC
Confidence 66666654311 11211111 0 0 0 0012346679999999997652
Q ss_pred --ccccCC-cc------eEEEEcccccccCccc------HHHHHHHhc----ccccEEEEecCCCCCCHHHHH--HHHHh
Q 001750 422 --ASLKPI-KW------QCMIVDEGHRLKNKDS------KLFSSLKQY----STRHRVLLTGTPLQNNLDELF--MLMHF 480 (1018)
Q Consensus 422 --~~l~~i-~w------~~lIvDEaHrlKn~~s------~~~~~l~~l----~~~~rllLTgTPlqN~~~EL~--~Ll~f 480 (1018)
..|..+ .| .+||+||||..||..+ +...++..+ ...+.+..|||.... +..|- .-|.+
T Consensus 157 ~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGL 235 (303)
T PF13872_consen 157 YRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGL 235 (303)
T ss_pred ccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceeeeeeeccc
Confidence 223322 34 4899999999999755 555665544 345788999998632 22221 11111
Q ss_pred hcC-CCCCChHHHHHHHhchhhHHHHHHHHHHh--hhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHH
Q 001750 481 LDA-GKFGSLEEFQEEFKDINQEEQISRLHRML--APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 550 (1018)
Q Consensus 481 L~p-~~~~~~~~F~~~~~~~~~~~~~~~L~~~L--~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~ 550 (1018)
-.+ ..|.+..+|.+....-.. ...+-+...| .-.+++|.. ++-.....++.++|++.|.++|+.
T Consensus 236 WG~gtpf~~~~~f~~a~~~gGv-~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 236 WGPGTPFPDFDDFLEAMEKGGV-GAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred cCCCCCCCCHHHHHHHHHhcCc-hHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 111 246777888776653211 1111111111 112333322 345567889999999999999964
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.90 E-value=8.5e-08 Score=116.89 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCC-ChHHHHHHHHHhccCCCCceEEEeec
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKV-GGAERQIRIDRFNAKNSSRFCFLLST 684 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~-~~~~Rq~~i~~Fn~~~s~~~v~Llst 684 (1018)
...|...+.+-+....+.|..|||-+..+..-+.|...|...|+++..+.... ..+.-.++|.. ++..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 35688888888888899999999999999999999999999999999999974 33445566665 33334 479999
Q ss_pred ccccccccCC
Q 001750 685 RAGGLGINLA 694 (1018)
Q Consensus 685 ragg~GINL~ 694 (1018)
..+|.|.|+.
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999996653
No 140
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.86 E-value=3e-07 Score=111.39 Aligned_cols=126 Identities=18% Similarity=0.264 Sum_probs=89.5
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH-HHHHHHHHHHc-----CC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWA-----PQ 358 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~~W~~E~~~~~-----p~ 358 (1018)
.+...|.- |.... -.|.+.-+..++|+|||.-.+....++...+ ++.+||+|+.+| .|-..-+++++ ..
T Consensus 82 ~~ws~QR~---WakR~-~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~ 156 (1187)
T COG1110 82 RPWSAQRV---WAKRL-VRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSLD 156 (1187)
T ss_pred CchHHHHH---HHHHH-HcCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCcc
Confidence 45567765 65444 4455555556999999977665555555444 699999997665 77788888887 33
Q ss_pred CeEEEEecChHHHH--HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcc
Q 001750 359 MNVVMYVGTSQARN--IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~--~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDE 436 (1018)
..++ ||+.-..++ .+.+ .-....|||+|||-..+.+....|.+.+|++++||.
T Consensus 157 ~~~~-yh~~l~~~ekee~le------------------------~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 157 VLVV-YHSALPTKEKEEALE------------------------RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred eeee-eccccchHHHHHHHH------------------------HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEcc
Confidence 4445 888733322 1111 012357999999999999999999999999999999
Q ss_pred cccc
Q 001750 437 GHRL 440 (1018)
Q Consensus 437 aHrl 440 (1018)
+..+
T Consensus 212 VDA~ 215 (1187)
T COG1110 212 VDAI 215 (1187)
T ss_pred HHHH
Confidence 8764
No 141
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.82 E-value=4.4e-07 Score=110.42 Aligned_cols=371 Identities=18% Similarity=0.183 Sum_probs=200.3
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC-CccHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~~W~~E~~~~~p~~~vv 362 (1018)
..|-+-|..+++-+..........+|.--+|.|||-.-+.++...+..+ +-+||+|| -++.+|-...|+.-++ .++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG-AKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhC-CChh
Confidence 4688899999998876653456789999999999999888888887776 58999999 5888998888888774 8888
Q ss_pred EEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccc--
Q 001750 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL-- 440 (1018)
Q Consensus 363 ~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrl-- 440 (1018)
++|+.-..........- .......|||-|...+-.-.. +-.+|||||=|.-
T Consensus 275 vlHS~Ls~~er~~~W~~----------------------~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sY 327 (730)
T COG1198 275 VLHSGLSPGERYRVWRR----------------------ARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSY 327 (730)
T ss_pred hhcccCChHHHHHHHHH----------------------HhcCCceEEEEechhhcCchh-----hccEEEEeccccccc
Confidence 88876544432222100 012456688888776632222 3468999999974
Q ss_pred cCcccHHHH-----HHH-hcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhchhhHHHHHHHHHHhhh
Q 001750 441 KNKDSKLFS-----SLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1018)
Q Consensus 441 Kn~~s~~~~-----~l~-~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1018)
|..++-.|. .++ ....--.+|-||||- .+.+...-. . .
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS---------------------LES~~~~~~------------g---~ 371 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATPS---------------------LESYANAES------------G---K 371 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC---------------------HHHHHhhhc------------C---c
Confidence 333322221 111 122345788899992 222211100 0 0
Q ss_pred HHHHHHHhhHh-hcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcCCc-----chhHHHHHHHHHHhhCcccccCC
Q 001750 515 HLLRRVKKDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA-----QISLINVVMELRKLCCHPYMLEG 588 (1018)
Q Consensus 515 ~~lRR~k~dv~-~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~-----~~~l~~~l~~Lrk~c~hP~l~~~ 588 (1018)
+.+-+++.-.. ..+|......+.-+....-..+-..+++...+.+.++... ...+...+ +.+-|.|..-.+.
T Consensus 372 y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l--~C~~Cg~v~~Cp~ 449 (730)
T COG1198 372 YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLL--LCRDCGYIAECPN 449 (730)
T ss_pred eEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCcccee--ecccCCCcccCCC
Confidence 00001111111 1233322222111111110001122222222223222110 00000011 2334444433322
Q ss_pred CCCCccccHHHHHHHHhhhhHHHH-----HHHHHHHHHHhCCeEEEEech--hhHHHHHHHHHhhCCCcEEEEeCCCChH
Q 001750 589 VEPDIEDTNESFKQLLESSGKLQL-----LDKMMVKLKEQGHRVLIYSQF--QHMLDLLEDYLTFKKWQYERIDGKVGGA 661 (1018)
Q Consensus 589 ~~~~~~~~~~~~~~li~~S~Kl~~-----L~klL~~l~~~g~kvLIFsq~--~~~ldiL~~~L~~~g~~~~rldG~~~~~ 661 (1018)
-.....-.. ..+++.- -..+-....+=|...|++.-. .+..+.|..++ -+.++.|+|+.++..
T Consensus 450 Cd~~lt~H~--------~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F--P~~rv~r~d~Dtt~~ 519 (730)
T COG1198 450 CDSPLTLHK--------ATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF--PGARIIRIDSDTTRR 519 (730)
T ss_pred CCcceEEec--------CCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC--CCCcEEEEccccccc
Confidence 111110000 0000000 000000001113345555432 22333444444 378999999998764
Q ss_pred H--HHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCC------------CcchHHHHHHHHHhhCCCCcE
Q 001750 662 E--RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------------NPHADLQAMARAHRLGQTNKV 727 (1018)
Q Consensus 662 ~--Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dw------------Np~~~~Qa~gR~hRiGQ~k~V 727 (1018)
. -+.+++.|.++..+ |||.|....-|.|++....|.++|.|- ..+...|..|||+|-+-...|
T Consensus 520 k~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~V 596 (730)
T COG1198 520 KGALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEV 596 (730)
T ss_pred hhhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeE
Confidence 3 46789999876665 899999999999999999999988762 234578999999998777777
Q ss_pred EEEEEee
Q 001750 728 MIFRLIT 734 (1018)
Q Consensus 728 ~Iyrlvt 734 (1018)
.|--.-.
T Consensus 597 vIQT~~P 603 (730)
T COG1198 597 VIQTYNP 603 (730)
T ss_pred EEEeCCC
Confidence 6544433
No 142
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.81 E-value=1.4e-07 Score=116.93 Aligned_cols=150 Identities=19% Similarity=0.292 Sum_probs=95.5
Q ss_pred hhhhHHHHHHHHHHHHHHh---------CCeEEEEechhhHHHHHHHHHhhCCC-----cEE--------EEeCCCCh--
Q 001750 605 ESSGKLQLLDKMMVKLKEQ---------GHRVLIYSQFQHMLDLLEDYLTFKKW-----QYE--------RIDGKVGG-- 660 (1018)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~---------g~kvLIFsq~~~~ldiL~~~L~~~g~-----~~~--------rldG~~~~-- 660 (1018)
+..+|+..|.++|..+... +.+|||||++.++...|.++|...++ ++. ...|..+.
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~ 346 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLA 346 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4789999999999887654 46899999999999999999865222 111 00011100
Q ss_pred ----------------------------------HHHHHHHHHhccCCCC--ce----EEE-------------------
Q 001750 661 ----------------------------------AERQIRIDRFNAKNSS--RF----CFL------------------- 681 (1018)
Q Consensus 661 ----------------------------------~~Rq~~i~~Fn~~~s~--~~----v~L------------------- 681 (1018)
..-+..+.+|+.++.. .. ..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (814)
T TIGR00596 347 KEVQSQDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEVAVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAAN 426 (814)
T ss_pred HhhhhccccccccccccccccccccccccccccccchhHHHhhhcccccccccccchhhhhhhhhhhhcccccccccccc
Confidence 0012246677543322 00 011
Q ss_pred ----eecccccccccCCC----------------------C----------CEEEEEcCCCCcchHHHHHHHHHhhCCCC
Q 001750 682 ----LSTRAGGLGINLAT----------------------A----------DTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1018)
Q Consensus 682 ----lstragg~GINL~~----------------------a----------d~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k 725 (1018)
++|..+.+|++... + +.||+|||+-....-+|.. |++|.|.
T Consensus 427 ~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvy-ra~r~~r-- 503 (814)
T TIGR00596 427 DSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVY-KASRPLR-- 503 (814)
T ss_pred ccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHH-HccCCCC--
Confidence 45666778888887 4 8999999986555555522 3444443
Q ss_pred cEEEEEEeeCCCHHHHHHH--HHHHHHHHHHHHh
Q 001750 726 KVMIFRLITRGSIEERMMQ--MTKKKMVLEHLVV 757 (1018)
Q Consensus 726 ~V~Iyrlvt~~TvEe~i~~--~~~~K~~l~~~v~ 757 (1018)
++.||.|++.+|+||.-+- +.+.|.+...++-
T Consensus 504 ~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIr 537 (814)
T TIGR00596 504 PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIR 537 (814)
T ss_pred CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999997654 4455555555553
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=3.5e-07 Score=111.36 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCC-CChHHHHHHHHHhccCCCCceEEEeec
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST 684 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~-~~~~~Rq~~i~~Fn~~~s~~~v~Llst 684 (1018)
...|+..+.+-+..+.+.|..|||-+..+..-+.|...|...|+++..++.. ...+.-.++|.. ++..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 4578889988888999999999999999999999999999999999999997 343444556665 34444 468999
Q ss_pred ccccccccCC
Q 001750 685 RAGGLGINLA 694 (1018)
Q Consensus 685 ragg~GINL~ 694 (1018)
..+|.|-++.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999996654
No 144
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.81 E-value=4.1e-08 Score=117.24 Aligned_cols=145 Identities=19% Similarity=0.315 Sum_probs=100.9
Q ss_pred CCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHH-HHHHHHHHcCC
Q 001750 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WEREFATWAPQ 358 (1018)
Q Consensus 280 ~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~-W~~E~~~~~p~ 358 (1018)
..-+.+|-.+|.+++--| ..|.++++|.-+..|||+.|=..++.. ..+..+.+.-.|...|+| =-++|+.-+.+
T Consensus 292 ~~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred hhCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhccc
Confidence 334568999999998655 889999999999999999975444322 223348888899766655 55778766656
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh----ccccccCCcceEEEE
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIV 434 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~----d~~~l~~i~w~~lIv 434 (1018)
.. .++|+..- ......+|+|-|+++. ....++.+.| ||+
T Consensus 367 vg--LlTGDvqi---------------------------------nPeAsCLIMTTEILRsMLYrgadliRDvE~--VIF 409 (1248)
T KOG0947|consen 367 VG--LLTGDVQI---------------------------------NPEASCLIMTTEILRSMLYRGADLIRDVEF--VIF 409 (1248)
T ss_pred cc--eeecceee---------------------------------CCCcceEeehHHHHHHHHhcccchhhccce--EEE
Confidence 55 56666432 2456789999999865 2445666655 999
Q ss_pred cccccccCcc-cHHHHHHHhccccc--EEEEecCC
Q 001750 435 DEGHRLKNKD-SKLFSSLKQYSTRH--RVLLTGTP 466 (1018)
Q Consensus 435 DEaHrlKn~~-s~~~~~l~~l~~~~--rllLTgTP 466 (1018)
||+|.+-+.. .-.+..+.-+-.+| .++||||-
T Consensus 410 DEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 410 DEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred eeeeecccccccccceeeeeeccccceEEEEeccC
Confidence 9999985532 33444444444444 58999993
No 145
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.77 E-value=7.8e-07 Score=109.48 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+.++.+-+..+.+.|..|||-+.++..-++|...|...|+++..|+.... +.-.++|.. ++..+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~--AG~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAE--AGQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHh--cCCCC--cEEEecc
Confidence 457999999999999999999999999999999999999999999999988643 333445544 23334 4689999
Q ss_pred cccccccCC--------CCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEE
Q 001750 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1018)
Q Consensus 686 agg~GINL~--------~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iy 730 (1018)
.+|.|.++. +.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998876 335789889999999999999999999986554433
No 146
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.76 E-value=1.9e-09 Score=111.24 Aligned_cols=50 Identities=48% Similarity=1.133 Sum_probs=45.5
Q ss_pred ccccccccccCCC---eEecCCCCccccccccCCCCCCCCCCCCCccccCCCC
Q 001750 50 KDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1018)
Q Consensus 50 ~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1018)
.+..|.+|+.+.+ ||+||.|+|+|||+||.|||..+|.|.|.|..|....
T Consensus 280 eck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 280 ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 5788999998654 9999999999999999999999999999999998654
No 147
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.74 E-value=2.7e-09 Score=87.62 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=42.0
Q ss_pred hhhhhhhhccCCCcc---eeeeeeccccccccccccCCCcCcc-HHHHHHHHH
Q 001750 193 TVDRILACRGEDDEK---EYLVKYKELSYDECYWEYESDISAF-QPEIERFIK 241 (1018)
Q Consensus 193 ~verIi~~~~~~~~~---~ylVKW~~L~Y~~~tWE~~~~~~~~-~~~i~~~~~ 241 (1018)
+|+|||+++...+.. +|||||+|+||++||||.+..+... +..|++|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 589999999655555 9999999999999999999888654 777999975
No 148
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.74 E-value=1.6e-07 Score=119.68 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=89.6
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcCCCC-ceEEEeC-CccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhc
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~-p~LIV~P-~s~l~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~ 380 (1018)
.+.+|++-+-+|+|||++++-+...+.....- .+++||- ..+-.|-..+|..+........ ...+...+++.-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l-- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELL-- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHH--
Confidence 45689999999999999998877777665333 5666677 4566899999998875443332 222333332210
Q ss_pred CCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc----ccCCcceEEEEcccccccCcccHHHHHHHh-cc
Q 001750 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQ-YS 455 (1018)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~----l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~-l~ 455 (1018)
....-.|+|||-+.+...... ...-+.-+||+|||||- ....+.+.++. +.
T Consensus 347 ----------------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~ 402 (962)
T COG0610 347 ----------------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALK 402 (962)
T ss_pred ----------------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhc
Confidence 001335999998888654321 22345668999999984 33444444433 34
Q ss_pred cccEEEEecCCCCCC
Q 001750 456 TRHRVLLTGTPLQNN 470 (1018)
Q Consensus 456 ~~~rllLTgTPlqN~ 470 (1018)
...-++.||||+...
T Consensus 403 ~a~~~gFTGTPi~~~ 417 (962)
T COG0610 403 KAIFIGFTGTPIFKE 417 (962)
T ss_pred cceEEEeeCCccccc
Confidence 467799999997544
No 149
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.73 E-value=1.3e-07 Score=117.47 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=106.5
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCC-
Q 001750 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM- 359 (1018)
Q Consensus 282 ~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~- 359 (1018)
-+.+|-++|.+++.-| ..+.+++++..+|.|||+.+-.+++.-...+. .+....|. ++-.|=.++|..-+.+.
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 4578999999998766 89999999999999999999777766555543 48899995 55556666665444322
Q ss_pred -eEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh----ccccccCCcceEEEE
Q 001750 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIV 434 (1018)
Q Consensus 360 -~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~----d~~~l~~i~w~~lIv 434 (1018)
-|-+++|+.. -.....++|+|-|.++. ....+..+. .||+
T Consensus 191 ~~vGL~TGDv~---------------------------------IN~~A~clvMTTEILRnMlyrg~~~~~~i~--~ViF 235 (1041)
T COG4581 191 DMVGLMTGDVS---------------------------------INPDAPCLVMTTEILRNMLYRGSESLRDIE--WVVF 235 (1041)
T ss_pred hhccceeccee---------------------------------eCCCCceEEeeHHHHHHHhccCcccccccc--eEEE
Confidence 2234444432 12455678888788864 234455555 4999
Q ss_pred cccccccCcc-cHHHHHHHhcccc--cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhc
Q 001750 435 DEGHRLKNKD-SKLFSSLKQYSTR--HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1018)
Q Consensus 435 DEaHrlKn~~-s~~~~~l~~l~~~--~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~ 498 (1018)
||.|.+.... .-.+..+.-+-.+ ..++||||- ++..+|.+++..
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 9999996543 3344444333333 679999994 466777777753
No 150
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=2.2e-06 Score=107.23 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhc-CC-CCceEEEeCC-ccHHHHHHHHHH
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFAT 354 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~-~~-~~p~LIV~P~-s~l~~W~~E~~~ 354 (1018)
..+||.|.+.+.-+......+++++|-.++|+|||+.+|+....... .+ ..++++.+.+ +.+.|-.+|+++
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 34799999999999999999999999999999999998876655443 22 2356666664 677899999988
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.63 E-value=8.6e-06 Score=102.76 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccc
Q 001750 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGI 691 (1018)
Q Consensus 612 ~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GI 691 (1018)
.+.+.|..+...+.++||+.....++..+.+.|....+.. ...|... .|.+++++|+..+.. +|+.|.+..+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 3444444445567789999888899998888887655444 4555432 356789999874333 789999999999
Q ss_pred cCC--CCCEEEEEcCCC
Q 001750 692 NLA--TADTVIIYDSDW 706 (1018)
Q Consensus 692 NL~--~ad~VIi~D~dw 706 (1018)
|++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 997 356677877554
No 152
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.62 E-value=5.9e-06 Score=97.14 Aligned_cols=242 Identities=18% Similarity=0.244 Sum_probs=136.3
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHhhc------CCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEE-eCCccHHHH
Q 001750 276 HSPEFLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV-APLSTLRNW 348 (1018)
Q Consensus 276 ~~P~~~~~~~L~~yQ~egv~wl~~~~~------~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV-~P~s~l~~W 348 (1018)
..|. +..+-|...|+|+|-|...... ..-|.+|.|..|.||-.+...+|..-+-.+.++.|.+ |-..+-..-
T Consensus 256 alP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 256 ALPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred eccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccch
Confidence 3454 5567899999999988754432 2346799999999997776666654444555566655 445555556
Q ss_pred HHHHHHHc-CCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-----
Q 001750 349 EREFATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----- 422 (1018)
Q Consensus 349 ~~E~~~~~-p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~----- 422 (1018)
++.+.... +.+.|..+..- +... +........+-.|++.||..+.-...
T Consensus 335 ERDL~DigA~~I~V~alnK~------------------------KYak-Iss~en~n~krGViFaTYtaLIGEs~~~~~k 389 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKF------------------------KYAK-ISSKENTNTKRGVIFATYTALIGESQGKGGK 389 (1300)
T ss_pred hhchhhcCCCCccceehhhc------------------------cccc-ccccccCCccceeEEEeeHhhhhhccccCch
Confidence 66666543 33333322110 0000 01111234566799999999864422
Q ss_pred ---cccC-Ccc------eEEEEcccccccC-------cccHHHHHHHhcc----cccEEEEecCCCCCCHHHHHHHHHhh
Q 001750 423 ---SLKP-IKW------QCMIVDEGHRLKN-------KDSKLFSSLKQYS----TRHRVLLTGTPLQNNLDELFMLMHFL 481 (1018)
Q Consensus 423 ---~l~~-i~w------~~lIvDEaHrlKn-------~~s~~~~~l~~l~----~~~rllLTgTPlqN~~~EL~~Ll~fL 481 (1018)
.|+. +.| .+||+||||+.|| ..++..+.+..++ ..+.+..|||-.. |=-++..+.
T Consensus 390 yrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~ 465 (1300)
T KOG1513|consen 390 YRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMV 465 (1300)
T ss_pred HHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----Ccchhhhhh
Confidence 2221 244 5899999999998 3456666665553 4577888988532 222233333
Q ss_pred cCC------CCCChHHHHHHHhch--hhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHH
Q 001750 482 DAG------KFGSLEEFQEEFKDI--NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (1018)
Q Consensus 482 ~p~------~~~~~~~F~~~~~~~--~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~ 553 (1018)
..+ .|+.+.+|......- ...+.+.-=.++-.-|+-|.+ .+......|-.|+|+++-++.|.....
T Consensus 466 RLGlWGegtaf~eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQL------SFkgVsFrieEv~ls~eF~k~Yn~a~~ 539 (1300)
T KOG1513|consen 466 RLGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQL------SFKGVSFRIEEVPLSKEFRKVYNRAAE 539 (1300)
T ss_pred hhccccCCCcCccHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhhc------cccCceEEEEecccCHHHHHHHHHHHH
Confidence 333 355666665544211 011111111111111222221 344556788899999999999986543
No 153
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.60 E-value=1.2e-08 Score=117.93 Aligned_cols=49 Identities=45% Similarity=1.065 Sum_probs=44.0
Q ss_pred cccccccccCCCe---EecCCCCccccccccCCCC--CCCCCCCCCccccCCCC
Q 001750 51 DDSCQACGESENL---MSCDTCTYAYHAKCLVPPL--KAPPSGSWRCPECVSPL 99 (1018)
Q Consensus 51 ~~~C~~C~~~~~l---~~C~~C~~~~H~~Cl~p~l--~~~p~~~W~C~~C~~~~ 99 (1018)
.++|..|++.|.. +|||+|+++||+.||.||+ ..+|.|.|+|++|....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 4599999999876 9999999999999999994 67999999999998643
No 154
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.59 E-value=1e-06 Score=91.23 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=42.8
Q ss_pred EeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCC
Q 001750 681 LLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1018)
Q Consensus 681 Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k 725 (1018)
|++|...|.|+++...+.||.||.+-.+..|+.+.|||+|.|.+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 788999999999999999999999999999999999999999754
No 155
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.58 E-value=1e-05 Score=103.76 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHH--HHHHH---HH
Q 001750 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN--WEREF---AT 354 (1018)
Q Consensus 280 ~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~--W~~E~---~~ 354 (1018)
.+++.+.||-|.+-++.+...+..+..+++-..+|+|||+.-+.-+........+|++|.+++..+.+ +.+++ .+
T Consensus 252 ~~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 252 AMPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 44567899999999998888888888888999999999988755444333334468999999766644 34443 44
Q ss_pred HcC-CCeEEEEecChH
Q 001750 355 WAP-QMNVVMYVGTSQ 369 (1018)
Q Consensus 355 ~~p-~~~vv~y~g~~~ 369 (1018)
.+| ++++++..|...
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 443 577777776443
No 156
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.54 E-value=1.3e-05 Score=96.61 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=108.2
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC-CCCceEEEeCC-ccHHHHHHHHHH-H-cCCCeE
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFAT-W-APQMNV 361 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~-~~~p~LIV~P~-s~l~~W~~E~~~-~-~p~~~v 361 (1018)
.-.+|.+-+. ....+..++|...+-.|||...--++...++. ..+-++.|+|. +++.|-..++.. + ++.++-
T Consensus 512 Pd~WQ~elLD----svDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 512 PDEWQRELLD----SVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CcHHHHHHhh----hhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 3458888654 44888999999999999999988888776665 45689999995 666776666543 2 222221
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc----cccC-CcceEEEEcc
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKP-IKWQCMIVDE 436 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~----~l~~-i~w~~lIvDE 436 (1018)
. ..-.-...++|. .....++|+||-++.+..-.- ...- -+..++|+||
T Consensus 588 g----~sl~g~ltqEYs-----------------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDE 640 (1330)
T KOG0949|consen 588 G----VSLLGDLTQEYS-----------------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDE 640 (1330)
T ss_pred c----hhhHhhhhHHhc-----------------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEech
Confidence 1 111111222221 123578899999998754211 1111 1457999999
Q ss_pred cccccCc-ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHH
Q 001750 437 GHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1018)
Q Consensus 437 aHrlKn~-~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~ 479 (1018)
+|.+.|. .+.+...+..+...-.|.|||| ++|+..+..-++
T Consensus 641 VH~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 641 VHLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hhhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 9999875 5677777777777788999999 588888777666
No 157
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.53 E-value=1e-05 Score=100.90 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=76.0
Q ss_pred HHHhCCeEEEEechhhHHHHHHHHHhhCCCc-EEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCC--C
Q 001750 620 LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--A 696 (1018)
Q Consensus 620 l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~-~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~--a 696 (1018)
+...+.++|||...-.++..+.+.|...... .....|..+ +...++.|.+...+ .|++.+....+|||++. +
T Consensus 475 ~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l 549 (654)
T COG1199 475 LKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDAL 549 (654)
T ss_pred HhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCe
Confidence 3344558999999999999999999876653 344444433 34889999876664 48999999999999985 5
Q ss_pred CEEEEEcCCCC-cc-----------------------------hHHHHHHHHHhhCCCCcEE
Q 001750 697 DTVIIYDSDWN-PH-----------------------------ADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 697 d~VIi~D~dwN-p~-----------------------------~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
..|||.-.||= |. ...|++||+.|--+.+-|.
T Consensus 550 ~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 550 RLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 88999877763 22 1369999999955555444
No 158
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.46 E-value=4e-05 Score=92.95 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHH-HHHhcCCCCceEEEeCC-ccHHHHHHHHHHHc-----CCCeEE
Q 001750 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERISPHLVVAPL-STLRNWEREFATWA-----PQMNVV 362 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l-~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~-----p~~~vv 362 (1018)
|.+-+..+...+..+...++-..+|+|||+..+.-+ .++......++||++|+ .+..|+.+++.... ..++++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 777788888888888889999999999998876554 33332334699999996 55578888876554 256677
Q ss_pred EEecC
Q 001750 363 MYVGT 367 (1018)
Q Consensus 363 ~y~g~ 367 (1018)
+..|.
T Consensus 82 ~lkGr 86 (636)
T TIGR03117 82 FFPGS 86 (636)
T ss_pred EEECC
Confidence 76664
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.43 E-value=1e-05 Score=98.06 Aligned_cols=113 Identities=11% Similarity=0.303 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeeccc
Q 001750 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1018)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstra 686 (1018)
+....+...|+..|. .|++|.|||....+.+++++++...+.++..++|..+..+. +.+ ..+-+++=|.+
T Consensus 266 ~~~~tF~~~L~~~L~-~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARLN-AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHHh-CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 445556777777764 68999999999999999999999999999999887765522 222 33457888889
Q ss_pred ccccccCCC--CCEEEEE--cCCCCcch--HHHHHHHHHhhCCCCcEEEE
Q 001750 687 GGLGINLAT--ADTVIIY--DSDWNPHA--DLQAMARAHRLGQTNKVMIF 730 (1018)
Q Consensus 687 gg~GINL~~--ad~VIi~--D~dwNp~~--~~Qa~gR~hRiGQ~k~V~Iy 730 (1018)
...|+++-. .|.|..| .....|.. ..|.+||+..+.. +++.||
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 999998863 4666666 33344554 6899999988874 445555
No 160
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.42 E-value=2.5e-06 Score=106.02 Aligned_cols=142 Identities=19% Similarity=0.313 Sum_probs=90.8
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcC-CCCceEEEeCCccH-HHHHHH---------HHHHcCC--CeEEEEecChH--
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTL-RNWERE---------FATWAPQ--MNVVMYVGTSQ-- 369 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~-~~~p~LIV~P~s~l-~~W~~E---------~~~~~p~--~~vv~y~g~~~-- 369 (1018)
.+..+.++||+|||.+++..|.+|... +...||||||...+ .....- |...+++ +...+|.+.+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 477899999999999999999999776 55699999997554 222222 2222322 34444543321
Q ss_pred -HH----HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--c------cc--CCcce----
Q 001750 370 -AR----NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--S------LK--PIKWQ---- 430 (1018)
Q Consensus 370 -~r----~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~--~------l~--~i~w~---- 430 (1018)
.| ..++.+ . . .........+|+|+|-+++.++.. . +. ..+|+
T Consensus 140 ~gr~~~~~~i~~F--a-~----------------~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~ 200 (986)
T PRK15483 140 SGRKNFPAQLSNF--V-K----------------ASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAA 200 (986)
T ss_pred cccccChHHHHHH--H-h----------------ccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHh
Confidence 11 112221 0 0 000112256899999999976421 1 11 23443
Q ss_pred ---EEEEcccccccCcccHHHHHHHhcccccEEEEecCC
Q 001750 431 ---CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTP 466 (1018)
Q Consensus 431 ---~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTP 466 (1018)
+||+||+|++.. ..+.+.++..+...+.|.-|||-
T Consensus 201 ~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~ 238 (986)
T PRK15483 201 TRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATF 238 (986)
T ss_pred CCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeec
Confidence 899999999965 34577889999999999999996
No 161
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.35 E-value=1.5e-06 Score=101.95 Aligned_cols=139 Identities=20% Similarity=0.318 Sum_probs=92.2
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHH-HHHHHHhcCCCCceEEEeCCccH-HHHHHHHHHHcCCCeE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNV 361 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai-~~l~~l~~~~~~p~LIV~P~s~l-~~W~~E~~~~~p~~~v 361 (1018)
.+|-|+|..++.- ..++.++++..-+..|||+.|= |++..|... .+++.-.|-..| .|=.+|+..=+.+ |
T Consensus 128 F~LDpFQ~~aI~C----idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k--QRVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKC----IDRGESVLVSAHTSAGKTVVAEYAIAMSLREK--QRVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred cccCchHhhhhhh----hcCCceEEEEeecCCCcchHHHHHHHHHHHhc--CeEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 5799999999864 4899999999999999999984 444555443 378888895555 5556777654433 2
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh----ccccccCCcceEEEEccc
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIVDEG 437 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~----d~~~l~~i~w~~lIvDEa 437 (1018)
-..+|+-. -.+....+|+|-++++. .....+.+.| ||+||.
T Consensus 200 GLMTGDVT---------------------------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEI 244 (1041)
T KOG0948|consen 200 GLMTGDVT---------------------------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEI 244 (1041)
T ss_pred ceeeccee---------------------------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeee
Confidence 23334321 12345678999998864 3556677777 999999
Q ss_pred ccccCcccH-HHHH-HHhcc-cccEEEEecC
Q 001750 438 HRLKNKDSK-LFSS-LKQYS-TRHRVLLTGT 465 (1018)
Q Consensus 438 HrlKn~~s~-~~~~-l~~l~-~~~rllLTgT 465 (1018)
|.++....- .+.. +.-+. .-+-+.||||
T Consensus 245 HYMRDkERGVVWEETIIllP~~vr~VFLSAT 275 (1041)
T KOG0948|consen 245 HYMRDKERGVVWEETIILLPDNVRFVFLSAT 275 (1041)
T ss_pred hhccccccceeeeeeEEeccccceEEEEecc
Confidence 999764321 2211 11222 3355789999
No 162
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.35 E-value=2.9e-05 Score=95.96 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHh--CCeEEEEechhhHHHHHHHHHh----hC---CCcEEEEeCCCChHHHHHHHHHhccCCCCce
Q 001750 608 GKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLT----FK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (1018)
Q Consensus 608 ~Kl~~L~klL~~l~~~--g~kvLIFsq~~~~ldiL~~~L~----~~---g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~ 678 (1018)
-...++..++..+.+. ...+|||-.-..-+..+.+.|. .. .+-...++++++..+.+.+ |+.+..+..
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 4556677777766554 3589999988776666666664 22 2556778999998777665 777788777
Q ss_pred EEEeecccccccccCCCCCEEEE--------EcCCC----------CcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHH
Q 001750 679 CFLLSTRAGGLGINLATADTVII--------YDSDW----------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1018)
Q Consensus 679 v~Llstragg~GINL~~ad~VIi--------~D~dw----------Np~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe 740 (1018)
-++++|..+..+|++..+-.||= ||+.- +-++-.||.|||+| ..+-.+|+|+++.-.+-
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 78999999999999998766653 44432 22344577777766 67788999999865544
Q ss_pred H
Q 001750 741 R 741 (1018)
Q Consensus 741 ~ 741 (1018)
.
T Consensus 549 ~ 549 (924)
T KOG0920|consen 549 L 549 (924)
T ss_pred c
Confidence 3
No 163
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.33 E-value=2.1e-07 Score=76.25 Aligned_cols=48 Identities=42% Similarity=0.664 Sum_probs=40.9
Q ss_pred hhhhhhhccCC--CcceeeeeeccccccccccccCCCcCccHHHHHHHHH
Q 001750 194 VDRILACRGED--DEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1018)
Q Consensus 194 verIi~~~~~~--~~~~ylVKW~~L~Y~~~tWE~~~~~~~~~~~i~~~~~ 241 (1018)
|++||++|... +..+|||||+|++|++||||....+......+++|..
T Consensus 5 ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 5 VEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred EeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 59999999766 7899999999999999999998877655677887763
No 164
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.24 E-value=0.00017 Score=89.89 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhC-CCcEEEEeCCCChHHHHHHHHHhccC-CCCceEEEeecccccc
Q 001750 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAK-NSSRFCFLLSTRAGGL 689 (1018)
Q Consensus 612 ~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~rldG~~~~~~Rq~~i~~Fn~~-~s~~~v~Llstragg~ 689 (1018)
.+.+.|..+...+.++|||.....+++.+.+.|... ++. ....|. ..|.++++.|.+. ..+.-.+|++|.+..+
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~E 597 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAE 597 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccc
Confidence 344444444445556888888888888888888642 333 334553 3577888777532 0011136888899999
Q ss_pred cccCCC--CCEEEEEcCCC
Q 001750 690 GINLAT--ADTVIIYDSDW 706 (1018)
Q Consensus 690 GINL~~--ad~VIi~D~dw 706 (1018)
|||+++ +..|||.-.|+
T Consensus 598 GVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 598 GLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccCCCCceEEEEEEcCCC
Confidence 999984 78999988776
No 165
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.23 E-value=0.00093 Score=83.56 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHh----hcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCC-ceEEEeCC-ccHHHHHHHHHHHc--CC
Q 001750 287 HPYQLEGLNFLRFS----WSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQ 358 (1018)
Q Consensus 287 ~~yQ~egv~wl~~~----~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~-p~LIV~P~-s~l~~W~~E~~~~~--p~ 358 (1018)
+-+|-.+++.+... -..|--++-...||.|||+.-.-+++.|.....+ ++-|..=+ ++.-|--.++++-. .+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 45888888766442 2334457778899999999998889888887776 66655555 44466666666533 34
Q ss_pred CeEEEEecChHHHHHHHHhhhcCC----CCchhhhc-----------cccCcc---------c-cccccccccccEEEcc
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFP----KNPKKVKK-----------KKSGQV---------V-SESKQDRIKFDVLLTS 413 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~----~~~~~~~~-----------~~~~~~---------~-~~~~~~~~~~~VvitT 413 (1018)
-...+..|+...++.....+--.. .+...... ...+.+ . ...........|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 567788899888876532111000 00000000 000000 0 0011122345788999
Q ss_pred HHHHhhcccccc---------CCcceEEEEcccccccCcccHHHHHHHh---cccccEEEEecCCCCCCHHHH
Q 001750 414 YEMINLDSASLK---------PIKWQCMIVDEGHRLKNKDSKLFSSLKQ---YSTRHRVLLTGTPLQNNLDEL 474 (1018)
Q Consensus 414 ye~l~~d~~~l~---------~i~w~~lIvDEaHrlKn~~s~~~~~l~~---l~~~~rllLTgTPlqN~~~EL 474 (1018)
.+.+..-...++ .+-=..|||||+|-+-.........+.. .-....++||||--..-...|
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 888765432222 2223589999999764433322222222 224678999999544333333
No 166
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.18 E-value=6.9e-07 Score=104.10 Aligned_cols=48 Identities=33% Similarity=0.879 Sum_probs=42.2
Q ss_pred cccccccccCC---CeEecCCCCcc-ccccccCCCCCCCCCCCCCccccCCC
Q 001750 51 DDSCQACGESE---NLMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVSP 98 (1018)
Q Consensus 51 ~~~C~~C~~~~---~l~~C~~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1018)
..-|.+|...+ .||+||.|..+ ||++||+|+|-.+|-+.|+|++|...
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 34588888754 39999999999 99999999999999999999999853
No 167
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.17 E-value=0.00024 Score=83.89 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=79.4
Q ss_pred eEEEEechhhHHHHHHHHHhh----CCC----cEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCC
Q 001750 626 RVLIYSQFQHMLDLLEDYLTF----KKW----QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (1018)
Q Consensus 626 kvLIFsq~~~~ldiL~~~L~~----~g~----~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad 697 (1018)
-+|||=.-....+.+.+.|.. .+- -+.-+.|..+.++..++ |...+.+...+++||+.+...|.+.+.-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 688888777666655555533 221 24568899998775554 6655655556899999999999999987
Q ss_pred EEEEEcCC------CCc-----------chHHHHHHHHHhhCCCCcEEEEEEeeCCCHH
Q 001750 698 TVIIYDSD------WNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1018)
Q Consensus 698 ~VIi~D~d------wNp-----------~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvE 739 (1018)
.|| |+. ||| ..-.||..|++|-|-+.+..+|||.++.-++
T Consensus 337 YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 337 YVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred EEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 775 332 444 3556888888888889999999999987663
No 168
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.16 E-value=8.3e-06 Score=79.39 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=71.6
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcC
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 381 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~ 381 (1018)
.++.-.+|-.-.|.|||-..+.-+..-.-....++||++|+-.+ .+|+.+...+..+. ++-..-.+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvv---a~em~~aL~~~~~~-~~t~~~~~---------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVV---AEEMYEALKGLPVR-FHTNARMR---------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHH---HHHHHHHTTTSSEE-EESTTSS-----------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHH---HHHHHHHHhcCCcc-cCceeeec----------
Confidence 46677889999999999987664432222234599999998776 34555554455422 22111100
Q ss_pred CCCchhhhccccCccccccccccccccEEEccHHHHhhc-cccccCCcceEEEEcccccccCcccHHHHHH-Hhcc---c
Q 001750 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPIKWQCMIVDEGHRLKNKDSKLFSSL-KQYS---T 456 (1018)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d-~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l-~~l~---~ 456 (1018)
.....--|-+++|.++... .......+|+++|+||||-. ...|-..... ..+. .
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~ 126 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGE 126 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS
T ss_pred --------------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccC
Confidence 0112334778888887543 22444568999999999963 4444433332 2222 1
Q ss_pred ccEEEEecCC
Q 001750 457 RHRVLLTGTP 466 (1018)
Q Consensus 457 ~~rllLTgTP 466 (1018)
...+++||||
T Consensus 127 ~~~i~mTATP 136 (148)
T PF07652_consen 127 AKVIFMTATP 136 (148)
T ss_dssp -EEEEEESS-
T ss_pred eeEEEEeCCC
Confidence 2578999999
No 169
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.15 E-value=6.7e-07 Score=72.17 Aligned_cols=44 Identities=43% Similarity=1.192 Sum_probs=37.6
Q ss_pred ccccccc---CCCeEecCCCCccccccccCCCCC--CCCCCCCCccccC
Q 001750 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLK--APPSGSWRCPECV 96 (1018)
Q Consensus 53 ~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~l~--~~p~~~W~C~~C~ 96 (1018)
+|.+|+. .+.++.|+.|.+.||+.|+.|+.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4888887 456999999999999999999877 4455699999996
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00041 Score=84.98 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr 685 (1018)
...|+..+.+-+....+.|..|||-+..+..-+.+...|...|++...++..-. .|..-|=.+ ++..+ .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--ccccccc
Confidence 467899999999999999999999999999999999999999999999998765 233322222 33333 4588999
Q ss_pred cccccccCC-CCC----------EEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEE
Q 001750 686 AGGLGINLA-TAD----------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1018)
Q Consensus 686 agg~GINL~-~ad----------~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrl 732 (1018)
.+|+|-++. ..+ +||--.-.=+-..+.|-.||++|.| ..-...|+|
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~l 542 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYL 542 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhh
Confidence 999999986 333 4555555556666789999999999 333444444
No 171
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=98.09 E-value=1.2e-06 Score=71.75 Aligned_cols=48 Identities=38% Similarity=0.644 Sum_probs=41.4
Q ss_pred hhhhhhhc-cCCCcceeeeeeccccccccccccCCCcCccHHHHHHHHH
Q 001750 194 VDRILACR-GEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1018)
Q Consensus 194 verIi~~~-~~~~~~~ylVKW~~L~Y~~~tWE~~~~~~~~~~~i~~~~~ 241 (1018)
|+||++++ ...+..+|||||+|++|.++||+....+..+...+.+|..
T Consensus 4 v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 4 VEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred hheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 89999999 7778899999999999999999988776545777888765
No 172
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.07 E-value=2.3e-05 Score=87.28 Aligned_cols=72 Identities=17% Similarity=0.070 Sum_probs=53.0
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHH-HHhcCCC----CceEEEeCCccH-HHHHHHHHHH
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLSTL-RNWEREFATW 355 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~-~l~~~~~----~p~LIV~P~s~l-~~W~~E~~~~ 355 (1018)
.+.||.|++-++-+...+..++.+|+-.++|+|||+..+..+. ++..... .++++++++... .+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3469999999999988999999999999999999999877654 4343333 277888875433 4444555543
No 173
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.07 E-value=2.3e-05 Score=87.28 Aligned_cols=72 Identities=17% Similarity=0.070 Sum_probs=53.0
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHH-HHhcCCC----CceEEEeCCccH-HHHHHHHHHH
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLSTL-RNWEREFATW 355 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~-~l~~~~~----~p~LIV~P~s~l-~~W~~E~~~~ 355 (1018)
.+.||.|++-++-+...+..++.+|+-.++|+|||+..+..+. ++..... .++++++++... .+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3469999999999988999999999999999999999877654 4343333 277888875433 4444555543
No 174
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.02 E-value=0.00016 Score=88.00 Aligned_cols=168 Identities=19% Similarity=0.185 Sum_probs=95.3
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHH-HHHHHHHHc--CCCeE
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WEREFATWA--PQMNV 361 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~-W~~E~~~~~--p~~~v 361 (1018)
.|+++|.+.+.- .....++|.|.+.+++.|||+.|=.++....-...+..|.+.|--.+.+ =..++..+. -+++|
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~v 300 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPV 300 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcc
Confidence 588888888742 2224789999999999999998744333222223346788888544433 333344443 23455
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccC----CcceEEEEccc
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP----IKWQCMIVDEG 437 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~----i~w~~lIvDEa 437 (1018)
-.|.|.-. |.. ....-+|.|+|.|........|-. -.-.+|||||-
T Consensus 301 e~y~g~~~------------p~~------------------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdEl 350 (1008)
T KOG0950|consen 301 EEYAGRFP------------PEK------------------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDEL 350 (1008)
T ss_pred hhhcccCC------------CCC------------------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeee
Confidence 55553311 110 122446889999988776554422 13468999999
Q ss_pred ccccC--cccHHHHHHHhc----ccc--cEEEEecCCCCCCHHHHHHHH-HhhcCCCC
Q 001750 438 HRLKN--KDSKLFSSLKQY----STR--HRVLLTGTPLQNNLDELFMLM-HFLDAGKF 486 (1018)
Q Consensus 438 HrlKn--~~s~~~~~l~~l----~~~--~rllLTgTPlqN~~~EL~~Ll-~fL~p~~~ 486 (1018)
|-+.. .+..+-..|..+ ... ..++||||-..|. .|-+.| .|+-+..|
T Consensus 351 hmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~f 406 (1008)
T KOG0950|consen 351 HMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTTRF 406 (1008)
T ss_pred eeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheeccc
Confidence 99843 333222222222 122 3699999964443 333333 34444433
No 175
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.02 E-value=9.3e-06 Score=88.27 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=69.6
Q ss_pred HHHHHhccCCCCceEEEeecccccccccCCCC----C----EEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCC
Q 001750 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATA----D----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1018)
Q Consensus 665 ~~i~~Fn~~~s~~~v~Llstragg~GINL~~a----d----~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~ 736 (1018)
...+.|+++... ++|-++|||.||+|++- | .-|+++++|+....+|.+||+||.||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~k~---v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD---VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce---EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456689875432 45557999999999953 1 347899999999999999999999999876555556666
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 001750 737 SIEERMMQMTKKKMVLEHLVV 757 (1018)
Q Consensus 737 TvEe~i~~~~~~K~~l~~~v~ 757 (1018)
..|.+......+|+.--.++.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt 149 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALT 149 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 789999888888876554444
No 176
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.01 E-value=0.00013 Score=85.33 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=65.5
Q ss_pred CCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcC----CCCc-----------chHH
Q 001750 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS----DWNP-----------HADL 712 (1018)
Q Consensus 648 g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~----dwNp-----------~~~~ 712 (1018)
++.+.-|....+.....++ |+....+...++++|..+...|.++..-.||=... .+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 4556666666665544443 66445555567999999999999999888874221 2343 3344
Q ss_pred HHHHHHHhhCCCCcEEEEEEeeCCCHHHHHHH
Q 001750 713 QAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1018)
Q Consensus 713 Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~~ 744 (1018)
||-.|++|.|.+.+-..|||+|+.++...|+.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 56666677777789999999999998887764
No 177
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.96 E-value=2.1e-05 Score=87.11 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=85.3
Q ss_pred CCeEEEEechhhHHHHHHHHHhhC---CCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEE
Q 001750 624 GHRVLIYSQFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1018)
Q Consensus 624 g~kvLIFsq~~~~ldiL~~~L~~~---g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VI 700 (1018)
-.|.||||....--|-|++++..+ .|+.+.++|...+.+|.+-++.|.. ..+.|||+|.+++.||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk---~dvkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK---FDVKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh---cCeEEEEEehhhhccccccCCceEE
Confidence 358999999999999999999765 4688899999999999999999965 3456999999999999999999999
Q ss_pred EEcCCCCcchHHHHHHHHHhh
Q 001750 701 IYDSDWNPHADLQAMARAHRL 721 (1018)
Q Consensus 701 i~D~dwNp~~~~Qa~gR~hRi 721 (1018)
....+-.-++|..|+||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 178
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.94 E-value=4.8e-06 Score=86.42 Aligned_cols=48 Identities=35% Similarity=1.005 Sum_probs=41.5
Q ss_pred cccccccccccccC--CCeEecCC--CCc-cccccccCCCCCCCCCCCCCccccCC
Q 001750 47 IDAKDDSCQACGES--ENLMSCDT--CTY-AYHAKCLVPPLKAPPSGSWRCPECVS 97 (1018)
Q Consensus 47 ~~~~~~~C~~C~~~--~~l~~C~~--C~~-~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1018)
.+++..+|. |+.. |.|+-||. |.+ .||+.|+ .|..+|.|.|+|++|..
T Consensus 217 se~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 217 SEGEELYCF-CQQVSYGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred ccCceeEEE-ecccccccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 345678898 7765 78999995 988 8999999 89999999999999974
No 179
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.00042 Score=86.27 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=80.0
Q ss_pred CCeEEEEechhhHHHHHHHHHhh----CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEE
Q 001750 624 GHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1018)
Q Consensus 624 g~kvLIFsq~~~~ldiL~~~L~~----~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~V 699 (1018)
..-+|||-.-....+-..+.|.. ....++-++|..+.++.+++ |+....++..+++||+.+..+|++...-.|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 44789998888887777777765 45778889999998887764 655455533479999999999999998887
Q ss_pred EEEc----CCCCcchH-----------HHHHHHHHhhCCCCcEEEEEEeeCCCHH
Q 001750 700 IIYD----SDWNPHAD-----------LQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1018)
Q Consensus 700 Ii~D----~dwNp~~~-----------~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvE 739 (1018)
|=-- +-|||..- ..|.-|++|-|-+.+-..|||.+++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 6311 12333332 2344455555557789999999986555
No 181
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.80 E-value=1e-05 Score=78.66 Aligned_cols=28 Identities=46% Similarity=1.066 Sum_probs=26.0
Q ss_pred cccccccCCCCCCCCCCCCCccccCCCC
Q 001750 72 AYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1018)
Q Consensus 72 ~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1018)
+||+.||.|||..+|.|+|+||.|....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 5999999999999999999999999754
No 182
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.77 E-value=2.9e-06 Score=69.58 Aligned_cols=38 Identities=39% Similarity=0.861 Sum_probs=29.9
Q ss_pred hhhhhhhhcCCccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001750 130 VKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1018)
Q Consensus 130 ~~eylVKw~~~Sy~h~~W~~e~~l~~~~~~~~~~~~kl~~f~kk 173 (1018)
..+|||||+|++|.||||+|+..|... +| ..+..|.++
T Consensus 18 ~~~ylVkW~g~~~~~~tWe~~~~l~~~---~~---~li~~f~~r 55 (55)
T PF00385_consen 18 VYEYLVKWKGYPYSENTWEPEENLKNC---FP---ELIEEFEKR 55 (55)
T ss_dssp EEEEEEEETTSSGGGEEEEEGGGCSSH---CH---HHHHHHHHH
T ss_pred cEEEEEEECCCCCCCCeEeeHHHHhHh---hH---HHHHHHhCC
Confidence 369999999999999999999988642 23 347777653
No 183
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.73 E-value=0.00019 Score=76.85 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHHhhcCCCc-eEEEcCCCccHHHHHHHHHHHHh-------cCCCCceEEEeCC-ccHHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLF-------GERISPHLVVAPL-STLRNWEREFAT 354 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~-~ILaDemGlGKTiqai~~l~~l~-------~~~~~p~LIV~P~-s~l~~W~~E~~~ 354 (1018)
+|-+.|.+++..+ ..... +++.-..|+|||.+..+++..+. ....+++||++|+ ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3778999999755 45555 88999999999988888887773 3345599999995 566676666655
No 184
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.66 E-value=1.4e-05 Score=89.24 Aligned_cols=47 Identities=45% Similarity=1.050 Sum_probs=41.3
Q ss_pred ccccccccccCCC---eEecCCCCccccccccCCCCCCCCCCC----CCccccC
Q 001750 50 KDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGS----WRCPECV 96 (1018)
Q Consensus 50 ~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~~----W~C~~C~ 96 (1018)
-...|.+|+...+ |+.||+|...||+.||.|||+.+|... |.|.+|.
T Consensus 543 ~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 543 MNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred cceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 3466999998765 899999999999999999999999754 9999993
No 185
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.65 E-value=1.6e-05 Score=65.03 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=37.4
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCCccccccccchHhHHHHhhcChhHHHHHHhhhh
Q 001750 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (1018)
Q Consensus 101 ~iekIL~wR~~p~~~~~~~~~~~~~~~~~~~eylVKw~~~Sy~h~~W~~e~~l~~~~~~~~~~~~kl~~f~k 172 (1018)
.+++|++.|.... ....+|||||+|++|.||||+|+..|... ..++..|.+
T Consensus 4 ~ve~Il~~r~~~~--------------~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-------~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD--------------GGEYEYLVKWKGYSYSEDTWEPEENLEDC-------KELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC--------------CCcEEEEEEECCCCCccCccccHHHhCch-------HHHHHHHHh
Confidence 3578888764331 12379999999999999999999998642 235777764
No 186
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.57 E-value=2.8e-05 Score=81.33 Aligned_cols=42 Identities=29% Similarity=0.752 Sum_probs=38.2
Q ss_pred ccccccccccC---CCeEecCCCCccccccccCCCCCCCCCCCCCcc
Q 001750 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCP 93 (1018)
Q Consensus 50 ~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~ 93 (1018)
.+..|.+|+.+ .++++||.|+|+||..|+ .|..+|.|.|.|.
T Consensus 313 ~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD 357 (381)
T KOG1512|consen 313 SCELCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICD 357 (381)
T ss_pred ccHhhhccCCcccchheeccccccCCCCcccc--ccccccCccchhh
Confidence 57789999976 459999999999999999 8999999999997
No 187
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.57 E-value=0.00023 Score=81.85 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=77.6
Q ss_pred HhCCeEEEEechhhHHHHHHHHHhhCCCc-EEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEE
Q 001750 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1018)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~-~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VI 700 (1018)
..|.-|+-||.-. +=-+...++..|.. .+.|.|+.+++.|.+.-..||++.+. +.+|++|+|.|.|+||. .+.||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e-~dvlVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNE-CDVLVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCc-cceEEeecccccccccc-eeEEE
Confidence 3588999998642 22234445555555 99999999999999999999986655 45899999999999996 58899
Q ss_pred EEcCC---------CCcchHHHHHHHHHhhCCC
Q 001750 701 IYDSD---------WNPHADLQAMARAHRLGQT 724 (1018)
Q Consensus 701 i~D~d---------wNp~~~~Qa~gR~hRiGQ~ 724 (1018)
+|+.- -...+..|.-|||+|.|.+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 98763 3455678999999999876
No 188
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.51 E-value=0.003 Score=74.17 Aligned_cols=85 Identities=22% Similarity=0.225 Sum_probs=57.9
Q ss_pred CcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCC------CCcc-------------
Q 001750 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD------WNPH------------- 709 (1018)
Q Consensus 649 ~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~d------wNp~------------- 709 (1018)
+-++-|..+.+.+...++ |...+.+...++|+|..+...|.+.+...|| ||. +||.
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 345567788887766655 5544444445789999999999998877765 554 3443
Q ss_pred -hHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHH
Q 001750 710 -ADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1018)
Q Consensus 710 -~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~ 741 (1018)
.-.||.|||+|.| +-..|||.|.-+++..
T Consensus 582 AsA~QRaGRAGRtg---PGKCfRLYt~~aY~~e 611 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG---PGKCFRLYTAWAYEHE 611 (902)
T ss_pred hhhhhhccccCCCC---CCceEEeechhhhhhh
Confidence 3457666666655 6778999997665543
No 189
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.49 E-value=4e-05 Score=84.30 Aligned_cols=47 Identities=30% Similarity=0.806 Sum_probs=39.5
Q ss_pred cccccccc-cccCCCeEecCC--CC-ccccccccCCCCCCCCCCCCCccccCC
Q 001750 49 AKDDSCQA-CGESENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1018)
Q Consensus 49 ~~~~~C~~-C~~~~~l~~C~~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1018)
.+..+|.. |...|+|+-||. |+ ..||+.|+ .|...|.|.||||.|..
T Consensus 217 ~e~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 217 DEPTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKA 267 (274)
T ss_pred CCCEEEEecccccccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhh
Confidence 34456654 445789999998 99 89999999 89999999999999985
No 190
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.41 E-value=0.0045 Score=70.40 Aligned_cols=62 Identities=31% Similarity=0.393 Sum_probs=48.7
Q ss_pred EEEeecccccccccCCCCCEEEEEcCC------CC-----------cchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHH
Q 001750 679 CFLLSTRAGGLGINLATADTVIIYDSD------WN-----------PHADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1018)
Q Consensus 679 v~Llstragg~GINL~~ad~VIi~D~d------wN-----------p~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~ 741 (1018)
.+++||..+...+.+.+.-.|| ||. +| |..-.||..|++|.|.+++-..|+|.|+...+-.
T Consensus 315 kvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~e 392 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKE 392 (699)
T ss_pred eEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhc
Confidence 4789999999988887765554 554 34 5566799999999999999999999998765544
Q ss_pred H
Q 001750 742 M 742 (1018)
Q Consensus 742 i 742 (1018)
+
T Consensus 393 m 393 (699)
T KOG0925|consen 393 M 393 (699)
T ss_pred C
Confidence 3
No 191
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.35 E-value=0.0024 Score=69.78 Aligned_cols=122 Identities=18% Similarity=0.118 Sum_probs=74.6
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH----HHHHHHHHHHcCC
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l----~~W~~E~~~~~p~ 358 (1018)
|..+++-|+-|+--| ..|-|.-..||=|||+++...+ ++..-...++=||+.+..| .+|...|-.++ +
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a-~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPA-ALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHH-HHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHH-HHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 456788888887444 3455999999999999975433 3333333478888888777 45888888888 7
Q ss_pred CeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc---------cccccCCcc
Q 001750 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d---------~~~l~~i~w 429 (1018)
+.+-...+........ .....+|+-+|-..+..| ......-.+
T Consensus 147 lsv~~~~~~~~~~~r~----------------------------~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 147 LSVGIITSDMSSEERR----------------------------EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp --EEEEETTTEHHHHH----------------------------HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred hccccCccccCHHHHH----------------------------HHHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 7777766654321110 123567888877776543 111223467
Q ss_pred eEEEEcccccc
Q 001750 430 QCMIVDEGHRL 440 (1018)
Q Consensus 430 ~~lIvDEaHrl 440 (1018)
+++||||+..+
T Consensus 199 ~~~ivDEvDs~ 209 (266)
T PF07517_consen 199 DFAIVDEVDSI 209 (266)
T ss_dssp SEEEECTHHHH
T ss_pred CEEEEeccceE
Confidence 89999998765
No 192
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00051 Score=81.84 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=49.8
Q ss_pred HHHhccCCCCceEEEeecccccccccCCCCCEEEE--------EcC---------CC-CcchHHHHHHHHHhhCCCCcEE
Q 001750 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII--------YDS---------DW-NPHADLQAMARAHRLGQTNKVM 728 (1018)
Q Consensus 667 i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi--------~D~---------dw-Np~~~~Qa~gR~hRiGQ~k~V~ 728 (1018)
+.-|...+.+....+++|.++...|+++..-+||= ||+ +| +-+.-.||.|||+|+| +-+
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCc
Confidence 34576666666667999999999999999998873 454 23 3445568888888887 677
Q ss_pred EEEEeeC
Q 001750 729 IFRLITR 735 (1018)
Q Consensus 729 Iyrlvt~ 735 (1018)
.|||++.
T Consensus 697 cYRLYSS 703 (1172)
T KOG0926|consen 697 CYRLYSS 703 (1172)
T ss_pred eeehhhh
Confidence 8999865
No 193
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.07 E-value=0.002 Score=77.97 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=41.6
Q ss_pred EEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhC
Q 001750 679 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (1018)
Q Consensus 679 v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiG 722 (1018)
.|+.|--|+-+|.+-+.+=++.=+-+.-|-..-.|-+||..|+-
T Consensus 485 RFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 485 RFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred eeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 48999999999999999999999999999999999999999985
No 194
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.06 E-value=0.0025 Score=73.28 Aligned_cols=133 Identities=17% Similarity=0.227 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHH----HhhCCC----cEEEEeCCCChHHHHHHHHHhccCCCCc
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDY----LTFKKW----QYERIDGKVGGAERQIRIDRFNAKNSSR 677 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~----L~~~g~----~~~rldG~~~~~~Rq~~i~~Fn~~~s~~ 677 (1018)
.+.|+....+++..+...|-|+|-||...+.-+++-.. |..-|- .+..+.|+...++|.++-...- .+.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F---~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF---GGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---CCe
Confidence 56788888889999999999999999988765544332 211111 2334668888888888765542 345
Q ss_pred eEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCCCCcEEEEEEeeCCCHHHHHH
Q 001750 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (1018)
Q Consensus 678 ~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ~k~V~Iyrlvt~~TvEe~i~ 743 (1018)
.+-+++|.|+.+||++...|.|+....+.+-+++.|..|||+|-... ...| +++..+.||..-+
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-SLav-yva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP-SLAV-YVAFLGPVDQYYM 647 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC-ceEE-EEEeccchhhHhh
Confidence 56899999999999999999999999999999999999999996532 2233 3344456666543
No 195
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=97.05 E-value=0.00011 Score=79.64 Aligned_cols=36 Identities=47% Similarity=0.897 Sum_probs=28.6
Q ss_pred hhhhhhhhcCCccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001750 130 VKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1018)
Q Consensus 130 ~~eylVKw~~~Sy~h~~W~~e~~l~~~~~~~~~~~~kl~~f~kk 173 (1018)
..||||||+|||+-||||+|+..+.. |+| |..|.++
T Consensus 25 rvEYlVKWkGWs~kyNTWEPEENILD-----pRL---i~AFe~r 60 (369)
T KOG2748|consen 25 RVEYLVKWKGWSQKYNTWEPEENILD-----PRL---IAAFEQR 60 (369)
T ss_pred ceEEEEEecccccccCccCccccccC-----HHH---HHHHHhh
Confidence 47999999999999999999998863 433 5556544
No 196
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.05 E-value=0.00036 Score=85.37 Aligned_cols=47 Identities=36% Similarity=0.880 Sum_probs=44.8
Q ss_pred cccccccccCCCeEecCCCCccccccccCCCCCCCCCCCCCccccCC
Q 001750 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1018)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1018)
++.|..|.+.|+++||.+|++.||+.|..||+...|+..|.|-.|.-
T Consensus 344 ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 57899999999999999999999999999999999999999999983
No 197
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.02 E-value=0.00029 Score=57.51 Aligned_cols=37 Identities=43% Similarity=0.918 Sum_probs=29.0
Q ss_pred hhhhhhhhcCCccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001750 130 VKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1018)
Q Consensus 130 ~~eylVKw~~~Sy~h~~W~~e~~l~~~~~~~~~~~~kl~~f~kk 173 (1018)
..+|||||+|+++.+|||+|+..|... + ..+.+|.++
T Consensus 17 ~~~ylVkW~g~~~~~~tW~~~~~l~~~----~---~~v~~~~~~ 53 (55)
T smart00298 17 ELEYLVKWKGYSYSEDTWEPEENLLNC----S---KKLDNYKKK 53 (55)
T ss_pred cEEEEEEECCCCCccCceeeHHHHHHH----H---HHHHHHHHh
Confidence 368999999999999999999998631 1 356667654
No 198
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.01 E-value=0.00048 Score=86.56 Aligned_cols=62 Identities=27% Similarity=0.714 Sum_probs=48.9
Q ss_pred cccccccccccCC-----CeEecCCCCccccccccCCCCCCCCCCCCCccccCCCCCccccccccccccCcC
Q 001750 49 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVA 115 (1018)
Q Consensus 49 ~~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekIL~wR~~p~~~ 115 (1018)
..+.+|.+|.++. .++.||.|..++|+.|.. ...+|+|.|.|..|.-.+... +.|-+.|...
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~---v~c~~cp~~~ 283 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP---VRCLLCPSKG 283 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcc---cceEeccCCC
Confidence 4567899999763 389999999999999995 667899999999999776554 4444456543
No 199
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=96.94 E-value=0.00039 Score=81.38 Aligned_cols=48 Identities=35% Similarity=0.983 Sum_probs=42.8
Q ss_pred cccccccccccCCC---eEecCCCCccccccccCCCCCCCCCCCCCccccC
Q 001750 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1018)
Q Consensus 49 ~~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 96 (1018)
..+.+|..|+.+|+ ++.|+.|+-+||.+|..|++..+|.|.|+|+.|.
T Consensus 66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred CCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 34677888887665 8999999999999999999999999999999887
No 200
>PRK10536 hypothetical protein; Provisional
Probab=96.90 E-value=0.011 Score=63.93 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=83.9
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHh-cCCCCceEEEeCCccHHHHHHHHHHHcCCCeEEEE
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~-~~~~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y 364 (1018)
....|...+.+| ..+..+++.-+.|+|||..++++..... ......++|+=|.-.. .|.-.|.|
T Consensus 60 ~n~~Q~~~l~al----~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLP------- 124 (262)
T PRK10536 60 RNEAQAHYLKAI----ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLP------- 124 (262)
T ss_pred CCHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCC-------
Confidence 456888888877 3456889999999999999999988654 4333455555444322 23333333
Q ss_pred ecChHHHH------HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccc
Q 001750 365 VGTSQARN------IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 365 ~g~~~~r~------~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaH 438 (1018)
|+...+- +....+..+.... ..+ .. ....-.|-|.+...++- ..+.=++|||||||
T Consensus 125 -G~~~eK~~p~~~pi~D~L~~~~~~~~--~~~-----~~-----~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaq 186 (262)
T PRK10536 125 -GDIAEKFAPYFRPVYDVLVRRLGASF--MQY-----CL-----RPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQ 186 (262)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHH--HHH-----HH-----HhccCcEEEecHHHhcC-----CcccCCEEEEechh
Confidence 2222111 0001111000000 000 00 00012245555444432 12234789999999
Q ss_pred cccCcccHHHHHHHhcccccEEEEecCCCCCC
Q 001750 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (1018)
Q Consensus 439 rlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~ 470 (1018)
++.- ..+...+..+....+++++|-|-|..
T Consensus 187 n~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 187 NVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred cCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 8744 45666677788889999999997665
No 201
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.89 E-value=0.00045 Score=77.53 Aligned_cols=65 Identities=29% Similarity=0.714 Sum_probs=51.4
Q ss_pred cccccccccccccCC-----CeEecCCCCccccccccCCCCCCCCCCCCCccccCCCCCccccccccccccCcCC
Q 001750 47 IDAKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAG 116 (1018)
Q Consensus 47 ~~~~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekIL~wR~~p~~~~ 116 (1018)
+|.-++.|.+|.... .++.||+|.-+.|..|. .+..+|+|.|+|..|.-.+ ..+..|-+.|...|
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~---~~i~~C~fCps~dG 258 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGE---YQIRCCSFCPSSDG 258 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhcccc---cceeEEEeccCCCC
Confidence 445567899998653 29999999999999999 7789999999999999755 34556666776543
No 202
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.79 E-value=0.0087 Score=62.86 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=68.6
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeCCccHHHHHHHHHHHcCCCeEEEE
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y 364 (1018)
+-..|...++.|. ...-+++.-..|+|||+.|++....+...+ ..+++|+-|..-... ++ -+.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~---~l-Gflp------- 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE---DL-GFLP------- 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc---cc-ccCC-------
Confidence 4468999998774 667889999999999999999888776654 447777777654322 11 1111
Q ss_pred ecChHHH------HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccc
Q 001750 365 VGTSQAR------NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 365 ~g~~~~r------~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaH 438 (1018)
|+...+ .+....+..+....... -...-.|-+.+...++- ..++..+|||||||
T Consensus 70 -G~~~eK~~p~~~p~~d~l~~~~~~~~~~~--------------~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQ 129 (205)
T PF02562_consen 70 -GDLEEKMEPYLRPIYDALEELFGKEKLEE--------------LIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQ 129 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHHH--------------HHHTTSEEEEEGGGGTT-------B-SEEEEE-SGG
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHhHHH--------------HhhcCeEEEEehhhhcC-----ccccceEEEEeccc
Confidence 221111 11111111111110000 00011233333222211 23455899999999
Q ss_pred cccCcccHHHHHHHhcccccEEEEecCCCCCCH
Q 001750 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1018)
Q Consensus 439 rlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~ 471 (1018)
++.. ..+...+..+....++.++|-|.|...
T Consensus 130 N~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 130 NLTP--EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp G--H--HHHHHHHTTB-TT-EEEEEE-------
T ss_pred CCCH--HHHHHHHcccCCCcEEEEecCceeecC
Confidence 7643 345556777778899999999977654
No 203
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.77 E-value=0.0003 Score=91.87 Aligned_cols=51 Identities=33% Similarity=0.918 Sum_probs=45.2
Q ss_pred cccccccccccCC---CeEecCCCCccccccccCCCCCCCCCCCCCccccCCCC
Q 001750 49 AKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1018)
Q Consensus 49 ~~~~~C~~C~~~~---~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1018)
.....|.+|...+ +++.|+.|..+||+.|+.|.+..+|.++|+||.|....
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4567899998754 49999999999999999999999999999999999644
No 204
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.64 E-value=0.00088 Score=78.94 Aligned_cols=46 Identities=28% Similarity=0.842 Sum_probs=41.1
Q ss_pred ccccccccccC-----CCeEecCCCCccccccccCCCCCCCCCCCCCccccCC
Q 001750 50 KDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1018)
Q Consensus 50 ~~~~C~~C~~~-----~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1018)
++..|-+|..+ .+|++||.|.-..|+.|. .+..+|+|.|.|..|.-
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCAL 320 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhccc
Confidence 56779999876 349999999999999999 88999999999999984
No 205
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.50 E-value=0.0059 Score=62.40 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=55.3
Q ss_pred HHhCCeEEEEechhhHHHHHHHHHhhCCC--cEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecc--cccccccCC--
Q 001750 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR--AGGLGINLA-- 694 (1018)
Q Consensus 621 ~~~g~kvLIFsq~~~~ldiL~~~L~~~g~--~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstr--agg~GINL~-- 694 (1018)
...+.++|||...-..++.+.+.+...+. .+..+.- +...++.+++.|..... .+|+++. ...+|||++
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--ECE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCCCc
Confidence 34567999999999999999999976532 1122221 35678999999987433 3677777 889999998
Q ss_pred CCCEEEEEcCCC
Q 001750 695 TADTVIIYDSDW 706 (1018)
Q Consensus 695 ~ad~VIi~D~dw 706 (1018)
.+..||+.-.|+
T Consensus 81 ~~r~vii~glPf 92 (167)
T PF13307_consen 81 LLRAVIIVGLPF 92 (167)
T ss_dssp SEEEEEEES---
T ss_pred hhheeeecCCCC
Confidence 478999998886
No 206
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=96.41 E-value=0.0028 Score=69.98 Aligned_cols=55 Identities=33% Similarity=0.409 Sum_probs=47.8
Q ss_pred CcchhhhhhhhccCCCcceeeeeeccccccccccccCCCcCccHHHHHHHHHHhh
Q 001750 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (1018)
Q Consensus 190 ~~~~verIi~~~~~~~~~~ylVKW~~L~Y~~~tWE~~~~~~~~~~~i~~~~~~~~ 244 (1018)
+...|++|+++|...|..+|||||+|-|=.+.|||.+.+...+.+.|+.|..-..
T Consensus 47 ~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~ 101 (270)
T KOG1911|consen 47 EEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQK 101 (270)
T ss_pred chhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhc
Confidence 4458999999998888899999999999999999998866677999999987543
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.35 E-value=0.0041 Score=60.29 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=27.0
Q ss_pred eEEEEcccccccCcccHHHHHHHhc--ccccEEEEecCC
Q 001750 430 QCMIVDEGHRLKNKDSKLFSSLKQY--STRHRVLLTGTP 466 (1018)
Q Consensus 430 ~~lIvDEaHrlKn~~s~~~~~l~~l--~~~~rllLTgTP 466 (1018)
.+|||||+|++. .......+..+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25566666655 466789999999
No 208
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.34 E-value=0.0054 Score=72.13 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=62.8
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc-cHHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~~W~~E~~~~~p~~~vv 362 (1018)
.+|-.-|..||... -++.=.||--..|+|||+++.+++++|...+.+|+||++|.. .+.|-..-|.+- .++|+
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t--gLKVv 482 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT--GLKVV 482 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc--CceEe
Confidence 36888999999776 456678999999999999999999999998888999999965 457777667663 47777
Q ss_pred EEec
Q 001750 363 MYVG 366 (1018)
Q Consensus 363 ~y~g 366 (1018)
-...
T Consensus 483 Rl~a 486 (935)
T KOG1802|consen 483 RLCA 486 (935)
T ss_pred eeeh
Confidence 6654
No 209
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.31 E-value=0.038 Score=58.01 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1018)
+|-+-|.+++..+.. ...+-.+|.-..|+|||.....+...+...+ .++++++|++..
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHH
Confidence 477899999987742 2334577888999999987666665555543 689999998654
No 210
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.29 E-value=0.0013 Score=75.43 Aligned_cols=54 Identities=26% Similarity=0.663 Sum_probs=43.1
Q ss_pred ccccccccCC-----CeEecCCCCccccccccCCCCCC----CCCCCCCccccCCCCCccccc
Q 001750 52 DSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLNDIDKI 105 (1018)
Q Consensus 52 ~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~l~~----~p~~~W~C~~C~~~~~~iekI 105 (1018)
..|.+|+.++ .||.|+.|...||..|+.|+... -+...|+|..|...+..+...
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~ 231 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRL 231 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcccc
Confidence 3499998653 49999999999999999998754 356789999999877655543
No 211
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.26 E-value=0.0075 Score=69.14 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=49.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCC-C-ceEEEeC
Q 001750 277 SPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-S-PHLVVAP 341 (1018)
Q Consensus 277 ~P~~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~-~-p~LIV~P 341 (1018)
.|.+.+-...+|-|.+-..-+......++.|+|-++.|+|||+.-++++.......+ . .-||-|.
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 344455567899999988888888999999999999999999999988766544333 2 3455555
No 212
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.17 E-value=0.025 Score=69.86 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=83.9
Q ss_pred CCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhcc
Q 001750 313 MGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK 391 (1018)
Q Consensus 313 mGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~ 391 (1018)
.|.|||-..+.++...+..+. .+||++|. ++..|+...|...+++..+++||+.....+..+.+.-.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~----------- 236 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV----------- 236 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH-----------
Confidence 399999999999988877653 69999995 77799999999999767899999876655443333111
Q ss_pred ccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccc--cCcccHHH--H--H-HH-hcccccEEEEe
Q 001750 392 KSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL--KNKDSKLF--S--S-LK-QYSTRHRVLLT 463 (1018)
Q Consensus 392 ~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrl--Kn~~s~~~--~--~-l~-~l~~~~rllLT 463 (1018)
......|||-|...+-. ---+..+|||||=|.- |...+-.+ + + ++ ....-..+|-|
T Consensus 237 -----------~~G~~~IViGtRSAvFa-----P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgS 300 (665)
T PRK14873 237 -----------LRGQARVVVGTRSAVFA-----PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGG 300 (665)
T ss_pred -----------hCCCCcEEEEcceeEEe-----ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEEC
Confidence 12345788888765421 1224578999999864 33222111 1 1 11 12234567779
Q ss_pred cCC
Q 001750 464 GTP 466 (1018)
Q Consensus 464 gTP 466 (1018)
+||
T Consensus 301 aTP 303 (665)
T PRK14873 301 HAR 303 (665)
T ss_pred CCC
Confidence 999
No 213
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.14 E-value=0.02 Score=65.90 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=33.2
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhc-CCCCceEEEeCCccHHHHHHH
Q 001750 307 VILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPLSTLRNWERE 351 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~-~~~~p~LIV~P~s~l~~W~~E 351 (1018)
+|+.-..|+|||+.++.++..+.. ......+++|+...+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHH
Confidence 567778999999999999998822 223477888887777664443
No 214
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.96 E-value=0.029 Score=69.39 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=55.3
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCcc-HHHHHHHHHHHcCCCeEE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~~W~~E~~~~~p~~~vv 362 (1018)
..|-+.|..+|.... ......++--..|+|||.+++.++..+...+. ++||++|+.. +.+....+..- +++++
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~~--~~~vv 229 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLALC--DQKIV 229 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHhC--CCcEE
Confidence 468899999997652 34467889999999999999999988876543 8999999654 45666656542 34444
Q ss_pred EE
Q 001750 363 MY 364 (1018)
Q Consensus 363 ~y 364 (1018)
-+
T Consensus 230 Rl 231 (637)
T TIGR00376 230 RL 231 (637)
T ss_pred Ee
Confidence 44
No 215
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.95 E-value=0.0059 Score=66.64 Aligned_cols=49 Identities=33% Similarity=0.379 Sum_probs=41.9
Q ss_pred hhhhhhhhccCCCcceeeeeeccccccccccccCCCcCccHHHHHHHHHH
Q 001750 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1018)
Q Consensus 193 ~verIi~~~~~~~~~~ylVKW~~L~Y~~~tWE~~~~~~~~~~~i~~~~~~ 242 (1018)
.+|-||.+|...|..+|||||+|-.--..|||.+..|-. .-+|..|...
T Consensus 12 AaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILD-pRLi~AFe~r 60 (369)
T KOG2748|consen 12 AAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILD-PRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHhhccceEEEEEecccccccCccCccccccC-HHHHHHHHhh
Confidence 588999999888999999999999999999999988743 5677888753
No 216
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.79 E-value=0.0037 Score=80.68 Aligned_cols=179 Identities=26% Similarity=0.394 Sum_probs=98.9
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCcc--HHHHHHHHHHHHhcC-CCCceEEEeCCccHHHHHHHHHHHcCCCeE
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLG--KTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlG--KTiqai~~l~~l~~~-~~~p~LIV~P~s~l~~W~~E~~~~~p~~~v 361 (1018)
.+.++|.....-.. ........++++.|+| ||+.+..+....... .....++++|..+..+|..+...++ ....
T Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVL--NELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKF-NIRL 160 (866)
T ss_pred ccCcchhhhhhhhh--hhhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhc-cccc
Confidence 45566665543211 1222338899999999 899987776655443 3448899999888899999987653 1111
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----cccccCCcc---eEEEE
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKW---QCMIV 434 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d----~~~l~~i~w---~~lIv 434 (1018)
....-.. .+........+. .......++.+.+..... ...+....| +++++
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (866)
T COG0553 161 AVLDKEG-LRYLLKQYDAYN---------------------PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVI 218 (866)
T ss_pred hhhhhhh-hhhhhhhhcccc---------------------cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhc
Confidence 1110000 000000000000 000000033344443332 223344456 79999
Q ss_pred cccccccCcc---------cHHHHHHHhccc--------ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCC
Q 001750 435 DEGHRLKNKD---------SKLFSSLKQYST--------RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1018)
Q Consensus 435 DEaHrlKn~~---------s~~~~~l~~l~~--------~~rllLTgTPlqN~~~EL~~Ll~fL~p~~~~~ 488 (1018)
||+|.+.+.. ...+..+..... -....+++||.+....+++....++.+..+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 219 DEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred chHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 9999987642 233333333321 12347899999999888888778887777665
No 217
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=95.42 E-value=0.015 Score=57.55 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=27.0
Q ss_pred eEecCCCCccccccccCCCCCCC------------------CCCCCCccccC
Q 001750 63 LMSCDTCTYAYHAKCLVPPLKAP------------------PSGSWRCPECV 96 (1018)
Q Consensus 63 l~~C~~C~~~~H~~Cl~p~l~~~------------------p~~~W~C~~C~ 96 (1018)
|++|..|.|+||+.+|+|+-... .+.+|.|.+|.
T Consensus 124 LFRC~~C~RawH~~HLP~~~~~~~~~~~~~~~~~~~~R~~EYs~~W~C~dC~ 175 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPSGTTSDDDDDDDTDLRSQRLKEYSIDWQCKDCA 175 (175)
T ss_pred EEecCCccceeehhhCCCCcCCCCCcccccchhHHHHHHHHhCCccccCCCC
Confidence 99999999999999997763211 14579999984
No 218
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.17 E-value=0.13 Score=64.77 Aligned_cols=65 Identities=23% Similarity=0.160 Sum_probs=49.3
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeCCccHHHHHHH
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~~W~~E 351 (1018)
+..|.+-|.+++..+ ..++-.+|.-..|+|||..+-+++..+...+ ..++++++|+..-.....+
T Consensus 321 ~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 457999999999866 3556899999999999988877777665543 2478889998766654443
No 219
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.11 E-value=0.036 Score=65.39 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc-cHHHHHHH
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWERE 351 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~~W~~E 351 (1018)
..|-+-|..++.++. .+..-.++--+.|+|||.+..-+|..+...+ ..+||.+|+. .+.|-...
T Consensus 184 ~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHHH
Confidence 457789999998763 3335678888999999999999988887765 6899999965 44665543
No 220
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=95.06 E-value=0.056 Score=68.15 Aligned_cols=142 Identities=22% Similarity=0.276 Sum_probs=93.2
Q ss_pred ccccccccCCCCCCCCCChhHHHHHHHHHH--------------------HhhcCCCceEEEcCCCccHHHHHHHHHHHH
Q 001750 269 KEFQQYEHSPEFLSGGSLHPYQLEGLNFLR--------------------FSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (1018)
Q Consensus 269 ~~~~~~~~~P~~~~~~~L~~yQ~egv~wl~--------------------~~~~~~~~~ILaDemGlGKTiqai~~l~~l 328 (1018)
-.|..+..+-.+.+.+.|.+.|-.-+--|. ..+..+.+++++...|+|||++|-..+.
T Consensus 1104 vsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l-- 1181 (1674)
T KOG0951|consen 1104 VSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALL-- 1181 (1674)
T ss_pred cchhhccCcccCCCCchhhhccccchhccCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhc--
Confidence 345555545455555566666655443331 2235678899999999999988743332
Q ss_pred hcCCCCceEEEeCCccH-----HHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 001750 329 FGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 403 (1018)
Q Consensus 329 ~~~~~~p~LIV~P~s~l-----~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1018)
.....+.+.-++|...+ .-|.+-|... .++.++...|...--.. .
T Consensus 1182 ~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk-----------------------------l 1231 (1674)
T KOG0951|consen 1182 RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK-----------------------------L 1231 (1674)
T ss_pred CCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH-----------------------------H
Confidence 24556689999998766 5598888887 47777777776432211 1
Q ss_pred cccccEEEccHHHHhhccccccCCcceEEEEcccccccCccc
Q 001750 404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS 445 (1018)
Q Consensus 404 ~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s 445 (1018)
..+-+|+|.|++....-. ... .-++.|+||.|-+.+...
T Consensus 1232 ~~~~~vii~tpe~~d~lq-~iQ--~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1232 LQKGQVIISTPEQWDLLQ-SIQ--QVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred hhhcceEEechhHHHHHh-hhh--hcceEeeehhhhhcccCC
Confidence 235689999999875442 222 457899999999876443
No 221
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.02 E-value=0.0057 Score=45.27 Aligned_cols=34 Identities=35% Similarity=0.948 Sum_probs=19.3
Q ss_pred CCeEecCCCCccccccccCCCCCCCCCC-CCCccccC
Q 001750 61 ENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECV 96 (1018)
Q Consensus 61 ~~l~~C~~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~ 96 (1018)
..|+.|+.|.-..|..|. .+...|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 358999999999999999 66666666 79999884
No 222
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.00 E-value=0.01 Score=69.65 Aligned_cols=84 Identities=29% Similarity=0.689 Sum_probs=56.6
Q ss_pred cccccccC-----CCeEecCC--CCccccccccCCCCCCCCCCCCCccccCCCCCccccccccccccCcCCCCCcccccc
Q 001750 53 SCQACGES-----ENLMSCDT--CTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGS 125 (1018)
Q Consensus 53 ~C~~C~~~-----~~l~~C~~--C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekIL~wR~~p~~~~~~~~~~~~~ 125 (1018)
-|-||.+. ..|+.||+ |.-+.|..|. .+..+|.|.|||..|..-... ..+.|..+|-..+.-+-.++
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCesqera--arvrCeLCP~kdGALKkTDn-- 80 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCESQERA--ARVRCELCPHKDGALKKTDN-- 80 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhhhhhh--ccceeecccCcccceecccC--
Confidence 38889863 23999985 9999999999 889999999999999853221 12455566765432111111
Q ss_pred cchhhhhhhhhhcCCccccc-cccchHhHH
Q 001750 126 KQIFVKQYLVKWKGLSYLHC-TWVPEKEFL 154 (1018)
Q Consensus 126 ~~~~~~eylVKw~~~Sy~h~-~W~~e~~l~ 154 (1018)
-||.|.-| -+|||..+-
T Consensus 81 ------------~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 81 ------------GGWAHVVCALYIPEVRFG 98 (900)
T ss_pred ------------CCceEEEEEeeccceeec
Confidence 25777776 567776543
No 223
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.99 E-value=0.2 Score=48.45 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=28.0
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1018)
+..++|.-+.|.|||..+-.++..+... ..+++++......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~ 59 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLL 59 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhh
Confidence 6778999999999998877777666422 2355555444433
No 224
>PLN03025 replication factor C subunit; Provisional
Probab=94.83 E-value=0.3 Score=55.42 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.4
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
.+.+|.-+.|+|||..+.+++..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 468999999999999999999887654
No 225
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.74 E-value=0.9 Score=56.29 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|...+..+ ...||.-.-|+|||..+..|...|..+
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 444444454444443 245899999999999999999888654
No 226
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.62 E-value=0.2 Score=57.48 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|.+++..|...+..++ ..++.-+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4556677777777666 47899999999999999999998764
No 227
>PRK04296 thymidine kinase; Provisional
Probab=94.50 E-value=0.1 Score=54.58 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.1
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1018)
.++.-+||.|||..++.++..+...+ .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 57788999999999999988775543 36666655
No 228
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.34 E-value=0.29 Score=59.98 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCC----CceEEEeCCccH
Q 001750 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTL 345 (1018)
Q Consensus 288 ~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~----~p~LIV~P~s~l 345 (1018)
+.|..++... ..+.-++|.-..|+|||.++..++..+..... ..+++++|+.--
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHH
Confidence 7999998655 44678999999999999998888877754321 368899997544
No 229
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.32 E-value=0.19 Score=59.41 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|......++ ..|+.-+.|.|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444444444443 35999999999999999999887654
No 230
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.32 E-value=0.087 Score=56.01 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=61.8
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHH
Q 001750 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1018)
Q Consensus 282 ~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~ 355 (1018)
.+..+|+-|.+-+..|+.. ..+.|.++-.-||-|||-..+-+++.++..+..=+-+|||.+++.+-.+-+..-
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 4567999999999888654 567899999999999999999999988888777788999999998877776543
No 231
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.65 E-value=0.36 Score=54.98 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCC--ceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 293 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 293 gv~wl~~~~~~~~--~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
.+.+|......+. ..+|.-+.|+|||..+.++...+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3444444444554 789999999999999999998886543
No 232
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.34 E-value=0.26 Score=60.60 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC---CCceEEEeCCccHH
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLR 346 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l~ 346 (1018)
..+.|++++.-. ..++-++|.-..|+|||.++..++..+.... ...+++++|+.--.
T Consensus 153 ~~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA 212 (615)
T PRK10875 153 EVDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAA 212 (615)
T ss_pred CCHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHH
Confidence 458999998654 4567899999999999999888888775532 23678889976543
No 233
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.32 E-value=3.4 Score=52.72 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.7
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..||.-..|+|||..+..|...|...
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 46899999999999999999988753
No 234
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.31 E-value=0.25 Score=58.26 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=31.9
Q ss_pred EcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHH
Q 001750 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRN 347 (1018)
Q Consensus 310 aDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~ 347 (1018)
-+.+|+|||+++.++|.+++..+...||..|-. +++..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilek 41 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEK 41 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHH
Confidence 357899999999999999999998899998874 45443
No 235
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.28 E-value=0.64 Score=56.74 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.1
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
...||.-..|+|||..+..+...|...
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 345899999999999999999988753
No 236
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.14 E-value=0.34 Score=59.67 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=56.5
Q ss_pred eEEEEechhhHHHHHHHHHhhCC-------CcEEEEeCCCChHHHHHHHHHhcc----CCC-CceEEEeecccccccccC
Q 001750 626 RVLIYSQFQHMLDLLEDYLTFKK-------WQYERIDGKVGGAERQIRIDRFNA----KNS-SRFCFLLSTRAGGLGINL 693 (1018)
Q Consensus 626 kvLIFsq~~~~ldiL~~~L~~~g-------~~~~rldG~~~~~~Rq~~i~~Fn~----~~s-~~~v~Llstragg~GINL 693 (1018)
.+|||..+-.++|-+..+....+ .+-..+ .--+..+=.+++.+|.+ +.+ +..-+.|+--..++||+.
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 49999999999999877765432 222111 11133333445556542 222 222355677778999999
Q ss_pred C--CCCEEEEEcCCCCcchHHHHH
Q 001750 694 A--TADTVIIYDSDWNPHADLQAM 715 (1018)
Q Consensus 694 ~--~ad~VIi~D~dwNp~~~~Qa~ 715 (1018)
. .+..||+...++=|..|.|-.
T Consensus 642 sD~~~RaVI~tGlPyP~~~D~~V~ 665 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPPVMDPRVK 665 (945)
T ss_pred cccCCceeEEecCCCCCCCCHHHH
Confidence 8 578899999998777776644
No 237
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.08 E-value=0.22 Score=54.84 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=21.8
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
.+.+|.-+.|+|||..|-++...+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46799999999999999888776654
No 238
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.08 E-value=4.6 Score=48.99 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=45.8
Q ss_pred eEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCC-----hHHHHHHHHHhccC-CCCceEEEeec--ccccccccCCC--
Q 001750 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-----GAERQIRIDRFNAK-NSSRFCFLLST--RAGGLGINLAT-- 695 (1018)
Q Consensus 626 kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~-----~~~Rq~~i~~Fn~~-~s~~~v~Llst--ragg~GINL~~-- 695 (1018)
=|++|...-..|..+...+...|+ ..+|.|.-+ ..--.++++.|... ..+.=++|++. .-.++|||+..
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gi-l~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~L 709 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGI-LARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDL 709 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcch-HHHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccccc
Confidence 477777777777777777765554 112222111 00024566666421 11111345444 44589999985
Q ss_pred CCEEEEEcCCCC
Q 001750 696 ADTVIIYDSDWN 707 (1018)
Q Consensus 696 ad~VIi~D~dwN 707 (1018)
+..||....|+-
T Consensus 710 gRaVvvVGlPyP 721 (821)
T KOG1133|consen 710 GRAVVVVGLPYP 721 (821)
T ss_pred ccEEEEeecCCC
Confidence 788888888773
No 239
>PRK06526 transposase; Provisional
Probab=93.06 E-value=0.29 Score=53.54 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHH
Q 001750 291 LEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1018)
Q Consensus 291 ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~ 353 (1018)
+.+.+|+ ..+.+.+|.-..|+|||..+.++...+...+. +++++ +...|..++.
T Consensus 89 l~~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~-~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 89 LGTLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAGH-RVLFA----TAAQWVARLA 142 (254)
T ss_pred HhcCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCCC-chhhh----hHHHHHHHHH
Confidence 3344666 56789999999999999999999888766543 34332 3345655554
No 240
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.00 E-value=0.89 Score=52.77 Aligned_cols=132 Identities=12% Similarity=0.144 Sum_probs=72.4
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcC---CCCceEEEeCCc-cH-HHHHHHHHHHcCCCeEEEEecChHHHHHHHHhh
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLS-TL-RNWEREFATWAPQMNVVMYVGTSQARNIIREYE 378 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~---~~~p~LIV~P~s-~l-~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e 378 (1018)
+...++.-.+|.|||.++.-++..+... ...++.+|+-.. -. ..|+ +..|+-.+.+-+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~~------------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVKA------------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceEe-------------
Confidence 3457789999999999987777665432 123455544432 12 2222 55555222221111
Q ss_pred hcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccCccc---HHHHHHHhcc
Q 001750 379 FYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS---KLFSSLKQYS 455 (1018)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s---~~~~~l~~l~ 455 (1018)
+.+++.+......+ -..++||||++.+.....- .+...+....
T Consensus 239 --------------------------------~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~ 284 (388)
T PRK12723 239 --------------------------------IESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACG 284 (388)
T ss_pred --------------------------------eCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC
Confidence 12233332222222 2468999999998864332 2333333333
Q ss_pred c--ccEEEEecCCCCCCHHHHHHHHHhhcCC
Q 001750 456 T--RHRVLLTGTPLQNNLDELFMLMHFLDAG 484 (1018)
Q Consensus 456 ~--~~rllLTgTPlqN~~~EL~~Ll~fL~p~ 484 (1018)
. ...|.|+||--++.+.+.++-...+.+.
T Consensus 285 ~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~ 315 (388)
T PRK12723 285 RDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK 315 (388)
T ss_pred CCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 2 3568899998878887777665555443
No 241
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=92.71 E-value=0.044 Score=66.87 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=60.6
Q ss_pred ccccccccccCCCeEecCCCCccccccccCCCCCCCCCCCCCccccCCCCCccccccccccccCcCCCCCcccccccchh
Q 001750 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF 129 (1018)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekIL~wR~~p~~~~~~~~~~~~~~~~~ 129 (1018)
...-|.+|..++.+.+|+.|++.||..|+.|+...++..-|.|..|..
T Consensus 176 ~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~-------------------------------- 223 (696)
T KOG0383|consen 176 PEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKG-------------------------------- 223 (696)
T ss_pred ccccccccccCccccccccchhhhhheeccccccccchhhhhhccccc--------------------------------
Confidence 345588899999999999999999999999988888877787766652
Q ss_pred hhhhhhhhcCCccccccccchHh
Q 001750 130 VKQYLVKWKGLSYLHCTWVPEKE 152 (1018)
Q Consensus 130 ~~eylVKw~~~Sy~h~~W~~e~~ 152 (1018)
...|+|||+..+|..++|..+..
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~ 246 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDP 246 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCC
Confidence 25799999999999999998874
No 242
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.46 E-value=0.39 Score=45.87 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=31.9
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W 348 (1018)
+...+|.-.+|+|||..+..++..+.... ..++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC
Confidence 46788999999999999988887765443 356777665544433
No 243
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.29 E-value=0.71 Score=52.51 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
.++|+|.....-+...-.-....++.-+.|+|||..|..|...+....
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 367888888766655422233467899999999999999999987653
No 244
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.24 E-value=0.46 Score=53.35 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=40.7
Q ss_pred cccCCCCCCCCCCh-hHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHH-hcC-CCCceEEEeCCccH
Q 001750 274 YEHSPEFLSGGSLH-PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGE-RISPHLVVAPLSTL 345 (1018)
Q Consensus 274 ~~~~P~~~~~~~L~-~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l-~~~-~~~p~LIV~P~s~l 345 (1018)
+...+....|...+ -+|.-++..|.. ..-.=+.|.-.-|+|||+-|++...+- +.. ....++|-=|.--+
T Consensus 216 l~~~~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 216 LKHEDQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred cccCchhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 33444444554433 489889887632 233446788999999999987754432 222 22345554454433
No 245
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.24 E-value=0.63 Score=46.09 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHhccCCCCceEEEeecccccccccCCC--CCEEEEEcCCC
Q 001750 659 GGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADTVIIYDSDW 706 (1018)
Q Consensus 659 ~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~--ad~VIi~D~dw 706 (1018)
.+.+...+++.|...... .+|+++....+|||++. +..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344578899999864332 46888877999999984 67899988665
No 246
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.22 E-value=0.69 Score=53.92 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.1
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
...|+.-+.|.|||..|.++...+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 347799999999999999999888654
No 247
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.19 E-value=0.68 Score=57.04 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~--~-~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|...+..++ + .|+.-+.|+|||..|..|...+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444455555555543 2 5899999999999999999888654
No 248
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.94 E-value=1.5 Score=53.64 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=26.6
Q ss_pred HHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 294 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 294 v~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
+..|...+..+ ...|+....|.|||..|..++..+..
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33343433444 34599999999999999999888754
No 249
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.76 E-value=1.4 Score=53.22 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|......+ ...|+.-..|+|||..|..+...+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444444333 335899999999999999999888654
No 250
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.54 E-value=1.4 Score=44.68 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcCCCC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERIS 334 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~~~~ 334 (1018)
|.+.+..|...+.++ ...|+..+.|.||+..|..|+..++.....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 555666666565554 345899999999999999999999876543
No 251
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.34 E-value=1 Score=54.10 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|.+.+..+ ...||.-+.|+|||..|-.+...+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 444555555544444 468999999999999999999888653
No 252
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.27 E-value=0.69 Score=45.91 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=34.5
Q ss_pred EEEeCCCChHHHHHHHHHhccCCCCceEEEeeccc--ccccccCCC--CCEEEEEcCCC
Q 001750 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA--GGLGINLAT--ADTVIIYDSDW 706 (1018)
Q Consensus 652 ~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstra--gg~GINL~~--ad~VIi~D~dw 706 (1018)
..+.+.. ..+..++++.|+......-.+|+++.. .++|||++. +..||+.-.|+
T Consensus 23 i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3344433 234578899998643310124555555 799999985 68899988775
No 253
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.26 E-value=2.3 Score=50.21 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=34.4
Q ss_pred cceEEEEcccccccCcccH---HHHHHHh--cccccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001750 428 KWQCMIVDEGHRLKNKDSK---LFSSLKQ--YSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn~~s~---~~~~l~~--l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p 483 (1018)
..++||||-+-+....... +...+.. ......|+|++|+-++.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4689999998765433222 2222221 123457889999877777777766665554
No 254
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=91.17 E-value=2.3 Score=49.90 Aligned_cols=126 Identities=14% Similarity=0.175 Sum_probs=91.6
Q ss_pred hHHHHHH-HHHHHHH--HhCCeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeec
Q 001750 608 GKLQLLD-KMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1018)
Q Consensus 608 ~Kl~~L~-klL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llst 684 (1018)
.++.... .+|+.+. ....++|||...---.=.|..+|...++.|+.++-.++..+-..+-..|..+... ++|.+-
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TE 358 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTE 358 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEh
Confidence 3454443 4777777 3346899998866666668899999999999999999999999999999775433 355555
Q ss_pred ccc-cccccCCCCCEEEEEcCCCCcchHHHHHHHHHhhCC----CCcEEEEEEeeC
Q 001750 685 RAG-GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ----TNKVMIFRLITR 735 (1018)
Q Consensus 685 rag-g~GINL~~ad~VIi~D~dwNp~~~~Qa~gR~hRiGQ----~k~V~Iyrlvt~ 735 (1018)
|+- =.=..+-++.+||+|.+|-+|+-|...+.-...-.+ .....|.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 553 344567789999999999999999988865544332 234555556655
No 255
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.13 E-value=1.4 Score=50.99 Aligned_cols=42 Identities=21% Similarity=0.086 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 289 yQ~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
-|...+..|...+..++ ..++.-+.|+|||..|-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 35555555555555543 3589999999999999999888763
No 256
>PRK08181 transposase; Validated
Probab=91.05 E-value=1.5 Score=48.31 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
+..-|..++..+......+.+.+|.-..|+|||..+.++...+...+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 45567766644422225788999999999999999999888776553
No 257
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.96 E-value=1.3 Score=54.50 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|-..++.|...+..+ ...||.-..|+|||..|..+...|...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 444444454444444 357899999999999999999988754
No 258
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.95 E-value=2.8 Score=47.22 Aligned_cols=27 Identities=37% Similarity=0.680 Sum_probs=22.6
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
.+.+|.-+.|.|||..+-.++..+...
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 358999999999999998888877543
No 259
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.84 E-value=0.12 Score=61.04 Aligned_cols=47 Identities=32% Similarity=0.809 Sum_probs=38.9
Q ss_pred cccccccccCCCeEecCCCCccccccccCCCCCC-CCCCCCCccccCC
Q 001750 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 97 (1018)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~-~p~~~W~C~~C~~ 97 (1018)
-..|.+|..+|++++|+.|+.+||..|-.+++.. .+.+.|.|..|..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 4679999999999999999999999999998862 2345677777754
No 260
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.82 E-value=0.6 Score=58.86 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ--THV-ILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~--~~~-ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+.-|...+..+ .+. ||.-+.|.|||..+..|+..|...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 333444444444443 234 899999999999999999888654
No 261
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.71 E-value=1.4 Score=48.33 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhhcCCC-ceEEEcCCCccHHHHHHHHHHHHh
Q 001750 288 PYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLF 329 (1018)
Q Consensus 288 ~yQ~egv~wl~~~~~~~~-~~ILaDemGlGKTiqai~~l~~l~ 329 (1018)
+.+..+++.+.+....+. .++|.-+.|+|||..+-.++..+.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 355567777766555544 578999999999988877766543
No 262
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.55 E-value=1.4 Score=47.08 Aligned_cols=30 Identities=23% Similarity=0.091 Sum_probs=24.2
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..+.+++|.-+.|+|||..+.++.......
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 345678899999999999998888776543
No 263
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.35 E-value=1.8 Score=52.53 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 292 EGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 292 egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
..++.|...+..++ ..|+.-+.|+|||..|..++..+..
T Consensus 23 ~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 23 HALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444444444433 3679999999999999999988864
No 264
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.33 E-value=0.45 Score=53.03 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=26.8
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcCCC---CceEEEe
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVA 340 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~~~---~p~LIV~ 340 (1018)
+.+.+|.-+.|+|||..|.++...+...+. ++++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 346889999999999999888777765432 2555444
No 265
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.07 E-value=2.1 Score=46.23 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
.+...+|.-+.|+|||..+.++...+...
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34578999999999998887777766543
No 266
>CHL00181 cbbX CbbX; Provisional
Probab=89.96 E-value=0.53 Score=52.51 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
+.+.+|.-+.|+|||..|-++...+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3457899999999999998888776554
No 267
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.95 E-value=5.1 Score=49.66 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 291 LEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 291 ~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
...+..|...+..+ ...||.-..|+|||..|..+...+...
T Consensus 22 e~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 22 EHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 33333443333443 356999999999999999998887644
No 268
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.95 E-value=2.6 Score=50.46 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 292 egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..+..|...+..+ ...|+.-..|+|||..|..+...+...
T Consensus 20 ~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 20 VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3444444444443 468899999999999998888777543
No 269
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.72 E-value=1.9 Score=52.03 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 291 LEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 291 ~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
...+..|......+. ..++.-+.|.|||..|..++..+...
T Consensus 20 e~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 20 ESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 333444444444443 23899999999999999999988654
No 270
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.68 E-value=2.2 Score=52.22 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~--~-~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|...+..++ + .|+.-..|+|||..|..++..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4455555555545442 3 4899999999999999999888753
No 271
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.68 E-value=2 Score=51.40 Aligned_cols=26 Identities=35% Similarity=0.295 Sum_probs=22.1
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..||.-+.|+|||..|-.++..+...
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc
Confidence 36899999999999999988887543
No 272
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.67 E-value=1.5 Score=50.06 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHHcCCCeEEEEe
Q 001750 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (1018)
Q Consensus 289 yQ~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y~ 365 (1018)
.|...+..|...+..++ ..++.-+.|.|||..|..++..+........ .|-..+.....-.....|+++.+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~---~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV---EPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 45556666666655543 3489999999999999999998875431111 13333444444444456777776655
Q ss_pred cChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccCc-c
Q 001750 366 GTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK-D 444 (1018)
Q Consensus 366 g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~-~ 444 (1018)
|..-..+.+++.-- .+.. .. +. -.+.++||||||++... .
T Consensus 87 ~~~i~id~ir~l~~------------------------------------~~~~-~~-~~-~~~kvviI~~a~~~~~~a~ 127 (329)
T PRK08058 87 GQSIKKDQIRYLKE------------------------------------EFSK-SG-VE-SNKKVYIIEHADKMTASAA 127 (329)
T ss_pred cccCCHHHHHHHHH------------------------------------HHhh-CC-cc-cCceEEEeehHhhhCHHHH
Confidence 44322222222100 0000 00 11 14678999999998432 2
Q ss_pred cHHHHHHHhcccccEEEEecC
Q 001750 445 SKLFSSLKQYSTRHRVLLTGT 465 (1018)
Q Consensus 445 s~~~~~l~~l~~~~rllLTgT 465 (1018)
..+.+.|......-.++|+.+
T Consensus 128 NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 128 NSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred HHHHHHhcCCCCCceEEEEeC
Confidence 344455555455566666655
No 273
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.35 E-value=2.5 Score=47.99 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=37.0
Q ss_pred ChhHHHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
++|+|...-.-|...+.+++ ..++.-+.|+||+..|..|...+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 56788777777776666643 456889999999999999999997654
No 274
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.30 E-value=2.8 Score=48.41 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
|..++..|...+..++ ..++.-..|+|||..|.+|...++.+.
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 5566666666666653 578999999999999999999998654
No 275
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.23 E-value=3.2 Score=48.03 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=26.0
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1018)
....|.-..|.|||.++..+...+...+. .++++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEec
Confidence 45668889999999998888887765543 4544444
No 276
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.19 E-value=1.7 Score=53.49 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|...+..++ -.|+.-..|+|||..+..+...+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4445555555444443 34899999999999999999888754
No 277
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=88.98 E-value=3.6 Score=46.59 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=40.1
Q ss_pred CChhHHHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
.++|+|......|...+..++ ..++....|+||+..|.+|+..++...
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 588999999888877766554 577999999999999999999998754
No 278
>PHA02533 17 large terminase protein; Provisional
Probab=88.73 E-value=2.2 Score=51.83 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=37.1
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHh-cCCCCceEEEeCC
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPL 342 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~-~~~~~p~LIV~P~ 342 (1018)
-.|.|+|.+-+..|. .++-.++.-.=..|||..+.+++.++. ......+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 468999999887662 234456777778999998876554433 2333377777884
No 279
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=88.72 E-value=0.46 Score=57.96 Aligned_cols=166 Identities=15% Similarity=0.213 Sum_probs=96.1
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc-cHHHHHHH-HHHHcCCCeE
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWERE-FATWAPQMNV 361 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~~W~~E-~~~~~p~~~v 361 (1018)
....|||.+-++-|... .-..+.+.-..-+|||...+.++.+.....++|+|+|.|+. ....|..+ |.-..
T Consensus 15 ~~~~Py~~eimd~~~~~--~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi----- 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDP--SVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI----- 87 (557)
T ss_pred CCCChhHHHHHHhcCCc--CccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH-----
Confidence 46889999998866221 23567788888899999999999999888899999999974 44556533 33221
Q ss_pred EEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEccccccc
Q 001750 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (1018)
Q Consensus 362 v~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlK 441 (1018)
..+...+..+.. .. .+.....+... ....-.+.++... -...|.+....+|++||..++-
T Consensus 88 ---~~sp~l~~~~~~------~~-----~~~~~~t~~~k--~f~gg~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 ---RASPVLRRKLSP------SK-----SRDSGNTILYK--RFPGGFLYLVGAN----SPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ---HhCHHHHHHhCc------hh-----hcccCCchhhe--ecCCCEEEEEeCC----CCcccccCCcCEEEEechhhcc
Confidence 111111111111 00 00000000000 0001123333322 2346788888999999999883
Q ss_pred ----CcccH---HHHHHHhcccccEEEEecCCCCCCHHHHHH
Q 001750 442 ----NKDSK---LFSSLKQYSTRHRVLLTGTPLQNNLDELFM 476 (1018)
Q Consensus 442 ----n~~s~---~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ 476 (1018)
+..+. ..+....+....++++..||......-+..
T Consensus 148 ~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~ 189 (557)
T PF05876_consen 148 DDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIER 189 (557)
T ss_pred ccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHH
Confidence 23333 333444555678999999997664333333
No 280
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=88.61 E-value=0.16 Score=60.23 Aligned_cols=96 Identities=27% Similarity=0.487 Sum_probs=56.7
Q ss_pred ccccccccccCC-----CeEecCCCCccccccccCCCCCCC-CCCCCCccccCC-----CCCccccccccccccCcCCCC
Q 001750 50 KDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVS-----PLNDIDKILDCEMRPTVAGDS 118 (1018)
Q Consensus 50 ~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~-----~~~~iekIL~wR~~p~~~~~~ 118 (1018)
.+..|.+|+..| .|+.|..|...||.+|+.--+... -.+-|.||.|.- ..+++.+.+.|. +. +.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~Ck--~c---Dv 91 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLCK--RC---DV 91 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCcccccccc--cc---cc
Confidence 456788888654 499999999999999996444332 244599999983 124455555552 22 11
Q ss_pred Cccccccc----chhhhhhhhhhcCCccccccccch
Q 001750 119 DVSKLGSK----QIFVKQYLVKWKGLSYLHCTWVPE 150 (1018)
Q Consensus 119 ~~~~~~~~----~~~~~eylVKw~~~Sy~h~~W~~e 150 (1018)
.++-...+ ...--.|+.||.-+=+-|..=+|.
T Consensus 92 syh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg 127 (694)
T KOG4443|consen 92 SYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPG 127 (694)
T ss_pred cccccccCCccccccCcccccHHHHhhhhccccccc
Confidence 11111111 112246788887766666554443
No 281
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.54 E-value=2 Score=49.56 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHhh-c--CCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 286 LHPYQLEGLNFLRFSW-S--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~-~--~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
=|..|++.+.-.+..+ . ...+++|.-+.|+|||..+-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3778888774433332 2 2357899999999999999888887753
No 282
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.50 E-value=3.4 Score=46.65 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=24.8
Q ss_pred ceEEEEcccccccCcc--cHHHHHHHhcccccEEEEecCCC
Q 001750 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPL 467 (1018)
Q Consensus 429 w~~lIvDEaHrlKn~~--s~~~~~l~~l~~~~rllLTgTPl 467 (1018)
..+|||||+|++.... ..+...+.......++++|++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4689999999983322 22333344555667788888653
No 283
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.17 E-value=3.3 Score=46.04 Aligned_cols=45 Identities=24% Similarity=0.264 Sum_probs=27.8
Q ss_pred ccccCCcceEEEEcccccc-cCcccHHH---HHHHhccccc--EEEEecCC
Q 001750 422 ASLKPIKWQCMIVDEGHRL-KNKDSKLF---SSLKQYSTRH--RVLLTGTP 466 (1018)
Q Consensus 422 ~~l~~i~w~~lIvDEaHrl-Kn~~s~~~---~~l~~l~~~~--rllLTgTP 466 (1018)
..|+.+.-.+|||||.|++ .+...+.. .+|+.+.... -+.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4566677889999999996 44444333 3444443332 35667876
No 284
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.46 E-value=3.9 Score=49.70 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
|...+..|......+ ...|+.-+.|.|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444443333333 34589999999999999999888764
No 285
>PRK14974 cell division protein FtsY; Provisional
Probab=87.36 E-value=3.5 Score=47.01 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=25.5
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1018)
.-+++.-..|.|||.++..++..+...+. +++++..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~ 176 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAG 176 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecC
Confidence 34668889999999988888877765443 5555543
No 286
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=87.35 E-value=7.3 Score=47.58 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechh----hHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEE
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQ----HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~----~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~L 681 (1018)
.|||..+..--+-...+.|..+.+...-- +..+-+.++|.-.|+.+..++|++++..|.+++.+..++..+ ++
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---iv 369 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IV 369 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EE
Confidence 57776554333334456788888877642 345667788888899999999999999999999999665544 89
Q ss_pred eecccc-cccccCCCCCEEEEEcC
Q 001750 682 LSTRAG-GLGINLATADTVIIYDS 704 (1018)
Q Consensus 682 lstrag-g~GINL~~ad~VIi~D~ 704 (1018)
|.|.|+ -..+++...-.||+=+-
T Consensus 370 VGTHALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred EEcchhhhcceeecceeEEEEecc
Confidence 999997 77888888888877543
No 287
>PRK08116 hypothetical protein; Validated
Probab=87.26 E-value=4.2 Score=44.94 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=31.0
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~ 346 (1018)
+.+.+|.-+.|+|||..+.+++..+...+ .+++++.-..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHH
Confidence 45689999999999999999999987663 3565554333333
No 288
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=87.21 E-value=2.2 Score=53.36 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=87.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC-CccHHHHHHHHHHHcCCCeEEE
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVVM 363 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~~W~~E~~~~~p~~~vv~ 363 (1018)
.|-.-|+.|+--. .....-.++---.|+|||.+...++..|...+. .+|+.+= .+.+.|----+..+. +. ++
T Consensus 669 ~LN~dQr~A~~k~---L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk-kVLLtsyThsAVDNILiKL~~~~--i~-~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKA---LAAEDYALILGMPGTGKTTTISLLIKILVALGK-KVLLTSYTHSAVDNILIKLKGFG--IY-IL 741 (1100)
T ss_pred hcCHHHHHHHHHH---HhccchheeecCCCCCchhhHHHHHHHHHHcCC-eEEEEehhhHHHHHHHHHHhccC--cc-ee
Confidence 5888999997433 233333444455899999988888888776653 5555554 577777766665543 22 22
Q ss_pred EecChHH-HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccC
Q 001750 364 YVGTSQA-RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1018)
Q Consensus 364 y~g~~~~-r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn 442 (1018)
-.|.... -..++++... .....+ ....-........||.+|--.+. ...|..-.||++|||||-.+--
T Consensus 742 RLG~~~kih~~v~e~~~~-~~~s~k--------s~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLT-NETSEK--------SYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ecCCccccchHHHHHhcc-cccchh--------hHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc
Confidence 2343322 2233333210 000000 00000001122345555543332 3345555799999999976532
Q ss_pred cccHHHHHHHhcccccEEEEecCCCC
Q 001750 443 KDSKLFSSLKQYSTRHRVLLTGTPLQ 468 (1018)
Q Consensus 443 ~~s~~~~~l~~l~~~~rllLTgTPlq 468 (1018)
--.|-.+....++.|-|-+.|
T Consensus 811 -----P~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 811 -----PLCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred -----chhhhhhhhcceEEEeccccc
Confidence 234455667788888887644
No 289
>PF13173 AAA_14: AAA domain
Probab=87.14 E-value=3.9 Score=39.51 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHh
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLF 329 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~ 329 (1018)
++-.+|.-..|.|||..+..++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678999999999998888887765
No 290
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=87.12 E-value=2.1 Score=47.16 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhcC--CCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 289 YQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 289 yQ~egv~wl~~~~~~--~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
+|-..|+-|...... ..+.++.-+.|+|||-++++|...|+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 788888777655444 3467888999999999999999998763
No 291
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.10 E-value=5.2 Score=46.89 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|...+.++ ...|+.-+.|+|||..|..+...+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444445555555554 346789999999999999999988654
No 292
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=87.08 E-value=4 Score=51.78 Aligned_cols=59 Identities=14% Similarity=0.008 Sum_probs=43.8
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1018)
+..|-+-|.+++..+. ..++-++|....|+|||...-+++..+... ..++++++|+...
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~-g~~V~~~ApTg~A 408 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAA-GYRVIGAALSGKA 408 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhC-CCeEEEEeCcHHH
Confidence 3568999999998763 234568999999999998877766555443 2478888997654
No 293
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.93 E-value=3.8 Score=50.53 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
|...+..|...+..+. ..|+.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555556655555443 2489999999999999999988864
No 294
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=86.92 E-value=0.42 Score=54.62 Aligned_cols=50 Identities=26% Similarity=0.601 Sum_probs=36.7
Q ss_pred cccccccccc-----CCCeEecCCCCccccccccCCCC-CCCCC-------CCCCccccCCCC
Q 001750 50 KDDSCQACGE-----SENLMSCDTCTYAYHAKCLVPPL-KAPPS-------GSWRCPECVSPL 99 (1018)
Q Consensus 50 ~~~~C~~C~~-----~~~l~~C~~C~~~~H~~Cl~p~l-~~~p~-------~~W~C~~C~~~~ 99 (1018)
.-.+|-||-. .|+++.||.|+-..|-.|..--- ..+|+ ..|||..|.+..
T Consensus 118 k~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv 180 (707)
T KOG0957|consen 118 KAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV 180 (707)
T ss_pred cceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCC
Confidence 3458999964 46799999999999999984320 12332 459999999754
No 295
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=86.69 E-value=5.2 Score=45.25 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=38.9
Q ss_pred CChhHHHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
.++|+|...-..|...+..++ ..++....|+||+..|..|...+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 477888888877777665554 578999999999999999999987654
No 296
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=86.69 E-value=0.32 Score=48.37 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=33.9
Q ss_pred ccccccc------CCCeEecCCCCccccccccCCCCCC------CCCCC--CCccccCCCCC
Q 001750 53 SCQACGE------SENLMSCDTCTYAYHAKCLVPPLKA------PPSGS--WRCPECVSPLN 100 (1018)
Q Consensus 53 ~C~~C~~------~~~l~~C~~C~~~~H~~Cl~p~l~~------~p~~~--W~C~~C~~~~~ 100 (1018)
.|.+|+. .|.|+.|.+|..+||..||.|.-.. +..++ ..|..|.....
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~ 62 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAH 62 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhh
Confidence 4777853 2459999999999999999875422 22333 47888886543
No 297
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.63 E-value=4.1 Score=49.17 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~--~-~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|......+. . .++.-+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4444555544444443 2 3999999999999999999888654
No 298
>PRK08727 hypothetical protein; Validated
Probab=86.57 E-value=3.2 Score=44.84 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=22.7
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
...+|.-+.|+|||..+.++...+...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3489999999999998888887766543
No 299
>PF13245 AAA_19: Part of AAA domain
Probab=86.31 E-value=1.9 Score=37.87 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcC---CCCceEEEeCCccHHH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRN 347 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~---~~~p~LIV~P~s~l~~ 347 (1018)
+.-+++.-..|+|||.+++..+.++... ...++||++|+....+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 4446669999999999999988888742 2348999999765533
No 300
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.26 E-value=4.4 Score=46.27 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=34.4
Q ss_pred ChhHHHHHHHHHHHhhcC-CCceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 286 LHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~-~~~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
++|+|...-+-|...-.+ ....++.-..|.|||..|..|...+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 467777776666554222 33556889999999999999999987654
No 301
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.25 E-value=3.5 Score=50.99 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|...+..+ ...|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 444555555544444 355899999999999999999998754
No 302
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=86.24 E-value=4.5 Score=48.27 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=24.0
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCCCC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGERIS 334 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~~~ 334 (1018)
...+|.-+.|+|||..+-++...+....++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~ 178 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPN 178 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCC
Confidence 457899999999999998888877665433
No 303
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=86.13 E-value=5.4 Score=48.85 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.8
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..|+.-+.|+|||..|-.|...+...
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45779999999999999998887644
No 304
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.09 E-value=4.6 Score=48.50 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCccHHHHHHHHHHHHhc
Q 001750 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~--~-~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
|...+..|......+. + .++.-+.|.|||..|..+...+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4445555555555443 3 468999999999999888887754
No 305
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.07 E-value=4.2 Score=46.46 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=38.6
Q ss_pred CChhHHHHHHHHHHHhhcCCC---ceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~---~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
.++|+|...-..|...+..++ ..+++-+.|+||+..|.+|..++....
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 467888888877777766644 467999999999999999999997643
No 306
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.93 E-value=4.8 Score=46.83 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=28.1
Q ss_pred cceEEEEcccccccCcc---cHHHHHHHhcc-cccEEEEec--CCCC
Q 001750 428 KWQCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTG--TPLQ 468 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn~~---s~~~~~l~~l~-~~~rllLTg--TPlq 468 (1018)
.-++++||-.|.+.+.. -.++..+..+. ....|+||+ +|-+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 34689999999998763 34555555554 345899998 6743
No 307
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=85.83 E-value=2 Score=52.30 Aligned_cols=129 Identities=15% Similarity=0.209 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcCCCC-ceEEEeCC-ccHHHHHHH----HHHHcCCCeEEEEecChHHHHHHHH
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWERE----FATWAPQMNVVMYVGTSQARNIIRE 376 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~-p~LIV~P~-s~l~~W~~E----~~~~~p~~~vv~y~g~~~~r~~i~~ 376 (1018)
+.+-.+..-.==-|||..+.+.|..+.....+ .+++++|. ++...--.| +++|+|...+....|. .| .
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~ 326 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-S 326 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-E
Confidence 44455666667789999887777766544334 88999994 444444444 4567765444333331 11 1
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccCcccHHHHHH--Hhc
Q 001750 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSL--KQY 454 (1018)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l--~~l 454 (1018)
+.++++ .+..+...|- .....++...++++||||||-++.. .+...+ ..-
T Consensus 327 --i~f~nG--------------------~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~ 378 (738)
T PHA03368 327 --FSFPDG--------------------SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQ 378 (738)
T ss_pred --EEecCC--------------------CccEEEEEec----cCCCCccCCcccEEEEechhhCCHH--HHHHHHHHHhc
Confidence 111111 0112232211 2345567779999999999998762 222222 112
Q ss_pred ccccEEEEecC
Q 001750 455 STRHRVLLTGT 465 (1018)
Q Consensus 455 ~~~~rllLTgT 465 (1018)
.....|.+|.|
T Consensus 379 ~n~k~I~ISS~ 389 (738)
T PHA03368 379 TNCKIIFVSST 389 (738)
T ss_pred cCccEEEEecC
Confidence 34566777765
No 308
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.35 E-value=5.4 Score=46.88 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=25.7
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcCCCC-ceEEE
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVV 339 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~~~~-p~LIV 339 (1018)
..+|.-..|+|||..+-++...+.....+ .++.+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 46899999999999998888887665433 44444
No 309
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.31 E-value=4.4 Score=49.75 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=27.4
Q ss_pred HHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 294 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 294 v~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
+..|...+.++ ...|+.-+.|+|||..|..|...+...
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 34444444443 356789999999999999999888653
No 310
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=85.25 E-value=1.9 Score=51.78 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=72.3
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCC-ceEEEeCC-ccH----HHHHHHHHHHcCCCeEEEEecChHHHHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STL----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~-p~LIV~P~-s~l----~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~ 375 (1018)
.++-.+.| -+=-=|||...+++|..++..-.+ .+..|+-. ++. ..-...+.+|+|.-+++.-.|..-
T Consensus 201 KQkaTVFL-VPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI------ 273 (668)
T PHA03372 201 KQKATVFL-VPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVI------ 273 (668)
T ss_pred hccceEEE-ecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEE------
Confidence 33333433 355678999999999888875545 77778773 333 334455678998766543222110
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccCcccHHHHHHHhcc
Q 001750 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS 455 (1018)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~ 455 (1018)
-+.++ ..+.-++..| ....+.++...|++|+|||||-++...=...--+...+
T Consensus 274 --~~s~p---------------------g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~ 326 (668)
T PHA03372 274 --SIDHR---------------------GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQN 326 (668)
T ss_pred --EEecC---------------------CCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhccc
Confidence 01111 1111222222 12345677889999999999988654322222223334
Q ss_pred cccEEEEecC
Q 001750 456 TRHRVLLTGT 465 (1018)
Q Consensus 456 ~~~rllLTgT 465 (1018)
....+.+|.|
T Consensus 327 ~~KiIfISS~ 336 (668)
T PHA03372 327 TTKIIFISST 336 (668)
T ss_pred CceEEEEeCC
Confidence 4455666655
No 311
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.54 E-value=4.8 Score=46.63 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.9
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~ 352 (1018)
..+.-++|.-++|.|||..++.++..+...+ +++|+|.-.....|.....
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~EEs~~qi~~Ra 129 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSGEESPEQIKLRA 129 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCcCHHHHHHHH
Confidence 4556678999999999999998887765542 4788887655555544333
No 312
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.44 E-value=6.4 Score=47.65 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=71.5
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhh-CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEee
Q 001750 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1018)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Lls 683 (1018)
..|||......++....+.|.+|||.+........+.+.|+. .|..+..++|.++..+|..+..+...+.. .|++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~---~IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEI---LVVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCC---CEEEC
Confidence 368999988888888888899999999998877766666654 47789999999999998887776654333 36777
Q ss_pred cccccccccCCCCCEEEEEc
Q 001750 684 TRAGGLGINLATADTVIIYD 703 (1018)
Q Consensus 684 tragg~GINL~~ad~VIi~D 703 (1018)
|++.- =+-+.....||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 87632 23455667777765
No 313
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=84.40 E-value=7.9 Score=47.58 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC-ccHHH
Q 001750 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRN 347 (1018)
Q Consensus 288 ~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~ 347 (1018)
|+=++-++-+...+.+.-.++++ +=|-|||..+..++..+.......++|.+|. ++...
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~e 231 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLT 231 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHH
Confidence 44455566666666666666655 5899999888766666654222478899994 44433
No 314
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=84.28 E-value=2.8 Score=44.05 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=30.2
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC-CccHHHHHHHHHHHc
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWA 356 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~~W~~E~~~~~ 356 (1018)
.+|.-.+|.|||.++.-+.+++...+ .++.+|+- ..-+ -=..+++.|+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~-~~v~lis~D~~R~-ga~eQL~~~a 52 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG-KKVALISADTYRI-GAVEQLKTYA 52 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEESTSST-HHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc-ccceeecCCCCCc-cHHHHHHHHH
Confidence 46788999999999988888887663 34555544 3332 2233444444
No 315
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.85 E-value=4 Score=48.59 Aligned_cols=41 Identities=15% Similarity=-0.010 Sum_probs=27.7
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCCCC-ceEEEeCCccH
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTL 345 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~~~-p~LIV~P~s~l 345 (1018)
...+|.-+.|+|||..+-++...+.....+ .++.|.+...+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 457899999999998888877776554333 44444443333
No 316
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=83.76 E-value=1.4 Score=34.72 Aligned_cols=42 Identities=12% Similarity=0.474 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCCchhhhccccc-CCCHHHHHHHHH
Q 001750 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLK-QKSYEEIREYLT 1011 (1018)
Q Consensus 968 Gf~~~~r~~f~~~~~~~g~~~~~~~~~~~~l~-~ks~~e~~~y~~ 1011 (1018)
-||..+-..|+++|.+||.+. |..|...+. ++|..+++.+-.
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~--W~~Ia~~~~~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDN--WKKIAKRMPGGRTAKQCRSRYQ 45 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTH--HHHHHHHHSSSSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcH--HHHHHHHcCCCCCHHHHHHHHH
Confidence 388999999999999999773 577888999 999999987643
No 317
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.65 E-value=6.1 Score=42.26 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=24.1
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..+...+|.-+.|+|||..+.++...+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 445679999999999999988887766443
No 318
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=83.61 E-value=10 Score=46.34 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 292 egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
..+..|...+..+ ...|+.-+.|.|||..|..+...+....
T Consensus 23 ~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 23 LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3344444444443 3467999999999999999999886543
No 319
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.56 E-value=5.3 Score=48.91 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.4
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..|+.-+.|.|||..|.+++..+...
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccc
Confidence 36899999999999999999888653
No 320
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=83.54 E-value=5.6 Score=49.67 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|-..+.-|......+ ...|+.-+.|.|||..|-.++..+...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 333444444444443 235899999999999999998887653
No 321
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=83.19 E-value=4.3 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.2
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHH
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~ 327 (1018)
.-.+.||.-..|.|||..|-.+..+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999877555544
No 322
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=83.11 E-value=2.5 Score=47.16 Aligned_cols=54 Identities=20% Similarity=0.138 Sum_probs=39.8
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC---CCceEEEeCCccH
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL 345 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l 345 (1018)
|.+-|..+|++ ..+..++-...|+|||.+.+.-+.+++..+ +..+|+|+++...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45778888873 467777777899999999999888887654 3478999997654
No 323
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=83.03 E-value=6.8 Score=50.83 Aligned_cols=59 Identities=14% Similarity=-0.025 Sum_probs=40.9
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1018)
|..|.+-|.+++..+. ..+.-++|.-..|+|||.+.-+++. +.......++.++|+..-
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~~~~-~~e~~G~~V~~~ApTGkA 402 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGVARE-AWEAAGYEVRGAALSGIA 402 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHHHH-HHHHcCCeEEEecCcHHH
Confidence 4579999999998663 3244578999999999987544433 333322367888887654
No 324
>PRK04132 replication factor C small subunit; Provisional
Probab=83.02 E-value=4.2 Score=51.70 Aligned_cols=48 Identities=15% Similarity=0.321 Sum_probs=30.8
Q ss_pred cceEEEEcccccccCc-ccHHHHHHHhcccccEEEEecCCCCCCHHHHH
Q 001750 428 KWQCMIVDEGHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF 475 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn~-~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~ 475 (1018)
++.++|+||||++-.. ...+.+.+.......+++|+.++...-+.-|.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr 678 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 678 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh
Confidence 4678999999999532 33444555555567788888877543333333
No 325
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=82.87 E-value=2.3 Score=32.19 Aligned_cols=42 Identities=12% Similarity=0.462 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhhhcccccCCCHHHHHHHHHH
Q 001750 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTE 1012 (1018)
Q Consensus 969 f~~~~r~~f~~~~~~~g~~~~~~~~~~~~l~~ks~~e~~~y~~~ 1012 (1018)
||..+...|++++.+||... |..+++.+.++|..+++.+...
T Consensus 2 Wt~eE~~~l~~~~~~~g~~~--w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKNN--WEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCHHHHHHHHHHHHHHCcCC--HHHHHhHcCCCCHHHHHHHHHH
Confidence 78999999999999999754 5678888999999999988654
No 326
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=82.75 E-value=0.64 Score=47.69 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=25.8
Q ss_pred ccccEEEccHHHHhhccc--ccc--CCcceEEEEcccccccC
Q 001750 405 IKFDVLLTSYEMINLDSA--SLK--PIKWQCMIVDEGHRLKN 442 (1018)
Q Consensus 405 ~~~~VvitTye~l~~d~~--~l~--~i~w~~lIvDEaHrlKn 442 (1018)
...+|||++|..+..... .+. ..+-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 467899999999865422 121 23446899999999854
No 327
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=82.49 E-value=11 Score=47.21 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHH----HHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEE
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ld----iL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~L 681 (1018)
.|||.....-.+-.....|.+++|.+....... .+..++...|+++..++|+++..+|..+++...++..+ ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 578876543333333456889999998766544 44555555689999999999999999999888665443 56
Q ss_pred eecccc-cccccCCCCCEEEEEcCC
Q 001750 682 LSTRAG-GLGINLATADTVIIYDSD 705 (1018)
Q Consensus 682 lstrag-g~GINL~~ad~VIi~D~d 705 (1018)
++|.+. -..+.+.....||+=+-+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 777664 445777788877776554
No 328
>PRK05580 primosome assembly protein PriA; Validated
Probab=82.44 E-value=8.8 Score=48.26 Aligned_cols=95 Identities=11% Similarity=0.109 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhh-CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeec
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llst 684 (1018)
.|||......++......|.++||.+........+.+.|.. .|..+..++|+++..+|.+...+...+.. .++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~---~IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEA---KVVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCC---CEEEec
Confidence 58898888777777777899999999998877766666654 47889999999999998888777755433 367888
Q ss_pred ccccccccCCCCCEEEEEcC
Q 001750 685 RAGGLGINLATADTVIIYDS 704 (1018)
Q Consensus 685 ragg~GINL~~ad~VIi~D~ 704 (1018)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 7542 355667777777653
No 329
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.44 E-value=7.6 Score=50.05 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhh--cCCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 290 QLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 290 Q~egv~wl~~~~--~~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
|.+-+..++..+ ....+.||.-+.|.|||..+=.+...+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 333455655433 34568999999999999998777776644
No 330
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=82.27 E-value=12 Score=38.63 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.3
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
...+|.-+.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 457899999999999999999988754
No 331
>PRK06893 DNA replication initiation factor; Validated
Probab=82.11 E-value=8.4 Score=41.42 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.8
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
..+|.-..|+|||..+.++...+...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 458999999999998888887765543
No 332
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=81.94 E-value=0.5 Score=41.99 Aligned_cols=43 Identities=28% Similarity=0.704 Sum_probs=29.3
Q ss_pred ccccccCCC---eEecCCCCccccccccCCCCCCCCCCCCCccccCCC
Q 001750 54 CQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1018)
Q Consensus 54 C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1018)
|..|.-+|+ ++.+ .|...||+.|+..-+... ...=.||-|..+
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 344444454 4544 499999999998777654 334589999864
No 333
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.57 E-value=15 Score=42.42 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=29.0
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcC-CCCceEEEeC
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~-~~~p~LIV~P 341 (1018)
..++..+|.-.+|.|||.++..++..+... +..++.+|+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 456778899999999999998888776433 3335555554
No 334
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.46 E-value=8 Score=45.75 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.4
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1018)
..++++-..|.|||.++..++.++...+..+.||-+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4567889999999999998888887655434444443
No 335
>PRK11054 helD DNA helicase IV; Provisional
Probab=81.36 E-value=6.4 Score=49.34 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=59.7
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC---CCceEEEeCCccHHHHHHH-HHHHcC--
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWERE-FATWAP-- 357 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l~~W~~E-~~~~~p-- 357 (1018)
..|.+-|.++|. ...+++++....|+|||.+.++-+.+|...+ +..+|+++.+....+..++ +....+
T Consensus 195 ~~L~~~Q~~av~------~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVV------NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHh------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 358899999985 2345566777799999999999999988643 2379999998877776665 555443
Q ss_pred CCeEEEEecChHHHHHHHHh
Q 001750 358 QMNVVMYVGTSQARNIIREY 377 (1018)
Q Consensus 358 ~~~vv~y~g~~~~r~~i~~~ 377 (1018)
.+.+.++|+- ...+++++
T Consensus 269 ~v~v~TFHSl--al~Il~~~ 286 (684)
T PRK11054 269 DITARTFHAL--ALHIIQQG 286 (684)
T ss_pred CcEEEeHHHH--HHHHHHHh
Confidence 3445555543 23455543
No 336
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.30 E-value=8.3 Score=47.66 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...+..|...+.++ ...|+.-..|.|||..|..|...+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 555666666665554 346799999999999999999888653
No 337
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.10 E-value=11 Score=43.79 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHhh---cCCCceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 287 HPYQLEGLNFLRFSW---SKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 287 ~~yQ~egv~wl~~~~---~~~~~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
|+-|++-+.-....+ ....+++|.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 556666553333222 2346789999999999999998888776543
No 338
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=80.82 E-value=8.3 Score=45.83 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=26.5
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCCCC-ceEEEe
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVA 340 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~~~-p~LIV~ 340 (1018)
...+|.-+.|+|||..+-++...+....++ .++.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 358899999999999988888877655433 444443
No 339
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=80.67 E-value=5.3 Score=43.75 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHH
Q 001750 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1018)
Q Consensus 287 ~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~ 353 (1018)
.-.++..+.-+...+.++.|.+|.-..|.|||..|+|+...+. ....+++++.-..++.+.+..+.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHh
Confidence 3345555544444446889999999999999999999999998 33336777765666666655543
No 340
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=80.39 E-value=7.7 Score=48.52 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=87.0
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhCcccccCCCCCCccccHHHHHHHHhhhhHHHHHHH
Q 001750 536 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 615 (1018)
Q Consensus 536 v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~k 615 (1018)
....+++.|...+..|.... -+.+++|+.++. .|||..+...
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~GvT---------------GSGKTEvYl~ 236 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGVT---------------GSGKTEVYLE 236 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCCC---------------CCcHHHHHHH
Confidence 35678889988888775441 245778887754 7999999999
Q ss_pred HHHHHHHhCCeEEEEechhhHHHHHHHHHhh-CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccc
Q 001750 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1018)
Q Consensus 616 lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstrag 687 (1018)
++.....+|+.|||...-......+.+.|+. -|.++..++++.+..+|...-.+...+.. .++|.||++
T Consensus 237 ~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~---~vVIGtRSA 306 (730)
T COG1198 237 AIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA---RVVIGTRSA 306 (730)
T ss_pred HHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc---eEEEEechh
Confidence 9999999999999999988877766666643 47899999999999999998888865433 467777763
No 341
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.34 E-value=20 Score=44.16 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 292 egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..+..|......+ ...|+.-+-|.|||..+..++..+...
T Consensus 23 ~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 23 HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 3334444333443 234899999999999999999888653
No 342
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=79.72 E-value=7.2 Score=42.15 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=33.0
Q ss_pred cCCC-ceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHH------HHHHHHHH
Q 001750 302 SKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR------NWEREFAT 354 (1018)
Q Consensus 302 ~~~~-~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~------~W~~E~~~ 354 (1018)
..++ -+.+.-+.|+|||+..=+++..+.. ....+|+.|+.++. -|..++..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE--DQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC--CceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 3444 5678899999999998855555432 22455788876653 36555543
No 343
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=79.65 E-value=2.2 Score=44.06 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=28.5
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEe
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1018)
.++.|.+|.-.+|.|||..|.+++..+...+ .+++++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~ 82 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFIT 82 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEee
Confidence 6678999999999999999999999888744 2555553
No 344
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=79.42 E-value=3.6 Score=31.68 Aligned_cols=44 Identities=14% Similarity=0.453 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCCchhhhcccccCCCHHHHHHHHHHH
Q 001750 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTEL 1013 (1018)
Q Consensus 968 Gf~~~~r~~f~~~~~~~g~~~~~~~~~~~~l~~ks~~e~~~y~~~~ 1013 (1018)
.||..+...|++++..||.++| ..+...+.++|..+++.+...+
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~~~w--~~Ia~~~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 3 EWTEEEDELLIELVKKYGKNNW--EKIAKELPGRTAEQCRERWNNL 46 (49)
T ss_pred CCCHHHHHHHHHHHHHHCcCCH--HHHHHHcCCCCHHHHHHHHHHH
Confidence 5899999999999999998554 6688889999999998876544
No 345
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=79.31 E-value=1.3 Score=57.37 Aligned_cols=49 Identities=41% Similarity=1.155 Sum_probs=42.7
Q ss_pred ccccccccccCCC--eEecCCCCccccccccCCCCCCCCCCCCCccccCCC
Q 001750 50 KDDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1018)
Q Consensus 50 ~~~~C~~C~~~~~--l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1018)
....|..|..+.. ++.|+.|...||..|+.|++..++.++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3466999987764 349999999999999999999999999999999864
No 346
>PRK04195 replication factor C large subunit; Provisional
Probab=79.28 E-value=15 Score=44.13 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=29.1
Q ss_pred ChhHHHHHH-HHHHHhhcC---CCceEEEcCCCccHHHHHHHHHHHH
Q 001750 286 LHPYQLEGL-NFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASL 328 (1018)
Q Consensus 286 L~~yQ~egv-~wl~~~~~~---~~~~ILaDemGlGKTiqai~~l~~l 328 (1018)
.++.+...+ .|+ ..|.+ ...++|.-+.|+|||..+-+++..+
T Consensus 18 g~~~~~~~l~~~l-~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWI-ESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHH-HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 344555555 444 34444 4678999999999999888877764
No 347
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=79.05 E-value=1.2 Score=35.98 Aligned_cols=30 Identities=27% Similarity=0.862 Sum_probs=25.7
Q ss_pred ccccccccc----CCCeEecCCCCccccccccCC
Q 001750 51 DDSCQACGE----SENLMSCDTCTYAYHAKCLVP 80 (1018)
Q Consensus 51 ~~~C~~C~~----~~~l~~C~~C~~~~H~~Cl~p 80 (1018)
...|.+|+. +++++.|..|...||-.|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 456999986 577999999999999999854
No 348
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=78.94 E-value=10 Score=46.58 Aligned_cols=26 Identities=27% Similarity=0.098 Sum_probs=21.5
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..+|.-..|+|||..+-++..++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~ 341 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRL 341 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 47899999999999888888777553
No 349
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=78.79 E-value=7.5 Score=43.75 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=25.2
Q ss_pred CCCc-eEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 303 KQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 303 ~~~~-~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
+... .+|..+.|.|||..|.++...+....
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 3445 88999999999999999999998654
No 350
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=78.73 E-value=11 Score=40.22 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=25.5
Q ss_pred cceEEEEcccccccCcc---cHHHHHHHhcc-cccEEEEec
Q 001750 428 KWQCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTG 464 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn~~---s~~~~~l~~l~-~~~rllLTg 464 (1018)
..++||||..|.+.+.. ..++..+..+. ....+++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 45799999999998764 24444555443 456777777
No 351
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=78.52 E-value=10 Score=42.95 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
|-+++..|......+ ..-++.-+.|.||+..|.+|+..++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 555666666666555 4678999999999999999999987654
No 352
>PRK05642 DNA replication initiation factor; Validated
Probab=78.11 E-value=9.4 Score=41.22 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=24.8
Q ss_pred eEEEEcccccccCcc---cHHHHHHHhcc-cccEEEEecC
Q 001750 430 QCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTGT 465 (1018)
Q Consensus 430 ~~lIvDEaHrlKn~~---s~~~~~l~~l~-~~~rllLTgT 465 (1018)
++||+|+.|.+.+.. ..++..+..+. ....+++|+|
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 579999999886543 33555555544 3567888887
No 353
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=77.89 E-value=13 Score=44.43 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|-..+.+|......+ ...|+.-+.|.|||..|..++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 445566665555544 346789999999999999999988754
No 354
>PRK13342 recombination factor protein RarA; Reviewed
Probab=77.71 E-value=12 Score=44.16 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=19.9
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l 328 (1018)
..+.||.-+.|+|||..|-.+...+
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999998887766543
No 355
>PRK10865 protein disaggregation chaperone; Provisional
Probab=77.29 E-value=11 Score=48.80 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHHHHhh--cCCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 294 LNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 294 v~wl~~~~--~~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
+..++..+ ....+.||.-+.|.|||..+-++...+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 55555433 34668999999999999999888877654
No 356
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=76.98 E-value=3.2 Score=52.50 Aligned_cols=111 Identities=20% Similarity=0.241 Sum_probs=70.9
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCC-CCceEEEeCCccH-----HHHHHHHHHHcCCCeEEEEecChHHHHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l-----~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~ 375 (1018)
....+.++.+.+|.|||+.+-..+....... .+.+.+|+|...+ ..|..-+.. |+++++-..|+...-
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd---- 1014 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD---- 1014 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC----
Confidence 4566788999999999999855554444443 4599999995433 457655432 466777666653211
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCC----cceEEEEcccccccCc
Q 001750 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVDEGHRLKNK 443 (1018)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i----~w~~lIvDEaHrlKn~ 443 (1018)
.......+++|||++..-......... ....+|+||.|-++..
T Consensus 1015 -------------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 -------------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -------------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 012346689999999874332211111 2356999999988653
No 357
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.85 E-value=0.7 Score=49.33 Aligned_cols=46 Identities=15% Similarity=0.420 Sum_probs=33.8
Q ss_pred cccccccccC---------CCeEecCCCCccccccccCCCCCC---CCCCCCCccccC
Q 001750 51 DDSCQACGES---------ENLMSCDTCTYAYHAKCLVPPLKA---PPSGSWRCPECV 96 (1018)
Q Consensus 51 ~~~C~~C~~~---------~~l~~C~~C~~~~H~~Cl~p~l~~---~p~~~W~C~~C~ 96 (1018)
...|.+|-++ ..+++|..|..++|++|+.-+..- +-.-.|.|..|.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 3558888654 239999999999999999544322 224579999987
No 358
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=76.70 E-value=20 Score=39.63 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=30.0
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC-C---ccHHHHHH
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWER 350 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P-~---s~l~~W~~ 350 (1018)
.+....+.-..|.|||..+..+...+...+ ..+.+|.- . ..+.||..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~ 124 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQD 124 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHH
Confidence 345677888999999998877776665433 34544444 2 24455653
No 359
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=75.86 E-value=9.2 Score=45.47 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=26.0
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEe
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1018)
...+|.-+.|+|||..+-++...+...+ .+++.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG-GKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEee
Confidence 4578999999999999988888876542 3444443
No 360
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=75.42 E-value=15 Score=46.35 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHH----HHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEE
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHML----DLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~l----diL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~L 681 (1018)
.|||.....-.+-.....|.+++|.+...... +.+..++...|+++..++|+++..+|..++.....+... ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 58887654444333445788999999876654 455566666789999999999999999999988665443 67
Q ss_pred eeccc-ccccccCCCCCEEEEEcCC
Q 001750 682 LSTRA-GGLGINLATADTVIIYDSD 705 (1018)
Q Consensus 682 lstra-gg~GINL~~ad~VIi~D~d 705 (1018)
+.|.+ ....+.+.....||+=+-+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 77765 3456778888888876554
No 361
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=75.15 E-value=3.8 Score=39.10 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=24.8
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1018)
.+|.-+.|.|||..+-.++..+ ..+++.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----GFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----TSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc----ccccccccccccc
Confidence 3678899999999988887775 1255555555544
No 362
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=74.49 E-value=23 Score=40.98 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=41.1
Q ss_pred ccHHHHhhccccccCCcceEEEEcccccccCcccHHHHHHHhc-----ccccEEEEecCCCCCCHHHHHHHHHhhcCCC
Q 001750 412 TSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY-----STRHRVLLTGTPLQNNLDELFMLMHFLDAGK 485 (1018)
Q Consensus 412 tTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l-----~~~~rllLTgTPlqN~~~EL~~Ll~fL~p~~ 485 (1018)
.+..-+......+.. .++|.||=+-|---+. .....|..+ ....-|.||+|--...+.+++..+..+....
T Consensus 267 ~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~-~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 267 YSPKELAEAIEALRD--CDVILVDTAGRSQYDK-EKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred cCHHHHHHHHHHhhc--CCEEEEeCCCCCccCH-HHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 344444433334433 3788999765421111 122222222 2446789999998888888888888777654
No 363
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=74.28 E-value=1.1 Score=49.61 Aligned_cols=22 Identities=50% Similarity=0.961 Sum_probs=20.4
Q ss_pred hhhhhhhcCCccccccccchHh
Q 001750 131 KQYLVKWKGLSYLHCTWVPEKE 152 (1018)
Q Consensus 131 ~eylVKw~~~Sy~h~~W~~e~~ 152 (1018)
.+|||||+|+..-.+||.|+..
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee~ 85 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEEH 85 (270)
T ss_pred ceeeeecCCCCCccccCCchhh
Confidence 6899999999999999999973
No 364
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=74.10 E-value=21 Score=38.21 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=18.1
Q ss_pred CceEEEcCCCccHHHHHHHHHHHH
Q 001750 305 THVILADEMGLGKTIQSIAFLASL 328 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l 328 (1018)
.++||.-..|+|||..|-.+...+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 468999999999997765555543
No 365
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=74.04 E-value=0.66 Score=58.17 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=41.1
Q ss_pred ccccccccccCCCeEecCC-CCccccc-cccCCC--CCCCCCCCCCccccCCCC
Q 001750 50 KDDSCQACGESENLMSCDT-CTYAYHA-KCLVPP--LKAPPSGSWRCPECVSPL 99 (1018)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~-C~~~~H~-~Cl~p~--l~~~p~~~W~C~~C~~~~ 99 (1018)
+..-|.+|+..+.++||++ |+.+||+ .||+-. -...+++-|+|++|.-..
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 4456999999999999987 9999999 999732 245778899999998544
No 366
>PRK06835 DNA replication protein DnaC; Validated
Probab=73.92 E-value=7.8 Score=44.10 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=36.1
Q ss_pred CCChhHHHHHHHHHH----HhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 284 GSLHPYQLEGLNFLR----FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~----~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
+..+.++..++..+. ..-..+.+.+|.-++|+|||..+.+++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 466777767666432 2222467899999999999999999999887654
No 367
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.74 E-value=2.6 Score=49.37 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=40.6
Q ss_pred cccccccccccCCCeEecCCCCccccccccCCCCCCC-CCCCCCccccCCC
Q 001750 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSP 98 (1018)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~~ 98 (1018)
..+.+|+.|.-+|..+.|+.|.|+||..|+.|--... .+.-|.||.|...
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccccc
Confidence 4568899999999999999999999999998753322 2345999999864
No 368
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.29 E-value=27 Score=44.52 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=30.8
Q ss_pred ChhHHHHHHHH-HHHhhcC--CCce-EEEcCCCccHHHHHHHHHHHHh
Q 001750 286 LHPYQLEGLNF-LRFSWSK--QTHV-ILADEMGLGKTIQSIAFLASLF 329 (1018)
Q Consensus 286 L~~yQ~egv~w-l~~~~~~--~~~~-ILaDemGlGKTiqai~~l~~l~ 329 (1018)
=|+-|.+.|.. |...... ..++ +|.-.+|+|||.++-.++..|.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 47788887744 4333332 2244 4899999999999998887764
No 369
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=73.24 E-value=6.9 Score=39.36 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=37.6
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHH
Q 001750 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL 644 (1018)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L 644 (1018)
..++++.++.+|+.+...+|+||+|.+....+++.|.+.|
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999
No 370
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=72.97 E-value=47 Score=34.64 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=40.1
Q ss_pred cccccCCcceEEEEcccccccCc----ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001750 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1018)
Q Consensus 421 ~~~l~~i~w~~lIvDEaHrlKn~----~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p 483 (1018)
...+.+-.|++||+||.-..-+. ...+...|..-...--+.|||--.+..+.|+..++.-+.+
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 44556678999999998655432 2345555555445567999998655555555555554444
No 371
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=72.59 E-value=1.2 Score=56.82 Aligned_cols=25 Identities=48% Similarity=1.136 Sum_probs=23.0
Q ss_pred hhhhhhhcCCccccccccchHhHHH
Q 001750 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (1018)
Q Consensus 131 ~eylVKw~~~Sy~h~~W~~e~~l~~ 155 (1018)
.+|||||+|.+|-.|||+.+..+..
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~ 324 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAK 324 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhh
Confidence 7999999999999999999987754
No 372
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=72.53 E-value=11 Score=45.35 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=24.0
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
....+++|.-+.|.|||..+-++...+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 34678999999999999998888877643
No 373
>PTZ00293 thymidine kinase; Provisional
Probab=72.42 E-value=10 Score=40.24 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=25.7
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s 343 (1018)
-++.-.||+|||...|-.+..+.. ...+++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 467889999999877776654433 234888888854
No 374
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.14 E-value=49 Score=40.07 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=26.3
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCC-CceEEEe
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVA 340 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~-~p~LIV~ 340 (1018)
..++..+|.-..|.|||..+..++..+...+. ..+.+|.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 34566678889999999998777776654432 3454443
No 375
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=72.07 E-value=65 Score=37.05 Aligned_cols=212 Identities=17% Similarity=0.164 Sum_probs=108.3
Q ss_pred CChhHHHHHHHHHHHhhcC--CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH---HHHHHHHHHHcCCC
Q 001750 285 SLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL---RNWEREFATWAPQM 359 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~--~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l---~~W~~E~~~~~p~~ 359 (1018)
-.|.+|...+.-|...-.- ...++|.-..|+|||..+-.++..+ .-|+..+.+.... .-|+.-+.+-.
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~~--- 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKSQ--- 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHhc---
Confidence 4788999988665332111 1234899999999999988887765 2366777775332 33444443321
Q ss_pred eEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEccccc
Q 001750 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1018)
Q Consensus 360 ~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHr 439 (1018)
..-+.|....-. .+ ....|.-++..++...+. -.--++|+|-|..
T Consensus 82 -~~d~dg~~~~~~--~e--------------------------n~~d~i~~l~q~~~~t~~------d~~~~liLDnad~ 126 (438)
T KOG2543|consen 82 -LADKDGDKVEGD--AE--------------------------NFSDFIYLLVQWPAATNR------DQKVFLILDNADA 126 (438)
T ss_pred -cCCCchhhhhhH--HH--------------------------HHHHHHHHHHhhHHhhcc------CceEEEEEcCHHh
Confidence 111111111000 00 000111111122222111 0112699999999
Q ss_pred ccCcccHHHHHHHhcc-----cccEEEEecCCCCC-------------------CHHHHHHHHHhhcCCCCCChHHHHHH
Q 001750 440 LKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQN-------------------NLDELFMLMHFLDAGKFGSLEEFQEE 495 (1018)
Q Consensus 440 lKn~~s~~~~~l~~l~-----~~~rllLTgTPlqN-------------------~~~EL~~Ll~fL~p~~~~~~~~F~~~ 495 (1018)
+....+-+.+.+..+. ..-++.+++++..+ +.+|+..++..-.|+.+. .+|
T Consensus 127 lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~--~~~--- 201 (438)
T KOG2543|consen 127 LRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRK--LDV--- 201 (438)
T ss_pred hhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccc--hHH---
Confidence 9988888888777663 24567788777432 344444444444443221 111
Q ss_pred HhchhhHHHHHHHHHHhhhHHH--HHHH---hhHhhcCCCcEEEEEEecCCHHH-HHHHHHH
Q 001750 496 FKDINQEEQISRLHRMLAPHLL--RRVK---KDVMKELPPKKELILRVELSSKQ-KEYYKAI 551 (1018)
Q Consensus 496 ~~~~~~~~~~~~L~~~L~p~~l--RR~k---~dv~~~lP~k~e~iv~v~ls~~Q-~~~Y~~i 551 (1018)
-.+-||-++++|.. |+.. .-.-...|...+-++.-..++-. +.+|+.+
T Consensus 202 --------ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpky~epi~~~~i~~~d~~~L~r~i 255 (438)
T KOG2543|consen 202 --------YAQFLHVLLQVFYMACRDVNELRSLISLAWPKYCEPITKGKIDPTDKARLWRHI 255 (438)
T ss_pred --------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHh
Confidence 12335555555421 1111 11122467777888877888777 3344433
No 376
>PRK11823 DNA repair protein RadA; Provisional
Probab=71.69 E-value=12 Score=44.60 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=38.4
Q ss_pred hcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHH
Q 001750 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1018)
Q Consensus 301 ~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~ 354 (1018)
+..+.-++|.-++|.|||..++.++..+... ..++|.|.-.....+......+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHH
Confidence 3456667899999999999999988876533 3478888876666665544444
No 377
>CHL00095 clpC Clp protease ATP binding subunit
Probab=71.69 E-value=1.8e+02 Score=37.64 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.1
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..+++-++|.|||..|-++...++..
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 35899999999999999988887654
No 378
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=71.25 E-value=32 Score=39.15 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=33.6
Q ss_pred ChhHHHHHHHHHHHhhcCC-CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 286 LHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~-~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
++|+|...-.-+...+.+- ...++.-..|+|||..|..+...+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4677777765555444333 346799999999999999999988754
No 379
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=71.09 E-value=31 Score=34.89 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=37.0
Q ss_pred cccccCCcceEEEEcccccccC----cccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHH
Q 001750 421 SASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1018)
Q Consensus 421 ~~~l~~i~w~~lIvDEaHrlKn----~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~ 479 (1018)
...+..-.+++||+||.=..-+ ....+...+..-....-+.|||--.+..+.|+..++.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VT 150 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVT 150 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceee
Confidence 3345566889999999865533 2235555565555556799999865555555444433
No 380
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=70.83 E-value=11 Score=38.71 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=38.3
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHH
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~ 355 (1018)
.+|+-+.|+|||..++.++......+ .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHc
Confidence 57889999999999999988876543 4889998877777776666654
No 381
>PRK07952 DNA replication protein DnaC; Validated
Probab=70.55 E-value=14 Score=40.23 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHh---hcC-CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHH
Q 001750 288 PYQLEGLNFLRFS---WSK-QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1018)
Q Consensus 288 ~yQ~egv~wl~~~---~~~-~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~ 354 (1018)
+.|..++..+... +.. ..+.+|.-..|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEE----EHHHHHHHHHH
Confidence 3465565554322 222 24789999999999999999999987654 255555 35666666543
No 382
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.50 E-value=2.8 Score=47.36 Aligned_cols=45 Identities=27% Similarity=0.643 Sum_probs=35.8
Q ss_pred cccccccc---CCCeEecCCCCccccccccCCCCCCCCCCCCCccccCCCC
Q 001750 52 DSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1018)
Q Consensus 52 ~~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1018)
+.|.+|-+ .|+.++-=-|...||..|.+|-|... .-+||-|+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 68999986 47766667789999999999987653 33799999743
No 383
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=70.08 E-value=25 Score=34.49 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=26.5
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s 343 (1018)
.+|.-..|.|||..+..++..+... .++++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCc
Confidence 4677889999999999888877553 34666665543
No 384
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=69.99 E-value=8.1 Score=46.39 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC-----CCceEEEeCCccHHHHHHH
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLSTLRNWERE 351 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-----~~p~LIV~P~s~l~~W~~E 351 (1018)
+.+-|-+.+. ..+++-.|+--..|+|||..|+--+++|+-.. .+|+||+.|+-++......
T Consensus 213 IQkEQneIIR-----~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 213 IQKEQNEIIR-----FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred hhHhHHHHHh-----ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 4445555543 24566678888999999999988888886543 2489999999887665443
No 385
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=69.93 E-value=48 Score=37.86 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.2
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..+|.-+.|.|||..+..++..+...
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 46899999999999999998887644
No 386
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=69.31 E-value=32 Score=45.30 Aligned_cols=58 Identities=14% Similarity=-0.019 Sum_probs=42.0
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1018)
..|.+-|.+++..+. ..++-++|.-.-|+|||.+.-++...+... ...++.++|+.--
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G~~V~g~ApTgkA 437 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA-GYRVVGGALAGKA 437 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEcCcHHH
Confidence 579999999998652 445668899999999998776665544333 2477788886543
No 387
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=69.05 E-value=18 Score=46.80 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.4
Q ss_pred HHHHHHHhhc--CCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 293 gv~wl~~~~~--~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
-+..+...++ ...+.||.-+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4556655433 4568999999999999999888777654
No 388
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=68.98 E-value=29 Score=44.11 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
...|.||.-+.|.|||..+-++...+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46689999999999999988888777543
No 389
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=68.98 E-value=7.6 Score=39.82 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=38.8
Q ss_pred cccccCCcceEEEEcccccccCc----ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001750 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1018)
Q Consensus 421 ~~~l~~i~w~~lIvDEaHrlKn~----~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p 483 (1018)
...+..-.|++||+||.-..-+. ...+...|..-....-+.|||.-.+..+.|+..++.-+.+
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 34455668999999998654332 2345555555455567999998655555555444444433
No 390
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.59 E-value=69 Score=39.81 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
|...++-|...+.++ ...|+.-+.|.|||..|..+...+...
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 333344444444443 336899999999999888888877543
No 391
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=67.71 E-value=17 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=20.1
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l 328 (1018)
..+.||.-+.|+|||..|-++...+
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999998887766543
No 392
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=67.07 E-value=25 Score=42.00 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=39.2
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~ 354 (1018)
..+.-.+|+-++|.|||..++.++..+...+ +++|.|.......|......+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCCHHHHHHHHHH
Confidence 4566678999999999999999888776543 478888887666666554444
No 393
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=67.06 E-value=6.7 Score=43.01 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=18.6
Q ss_pred CceEEEcCCCccHHHHHHHHHHHH
Q 001750 305 THVILADEMGLGKTIQSIAFLASL 328 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l 328 (1018)
..++|.-..|||||..|--+...|
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 468999999999997765555544
No 394
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.35 E-value=31 Score=40.53 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=19.2
Q ss_pred ceEEEcCCCccHHHHHHHHHHHH
Q 001750 306 HVILADEMGLGKTIQSIAFLASL 328 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l 328 (1018)
-.++.-..|.|||.++.-++..+
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35688899999999998888755
No 395
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=66.32 E-value=10 Score=46.18 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=40.1
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHh
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (1018)
Q Consensus 283 ~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~ 329 (1018)
+.++++-|++-++-|+.....|+=+|+-.+||+|||+..|.....++
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999766554443
No 396
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=66.06 E-value=27 Score=39.37 Aligned_cols=122 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHHcCCCeEEEEe--cChHHHHHHHHhhhcCCCC
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV--GTSQARNIIREYEFYFPKN 384 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y~--g~~~~r~~i~~~e~~~~~~ 384 (1018)
.++.---|.||| ++|+=|++++.....++|+++--.--.-=..+++.|.-.+.+-++. ...+.-.++.+-
T Consensus 142 il~vGVNG~GKT-TTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDA------- 213 (340)
T COG0552 142 ILFVGVNGVGKT-TTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDA------- 213 (340)
T ss_pred EEEEecCCCchH-hHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHH-------
Q ss_pred chhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccCcccHHHHHHHhcc---------
Q 001750 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS--------- 455 (1018)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~--------- 455 (1018)
...-..-.+++|++|=|-|+ .++..++..|..+.
T Consensus 214 ------------------------------------i~~Akar~~DvvliDTAGRL-hnk~nLM~EL~KI~rV~~k~~~~ 256 (340)
T COG0552 214 ------------------------------------IQAAKARGIDVVLIDTAGRL-HNKKNLMDELKKIVRVIKKDDPD 256 (340)
T ss_pred ------------------------------------HHHHHHcCCCEEEEeCcccc-cCchhHHHHHHHHHHHhccccCC
Q ss_pred cccEEEEe--cCCCCCCHHH
Q 001750 456 TRHRVLLT--GTPLQNNLDE 473 (1018)
Q Consensus 456 ~~~rllLT--gTPlqN~~~E 473 (1018)
++|.++|+ ||-=||.+..
T Consensus 257 ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 257 APHEILLVLDATTGQNALSQ 276 (340)
T ss_pred CCceEEEEEEcccChhHHHH
No 397
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=65.79 E-value=67 Score=37.96 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=24.9
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1018)
..++--.|.|||.++..+..++...+. ++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 458889999999999888887765554 4444443
No 398
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=65.66 E-value=10 Score=47.74 Aligned_cols=65 Identities=18% Similarity=0.118 Sum_probs=46.2
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC-CC--CceEEEeCCcc-HHHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLST-LRNWEREFATW 355 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~-~~--~p~LIV~P~s~-l~~W~~E~~~~ 355 (1018)
.|.+-|.++|. ...+.+++....|+|||.+.+.-+.+|... +. ..+|+|+.+.- -..-..-+...
T Consensus 2 ~Ln~~Q~~av~------~~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVE------FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 47889999986 345677777889999999999999999864 43 36888888533 23333444443
No 399
>PRK05973 replicative DNA helicase; Provisional
Probab=65.58 E-value=16 Score=39.54 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=39.9
Q ss_pred HhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHH
Q 001750 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1018)
Q Consensus 299 ~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~ 354 (1018)
-.+..|.-++|+-..|.|||+.++-|+......+ .+++++.-...-.+-.+.+..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G-e~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG-RTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEEEeCCHHHHHHHHHH
Confidence 3456777889999999999999999988776542 478888765555444444443
No 400
>PRK14873 primosome assembly protein PriA; Provisional
Probab=65.48 E-value=27 Score=43.74 Aligned_cols=93 Identities=17% Similarity=0.074 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHHhhC-C-CcEEEEeCCCChHHHHHHHHHhccCCCCceEEEee
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-K-WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g-~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Lls 683 (1018)
.|||......++......|..+||...-......+...|... | ..+..+++..+..+|.+...+...+. ..++|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~---~~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ---ARVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC---CcEEEE
Confidence 689999999999999999999999999988888777777643 3 67999999999999998877775433 347888
Q ss_pred cccccccccCCCCCEEEEE
Q 001750 684 TRAGGLGINLATADTVIIY 702 (1018)
Q Consensus 684 tragg~GINL~~ad~VIi~ 702 (1018)
||++- =.-+..--.||+-
T Consensus 247 tRSAv-FaP~~~LgLIIvd 264 (665)
T PRK14873 247 TRSAV-FAPVEDLGLVAIW 264 (665)
T ss_pred cceeE-EeccCCCCEEEEE
Confidence 88742 2222333445554
No 401
>CHL00206 ycf2 Ycf2; Provisional
Probab=65.36 E-value=21 Score=48.85 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=32.6
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W 348 (1018)
...+|++|.-.+|+|||..|=|++... .-|++-|.....+..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcc
Confidence 456789999999999999887766642 2388777777777665
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=65.11 E-value=5.7 Score=42.15 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=24.3
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
+-.+.|++-..|.|||..+.++...|+..
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 34578999999999999999888887653
No 403
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=65.10 E-value=0.59 Score=40.35 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=18.1
Q ss_pred ccccccccC----CC--eEecC--CCCccccccccCCCCCCCC-------CCCCCccccCC
Q 001750 52 DSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPP-------SGSWRCPECVS 97 (1018)
Q Consensus 52 ~~C~~C~~~----~~--l~~C~--~C~~~~H~~Cl~p~l~~~p-------~~~W~C~~C~~ 97 (1018)
..|.+|... +. .+.|+ .|...||..||.--+...+ .-.+.||.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 458888742 22 57897 8999999999954332111 12246999975
No 404
>CHL00095 clpC Clp protease ATP binding subunit
Probab=65.00 E-value=24 Score=45.51 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.5
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
...+.||.-+.|.|||..+-++...+..
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999888777654
No 405
>PRK10867 signal recognition particle protein; Provisional
Probab=64.89 E-value=31 Score=40.79 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=26.7
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC-CCCceEEEeC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~-~~~p~LIV~P 341 (1018)
-.++.-..|.|||.++.-++.++... +..+.||-+-
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 35688899999999999998888766 4334444444
No 406
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=64.47 E-value=8.5 Score=43.69 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=34.1
Q ss_pred hcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHH
Q 001750 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1018)
Q Consensus 301 ~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~ 354 (1018)
+....|++|....|+|||..|-++.... ..+|+=|-=.++...|--|-++
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~KWfgE~eK 173 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTSKWFGEAQK 173 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccchhhHHHHHH
Confidence 3577899999999999999887766542 2355544445555667655444
No 407
>PRK10865 protein disaggregation chaperone; Provisional
Probab=64.35 E-value=4.3e+02 Score=34.42 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.7
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
..++.-++|.|||..|-++...++..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 46899999999999998888777643
No 408
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=64.34 E-value=13 Score=42.14 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=34.7
Q ss_pred CCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 281 ~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
+..+.+.+.|.+.+. .+...+.+.|++-.||+|||...-+++..+..
T Consensus 124 v~~g~~~~~~~~~L~---~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 124 VTSKIMTEAQASVIR---SAIDSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHcCCCCHHHHHHHH---HHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344567777765544 44467789999999999999988777776643
No 409
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=63.95 E-value=17 Score=39.96 Aligned_cols=50 Identities=14% Similarity=-0.002 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC
Q 001750 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1018)
Q Consensus 288 ~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1018)
|+...-+..+......+..++|..+.|+|||..|-++...+ ..|++.++=
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~~ 54 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLING 54 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEeC
Confidence 34445555555555788999999999999999998877643 237776643
No 410
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=63.49 E-value=2.2 Score=45.58 Aligned_cols=47 Identities=32% Similarity=0.674 Sum_probs=34.1
Q ss_pred cccccccccC----------CCeEecCCCCccccccccCCCC---CCCCCCCCCccccCC
Q 001750 51 DDSCQACGES----------ENLMSCDTCTYAYHAKCLVPPL---KAPPSGSWRCPECVS 97 (1018)
Q Consensus 51 ~~~C~~C~~~----------~~l~~C~~C~~~~H~~Cl~p~l---~~~p~~~W~C~~C~~ 97 (1018)
..+|--|-++ .+|+.|..|+|+=|++||.-.. ..+-.-.|.|-+|.+
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~ 283 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY 283 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce
Confidence 4567777543 3499999999999999994321 123356899999985
No 411
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=63.41 E-value=42 Score=37.87 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.3
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
-.++..+-|.|||..|..++..+...
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 34899999999999999999888654
No 412
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=63.37 E-value=46 Score=37.15 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=34.0
Q ss_pred CChhHHHHHHHHHHHhhcCCC--ceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~--~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
.|...|-..+..|...+.+++ .++|... |.||+..|..|+..+....
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 456678788887877766654 4555544 6899999999999887654
No 413
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=63.32 E-value=11 Score=47.50 Aligned_cols=64 Identities=20% Similarity=0.149 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC-CCC--ceEEEeCC-ccHHHHHHHHHHH
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPL-STLRNWEREFATW 355 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~-~~~--p~LIV~P~-s~l~~W~~E~~~~ 355 (1018)
|.|-|..+|+ ...+.+++....|+|||.+.+.-+.++... +.. .+|+|+.+ ..-.+-++.+.+.
T Consensus 2 Ln~~Q~~av~------~~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVE------YVTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 6789999986 345778888899999999999999998854 333 57777664 4444555555543
No 414
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.81 E-value=5.2 Score=42.20 Aligned_cols=39 Identities=26% Similarity=0.818 Sum_probs=29.8
Q ss_pred ccccccccccCC--------CeEecCCCCccccccccCCCCCCCCCCCCCccccCC
Q 001750 50 KDDSCQACGESE--------NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1018)
Q Consensus 50 ~~~~C~~C~~~~--------~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1018)
...+|.+|+.++ ....|..|...||..|... =.||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 346688887653 4789999999999999952 13999974
No 415
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=62.23 E-value=28 Score=36.27 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=24.1
Q ss_pred ceEEEEcccccccCcccHHHHHHHhccc--ccEEEEecC
Q 001750 429 WQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGT 465 (1018)
Q Consensus 429 w~~lIvDEaHrlKn~~s~~~~~l~~l~~--~~rllLTgT 465 (1018)
.++|+|||||-+.. .+...|..+.. ...+++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999998744 55566666654 466777764
No 416
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=62.18 E-value=38 Score=40.72 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHHHhhcCCCc------eEEEcCCCccHHHHHHHHHHHH--hcCCC-CceEEEeCCc
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTH------VILADEMGLGKTIQSIAFLASL--FGERI-SPHLVVAPLS 343 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~------~ILaDemGlGKTiqai~~l~~l--~~~~~-~p~LIV~P~s 343 (1018)
..|.|||...+.-|.=.+.++.+ ++|...-|=|||..+.+++.+. +.... ..++|++|.-
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~ 128 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSV 128 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccH
Confidence 57999999998766323333332 5788889999998876655543 33333 3788888853
No 417
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=61.11 E-value=64 Score=37.39 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=34.0
Q ss_pred CChhHHHHHHHHHHHhh-cC--CCceEEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 285 SLHPYQLEGLNFLRFSW-SK--QTHVILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~-~~--~~~~ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
.-|+-|++.+......+ .. ..++++.-.+|+|||.++--++..+....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 35778888774433222 22 34689999999999999888888776543
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=60.92 E-value=48 Score=39.23 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=26.1
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhc-CCCCceEEEeC
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAP 341 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~-~~~~p~LIV~P 341 (1018)
-.+++-..|.|||.++.-++.++.. .+....||-|-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4679999999999999999888763 44334444444
No 419
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=60.74 E-value=4.2 Score=36.66 Aligned_cols=32 Identities=19% Similarity=0.658 Sum_probs=26.9
Q ss_pred cccccccccccC-CCeEecC--CCCccccccccCC
Q 001750 49 AKDDSCQACGES-ENLMSCD--TCTYAYHAKCLVP 80 (1018)
Q Consensus 49 ~~~~~C~~C~~~-~~l~~C~--~C~~~~H~~Cl~p 80 (1018)
.....|..|+.. |-.+.|. .|.+.||+.|..-
T Consensus 34 ~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 34 RRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 345689999998 9999996 5999999999853
No 420
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=60.66 E-value=90 Score=35.41 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=25.0
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEe
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1018)
.-..|.-..|.|||.++..+...+...+ +.++++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~ 149 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAA 149 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 3345777999999999888888776543 3555554
No 421
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=60.25 E-value=76 Score=35.12 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=24.9
Q ss_pred ceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEe
Q 001750 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1018)
Q Consensus 306 ~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1018)
-.++.-..|.|||.++..+...+...+ .++++|.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~ 107 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAA 107 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 355778999999999988888776554 3555554
No 422
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=60.17 E-value=3.9 Score=32.17 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=18.0
Q ss_pred hhhhhhc-cCCCcceeeeeecccc
Q 001750 195 DRILACR-GEDDEKEYLVKYKELS 217 (1018)
Q Consensus 195 erIi~~~-~~~~~~~ylVKW~~L~ 217 (1018)
-+|++.| ..++..+|||-|.|.+
T Consensus 26 ~~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 26 YRVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred eEEEEEEEcCCCcEEEEEEecCcC
Confidence 3677777 5678999999999864
No 423
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.96 E-value=33 Score=40.07 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=36.4
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHHcCCCeEEEEe
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y~ 365 (1018)
.+++-=.|.|||.++.-+..+|...+. .+|+|+--.--+-=...++..+-...|-+|.
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKGK-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcCC-ceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 456777899999999999999888544 4444444333333444455555445555553
No 424
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=59.95 E-value=37 Score=39.61 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=23.4
Q ss_pred hcCCCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 301 ~~~~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
...|..+.|..+.|.|||..+-.+...+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 3678888999999999998766655555443
No 425
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=59.89 E-value=5.8 Score=47.21 Aligned_cols=47 Identities=26% Similarity=0.485 Sum_probs=38.7
Q ss_pred cccccccccccCCCeEecCCCCccccccccCCCCCCCCCCCCCccccCCC
Q 001750 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1018)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1018)
.+.++|.+|.++|.++.|+.|..++|-.|.. ...|.+.|.|..|...
T Consensus 87 ~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~---~~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 87 IEPSECFVCFKGGSLVTCKSRIQAPHRKCKP---AQLEKCSKRCTDCRAF 133 (463)
T ss_pred CCcchhccccCCCccceeccccccccccCcC---ccCcccccCCcceeee
Confidence 3568899999999999999999999999962 4566788888777753
No 426
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=59.49 E-value=13 Score=39.76 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=41.0
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHHc
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~~ 356 (1018)
-.+.-.+|+-+.|+|||+.++.|+..-......++++|+-.....+..+.+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC
Confidence 4566788999999999999999987665541238888888887788888887654
No 427
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=59.40 E-value=14 Score=46.80 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC-C--CCceEEEeCCc-cHHHHHHHHHHHc
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R--ISPHLVVAPLS-TLRNWEREFATWA 356 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~-~--~~p~LIV~P~s-~l~~W~~E~~~~~ 356 (1018)
.|-|-|.++|. ...+.+++....|+|||.+.+.-+.+|... + +..+|+|+.+. ....-+.-+.+..
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 48899999986 446778888899999999999999999864 3 33678888853 3344444444443
No 428
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.23 E-value=25 Score=40.21 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=58.7
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCch
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~ 386 (1018)
+++.-=.|.|||.+..-+++++.+.+.++.||.+-+-- .---..++.|+....+-+|........
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR-agAfDQLkqnA~k~~iP~ygsyte~dp-------------- 168 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR-AGAFDQLKQNATKARVPFYGSYTEADP-------------- 168 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc-cchHHHHHHHhHhhCCeeEecccccch--------------
Confidence 34666789999999888888888887777777665422 222344555554455544432211110
Q ss_pred hhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccCcccH
Q 001750 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSK 446 (1018)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s~ 446 (1018)
| ..+..-...+++-+|++||||=+-|.+-..+.
T Consensus 169 ----------------------v-----~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL 201 (483)
T KOG0780|consen 169 ----------------------V-----KIASEGVDRFKKENFDVIIVDTSGRHKQEASL 201 (483)
T ss_pred ----------------------H-----HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH
Confidence 0 01112234456668999999999888765543
No 429
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=58.94 E-value=3.7 Score=34.04 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=21.0
Q ss_pred chhhhhhhhccCCCcceeeeeecccc
Q 001750 192 TTVDRILACRGEDDEKEYLVKYKELS 217 (1018)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~L~ 217 (1018)
+.+|+||..-...|+..|||||++.+
T Consensus 3 l~~E~Ivg~~d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGATDTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEEECTSSEEEEEEETTSS
T ss_pred CChHHHheeecCCCcEEEEEEECCCC
Confidence 35788888776778999999999976
No 430
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=58.75 E-value=4.5 Score=38.03 Aligned_cols=29 Identities=31% Similarity=0.850 Sum_probs=25.3
Q ss_pred cccccccccC-CCeEecCC--CCccccccccC
Q 001750 51 DDSCQACGES-ENLMSCDT--CTYAYHAKCLV 79 (1018)
Q Consensus 51 ~~~C~~C~~~-~~l~~C~~--C~~~~H~~Cl~ 79 (1018)
...|.+|+.. |-.+.|.. |...||+.|..
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 5679999984 77999988 99999999974
No 431
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=58.71 E-value=19 Score=45.74 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.1
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
...+.||.-+.|.|||..+-++...+..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999998877765544
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=58.42 E-value=57 Score=39.13 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=23.2
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhc-CCCCceEEE
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFG-ERISPHLVV 339 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~-~~~~p~LIV 339 (1018)
+-..|.-..|.|||.++.-+...+.. .+...+.+|
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 33558889999999998877776643 333344433
No 433
>PRK10689 transcription-repair coupling factor; Provisional
Probab=58.37 E-value=85 Score=42.01 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHH----hhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEE
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L----~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~L 681 (1018)
.+||.......+-.....|.+|+|.+..+....-+...+ ...++++..+.|..+..++.+++....++..+ ++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d---IV 707 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID---IL 707 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC---EE
Confidence 567776544333333457889999999877655444444 33456788899999999999888887654333 56
Q ss_pred eeccc-ccccccCCCCCEEEEEc
Q 001750 682 LSTRA-GGLGINLATADTVIIYD 703 (1018)
Q Consensus 682 lstra-gg~GINL~~ad~VIi~D 703 (1018)
+.|.. ....+++.....||+=+
T Consensus 708 VgTp~lL~~~v~~~~L~lLVIDE 730 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIVDE 730 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEEec
Confidence 66653 34456666777776643
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=58.27 E-value=43 Score=36.57 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=19.5
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLAS 327 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~ 327 (1018)
..|..++|.-+.|.|||..+-.++..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 67888899999999999654444433
No 435
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=58.20 E-value=15 Score=40.45 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=29.0
Q ss_pred HHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 295 ~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
.+|......+++++++-++|.|||.+.-+++..+-..
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 4555555678999999999999999988887765444
No 436
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=58.00 E-value=17 Score=46.11 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=46.3
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC-CC--CceEEEeCCc-cHHHHHHHHHHH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLS-TLRNWEREFATW 355 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~-~~--~p~LIV~P~s-~l~~W~~E~~~~ 355 (1018)
.|-|-|.++|. ...+.+++....|+|||.+.+.-+.+|... +. ..+|+|+-+. ....-+.-+.+.
T Consensus 9 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 9 SLNDKQREAVA------APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred hcCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 48899999986 345677888889999999999999999863 33 3588888753 223333334433
No 437
>PRK08939 primosomal protein DnaI; Reviewed
Probab=57.64 E-value=17 Score=41.06 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=32.3
Q ss_pred HHHHHHHhhc--CCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEE
Q 001750 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1018)
Q Consensus 293 gv~wl~~~~~--~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV 339 (1018)
+..|+...-. .+.|.+|.-.+|+|||..+.+++..+...+. +++++
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~ 190 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLL 190 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 4556532211 3567889999999999999999999876543 34444
No 438
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=57.55 E-value=23 Score=39.81 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
+.+-+-|.+ +|......+++.+++-.||+|||..+-+++..+..
T Consensus 115 g~~~~~~~~---~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 115 GIMTAAQRD---VLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCHHHHH---HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 334444443 44455567889999999999999988887776644
No 439
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=56.75 E-value=16 Score=41.91 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.9
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCcc
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~ 344 (1018)
.|+..+|+.+.|+|||..|+++...|-.. -||..++-.-+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~--~PF~~isgSEi 88 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGED--VPFVSISGSEI 88 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTT--S-EEEEEGGGG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCC--CCeeEccccee
Confidence 46788999999999999999998887322 28888776543
No 440
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=56.72 E-value=76 Score=38.16 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=29.3
Q ss_pred hccccccCCcceEEEEcccccccCcccHHHHHHHhcc---cccEEEEecCC
Q 001750 419 LDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLLTGTP 466 (1018)
Q Consensus 419 ~d~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~---~~~rllLTgTP 466 (1018)
.+...+......++|+||+|..++. .++.++..-. .+..++...|+
T Consensus 114 ~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 114 SDADSLDGLNPSLAIFDELHAHKDD--ELYDALESGMGARPNPLIIIISTA 162 (477)
T ss_pred cCCCCccCCCCceEEEeCCCCCCCH--HHHHHHHhhhccCCCceEEEEeCC
Confidence 3455666778899999999999763 3555555432 23344444554
No 441
>CHL00176 ftsH cell division protein; Validated
Probab=56.42 E-value=54 Score=40.92 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.8
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l 328 (1018)
..+++|.-+.|+|||..|=++...+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987776543
No 442
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.60 E-value=60 Score=37.48 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 292 egv~wl~~~~~~~---~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
..+.-+.....++ ...++.-+.|.|||..+-++...+..
T Consensus 24 ~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 24 HITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3344444443443 36789999999999998888776654
No 443
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=55.60 E-value=21 Score=35.37 Aligned_cols=82 Identities=22% Similarity=0.133 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHHH-hh---CCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEE
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L-~~---~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~L 681 (1018)
.+.++.++.+|+.+...+|+||+|++.....++.|.+.| .. .-++..+..+.. ....- ++
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~---------------~~~~P-V~ 74 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP---------------AAGQP-VL 74 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC---------------CCCCC-EE
Confidence 566899999999999999999999999999999999999 22 233333322221 11122 34
Q ss_pred eecccccccccCCCCCEEEEEcCCC
Q 001750 682 LSTRAGGLGINLATADTVIIYDSDW 706 (1018)
Q Consensus 682 lstragg~GINL~~ad~VIi~D~dw 706 (1018)
|+. +..-|...++.+|+++..+
T Consensus 75 l~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 75 LTW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred EEc---CCCCCCCCCcEEEECCCCC
Confidence 441 2224666788888888764
No 444
>PRK06921 hypothetical protein; Provisional
Probab=55.42 E-value=33 Score=37.86 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=28.9
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEe
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1018)
.+.+.+|.-++|+|||..+.+++..+.......++.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 46789999999999999999999888765222444444
No 445
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.34 E-value=51 Score=36.67 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=27.8
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcC-CCCceEEEeC
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~-~~~p~LIV~P 341 (1018)
.+...+|.-.+|.|||.++..++.++... +..++.+|.-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 34556788899999999998888877654 3235555543
No 446
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=54.98 E-value=25 Score=38.74 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhc
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~ 330 (1018)
+.+.|.+.+.++.. ..++.++++-++|.|||...-+++..+..
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 66778888766532 34556889999999999998888877643
No 447
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=54.82 E-value=1.4 Score=34.13 Aligned_cols=39 Identities=28% Similarity=0.663 Sum_probs=26.2
Q ss_pred cccccccC---C-CeEecCCCCccccccccCCCCCCCCCCCCCccccC
Q 001750 53 SCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1018)
Q Consensus 53 ~C~~C~~~---~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 96 (1018)
.|.+|... + .++... |+-.||..|+..-+... -.||.|.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 58888763 3 344444 99999999997655442 2788873
No 448
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.44 E-value=70 Score=40.53 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=23.9
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHh-cCCCCceEEEe
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVA 340 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~-~~~~~p~LIV~ 340 (1018)
++-..|.-..|.|||.++.-+...+. ..+...+.+|.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence 34456899999999988777766553 33333444444
No 449
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=54.40 E-value=35 Score=36.27 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=40.0
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~ 355 (1018)
-.+.-.+|+.+.|.|||..++.++...... ..+++++.......+-.+.+..+
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHc
Confidence 345567889999999999999998776554 35888998877776666666554
No 450
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=54.27 E-value=29 Score=42.88 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCC-----CCceEEEeC-CccHHHHHHHHHHHcCC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAP-LSTLRNWEREFATWAPQ 358 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-----~~p~LIV~P-~s~l~~W~~E~~~~~p~ 358 (1018)
.|..-|+.+...+ ....-.|+.-..|+|||.+++-++..|+... .-|+||||= ++.+.|.-.-+-.. .
T Consensus 378 ildsSq~~A~qs~----ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~--q 451 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSK----LTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH--Q 451 (1025)
T ss_pred eecHHHHHHHHHH----hhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--C
Confidence 4777898887655 3445678999999999999999998887653 239999998 57777776555432 4
Q ss_pred CeEEEEecChHHHHHHHHhhhc
Q 001750 359 MNVVMYVGTSQARNIIREYEFY 380 (1018)
Q Consensus 359 ~~vv~y~g~~~~r~~i~~~e~~ 380 (1018)
-..++..|+......++.+.+.
T Consensus 452 rpsImr~gsr~~spyLk~~n~~ 473 (1025)
T KOG1807|consen 452 RPSIMRQGSRFFSPYLKVHNYL 473 (1025)
T ss_pred CceEEEeccccCCHHHHHHHHH
Confidence 4567777776665666655554
No 451
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=53.81 E-value=18 Score=38.93 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=33.8
Q ss_pred hhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCc
Q 001750 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1018)
Q Consensus 300 ~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s 343 (1018)
.+..|.-.+|+-..|.|||..++.++..+......++|++....
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 45667778999999999999999988877655334777777544
No 452
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=53.81 E-value=37 Score=36.62 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=38.4
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~ 354 (1018)
..+...+++-+.|.|||+.++-|+...... ..+.|+|+-.....+-.+.+..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHH
Confidence 456778899999999999999998876533 2488888876666555555544
No 453
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=53.78 E-value=52 Score=33.91 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=24.2
Q ss_pred EEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC
Q 001750 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1018)
Q Consensus 308 ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1018)
++.-.|++|||...|..+..+...+ .+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~-~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAG-KKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCC-CeEEEEEec
Confidence 5667999999998888776654432 367777774
No 454
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=53.78 E-value=17 Score=38.65 Aligned_cols=41 Identities=32% Similarity=0.451 Sum_probs=26.1
Q ss_pred cceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCH
Q 001750 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~ 471 (1018)
..+.+||||++.+-.. .+.- +........+.|-|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~g--~l~~-l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG--YLLL-LLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCChH--HHHH-HHhhccCcceEEEECchhccC
Confidence 4678999999976331 1112 333444456788899988653
No 455
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=53.24 E-value=3.9e+02 Score=34.75 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.4
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
.++.-++|.|||..|-++...++..
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCC
Confidence 6899999999999998888877643
No 456
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.11 E-value=53 Score=38.15 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=41.5
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHHc
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~~ 356 (1018)
|.-.++.-+.|.||+..-+-++..+.... ++|.|+-.--+.||+-...+..
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~QiklRA~RL~ 143 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIKLRADRLG 143 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHHHHHHHhC
Confidence 44468999999999988777777776555 9999999999999988887764
No 457
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=52.81 E-value=36 Score=37.25 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=41.0
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~ 355 (1018)
..+...++.-.+|+|||+-++-|+...... ..|+|.|+-...-..-.+.+..+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~ 73 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSF 73 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHHc
Confidence 567788999999999999999999988777 24899998866555544444443
No 458
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=52.77 E-value=41 Score=36.21 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=37.6
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHH
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~ 354 (1018)
..+.-.+|.-+.|.|||..++.++..+...+ .+++.++......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHH
Confidence 4567788999999999999999988876543 467777776555544444443
No 459
>PHA00012 I assembly protein
Probab=52.41 E-value=37 Score=38.36 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEcCCCccHHHHHHHHHHHHhcCC
Q 001750 308 ILADEMGLGKTIQSIAFLASLFGER 332 (1018)
Q Consensus 308 ILaDemGlGKTiqai~~l~~l~~~~ 332 (1018)
++.--.|.|||+.|++-|...+..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 4566789999999998777666665
No 460
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=52.27 E-value=82 Score=43.26 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=40.7
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHh---cCCCCceEEEeCCccH
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF---GERISPHLVVAPLSTL 345 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~---~~~~~p~LIV~P~s~l 345 (1018)
.|.+-|.+++..+.. ..++-++|.--.|+|||.+.-+++..+. ......++.++|+.--
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 689999999976532 2456788999999999988655544432 2222357778886544
No 461
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=52.01 E-value=77 Score=44.02 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhc--C-CCCceEEEeCCccH
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG--E-RISPHLVVAPLSTL 345 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~--~-~~~p~LIV~P~s~l 345 (1018)
..|-+-|.+++..+.. ...+-.+|.--.|+|||.+.-+++..+.. . ....++.++|+.--
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 4689999999987642 23567889999999999886666555432 2 22357778997644
No 462
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=51.57 E-value=14 Score=38.06 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=19.9
Q ss_pred EEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC
Q 001750 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1018)
Q Consensus 308 ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1018)
||..+=|-|||...-..+..+...+..+++|.+|.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~ 35 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPS 35 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCC
Confidence 35556899999776555666655555689999995
No 463
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=51.52 E-value=7.5 Score=42.93 Aligned_cols=50 Identities=22% Similarity=0.590 Sum_probs=33.2
Q ss_pred cccccccccccccC--C---CeEecCCCCccc--------cccccCCCCCCCCC-CCCCccccC
Q 001750 47 IDAKDDSCQACGES--E---NLMSCDTCTYAY--------HAKCLVPPLKAPPS-GSWRCPECV 96 (1018)
Q Consensus 47 ~~~~~~~C~~C~~~--~---~l~~C~~C~~~~--------H~~Cl~p~l~~~p~-~~W~C~~C~ 96 (1018)
+++.+..|.+||+. | .|+.|.+|...| |+.|....-..+.. ..=.||.|.
T Consensus 11 dedl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CR 74 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCR 74 (475)
T ss_pred ccccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchh
Confidence 44556889999974 3 299999998766 56676544333332 234688886
No 464
>PRK08760 replicative DNA helicase; Provisional
Probab=51.28 E-value=41 Score=40.40 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHH
Q 001750 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1018)
Q Consensus 293 gv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~ 355 (1018)
.++-+...+..+.=+|||..+|.|||.-++.++.........|+++...--...++...+...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh
Confidence 333444456777788999999999999999998876543334888988877777777766543
No 465
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=51.09 E-value=70 Score=41.76 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEechhhHHHHHHHH----HhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEE
Q 001750 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDY----LTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1018)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~----L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~L 681 (1018)
.|||.......+-.....|.+++|.+..+....-.... +...++++..++|.++..++.+++..+.++..+ ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 57887655444333445688999999988766654444 444577888999999999999999888754333 56
Q ss_pred eeccc-ccccccCCCCCEEEEEcCC
Q 001750 682 LSTRA-GGLGINLATADTVIIYDSD 705 (1018)
Q Consensus 682 lstra-gg~GINL~~ad~VIi~D~d 705 (1018)
++|.+ ....+.+....+||+=+-+
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeeccc
Confidence 66664 3456777788887775543
No 466
>PF12846 AAA_10: AAA-like domain
Probab=50.82 E-value=44 Score=36.78 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=31.1
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W 348 (1018)
+.++++.-.+|.|||..+..++..+...+ .+++|+=|..-...|
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-PRVVIFDPKGDYSPL 44 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-CCEEEEcCCchHHHH
Confidence 46788999999999998888877776654 355666555444343
No 467
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.74 E-value=51 Score=37.96 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=33.8
Q ss_pred CceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHHH
Q 001750 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1018)
Q Consensus 305 ~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~~ 355 (1018)
+++++.-..|+|||+.|=|+.... ...|.=|.-..+.+.|+-|=++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc----~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC----GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh----cCeEEEechhhhhhhhccchHHH
Confidence 688999999999999887766542 23555555566668898776553
No 468
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.74 E-value=18 Score=42.23 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=36.8
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHHH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~~ 354 (1018)
-++.+|+-+.|.|||..+.+++... ...|-=|.|.++...|.-|-++
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~----~atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATES----GATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhh----cceEeeccHHHhhhhccChHHH
Confidence 3477899999999999988877643 3467788889998888776644
No 469
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=50.55 E-value=19 Score=37.07 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=40.1
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcC---------CCCceEEEeCCccHHHHHHHHHHHc
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFATWA 356 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~---------~~~p~LIV~P~s~l~~W~~E~~~~~ 356 (1018)
.+.-++++-..|.|||..++.++..+... ...++|++.......+..+-+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 56668999999999999999999888752 2348899988777777777777665
No 470
>PHA00673 acetyltransferase domain containing protein
Probab=50.23 E-value=22 Score=35.71 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=36.3
Q ss_pred ceEEEEcccccccCcccHHHHHHHhcc---cccEEEEecCCCCCCH
Q 001750 429 WQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLLTGTPLQNNL 471 (1018)
Q Consensus 429 w~~lIvDEaHrlKn~~s~~~~~l~~l~---~~~rllLTgTPlqN~~ 471 (1018)
.+.|.|++.||=++-.+.++....... ..++|.+||||-.|.+
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv 133 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLV 133 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccch
Confidence 467999999999999998888877653 5689999999988875
No 471
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=50.10 E-value=72 Score=37.17 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=22.9
Q ss_pred hcCCCceEEEcCCCccHHHHHHHHHHHHhcC
Q 001750 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1018)
Q Consensus 301 ~~~~~~~ILaDemGlGKTiqai~~l~~l~~~ 331 (1018)
...|++++|...-|.|||..+-.+...+...
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 3567778888899999998776666655443
No 472
>PRK09183 transposase/IS protein; Provisional
Probab=49.79 E-value=16 Score=40.10 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEE
Q 001750 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1018)
Q Consensus 290 Q~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV 339 (1018)
++.++.|+ ..+.+++|.-+.|.|||..+.++...+...+ ..++++
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~ 136 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFT 136 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEE
Confidence 44445554 6788999999999999999988866654433 244444
No 473
>PRK05748 replicative DNA helicase; Provisional
Probab=49.63 E-value=37 Score=40.48 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHH
Q 001750 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1018)
Q Consensus 292 egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~ 352 (1018)
.+++-+...+..|.-.+|+..+|.|||.-++.++.........|++++..--.-.+....+
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 3454454456777788999999999999999998876543334888887765555554444
No 474
>smart00300 ChSh Chromo Shadow Domain.
Probab=49.59 E-value=11 Score=31.59 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.7
Q ss_pred chhhhhhhhccCCCcceeeeeecc
Q 001750 192 TTVDRILACRGEDDEKEYLVKYKE 215 (1018)
Q Consensus 192 ~~verIi~~~~~~~~~~ylVKW~~ 215 (1018)
..+++|+.....++...||+||++
T Consensus 7 ~~~e~Ivg~~d~~G~l~flikwk~ 30 (61)
T smart00300 7 KSWEDIVGITKDDGELTFLIKWKD 30 (61)
T ss_pred CCHHHHhceecCCCeEEEEEEEeC
Confidence 357889888778889999999999
No 475
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=49.52 E-value=34 Score=39.59 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHHHhh--cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH
Q 001750 285 SLHPYQLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~--~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1018)
+|-+-|...++.+...+ ..+.+..|.-.-|+|||...=+++..+... ..++++++|+.+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~-~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR-GKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc-cceEEEecchHHH
Confidence 36678999988875555 456678899999999999877777766443 3488999997654
No 476
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=49.52 E-value=1.2e+02 Score=35.73 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=30.8
Q ss_pred cceEEEEcccccccCcccHHHHHHHhcc-----cccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001750 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1018)
Q Consensus 428 ~w~~lIvDEaHrlKn~~s~~~~~l~~l~-----~~~rllLTgTPlqN~~~EL~~Ll~fL~p 483 (1018)
..+.++||.+=+..+. ..+...+..+. ....|.|++|--.+.+.++...+..+.+
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 3467889987444332 22334444432 2345779999766666666655444433
No 477
>PRK12377 putative replication protein; Provisional
Probab=49.30 E-value=31 Score=37.63 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=29.8
Q ss_pred CCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHH
Q 001750 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1018)
Q Consensus 304 ~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~ 346 (1018)
..+.+|.-..|+|||..+.+++..+...+. +++++.-..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~~~~l~~ 142 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMS 142 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEEHHHHHH
Confidence 457889999999999999999998876542 444443333333
No 478
>PRK10263 DNA translocase FtsK; Provisional
Probab=49.01 E-value=57 Score=43.36 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=29.6
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcC-CCC--ceEEEeCCc
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPLS 343 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~-~~~--p~LIV~P~s 343 (1018)
+..+.+++-.+|.|||...-++|..+... .+. .+++|=|+.
T Consensus 1009 k~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1009 KMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 34688999999999999988888776543 222 556666663
No 479
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.77 E-value=2.1e+02 Score=33.20 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=52.5
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCeEEEEechh---hHHHHHHHHHhhCCCcEE-EEeCCCChHHHHHHHHHhccCCCC
Q 001750 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---HMLDLLEDYLTFKKWQYE-RIDGKVGGAERQIRIDRFNAKNSS 676 (1018)
Q Consensus 604 i~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~---~~ldiL~~~L~~~g~~~~-rldG~~~~~~Rq~~i~~Fn~~~s~ 676 (1018)
++.+||...+.++...++.+|.|+.+.|--+ ...|.|...-...+++|. .++..-+..--.+-+++|...+-+
T Consensus 109 LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fd 185 (483)
T KOG0780|consen 109 LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFD 185 (483)
T ss_pred ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCc
Confidence 4578899999999999999999998888644 356777776666677754 334444556667788999765544
No 480
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=48.21 E-value=23 Score=44.97 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcC-CC--CceEEEeCC
Q 001750 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL 342 (1018)
Q Consensus 285 ~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~-~~--~p~LIV~P~ 342 (1018)
.|.|-|.++|. ...+.+++....|+|||.+.+.-+.+|... +. ..+|+++-+
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVK------TTEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHh------CCCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 48899999987 345778888899999999999999999864 33 357777775
No 481
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=48.08 E-value=31 Score=37.47 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=24.3
Q ss_pred cCCCccHHHHHHHHHHHHhcCCCCceEEE--eCCccH
Q 001750 311 DEMGLGKTIQSIAFLASLFGERISPHLVV--APLSTL 345 (1018)
Q Consensus 311 DemGlGKTiqai~~l~~l~~~~~~p~LIV--~P~s~l 345 (1018)
--=|.|||..+.++...|...+. ++|+| .|.+.+
T Consensus 9 ~kGGvG~TTltAnLA~aL~~~G~-~VlaID~dpqN~L 44 (243)
T PF06564_consen 9 PKGGVGKTTLTANLAWALARLGE-SVLAIDLDPQNLL 44 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCcHHHH
Confidence 33489999999999888876553 56555 565555
No 482
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.01 E-value=2.1e+02 Score=33.49 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeC-C---ccHHHHHHH
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWERE 351 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P-~---s~l~~W~~E 351 (1018)
.+...+++-..|.|||.++..+...+...+. ++.+|+- + ..+.||..-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~-~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNR-TVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCccCccHHHHHHHH
Confidence 3455678889999999998888877655543 4444443 2 235666543
No 483
>PRK09087 hypothetical protein; Validated
Probab=47.78 E-value=87 Score=33.60 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=26.3
Q ss_pred eEEEEcccccccCcccHHHHHHHhcc-cccEEEEecC
Q 001750 430 QCMIVDEGHRLKNKDSKLFSSLKQYS-TRHRVLLTGT 465 (1018)
Q Consensus 430 ~~lIvDEaHrlKn~~s~~~~~l~~l~-~~~rllLTgT 465 (1018)
++|+||+.|.+......++..+..+. ....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 37999999988655566777666654 3567888887
No 484
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=47.58 E-value=7.2e+02 Score=31.81 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=39.0
Q ss_pred CEEEEEcCCCCcchHHHHHHHHHhhCC---CCcEEEEEEeeCCCHHHHH--HHHHHHHHHHHHHHhc
Q 001750 697 DTVIIYDSDWNPHADLQAMARAHRLGQ---TNKVMIFRLITRGSIEERM--MQMTKKKMVLEHLVVG 758 (1018)
Q Consensus 697 d~VIi~D~dwNp~~~~Qa~gR~hRiGQ---~k~V~Iyrlvt~~TvEe~i--~~~~~~K~~l~~~v~~ 758 (1018)
..||+|+++-++-.-+ -..+- .+..+||.++..+|+||.- ..+.+.|+...+++-.
T Consensus 546 ~yvi~y~~~~~~vRqi------EvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIre 606 (892)
T KOG0442|consen 546 RYVIMYESDLTFVRQI------EVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIRE 606 (892)
T ss_pred ceEEEEcCCCCceeee------eeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHhh
Confidence 4589999987665432 22332 3456799999999999854 4567778887777753
No 485
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=46.85 E-value=40 Score=42.96 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHH
Q 001750 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1018)
Q Consensus 303 ~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W 348 (1018)
...+++|.-..|+|||..|-++...+ ..+++.|-+..++..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~----~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES----GANFIAVRGPEILSKW 527 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----CCCEEEEehHHHhhcc
Confidence 45678999999999999887776653 2377777766555444
No 486
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=46.72 E-value=51 Score=35.10 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=36.2
Q ss_pred hcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHHH
Q 001750 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1018)
Q Consensus 301 ~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~~ 353 (1018)
+..+...+|+-+.|+|||..+..++...... ..+++++.-.....+..+...
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~~~ 68 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQAA 68 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHH
Confidence 4567778899999999999999888765543 237777776555544444433
No 487
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=46.51 E-value=42 Score=38.04 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=31.3
Q ss_pred CCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHh
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (1018)
Q Consensus 284 ~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~ 329 (1018)
+.+.+.|.+.+ ......+.+++++-.+|+|||..+-+++..+.
T Consensus 131 g~~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 131 GIMTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 45666666554 44446789999999999999977777776553
No 488
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=46.49 E-value=93 Score=35.45 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=67.2
Q ss_pred CccHHHHHHHHHHHHhcCCC---------C-----ceEEEeCCccHHHHHHH---HHHHcCCCeEEEEecChHHHHHHHH
Q 001750 314 GLGKTIQSIAFLASLFGERI---------S-----PHLVVAPLSTLRNWERE---FATWAPQMNVVMYVGTSQARNIIRE 376 (1018)
Q Consensus 314 GlGKTiqai~~l~~l~~~~~---------~-----p~LIV~P~s~l~~W~~E---~~~~~p~~~vv~y~g~~~~r~~i~~ 376 (1018)
|+|||=.++.++..|...+. + ..++|.|.+.-..--+| +.+.+| +.++.|....+....-
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~---~~V~V~~dR~~~~~~~ 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP---VPVIVGPDRVAAARAA 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC---CcEEEeCcHHHHHHHH
Confidence 89999999999999876531 1 27888888866555555 455555 4444454433322111
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcccccccC----cccHHHHHHH
Q 001750 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLK 452 (1018)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn----~~s~~~~~l~ 452 (1018)
. .....+|+|.- +-+.. .--.-+.++|++|-.+-+-| +...+..-+.
T Consensus 124 ~-------------------------~~~~~dviilD-DGfQh---~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~ 174 (326)
T PF02606_consen 124 L-------------------------KEFPADVIILD-DGFQH---RRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLS 174 (326)
T ss_pred H-------------------------HHCCCCEEEEc-CCccc---ccccCCcEEEEEeCCCCCcCCccCCCCcccCChh
Confidence 0 01124555542 11100 00112467888887665555 2334444455
Q ss_pred hcccccEEEEecCCC
Q 001750 453 QYSTRHRVLLTGTPL 467 (1018)
Q Consensus 453 ~l~~~~rllLTgTPl 467 (1018)
.++....+++|+.+.
T Consensus 175 ~l~rAD~vi~~~~~~ 189 (326)
T PF02606_consen 175 ALKRADAVIVTGCDA 189 (326)
T ss_pred HhCcccEEEEcCCCc
Confidence 565556677787764
No 489
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.38 E-value=68 Score=38.25 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhC-CeEEEEechhhHHHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccc-ccc
Q 001750 613 LDKMMVKLKEQG-HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-GLG 690 (1018)
Q Consensus 613 L~klL~~l~~~g-~kvLIFsq~~~~ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstrag-g~G 690 (1018)
+.++++.+...+ ..+|||-..---.=.|..|++..++.|..+.--++...-..+-+-|..+... ++|.+-|+- =.-
T Consensus 540 v~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~--vlLyTER~hffrR 617 (698)
T KOG2340|consen 540 VDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKS--VLLYTERAHFFRR 617 (698)
T ss_pred HHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCce--EEEEehhhhhhhh
Confidence 567777777654 4567877644444457788888889998888777766666777778765544 456666653 345
Q ss_pred ccCCCCCEEEEEcCCCCcchHHHHHHHHHh
Q 001750 691 INLATADTVIIYDSDWNPHADLQAMARAHR 720 (1018)
Q Consensus 691 INL~~ad~VIi~D~dwNp~~~~Qa~gR~hR 720 (1018)
-.+.+...||+|.||-||+-|.--+-=..|
T Consensus 618 ~~ikGVk~vVfYqpP~~P~FYsEiinm~~k 647 (698)
T KOG2340|consen 618 YHIKGVKNVVFYQPPNNPHFYSEIINMSDK 647 (698)
T ss_pred heecceeeEEEecCCCCcHHHHHHHhhhhh
Confidence 677888999999999999988655443333
No 490
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=46.28 E-value=41 Score=45.45 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCC--CceEEEeCCccHHHH
Q 001750 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--SPHLVVAPLSTLRNW 348 (1018)
Q Consensus 286 L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~--~p~LIV~P~s~l~~W 348 (1018)
+.+-|..++. ..+.+.++...-|+|||.+.+.-+..+...+. ..+||||=+....+.
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e 60 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAARE 60 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHH
Confidence 4578999886 56889999999999999998887776654433 368888876555433
No 491
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=45.74 E-value=75 Score=32.12 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=25.8
Q ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC
Q 001750 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1018)
Q Consensus 307 ~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1018)
.++.-..|.|||..+..++..+...+....+|-++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 467889999999999998888776643333444443
No 492
>PRK06904 replicative DNA helicase; Validated
Probab=45.58 E-value=55 Score=39.31 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHHHHHH
Q 001750 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1018)
Q Consensus 293 gv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W~~E~ 352 (1018)
+++-+...+..+.=+|||.-+|.|||.-++.++.........|++++..--.-.++...+
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rl 269 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRM 269 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHH
Confidence 444444566778889999999999999998887766433334888888876666665443
No 493
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=45.26 E-value=8 Score=31.54 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.0
Q ss_pred hhhhhhhccCC-Ccceeeeeecc
Q 001750 194 VDRILACRGED-DEKEYLVKYKE 215 (1018)
Q Consensus 194 verIi~~~~~~-~~~~ylVKW~~ 215 (1018)
+++|+.....+ |...||+||++
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~ 24 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD 24 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC
Confidence 56676665544 88999999999
No 494
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=45.20 E-value=46 Score=27.49 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCCch-hhhccc--ccCCCHHHHHHHHHH
Q 001750 968 GFSQNQRAAFVQILMRFGVGDFDW-KEFTPR--LKQKSYEEIREYLTE 1012 (1018)
Q Consensus 968 Gf~~~~r~~f~~~~~~~g~~~~~~-~~~~~~--l~~ks~~e~~~y~~~ 1012 (1018)
.+|+.+..+|+.+|..||.|++.. ..+..- ..+.|..+++..+--
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQK 52 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHH
Confidence 588999999999999999877521 223222 233388888876543
No 495
>PRK13766 Hef nuclease; Provisional
Probab=45.13 E-value=4.5e+02 Score=33.74 Aligned_cols=93 Identities=15% Similarity=0.272 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHH-HHHHhCCeEEEEechhhHHHH----HHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEE
Q 001750 606 SSGKLQLLDKMMV-KLKEQGHRVLIYSQFQHMLDL----LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1018)
Q Consensus 606 ~S~Kl~~L~klL~-~l~~~g~kvLIFsq~~~~ldi----L~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~ 680 (1018)
.+||.....-++. .+...+.++||.+......+- +..++...+.++..++|.++..+|..+... .. ++
T Consensus 39 G~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~--ii 111 (773)
T PRK13766 39 GLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AK--VI 111 (773)
T ss_pred CccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CC--EE
Confidence 4788764333332 334567899999998766544 444443334478889999998887655432 12 33
Q ss_pred Eeecccc-----cccccCCCCCEEEEEcCC
Q 001750 681 LLSTRAG-----GLGINLATADTVIIYDSD 705 (1018)
Q Consensus 681 Llstrag-----g~GINL~~ad~VIi~D~d 705 (1018)
+.+.+.. ..-+++...+.||+-+-.
T Consensus 112 v~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 112 VATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 4443322 223556677777776554
No 496
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=45.08 E-value=1.6e+02 Score=41.80 Aligned_cols=61 Identities=18% Similarity=0.069 Sum_probs=44.3
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccH
Q 001750 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1018)
Q Consensus 282 ~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1018)
.+..|-+-|.+++.-+.. ....-.||.-.-|.|||.+.-+++..+... ...+++++|..--
T Consensus 426 ~~~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~-G~~V~~lAPTgrA 486 (1960)
T TIGR02760 426 SEFALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLASEQ-GYEIQIITAGSLS 486 (1960)
T ss_pred ccCCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCHHH
Confidence 345789999999976532 345667888999999998776666554433 3488999997654
No 497
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=45.07 E-value=5.7 Score=29.84 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=28.9
Q ss_pred ccccccCC-CeEecCCCCccccccccCCCCCCCCCCCCCccccCC
Q 001750 54 CQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1018)
Q Consensus 54 C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1018)
|.+|...- +.+....|.-.||..|+...+.. +...||.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 77787654 44555669999999999654433 4567999875
No 498
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=44.81 E-value=8.5 Score=27.15 Aligned_cols=25 Identities=32% Similarity=1.019 Sum_probs=11.4
Q ss_pred cccccccCC---CeEecCCCCccccccc
Q 001750 53 SCQACGESE---NLMSCDTCTYAYHAKC 77 (1018)
Q Consensus 53 ~C~~C~~~~---~l~~C~~C~~~~H~~C 77 (1018)
.|.+|+..+ ....|..|+-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 488898754 4788999999999887
No 499
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=44.63 E-value=56 Score=38.59 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCCccHHHH
Q 001750 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1018)
Q Consensus 293 gv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~~W 348 (1018)
.++-+...+..|.-+||+..+|.|||.-++.++..+......|++++..--.-.+.
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 44444445677788899999999999999999877653333488888765444444
No 500
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=44.34 E-value=49 Score=42.18 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=25.5
Q ss_pred cCCCceEEEcCCCccHHHHHHHHHHHHhcCCCCceEEEeCC
Q 001750 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1018)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1018)
..+.+++|.-+.|+|||..+-++...+ ..+++.|-..
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~----~~~~i~i~~~ 246 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA----GAYFISINGP 246 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEecH
Confidence 345788999999999998876665543 2355555443
Done!