Query 001750
Match_columns 1018
No_of_seqs 630 out of 4061
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 16:50:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001750.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1046-1050//hhsearch_pdb/001750hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 1016.7 37.5 715 99-875 37-799 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 666.9 37.5 476 284-779 54-573 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 601.2 37.2 462 270-778 25-497 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 458.8 25.4 420 284-754 152-633 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 385.8 29.4 421 284-753 8-492 (494)
6 2fwr_A DNA repair protein RAD2 1.0 1 1 358.5 19.0 377 282-752 90-470 (472)
7 1z5z_A Helicase of the SNF2/RA 1.0 1 1 350.4 22.0 252 516-779 13-269 (271)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 349.3 26.9 436 283-773 246-783 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 338.1 31.6 434 282-772 245-782 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 328.4 31.6 432 284-774 6-543 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1016.68 Aligned_cols=715 Identities=41% Similarity=0.715 Sum_probs=596.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 8765433334555576799973223---6532143444555329765556434667688975209057888886665201
Q 001750 99 LNDIDKILDCEMRPTVAGDSDVSKL---GSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (1018)
Q Consensus 99 ~~~i~kIL~~r~~p~~~~~~~~~~~---~~~~~~~~eylVKWkg~Sy~h~~W~~e~~L~~~~~~~~~~~~~l~~f~k~~~ 175 (1018)
...|++||+.|.+++....+..... ........||||||+|+||+||||+|++.|.. .+++ +++.+|.++..
T Consensus 37 ~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~----~~~~-~~~~~~~k~~~ 111 (800)
T 3mwy_W 37 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ----VRGL-KRLDNYCKQFI 111 (800)
T ss_dssp CCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCS----CBTT-HHHHHHHHHHT
T ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCHHHHHH----CCHH-HHHHHHHHHHH
T ss_conf 874021201654654567741013676767886762799996886111054138787743----4157-99999999863
Q ss_pred C--------CCCCCHH----------HHCCCCCCCHHHHHHHHCC-----CCCCCEEEEEECCCCCCCCCCCCCCCCC-C
Q ss_conf 4--------9998111----------1007987510234643116-----8875304432001564654325588867-6
Q 001750 176 S--------NNNAEED----------FVAIRPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDIS-A 231 (1018)
Q Consensus 176 ~--------~~~~~e~----------~~~~~~~~~~veRIi~~r~-----~~~~~~ylVKW~~L~Y~~~tWe~~~~~~-~ 231 (1018)
. ...++++ .....++|+.|||||+++. ..+..+|||||++|||++||||...++. .
T Consensus 112 ~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~ 191 (800)
T 3mwy_W 112 IEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKL 191 (800)
T ss_dssp HHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTT
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 27788751899987888887566654200011135346898641134678988659999815787342643363443333
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 37899999988510364446746899954322368984444444689878899990689999999998213897459985
Q 001750 232 FQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILAD 311 (1018)
Q Consensus 232 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~L~~yQlegv~wl~~~~~~~~~~ILaD 311 (1018)
.+..++.|..+...... +..........+.|.++..+|+++.+++|||||++|++||...|..+.++||||
T Consensus 192 ~~~~i~~~~~r~~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILad 262 (800)
T 3mwy_W 192 APEQVKHFQNRENSKIL---------PQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILAD 262 (800)
T ss_dssp CHHHHHHHHHTTTCTTC---------STTCCCCCSCCCCCCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECC
T ss_pred HHHHHHHHHHHHHCCCC---------CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 19999999976313447---------751010345577640025699865799758999999999999851389989982
Q ss_pred CCCCCHHHHHHHHHHHHHC--CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 9986089999999999841--99996199958746799999999885999199995685788999975211799901110
Q 001750 312 EMGLGKTIQSIAFLASLFG--ERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVK 389 (1018)
Q Consensus 312 emGlGKTiqai~~l~~l~~--~~~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~ 389 (1018)
+||+|||+|+++++.+++. ...+|+|||||.+++.||.+||.+|+|++++++|+|....+..++.++++.......
T Consensus 263 emGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~-- 340 (800)
T 3mwy_W 263 EMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKG-- 340 (800)
T ss_dssp CTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC------
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCC--
T ss_conf 787532999999999999860779988999880389999999999779964999827777788988877622630013--
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 01467632223223566659991688896110112687412899734433458121899999812235389983589989
Q 001750 390 KKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (1018)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~Viittye~l~~d~~~l~~i~w~~iIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN 469 (1018)
....+++|+||||+++..+...+..+.|++|||||||++||..++.++++..+.+.+||+|||||+||
T Consensus 341 ------------~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN 408 (800)
T 3mwy_W 341 ------------KKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQN 408 (800)
T ss_dssp -------------CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSS
T ss_pred ------------CCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf ------------44566788990699998649998337732564134444147101999999975224389722785779
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 98899999983257999996889999830203999999999744678887775673129995899998338999999999
Q 001750 470 NLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYK 549 (1018)
Q Consensus 470 ~~~EL~~ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~ 549 (1018)
++.|||++++||.|+.|.....|............+..|+.++.|+++||++.++...+|++.+.++.|+|++.|+.+|+
T Consensus 409 ~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~ 488 (800)
T 3mwy_W 409 NIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYK 488 (800)
T ss_dssp CSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 99999999998586636743442322231468999999999975777532087664316882799997079999999999
Q ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999932-89601599999999996086542479999--------94250799999874204999999999999
Q 001750 550 AILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEP--------DIEDTNESFKQLLESSGKLQLLDKMMVKL 620 (1018)
Q Consensus 550 ~il~~~~~~l~~~-~~~~~~l~~il~~Lrk~~~hP~l~~~~e~--------~~~~~~~~~~~li~~S~Kl~~L~klL~~l 620 (1018)
.++.++...+... .+...+++++++.||++|+||+++...+. ...........++..|+|+.+|.++|..+
T Consensus 489 ~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~ 568 (800)
T 3mwy_W 489 NILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRL 568 (800)
T ss_dssp HHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999986103545446999999999873586542355789988615665557788887664276999999999997
Q ss_pred HHHCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 98078099992304379999998741898189995878938999999996068998338995056653354577799899
Q 001750 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1018)
Q Consensus 621 ~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~id~Fn~~~s~~~v~LlsT~agg~GINL~~ad~VI 700 (1018)
.+.|+|||||||++.++++|+++|...|+++.+++|+++..+|+.++++||++++..++||+||+|||+||||++|++||
T Consensus 569 ~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI 648 (800)
T 3mwy_W 569 KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV 648 (800)
T ss_dssp TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE
T ss_pred HHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEE
T ss_conf 52798189996359999999999986799789996999999999999996089998259997454456787760163689
Q ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC--------CCCCCHHHHHH
Q ss_conf 9769999135899999788609998189999840899999999999997889999741101--------14899999999
Q 001750 701 IYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--------AQNINQEELDD 772 (1018)
Q Consensus 701 i~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrlit~~TvEe~i~~~~~~K~~l~~~v~~~~~--------~~~~~~~~l~~ 772 (1018)
+||++|||+.++||+||+||+||+++|.||+|++++|+||+|++++.+|+.|++++++.+. ...++.+++.+
T Consensus 649 ~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ 728 (800)
T 3mwy_W 649 IFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSA 728 (800)
T ss_dssp ESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 94687881168999999885589863799998619989999999999988899999703756653211234789999999
Q ss_pred HHHHCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC--CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99622232202556678885557789889999736888787445788--7460234423144110024778889999999
Q 001750 773 IIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLD--DEDEDGFLKAFKVANFEYIEEVEAAAEEEAQ 850 (1018)
Q Consensus 773 ll~~g~~~l~~~~~~~~~~~~~~~~~~~~id~~l~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (1018)
||++|+..+|.+.+... .+.+.+||.||+|++...+.++.. ...+++|+++|+|++|..
T Consensus 729 ll~~g~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 789 (800)
T 3mwy_W 729 ILKFGAGNMFTATDNQK------KLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYKA------------- 789 (800)
T ss_dssp HHSSCSSSSCCSHHHHH------HHHTCCHHHHHHHCEECCCSCCCCCCEESCHHHHHTTC-------------------
T ss_pred HHHCCHHHHHHCCCCCC------CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEEECCC-------------
T ss_conf 99716576511457643------25405799998743432446465565655688986120030236-------------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 9997301478987790479999895
Q 001750 851 KLAAENKSSMSNSERSSYWEELLKD 875 (1018)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~w~~~~~~ 875 (1018)
...|+.|||+
T Consensus 790 ---------------~~~~~~~~~~ 799 (800)
T 3mwy_W 790 ---------------DIDWDDIIPE 799 (800)
T ss_dssp -------------------------
T ss_pred ---------------CCCHHHCCCC
T ss_conf ---------------8987871889
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=666.91 Aligned_cols=476 Identities=33% Similarity=0.553 Sum_probs=400.2
Q ss_pred CCCHHHHHHHHHHHHHHH-----CCCCCEEEECCCCCCHHHHHHHHHHHHHCCC------CCCEEEEECCCCHHHHHHHH
Q ss_conf 999068999999999821-----3897459985998608999999999984199------99619995874679999999
Q 001750 284 GSLHPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGER------ISPHLVVAPLSTLRNWEREF 352 (1018)
Q Consensus 284 ~~L~~yQlegv~wl~~~~-----~~~~~~ILaDemGlGKTiqai~~l~~l~~~~------~~p~LIV~P~s~l~~W~~E~ 352 (1018)
..|+|||.+|++||...+ ..+.++||||+||+|||+|+++++..+.... .+++|||||.+++.||.+||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 03519999999999984233544588875961078742999999999999974866567778579996589988799999
Q ss_pred HHHCCC-CEEEEEECCH-HHHH-HHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCC
Q ss_conf 988599-9199995685-7889-999752117999011100146763222322356665999168889611011268741
Q 001750 353 ATWAPQ-MNVVMYVGTS-QARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1018)
Q Consensus 353 ~~~~p~-~~vv~~~g~~-~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Viittye~l~~d~~~l~~i~w 429 (1018)
.+|+|. +.++.++|.. ..+. .+..+ .... .....++|+||||+++..+...+....|
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~------------------~~~~~~~vvi~ty~~l~~~~~~l~~~~~ 193 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNF--ISQQ------------------GMRIPTPILIISYETFRLHAEVLHKGKV 193 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHH--HCCC------------------SSCCSCCEEEEEHHHHHHHTTTTTTSCC
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHH--HHHC------------------CCCCCCCEEEEEHHHHHHHHHHHHCCCC
T ss_conf 9975887259998089889999999999--8733------------------7777875799638998765787504886
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCHH---------
Q ss_conf 28997344334581218999998122353899835899899889999998325799999688999983020---------
Q 001750 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (1018)
Q Consensus 430 ~~iIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~~~~~~--------- 500 (1018)
++||+||||++||..++.++++..+.+.+||+|||||+||++.|||++++|+.|+.+++...|...|....
T Consensus 194 ~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~ 273 (644)
T 1z3i_X 194 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADAS 273 (644)
T ss_dssp CEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCC
T ss_pred CEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCC
T ss_conf 57998786224780459999998555673799846734588999999998618876899999998632615416776778
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf ------3999999999744678887775673129995899998338999999999999999999993-289601599999
Q 001750 501 ------QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-RGGAQISLINVV 573 (1018)
Q Consensus 501 ------~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~-~~~~~~~l~~il 573 (1018)
....+..|+.++.|+++||++.++...||++.+.++.|+|++.|+.+|+.++......... .+......+..+
T Consensus 274 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l 353 (644)
T 1z3i_X 274 DKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSI 353 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 88999999999999999889998710876764279836999983799899999999999899999876276214599999
Q ss_pred HHHHHHHCCCCCCCCC----CCCCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHH-HCCEEEEEECHHHHHHHHH
Q ss_conf 9999960865424799----999425079-------999987420499999999999998-0780999923043799999
Q 001750 574 MELRKLCCHPYMLEGV----EPDIEDTNE-------SFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLE 641 (1018)
Q Consensus 574 ~~Lrk~~~hP~l~~~~----e~~~~~~~~-------~~~~li~~S~Kl~~L~klL~~l~~-~g~kvLIFsq~~~~ldiL~ 641 (1018)
+.||++|+||+++... ++....... ........|+|+.+|..++..+.. .++|+||||+++.++++|+
T Consensus 354 ~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~ 433 (644)
T 1z3i_X 354 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 433 (644)
T ss_dssp HHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 99999957999888887415400355776454211100057011748999999999986469987999980599999999
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 98741898189995878938999999996068998338995056653354577799899976999913589999978860
Q 001750 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1018)
Q Consensus 642 ~~L~~~g~~~~ridG~~~~~~Rq~~id~Fn~~~s~~~v~LlsT~agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~~Ri 721 (1018)
.+|...|+.+.+++|+++..+|+.++++|+++.+..++||+||++||+||||+.|++||+||++|||..+.||+||+||+
T Consensus 434 ~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~ 513 (644)
T 1z3i_X 434 KLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 513 (644)
T ss_dssp HHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99997799789983999999999999996399999679998445566784652389899979999813799998840322
Q ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHCHH
Q ss_conf 999818999984089999999999999788999974110--1148999999999962223
Q 001750 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIRYGSK 779 (1018)
Q Consensus 722 GQ~k~V~Vyrlit~~TvEe~i~~~~~~K~~l~~~v~~~~--~~~~~~~~~l~~ll~~g~~ 779 (1018)
||+++|.||+|++.+|+||+|++++..|..+...|++.. ....++.+++.+++.++..
T Consensus 514 Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~~ 573 (644)
T 1z3i_X 514 GQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEK 573 (644)
T ss_dssp TCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSS
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCC
T ss_conf 898726999988798899999999999999999985686054337899999998678987
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=601.21 Aligned_cols=462 Identities=31% Similarity=0.583 Sum_probs=400.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHHH
Q ss_conf 444444689878899990689999999998213897459985998608999999999984199-9961999587467999
Q 001750 270 EFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNW 348 (1018)
Q Consensus 270 ~~~~~~~~P~~~~~~~L~~yQlegv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~~W 348 (1018)
.+..+. |..+. .+|+|||.+|++|+...+..+.++||||+||+|||+++++++..+...+ .+++|||||.+++.||
T Consensus 25 ~~~~~~--p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw 101 (500)
T 1z63_A 25 SFQLLE--PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNW 101 (500)
T ss_dssp -CCCCC--CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHH
T ss_pred CCCCCC--CHHHH-CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
T ss_conf 776679--83320-033699999999999974179988998089973899999999988755899978999038999999
Q ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCC
Q ss_conf 99999885999199995685788999975211799901110014676322232235666599916888961101126874
Q 001750 349 EREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIK 428 (1018)
Q Consensus 349 ~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Viittye~l~~d~~~l~~i~ 428 (1018)
.+||.+|+|.+++.+++|.... .....++|+|+||+++..+.. +....
T Consensus 102 ~~e~~~~~~~~~v~~~~g~~~~-------------------------------~~~~~~~ivi~t~~~l~~~~~-l~~~~ 149 (500)
T 1z63_A 102 EEELSKFAPHLRFAVFHEDRSK-------------------------------IKLEDYDIILTTYAVLLRDTR-LKEVE 149 (500)
T ss_dssp HHHHHHHCTTSCEEECSSSTTS-------------------------------CCGGGSSEEEEEHHHHTTCHH-HHTCC
T ss_pred HHHHHHHCCCCEEEEEECCCHH-------------------------------CCCCCCCEEEEEHHHHHCCCH-HCCCC
T ss_conf 9999997799559997267021-------------------------------003577689963799726302-11787
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCH---HHHHHH
Q ss_conf 12899734433458121899999812235389983589989988999999832579999968899998302---039999
Q 001750 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQI 505 (1018)
Q Consensus 429 w~~iIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~~~~~---~~~~~~ 505 (1018)
|++||+||||+++|..++.++++..+.+.++|+|||||++|++.|+|++++|+.|+.+++...|...|... ......
T Consensus 150 ~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (500)
T 1z63_A 150 WKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAK 229 (500)
T ss_dssp EEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHH
T ss_conf 28799808410178768999999960047189974677779999999999985877579989999985251114668899
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHC
Q ss_conf 999997446788877756--73129995899998338999999999999999999993289--60159999999999608
Q 001750 506 SRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCC 581 (1018)
Q Consensus 506 ~~L~~~L~p~~lRR~k~d--v~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~--~~~~l~~il~~Lrk~~~ 581 (1018)
..|+.++.|+++||++.+ +...+|++.+.++.++|++.|+..|+.+.......+....+ ....++..++.|+++|+
T Consensus 230 ~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~ 309 (500)
T 1z63_A 230 EELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVD 309 (500)
T ss_dssp HHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999976674550255424112299975899981899999999999999999999864232106799999999998817
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHC-CCCEEEEECCCCH
Q ss_conf 654247999994250799999874204999999999999980780999923043799999987418-9818999587893
Q 001750 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGG 660 (1018)
Q Consensus 582 hP~l~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~ 660 (1018)
||.++...+. ....++|+..+.+++..+...|+|+||||+++.+++.|..+|... |+.+.+++|+++.
T Consensus 310 ~p~l~~~~~~-----------~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 378 (500)
T 1z63_A 310 HPALLKGGEQ-----------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSK 378 (500)
T ss_dssp CTHHHHCSCC-----------CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCH
T ss_pred CHHHHCCCCC-----------HHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 9988438520-----------11115529999999999872688689997218899999999988538876999799999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHH
Q ss_conf 89999999960689983389950566533545777998999769999135899999788609998189999840899999
Q 001750 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1018)
Q Consensus 661 ~~Rq~~id~Fn~~~s~~~v~LlsT~agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrlit~~TvEe 740 (1018)
.+|+.+++.|++++... ++|+||+++|+||||+.|++||+||++|||..++||+||+||+||+++|.||+|++++|+||
T Consensus 379 ~~R~~~~~~F~~~~~~~-vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 379 KERDDIISKFQNNPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp HHHHHHHHHHHHCTTCC-CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred HHHHHHHHHHCCCCCCC-EEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHH
T ss_conf 99999999960899987-79995333557774455888999589989545899999888738987069999774898999
Q ss_pred HHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHCH
Q ss_conf 99999999788999974110--114899999999996222
Q 001750 741 RMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIRYGS 778 (1018)
Q Consensus 741 ~i~~~~~~K~~l~~~v~~~~--~~~~~~~~~l~~ll~~g~ 778 (1018)
+|++++..|..+...+++.. ....++.+++.+++.+..
T Consensus 458 ~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 497 (500)
T 1z63_A 458 KIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSV 497 (500)
T ss_dssp HTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCC
T ss_conf 9999999999999998606850211599999999964688
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=458.76 Aligned_cols=420 Identities=20% Similarity=0.260 Sum_probs=323.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 9990689999999998213897459985998608999999999984199-996199958746799999999885999199
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1018)
Q Consensus 284 ~~L~~yQlegv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv 362 (1018)
.+|+|||.++++|+.. ..+.++||||+||+|||+++++++..+...+ .+++|||||.+++.||..||.+|+ ++++.
T Consensus 152 ~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v~ 228 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRFA 228 (968)
T ss_dssp SCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCCE
T ss_pred CCCCHHHHHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH-CCCEE
T ss_conf 9970999999999997--05898898789997599999999999998189982999957888999999999986-99879
Q ss_pred EEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCC---CCCCCCCCEEEEECCCCC
Q ss_conf 99568578899997521179990111001467632223223566659991688896110---112687412899734433
Q 001750 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (1018)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Viittye~l~~d~---~~l~~i~w~~iIvDEaHr 439 (1018)
+++|.......... ......++|+|+||+++..+. ..+....|++|||||||+
T Consensus 229 v~~~~~~~~~~~~~------------------------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 229 LFDDERYAEAQHDA------------------------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp ECCHHHHHHHHHTT------------------------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred EECCCHHHHHHHHC------------------------CCCCCCCCEEEECHHHHHHCHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 98062055543200------------------------364456898997689986487888876415877897444676
Q ss_pred CCCCCCH---HHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHH-----------
Q ss_conf 4581218---99999812--2353899835899899889999998325799999688999983020399-----------
Q 001750 440 LKNKDSK---LFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE----------- 503 (1018)
Q Consensus 440 lkn~~s~---~~~~l~~l--~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~~~~~~~~~----------- 503 (1018)
++|..+. .++.+..+ .++++|+|||||++|++.|+|++++|+.|..|++...|...+.......
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~ 364 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNK 364 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 25888754299999999862578589997687669879999999825930118989999999857889999998742678
Q ss_pred -----------------------------------HHHHHHHHH-----HHHHHHHHHHHHHHCCCCCEEEEEEECCCHH
Q ss_conf -----------------------------------999999974-----4678887775673129995899998338999
Q 001750 504 -----------------------------------QISRLHRML-----APHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1018)
Q Consensus 504 -----------------------------------~~~~L~~~L-----~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~ 543 (1018)
....+..++ ...++|+++..+ ..+|++....+.+++++.
T Consensus 365 ~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~ 443 (968)
T 3dmq_A 365 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQ 443 (968)
T ss_dssp CCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHH
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCHHHEEEEECCCCHH
T ss_conf 9988999999884203367887503622233379999999999986173326563226554-556711157523689999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999993289601599999999996086542-4799999425079999987420499999999999998
Q 001750 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM-LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (1018)
Q Consensus 544 Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~~~hP~l-~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~ 622 (1018)
....|...... ......... ...+ .+|.. +....... ......+.|+..|.+++.. .
T Consensus 444 ~~~~~~~~~~~-----~~~~~~~~~-------~~~~-l~pe~~~~~l~~~~-------~~~~~~~~K~~~L~~ll~~--~ 501 (968)
T 3dmq_A 444 YQTAIKVSGIM-----GARKSAEDR-------ARDM-LYPERIYQEFEGDN-------ATWWNFDPRVEWLMGYLTS--H 501 (968)
T ss_dssp HHHHHHHHHHT-----TCCSSGGGG-------THHH-HCSGGGTTTTTSSS-------CCTTTTSHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHH-----HHHHHHHHH-------HHHH-CCHHHHHHHHHHHH-------HCCCCCCHHHHHHHHHHHH--C
T ss_conf 99999987543-----021266777-------7641-08598998764333-------1356856799999999983--7
Q ss_pred HCCEEEEEECHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 078099992304379999998741-8981899958789389999999960689983389950566533545777998999
Q 001750 623 QGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1018)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~~Rq~~id~Fn~~~s~~~v~LlsT~agg~GINL~~ad~VIi 701 (1018)
.+.++||||++..+++.|...|.. .|+++..++|+++..+|+.+++.|+++.+ .+.+|++|+++++|||++.+++||+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCEEEE
T ss_conf 999789996959999999999998749838998499999999999999747997-6308985334316888556767999
Q ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 76999913589999978860999818999984089999999999999788999
Q 001750 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (1018)
Q Consensus 702 ~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrlit~~TvEe~i~~~~~~K~~l~~ 754 (1018)
||++|||..+.|++||++|+||++.|.||++++.+|+|++|++...+|+.+..
T Consensus 581 ~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~ 633 (968)
T 3dmq_A 581 FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFE 633 (968)
T ss_dssp SSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSS
T ss_pred ECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEE
T ss_conf 56999878999870114307998508999805777199999999986787635
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=385.80 Aligned_cols=421 Identities=14% Similarity=0.183 Sum_probs=296.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC-CCHHHHHHHHHHHC--CCCE
Q ss_conf 99906899999999982138974599859986089999999999841999961999587-46799999999885--9991
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (1018)
Q Consensus 284 ~~L~~yQlegv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~--p~~~ 360 (1018)
.+|+|||.+++.|+. .+ ++||+++||+|||++++.++..+.....+++|||||. +++.||.+++.+|+ |...
T Consensus 8 ~~l~~~Q~~~i~~~~----~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCK----ET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HCCCHHHHHHHHHGG----GS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCCHHHHHHHHHHH----HC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 786399999999996----19-9899918998789999999999986479859999788899999999999874756111
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCC--CCCCCCCEEEEECCCC
Q ss_conf 99995685788999975211799901110014676322232235666599916888961101--1268741289973443
Q 001750 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (1018)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Viittye~l~~d~~--~l~~i~w~~iIvDEaH 438 (1018)
+..++|.......... ....+|+|+||+.+..... .+....|++||+||||
T Consensus 83 v~~~~g~~~~~~~~~~---------------------------~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 83 IVALTGEKSPEERSKA---------------------------WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp EEEECSCSCHHHHHHH---------------------------HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred EEEEECCCCHHHHHHH---------------------------CCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCC
T ss_conf 6876077533556653---------------------------3579899963999999986087156541089997875
Q ss_pred CCCCCCCHHH--HHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC---CHHHHHHHH--------HCHHHHHH
Q ss_conf 3458121899--99981-2235389983589989988999999832579999---968899998--------30203999
Q 001750 439 RLKNKDSKLF--SSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG---SLEEFQEEF--------KDINQEEQ 504 (1018)
Q Consensus 439 rlkn~~s~~~--~~l~~-l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~---~~~~F~~~~--------~~~~~~~~ 504 (1018)
++++..+... ..+.. ....++++|||||. ++..+++.++.++.+.... ....+...+ ........
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (494)
T 1wp9_A 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEI 214 (494)
T ss_dssp GCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECCCCHH
T ss_conf 66888819999999973288776999956998-88578999998507000502678758788752787426895688588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC----------------------
Q ss_conf 9999997446788877756731299958999983389999999999999999999932----------------------
Q 001750 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR---------------------- 562 (1018)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~---------------------- 562 (1018)
...+...+.+.+.++.+......+..... ..++......... .....+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (494)
T 1wp9_A 215 YKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQ---IINEEMAKGNHDLRGLLLYHAMALKLHHAIE 287 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHH---HHHHHHTTTCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999989899999999999735565457----7733557899999---9998753356311347999988888999999
Q ss_pred ---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH----------HHHHHHHHHHHHHHHHHHH--HHCCEE
Q ss_conf ---8960159999999999608654247999994250799999----------8742049999999999999--807809
Q 001750 563 ---GGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQ----------LLESSGKLQLLDKMMVKLK--EQGHRV 627 (1018)
Q Consensus 563 ---~~~~~~l~~il~~Lrk~~~hP~l~~~~e~~~~~~~~~~~~----------li~~S~Kl~~L~klL~~l~--~~g~kv 627 (1018)
......+...+..+...+.|+..... ... ..+..+.. ....++|+..|.++|.... ..++|+
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~ 364 (494)
T 1wp9_A 288 LLETQGLSALRAYIKKLYEEAKAGSTKAS--KEI-FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKI 364 (494)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCHHH--HHH-HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCHHH--HHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99852579999999999875223211455--666-650788989999998874589986999999999998436899759
Q ss_pred EEEECHHHHHHHHHHHHHHCCCCEEEEEC--------CCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 99923043799999987418981899958--------7893899999999606899833899505665335457779989
Q 001750 628 LIYSQFQHMLDLLEDYLTFKKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1018)
Q Consensus 628 LIFsq~~~~ldiL~~~L~~~g~~~~ridG--------~~~~~~Rq~~id~Fn~~~s~~~v~LlsT~agg~GINL~~ad~V 699 (1018)
|||+++..+++.|.++|...|+.+.+++| +++..+|+.+++.|+++.. .+|++|.++++||||+.+++|
T Consensus 365 lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~---~vLv~T~~~~~Gldl~~~~~V 441 (494)
T 1wp9_A 365 IVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF---NVLVATSVGEEGLDVPEVDLV 441 (494)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSC---SEEEECGGGGGGGGSTTCCEE
T ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCCCHHCCEE
T ss_conf 99976689999999999975998079965665444445899999999999866994---699988841258871437989
Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 997699991358999997886099981899998408999999999999978899
Q 001750 700 IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1018)
Q Consensus 700 Ii~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrlit~~TvEe~i~~~~~~K~~l~ 753 (1018)
|+||++|||..++|++||++|.|| +.+|+|++.+|+||+++..+.+|..+.
T Consensus 442 i~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 442 VFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp EESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred EEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 992898878999998752257788---469999956987899999888789873
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=358.52 Aligned_cols=377 Identities=17% Similarity=0.222 Sum_probs=276.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC-CCHHHHHHHHHHHCCCCE
Q ss_conf 8999906899999999982138974599859986089999999999841999961999587-467999999998859991
Q 001750 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN 360 (1018)
Q Consensus 282 ~~~~L~~yQlegv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~~W~~E~~~~~p~~~ 360 (1018)
.+.+|+|||.++++++ ..+.++||+++||+|||++++.++..+ ..++|||||. +++.||.++|..| +..
T Consensus 90 ~~~~l~~~Q~~ai~~i----~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~ 159 (472)
T 2fwr_A 90 AEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF--GEE 159 (472)
T ss_dssp CCCCBCHHHHHHHHHH----TTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGG--CGG
T ss_pred CCCCCCHHHHHHHHHH----HHCCCEEEEECCCCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHC--CCC
T ss_conf 8998688999999999----965987999699998899999999980----999999987999999999999967--996
Q ss_pred -EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf -9999568578899997521179990111001467632223223566659991688896110112687412899734433
Q 001750 361 -VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1018)
Q Consensus 361 -vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Viittye~l~~d~~~l~~i~w~~iIvDEaHr 439 (1018)
+.+++|... ...+|+|+||+.+......+. -.|++||+||||+
T Consensus 160 ~v~~~~g~~~-----------------------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~ 203 (472)
T 2fwr_A 160 YVGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHH 203 (472)
T ss_dssp GEEEBSSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGG
T ss_pred CEEEECCCCC-----------------------------------CCCCEEEEECHHHHHHHHHHC-CCCCEEEEECCCC
T ss_conf 3699878767-----------------------------------767789997689997799736-8777899989757
Q ss_pred CCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45812189999981223538998358998998899999983257999996889999830203999999999744678887
Q 001750 440 LKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRR 519 (1018)
Q Consensus 440 lkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR 519 (1018)
+.+.... ..+..+...++++|||||.+++..+ ..+...+.+.+.++
T Consensus 204 ~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~--------------------------------~~l~~~~~~~~~~~ 249 (472)
T 2fwr_A 204 LPAESYV--QIAQMSIAPFRLGLTATFEREDGRH--------------------------------EILKEVVGGKVFEL 249 (472)
T ss_dssp TTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG--------------------------------GSHHHHTCCEEEEC
T ss_pred CCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH--------------------------------HHHHHHHCCEEEEC
T ss_conf 8976899--9997357781899932766889778--------------------------------99999729857654
Q ss_pred HHHHHHH-CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 7756731-299958999983389999999999999999999932896015999999999960865424799999425079
Q 001750 520 VKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNE 598 (1018)
Q Consensus 520 ~k~dv~~-~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~~~hP~l~~~~e~~~~~~~~ 598 (1018)
...++.. .+++.....+.+++++.+...|..+.......+............ +......................
T Consensus 250 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 325 (472)
T 2fwr_A 250 FPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED----FNKIVMASGYDERAYEALRAWEE 325 (472)
T ss_dssp CHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS----STTTTTTTCCSSSSSTTTHHHHH
T ss_pred CHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH----HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 78987067678818999985899899999999999999999864754224466----89999872369889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 99998742049999999999999807809999230437999999874189818999587893899999999606899833
Q 001750 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (1018)
Q Consensus 599 ~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~id~Fn~~~s~~~ 678 (1018)
........+.|+..|.+++.. ..++++|||+++..+++.|...|. +..++|.++..+|+.+++.|+++..
T Consensus 326 ~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~--- 395 (472)
T 2fwr_A 326 ARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRF--- 395 (472)
T ss_dssp HHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSC---
T ss_pred HHHHHHCCHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHCCCC---
T ss_conf 999763373899999999985--789838999797999999999748-----6556289999999999999867998---
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 8995056653354577799899976999913589999978860999-8189999840899999999999997889
Q 001750 679 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQMTKKKMVL 752 (1018)
Q Consensus 679 v~LlsT~agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~~RiGQ~-k~V~Vyrlit~~TvEe~i~~~~~~K~~l 752 (1018)
.+|++|+++++|+|++.+++||++|++|||..++|++||++|.||. +.|.||.|++++|+|+++.++.+.|..+
T Consensus 396 ~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 396 RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp SBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred CEEEECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 889985705148462028689998999988899998763157779985399999981998537999999876505
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=350.39 Aligned_cols=252 Identities=27% Similarity=0.442 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8887775673129995899998338999999999999999999993289--60159999999999608654247999994
Q 001750 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1018)
Q Consensus 516 ~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~~--~~~~l~~il~~Lrk~~~hP~l~~~~e~~~ 593 (1018)
-+||+|++|..+||++.+.+++|+||+.|+++|+.++.+....+....+ ....+++.++.||++|+||+++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC---
T ss_conf 64164877875199977999981899999999999999999999740352128899999999999848998846873---
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 250799999874204999999999999980780999923043799999987418-9818999587893899999999606
Q 001750 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNA 672 (1018)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~~Rq~~id~Fn~ 672 (1018)
.+...|+|+..|.++|..+.+.|+|+||||+++.++++|..+|... |+++.+++|+++..+|+.+++.|++
T Consensus 90 --------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 161 (271)
T 1z5z_A 90 --------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 161 (271)
T ss_dssp --------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH
T ss_pred --------CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf --------223468999999999999986799699995519999999999987339847999799999999999998328
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 89983389950566533545777998999769999135899999788609998189999840899999999999997889
Q 001750 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 752 (1018)
Q Consensus 673 ~~s~~~v~LlsT~agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrlit~~TvEe~i~~~~~~K~~l 752 (1018)
++... +||+||++||+||||+.|++||+||++|||..++||+||+||+||+++|.||+|++.+|+||+|++++..|..+
T Consensus 162 ~~~~~-v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l 240 (271)
T 1z5z_A 162 NPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 240 (271)
T ss_dssp CTTCC-EEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHH
T ss_pred CCCCC-EEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 99997-89972235158867644899999799998518999998523238998569999854988999999999999999
Q ss_pred HHHHHCCCC--CCCCCHHHHHHHHHHCHH
Q ss_conf 999741101--148999999999962223
Q 001750 753 EHLVVGRLK--AQNINQEELDDIIRYGSK 779 (1018)
Q Consensus 753 ~~~v~~~~~--~~~~~~~~l~~ll~~g~~ 779 (1018)
...+++... ...++.+++.+++.++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (271)
T 1z5z_A 241 FKDIISSGDSWITELSTEELRKVIELSVG 269 (271)
T ss_dssp HTTGGGGTTHHHHTSCHHHHHHHHSCCCT
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHCCCCC
T ss_conf 99997167054323899999999655889
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=349.33 Aligned_cols=436 Identities=14% Similarity=0.165 Sum_probs=264.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC----CCCEEEEECC-CCHHHHHHHHHHHCC
Q ss_conf 99990689999999998213897459985998608999999999984199----9961999587-467999999998859
Q 001750 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP 357 (1018)
Q Consensus 283 ~~~L~~yQlegv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~----~~p~LIV~P~-s~l~~W~~E~~~~~p 357 (1018)
..+|+|||.+++.++ ..+.++|++++||+|||++++..+...+... .+++|||+|+ +++.||.++|.++++
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH----HCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 898779999999999----8099899996998459999999999999736556898599996989999999999999712
Q ss_pred --CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCC--CC-CCCCCEEE
Q ss_conf --99199995685788999975211799901110014676322232235666599916888961101--12-68741289
Q 001750 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQCM 432 (1018)
Q Consensus 358 --~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Viittye~l~~d~~--~l-~~i~w~~i 432 (1018)
++.+..++|+...+..... .....+|+|+||+.+..... .+ ....|++|
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~--------------------------~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEK--------------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp TTTCCEEEECCC-----CCHH--------------------------HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCCCEEEEEECCCCHHHHHHH--------------------------HCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 169559999799631257897--------------------------416999999449999999871764533678799
Q ss_pred EECCCCCCCCCCCHHHHHHHHC---------CCCCEEEEECCCCCCCHHHHHH-------HHHHHCCCCC----CCHHHH
Q ss_conf 9734433458121899999812---------2353899835899899889999-------9983257999----996889
Q 001750 433 IVDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLDELFM-------LMHFLDAGKF----GSLEEF 492 (1018)
Q Consensus 433 IvDEaHrlkn~~s~~~~~l~~l---------~~~~rllLTgTPlqN~~~EL~~-------ll~fL~p~~~----~~~~~F 492 (1018)
|+||||++.+..+ ....+..+ ...++++|||||.+++..++.. +...++...+ .....+
T Consensus 376 ViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l 454 (936)
T 4a2w_A 376 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 454 (936)
T ss_dssp EEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred EEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf 9987313599866-999999999986313788673998638855454020899999999999854971553465448999
Q ss_pred HHHHHCHH-------------HHHH----HHHHHHHHHH----------------------HHHHHHHHHHHHCCCCCEE
Q ss_conf 99983020-------------3999----9999997446----------------------7888777567312999589
Q 001750 493 QEEFKDIN-------------QEEQ----ISRLHRMLAP----------------------HLLRRVKKDVMKELPPKKE 533 (1018)
Q Consensus 493 ~~~~~~~~-------------~~~~----~~~L~~~L~p----------------------~~lRR~k~dv~~~lP~k~e 533 (1018)
...+.... .... ...++..+.. ++....+......+|..
T Consensus 455 ~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~-- 532 (936)
T 4a2w_A 455 QRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK-- 532 (936)
T ss_dssp HHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH--
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--
T ss_conf 875367762377336556757999999999999999998876655532022332257799999999998877405532--
Q ss_pred EEEEECCCHHHHHHHHHHHHHH------HHHH--HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH----HH
Q ss_conf 9998338999999999999999------9999--9328960159999999999608654247999994250799----99
Q 001750 534 LILRVELSSKQKEYYKAILTRN------YQIL--TRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNES----FK 601 (1018)
Q Consensus 534 ~iv~v~ls~~Q~~~Y~~il~~~------~~~l--~~~~~~~~~l~~il~~Lrk~~~hP~l~~~~e~~~~~~~~~----~~ 601 (1018)
..+...+..+.... ...+ ....+ .......+...+....- .+..+........ ..
T Consensus 533 --------~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~----~~~~~~~l~~~~~~~~~-~~~~~~e~~l~~~~~~~~~ 599 (936)
T 4a2w_A 533 --------EEESRICRALFICTEHLRKYNDALIISEDAR----IIDALSYLTEFFTNVKN-GPYTELEQHLTAKFQEKEP 599 (936)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
T ss_conf --------1035799999999999999888875002042----88899999999998763-2588789999998999999
Q ss_pred HH-------HHHHHHHHHHHHHHHHHH--HHCCEEEEEECHHHHHHHHHHHHHHC------------CCCEEEEECCCCH
Q ss_conf 98-------742049999999999999--80780999923043799999987418------------9818999587893
Q 001750 602 QL-------LESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGKVGG 660 (1018)
Q Consensus 602 ~l-------i~~S~Kl~~L~klL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~------------g~~~~ridG~~~~ 660 (1018)
.+ ...++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..++|+++.
T Consensus 600 ~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~ 679 (936)
T 4a2w_A 600 ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTL 679 (936)
T ss_dssp HHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCH
T ss_conf 99976405677897999999999998535899749999697999999999986373536666169965787656788899
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHH
Q ss_conf 89999999960689983389950566533545777998999769999135899999788609998189999840899999
Q 001750 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1018)
Q Consensus 661 ~~Rq~~id~Fn~~~s~~~v~LlsT~agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrlit~~TvEe 740 (1018)
.+|+.+++.|+++ +.+.+|++|+++++|||++.+++||+||++|||..++|++|| |+.+.+.+|.|++.+|+++
T Consensus 680 ~eR~~il~~Fr~~--g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 680 PSQKGVLDAFKTS--KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVE 753 (936)
T ss_dssp ----------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHH
T ss_pred HHHHHHHHHHHCC--CCEEEEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHH
T ss_conf 9999999986315--981599980726427760558989993899988999996487----7888877999986988999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 999999997889999741101148999999999
Q 001750 741 RMMQMTKKKMVLEHLVVGRLKAQNINQEELDDI 773 (1018)
Q Consensus 741 ~i~~~~~~K~~l~~~v~~~~~~~~~~~~~l~~l 773 (1018)
+.. ....|..+...++..+ +.++.+++...
T Consensus 754 ~~~-~~~~ke~~~~~~i~~l--~~~~~~~~~~~ 783 (936)
T 4a2w_A 754 NEK-CNRYKEEMMNKAVEKI--QKWDEETFAKK 783 (936)
T ss_dssp HHH-HHHHHHHHHHHHHHHH--HTSCHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHH--HCCCHHHHHHH
T ss_conf 999-9889999999999986--44799999999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=338.12 Aligned_cols=434 Identities=14% Similarity=0.165 Sum_probs=265.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC----CCCEEEEECC-CCHHHHHHHHHHHC
Q ss_conf 899990689999999998213897459985998608999999999984199----9961999587-46799999999885
Q 001750 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWA 356 (1018)
Q Consensus 282 ~~~~L~~yQlegv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~----~~p~LIV~P~-s~l~~W~~E~~~~~ 356 (1018)
...+|+|||.+++.++ ..+.++|++++||+|||++++..+...+... .+++|||||+ +++.||.++|.+++
T Consensus 245 g~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 245 ETKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ---CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH----HHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 8899999999999999----809998999699972999999999999984665679969999698999999999999861
Q ss_pred C--CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCC--CC-CCCCCEE
Q ss_conf 9--99199995685788999975211799901110014676322232235666599916888961101--12-6874128
Q 001750 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQC 431 (1018)
Q Consensus 357 p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Viittye~l~~d~~--~l-~~i~w~~ 431 (1018)
+ ++.+..++|........... ....+|+|+||+.+..... .+ ....|++
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 374 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTL 374 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHH--------------------------HHTCSEEEECHHHHHHHHHSSSCCCGGGCSE
T ss_pred CCCCCEEEEEECCCCHHHHHHHH--------------------------HCCCCEEEECHHHHHHHHHHCCCCCCCCCCE
T ss_conf 43794699996996232469974--------------------------0799999976699999998265465133778
Q ss_pred EEECCCCCCCCCCCHHHHHHHHC---------CCCCEEEEECCCCCCCHHHHHH-------HHHHHCCCC----CCCHHH
Q ss_conf 99734433458121899999812---------2353899835899899889999-------998325799----999688
Q 001750 432 MIVDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLDELFM-------LMHFLDAGK----FGSLEE 491 (1018)
Q Consensus 432 iIvDEaHrlkn~~s~~~~~l~~l---------~~~~rllLTgTPlqN~~~EL~~-------ll~fL~p~~----~~~~~~ 491 (1018)
||+||||++.+..+ ....+..+ ...++++|||||.+++..++.. +...++... ......
T Consensus 375 iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~ 453 (797)
T 4a2q_A 375 MIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQE 453 (797)
T ss_dssp EEETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHH
T ss_pred EEEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 99988635588764-99999999997631478878599972775545522489999999999985498488545431788
Q ss_pred HHHHHHCHH-----------------HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHCCCCCE
Q ss_conf 999983020-----------------3999999999744678----------------------8877756731299958
Q 001750 492 FQEEFKDIN-----------------QEEQISRLHRMLAPHL----------------------LRRVKKDVMKELPPKK 532 (1018)
Q Consensus 492 F~~~~~~~~-----------------~~~~~~~L~~~L~p~~----------------------lRR~k~dv~~~lP~k~ 532 (1018)
+...+.... .......++..+..++ ....+......++.
T Consensus 454 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 531 (797)
T 4a2q_A 454 LQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED-- 531 (797)
T ss_dssp HHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSS--
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC--
T ss_conf 997358885488845777786789999999999999999987567765300001140567789999999877740343--
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH------
Q ss_conf 999983389999999999999999------99993289601599999999996086542479999942507999------
Q 001750 533 ELILRVELSSKQKEYYKAILTRNY------QILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESF------ 600 (1018)
Q Consensus 533 e~iv~v~ls~~Q~~~Y~~il~~~~------~~l~~~~~~~~~l~~il~~Lrk~~~hP~l~~~~e~~~~~~~~~~------ 600 (1018)
...+...+..+..... ..+... ...........++..+.+..-. . .......+
T Consensus 532 --------~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~----~~~~~~~l~~~~~~ 596 (797)
T 4a2q_A 532 --------KEEESRICRALFICTEHLRKYNDALIIS--EDARIIDALSYLTEFFTNVKNG-P----YTELEQHLTAKFQE 596 (797)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHT-T----CCHHHHHHHHHHHT
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHCC-C----CCHHHHHHHHHHHH
T ss_conf --------2025679999999999999999887654--1325888999999999987504-7----66899999999999
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHH--HHCCEEEEEECHHHHHHHHHHHHHH------------CCCCEEEEECC
Q ss_conf ---------998742049999999999999--8078099992304379999998741------------89818999587
Q 001750 601 ---------KQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTF------------KKWQYERIDGK 657 (1018)
Q Consensus 601 ---------~~li~~S~Kl~~L~klL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~------------~g~~~~ridG~ 657 (1018)
......++|+..|.++|.... ..++|+||||+++.+++.|.++|.. .|..+..++|+
T Consensus 597 ~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~ 676 (797)
T 4a2q_A 597 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 676 (797)
T ss_dssp THHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-----------
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 99999876307888995999999999998505899708999795899999999997475646655218984477545789
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf 89389999999960689983389950566533545777998999769999135899999788609998189999840899
Q 001750 658 VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1018)
Q Consensus 658 ~~~~~Rq~~id~Fn~~~s~~~v~LlsT~agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrlit~~T 737 (1018)
++..+|+.+++.|++++ .+.+|++|+++++|||++.+++||+||++|||..++|++|| |+.+++.+|.|++.++
T Consensus 677 ~~~~eR~~~l~~F~~~g--~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 677 MTLPSQKGVLDAFKTSK--DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTE 750 (797)
T ss_dssp -------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHH
T ss_pred CCHHHHHHHHHHHHCCC--CCEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCC
T ss_conf 89999999999851369--70499974805447975108989994899988999985388----8787865999972876
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99999999999788999974110114899999999
Q 001750 738 IEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDD 772 (1018)
Q Consensus 738 vEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~l~~ 772 (1018)
++++ ......|..+...++..+ +.++.+++..
T Consensus 751 ~ee~-~~~~~~ke~~~~~~i~~l--~~~~~~~~~~ 782 (797)
T 4a2q_A 751 VVEN-EKCNRYKEEMMNKAVEKI--QKWDEETFAK 782 (797)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH--HCCCHHHHHH
T ss_conf 8899-998889999999999987--4579899999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=328.35 Aligned_cols=432 Identities=14% Similarity=0.180 Sum_probs=264.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC----CCCEEEEECC-CCHHHHHHHHHHHCC-
Q ss_conf 9990689999999998213897459985998608999999999984199----9961999587-467999999998859-
Q 001750 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (1018)
Q Consensus 284 ~~L~~yQlegv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l~~l~~~~----~~p~LIV~P~-s~l~~W~~E~~~~~p- 357 (1018)
.+|+|||.+++.++ ..+.++|++++||+|||++++..+....... .+++|||||+ +++.||.+++.++++
T Consensus 6 ~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 78779999999999----74998999819997189999999999998374567986999928899999999999987240
Q ss_pred -CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCHHHHHHCCC--CC-CCCCCEEEE
Q ss_conf -99199995685788999975211799901110014676322232235666599916888961101--12-687412899
Q 001750 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQCMI 433 (1018)
Q Consensus 358 -~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Viittye~l~~d~~--~l-~~i~w~~iI 433 (1018)
++.+..++|........... ....+|+|+||+.+..... .+ ....|++||
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vV 135 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKV--------------------------IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 135 (556)
T ss_dssp GTCCEEECCCC-----CHHHH--------------------------HHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEE
T ss_pred CCCEEEEEECCCCCCHHHHHH--------------------------HCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 694599982898742228986--------------------------179999998899999999837502503077999
Q ss_pred ECCCCCCCCCCCHHHHHHHHC---------CCCCEEEEECCCCCCCHH-------HHHHHHHHHCCCCCC----CHHHHH
Q ss_conf 734433458121899999812---------235389983589989988-------999999832579999----968899
Q 001750 434 VDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLD-------ELFMLMHFLDAGKFG----SLEEFQ 493 (1018)
Q Consensus 434 vDEaHrlkn~~s~~~~~l~~l---------~~~~rllLTgTPlqN~~~-------EL~~ll~fL~p~~~~----~~~~F~ 493 (1018)
+||||++.+... ....+..+ ...++++|||||.+++.. .+..+...++...+. ....+.
T Consensus 136 iDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 214 (556)
T 4a2p_A 136 FDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 214 (556)
T ss_dssp EETGGGCSTTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred EECCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHCCHHHHH
T ss_conf 988753588645-9999999998530136888769999478566751669999999999998539848433320267787
Q ss_pred HHHHCHH-------------HHHHH----HHHHHHHHH----------------------HHHHHHHHHHHHCCCCCEEE
Q ss_conf 9983020-------------39999----999997446----------------------78887775673129995899
Q 001750 494 EEFKDIN-------------QEEQI----SRLHRMLAP----------------------HLLRRVKKDVMKELPPKKEL 534 (1018)
Q Consensus 494 ~~~~~~~-------------~~~~~----~~L~~~L~p----------------------~~lRR~k~dv~~~lP~k~e~ 534 (1018)
..+.... ....+ ..++..+.. .+....+......+|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----- 289 (556)
T 4a2p_A 215 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----- 289 (556)
T ss_dssp HHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC--------
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----
T ss_conf 427998537998278767759999999999999999888632012103333443356789999999987764054-----
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH------H--HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH-----
Q ss_conf 998338999999999999999999------9--932896015999999999960865424799999425079999-----
Q 001750 535 ILRVELSSKQKEYYKAILTRNYQI------L--TRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFK----- 601 (1018)
Q Consensus 535 iv~v~ls~~Q~~~Y~~il~~~~~~------l--~~~~~~~~~l~~il~~Lrk~~~hP~l~~~~e~~~~~~~~~~~----- 601 (1018)
....+...|..+....... + ....+. ......+...+....- . ........+.
T Consensus 290 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~-~----~~~~~~~~~~~~~~~ 355 (556)
T 4a2p_A 290 -----DKEEESRICRALFICTEHLRKYNDALIISEDARI----IDALSYLTEFFTNVKN-G----PYTELEQHLTAKFQE 355 (556)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHH-S----CCCHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-C----CCCHHHHHHHHHHHH
T ss_conf -----3201678999999999999999999988611207----8999999999999873-3----798789999998766
Q ss_pred ------H----HHHHHHHHHHHHHHHHHHH--HHCCEEEEEECHHHHHHHHHHHHHHC------------CCCEEEEECC
Q ss_conf ------9----8742049999999999999--80780999923043799999987418------------9818999587
Q 001750 602 ------Q----LLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGK 657 (1018)
Q Consensus 602 ------~----li~~S~Kl~~L~klL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~------------g~~~~ridG~ 657 (1018)
. ....++|+..|.++|.... ..++|+|||++++.+++.|.++|... |..+..++|+
T Consensus 356 ~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~ 435 (556)
T 4a2p_A 356 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 435 (556)
T ss_dssp THHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 78876421037899996999999999998347998549999765899999999998587755000147873677655656
Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf 89389999999960689983389950566533545777998999769999135899999788609998189999840899
Q 001750 658 VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1018)
Q Consensus 658 ~~~~~Rq~~id~Fn~~~s~~~v~LlsT~agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrlit~~T 737 (1018)
++..+|+.+++.|++++ .+.+|++|+++++|||++.+++||+||++|||..++|++|| |+.+++.+|.|++.++
T Consensus 436 ~~~~~R~~~~~~F~~~g--~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 436 MTLPSQKGVLDAFKTSK--DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTE 509 (556)
T ss_dssp --------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHH
T ss_pred CCHHHHHHHHHHHCCCC--CEEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCC
T ss_conf 69899999999840469--65899976704337775217889991899978899886387----8788841899982763
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 9999999999978899997411011489999999999
Q 001750 738 IEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDII 774 (1018)
Q Consensus 738 vEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~l~~ll 774 (1018)
++++ ......|..+...++..+ +.++.+++...+
T Consensus 510 ~~~~-~~~~~~k~~~~~~~i~~i--~~~~~~~~~~~i 543 (556)
T 4a2p_A 510 VVEN-EKCNRYKEEMMNKAVEKI--QKWDEETFAKKI 543 (556)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHH--HTSCHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
T ss_conf 6777-775579999999999972--068967899999
Done!