Query 001752
Match_columns 1018
No_of_seqs 757 out of 6404
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 15:51:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001752.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1051-1055//hhsearch_pdb/001752hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 691.2 39.7 595 28-625 6-751 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 537.6 29.9 493 98-596 50-556 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 530.1 40.3 553 73-625 24-634 (680)
4 3t6q_A CD180 antigen; protein- 1.0 1 1 500.1 29.6 521 74-619 33-565 (606)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 497.8 40.9 519 63-596 14-565 (844)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 493.5 38.1 530 79-611 9-594 (680)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 492.6 31.8 545 13-596 3-565 (606)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 491.7 41.0 527 77-620 7-566 (844)
9 4eco_A Uncharacterized protein 1.0 1 1 483.7 21.8 535 31-618 27-630 (636)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 483.7 28.2 515 74-620 32-564 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=691.23 Aligned_cols=595 Identities=33% Similarity=0.494 Sum_probs=468.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCC---CC-------------
Q ss_conf 01030889999999876067999996897899998312658738999889997599988764---32-------------
Q 001752 28 AKTALNDELLALLSIKAGLVDPLNSLHDWKLPSAHCNWTGVWCNSNGAVEKLDLSHMNLSGC---VS------------- 91 (1018)
Q Consensus 28 ~~~~~~~~~~~ll~~k~~~~d~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~---~~------------- 91 (1018)
+..+.++|+.||++||+++.||. .+++|..+++||.|.||+|+ .++|+.|||+++++.+. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 56687899999999996678962-14687899987688413878-99278987789986775576696573168022467
Q ss_pred ----------CCCCCCCCCCEEECCCCCCCCCCCH--HHHCCCCCCEEEEEECCCCCCCCCCC-CCCCCCCEECCCCCCC
Q ss_conf ----------2235688888887688876788882--11078998699864034589886445-6778883631689877
Q 001752 92 ----------DHFQRLKSLTSLNLCCNGLFSSLPN--SLANLTSLKRFDVSQNFLNGSFPAGL-GGAAGLTFLNASGNNF 158 (1018)
Q Consensus 92 ----------~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l 158 (1018)
..|+.+++|++|+|++|.+.+.+|. .+.++++|++|+|++|.+.+..|..+ ..+++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 86888678703324578899898989857870789678727889998989688267747977856388999898979835
Q ss_pred CCCCCCC---C----------------------CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 7633112---3----------------------56666536712485347666612346464453420164258988762
Q 001752 159 SGFLLED---L----------------------GNATSLETLDLRGSFFQGSIPVSFKNLQKLKFLGLSGNNLTGKIPRE 213 (1018)
Q Consensus 159 ~~~~~~~---l----------------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 213 (1018)
++..+.. + ..+++|++|++++|.+.+.+|. +.++++|++|++++|.+++.+|..
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH
T ss_pred CCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 8858715566435898898989788034657845478689898928827887711-126999998979488587816577
Q ss_pred CCCCCCHHHHHCCCCCCCCC----------------------CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 46455301322001335788----------------------88243475-66432123242267447600149785446
Q 001752 214 LGQLSSMETMILAYNEFDGE----------------------IPVEFGNL-TNLKYLDLAVGNLGGKIPAELGRLELLEI 270 (1018)
Q Consensus 214 l~~l~~L~~L~L~~n~l~~~----------------------~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 270 (1018)
++.+++|++|++++|.+.+. +|..+... ++|++|++++|.+.+..|..++.+++|+.
T Consensus 243 l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp TTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
T ss_conf 74488889898988866571672436878989791785577258888844686889989689677842367755877667
Q ss_pred EECCCCCCCCCCCHH-HCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEEEC
Q ss_conf 870489678668821-11888777665537877644697422566-7735643357353535899888--8744547731
Q 001752 271 MFLYQNNFQGRLPAE-IGNITSLQLLDLSYNMLSHEIPAEITQLK-NLQLLNLMCNQLSGHVPAGLGG--LTQLEVLELW 346 (1018)
Q Consensus 271 L~l~~n~~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~ 346 (1018)
|+++.|.+.+.+|.. +..+++|+.|++++|.+.+.+|..+..++ +|++|++++|.+.+..+..+.. +++|+.|+++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECC
T ss_conf 78978852573797887248888788484784376230989863227719986278747876766653324776189897
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 57244689967788998856664464024645201248998852204344577887543345664418862477546887
Q 001752 347 NNSLSGPLPVDLGKNSPLQWLDLSSNSFSGEIPASLCNGGNLTKLILFNNAFSGPIPVSLSTCHSLVRVRMQNNQLSGTI 426 (1018)
Q Consensus 347 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 426 (1018)
+|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 78465424877756898798989588466854677744998898989788154718978828777329990199513758
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----
Q ss_conf 6567875434625442455657775366898752367614772357897000289876302345773347897545----
Q 001752 427 PVGFGRLEKLQRLELANNSLTGGITDDIASSTSLSFIDISRNHLRSSLPSTILSIPNLQTFIVSNNNLVGEIPDQF---- 502 (1018)
Q Consensus 427 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---- 502 (1018)
|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 87881699899897539951896876885689999898978943374887770889899898988846882795786042
Q ss_pred ------------------------------------------------------------------CCCCCCCEEECCCC
Q ss_conf ------------------------------------------------------------------78886553202362
Q 001752 503 ------------------------------------------------------------------QDCPSLSVLDLSSN 516 (1018)
Q Consensus 503 ------------------------------------------------------------------~~l~~L~~L~Ls~N 516 (1018)
..+++|+.||+++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCC
T ss_conf 12232013454211113444322223322210013556323200232110011331004627433403356657978588
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 03688897210002345163246201387310002588451440556523688797888989995499308805577899
Q 001752 517 YFSGSIPSSIASCEKLVNLNLRNNQLTGDIPKAISMMPTLAILDLSNNSLTGGIPENFGASPALEVLNVSYNRLEGPVPA 596 (1018)
Q Consensus 517 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~ 596 (1018)
++++.+|..+++++.|+.|+|++|++++.+|..+..++.|+.|||++|++++.+|..+..++.|++|++++|+++|.+|.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 01555877884141578784868803887896784777899898978802386886775788789787968815560899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 74334447778888867888888898899
Q 001752 597 NGVLRTINRGDLAGNAGLCGGVLHPCSRY 625 (1018)
Q Consensus 597 ~~~~~~~~~~~~~~N~~~C~~~l~~~~~~ 625 (1018)
.+++.++...+|.|||++||.|+++|...
T Consensus 723 ~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp SSSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred CHHHCCCCHHHHCCCCHHCCCCCCCCCCC
T ss_conf 60102489777569832108877678887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=537.64 Aligned_cols=493 Identities=33% Similarity=0.486 Sum_probs=414.8
Q ss_pred CCCCEEECCCCCCCCC---CCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC--CCCCCCCC
Q ss_conf 8888887688876788---882110789986998640345898864456778883631689877763311--23566665
Q 001752 98 KSLTSLNLCCNGLFSS---LPNSLANLTSLKRFDVSQNFLNGSFPAGLGGAAGLTFLNASGNNFSGFLLE--DLGNATSL 172 (1018)
Q Consensus 98 ~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L 172 (1018)
.+++.|+|+++.+.+. ++.++.++++|+.++++.+.+. .+|..++.+++|++|+|++|.+.+.++. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 92789877899867755766965731680224678688867-87033245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCCC---CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 367124853476666123-46464453420164258988762---46455301322001335788882434756643212
Q 001752 173 ETLDLRGSFFQGSIPVSF-KNLQKLKFLGLSGNNLTGKIPRE---LGQLSSMETMILAYNEFDGEIPVEFGNLTNLKYLD 248 (1018)
Q Consensus 173 ~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 248 (1018)
++|+|++|.+.+..|..+ .++++|++|+|++|.+++..+.. +.++++|++|++++|.+.+..+ +..+++|++|+
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 206 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEE
T ss_conf 9898968826774797785638899989897983588587155664358988989897880346578--45478689898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 32422674476001497854468704896786688211188877766553787764469742256677356433573535
Q 001752 249 LAVGNLGGKIPAELGRLELLEIMFLYQNNFQGRLPAEIGNITSLQLLDLSYNMLSHEIPAEITQLKNLQLLNLMCNQLSG 328 (1018)
Q Consensus 249 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 328 (1018)
+++|.+.+..|. ++.+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|.. .+++|++|++++|.+++
T Consensus 207 Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred CCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCC
T ss_conf 928827887711-126999998979488587816577744888898989888665716724--36878989791785577
Q ss_pred CCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 358998888-74454773157244689967788998856664464024645201-2489988522043445778875433
Q 001752 329 HVPAGLGGL-TQLEVLELWNNSLSGPLPVDLGKNSPLQWLDLSSNSFSGEIPAS-LCNGGNLTKLILFNNAFSGPIPVSL 406 (1018)
Q Consensus 329 ~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~ 406 (1018)
.+|..+... ++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+..|..+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred CCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 25888884468688998968967784236775587766778978852573797887248888788484784376230989
Q ss_pred CCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 4566-4418862477546887656787--543462544245565777536689875236761477235789700028987
Q 001752 407 STCH-SLVRVRMQNNQLSGTIPVGFGR--LEKLQRLELANNSLTGGITDDIASSTSLSFIDISRNHLRSSLPSTILSIPN 483 (1018)
Q Consensus 407 ~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~ 483 (1018)
..+. +|+.|++++|++++.++..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 443 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred HHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 86322771998627874787676665332477618989778465424877756898798989588466854677744998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 63023457733478975457888655320236203688897210002345163246201387310002588451440556
Q 001752 484 LQTFIVSNNNLVGEIPDQFQDCPSLSVLDLSSNYFSGSIPSSIASCEKLVNLNLRNNQLTGDIPKAISMMPTLAILDLSN 563 (1018)
Q Consensus 484 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 563 (1018)
|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..+.++++|+.|++++|++.+.+|.++..+++|+.|+|++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 89898978815471897882877732999019951375887881699899897539951896876885689999898978
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 523688797888989995499308805577899
Q 001752 564 NSLTGGIPENFGASPALEVLNVSYNRLEGPVPA 596 (1018)
Q Consensus 564 N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~ 596 (1018)
|++++.+|..+..+++|+.|++++|++.+.+|.
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf 943374887770889899898988846882795
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=530.09 Aligned_cols=553 Identities=22% Similarity=0.196 Sum_probs=477.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEC
Q ss_conf 99889997599988764322235688888887688876788882110789986998640345898864456778883631
Q 001752 73 NGAVEKLDLSHMNLSGCVSDHFQRLKSLTSLNLCCNGLFSSLPNSLANLTSLKRFDVSQNFLNGSFPAGLGGAAGLTFLN 152 (1018)
Q Consensus 73 ~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 152 (1018)
+.+++.|+|++++++++.+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|+.+++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 88876888989977875978871787675887889964856977874066768888999856756854530388889898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC--CCCCHHHHHCCCCCC
Q ss_conf 689877763311235666653671248534766661234646445342016425898876246--455301322001335
Q 001752 153 ASGNNFSGFLLEDLGNATSLETLDLRGSFFQGSIPVSFKNLQKLKFLGLSGNNLTGKIPRELG--QLSSMETMILAYNEF 230 (1018)
Q Consensus 153 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l 230 (1018)
+++|.+.++.+..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCC
T ss_conf 98996685396674156788889898995246672111245567779745884365297886244666321798889825
Q ss_pred CCCCCCCCCCC---------------------------CCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCC
Q ss_conf 78888243475---------------------------66432123242267447600149785--44687048967866
Q 001752 231 DGEIPVEFGNL---------------------------TNLKYLDLAVGNLGGKIPAELGRLEL--LEIMFLYQNNFQGR 281 (1018)
Q Consensus 231 ~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~~ 281 (1018)
++..+..+..+ ++|+.|++++|.+.+..+..+..++. |+.|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 65581555322344554305664680567778777531510088745774364686675146767788877878876756
Q ss_pred CCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC---------CCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 88211188877766553787764469742256677356433573535---------358998888744547731572446
Q 001752 282 LPAEIGNITSLQLLDLSYNMLSHEIPAEITQLKNLQLLNLMCNQLSG---------HVPAGLGGLTQLEVLELWNNSLSG 352 (1018)
Q Consensus 282 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------~~~~~l~~l~~L~~L~L~~n~l~~ 352 (1018)
.+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+ .....+..+++|++|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC
T ss_conf 80211674105685577885676586562678885577363313213333355454386562467778888798982687
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCC--CCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-
Q ss_conf 8996778899885666446402464--5201248--9988522043445778875433456644188624775468876-
Q 001752 353 PLPVDLGKNSPLQWLDLSSNSFSGE--IPASLCN--GGNLTKLILFNNAFSGPIPVSLSTCHSLVRVRMQNNQLSGTIP- 427 (1018)
Q Consensus 353 ~~~~~l~~~~~L~~L~Ls~n~l~~~--~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 427 (1018)
..+..|..+++|+.|++++|.+... ....+.. .+.|+.|++++|++.+..+..+..+++|+.|++++|.+.+.++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 88557406568728988798014432353220245568676688999977767754420778888886778757543575
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56787543462544245565777536689875236761477235--7897000289876302345773347897545788
Q 001752 428 VGFGRLEKLQRLELANNSLTGGITDDIASSTSLSFIDISRNHLR--SSLPSTILSIPNLQTFIVSNNNLVGEIPDQFQDC 505 (1018)
Q Consensus 428 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 505 (1018)
..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..|..+++|+.|++++|.+++..+..|..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 53257546127844899754227645500754310110146442256677645557878999899998776794463455
Q ss_pred CCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 865532023620368889--------721000234516324620138731000258845144055652368879788898
Q 001752 506 PSLSVLDLSSNYFSGSIP--------SSIASCEKLVNLNLRNNQLTGDIPKAISMMPTLAILDLSNNSLTGGIPENFGAS 577 (1018)
Q Consensus 506 ~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 577 (1018)
++|+.|++++|++++..+ ..+.++++|+.|++++|+++...+..|..+++|+.|+|++|++++..+..|..+
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 34688858899730000000467741423379988888899997887797773466675223899997776797683789
Q ss_pred CCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 999549930880557789974--334447778888867888888-898899
Q 001752 578 PALEVLNVSYNRLEGPVPANG--VLRTINRGDLAGNAGLCGGVL-HPCSRY 625 (1018)
Q Consensus 578 ~~L~~l~l~~N~l~~~~~~~~--~~~~~~~~~~~~N~~~C~~~l-~~~~~~ 625 (1018)
++|+.|++++|++++..+... .+..++.+++.+|||.|+|+. ..-..|
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 888889899996870596683011466577983189702577668999999
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=500.10 Aligned_cols=521 Identities=21% Similarity=0.215 Sum_probs=345.7
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEECC
Q ss_conf 98899975999887643222356888888876888767888821107899869986403458988644567788836316
Q 001752 74 GAVEKLDLSHMNLSGCVSDHFQRLKSLTSLNLCCNGLFSSLPNSLANLTSLKRFDVSQNFLNGSFPAGLGGAAGLTFLNA 153 (1018)
Q Consensus 74 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 153 (1018)
..++.|+|++|.++++.+..|+++++|++|+|++|.+..+.|.+|.++++|++|+|++|.+++..|..++.+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHH--HHHCCCCCCC
Q ss_conf 89877763311235666653671248534766661234646445342016425898876246455301--3220013357
Q 001752 154 SGNNFSGFLLEDLGNATSLETLDLRGSFFQGSIPVSFKNLQKLKFLGLSGNNLTGKIPRELGQLSSME--TMILAYNEFD 231 (1018)
Q Consensus 154 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~ 231 (1018)
++|.+++..+..++++++|++|++++|.+.+.....+.++++|++|++++|.+++..+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred CCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 12676657810122378223898879834114765456876568777656844554965633221564038966798147
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 88882434756643212324226744760014978544687048967866882111888777665537877644697422
Q 001752 232 GEIPVEFGNLTNLKYLDLAVGNLGGKIPAELGRLELLEIMFLYQNNFQGRLPAEIGNITSLQLLDLSYNMLSHEIPAEIT 311 (1018)
Q Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 311 (1018)
+..+..+.. .+|+.|+++.|. ..+..+..+..+....+....+. .+...+ + .+..+.
T Consensus 193 ~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~-----------~~~~~~-----i---~~~~~~ 249 (606)
T 3t6q_A 193 GIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE-----------DMDDED-----I---SPAVFE 249 (606)
T ss_dssp EECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT-----------TSCCCC-----C---CGGGGG
T ss_pred CCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHHC-----------CCCCCC-----C---CHHHHC
T ss_conf 548667300-100135567726---67777651335644220020110-----------264122-----6---866743
Q ss_pred CCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 566--773564335735353589988887445477315724468996778899885666446402464520124899885
Q 001752 312 QLK--NLQLLNLMCNQLSGHVPAGLGGLTQLEVLELWNNSLSGPLPVDLGKNSPLQWLDLSSNSFSGEIPASLCNGGNLT 389 (1018)
Q Consensus 312 ~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 389 (1018)
.+. +|+.|++++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred HHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCC
T ss_conf 032075059994457658557777445667888956288267-7782141654688897716876867602330157689
Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 22043445778875-43345664418862477546887--6567875434625442455657775366898752367614
Q 001752 390 KLILFNNAFSGPIP-VSLSTCHSLVRVRMQNNQLSGTI--PVGFGRLEKLQRLELANNSLTGGITDDIASSTSLSFIDIS 466 (1018)
Q Consensus 390 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~Ls 466 (1018)
.|++++|.+.+..+ ..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 88898997444346245506675898878899666456752210567888989898996775788873477457768788
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCC
Q ss_conf 7723578970-002898763023457733478975457888655320236203688---897210002345163246201
Q 001752 467 RNHLRSSLPS-TILSIPNLQTFIVSNNNLVGEIPDQFQDCPSLSVLDLSSNYFSGS---IPSSIASCEKLVNLNLRNNQL 542 (1018)
Q Consensus 467 ~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l 542 (1018)
+|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++. .+..+..+++|+.|++++|++
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCC
T ss_conf 88677756521241765588898989855776877873788788898989988854345431240488766887999966
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 387310002588451440556523688797888989995499308805577899-74334447778888867888888
Q 001752 543 TGDIPKAISMMPTLAILDLSNNSLTGGIPENFGASPALEVLNVSYNRLEGPVPA-NGVLRTINRGDLAGNAGLCGGVL 619 (1018)
Q Consensus 543 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~N~~~C~~~l 619 (1018)
++..|..|..+++|+.|+|++|++++..|..+..++.| .|++++|++++..|. ...+..++.+++.+|||.|+|+.
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 70686463265678889898980686896684756651-898768941426876625677878896779986166775
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=497.79 Aligned_cols=519 Identities=24% Similarity=0.253 Sum_probs=398.8
Q ss_pred CEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 31265873899988999759998876432223568888888768887678-88821107899869986403458988644
Q 001752 63 CNWTGVWCNSNGAVEKLDLSHMNLSGCVSDHFQRLKSLTSLNLCCNGLFS-SLPNSLANLTSLKRFDVSQNFLNGSFPAG 141 (1018)
Q Consensus 63 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 141 (1018)
|+|+.|++ ....++.|||++|.|+++.+..|.++++|++|+|++|.+.. +.|.+|.++++|++|+|++|.+.+..|..
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCCC-CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 99777898-99986888887786783296677662137088678997744419778537877888879899585319767
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCC-
Q ss_conf 567788836316898777633112--3566665367124853476666-123464644534201642589887624645-
Q 001752 142 LGGAAGLTFLNASGNNFSGFLLED--LGNATSLETLDLRGSFFQGSIP-VSFKNLQKLKFLGLSGNNLTGKIPRELGQL- 217 (1018)
Q Consensus 142 l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l- 217 (1018)
|+.+++|++|+|++|.+.+..+.. ++++++|++|+|++|.+.+..+ ..|+++++|++|+|++|.+++..+..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCC
T ss_conf 15786658701767889734046764556679998889878642325665576388989898989847766788753556
Q ss_pred -CCHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCC---CCCCEEECCCC---------CC
Q ss_conf -53013220013357888824347566------4321232422674476001497---85446870489---------67
Q 001752 218 -SSMETMILAYNEFDGEIPVEFGNLTN------LKYLDLAVGNLGGKIPAELGRL---ELLEIMFLYQN---------NF 278 (1018)
Q Consensus 218 -~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~l~~n---------~~ 278 (1018)
++|+.|+++.|.+.+..+..++.+.+ |+.|+++.|.+.+..+..+... ..++.+.+..+ .+
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 77503578978866655455332237722357400796578868656778887642744100112121223466444566
Q ss_pred CCCCCHHHCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 86688211188--8777665537877644697422566773564335735353589988887445477315724468996
Q 001752 279 QGRLPAEIGNI--TSLQLLDLSYNMLSHEIPAEITQLKNLQLLNLMCNQLSGHVPAGLGGLTQLEVLELWNNSLSGPLPV 356 (1018)
Q Consensus 279 ~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 356 (1018)
.+.....+..+ ++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..|.++++|++|++++|.+.+..+.
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 88985565255547861898979945515863452589999998979818987968836888999898989978851878
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 77889988566644640246452012489988522043445778875433456644188624775468876567875434
Q 001752 357 DLGKNSPLQWLDLSSNSFSGEIPASLCNGGNLTKLILFNNAFSGPIPVSLSTCHSLVRVRMQNNQLSGTIPVGFGRLEKL 436 (1018)
Q Consensus 357 ~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 436 (1018)
.|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+.. .+++|+.+++++|+++ .+|.. ...+
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l 403 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTA 403 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTC
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-----CCCCCCHHCCCCCCCC-CCCCC---CCCC
T ss_conf 8468999998989899877628666137888999889899778616-----8898232005899723-14554---5543
Q ss_pred CEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCC
Q ss_conf 6254424556577753-668987523676147723578970-0028987630234577334-----78975457888655
Q 001752 437 QRLELANNSLTGGITD-DIASSTSLSFIDISRNHLRSSLPS-TILSIPNLQTFIVSNNNLV-----GEIPDQFQDCPSLS 509 (1018)
Q Consensus 437 ~~L~L~~N~l~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~ 509 (1018)
+.|++++|.+.+.... .+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..|..+++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred CEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 12214567534575566651277666666778712555543335668731002477773644101355355544755365
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 32023620368889721000234516324620138731000258845144055652368879788898999549930880
Q 001752 510 VLDLSSNYFSGSIPSSIASCEKLVNLNLRNNQLTGDIPKAISMMPTLAILDLSNNSLTGGIPENFGASPALEVLNVSYNR 589 (1018)
Q Consensus 510 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~ 589 (1018)
.|+|++|++++..+..|.++++|+.|+|++|++++..+..+. ++|+.|||++|++++..|..| ++|+.+++++|+
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np 558 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNK 558 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEEC
T ss_pred EEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCC
T ss_conf 777889856553955704501221569999978745710110--045588898884788896683---776889931997
Q ss_pred CCCCCCC
Q ss_conf 5577899
Q 001752 590 LEGPVPA 596 (1018)
Q Consensus 590 l~~~~~~ 596 (1018)
+.|.++.
T Consensus 559 ~~C~c~~ 565 (844)
T 3j0a_A 559 FICECEL 565 (844)
T ss_dssp CCCSSSC
T ss_pred CCCCCCC
T ss_conf 0253661
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=493.50 Aligned_cols=530 Identities=22% Similarity=0.231 Sum_probs=234.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 97599988764322235688888887688876788882110789986998640345898864456778883631689877
Q 001752 79 LDLSHMNLSGCVSDHFQRLKSLTSLNLCCNGLFSSLPNSLANLTSLKRFDVSQNFLNGSFPAGLGGAAGLTFLNASGNNF 158 (1018)
Q Consensus 79 l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 158 (1018)
+|.++++++.++ ..+. +++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..++.+++|++|++++|.+
T Consensus 9 ~~cs~~~L~~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 9 ADCSHLKLTQVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EECCSSCCSSCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCC-CCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 487779805264-1248--8876888989977875978871787675887889964856977874066768888999856
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 76331123566665367124853476666123464644534201642589887624645530132200133578888243
Q 001752 159 SGFLLEDLGNATSLETLDLRGSFFQGSIPVSFKNLQKLKFLGLSGNNLTGKIPRELGQLSSMETMILAYNEFDGEIPVEF 238 (1018)
Q Consensus 159 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 238 (1018)
+.+.+..|+++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 75685453038888989898996685396674156788889898995246672111245567779745884365297886
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCCCCCCC---------------------------CCCCEEECCCCCCCCCCCHHHCCC
Q ss_conf 4--75664321232422674476001497---------------------------854468704896786688211188
Q 001752 239 G--NLTNLKYLDLAVGNLGGKIPAELGRL---------------------------ELLEIMFLYQNNFQGRLPAEIGNI 289 (1018)
Q Consensus 239 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~~~~~~p~~l~~l 289 (1018)
. .+++|+.|+++.|.+.+..+..+..+ ++|+.|++++|.+.+..|..+..+
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCC
T ss_conf 24466632179888982565581555322344554305664680567778777531510088745774364686675146
Q ss_pred CC--CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-----CCC----CCC
Q ss_conf 87--7766553787764469742256677356433573535358998888744547731572446-----899----677
Q 001752 290 TS--LQLLDLSYNMLSHEIPAEITQLKNLQLLNLMCNQLSGHVPAGLGGLTQLEVLELWNNSLSG-----PLP----VDL 358 (1018)
Q Consensus 290 ~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~----~~l 358 (1018)
+. |+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|...+ .+| ..|
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHC
T ss_conf 76778887787887675680211674105685577885676586562678885577363313213333355454386562
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC--CCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 889988566644640246452012489988522043445778--875433456--6441886247754688765678754
Q 001752 359 GKNSPLQWLDLSSNSFSGEIPASLCNGGNLTKLILFNNAFSG--PIPVSLSTC--HSLVRVRMQNNQLSGTIPVGFGRLE 434 (1018)
Q Consensus 359 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~ 434 (1018)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. .....|..+ .+|+.|++++|++++..+..|..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCC
T ss_conf 46777888879898268788557406568728988798014432353220245568676688999977767754420778
Q ss_pred CCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCEE
Q ss_conf 3462544245565777-536689875236761477235789700028987630234577334--7897545788865532
Q 001752 435 KLQRLELANNSLTGGI-TDDIASSTSLSFIDISRNHLRSSLPSTILSIPNLQTFIVSNNNLV--GEIPDQFQDCPSLSVL 511 (1018)
Q Consensus 435 ~L~~L~L~~N~l~~~~-~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L 511 (1018)
+|+.|++++|.+.+.. +..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+. +..|..|..+++|+.|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 88888677875754357553257546127844899754227645500754310110146442256677645557878999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 023620368889721000234516324620138731--------000258845144055652368879788898999549
Q 001752 512 DLSSNYFSGSIPSSIASCEKLVNLNLRNNQLTGDIP--------KAISMMPTLAILDLSNNSLTGGIPENFGASPALEVL 583 (1018)
Q Consensus 512 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 583 (1018)
++++|++++..+..+.++++|+.|++++|++++..+ ..|..+++|+.|+|++|+++...+..|..+++|+.|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEE
T ss_conf 89999877679446345534688858899730000000467741423379988888899997887797773466675223
Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 93088055778997-43344477788888
Q 001752 584 NVSYNRLEGPVPAN-GVLRTINRGDLAGN 611 (1018)
Q Consensus 584 ~l~~N~l~~~~~~~-~~~~~~~~~~~~~N 611 (1018)
++++|++++..+.. ..+..++.+++.+|
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 89999777679768378988888989999
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=492.64 Aligned_cols=545 Identities=20% Similarity=0.189 Sum_probs=350.3
Q ss_pred HHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEC---CCCCEEEEECCCCCCCCC
Q ss_conf 98762200366311101030889999999876067999996897899998312658738---999889997599988764
Q 001752 13 YCYIGCTCFGSAKVVAKTALNDELLALLSIKAGLVDPLNSLHDWKLPSAHCNWTGVWCN---SNGAVEKLDLSHMNLSGC 89 (1018)
Q Consensus 13 ~~~~~~~c~~~~~~~~~~~~~~~~~~ll~~k~~~~d~~~~~~~w~~~~~~c~w~gv~c~---~~~~v~~l~l~~~~l~~~ 89 (1018)
.|+..|.|.....++.|... .+.+++.++. .. +... .-..+..+++.-. .-..++.|+|++|.++++
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~-----~l~~iP~~l~--~~-l~~L--~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 72 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENL-----GLNEIPGTLP--NS-TECL--EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72 (606)
T ss_dssp ---CCCEEEETTTEEECTTS-----CCSSCCTTSC--TT-CCEE--ECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE
T ss_pred CCCCCEECCCCCCEEECCCC-----CCCCCCCCCC--CC-CCEE--ECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEE
T ss_conf 45686012368723777779-----8062867789--86-7589--8158734717966725676652897889835524
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 32223568888888768887678888211078998699864034589886445677888363168987776331123566
Q 001752 90 VSDHFQRLKSLTSLNLCCNGLFSSLPNSLANLTSLKRFDVSQNFLNGSFPAGLGGAAGLTFLNASGNNFSGFLLEDLGNA 169 (1018)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 169 (1018)
.+..|+.+++|++|+|++|.+.+..|..|.++++|++|++++|.+++..|..++.+++|++|++++|.+.+...+.+..+
T Consensus 73 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 152 (606)
T 3t6q_A 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC
T ss_pred CHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 85113684336764488985654586552344215376521267665781012237822389887983411476545687
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCC--EEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6653671248534766661234646445--34201642589887624645530132200133578888243475664321
Q 001752 170 TSLETLDLRGSFFQGSIPVSFKNLQKLK--FLGLSGNNLTGKIPRELGQLSSMETMILAYNEFDGEIPVEFGNLTNLKYL 247 (1018)
Q Consensus 170 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 247 (1018)
++|++|++++|.+.+..|..+..+++|+ .|++++|.+.+..|..+.. .+|+.|+++.|. ..+..+..+.++...
T Consensus 153 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~ 228 (606)
T 3t6q_A 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQ 228 (606)
T ss_dssp TTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHCCCCCHH
T ss_conf 6568777656844554965633221564038966798147548667300-100135567726---677776513356442
Q ss_pred CCCCCCCCC-----CCCCCCCCCC--CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 232422674-----4760014978--544687048967866882111888777665537877644697422566773564
Q 001752 248 DLAVGNLGG-----KIPAELGRLE--LLEIMFLYQNNFQGRLPAEIGNITSLQLLDLSYNMLSHEIPAEITQLKNLQLLN 320 (1018)
Q Consensus 248 ~L~~n~l~~-----~~~~~l~~l~--~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 320 (1018)
.+....+.. ..+..+..+. +++.|++.+|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|+
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~ 307 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEE
T ss_pred HEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEE
T ss_conf 200201102641226866743032075059994457658557777445667888956288267-7782141654688897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 33573535358998888744547731572446899677889988566644640246452012489988522043445778
Q 001752 321 LMCNQLSGHVPAGLGGLTQLEVLELWNNSLSGPLPVDLGKNSPLQWLDLSSNSFSGEIPASLCNGGNLTKLILFNNAFSG 400 (1018)
Q Consensus 321 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 400 (1018)
+++|.+.+..+..+..+++|++|++++|.+.+..+. ..+..+++|+.|++++|.+.+
T Consensus 308 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT-----------------------GCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp CTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS-----------------------STTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCH-----------------------HHHHCCCCCCEEECCCCCCCC
T ss_conf 716876867602330157689888989974443462-----------------------455066758988788996664
Q ss_pred CC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 87--54334566441886247754688765678754346254424556577753-6689875236761477235789700
Q 001752 401 PI--PVSLSTCHSLVRVRMQNNQLSGTIPVGFGRLEKLQRLELANNSLTGGITD-DIASSTSLSFIDISRNHLRSSLPST 477 (1018)
Q Consensus 401 ~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~~~~ 477 (1018)
.. +..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred CCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHH
T ss_conf 56752210567888989898996775788873477457768788886777565212417655888989898557768778
Q ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 02898763023457733478---975457888655320236203688897210002345163246201387310002588
Q 001752 478 ILSIPNLQTFIVSNNNLVGE---IPDQFQDCPSLSVLDLSSNYFSGSIPSSIASCEKLVNLNLRNNQLTGDIPKAISMMP 554 (1018)
Q Consensus 478 ~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 554 (1018)
+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..++
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 73788788898989988854345431240488766887999966706864632656788898989806868966847566
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 451440556523688797888989995499308805577899
Q 001752 555 TLAILDLSNNSLTGGIPENFGASPALEVLNVSYNRLEGPVPA 596 (1018)
Q Consensus 555 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~ 596 (1018)
.| .|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus 525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 51-898768941426876625677878896779986166775
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=491.70 Aligned_cols=527 Identities=20% Similarity=0.204 Sum_probs=459.7
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCC-CCCCCCCCCCCEECCCC
Q ss_conf 99975999887643222356888888876888767888821107899869986403458988-64456778883631689
Q 001752 77 EKLDLSHMNLSGCVSDHFQRLKSLTSLNLCCNGLFSSLPNSLANLTSLKRFDVSQNFLNGSF-PAGLGGAAGLTFLNASG 155 (1018)
Q Consensus 77 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~ 155 (1018)
...|.++++++.++. ..+.+++|+|++|.|....+..|.++++|++|+|++|...+.+ |..|+.+++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEECCCCCCCCCCC----CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 489823799777898----9998688888778678329667766213708867899774441977853787788887989
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCC-CCCCCCCCHHHHHCCCCCCCC
Q ss_conf 8777633112356666536712485347666612--3464644534201642589887-624645530132200133578
Q 001752 156 NNFSGFLLEDLGNATSLETLDLRGSFFQGSIPVS--FKNLQKLKFLGLSGNNLTGKIP-RELGQLSSMETMILAYNEFDG 232 (1018)
Q Consensus 156 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~ 232 (1018)
|.+.+..+..|+++++|++|+|++|.+.+..|.. +.++++|++|+|++|.+++..+ ..|+++++|++|++++|.+.+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCE
T ss_conf 95853197671578665870176788973404676455667999888987864232566557638898989898984776
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCHHHCCC---CCCCEEECCCC-
Q ss_conf 888243475--66432123242267447600149785------4468704896786688211188---87776655378-
Q 001752 233 EIPVEFGNL--TNLKYLDLAVGNLGGKIPAELGRLEL------LEIMFLYQNNFQGRLPAEIGNI---TSLQLLDLSYN- 300 (1018)
Q Consensus 233 ~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~l~~n~~~~~~p~~l~~l---~~L~~L~Ls~n- 300 (1018)
..+..+..+ ++|+.|+++.|.+.+..+..++.+.+ |+.|+++.|.+.+..+..+... ..+..|.++.+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred ECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCC
T ss_conf 67887535567750357897886665545533223772235740079657886865677888764274410011212122
Q ss_pred --------CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf --------7764469742256--677356433573535358998888744547731572446899677889988566644
Q 001752 301 --------MLSHEIPAEITQL--KNLQLLNLMCNQLSGHVPAGLGGLTQLEVLELWNNSLSGPLPVDLGKNSPLQWLDLS 370 (1018)
Q Consensus 301 --------~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 370 (1018)
.+.......+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 34664445668898556525554786189897994551586345258999999897981898796883688899989898
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 64024645201248998852204344577887543345664418862477546887656787543462544245565777
Q 001752 371 SNSFSGEIPASLCNGGNLTKLILFNNAFSGPIPVSLSTCHSLVRVRMQNNQLSGTIPVGFGRLEKLQRLELANNSLTGGI 450 (1018)
Q Consensus 371 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 450 (1018)
+|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+++. ..+++|+.|++++|++....
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCCCCC
T ss_conf 9978851878846899999898989987762866613788899988989977861-----68898232005899723145
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC-----CCCC
Q ss_conf 5366898752367614772357897-0002898763023457733478975-4578886553202362036-----8889
Q 001752 451 TDDIASSTSLSFIDISRNHLRSSLP-STILSIPNLQTFIVSNNNLVGEIPD-QFQDCPSLSVLDLSSNYFS-----GSIP 523 (1018)
Q Consensus 451 ~~~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~ 523 (1018)
. ....++.|++++|++++... ..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+
T Consensus 398 -~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 473 (844)
T 3j0a_A 398 -K---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473 (844)
T ss_dssp -C---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred -C---CCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf -5---455431221456753457556665127766666677871255554333566873100247777364410135535
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 72100023451632462013873100025884514405565236887978889899954993088055778997433444
Q 001752 524 SSIASCEKLVNLNLRNNQLTGDIPKAISMMPTLAILDLSNNSLTGGIPENFGASPALEVLNVSYNRLEGPVPANGVLRTI 603 (1018)
Q Consensus 524 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 603 (1018)
..|.++++|+.|+|++|.+++.++..|..+++|+.|+|++|+|++..+..+. ++|+.|++++|++++..|.. +..+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L 549 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL 549 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCCC
T ss_conf 5544755365777889856553955704501221569999978745710110--04558889888478889668--3776
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 77788888678888888
Q 001752 604 NRGDLAGNAGLCGGVLH 620 (1018)
Q Consensus 604 ~~~~~~~N~~~C~~~l~ 620 (1018)
..+++.+|||.|+|++.
T Consensus 550 ~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 550 SVLDITHNKFICECELS 566 (844)
T ss_dssp CEEEEEEECCCCSSSCC
T ss_pred CEEEECCCCCCCCCCCH
T ss_conf 88993199702536618
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=483.71 Aligned_cols=535 Identities=20% Similarity=0.287 Sum_probs=294.9
Q ss_pred CCHHHHHHHHHHHHCCCCC-CC-------CCCCCCCCCCCCEE---EEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 3088999999987606799-99-------96897899998312---6587389998899975999887643222356888
Q 001752 31 ALNDELLALLSIKAGLVDP-LN-------SLHDWKLPSAHCNW---TGVWCNSNGAVEKLDLSHMNLSGCVSDHFQRLKS 99 (1018)
Q Consensus 31 ~~~~~~~~ll~~k~~~~d~-~~-------~~~~w~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~l~~~~~~~~~~l~~ 99 (1018)
....|+.||.+|++++.++ +. ..++|..+++||.| .||+|+..|+|+.|+|++++++|.++++|+++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHCCCC
T ss_conf 67788999999999758997454776776578877799800014779848767897889984276657728857856845
Q ss_pred CCEEECCCCCC------CC------CCCHHHHCCCCCCEEEEEECCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCCCCC
Q ss_conf 88887688876------78------88821107899869986403458988644567-7888363168987776331123
Q 001752 100 LTSLNLCCNGL------FS------SLPNSLANLTSLKRFDVSQNFLNGSFPAGLGG-AAGLTFLNASGNNFSGFLLEDL 166 (1018)
Q Consensus 100 L~~L~L~~n~i------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~~~~l 166 (1018)
|++|+|++|.+ .+ .+|... +.+|+ +++++|.+.+.+|..+.. +..+..+++....+..
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------ 177 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------ 177 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC------
T ss_conf 1189876885123774334532356733888--88887-65777554117066677887777642755465410------
Q ss_pred CCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-----------------CCCCCC--CCCCHHHHHC
Q ss_conf 566665367124--8534766661234646445342016425898-----------------876246--4553013220
Q 001752 167 GNATSLETLDLR--GSFFQGSIPVSFKNLQKLKFLGLSGNNLTGK-----------------IPRELG--QLSSMETMIL 225 (1018)
Q Consensus 167 ~~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L 225 (1018)
.....++.+.+. .|.+++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|++
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred CCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEE
T ss_conf 13344213001013677750-78777256478789886882366423221222221001024863220044687888980
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCC------CCCCEEECCCCCCCCCCCH--HHCCCCCCCEE
Q ss_conf 0133578888243475664321232422-674-476001497------8544687048967866882--11188877766
Q 001752 226 AYNEFDGEIPVEFGNLTNLKYLDLAVGN-LGG-KIPAELGRL------ELLEIMFLYQNNFQGRLPA--EIGNITSLQLL 295 (1018)
Q Consensus 226 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~p~--~l~~l~~L~~L 295 (1018)
++|.+.+.+|..++++++|++|++++|. +.+ .+|..++.+ ++|+.|++++|.+. .+|. .+.++++|+.|
T Consensus 257 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGML 335 (636)
T ss_dssp ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEE
T ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEE
T ss_conf 48857762838883499978897847988766533578875430465788888989799377-66765554257888989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCCCCCCCCCCC--CCCEEECCCC
Q ss_conf 55378776446974225667735643357353535899888874-45477315724468996778899--8856664464
Q 001752 296 DLSYNMLSHEIPAEITQLKNLQLLNLMCNQLSGHVPAGLGGLTQ-LEVLELWNNSLSGPLPVDLGKNS--PLQWLDLSSN 372 (1018)
Q Consensus 296 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~Ls~n 372 (1018)
++++|.+.+.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+.... +|+.|++++|
T Consensus 336 ~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred ECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCC
T ss_conf 690880705166-6478898898989899403-033756510236868985298275-4466553334576688977488
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 02464520124899885220434457788754334566441886247754688765678754346254424556577753
Q 001752 373 SFSGEIPASLCNGGNLTKLILFNNAFSGPIPVSLSTCHSLVRVRMQNNQLSGTIPVGFGRLEKLQRLELANNSLTGGITD 452 (1018)
Q Consensus 373 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 452 (1018)
.+.+..|..+.... .....+.+|+.|++++|+++...+..+..+++|++|++++|.+......
T Consensus 413 ~l~~~~p~~l~~~~-----------------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 413 EIGSVDGKNFDPLD-----------------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CTTTTTTCSSCTTC-----------------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred CCCCCCHHHHCCCC-----------------CCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 57886524420022-----------------0112589888897727966867878871589889898979978873978
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 668987523676147723578970002898763023457733478975457--888655320236203688897210002
Q 001752 453 DIASSTSLSFIDISRNHLRSSLPSTILSIPNLQTFIVSNNNLVGEIPDQFQ--DCPSLSVLDLSSNYFSGSIPSSIASCE 530 (1018)
Q Consensus 453 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 530 (1018)
.+.... ..+.++++|+.|++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..++
T Consensus 476 ~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~ 536 (636)
T 4eco_A 476 SLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536 (636)
T ss_dssp SSEETT-----------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS
T ss_pred HHCCCC-----------------CCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCC
T ss_conf 840440-----------------01221477338989699388-16854534458876989898998877-682353088
Q ss_pred CCCEEEC------CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC---CCC
Q ss_conf 3451632------4620138731000258845144055652368879788898999549930880557789974---334
Q 001752 531 KLVNLNL------RNNQLTGDIPKAISMMPTLAILDLSNNSLTGGIPENFGASPALEVLNVSYNRLEGPVPANG---VLR 601 (1018)
Q Consensus 531 ~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~---~~~ 601 (1018)
+|+.|++ ++|++.+.+|..+..+++|+.|+|++|+++ .+|..+. ++|+.|++++|++.+...... ...
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 613 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEA 613 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHT
T ss_pred CCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHH--CCCCEEECCCCCCCCCCHHHCCHHHHC
T ss_conf 8787889888665667312127377856998788989899477-0597683--867899876998763367862011226
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 44777888886788888
Q 001752 602 TINRGDLAGNAGLCGGV 618 (1018)
Q Consensus 602 ~~~~~~~~~N~~~C~~~ 618 (1018)
....+.+..+...|||+
T Consensus 614 ~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 614 GMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp TCCEEECCTTSEEESCG
T ss_pred CCCEEECCCCCCCCCCC
T ss_conf 61003437754347986
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=483.69 Aligned_cols=515 Identities=20% Similarity=0.203 Sum_probs=272.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEECC
Q ss_conf 98899975999887643222356888888876888767888821107899869986403458988644567788836316
Q 001752 74 GAVEKLDLSHMNLSGCVSDHFQRLKSLTSLNLCCNGLFSSLPNSLANLTSLKRFDVSQNFLNGSFPAGLGGAAGLTFLNA 153 (1018)
Q Consensus 74 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 153 (1018)
.+++.|+|+++.++++.+..|.++++|++|++++|.+.++.|.+|.++++|++|+|++|.+++..|..++.+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHH----HHHCCCC
Q ss_conf 8987776331123566665367124853476-6661234646445342016425898876246455301----3220013
Q 001752 154 SGNNFSGFLLEDLGNATSLETLDLRGSFFQG-SIPVSFKNLQKLKFLGLSGNNLTGKIPRELGQLSSME----TMILAYN 228 (1018)
Q Consensus 154 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n 228 (1018)
++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+.+|+ .|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCC
T ss_conf 37755544511348988779896878852325306867326777788766885310573341212034200243004689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCC------CCHHHCCCC--CCCEEEC-C
Q ss_conf 357888824347566432123242267-44760014978544687048967866------882111888--7776655-3
Q 001752 229 EFDGEIPVEFGNLTNLKYLDLAVGNLG-GKIPAELGRLELLEIMFLYQNNFQGR------LPAEIGNIT--SLQLLDL-S 298 (1018)
Q Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~------~p~~l~~l~--~L~~L~L-s 298 (1018)
.+++..+..+... +|+.|++++|.+. +..+..+..++.++.+.+..+.+.+. .+..+..+. .++.+++ .
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCC
T ss_conf 7532571105676-043352467856166778886026656523141111036774102681776666543474501236
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 78776446974225667735643357353535899888874454773157244689967788998856664464024645
Q 001752 299 YNMLSHEIPAEITQLKNLQLLNLMCNQLSGHVPAGLGGLTQLEVLELWNNSLSGPLPVDLGKNSPLQWLDLSSNSFSGEI 378 (1018)
Q Consensus 299 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 378 (1018)
.|.+.+..|. +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .+| .+ .+++|+.|++++|...+..
T Consensus 271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 271 TNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp CTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred CCCCCCCCCC-CCCCCCCCEEEECCCCCHH-HH-HCCCCCCCCEEECCCCCCC-CCC-CC-CCCCCCEEECCCCCCCCCH
T ss_conf 6555543222-3548878987714766044-35-4334011778976466676-546-67-8875564454478685310
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 20124899885220434457788754334566441886247754688765678754346254424556577753668987
Q 001752 379 PASLCNGGNLTKLILFNNAFSGPIPVSLSTCHSLVRVRMQNNQLSGTIPVGFGRLEKLQRLELANNSLTGGITDDIASST 458 (1018)
Q Consensus 379 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 458 (1018)
.+..+++|+.|++++|.+.+.. ..+..+..+++|++|++++|.+.+. +..+..++
T Consensus 345 --~~~~l~~L~~L~ls~n~l~~~~----------------------~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~ 399 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNALSFSG----------------------CCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLE 399 (606)
T ss_dssp --CCCCCTTCCEEECCSSCEEEEE----------------------ECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCT
T ss_pred --HHCCCCCCCEEECCCCCCCCCC----------------------CHHHHHCCCCCCCEEECCCCCCCCC-HHHCCCCC
T ss_conf --0024898887977587368775----------------------2012214677554867889953000-55406888
Q ss_pred CCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEE
Q ss_conf 52367614772357897-000289876302345773347897545788865532023620368-8897210002345163
Q 001752 459 SLSFIDISRNHLRSSLP-STILSIPNLQTFIVSNNNLVGEIPDQFQDCPSLSVLDLSSNYFSG-SIPSSIASCEKLVNLN 536 (1018)
Q Consensus 459 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~ 536 (1018)
+|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+..+++|+.|+
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEE
T ss_conf 88965898870587537645646213788989689787433555347787898989898379854677604578899898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 24620138731000258845144055652368879788898999549930880557789974334-44777888886788
Q 001752 537 LRNNQLTGDIPKAISMMPTLAILDLSNNSLTGGIPENFGASPALEVLNVSYNRLEGPVPANGVLR-TINRGDLAGNAGLC 615 (1018)
Q Consensus 537 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~-~~~~~~~~~N~~~C 615 (1018)
+++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|+++..++....+. .++.+++.+|||.|
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCC
T ss_conf 98885776486561546468989898995787487770688768988898983766687675210217488762898664
Q ss_pred CCCCC
Q ss_conf 88888
Q 001752 616 GGVLH 620 (1018)
Q Consensus 616 ~~~l~ 620 (1018)
+|++.
T Consensus 560 ~c~~~ 564 (606)
T 3vq2_A 560 ICEHQ 564 (606)
T ss_dssp SSTTH
T ss_pred CCCCH
T ss_conf 77648
Done!