Query 001754
Match_columns 1017
No_of_seqs 822 out of 4256
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0520 Uncharacterized conser 100.0 9E-135 2E-139 1206.6 44.8 905 6-1004 16-961 (975)
2 PF03859 CG-1: CG-1 domain; I 100.0 4E-62 8.7E-67 454.9 9.7 117 19-136 2-118 (118)
3 KOG4412 26S proteasome regulat 99.9 1.6E-21 3.4E-26 194.5 9.8 127 638-776 30-163 (226)
4 KOG4412 26S proteasome regulat 99.8 5.8E-21 1.3E-25 190.5 11.1 154 610-776 37-196 (226)
5 PHA02791 ankyrin-like protein; 99.8 3.3E-18 7.3E-23 189.6 16.6 155 612-780 62-223 (284)
6 KOG0509 Ankyrin repeat and DHH 99.8 2.8E-18 6.1E-23 199.1 14.1 168 615-800 48-221 (600)
7 PHA02859 ankyrin repeat protei 99.7 1.6E-17 3.6E-22 176.6 15.5 145 610-766 50-202 (209)
8 PHA02946 ankyin-like protein; 99.7 4.2E-17 9.1E-22 192.2 18.4 153 612-776 38-199 (446)
9 PHA02878 ankyrin repeat protei 99.7 5.3E-17 1.1E-21 193.0 17.2 143 626-779 148-295 (477)
10 PHA02878 ankyrin repeat protei 99.7 8.1E-17 1.8E-21 191.4 18.4 152 612-776 38-259 (477)
11 PHA02791 ankyrin-like protein; 99.7 6.9E-17 1.5E-21 179.2 16.5 151 610-776 29-184 (284)
12 PHA02798 ankyrin-like protein; 99.7 9.4E-17 2E-21 191.6 17.4 161 610-776 70-282 (489)
13 KOG0509 Ankyrin repeat and DHH 99.7 1.9E-17 4.1E-22 192.3 10.4 141 613-765 80-221 (600)
14 PHA02743 Viral ankyrin protein 99.7 7.9E-17 1.7E-21 165.2 13.8 125 614-744 23-155 (166)
15 PHA02716 CPXV016; CPX019; EVM0 99.7 9.2E-17 2E-21 196.6 16.6 159 610-780 176-395 (764)
16 PHA02874 ankyrin repeat protei 99.7 1.5E-16 3.3E-21 186.8 17.7 152 610-776 123-279 (434)
17 PHA02874 ankyrin repeat protei 99.7 2E-16 4.3E-21 185.8 18.0 135 626-772 105-242 (434)
18 PLN03192 Voltage-dependent pot 99.7 1.7E-16 3.7E-21 200.3 17.7 150 612-776 526-679 (823)
19 PHA02859 ankyrin repeat protei 99.7 4.4E-16 9.5E-21 165.6 17.6 149 612-776 22-183 (209)
20 PHA03100 ankyrin repeat protei 99.7 2.3E-16 5.1E-21 187.0 16.6 155 610-776 140-307 (480)
21 PHA02875 ankyrin repeat protei 99.7 3.1E-16 6.8E-21 182.7 16.7 153 611-776 68-226 (413)
22 PHA02875 ankyrin repeat protei 99.7 6.2E-16 1.3E-20 180.2 18.9 154 610-776 34-192 (413)
23 KOG0508 Ankyrin repeat protein 99.7 8E-17 1.7E-21 179.9 9.9 138 625-775 97-234 (615)
24 PHA03095 ankyrin-like protein; 99.7 5.2E-16 1.1E-20 183.5 16.6 159 609-779 45-217 (471)
25 PHA02989 ankyrin repeat protei 99.7 9.8E-16 2.1E-20 183.1 18.2 159 612-776 70-280 (494)
26 PHA03095 ankyrin-like protein; 99.7 8.4E-16 1.8E-20 181.7 17.5 156 609-776 81-248 (471)
27 PHA03100 ankyrin repeat protei 99.7 1.2E-15 2.5E-20 181.0 18.1 116 618-740 80-199 (480)
28 PHA02716 CPXV016; CPX019; EVM0 99.7 5.6E-16 1.2E-20 189.7 15.7 142 623-776 153-343 (764)
29 PHA02798 ankyrin-like protein; 99.7 8.9E-16 1.9E-20 183.2 16.7 144 622-776 48-210 (489)
30 PHA02989 ankyrin repeat protei 99.7 6.6E-16 1.4E-20 184.5 15.5 159 611-775 108-312 (494)
31 KOG0512 Fetal globin-inducing 99.6 1.3E-15 2.8E-20 151.4 13.2 142 612-766 65-208 (228)
32 PHA02876 ankyrin repeat protei 99.6 2.3E-15 5.1E-20 186.6 18.8 155 610-776 272-433 (682)
33 KOG0195 Integrin-linked kinase 99.6 3.9E-16 8.4E-21 165.1 8.9 129 635-775 24-152 (448)
34 PHA02876 ankyrin repeat protei 99.6 3.1E-15 6.7E-20 185.6 18.5 155 610-776 340-498 (682)
35 PHA02946 ankyin-like protein; 99.6 2E-15 4.3E-20 178.1 15.7 153 609-776 70-233 (446)
36 PHA02743 Viral ankyrin protein 99.6 1.5E-15 3.3E-20 155.8 12.8 132 634-776 9-152 (166)
37 PHA02741 hypothetical protein; 99.6 1.2E-15 2.6E-20 156.8 11.8 114 639-763 15-139 (169)
38 PHA02795 ankyrin-like protein; 99.6 3.9E-15 8.4E-20 172.1 16.3 154 609-776 114-286 (437)
39 PHA02741 hypothetical protein; 99.6 2.5E-15 5.5E-20 154.4 12.8 126 610-742 20-157 (169)
40 PHA02730 ankyrin-like protein; 99.6 7.6E-15 1.7E-19 176.9 16.7 158 607-776 339-522 (672)
41 KOG0502 Integral membrane anky 99.6 2E-15 4.4E-20 155.0 9.3 129 634-774 149-280 (296)
42 PHA02884 ankyrin repeat protei 99.6 6.7E-15 1.5E-19 163.9 14.2 124 608-738 30-158 (300)
43 PHA02736 Viral ankyrin protein 99.6 2.2E-15 4.8E-20 152.0 8.9 127 610-743 16-152 (154)
44 KOG0514 Ankyrin repeat protein 99.6 1.2E-15 2.6E-20 166.4 7.2 115 638-763 261-414 (452)
45 KOG4177 Ankyrin [Cell wall/mem 99.6 6.9E-15 1.5E-19 183.4 12.8 149 609-765 505-653 (1143)
46 PHA02917 ankyrin-like protein; 99.6 2.6E-14 5.6E-19 175.5 16.6 48 610-657 31-80 (661)
47 PHA02884 ankyrin repeat protei 99.6 1.7E-14 3.8E-19 160.6 13.6 115 640-765 27-146 (300)
48 PHA02917 ankyrin-like protein; 99.6 2.8E-14 6.1E-19 175.2 16.7 159 609-776 66-254 (661)
49 PF12796 Ank_2: Ankyrin repeat 99.6 1.7E-14 3.7E-19 131.6 11.1 85 649-743 1-85 (89)
50 PHA02795 ankyrin-like protein; 99.5 5.6E-14 1.2E-18 162.5 16.2 147 622-776 87-245 (437)
51 KOG0510 Ankyrin repeat protein 99.5 1.1E-14 2.3E-19 172.1 10.2 144 608-761 270-415 (929)
52 KOG0508 Ankyrin repeat protein 99.5 1.7E-14 3.6E-19 161.6 11.0 137 628-776 58-207 (615)
53 PHA02736 Viral ankyrin protein 99.5 1.8E-14 4E-19 145.3 10.3 126 638-776 10-150 (154)
54 cd01175 IPT_COE IPT domain of 99.5 2.3E-14 5.1E-19 126.1 9.0 80 440-526 2-83 (85)
55 KOG0510 Ankyrin repeat protein 99.5 4E-14 8.8E-19 167.3 12.8 131 638-776 266-401 (929)
56 KOG0505 Myosin phosphatase, re 99.5 6.1E-14 1.3E-18 160.3 12.0 153 617-776 46-255 (527)
57 KOG0505 Myosin phosphatase, re 99.5 4.2E-14 9.1E-19 161.7 8.9 145 611-768 73-276 (527)
58 PHA02730 ankyrin-like protein; 99.5 2.4E-13 5.3E-18 164.0 15.5 144 625-776 20-179 (672)
59 KOG4177 Ankyrin [Cell wall/mem 99.5 2.5E-13 5.5E-18 169.6 13.2 152 612-776 475-630 (1143)
60 PLN03192 Voltage-dependent pot 99.4 8.9E-13 1.9E-17 166.8 17.3 130 641-780 521-651 (823)
61 PF12796 Ank_2: Ankyrin repeat 99.4 7.8E-13 1.7E-17 120.7 10.4 89 615-708 1-89 (89)
62 KOG0195 Integrin-linked kinase 99.4 6.1E-13 1.3E-17 141.2 8.9 127 610-743 33-159 (448)
63 KOG0514 Ankyrin repeat protein 99.4 7.6E-13 1.6E-17 144.8 9.6 106 627-739 322-429 (452)
64 KOG0512 Fetal globin-inducing 99.4 9.4E-13 2E-17 131.3 9.2 106 647-764 65-171 (228)
65 KOG0502 Integral membrane anky 99.4 2.4E-13 5.3E-18 139.8 5.0 108 626-740 174-281 (296)
66 PHA02792 ankyrin-like protein; 99.4 4.8E-12 1E-16 151.5 16.4 152 610-775 305-476 (631)
67 cd00204 ANK ankyrin repeats; 99.4 6.5E-12 1.4E-16 118.7 13.4 114 641-766 3-116 (126)
68 TIGR00870 trp transient-recept 99.4 5.7E-12 1.2E-16 158.0 15.7 147 609-766 50-218 (743)
69 KOG4214 Myotrophin and similar 99.3 3.6E-12 7.8E-17 115.2 9.5 112 648-772 5-116 (117)
70 TIGR00870 trp transient-recept 99.3 3.1E-12 6.8E-17 160.4 11.7 160 608-774 79-279 (743)
71 KOG0507 CASK-interacting adapt 99.3 2E-12 4.3E-17 152.3 9.0 159 612-776 50-245 (854)
72 COG0666 Arp FOG: Ankyrin repea 99.3 1.3E-11 2.7E-16 128.5 12.5 106 629-740 90-203 (235)
73 PHA02792 ankyrin-like protein; 99.3 8.2E-12 1.8E-16 149.6 11.3 110 626-741 353-477 (631)
74 cd00204 ANK ankyrin repeats; 99.3 4.1E-11 8.8E-16 113.3 13.4 119 612-737 8-126 (126)
75 KOG0507 CASK-interacting adapt 99.3 4.4E-12 9.5E-17 149.4 8.1 126 637-774 41-170 (854)
76 KOG0515 p53-interacting protei 99.3 5.9E-12 1.3E-16 142.4 8.4 109 627-740 565-675 (752)
77 KOG1710 MYND Zn-finger and ank 99.3 1.9E-11 4.1E-16 130.2 10.3 97 636-738 36-133 (396)
78 COG0666 Arp FOG: Ankyrin repea 99.2 1.1E-10 2.4E-15 121.3 14.3 120 638-769 66-193 (235)
79 PF13857 Ank_5: Ankyrin repeat 99.2 1E-11 2.3E-16 104.3 4.3 50 636-685 7-56 (56)
80 PTZ00322 6-phosphofructo-2-kin 99.2 5E-11 1.1E-15 147.3 11.2 86 648-739 85-170 (664)
81 PF13637 Ank_4: Ankyrin repeat 99.2 3.1E-11 6.7E-16 100.4 6.1 54 645-698 1-54 (54)
82 KOG4214 Myotrophin and similar 99.2 4.2E-11 9E-16 108.4 7.2 86 632-724 22-107 (117)
83 PF13857 Ank_5: Ankyrin repeat 99.2 1.7E-11 3.7E-16 103.0 4.5 55 664-724 1-56 (56)
84 KOG3676 Ca2+-permeable cation 99.2 1.6E-10 3.4E-15 138.3 13.2 156 609-774 141-330 (782)
85 KOG0520 Uncharacterized conser 99.2 7.6E-10 1.6E-14 135.6 18.4 268 454-771 402-695 (975)
86 PF13637 Ank_4: Ankyrin repeat 99.1 1.8E-10 3.9E-15 95.8 6.4 54 678-737 1-54 (54)
87 PF01833 TIG: IPT/TIG domain; 99.1 5.3E-10 1.1E-14 100.8 9.6 83 440-526 2-85 (85)
88 PTZ00322 6-phosphofructo-2-kin 99.1 4.6E-10 9.9E-15 138.8 11.1 104 615-725 86-196 (664)
89 KOG0515 p53-interacting protei 99.0 4.3E-10 9.3E-15 127.7 8.4 105 649-764 554-658 (752)
90 KOG1710 MYND Zn-finger and ank 99.0 7.4E-10 1.6E-14 118.2 9.6 108 646-764 13-120 (396)
91 KOG3676 Ca2+-permeable cation 99.0 9.7E-10 2.1E-14 131.7 11.0 123 610-739 183-330 (782)
92 cd01179 IPT_plexin_repeat2 Sec 98.9 8.1E-09 1.8E-13 94.4 10.5 83 440-528 2-85 (85)
93 KOG4369 RTK signaling protein 98.9 1.8E-09 3.8E-14 130.4 6.8 160 610-776 756-916 (2131)
94 cd00102 IPT Immunoglobulin-lik 98.9 1.1E-08 2.4E-13 93.3 10.3 83 440-527 2-88 (89)
95 KOG0818 GTPase-activating prot 98.7 6.4E-08 1.4E-12 109.8 9.7 95 638-738 120-221 (669)
96 KOG4369 RTK signaling protein 98.6 3.8E-08 8.2E-13 119.2 5.6 144 626-776 871-1018(2131)
97 cd00603 IPT_PCSR IPT domain of 98.6 2.9E-07 6.3E-12 84.7 10.3 84 440-527 2-89 (90)
98 KOG0783 Uncharacterized conser 98.5 3E-08 6.5E-13 117.7 2.8 83 638-726 45-128 (1267)
99 smart00429 IPT ig-like, plexin 98.5 3.2E-07 7E-12 84.3 8.7 84 439-527 2-90 (90)
100 cd01180 IPT_plexin_repeat1 Fir 98.5 4.6E-07 1E-11 84.5 9.6 87 440-528 2-94 (94)
101 KOG0705 GTPase-activating prot 98.5 6.2E-07 1.3E-11 103.6 10.6 96 608-705 622-721 (749)
102 KOG0506 Glutaminase (contains 98.4 1.8E-07 4E-12 105.8 5.5 94 641-740 502-596 (622)
103 KOG0782 Predicted diacylglycer 98.4 1.1E-06 2.3E-11 100.9 8.8 123 610-740 866-990 (1004)
104 cd01181 IPT_plexin_repeat3 Thi 98.3 1.7E-06 3.7E-11 81.5 8.6 72 440-514 2-81 (99)
105 PF13606 Ank_3: Ankyrin repeat 98.3 6.4E-07 1.4E-11 65.7 3.8 29 677-705 1-29 (30)
106 KOG0783 Uncharacterized conser 98.3 3.2E-07 6.9E-12 109.2 3.4 83 671-764 45-127 (1267)
107 KOG0160 Myosin class V heavy c 98.3 1.1E-05 2.3E-10 100.0 15.5 124 788-916 592-735 (862)
108 KOG0160 Myosin class V heavy c 98.2 3.4E-05 7.4E-10 95.6 19.0 87 799-894 673-759 (862)
109 PF00023 Ank: Ankyrin repeat H 98.2 1.5E-06 3.2E-11 65.0 4.2 32 677-708 1-32 (33)
110 cd02849 CGTase_C_term Cgtase ( 98.2 7.8E-06 1.7E-10 74.2 9.5 79 439-526 3-81 (81)
111 PF13606 Ank_3: Ankyrin repeat 98.1 2.4E-06 5.2E-11 62.7 3.7 30 644-673 1-30 (30)
112 PF00023 Ank: Ankyrin repeat H 98.1 3E-06 6.5E-11 63.3 4.2 33 644-676 1-33 (33)
113 KOG0818 GTPase-activating prot 98.1 7.7E-06 1.7E-10 93.3 9.3 89 610-699 132-221 (669)
114 KOG0164 Myosin class I heavy c 98.1 3.2E-05 6.9E-10 91.7 14.5 117 795-923 618-758 (1001)
115 KOG0705 GTPase-activating prot 98.1 6.5E-06 1.4E-10 95.4 8.0 90 649-744 628-721 (749)
116 KOG0522 Ankyrin repeat protein 98.0 8.3E-06 1.8E-10 94.4 7.6 67 634-700 44-110 (560)
117 KOG0522 Ankyrin repeat protein 98.0 8E-06 1.7E-10 94.5 7.3 88 647-740 22-111 (560)
118 COG5022 Myosin heavy chain [Cy 98.0 0.00016 3.5E-09 92.3 17.9 101 791-894 658-786 (1463)
119 cd00604 IPT_CGTD IPT domain (d 97.9 8.2E-05 1.8E-09 67.6 9.6 79 440-527 2-80 (81)
120 KOG2384 Major histocompatibili 97.8 4.3E-05 9.3E-10 78.4 7.8 65 669-739 3-68 (223)
121 KOG0521 Putative GTPase activa 97.8 1.4E-05 3E-10 99.6 4.9 98 635-738 644-743 (785)
122 KOG0506 Glutaminase (contains 97.8 2E-05 4.3E-10 89.8 4.3 84 618-702 513-597 (622)
123 KOG3609 Receptor-activated Ca2 97.7 8.8E-05 1.9E-09 90.5 9.5 124 615-745 29-159 (822)
124 PTZ00014 myosin-A; Provisional 97.7 9.6E-05 2.1E-09 93.0 10.1 102 789-894 689-818 (821)
125 KOG0782 Predicted diacylglycer 97.6 7.2E-05 1.6E-09 86.3 5.9 103 650-764 871-975 (1004)
126 KOG0511 Ankyrin repeat protein 97.5 0.00015 3.3E-09 80.8 6.8 85 646-739 37-121 (516)
127 PF00612 IQ: IQ calmodulin-bin 97.5 0.00013 2.7E-09 49.1 3.5 19 877-895 2-20 (21)
128 KOG2384 Major histocompatibili 97.5 0.00021 4.5E-09 73.5 6.4 70 635-704 2-72 (223)
129 PF00612 IQ: IQ calmodulin-bin 97.3 0.00031 6.7E-09 47.3 3.5 21 853-873 1-21 (21)
130 KOG0511 Ankyrin repeat protein 97.1 0.0006 1.3E-08 76.2 6.0 58 679-742 37-94 (516)
131 KOG0521 Putative GTPase activa 97.0 0.00048 1E-08 86.2 4.3 85 668-764 644-730 (785)
132 COG5022 Myosin heavy chain [Cy 96.8 0.052 1.1E-06 70.4 20.0 48 851-898 840-887 (1463)
133 KOG0161 Myosin class II heavy 96.4 0.11 2.3E-06 70.6 19.6 107 785-894 684-817 (1930)
134 smart00015 IQ Short calmodulin 96.1 0.006 1.3E-07 43.2 3.2 20 853-872 3-22 (26)
135 cd00602 IPT_TF IPT domain of e 96.1 0.024 5.2E-07 53.7 8.0 82 440-527 2-100 (101)
136 smart00015 IQ Short calmodulin 96.1 0.0063 1.4E-07 43.1 3.2 22 875-896 2-23 (26)
137 KOG0162 Myosin class I heavy c 96.1 0.027 5.9E-07 67.7 10.1 95 794-898 617-738 (1106)
138 KOG3610 Plexins (functional se 95.9 0.019 4.1E-07 73.1 8.5 95 433-532 137-234 (1025)
139 smart00248 ANK ankyrin repeats 95.6 0.017 3.7E-07 39.2 3.9 27 678-704 2-28 (30)
140 KOG2505 Ankyrin repeat protein 95.5 0.027 5.8E-07 65.6 6.6 61 659-725 405-471 (591)
141 cd01176 IPT_RBP-Jkappa IPT dom 95.2 0.077 1.7E-06 48.6 7.4 66 455-527 20-96 (97)
142 smart00248 ANK ankyrin repeats 95.0 0.035 7.6E-07 37.5 3.7 29 644-672 1-29 (30)
143 cd01178 IPT_NFAT IPT domain of 95.0 0.078 1.7E-06 50.0 7.0 81 439-527 2-100 (101)
144 KOG2505 Ankyrin repeat protein 94.9 0.034 7.4E-07 64.7 5.6 74 691-770 404-477 (591)
145 KOG3609 Receptor-activated Ca2 94.4 0.092 2E-06 65.0 7.7 117 647-776 27-155 (822)
146 cd01177 IPT_NFkappaB IPT domai 93.8 0.25 5.4E-06 46.7 7.5 82 440-527 2-101 (102)
147 PF08549 SWI-SNF_Ssr4: Fungal 92.5 0.28 6E-06 59.8 7.4 104 27-137 30-155 (669)
148 PTZ00014 myosin-A; Provisional 91.6 0.39 8.5E-06 61.3 7.7 40 877-916 778-817 (821)
149 KOG0163 Myosin class VI heavy 91.2 6.1 0.00013 48.7 16.3 21 878-898 815-835 (1259)
150 KOG0161 Myosin class II heavy 89.4 7.6 0.00016 53.7 16.8 66 828-893 771-842 (1930)
151 KOG0164 Myosin class I heavy c 89.1 1.5 3.3E-05 53.5 9.1 82 800-898 697-789 (1001)
152 KOG0163 Myosin class VI heavy 88.9 6.4 0.00014 48.6 13.9 33 851-883 811-843 (1259)
153 KOG2128 Ras GTPase-activating 86.7 5.7 0.00012 52.3 12.6 45 854-898 566-614 (1401)
154 KOG3836 HLH transcription fact 86.4 0.84 1.8E-05 55.1 4.9 144 438-681 322-465 (605)
155 KOG2128 Ras GTPase-activating 83.6 14 0.00031 48.9 14.1 50 849-898 588-644 (1401)
156 PF12325 TMF_TATA_bd: TATA ele 83.2 16 0.00035 35.9 11.3 73 942-1014 40-116 (120)
157 KOG1853 LIS1-interacting prote 82.6 8.2 0.00018 41.9 9.7 88 911-1015 28-115 (333)
158 PF15290 Syntaphilin: Golgi-lo 82.3 3.1 6.7E-05 45.8 6.5 68 949-1016 71-153 (305)
159 KOG1029 Endocytic adaptor prot 79.7 40 0.00087 42.2 15.0 71 942-1012 433-504 (1118)
160 KOG4427 E3 ubiquitin protein l 78.8 3.2 7E-05 51.1 5.7 27 848-874 25-51 (1096)
161 PRK15422 septal ring assembly 77.5 13 0.00028 33.6 7.7 67 948-1014 6-73 (79)
162 PF09726 Macoilin: Transmembra 76.6 32 0.0007 43.6 13.9 31 985-1015 627-657 (697)
163 PF06128 Shigella_OspC: Shigel 75.5 7.4 0.00016 42.0 6.7 121 609-742 151-279 (284)
164 COG3074 Uncharacterized protei 75.4 17 0.00036 32.0 7.5 67 948-1014 6-73 (79)
165 PF06005 DUF904: Protein of un 74.9 16 0.00035 32.7 7.7 61 948-1014 6-66 (72)
166 KOG0942 E3 ubiquitin protein l 72.5 6.5 0.00014 49.7 6.2 25 851-875 27-51 (1001)
167 KOG1029 Endocytic adaptor prot 72.1 96 0.0021 39.1 15.5 30 985-1014 470-499 (1118)
168 PF07139 DUF1387: Protein of u 69.0 30 0.00065 39.1 9.9 63 954-1016 186-258 (302)
169 PF02183 HALZ: Homeobox associ 68.8 5.5 0.00012 32.3 3.1 40 972-1011 4-43 (45)
170 KOG3610 Plexins (functional se 68.8 5.4 0.00012 51.7 4.6 75 436-511 47-125 (1025)
171 KOG0250 DNA repair protein RAD 67.3 63 0.0014 42.3 13.3 24 868-891 279-302 (1074)
172 KOG0933 Structural maintenance 66.8 1.2E+02 0.0026 39.5 15.2 66 949-1014 790-856 (1174)
173 PF10498 IFT57: Intra-flagella 66.4 1.9E+02 0.0042 33.8 16.2 68 939-1012 273-346 (359)
174 COG4026 Uncharacterized protei 64.7 47 0.001 35.7 9.7 43 969-1011 131-173 (290)
175 KOG4005 Transcription factor X 62.9 33 0.00072 37.1 8.3 52 961-1012 91-143 (292)
176 PF08317 Spc7: Spc7 kinetochor 62.2 1.8E+02 0.004 33.4 15.1 45 969-1013 212-256 (325)
177 smart00787 Spc7 Spc7 kinetocho 62.0 90 0.0019 35.8 12.3 40 972-1011 210-249 (312)
178 COG4026 Uncharacterized protei 60.3 84 0.0018 33.9 10.6 19 853-871 72-90 (290)
179 KOG0250 DNA repair protein RAD 59.7 2.1E+02 0.0045 37.8 15.8 59 955-1015 406-464 (1074)
180 KOG3684 Ca2+-activated K+ chan 59.6 73 0.0016 38.0 11.0 46 850-906 361-406 (489)
181 PF10168 Nup88: Nuclear pore c 59.6 1.2E+02 0.0026 38.8 14.0 24 848-871 552-575 (717)
182 PF08763 Ca_chan_IQ: Voltage g 59.3 11 0.00023 29.0 2.8 18 854-871 10-27 (35)
183 KOG0971 Microtubule-associated 58.7 3.2E+02 0.007 35.4 16.6 93 918-1014 347-444 (1243)
184 KOG4427 E3 ubiquitin protein l 58.6 24 0.00052 43.9 7.1 40 858-898 12-52 (1096)
185 PF11932 DUF3450: Protein of u 58.5 43 0.00093 37.0 8.8 20 996-1015 100-119 (251)
186 PRK10884 SH3 domain-containing 57.5 40 0.00086 36.3 8.0 33 978-1010 137-169 (206)
187 PRK09039 hypothetical protein; 56.7 1.2E+02 0.0026 35.3 12.3 39 968-1006 146-184 (343)
188 PF04899 MbeD_MobD: MbeD/MobD 56.1 48 0.001 29.6 6.8 63 951-1013 4-68 (70)
189 PF12128 DUF3584: Protein of u 55.0 4.3E+02 0.0092 36.1 18.8 42 969-1010 493-534 (1201)
190 PF06128 Shigella_OspC: Shigel 54.7 18 0.00039 39.1 4.7 48 657-704 229-280 (284)
191 KOG0995 Centromere-associated 53.7 1.1E+02 0.0024 37.5 11.4 28 868-895 264-291 (581)
192 PF15035 Rootletin: Ciliary ro 53.0 1.5E+02 0.0033 31.3 11.3 22 902-923 18-39 (182)
193 PRK11637 AmiB activator; Provi 52.9 50 0.0011 39.4 8.7 47 968-1014 84-130 (428)
194 PF10498 IFT57: Intra-flagella 52.1 69 0.0015 37.4 9.4 46 967-1012 274-319 (359)
195 PRK10884 SH3 domain-containing 52.1 55 0.0012 35.3 8.0 33 971-1003 137-169 (206)
196 KOG0377 Protein serine/threoni 51.7 20 0.00044 42.0 4.9 22 851-872 15-36 (631)
197 PF09099 Qn_am_d_aIII: Quinohe 51.7 71 0.0015 29.3 7.4 64 439-511 2-70 (81)
198 PF09726 Macoilin: Transmembra 51.5 2.6E+02 0.0057 35.7 15.0 23 941-963 540-562 (697)
199 KOG0994 Extracellular matrix g 50.6 7.8E+02 0.017 33.1 18.7 19 479-497 1092-1113(1758)
200 PRK15422 septal ring assembly 49.4 67 0.0015 29.2 6.7 59 955-1013 6-65 (79)
201 PRK11637 AmiB activator; Provi 49.4 63 0.0014 38.6 8.8 40 972-1011 81-120 (428)
202 PF14545 DBB: Dof, BCAP, and B 49.0 66 0.0014 32.6 7.5 77 444-527 3-87 (142)
203 KOG2264 Exostosin EXT1L [Signa 48.9 70 0.0015 38.8 8.6 51 966-1016 100-150 (907)
204 PF14197 Cep57_CLD_2: Centroso 48.2 60 0.0013 28.8 6.2 59 949-1013 8-66 (69)
205 KOG1962 B-cell receptor-associ 47.9 1.4E+02 0.0031 32.4 10.2 49 939-987 158-207 (216)
206 PF00170 bZIP_1: bZIP transcri 46.8 39 0.00085 29.1 4.9 34 981-1014 27-60 (64)
207 PF05529 Bap31: B-cell recepto 46.5 1.9E+02 0.0041 30.5 11.0 15 880-894 89-103 (192)
208 KOG3743 Recombination signal b 46.0 26 0.00057 42.0 4.7 71 452-529 505-586 (622)
209 KOG0994 Extracellular matrix g 45.7 9.2E+02 0.02 32.5 21.0 30 984-1013 1721-1750(1758)
210 PF05587 Anth_Ig: Anthrax rece 45.6 6.9 0.00015 37.4 0.0 74 440-516 7-88 (105)
211 PF11932 DUF3450: Protein of u 45.5 1.9E+02 0.0041 31.9 11.2 13 905-917 40-52 (251)
212 KOG0804 Cytoplasmic Zn-finger 45.2 1.9E+02 0.0041 34.5 11.2 27 989-1015 423-449 (493)
213 KOG0942 E3 ubiquitin protein l 44.7 28 0.0006 44.4 4.8 38 866-903 19-56 (1001)
214 PF10168 Nup88: Nuclear pore c 44.2 3.6E+02 0.0077 34.7 14.6 6 439-444 288-293 (717)
215 PRK09039 hypothetical protein; 44.0 93 0.002 36.1 8.8 50 967-1016 138-187 (343)
216 PF04156 IncA: IncA protein; 43.8 1.3E+02 0.0029 31.4 9.3 32 980-1011 158-189 (191)
217 PF04156 IncA: IncA protein; 43.7 1.6E+02 0.0035 30.8 10.0 44 968-1011 139-182 (191)
218 PRK13729 conjugal transfer pil 43.3 38 0.00082 40.7 5.5 47 967-1013 77-123 (475)
219 KOG0288 WD40 repeat protein Ti 43.1 72 0.0016 37.4 7.5 44 968-1011 29-72 (459)
220 TIGR02894 DNA_bind_RsfA transc 42.0 1E+02 0.0022 31.9 7.5 47 968-1014 99-145 (161)
221 PF04012 PspA_IM30: PspA/IM30 41.9 3.8E+02 0.0082 28.7 12.7 9 905-913 63-71 (221)
222 PF14197 Cep57_CLD_2: Centroso 41.5 1.1E+02 0.0025 27.1 6.9 23 985-1007 45-67 (69)
223 PF08826 DMPK_coil: DMPK coile 41.1 50 0.0011 28.7 4.5 43 971-1013 16-58 (61)
224 PF12128 DUF3584: Protein of u 41.1 4.3E+02 0.0094 36.1 15.6 58 954-1011 360-419 (1201)
225 PF07889 DUF1664: Protein of u 40.5 94 0.002 30.9 6.9 66 941-1006 56-122 (126)
226 PF06785 UPF0242: Uncharacteri 40.3 2.5E+02 0.0054 32.3 10.9 9 881-889 72-80 (401)
227 PRK04863 mukB cell division pr 40.2 1.2E+03 0.026 32.8 19.4 20 867-886 297-316 (1486)
228 PF14662 CCDC155: Coiled-coil 40.2 3E+02 0.0065 29.4 10.8 59 939-1003 81-139 (193)
229 PF10186 Atg14: UV radiation r 40.0 1.2E+02 0.0026 33.8 8.8 19 994-1012 119-137 (302)
230 TIGR03437 Soli_cterm Solibacte 39.7 93 0.002 33.8 7.4 64 452-515 3-75 (215)
231 PF15619 Lebercilin: Ciliary p 38.7 3.9E+02 0.0085 28.6 11.8 69 937-1005 116-189 (194)
232 PF10226 DUF2216: Uncharacteri 37.5 92 0.002 32.9 6.6 66 937-1002 7-77 (195)
233 TIGR01062 parC_Gneg DNA topois 37.2 6E+02 0.013 32.8 15.0 41 968-1008 426-466 (735)
234 PRK03918 chromosome segregatio 37.1 2.6E+02 0.0056 36.4 12.4 11 858-868 166-176 (880)
235 PF07888 CALCOCO1: Calcium bin 36.8 9.2E+02 0.02 29.9 16.1 63 953-1015 262-325 (546)
236 PF08317 Spc7: Spc7 kinetochor 36.4 7.1E+02 0.015 28.6 17.2 25 894-918 164-188 (325)
237 PF06156 DUF972: Protein of un 36.0 66 0.0014 31.0 5.0 42 972-1013 14-55 (107)
238 KOG0837 Transcriptional activa 35.7 77 0.0017 35.0 6.0 69 938-1013 199-267 (279)
239 PF03158 DUF249: Multigene fam 35.7 46 0.001 35.1 4.1 112 609-738 74-191 (192)
240 KOG0977 Nuclear envelope prote 35.4 2.9E+02 0.0062 34.1 11.3 37 969-1005 172-215 (546)
241 COG3074 Uncharacterized protei 35.2 1.4E+02 0.003 26.5 6.2 59 955-1013 6-65 (79)
242 PF11929 DUF3447: Domain of un 34.7 47 0.001 29.6 3.6 47 647-700 8-54 (76)
243 PF06005 DUF904: Protein of un 34.4 75 0.0016 28.5 4.7 47 967-1013 12-58 (72)
244 PF07888 CALCOCO1: Calcium bin 33.8 1E+03 0.022 29.6 16.1 28 985-1012 323-350 (546)
245 TIGR03017 EpsF chain length de 33.7 8.7E+02 0.019 28.8 16.2 17 899-915 184-200 (444)
246 PRK11578 macrolide transporter 33.6 1.4E+02 0.0031 34.6 8.4 36 944-979 97-133 (370)
247 TIGR03545 conserved hypothetic 33.5 1.5E+02 0.0033 36.8 8.8 6 912-917 180-185 (555)
248 KOG3584 cAMP response element 33.5 71 0.0015 35.7 5.3 7 438-444 214-220 (348)
249 TIGR01063 gyrA DNA gyrase, A s 33.3 7.2E+02 0.016 32.4 15.1 42 968-1009 429-470 (800)
250 TIGR02680 conserved hypothetic 33.2 1.5E+03 0.033 31.4 19.1 147 852-1013 222-373 (1353)
251 PF03106 WRKY: WRKY DNA -bindi 33.1 18 0.00039 31.2 0.6 8 70-77 2-9 (60)
252 PF00038 Filament: Intermediat 32.2 7.7E+02 0.017 27.7 17.2 18 942-959 169-186 (312)
253 TIGR01834 PHA_synth_III_E poly 31.9 4.6E+02 0.0099 30.3 11.6 31 985-1015 287-317 (320)
254 PF12728 HTH_17: Helix-turn-he 31.8 34 0.00073 27.8 2.0 43 26-68 1-47 (51)
255 PRK05560 DNA gyrase subunit A; 31.5 8.4E+02 0.018 31.8 15.4 42 968-1009 432-473 (805)
256 COG1196 Smc Chromosome segrega 31.4 4.2E+02 0.0092 36.0 13.2 67 943-1009 250-317 (1163)
257 PRK00888 ftsB cell division pr 31.1 40 0.00086 32.4 2.6 36 973-1008 27-62 (105)
258 PF11559 ADIP: Afadin- and alp 31.0 4.5E+02 0.0098 26.4 10.5 9 1002-1010 141-149 (151)
259 PRK05561 DNA topoisomerase IV 30.5 5.8E+02 0.013 33.0 13.5 41 968-1008 439-479 (742)
260 PF10146 zf-C4H2: Zinc finger- 30.4 2.2E+02 0.0049 31.2 8.6 26 985-1010 72-97 (230)
261 PF05278 PEARLI-4: Arabidopsis 30.3 8.3E+02 0.018 27.5 13.5 42 972-1013 220-261 (269)
262 KOG0976 Rho/Rac1-interacting s 30.3 8.6E+02 0.019 31.4 14.0 141 858-1012 229-376 (1265)
263 PF10186 Atg14: UV radiation r 30.0 6.1E+02 0.013 28.0 12.5 20 989-1008 128-147 (302)
264 KOG4643 Uncharacterized coiled 29.9 5.1E+02 0.011 34.2 12.3 60 949-1008 491-558 (1195)
265 COG1196 Smc Chromosome segrega 29.8 1.5E+03 0.033 30.8 18.0 37 974-1010 871-907 (1163)
266 smart00787 Spc7 Spc7 kinetocho 29.7 9.1E+02 0.02 27.8 15.1 35 967-1001 226-260 (312)
267 PF12325 TMF_TATA_bd: TATA ele 29.4 2.6E+02 0.0056 27.6 7.9 41 941-981 18-59 (120)
268 PF10205 KLRAQ: Predicted coil 29.1 4.8E+02 0.01 25.1 9.3 45 941-985 28-73 (102)
269 PF09789 DUF2353: Uncharacteri 28.5 9.7E+02 0.021 27.7 15.7 64 952-1015 85-161 (319)
270 PF12761 End3: Actin cytoskele 28.3 2.9E+02 0.0062 29.6 8.5 74 940-1013 97-193 (195)
271 PF04111 APG6: Autophagy prote 28.2 2.3E+02 0.005 32.5 8.7 19 993-1011 112-130 (314)
272 PF04111 APG6: Autophagy prote 28.2 80 0.0017 36.2 4.9 66 939-1004 43-109 (314)
273 KOG0162 Myosin class I heavy c 27.8 90 0.002 39.1 5.3 20 879-898 699-718 (1106)
274 smart00338 BRLZ basic region l 27.7 1.5E+02 0.0033 25.5 5.5 29 985-1013 31-59 (65)
275 TIGR01061 parC_Gpos DNA topois 27.7 9.5E+02 0.021 31.0 14.7 41 968-1008 429-469 (738)
276 PF12718 Tropomyosin_1: Tropom 27.5 3.3E+02 0.0072 27.6 8.7 72 940-1011 15-90 (143)
277 PF11929 DUF3447: Domain of un 27.5 81 0.0018 28.1 3.9 47 680-739 8-54 (76)
278 COG5185 HEC1 Protein involved 27.2 3.4E+02 0.0074 32.7 9.6 25 869-893 301-325 (622)
279 PF10146 zf-C4H2: Zinc finger- 27.0 5.8E+02 0.012 28.1 11.0 14 973-986 88-101 (230)
280 PF06428 Sec2p: GDP/GTP exchan 27.0 1E+02 0.0022 29.4 4.6 67 943-1011 12-82 (100)
281 KOG0979 Structural maintenance 26.8 1.6E+03 0.036 29.8 17.1 63 949-1011 293-356 (1072)
282 smart00774 WRKY DNA binding do 26.8 24 0.00052 30.4 0.3 8 70-77 2-9 (59)
283 COG0497 RecN ATPase involved i 26.6 1.1E+03 0.023 29.5 14.2 36 857-898 157-192 (557)
284 PF10482 CtIP_N: Tumour-suppre 26.5 2.5E+02 0.0053 27.5 6.9 45 967-1011 72-120 (120)
285 PF03962 Mnd1: Mnd1 family; I 26.3 1.5E+02 0.0033 31.4 6.3 19 994-1012 135-153 (188)
286 COG4372 Uncharacterized protei 26.3 6.5E+02 0.014 29.7 11.4 21 989-1009 174-194 (499)
287 PF04048 Sec8_exocyst: Sec8 ex 26.1 5.1E+02 0.011 26.0 9.8 58 954-1011 66-124 (142)
288 PF04880 NUDE_C: NUDE protein, 25.7 95 0.0021 32.4 4.4 15 989-1003 33-47 (166)
289 TIGR03185 DNA_S_dndD DNA sulfu 25.6 2.4E+02 0.0052 35.7 8.9 10 859-868 171-180 (650)
290 PF07851 TMPIT: TMPIT-like pro 24.9 3.5E+02 0.0077 31.3 9.2 37 972-1008 45-82 (330)
291 PF12808 Mto2_bdg: Micro-tubul 24.5 62 0.0013 27.2 2.3 25 983-1007 25-49 (52)
292 KOG0377 Protein serine/threoni 24.5 1.1E+02 0.0024 36.3 5.0 25 877-901 18-43 (631)
293 PF11180 DUF2968: Protein of u 24.4 4E+02 0.0087 28.4 8.7 37 967-1003 148-184 (192)
294 PRK06835 DNA replication prote 24.4 3E+02 0.0065 31.8 8.7 45 969-1015 39-86 (329)
295 PRK11546 zraP zinc resistance 23.9 2.2E+02 0.0048 29.0 6.5 46 969-1014 64-116 (143)
296 PRK03918 chromosome segregatio 23.9 6.1E+02 0.013 33.0 12.5 6 973-978 666-671 (880)
297 PF00170 bZIP_1: bZIP transcri 23.8 1.2E+02 0.0026 26.1 4.1 32 980-1011 33-64 (64)
298 KOG0972 Huntingtin interacting 23.5 4.2E+02 0.009 30.0 8.9 45 967-1011 281-325 (384)
299 TIGR03545 conserved hypothetic 23.3 2E+02 0.0044 35.7 7.4 28 899-926 160-187 (555)
300 PF15066 CAGE1: Cancer-associa 23.3 1.4E+03 0.03 27.8 13.9 21 851-871 394-414 (527)
301 KOG0977 Nuclear envelope prote 23.2 9.2E+02 0.02 29.9 12.6 63 948-1010 266-333 (546)
302 PF09789 DUF2353: Uncharacteri 23.0 1.6E+02 0.0034 34.0 5.9 25 985-1009 77-101 (319)
303 PF00261 Tropomyosin: Tropomyo 22.8 1E+03 0.022 26.0 13.6 12 992-1003 202-213 (237)
304 PF15188 CCDC-167: Coiled-coil 22.6 2.9E+02 0.0062 25.7 6.4 59 942-1003 8-66 (85)
305 PRK02224 chromosome segregatio 22.5 1.4E+03 0.03 29.9 15.3 141 868-1013 535-693 (880)
306 PF09728 Taxilin: Myosin-like 22.4 1.2E+03 0.026 26.7 15.6 77 939-1015 135-223 (309)
307 PF07798 DUF1640: Protein of u 22.4 4.7E+02 0.01 27.3 9.0 43 970-1015 117-159 (177)
308 PF05266 DUF724: Protein of un 22.4 9.3E+02 0.02 25.7 11.2 45 971-1015 143-187 (190)
309 PF05667 DUF812: Protein of un 21.9 5.3E+02 0.012 32.4 10.6 30 983-1012 501-530 (594)
310 PF04977 DivIC: Septum formati 21.7 1.2E+02 0.0026 26.7 3.9 26 981-1006 25-50 (80)
311 COG4985 ABC-type phosphate tra 21.7 3.2E+02 0.007 29.9 7.4 25 989-1013 223-247 (289)
312 PF07106 TBPIP: Tat binding pr 21.6 1.7E+02 0.0037 30.1 5.6 42 972-1013 92-135 (169)
313 PF02183 HALZ: Homeobox associ 21.6 1.1E+02 0.0023 25.0 3.1 35 969-1003 8-42 (45)
314 KOG0995 Centromere-associated 21.5 1E+03 0.022 29.6 12.3 42 973-1014 332-373 (581)
315 KOG1853 LIS1-interacting prote 21.2 3.9E+02 0.0085 29.6 8.0 31 981-1011 53-83 (333)
316 KOG0978 E3 ubiquitin ligase in 21.0 1.8E+03 0.04 28.3 15.8 46 967-1012 490-535 (698)
317 PRK13169 DNA replication intia 21.0 1.8E+02 0.0038 28.4 4.9 37 975-1011 17-53 (110)
318 PRK13979 DNA topoisomerase IV 20.9 6.3E+02 0.014 33.7 11.4 13 494-506 183-195 (957)
319 PF06248 Zw10: Centromere/kine 20.9 1.7E+03 0.036 27.8 15.2 20 994-1013 150-169 (593)
320 PF07106 TBPIP: Tat binding pr 20.8 2.3E+02 0.005 29.2 6.3 18 989-1006 118-135 (169)
321 PHA02562 46 endonuclease subun 20.8 1.1E+03 0.023 28.9 13.2 20 869-888 173-192 (562)
322 TIGR03007 pepcterm_ChnLen poly 20.4 1.1E+03 0.024 28.4 13.0 14 902-915 177-190 (498)
323 PF03158 DUF249: Multigene fam 20.3 1.4E+02 0.0029 31.8 4.3 92 645-745 76-171 (192)
324 TIGR01010 BexC_CtrB_KpsE polys 20.3 1.4E+03 0.029 26.5 13.9 23 894-916 178-200 (362)
325 COG5185 HEC1 Protein involved 20.1 1.6E+03 0.035 27.3 13.3 38 974-1011 369-406 (622)
326 KOG4674 Uncharacterized conser 20.1 1.7E+03 0.037 31.8 15.2 98 899-1015 1277-1374(1822)
327 TIGR02894 DNA_bind_RsfA transc 20.1 2.9E+02 0.0063 28.7 6.5 40 975-1014 99-138 (161)
328 cd00187 TOP4c DNA Topoisomeras 20.1 1.4E+03 0.031 27.6 13.4 41 972-1012 404-444 (445)
No 1
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=100.00 E-value=9.2e-135 Score=1206.60 Aligned_cols=905 Identities=38% Similarity=0.597 Sum_probs=631.5
Q ss_pred CCCCCCcccHHHHHHHHHhhcCChHHHHHHHHcccccccCCCCCCCCCCCceeeeehhhhhhhhccCccceeccCCCchH
Q 001754 6 RYVPNQQLDLEQILQEAQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVK 85 (1017)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~w~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~dg~~w~~~~~~~~~~ 85 (1017)
-|.+.+.||+..+++|++.|||+|+||++||+||++|.|+.+||+||.|||+||||||+|||||||||+|||||||||+|
T Consensus 16 ~~~sl~~l~~~~ll~~~~~rWl~~~EI~~il~n~~~~~lt~~s~trp~sGS~flfnRk~lr~fRKDGh~WkKkkDGKtir 95 (975)
T KOG0520|consen 16 PFKSLQDLDIQTLLPEAKSRWLTPEEILAILINHEKFTLTVSSPTRPQSGSIFLFNRKVLRYFRKDGHNWKKKKDGKTIR 95 (975)
T ss_pred chhhhhhhhhhhhhHHHHhccCChHHHHHHHhcccccccccCCCCCCCCCceeeeccHHHHHHhhcchhhhhcCCCCcCh
Confidence 35556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCEeeEEEEecccccCccccceeeeeccCCCccEEEEeeeccccCCCCCCCCCCCCCccccccccCcccccc
Q 001754 86 EAHEKLKAGSIDVLHCYYAHGEDNENFQRRSYWMLDGQLEHIVLVHYREVKEGYKSGRSAADPGSQIESSQTSSARSLAQ 165 (1017)
Q Consensus 86 e~h~~l~~~~~~~~~~~y~~~~~~~~f~rr~y~~~~~~~~~~v~vhy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1017)
||||||||||+|+||||||||++|||||||||||||+.++||||||||||++-+...+......+.+-| ....|..
T Consensus 96 EaHe~LKvg~~~~l~~~Y~Hg~~~ptF~RRcYwllq~~~~hIVLVHYl~v~~~~~~~~~~~~~~~s~~s---d~~~S~~- 171 (975)
T KOG0520|consen 96 EAHEKLKVGGVEVLHCYYAHGEINPTFQRRCYWLLQQELEHIVLVHYLNVKGNEDAAKGAGEIFSSIIS---DKAWSLN- 171 (975)
T ss_pred HHHHhhccCCccceeeeeecccccchHHHHHHHhhccccCceEEEEEeecccccccccCcccccccccc---cccccHH-
Confidence 999999999999999999999999999999999999999999999999999433321122111111100 0000111
Q ss_pred cCCCCCccCCCCCCCccccccCCcccccccccccCCCCCCCCCccccccccccccchhhhhhccCCccccCCCCcccCCC
Q 001754 166 ANSSAPAAQTSHASIPNKIDWNGQAVSSEFEDVDSGHGSGTPSVAQSIYGSMSQNASLVAASIAGLPELSRHPQWFAGSK 245 (1017)
Q Consensus 166 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1017)
+..+..+|- +. + . ++..+|++++++++.+..+....|. .
T Consensus 172 --------~~~~q~~~~-~~-~-~--~s~~~~v~~i~s~~~~~~~g~~~~~---------------s------------- 210 (975)
T KOG0520|consen 172 --------QLAGQLSPI-FH-N-H--SSVNEDVAEINSNQTGNALGSVFGN---------------S------------- 210 (975)
T ss_pred --------HhhcccCcc-hh-c-c--cchHHHHHHHhhhccccccccccCc---------------c-------------
Confidence 222222220 00 0 1 2457888876655554332222110 0
Q ss_pred CCCCCCCCCCCCcCCCC-cccccccccCCCCCcccCCCCCccccc--cccccccccc---cccccccCccccccccc--c
Q 001754 246 INHGSGSSMWPQIDNSS-RNATSVLDQHGHQNFYVGQPSGADFIT--HKLTDARLAS---DSTIANIGTCGERLITD--I 317 (1017)
Q Consensus 246 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~ 317 (1017)
..|...++..+..+ |..+...+. ++++..|....+.. +.+....... ...-+|.+..+...+.+ +
T Consensus 211 ---~~h~i~~~~~~s~~~~~~~p~s~~----s~~~~~~~~~~~~~~~~~~~~rs~~~s~~te~l~n~~~~~~~~g~s~s~ 283 (975)
T KOG0520|consen 211 ---RNHRIRLHEVNSLDPLYKLPVSDD----SLNLSAPKPIDLPKGPTSVKQRSSSPSYFTEILGNAPSGLVSQGNSLSS 283 (975)
T ss_pred ---hhhhhcccccCCccccccccccCC----ccccccCCCcccccCCcchhhcCCCCcchhhhcccCCCccccccccccc
Confidence 11111111111111 222222211 00000010000000 0000000000 00000000000000000 0
Q ss_pred ---ccccccccccccchhhhccccccccccccCCCCCccc--cc----cccc----CCCCCcc--ccccccccCcchhhh
Q 001754 318 ---DVHAVTTSSQGASQVLLEHNFNLINNQCQNCPVPEVT--VA----SVSQ----AGIKPKE--ELGELKKLDSFGRWM 382 (1017)
Q Consensus 318 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~----~~~~~~~--~~~~~~~~dsf~~w~ 382 (1017)
...+|+.........+...+|..+++........... .. ..+. .....+. .++|||+.|+|++||
T Consensus 284 ~l~~i~~~~~~~~~~~~~p~~~nf~~~ss~~s~~~~~~~g~g~~~~~~sa~~~~~P~~~~~~~~~~~~~l~sgdsf~~~~ 363 (975)
T KOG0520|consen 284 SLQRISSFTGLDNAAYEQPNSQNFEPNSSLNSHVTGQSYGQGLQARSPSATSESRPITSAADAALSELGLKSGDSFSRWA 363 (975)
T ss_pred chhhcccccccccccccCCccccccccccCCCCccccccCccccCCCcccccccCCcchhhccccccccccccccccchh
Confidence 0001111000000000000111111100000000000 00 0000 0111221 278999999999999
Q ss_pred HhhhcCCcCCCCccCCCCCcccccccccccccccccccccccccccCCCCcCcCCceEEEEeecCccccCCceEEEEEcc
Q 001754 383 DQEIGGDCDDSLMASDSGNYWNTLDAENDDKEVSSLSHHMQLEMDSLGPSLSQEQLFSIRDFSPDWAYSGAETKVLIIGM 462 (1017)
Q Consensus 383 ~~~l~~~~~~~~~~ss~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~q~f~I~d~sP~w~~~~ggtkVlV~G~ 462 (1017)
+ .+++ ..|..-.++.+..|..+. ....+++++ +++|. .+|+|+|+||||+|+|+.||+||+|+|+
T Consensus 364 ~-t~~e-~~d~~q~~s~~~~~~p~~--~~~~~~~s~----------~~~S~-p~qlf~I~DfSP~Wsy~~ggvKVlV~G~ 428 (975)
T KOG0520|consen 364 S-TFGE-ISDLGQDPSGEAVWTPEN--DPMGPPGSF----------LSPSS-PEQLFTITDFSPEWSYLDGGVKVLVTGF 428 (975)
T ss_pred h-hhcc-cccCCCCCccccccccCC--CcCCCcccc----------cCCCC-CcceeeeeccCcccccCCCCcEEEEecC
Confidence 7 6766 444442233355676662 222233322 55663 3999999999999999999999999998
Q ss_pred CCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCCCCceeeEEEecC-CCcccCcceeeeeecCCCCCCCCccccC
Q 001754 463 FLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGS-NRLACSEVREFEYREKPSKAGYPVASKI 541 (1017)
Q Consensus 463 ~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph~pG~Vp~~Vt~~-n~~~cSEv~~FEyr~~~~~~~~~~~~~~ 541 (1017)
+ .+.+...|+||||+++|||++|++|||||+||||.||+|+|||+|+ ++.+|||+++|+|...+...++..+ ..
T Consensus 429 ~----~~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~h~~G~V~l~V~c~~~~~~~se~ref~~~~~~~~~~d~~s-~~ 503 (975)
T KOG0520|consen 429 P----QDETRSNYSCMFGEQRVPAELIQEGVLRCYAPPHEPGVVNLQVTCRISGLACSEVREFAYLVQPSQQIDKLS-WE 503 (975)
T ss_pred c----cccCCCceEEEeCCccccHHHhhcceeeeecCccCCCeEEEEEEecccceeeeeehheeecccCcccccccc-cc
Confidence 3 3456899999999999999999999999999999999999999999 8999999999999999888776554 22
Q ss_pred CCchHHHHHHHHHHhhccCCcc-ccccccccchhhhh--hHHHHhhcccCCCCcccc-ccccccccccC---CCchHHHH
Q 001754 542 APEDEVRLQTRLAKFLYLDPER-KWFDCTIEDCNKCK--LKNTIYSMRGDSEKDWGR-VDESPMAIEGD---CPNSRDKL 614 (1017)
Q Consensus 542 ~~~~e~~Lq~Rl~~LL~~~~~~-~~~~~~~~~~~k~~--l~~~i~~l~~~~~~~w~~-l~e~l~~~~~~---~~~~~d~l 614 (1017)
....++.|+.||..|+...... .....+++..+... +..++..+ .++|.. + +.....+ ..+.++.+
T Consensus 504 d~~~~~sl~~rl~~~~~r~~~~~~s~~~~~n~~~~~~~~l~skv~~l----~~~~~~r~---~~~~~~~~~~~~~~r~~l 576 (975)
T KOG0520|consen 504 DFLFQMSLLHRLETMLNRKQSILSSKPSTENTSDAESGNLASKVVHL----LNEWAYRL---LKSISENLSSSVNFRDML 576 (975)
T ss_pred cchhhhHHHHHHHHHHHHhHhHhhccCCccccccccchhHHHHHHHH----HHHHHHHH---HhhHhhhccccCCCcchH
Confidence 3445666777777776632222 22333344444444 66777766 556666 4 3333222 26788999
Q ss_pred HHHHHHhhHHHHHHHHHHhC-CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHH
Q 001754 615 IQNLLRNRLCEWLVWKIHEG-GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREET 693 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~-Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ei 693 (1017)
|..++++.++.||++++++. |......|.+|+..+|++|..|+.+.+.+.+..|..++++|..||||||||+.+|++.+
T Consensus 577 llhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l 656 (975)
T KOG0520|consen 577 LLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKL 656 (975)
T ss_pred HHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHH
Confidence 99999999999999999997 88889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccc-hhHHHHHhHHHHHHHH
Q 001754 694 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMD-NVAAALAAEKANETAA 772 (1017)
Q Consensus 694 V~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G-~Ta~~ia~~~~ve~L~ 772 (1017)
+..|++.|++.++.++|++.++.|.|+..+|..+||.++..+|.++.+..++.++...+...+ .++..- ..+...
T Consensus 657 ~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~L~~~~~~~~~~~~~~s~~~~~~~----~~~t~~ 732 (975)
T KOG0520|consen 657 VASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKALSAHLSNLELADPNLSADSEEDK----AEKTSS 732 (975)
T ss_pred HHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhHHHHHHhhccccccccCCCchhhh----hhhccC
Confidence 999999999999999999999999999999999999999999999998888888887773212 222221 122211
Q ss_pred HcCCCCCCCchhhhhhhhchHHHHHhHHHHHHHHHHHHHHhhhhhhhcccCCch-----hHHHHHHHHhccccccccchh
Q 001754 773 QIGVQSDGPAAEQLSLRGSLAAVRKSAHAAALIQQAFRVRSFRHRQSIQSSDDV-----SEVSVDLVALGSLNKVSKMIH 847 (1017)
Q Consensus 773 e~~a~~~~~~~~~lslkdsL~AvR~A~~AA~rIQ~aFR~~s~Rkr~L~~~~~~~-----~e~~~~ila~q~~~r~~~~~~ 847 (1017)
+. +...+.+..+++|+|+|+|+|++||++||.+||+++++++.+.+...+. .+.+.++.+. .+-.
T Consensus 733 e~---s~~~~~~~~sl~Dtl~avrdAa~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~-------~a~~ 802 (975)
T KOG0520|consen 733 EG---SPNPDEDSDSLKDTLAAVRDAAQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKAS-------SAFS 802 (975)
T ss_pred CC---CCCCCccccccccccccccchHHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcc-------cchh
Confidence 11 2223344446999999999999999999999999999988876654322 2333333331 2111
Q ss_pred -h-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 001754 848 -F-EDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVG 925 (1017)
Q Consensus 848 -~-~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwr~kr~~Lr~~~~e 925 (1017)
+ ++....||..||+.||||+.|+.|+.+|+.+|+||+++||++.||+|+++.|||+.+||.++|||++++++|+|+.+
T Consensus 803 ~~~~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~ 882 (975)
T KOG0520|consen 803 MCDDRSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGR 882 (975)
T ss_pred cCccccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccc
Confidence 1 33567899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhH
Q 001754 926 NSTANVA-SENEKTDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNG 1004 (1017)
Q Consensus 926 ~~~~~~~-~~~~~~~~~d~L~~~rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~ 1004 (1017)
...+... +....++.|+|+|+.+++++.++++|+++||+|+|+++||+||||++.-+++.|... +.......++..+.
T Consensus 883 ~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~~~~~~~~~~-~~~~~~~~~~~~~~ 961 (975)
T KOG0520|consen 883 ALFEEQETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLLVYEQYQESY-KEEALVGLLDDSLF 961 (975)
T ss_pred cchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhh-hhhccccccccchh
Confidence 7554322 234558899999999999999999999999999999999999999998888777655 33334444444443
No 2
>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=4e-62 Score=454.92 Aligned_cols=117 Identities=67% Similarity=1.236 Sum_probs=114.6
Q ss_pred HHHHHhhcCChHHHHHHHHcccccccCCCCCCCCCCCceeeeehhhhhhhhccCccceeccCCCchHHHhhhcccCCEee
Q 001754 19 LQEAQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDV 98 (1017)
Q Consensus 19 ~~~~~~~w~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~dg~~w~~~~~~~~~~e~h~~l~~~~~~~ 98 (1017)
++| +.|||+|+||++||+||++|+|..+||++|+|||+|||||+++||||||||+|||||||||||||||||||||+|+
T Consensus 2 ~~~-~~rWl~~~Ei~~IL~n~~~~~~~~~~~~rP~sGslfLf~Rk~~r~fRkDG~~WrKkkdgktvRE~HekLKv~~~e~ 80 (118)
T PF03859_consen 2 LKE-KTRWLKPEEIAFILLNYEKFQIWLEPPNRPPSGSLFLFNRKVVRFFRKDGHNWRKKKDGKTVREDHEKLKVGGVEV 80 (118)
T ss_pred chH-hcccCCHHHHHHHHHhHHhCCcccCCCCCCCCceEEEEEchHhhhhhcccceeEEcCCCCchhhhhhhhccCceee
Confidence 445 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCccccceeeeeccCCCccEEEEeeeccc
Q 001754 99 LHCYYAHGEDNENFQRRSYWMLDGQLEHIVLVHYREVK 136 (1017)
Q Consensus 99 ~~~~y~~~~~~~~f~rr~y~~~~~~~~~~v~vhy~~~~ 136 (1017)
||||||||++|||||||||||||++|+||||||||||+
T Consensus 81 l~~~Yah~~~~~~F~RR~Ywll~~~~~~iVLVHY~~v~ 118 (118)
T PF03859_consen 81 LNCYYAHSEDNPTFHRRCYWLLDPPYEHIVLVHYLDVK 118 (118)
T ss_pred eEEEEEeeccCCCeeeEEEEccCCCCceEEEEEeeecC
Confidence 99999999999999999999999999999999999985
No 3
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-21 Score=194.54 Aligned_cols=127 Identities=28% Similarity=0.347 Sum_probs=64.3
Q ss_pred CCccCC-CCCcHHHHHHHcCChhhHHHHH-hCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCC
Q 001754 638 PNVIDD-GGQGVVHLAAALGYEWAMRPII-ATGVSPNFRDARGRTALHWASYFGREETVIMLVKL-GAAPGAVEDPTPAF 714 (1017)
Q Consensus 638 ~n~~D~-~G~TpLH~AA~~G~~~iVk~LL-~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~-GAd~n~~dd~~~~d 714 (1017)
+|.+++ +|+|||||||..|+.++|.+|+ ..++.+|.+|..||||||+||..|+.++|+.|+.. |+++|+.+
T Consensus 30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~t------ 103 (226)
T KOG4412|consen 30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATT------ 103 (226)
T ss_pred hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceec------
Confidence 344433 4555555555555555555555 33455555555555555555555555555555544 55555544
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHHHHHHHHcCC
Q 001754 715 PGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQIGV 776 (1017)
Q Consensus 715 ~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~ve~L~e~~a 776 (1017)
..|.||||||+..|..+|+++|+++| +.++++|.. |.||++.+ ..++++.|+..++
T Consensus 104 n~G~T~LHyAagK~r~eIaqlLle~g-----a~i~~kD~~-~qtplHRAAavGklkvie~Li~~~a 163 (226)
T KOG4412|consen 104 NGGQTCLHYAAGKGRLEIAQLLLEKG-----ALIRIKDKQ-GQTPLHRAAAVGKLKVIEYLISQGA 163 (226)
T ss_pred CCCcceehhhhcCChhhHHHHHHhcC-----CCCcccccc-cCchhHHHHhccchhhHHHHHhcCC
Confidence 35555555555555555555555555 444555554 55543322 3344455544444
No 4
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.8e-21 Score=190.54 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH-hCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhC-CCCCCccCCCCCchhhHHHh
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIH-EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIAT-GVSPNFRDARGRTALHWASY 687 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Ll-e~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~-Gadvn~~D~~G~TpLH~Aa~ 687 (1017)
...++||-++.-+-.+. +..|+ +.+..+|.+|+.||||||.||..|+.++|+.|+.. |+|+|..+..|.||||||+.
T Consensus 37 D~Rt~LHwa~S~g~~ei-v~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAag 115 (226)
T KOG4412|consen 37 DGRTPLHWACSFGHVEI-VYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAG 115 (226)
T ss_pred cCCceeeeeeecCchhH-HHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhc
Confidence 44566777776664443 34444 78899999999999999999999999999999988 99999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----
Q 001754 688 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA---- 763 (1017)
Q Consensus 688 ~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia---- 763 (1017)
.|+.+|+.+|+++|+.++++| ..|.||||-|+..|...++++|+..| +.++..|+. |.||++.+
T Consensus 116 K~r~eIaqlLle~ga~i~~kD------~~~qtplHRAAavGklkvie~Li~~~-----a~~n~qDk~-G~TpL~~al~e~ 183 (226)
T KOG4412|consen 116 KGRLEIAQLLLEKGALIRIKD------KQGQTPLHRAAAVGKLKVIEYLISQG-----APLNTQDKY-GFTPLHHALAEG 183 (226)
T ss_pred CChhhHHHHHHhcCCCCcccc------cccCchhHHHHhccchhhHHHHHhcC-----CCCCccccc-CccHHHHHHhcc
Confidence 999999999999999999988 79999999999999999999999999 889999999 99998887
Q ss_pred hHHHHHHHHHcCC
Q 001754 764 AEKANETAAQIGV 776 (1017)
Q Consensus 764 ~~~~ve~L~e~~a 776 (1017)
+......|++.+|
T Consensus 184 ~~d~a~lLV~~gA 196 (226)
T KOG4412|consen 184 HPDVAVLLVRAGA 196 (226)
T ss_pred CchHHHHHHHhcc
Confidence 3455566777776
No 5
>PHA02791 ankyrin-like protein; Provisional
Probab=99.77 E-value=3.3e-18 Score=189.65 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=131.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCC-chhhHHHhcCC
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGR-TALHWASYFGR 690 (1017)
Q Consensus 612 d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~-TpLH~Aa~~G~ 690 (1017)
.++||.++..+.. -+++.|+..|++++.+|..|+||||+||..|+.+++++|+.+|++++.++..|+ ||||+|+..|+
T Consensus 62 ~TpLh~Aa~~g~~-eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~ 140 (284)
T PHA02791 62 EFPLHQAATLEDT-KIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 140 (284)
T ss_pred CCHHHHHHHCCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCC
Confidence 5788888887654 456778899999999999999999999999999999999999999999999986 89999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchh-----HHHHHhH
Q 001754 691 EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNV-----AAALAAE 765 (1017)
Q Consensus 691 ~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~T-----a~~ia~~ 765 (1017)
.++|++|+++|++. .+. ..|.||||+|+..|+.+++++|+++| ++++.++.. |.+ |+..+..
T Consensus 141 ~eivk~LL~~~~~~--~d~-----~~g~TpLh~Aa~~g~~eiv~lLL~~g-----Ad~n~~d~~-g~t~~L~~Aa~~~~~ 207 (284)
T PHA02791 141 VSIVSYFLSEIPST--FDL-----AILLSCIHITIKNGHVDMMILLLDYM-----TSTNTNNSL-LFIPDIKLAIDNKDL 207 (284)
T ss_pred HHHHHHHHhcCCcc--ccc-----ccCccHHHHHHHcCCHHHHHHHHHCC-----CCCCcccCC-CCChHHHHHHHcCCH
Confidence 99999999987643 221 25899999999999999999999999 556666665 665 4455578
Q ss_pred HHHHHHHHcCC-CCCC
Q 001754 766 KANETAAQIGV-QSDG 780 (1017)
Q Consensus 766 ~~ve~L~e~~a-~~~~ 780 (1017)
++++.|++.++ .+..
T Consensus 208 e~v~lLl~~Ga~in~~ 223 (284)
T PHA02791 208 EMLQALFKYDINIYSV 223 (284)
T ss_pred HHHHHHHHCCCCCccC
Confidence 99999999998 4443
No 6
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.76 E-value=2.8e-18 Score=199.12 Aligned_cols=168 Identities=23% Similarity=0.243 Sum_probs=132.6
Q ss_pred HHHHHHhhHHHHHHHHHHhC-CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccC-CCCCchhhHHHhcCCHH
Q 001754 615 IQNLLRNRLCEWLVWKIHEG-GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRD-ARGRTALHWASYFGREE 692 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~-Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D-~~G~TpLH~Aa~~G~~e 692 (1017)
+..+++.+..+.+.. +++. |.+++..|.+|-|+|||||.+++.+++++||++|++||..+ .-|-|||||||++|+..
T Consensus 48 ~v~A~q~G~l~~v~~-lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~ 126 (600)
T KOG0509|consen 48 IVKATQYGELETVKE-LVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS 126 (600)
T ss_pred hhhHhhcchHHHHHH-HHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH
Confidence 344555555555443 5555 88999999999999999999999999999999999999988 55889999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHH----H
Q 001754 693 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKA----N 768 (1017)
Q Consensus 693 iV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~----v 768 (1017)
+|.+|+++||+++++| ..|.||||+|+..||.-++.||+.+| ++++++|.. |+||+..++-++ +
T Consensus 127 vv~lLlqhGAdpt~~D------~~G~~~lHla~~~~~~~~vayll~~~-----~d~d~~D~~-grTpLmwAaykg~~~~v 194 (600)
T KOG0509|consen 127 VVDLLLQHGADPTLKD------KQGLTPLHLAAQFGHTALVAYLLSKG-----ADIDLRDNN-GRTPLMWAAYKGFALFV 194 (600)
T ss_pred HHHHHHHcCCCCceec------CCCCcHHHHHHHhCchHHHHHHHHhc-----ccCCCcCCC-CCCHHHHHHHhcccHHH
Confidence 9999999999998888 69999999999999999999999999 788888888 999888876543 5
Q ss_pred HHHHHcCCCCCCCchhhhhhhhchHHHHHhHH
Q 001754 769 ETAAQIGVQSDGPAAEQLSLRGSLAAVRKSAH 800 (1017)
Q Consensus 769 e~L~e~~a~~~~~~~~~lslkdsL~AvR~A~~ 800 (1017)
..|+..++. .... ..++..++++.|..
T Consensus 195 ~~LL~f~a~-~~~~----d~~~g~TpLHwa~~ 221 (600)
T KOG0509|consen 195 RRLLKFGAS-LLLT----DDNHGNTPLHWAVV 221 (600)
T ss_pred HHHHHhccc-cccc----ccccCCchHHHHHh
Confidence 556666651 1111 13556677776554
No 7
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.74 E-value=1.6e-17 Score=176.55 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHhh-HHHHHHHHHHhCCCCCCccC-CCCCcHHHHHHHc---CChhhHHHHHhCCCCCCccCCCCCchhhH
Q 001754 610 SRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVID-DGGQGVVHLAAAL---GYEWAMRPIIATGVSPNFRDARGRTALHW 684 (1017)
Q Consensus 610 ~~d~ll~~al~~~-l~e~Lv~~Lle~Gad~n~~D-~~G~TpLH~AA~~---G~~~iVk~LL~~Gadvn~~D~~G~TpLH~ 684 (1017)
...++||.++..+ ....+++.|++.|+++|.++ ..|.||||+|+.. ++.+++++|+++|+++|.+|..|.||||+
T Consensus 50 ~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~ 129 (209)
T PHA02859 50 LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHM 129 (209)
T ss_pred cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 3456788777643 23467788999999999997 4899999998764 47899999999999999999999999999
Q ss_pred HHh--cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHH-HHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHH
Q 001754 685 ASY--FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADL-ASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 761 (1017)
Q Consensus 685 Aa~--~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhl-Aa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ 761 (1017)
|+. .++.+++++|+++|++++.++ ..|.||||. |+..|+.+++++|++.| ++++.++.. |.||++
T Consensus 130 a~~~~~~~~~iv~~Li~~gadin~~d------~~g~t~Lh~~a~~~~~~~iv~~Ll~~G-----adi~~~d~~-g~tpl~ 197 (209)
T PHA02859 130 YMCNFNVRINVIKLLIDSGVSFLNKD------FDNNNILYSYILFHSDKKIFDFLTSLG-----IDINETNKS-GYNCYD 197 (209)
T ss_pred HHHhccCCHHHHHHHHHcCCCccccc------CCCCcHHHHHHHhcCCHHHHHHHHHcC-----CCCCCCCCC-CCCHHH
Confidence 876 478999999999999999887 799999995 56788999999999999 777888887 999999
Q ss_pred HHhHH
Q 001754 762 LAAEK 766 (1017)
Q Consensus 762 ia~~~ 766 (1017)
++...
T Consensus 198 la~~~ 202 (209)
T PHA02859 198 LIKFR 202 (209)
T ss_pred HHhhh
Confidence 88543
No 8
>PHA02946 ankyin-like protein; Provisional
Probab=99.73 E-value=4.2e-17 Score=192.20 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=126.6
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC-
Q 001754 612 DKLIQNLLR-NRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG- 689 (1017)
Q Consensus 612 d~ll~~al~-~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G- 689 (1017)
..++|.++. .+....+++.|++.|+++|.+|..|.||||+||..|+.++|++||++|+++|.+|..|+||||+|+..+
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~ 117 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence 456665553 333456778889999999999999999999999999999999999999999999999999999998866
Q ss_pred -CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh----
Q 001754 690 -REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA---- 764 (1017)
Q Consensus 690 -~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~---- 764 (1017)
..+++++|+++|++++...+ ..|.|||| |+..|+.+++++|++.| ++++.++.. |.||++.+.
T Consensus 118 ~~~e~v~lLl~~Gadin~~~d-----~~g~tpL~-aa~~~~~~vv~~Ll~~g-----ad~~~~d~~-G~t~Lh~A~~~~~ 185 (446)
T PHA02946 118 EVIERINLLVQYGAKINNSVD-----EEGCGPLL-ACTDPSERVFKKIMSIG-----FEARIVDKF-GKNHIHRHLMSDN 185 (446)
T ss_pred chHHHHHHHHHcCCCcccccC-----CCCCcHHH-HHHCCChHHHHHHHhcc-----ccccccCCC-CCCHHHHHHHhcC
Confidence 47899999999999986432 68899997 66678899999999988 666777777 888877653
Q ss_pred --HHHHHHHHHcCC
Q 001754 765 --EKANETAAQIGV 776 (1017)
Q Consensus 765 --~~~ve~L~e~~a 776 (1017)
...++.|++.++
T Consensus 186 ~~~~~v~~Ll~~Ga 199 (446)
T PHA02946 186 PKASTISWMMKLGI 199 (446)
T ss_pred CCHHHHHHHHHcCC
Confidence 367788888887
No 9
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.72 E-value=5.3e-17 Score=193.04 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=124.2
Q ss_pred HHHHHHHhCCCCCCccCCC-CCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCC
Q 001754 626 WLVWKIHEGGKGPNVIDDG-GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 704 (1017)
Q Consensus 626 ~Lv~~Lle~Gad~n~~D~~-G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~ 704 (1017)
.+++.|++.|+++|..|.. |.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|++.|+++
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i 227 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST 227 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 4677788899999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHhc-CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH--hHHHHHHHHHcCC-CCC
Q 001754 705 GAVEDPTPAFPGGQTAADLASSR-GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA--AEKANETAAQIGV-QSD 779 (1017)
Q Consensus 705 n~~dd~~~~d~~G~TPLhlAa~~-G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia--~~~~ve~L~e~~a-~~~ 779 (1017)
+.++ ..|.||||+|+.. ++.+++++|+++| ++++..+...|.||++.+ ..+.++.|++.++ .+.
T Consensus 228 n~~d------~~g~TpLh~A~~~~~~~~iv~~Ll~~g-----advn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~ 295 (477)
T PHA02878 228 DARD------KCGNTPLHISVGYCKDYDILKLLLEHG-----VDVNAKSYILGLTALHSSIKSERKLKLLLEYGADINS 295 (477)
T ss_pred CCCC------CCCCCHHHHHHHhcCCHHHHHHHHHcC-----CCCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCCCC
Confidence 8887 6899999999975 7899999999999 566666552388888776 3567888899988 443
No 10
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.72 E-value=8.1e-17 Score=191.44 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=134.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChh--------------------------------
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEW-------------------------------- 659 (1017)
Q Consensus 612 d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~-------------------------------- 659 (1017)
-++||.|+..+..+ +++.|++.|+++|.+|..|.||||+||..|+.+
T Consensus 38 ~tPLh~A~~~g~~e-~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei 116 (477)
T PHA02878 38 FIPLHQAVEARNLD-VVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI 116 (477)
T ss_pred cchHHHHHHcCCHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence 35789999887554 557788999999999999999999999876432
Q ss_pred --------------------------------hHHHHHhCCCCCCccCCC-CCchhhHHHhcCCHHHHHHHHHcCCCCCC
Q 001754 660 --------------------------------AMRPIIATGVSPNFRDAR-GRTALHWASYFGREETVIMLVKLGAAPGA 706 (1017)
Q Consensus 660 --------------------------------iVk~LL~~Gadvn~~D~~-G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~ 706 (1017)
++++|+++|+++|.+|.. |+||||+||..|+.+++++|+++|++++.
T Consensus 117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~ 196 (477)
T PHA02878 117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI 196 (477)
T ss_pred HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC
Confidence 677788889999999999 99999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh-----HHHHHHHHHcCC
Q 001754 707 VEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA-----EKANETAAQIGV 776 (1017)
Q Consensus 707 ~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~-----~~~ve~L~e~~a 776 (1017)
.+ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++.+. .+.++.|++.++
T Consensus 197 ~d------~~g~tpLh~A~~~~~~~iv~~Ll~~g-----a~in~~d~~-g~TpLh~A~~~~~~~~iv~~Ll~~ga 259 (477)
T PHA02878 197 PD------KTNNSPLHHAVKHYNKPIVHILLENG-----ASTDARDKC-GNTPLHISVGYCKDYDILKLLLEHGV 259 (477)
T ss_pred cC------CCCCCHHHHHHHhCCHHHHHHHHHcC-----CCCCCCCCC-CCCHHHHHHHhcCCHHHHHHHHHcCC
Confidence 87 69999999999999999999999999 677778887 999987764 467889999997
No 11
>PHA02791 ankyrin-like protein; Provisional
Probab=99.72 E-value=6.9e-17 Score=179.19 Aligned_cols=151 Identities=17% Similarity=0.095 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 689 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G 689 (1017)
...+.|+.++..+.. .+++.|++.|++++..+ |.||||+|+..|+.++|++|+.+|++++.+|..|+||||+||..|
T Consensus 29 ~G~TpLh~Aa~~g~~-eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g 105 (284)
T PHA02791 29 HGHSALYYAIADNNV-RLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSG 105 (284)
T ss_pred CCCcHHHHHHHcCCH-HHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 456788999887744 46677899999998765 689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCC-CCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----h
Q 001754 690 REETVIMLVKLGAAPGAVEDPTPAFPGG-QTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----A 764 (1017)
Q Consensus 690 ~~eiV~~LL~~GAd~n~~dd~~~~d~~G-~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~ 764 (1017)
+.+++++|+++|++++..+ ..| .||||+|+..|+.+++++|++.|... .+ . .. |.||++++ +
T Consensus 106 ~~eivk~Ll~~gadin~~~------~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d--~--~~-g~TpLh~Aa~~g~ 172 (284)
T PHA02791 106 NMQTVKLFVKKNWRLMFYG------KTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FD--L--AI-LLSCIHITIKNGH 172 (284)
T ss_pred CHHHHHHHHHCCCCcCccC------CCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cc--c--cc-CccHHHHHHHcCC
Confidence 9999999999999998877 466 58999999999999999999987321 11 1 23 67776666 5
Q ss_pred HHHHHHHHHcCC
Q 001754 765 EKANETAAQIGV 776 (1017)
Q Consensus 765 ~~~ve~L~e~~a 776 (1017)
.++++.|++.++
T Consensus 173 ~eiv~lLL~~gA 184 (284)
T PHA02791 173 VDMMILLLDYMT 184 (284)
T ss_pred HHHHHHHHHCCC
Confidence 688999999997
No 12
>PHA02798 ankyrin-like protein; Provisional
Probab=99.71 E-value=9.4e-17 Score=191.56 Aligned_cols=161 Identities=14% Similarity=0.050 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHh----hHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC---ChhhHHHHHhCCCCCCccCCCCCchh
Q 001754 610 SRDKLIQNLLRN----RLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG---YEWAMRPIIATGVSPNFRDARGRTAL 682 (1017)
Q Consensus 610 ~~d~ll~~al~~----~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G---~~~iVk~LL~~Gadvn~~D~~G~TpL 682 (1017)
...++|+.++.. .-...+++.|+++|+++|.+|..|+||||+|+..| +.+++++|+++|++++.+|..|.|||
T Consensus 70 ~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL 149 (489)
T PHA02798 70 EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTML 149 (489)
T ss_pred CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHH
Confidence 344556655542 12345778888899999999999999999998876 67889999999999999999999999
Q ss_pred hHHHhcCC---HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhc----CcHHHHHHHHHccCCCCC----------
Q 001754 683 HWASYFGR---EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR----GHKGIAGYLAEADLSSHL---------- 745 (1017)
Q Consensus 683 H~Aa~~G~---~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~----G~~~iv~lLLe~Ga~~~~---------- 745 (1017)
|+|+..|+ .+++++|++.|++++..++ ..|.||||.++.. ++.+++++|+++|++.+.
T Consensus 150 ~~a~~~~~~~~~~vv~~Ll~~gadin~~~~-----~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~ 224 (489)
T PHA02798 150 QVYLQSNHHIDIEIIKLLLEKGVDINTHNN-----KEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFM 224 (489)
T ss_pred HHHHHcCCcchHHHHHHHHHhCCCcccccC-----cCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHH
Confidence 99999887 8899999999998887653 4677888877653 467788888877765432
Q ss_pred ------------------------cCCccccCccchhHHHHH----hHHHHHHHHHcCC
Q 001754 746 ------------------------SSLTVNENGMDNVAAALA----AEKANETAAQIGV 776 (1017)
Q Consensus 746 ------------------------a~l~l~d~~~G~Ta~~ia----~~~~ve~L~e~~a 776 (1017)
++++.++.. |.||++.| ..+.++.|++.|+
T Consensus 225 ~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~-G~TPL~~A~~~~~~~~v~~LL~~GA 282 (489)
T PHA02798 225 EYLNSLLYDNKRFKKNILDFIFSYIDINQVDEL-GFNPLYYSVSHNNRKIFEYLLQLGG 282 (489)
T ss_pred HHHHHHHhhcccchHHHHHHHHhcCCCCCcCcC-CccHHHHHHHcCcHHHHHHHHHcCC
Confidence 256777776 77877665 3567777777777
No 13
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.71 E-value=1.9e-17 Score=192.34 Aligned_cols=141 Identities=23% Similarity=0.255 Sum_probs=94.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCCCCCccC-CCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001754 613 KLIQNLLRNRLCEWLVWKIHEGGKGPNVID-DGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 613 ~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D-~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 691 (1017)
.+||-+..++-. .+++.|+++|+++|..+ ..|.|||||||++|+..+|.+|+++|||++.+|..|.||||.||..|+.
T Consensus 80 tlLHWAAiNNrl-~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~ 158 (600)
T KOG0509|consen 80 TLLHWAAINNRL-DVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHT 158 (600)
T ss_pred cceeHHHHcCcH-HHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCch
Confidence 445544443322 24456667777777766 4567777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH
Q 001754 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 692 eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~ 765 (1017)
-+|.+||.+|+++|.+| .+|+||||+|+..|+...+..|+..| +++...|..-|.||++.+..
T Consensus 159 ~~vayll~~~~d~d~~D------~~grTpLmwAaykg~~~~v~~LL~f~-----a~~~~~d~~~g~TpLHwa~~ 221 (600)
T KOG0509|consen 159 ALVAYLLSKGADIDLRD------NNGRTPLMWAAYKGFALFVRRLLKFG-----ASLLLTDDNHGNTPLHWAVV 221 (600)
T ss_pred HHHHHHHHhcccCCCcC------CCCCCHHHHHHHhcccHHHHHHHHhc-----ccccccccccCCchHHHHHh
Confidence 77777777777776666 57777777777777766677777777 55555552237777666643
No 14
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.71 E-value=7.9e-17 Score=165.22 Aligned_cols=125 Identities=21% Similarity=0.179 Sum_probs=108.6
Q ss_pred HHHHHHHhhHHH---HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhh---HHHHHhCCCCCCccC-CCCCchhhHHH
Q 001754 614 LIQNLLRNRLCE---WLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWA---MRPIIATGVSPNFRD-ARGRTALHWAS 686 (1017)
Q Consensus 614 ll~~al~~~l~e---~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~i---Vk~LL~~Gadvn~~D-~~G~TpLH~Aa 686 (1017)
.++.+++.+..+ .+++.|.+.|++++.+|..|+||||+||..|+.++ +++|+..|+++|.+| ..|.||||+|+
T Consensus 23 ~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~ 102 (166)
T PHA02743 23 TFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAA 102 (166)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHH
Confidence 456666655443 34456778999999999999999999999998765 799999999999998 58999999999
Q ss_pred hcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCC
Q 001754 687 YFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSH 744 (1017)
Q Consensus 687 ~~G~~eiV~~LL~-~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~ 744 (1017)
..|+.+++++|+. .|++++..+ ..|.||||+|+..|+.+++++|+++|++.+
T Consensus 103 ~~g~~~iv~~Ll~~~gad~~~~d------~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~ 155 (166)
T PHA02743 103 STKNYELAEWLCRQLGVNLGAIN------YQHETAYHIAYKMRDRRMMEILRANGAVCD 155 (166)
T ss_pred HhCCHHHHHHHHhccCCCccCcC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999995 899998877 799999999999999999999999994443
No 15
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.71 E-value=9.2e-17 Score=196.55 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHhh-HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCh--hhHHHHHhCCCCCCccCCCCCchhhHH-
Q 001754 610 SRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYE--WAMRPIIATGVSPNFRDARGRTALHWA- 685 (1017)
Q Consensus 610 ~~d~ll~~al~~~-l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~--~iVk~LL~~Gadvn~~D~~G~TpLH~A- 685 (1017)
...++||.++... ....+++.|++.|+++|.+|..|.||||+|+..|+. ++|++||++|+++|.+|..|+||||+|
T Consensus 176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai 255 (764)
T PHA02716 176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI 255 (764)
T ss_pred CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3456778665431 123577888999999999999999999999999964 899999999999999999999999975
Q ss_pred ------------------------------------HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHh--c
Q 001754 686 ------------------------------------SYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASS--R 727 (1017)
Q Consensus 686 ------------------------------------a~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~--~ 727 (1017)
+..|+.+++++|+++|++++.++ ..|+||||+|+. .
T Consensus 256 ~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD------~~G~TPLH~Aaa~~~ 329 (764)
T PHA02716 256 INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKD------SAGRTCLHQYILRHN 329 (764)
T ss_pred HhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccC------CCCCCHHHHHHHHhC
Confidence 34578899999999999998877 699999999764 4
Q ss_pred CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH------------------hHHHHHHHHHcCC-CCCC
Q 001754 728 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA------------------AEKANETAAQIGV-QSDG 780 (1017)
Q Consensus 728 G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia------------------~~~~ve~L~e~~a-~~~~ 780 (1017)
|+.+++++|++.| ++++.++.. |.||++.+ ..++++.|++.++ ....
T Consensus 330 ~~~eIVklLLe~G-----ADIN~kD~~-G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~k 395 (764)
T PHA02716 330 ISTDIIKLLHEYG-----NDLNEPDNI-GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV 395 (764)
T ss_pred CCchHHHHHHHcC-----CCCccCCCC-CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCc
Confidence 6889999999999 677888887 99999864 4588899999998 4433
No 16
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.71 E-value=1.5e-16 Score=186.84 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 689 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G 689 (1017)
...++||.++..+..+ +++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|
T Consensus 123 ~g~T~Lh~A~~~~~~~-~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g 201 (434)
T PHA02874 123 ELKTFLHYAIKKGDLE-SIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG 201 (434)
T ss_pred CCccHHHHHHHCCCHH-HHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 3457888888877655 457788999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh-----
Q 001754 690 REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA----- 764 (1017)
Q Consensus 690 ~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~----- 764 (1017)
+.+++++|++.|++++..+ ..|.||||+|+..++ .++.+|+ .| ++++..+.. |.||++.+.
T Consensus 202 ~~~iv~~Ll~~g~~i~~~~------~~g~TpL~~A~~~~~-~~i~~Ll-~~-----~~in~~d~~-G~TpLh~A~~~~~~ 267 (434)
T PHA02874 202 DYACIKLLIDHGNHIMNKC------KNGFTPLHNAIIHNR-SAIELLI-NN-----ASINDQDID-GSTPLHHAINPPCD 267 (434)
T ss_pred CHHHHHHHHhCCCCCcCCC------CCCCCHHHHHHHCCh-HHHHHHH-cC-----CCCCCcCCC-CCCHHHHHHhcCCc
Confidence 9999999999999887765 456666666665543 3334443 24 334445555 666655543
Q ss_pred HHHHHHHHHcCC
Q 001754 765 EKANETAAQIGV 776 (1017)
Q Consensus 765 ~~~ve~L~e~~a 776 (1017)
.+.++.|++.++
T Consensus 268 ~~iv~~Ll~~ga 279 (434)
T PHA02874 268 IDIIDILLYHKA 279 (434)
T ss_pred HHHHHHHHHCcC
Confidence 245556666555
No 17
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.70 E-value=2e-16 Score=185.85 Aligned_cols=135 Identities=17% Similarity=0.148 Sum_probs=121.8
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCC
Q 001754 626 WLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPG 705 (1017)
Q Consensus 626 ~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n 705 (1017)
.+++.|++.|++++.+|..|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n 184 (434)
T PHA02874 105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184 (434)
T ss_pred HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence 35667888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH---HHHHHHH
Q 001754 706 AVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE---KANETAA 772 (1017)
Q Consensus 706 ~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~---~~ve~L~ 772 (1017)
..+ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++.+.. ..+..|+
T Consensus 185 ~~~------~~g~tpL~~A~~~g~~~iv~~Ll~~g-----~~i~~~~~~-g~TpL~~A~~~~~~~i~~Ll 242 (434)
T PHA02874 185 VKD------NNGESPLHNAAEYGDYACIKLLIDHG-----NHIMNKCKN-GFTPLHNAIIHNRSAIELLI 242 (434)
T ss_pred CCC------CCCCCHHHHHHHcCCHHHHHHHHhCC-----CCCcCCCCC-CCCHHHHHHHCChHHHHHHH
Confidence 877 69999999999999999999999999 566677777 9999888753 4444444
No 18
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.70 E-value=1.7e-16 Score=200.27 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=108.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 691 (1017)
...++.++..+..+ +++.|++.|+++|..|..|+||||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.
T Consensus 526 ~~~L~~Aa~~g~~~-~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~ 604 (823)
T PLN03192 526 ASNLLTVASTGNAA-LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH 604 (823)
T ss_pred hhHHHHHHHcCCHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 45566666666544 56778899999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHH
Q 001754 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKA 767 (1017)
Q Consensus 692 eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~ 767 (1017)
+++++|+..++..+. ..|.+|||+|+..|+.+++++|+++| ++++.+|.. |.||++.+ +.++
T Consensus 605 ~iv~~L~~~~~~~~~--------~~~~~~L~~Aa~~g~~~~v~~Ll~~G-----adin~~d~~-G~TpLh~A~~~g~~~i 670 (823)
T PLN03192 605 KIFRILYHFASISDP--------HAAGDLLCTAAKRNDLTAMKELLKQG-----LNVDSEDHQ-GATALQVAMAEDHVDM 670 (823)
T ss_pred HHHHHHHhcCcccCc--------ccCchHHHHHHHhCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHCCcHHH
Confidence 777777665554332 23445666666666666666666655 444445554 55555443 2455
Q ss_pred HHHHHHcCC
Q 001754 768 NETAAQIGV 776 (1017)
Q Consensus 768 ve~L~e~~a 776 (1017)
++.|++.++
T Consensus 671 v~~Ll~~GA 679 (823)
T PLN03192 671 VRLLIMNGA 679 (823)
T ss_pred HHHHHHcCC
Confidence 555555555
No 19
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.69 E-value=4.4e-16 Score=165.63 Aligned_cols=149 Identities=15% Similarity=0.097 Sum_probs=124.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC--ChhhHHHHHhCCCCCCccC-CCCCchhhHHHhc
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG--YEWAMRPIIATGVSPNFRD-ARGRTALHWASYF 688 (1017)
Q Consensus 612 d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G--~~~iVk~LL~~Gadvn~~D-~~G~TpLH~Aa~~ 688 (1017)
...|+.++..+..+ +++.|++. +|..|..|.||||+|+..+ +.+++++|+++|+++|.++ ..|+||||+|+..
T Consensus 22 ~~pL~~A~~~~~~~-~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~ 97 (209)
T PHA02859 22 CNPLFYYVEKDDIE-GVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSF 97 (209)
T ss_pred CcHHHHHHHhCcHH-HHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh
Confidence 34577777776555 34445543 5678899999999999865 8999999999999999997 4899999998864
Q ss_pred ---CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHh--cCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH
Q 001754 689 ---GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASS--RGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 763 (1017)
Q Consensus 689 ---G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~--~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia 763 (1017)
++.+++++|+++|++++.++ ..|.||||+|+. .++.+++++|++.| ++++.++.. |.||++.+
T Consensus 98 ~~~~~~eiv~~Ll~~gadin~~d------~~G~TpLh~a~~~~~~~~~iv~~Li~~g-----adin~~d~~-g~t~Lh~~ 165 (209)
T PHA02859 98 NKNVEPEILKILIDSGSSITEED------EDGKNLLHMYMCNFNVRINVIKLLIDSG-----VSFLNKDFD-NNNILYSY 165 (209)
T ss_pred CccccHHHHHHHHHCCCCCCCcC------CCCCCHHHHHHHhccCCHHHHHHHHHcC-----CCcccccCC-CCcHHHHH
Confidence 57999999999999999887 799999999876 47899999999999 677778887 99988743
Q ss_pred -----hHHHHHHHHHcCC
Q 001754 764 -----AEKANETAAQIGV 776 (1017)
Q Consensus 764 -----~~~~ve~L~e~~a 776 (1017)
..+.++.|++.++
T Consensus 166 a~~~~~~~iv~~Ll~~Ga 183 (209)
T PHA02859 166 ILFHSDKKIFDFLTSLGI 183 (209)
T ss_pred HHhcCCHHHHHHHHHcCC
Confidence 3678899999987
No 20
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.69 E-value=2.3e-16 Score=187.01 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHhhH-HHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCC------Cchh
Q 001754 610 SRDKLIQNLLRNRL-CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARG------RTAL 682 (1017)
Q Consensus 610 ~~d~ll~~al~~~l-~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G------~TpL 682 (1017)
...++||.++..+. ...+++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..| .|||
T Consensus 140 ~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l 219 (480)
T PHA03100 140 DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPL 219 (480)
T ss_pred CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHH
Confidence 34567888877662 3445677888888888888888888888888888888888888888888888888 8888
Q ss_pred hHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHH
Q 001754 683 HWASYFGR--EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAA 760 (1017)
Q Consensus 683 H~Aa~~G~--~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~ 760 (1017)
|+|+..|+ .+++++|+++|++++.++ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.||+
T Consensus 220 ~~a~~~~~~~~~iv~~Ll~~g~din~~d------~~g~TpL~~A~~~~~~~iv~~Ll~~g-----ad~n~~d~~-g~tpl 287 (480)
T PHA03100 220 HIAACYNEITLEVVNYLLSYGVPINIKD------VYGFTPLHYAVYNNNPEFVKYLLDLG-----ANPNLVNKY-GDTPL 287 (480)
T ss_pred HHHHHhCcCcHHHHHHHHHcCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCC-CCcHH
Confidence 88888888 888888888888888777 68999999999999999999999998 567777777 88887
Q ss_pred HHHh----HHHHHHHHHcCC
Q 001754 761 ALAA----EKANETAAQIGV 776 (1017)
Q Consensus 761 ~ia~----~~~ve~L~e~~a 776 (1017)
+.+. .+.++.|++.++
T Consensus 288 ~~A~~~~~~~iv~~Ll~~g~ 307 (480)
T PHA03100 288 HIAILNNNKEIFKLLLNNGP 307 (480)
T ss_pred HHHHHhCCHHHHHHHHhcCC
Confidence 7664 567777777775
No 21
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.69 E-value=3.1e-16 Score=182.72 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=130.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhCCCCCC-ccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC
Q 001754 611 RDKLIQNLLRNRLCEWLVWKIHEGGKGPN-VIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 689 (1017)
Q Consensus 611 ~d~ll~~al~~~l~e~Lv~~Lle~Gad~n-~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G 689 (1017)
..+.||.++..+..+. ++.|++.|.+++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus 68 ~~t~L~~A~~~g~~~~-v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 68 IESELHDAVEEGDVKA-VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred cccHHHHHHHCCCHHH-HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 3567888888876654 567888887764 46778999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccch-hH----HHHHh
Q 001754 690 REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDN-VA----AALAA 764 (1017)
Q Consensus 690 ~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~-Ta----~~ia~ 764 (1017)
+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..+.. |. ++ ...+.
T Consensus 147 ~~~~v~~Ll~~g~~~~~~d------~~g~TpL~~A~~~g~~eiv~~Ll~~g-----a~~n~~~~~-~~~t~l~~A~~~~~ 214 (413)
T PHA02875 147 DIKGIELLIDHKACLDIED------CCGCTPLIIAMAKGDIAICKMLLDSG-----ANIDYFGKN-GCVAALCYAIENNK 214 (413)
T ss_pred CHHHHHHHHhcCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHhCC-----CCCCcCCCC-CCchHHHHHHHcCC
Confidence 9999999999999998877 69999999999999999999999999 455555554 43 43 44456
Q ss_pred HHHHHHHHHcCC
Q 001754 765 EKANETAAQIGV 776 (1017)
Q Consensus 765 ~~~ve~L~e~~a 776 (1017)
.+.++.|++.++
T Consensus 215 ~~iv~~Ll~~ga 226 (413)
T PHA02875 215 IDIVRLFIKRGA 226 (413)
T ss_pred HHHHHHHHHCCc
Confidence 789999999997
No 22
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.68 E-value=6.2e-16 Score=180.22 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCC-ccCCCCCchhhHHHhc
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPN-FRDARGRTALHWASYF 688 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn-~~D~~G~TpLH~Aa~~ 688 (1017)
...++||.++..+..+ +++.|++.|++++..+..|.||||+|+..|+.++++.|++.|++++ ..+..|+||||+|+..
T Consensus 34 ~g~tpL~~A~~~~~~~-~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 112 (413)
T PHA02875 34 DGISPIKLAMKFRDSE-AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATIL 112 (413)
T ss_pred CCCCHHHHHHHcCCHH-HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHh
Confidence 3556777777766544 5567778888888777788888888888888888888888887664 4466788888888888
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----h
Q 001754 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----A 764 (1017)
Q Consensus 689 G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~ 764 (1017)
|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.||++.+ .
T Consensus 113 ~~~~iv~~Ll~~gad~~~~~------~~g~tpLh~A~~~~~~~~v~~Ll~~g-----~~~~~~d~~-g~TpL~~A~~~g~ 180 (413)
T PHA02875 113 KKLDIMKLLIARGADPDIPN------TDKFSPLHLAVMMGDIKGIELLIDHK-----ACLDIEDCC-GCTPLIIAMAKGD 180 (413)
T ss_pred CCHHHHHHHHhCCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHhcC-----CCCCCCCCC-CCCHHHHHHHcCC
Confidence 88888888888888888776 67888888888888888888888888 566677777 88877666 4
Q ss_pred HHHHHHHHHcCC
Q 001754 765 EKANETAAQIGV 776 (1017)
Q Consensus 765 ~~~ve~L~e~~a 776 (1017)
.+.++.|++.++
T Consensus 181 ~eiv~~Ll~~ga 192 (413)
T PHA02875 181 IAICKMLLDSGA 192 (413)
T ss_pred HHHHHHHHhCCC
Confidence 567788888886
No 23
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.68 E-value=8e-17 Score=179.95 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=121.1
Q ss_pred HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCC
Q 001754 625 EWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 704 (1017)
Q Consensus 625 e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~ 704 (1017)
-.+++.|+++|+++|.......|||--||.-|+.++|++|+++|+|++..|..|.|.||+||.+||.+|+++|++.|||+
T Consensus 97 l~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv 176 (615)
T KOG0508|consen 97 LEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV 176 (615)
T ss_pred HHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCc
Confidence 34678899999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHHHHHHcC
Q 001754 705 GAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIG 775 (1017)
Q Consensus 705 n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~ve~L~e~~ 775 (1017)
|.++ ..|.|+||.|+..|+.+|+++|+..| +.+... .. |.||+-.+...++..++++.
T Consensus 177 n~ks------~kGNTALH~caEsG~vdivq~Ll~~g-----a~i~~d-~~-GmtPL~~Aa~tG~~~iVe~L 234 (615)
T KOG0508|consen 177 NAKS------YKGNTALHDCAESGSVDIVQLLLKHG-----AKIDVD-GH-GMTPLLLAAVTGHTDIVERL 234 (615)
T ss_pred chhc------ccCchHHHhhhhcccHHHHHHHHhCC-----ceeeec-CC-CCchHHHHhhhcchHHHHHH
Confidence 9988 79999999999999999999999999 555443 44 88877666555444444443
No 24
>PHA03095 ankyrin-like protein; Provisional
Probab=99.67 E-value=5.2e-16 Score=183.46 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=129.1
Q ss_pred chHHHHHHHHHHhh--HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC-ChhhHHHHHhCCCCCCccCCCCCchhhHH
Q 001754 609 NSRDKLIQNLLRNR--LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG-YEWAMRPIIATGVSPNFRDARGRTALHWA 685 (1017)
Q Consensus 609 ~~~d~ll~~al~~~--l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G-~~~iVk~LL~~Gadvn~~D~~G~TpLH~A 685 (1017)
....++||.++..+ ....+++.|++.|+++|.+|..|.||||+|+..| +.+++++|+++|+++|.+|..|.||||+|
T Consensus 45 ~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a 124 (471)
T PHA03095 45 EYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY 124 (471)
T ss_pred CCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 34567888888765 3455677888999999999999999999999999 58999999999999999999999999999
Q ss_pred H--hcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC--cHHHHHHHHHccCCCCCcCCccccCccchhHHH
Q 001754 686 S--YFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG--HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 761 (1017)
Q Consensus 686 a--~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G--~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ 761 (1017)
+ ..++.+++++|+++|++++..+ ..|.||||+|+..+ +.+++++|++.| ++++..+.. |.|+++
T Consensus 125 ~~~~~~~~~iv~~Ll~~gad~~~~d------~~g~tpL~~a~~~~~~~~~iv~~Ll~~g-----~~~~~~d~~-g~t~Lh 192 (471)
T PHA03095 125 LSGFNINPKVIRLLLRKGADVNALD------LYGMTPLAVLLKSRNANVELLRLLIDAG-----ADVYAVDDR-FRSLLH 192 (471)
T ss_pred hhCCcCCHHHHHHHHHcCCCCCccC------CCCCCHHHHHHHcCCCCHHHHHHHHHcC-----CCCcccCCC-CCCHHH
Confidence 9 5678899999999999988877 68999999888765 678999999999 455555666 888887
Q ss_pred HHh------HHHHHHHHHcCC-CCC
Q 001754 762 LAA------EKANETAAQIGV-QSD 779 (1017)
Q Consensus 762 ia~------~~~ve~L~e~~a-~~~ 779 (1017)
.+. ...++.|++.++ +..
T Consensus 193 ~~~~~~~~~~~i~~~Ll~~g~~~~~ 217 (471)
T PHA03095 193 HHLQSFKPRARIVRELIRAGCDPAA 217 (471)
T ss_pred HHHHHCCCcHHHHHHHHHcCCCCcc
Confidence 764 356778888887 443
No 25
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.67 E-value=9.8e-16 Score=183.08 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=123.7
Q ss_pred HHHHHHHHHhh-----HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHc---CChhhHHHHHhCCCCC-CccCCCCCchh
Q 001754 612 DKLIQNLLRNR-----LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAAL---GYEWAMRPIIATGVSP-NFRDARGRTAL 682 (1017)
Q Consensus 612 d~ll~~al~~~-----l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~---G~~~iVk~LL~~Gadv-n~~D~~G~TpL 682 (1017)
.++|+.++... -...+++.|+++|+++|.+|..|.||||.|+.. |+.+++++|+++|+|+ +.+|..|+|||
T Consensus 70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpL 149 (494)
T PHA02989 70 ETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLL 149 (494)
T ss_pred CCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHH
Confidence 45666555432 123567888899999999999999999987765 6789999999999999 78899999999
Q ss_pred hHHHhc--CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC----cHHHHHHHHHccCCCCCc----------
Q 001754 683 HWASYF--GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG----HKGIAGYLAEADLSSHLS---------- 746 (1017)
Q Consensus 683 H~Aa~~--G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G----~~~iv~lLLe~Ga~~~~a---------- 746 (1017)
|+|+.. ++.++|++|+++|++++...+ ..|.||||+|+..+ +.+++++|+++|++.+..
T Consensus 150 h~a~~~~~~~~~iv~~Ll~~Gadi~~~~~-----~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~ 224 (494)
T PHA02989 150 HMYLESFSVKKDVIKILLSFGVNLFEKTS-----LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLES 224 (494)
T ss_pred HHHHHhccCCHHHHHHHHHcCCCcccccc-----ccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHH
Confidence 998754 688999999999999887432 68899999887654 889999999999776533
Q ss_pred -----------------------CCccccCccchhHHHHHh----HHHHHHHHHcCC
Q 001754 747 -----------------------SLTVNENGMDNVAAALAA----EKANETAAQIGV 776 (1017)
Q Consensus 747 -----------------------~l~l~d~~~G~Ta~~ia~----~~~ve~L~e~~a 776 (1017)
+++.+|.. |.||++.+. .+.++.|++.|+
T Consensus 225 ~~~~~~~~~~~~~~il~~l~~~advn~~d~~-G~TpL~~Aa~~~~~~~v~~LL~~Ga 280 (494)
T PHA02989 225 FLDNNKILSKKEFKVLNFILKYIKINKKDKK-GFNPLLISAKVDNYEAFNYLLKLGD 280 (494)
T ss_pred HHHhchhhcccchHHHHHHHhCCCCCCCCCC-CCCHHHHHHHhcCHHHHHHHHHcCC
Confidence 24566666 888777664 567888888887
No 26
>PHA03095 ankyrin-like protein; Provisional
Probab=99.67 E-value=8.4e-16 Score=181.69 Aligned_cols=156 Identities=17% Similarity=0.047 Sum_probs=119.9
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHH--HcCChhhHHHHHhCCCCCCccCCCCCchhhHHH
Q 001754 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAA--ALGYEWAMRPIIATGVSPNFRDARGRTALHWAS 686 (1017)
Q Consensus 609 ~~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA--~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa 686 (1017)
....+.||.++..+....+++.|++.|+++|..|..|.||||+|+ ..++.+++++|++.|++++.+|..|.||||+|+
T Consensus 81 ~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~ 160 (471)
T PHA03095 81 RCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLL 160 (471)
T ss_pred CCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 345677888877765455677788888888888888888888888 445778888888888888888888888888887
Q ss_pred hcC--CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhc--CcHHHHHHHHHccCCCCCcCCccccCccchhHHHH
Q 001754 687 YFG--REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR--GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL 762 (1017)
Q Consensus 687 ~~G--~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~--G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~i 762 (1017)
..+ +.+++++|+++|++++..+ ..|.||||+|+.. ++.+++++|++.| ++++..+.. |.||++.
T Consensus 161 ~~~~~~~~iv~~Ll~~g~~~~~~d------~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-----~~~~~~d~~-g~tpLh~ 228 (471)
T PHA03095 161 KSRNANVELLRLLIDAGADVYAVD------DRFRSLLHHHLQSFKPRARIVRELIRAG-----CDPAATDML-GNTPLHS 228 (471)
T ss_pred HcCCCCHHHHHHHHHcCCCCcccC------CCCCCHHHHHHHHCCCcHHHHHHHHHcC-----CCCcccCCC-CCCHHHH
Confidence 765 5788888888888887765 6888888888764 6778888888888 566677777 8888887
Q ss_pred HhH------HHHHHHHHcCC
Q 001754 763 AAE------KANETAAQIGV 776 (1017)
Q Consensus 763 a~~------~~ve~L~e~~a 776 (1017)
+.. ..+..+++.++
T Consensus 229 Aa~~~~~~~~~v~~ll~~g~ 248 (471)
T PHA03095 229 MATGSSCKRSLVLPLLIAGI 248 (471)
T ss_pred HHhcCCchHHHHHHHHHcCC
Confidence 754 34556666665
No 27
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.66 E-value=1.2e-15 Score=181.02 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=70.1
Q ss_pred HHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHH--HcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC--CHHH
Q 001754 618 LLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAA--ALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG--REET 693 (1017)
Q Consensus 618 al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA--~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G--~~ei 693 (1017)
++..+.. .+++.|++.|++++..|..|.||||+|+ ..|+.+++++|+++|++++..|..|.||||+|+..| +.++
T Consensus 80 a~~~~~~-~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~i 158 (480)
T PHA03100 80 YNLTDVK-EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKI 158 (480)
T ss_pred HHhhchH-HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHH
Confidence 4444432 2345555666666666666666666666 666666666666666666666666666666666666 6666
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcc
Q 001754 694 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 694 V~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~G 740 (1017)
+++|+++|++++..+ ..|.||||+|+..|+.+++++|++.|
T Consensus 159 v~~Ll~~g~din~~d------~~g~tpL~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 159 LKLLIDKGVDINAKN------RYGYTPLHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred HHHHHHCCCCccccc------CCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 666666666665554 45666666666666666666666666
No 28
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.66 E-value=5.6e-16 Score=189.72 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhCC-CCCCcc-CCCCCcHHHHHHHc--CChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCC--HHHHHH
Q 001754 623 LCEWLVWKIHEGG-KGPNVI-DDGGQGVVHLAAAL--GYEWAMRPIIATGVSPNFRDARGRTALHWASYFGR--EETVIM 696 (1017)
Q Consensus 623 l~e~Lv~~Lle~G-ad~n~~-D~~G~TpLH~AA~~--G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~--~eiV~~ 696 (1017)
....+++.|++.| +++|.. |..|.||||+|+.. ++.+++++|+++|+++|.+|..|+||||+|+..|+ .++|++
T Consensus 153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl 232 (764)
T PHA02716 153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK 232 (764)
T ss_pred CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence 3446778888999 999998 89999999998754 57899999999999999999999999999999995 589999
Q ss_pred HHHcCCCCCCCCCCCCCCCCCCCHHHHH-------------------------------------HhcCcHHHHHHHHHc
Q 001754 697 LVKLGAAPGAVEDPTPAFPGGQTAADLA-------------------------------------SSRGHKGIAGYLAEA 739 (1017)
Q Consensus 697 LL~~GAd~n~~dd~~~~d~~G~TPLhlA-------------------------------------a~~G~~~iv~lLLe~ 739 (1017)
|+++||+++.++ ..|.||||+| +..|+.+++++|++.
T Consensus 233 LLe~GADVN~kD------~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~ 306 (764)
T PHA02716 233 IIELGGDMDMKC------VNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP 306 (764)
T ss_pred HHHcCCCCCCCC------CCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence 999999999987 6999999975 345788899999999
Q ss_pred cCCCCCcCCccccCccchhHHHHH------hHHHHHHHHHcCC
Q 001754 740 DLSSHLSSLTVNENGMDNVAAALA------AEKANETAAQIGV 776 (1017)
Q Consensus 740 Ga~~~~a~l~l~d~~~G~Ta~~ia------~~~~ve~L~e~~a 776 (1017)
| ++++.++.. |.||++.+ ..+.++.|++.++
T Consensus 307 G-----AdIN~kD~~-G~TPLH~Aaa~~~~~~eIVklLLe~GA 343 (764)
T PHA02716 307 G-----VKLHYKDSA-GRTCLHQYILRHNISTDIIKLLHEYGN 343 (764)
T ss_pred C-----CceeccCCC-CCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence 9 677888888 99999864 2478999999998
No 29
>PHA02798 ankyrin-like protein; Provisional
Probab=99.66 E-value=8.9e-16 Score=183.21 Aligned_cols=144 Identities=15% Similarity=0.097 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHc-----CChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC---CHHH
Q 001754 622 RLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAAL-----GYEWAMRPIIATGVSPNFRDARGRTALHWASYFG---REET 693 (1017)
Q Consensus 622 ~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~-----G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G---~~ei 693 (1017)
.....+++.|+++|+++|.+|..|.||||+|+.. ++.+++++|+++|+|+|.+|..|+||||+|+..| +.++
T Consensus 48 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i 127 (489)
T PHA02798 48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEI 127 (489)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH
Confidence 3345678889999999999999999999998864 6789999999999999999999999999999875 7899
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCc---HHHHHHHHHccCCCCCcCCccccCccchhHHHHH-------
Q 001754 694 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH---KGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA------- 763 (1017)
Q Consensus 694 V~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~---~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia------- 763 (1017)
+++|+++|++++..+ ..|.||||+|+..|+ .+++++|+++| ++++..+...|.||++..
T Consensus 128 v~~Ll~~Gadvn~~d------~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g-----adin~~~~~~~~t~Lh~~~~~~~~~ 196 (489)
T PHA02798 128 LLFMIENGADTTLLD------KDGFTMLQVYLQSNHHIDIEIIKLLLEKG-----VDINTHNNKEKYDTLHCYFKYNIDR 196 (489)
T ss_pred HHHHHHcCCCccccC------CCCCcHHHHHHHcCCcchHHHHHHHHHhC-----CCcccccCcCCCcHHHHHHHhcccc
Confidence 999999999999888 799999999999998 99999999999 555555432267776643
Q ss_pred -hHHHHHHHHHcCC
Q 001754 764 -AEKANETAAQIGV 776 (1017)
Q Consensus 764 -~~~~ve~L~e~~a 776 (1017)
..+.++.|++.++
T Consensus 197 ~~~~ivk~Li~~Ga 210 (489)
T PHA02798 197 IDADILKLFVDNGF 210 (489)
T ss_pred CCHHHHHHHHHCCC
Confidence 4678899999997
No 30
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.66 E-value=6.6e-16 Score=184.52 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhh--HHHHHHHHHHhCCCCC-CccCCCCCcHHHHHHHc--CChhhHHHHHhCCCCCCc-cCCCCCchhhH
Q 001754 611 RDKLIQNLLRNR--LCEWLVWKIHEGGKGP-NVIDDGGQGVVHLAAAL--GYEWAMRPIIATGVSPNF-RDARGRTALHW 684 (1017)
Q Consensus 611 ~d~ll~~al~~~--l~e~Lv~~Lle~Gad~-n~~D~~G~TpLH~AA~~--G~~~iVk~LL~~Gadvn~-~D~~G~TpLH~ 684 (1017)
..++|+.++... ....+++.|+++|+++ +..|..|.||||+|+.. ++.++|++|+++|++++. .+..|.||||+
T Consensus 108 g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~ 187 (494)
T PHA02989 108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI 187 (494)
T ss_pred CCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHH
Confidence 346677665432 1345788899999999 89999999999998764 688999999999999998 68899999999
Q ss_pred HHhc----CCHHHHHHHHHcCCCCCCCCC--------------------------------CCCCCCCCCCHHHHHHhcC
Q 001754 685 ASYF----GREETVIMLVKLGAAPGAVED--------------------------------PTPAFPGGQTAADLASSRG 728 (1017)
Q Consensus 685 Aa~~----G~~eiV~~LL~~GAd~n~~dd--------------------------------~~~~d~~G~TPLhlAa~~G 728 (1017)
|+.. ++.+++++|++.|++++..+. .+.+|..|.||||+|+..|
T Consensus 188 a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~ 267 (494)
T PHA02989 188 YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVD 267 (494)
T ss_pred HHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhc
Confidence 9875 489999999999999987652 3567788999999999999
Q ss_pred cHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh----HHHHHHHHHcC
Q 001754 729 HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA----EKANETAAQIG 775 (1017)
Q Consensus 729 ~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~----~~~ve~L~e~~ 775 (1017)
+.+++++|++.| ++++..+.. |.||++.+. .+.++.|++..
T Consensus 268 ~~~~v~~LL~~G-----adin~~d~~-G~TpL~~A~~~~~~~iv~~LL~~~ 312 (494)
T PHA02989 268 NYEAFNYLLKLG-----DDIYNVSKD-GDTVLTYAIKHGNIDMLNRILQLK 312 (494)
T ss_pred CHHHHHHHHHcC-----CCccccCCC-CCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999999 778888888 999888775 45666666655
No 31
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.65 E-value=1.3e-15 Score=151.45 Aligned_cols=142 Identities=21% Similarity=0.169 Sum_probs=113.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 691 (1017)
..++..+-+..+ ..+-.+|-+..-.+|.+|.+|.||||.|+.+||.+||+.|+..||+++++...||||||-||..++.
T Consensus 65 rl~lwaae~nrl-~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~ 143 (228)
T KOG0512|consen 65 RLLLWAAEKNRL-TEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF 143 (228)
T ss_pred HHHHHHHhhccH-HHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence 333444444443 3333334444556899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCc-HHHHHHHHHc-cCCCCCcCCccccCccchhHHHHHhHH
Q 001754 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH-KGIAGYLAEA-DLSSHLSSLTVNENGMDNVAAALAAEK 766 (1017)
Q Consensus 692 eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~-~~iv~lLLe~-Ga~~~~a~l~l~d~~~G~Ta~~ia~~~ 766 (1017)
+|+..||++|+++|+.+ ..-.||||+|+...+ ...+.+|+.. + .....+++. +.||..++...
T Consensus 144 ~va~~LLqhgaDVnA~t------~g~ltpLhlaa~~rn~r~t~~~Ll~dry-----i~pg~~nn~-eeta~~iARRT 208 (228)
T KOG0512|consen 144 EVAGRLLQHGADVNAQT------KGLLTPLHLAAGNRNSRDTLELLLHDRY-----IHPGLKNNL-EETAFDIARRT 208 (228)
T ss_pred hHHHHHHhccCcccccc------cccchhhHHhhcccchHHHHHHHhhccc-----cChhhhcCc-cchHHHHHHHh
Confidence 99999999999999998 578999999998765 4556666542 3 344556666 88898888655
No 32
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.64 E-value=2.3e-15 Score=186.62 Aligned_cols=155 Identities=23% Similarity=0.194 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC-ChhhHHHHHhCCCCCCccCCCCCchhhHHHhc
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG-YEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G-~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~ 688 (1017)
...+.||.++..+-...++..|++.|++++..|..|.||||+|+..| ..+++++|+..|++++..|..|+||||+|+..
T Consensus 272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~ 351 (682)
T PHA02876 272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL 351 (682)
T ss_pred CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence 34567777777665556677778888888888888888888888888 47788888888888888888888888888875
Q ss_pred -CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh---
Q 001754 689 -GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA--- 764 (1017)
Q Consensus 689 -G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~--- 764 (1017)
++.+++.+|++.|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.||++.+.
T Consensus 352 ~~~~~iv~lLl~~gadin~~d------~~G~TpLh~Aa~~~~~~iv~~Ll~~g-----ad~~~~~~~-g~T~Lh~A~~~~ 419 (682)
T PHA02876 352 DRNKDIVITLLELGANVNARD------YCDKTPIHYAAVRNNVVIINTLLDYG-----ADIEALSQK-IGTALHFALCGT 419 (682)
T ss_pred CCcHHHHHHHHHcCCCCccCC------CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCccccCCC-CCchHHHHHHcC
Confidence 46778888888888887776 57888888888888888888888888 555556665 777777664
Q ss_pred --HHHHHHHHHcCC
Q 001754 765 --EKANETAAQIGV 776 (1017)
Q Consensus 765 --~~~ve~L~e~~a 776 (1017)
...++.|++.++
T Consensus 420 ~~~~~vk~Ll~~ga 433 (682)
T PHA02876 420 NPYMSVKTLIDRGA 433 (682)
T ss_pred CHHHHHHHHHhCCC
Confidence 244667777776
No 33
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.64 E-value=3.9e-16 Score=165.12 Aligned_cols=129 Identities=24% Similarity=0.226 Sum_probs=119.2
Q ss_pred CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 001754 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAF 714 (1017)
Q Consensus 635 Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d 714 (1017)
.-|.|.-|..|.+||||||..|+..+|+.||..|+.+|..+....||||+||..||-++|..||+..+++|+++
T Consensus 24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavn------ 97 (448)
T KOG0195|consen 24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVN------ 97 (448)
T ss_pred ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhh------
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHHHHHHcC
Q 001754 715 PGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIG 775 (1017)
Q Consensus 715 ~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~ve~L~e~~ 775 (1017)
..|.|||||||..|+..|++-|+..| +.+++.+++ |.||++.+.....+.|.+..
T Consensus 98 ehgntplhyacfwgydqiaedli~~g-----a~v~icnk~-g~tpldkakp~l~~~l~e~a 152 (448)
T KOG0195|consen 98 EHGNTPLHYACFWGYDQIAEDLISCG-----AAVNICNKK-GMTPLDKAKPMLKNTLLEIA 152 (448)
T ss_pred ccCCCchhhhhhhcHHHHHHHHHhcc-----ceeeecccC-CCCchhhhchHHHHHHHHHH
Confidence 69999999999999999999999999 778888898 99999999876666665543
No 34
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.64 E-value=3.1e-15 Score=185.57 Aligned_cols=155 Identities=15% Similarity=0.083 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 689 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G 689 (1017)
...+.||.++..+-...++..|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 340 ~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~ 419 (682)
T PHA02876 340 LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGT 419 (682)
T ss_pred CCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcC
Confidence 34567777776554556777888999999999999999999999999999999999999999999999999999998766
Q ss_pred C-HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC-cHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH--
Q 001754 690 R-EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG-HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE-- 765 (1017)
Q Consensus 690 ~-~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G-~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~-- 765 (1017)
+ ..++++|++.|++++.++ ..|.||||+|+..| +.+++++|++.| ++++..+.. |.||+..+..
T Consensus 420 ~~~~~vk~Ll~~gadin~~d------~~G~TpLh~Aa~~~~~~~iv~lLl~~G-----ad~n~~d~~-g~tpl~~a~~~~ 487 (682)
T PHA02876 420 NPYMSVKTLIDRGANVNSKN------KDLSTPLHYACKKNCKLDVIEMLLDNG-----ADVNAINIQ-NQYPLLIALEYH 487 (682)
T ss_pred CHHHHHHHHHhCCCCCCcCC------CCCChHHHHHHHhCCcHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHhC
Confidence 5 567899999999998887 69999999999876 689999999999 777888887 9998876643
Q ss_pred HHHHHHHHcCC
Q 001754 766 KANETAAQIGV 776 (1017)
Q Consensus 766 ~~ve~L~e~~a 776 (1017)
..++.++..++
T Consensus 488 ~~v~~Ll~~~a 498 (682)
T PHA02876 488 GIVNILLHYGA 498 (682)
T ss_pred CHHHHHHHCCC
Confidence 46677777776
No 35
>PHA02946 ankyin-like protein; Provisional
Probab=99.63 E-value=2e-15 Score=178.11 Aligned_cols=153 Identities=11% Similarity=0.066 Sum_probs=124.9
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCC--hhhHHHHHhCCCCCCc-cCCCCCchhhHH
Q 001754 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGY--EWAMRPIIATGVSPNF-RDARGRTALHWA 685 (1017)
Q Consensus 609 ~~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~--~~iVk~LL~~Gadvn~-~D~~G~TpLH~A 685 (1017)
....++||.++..+.. .+++.|+++|+++|.+|..|+||||+|+..++ .+++++|+++|+++|. .|..|.|||| |
T Consensus 70 ~~G~TpLh~Aa~~g~~-eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-a 147 (446)
T PHA02946 70 DDGNYPLHIASKINNN-RIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-A 147 (446)
T ss_pred CCCCCHHHHHHHcCCH-HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-H
Confidence 3456789998887754 46788899999999999999999999988764 7889999999999995 6888999997 6
Q ss_pred HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC--cHHHHHHHHHccCCCCCcCCccccCccchhHHHHH
Q 001754 686 SYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG--HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 763 (1017)
Q Consensus 686 a~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G--~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia 763 (1017)
|..|+.+++++|+++|++++..+ ..|+||||+|+..+ +.+++++|++.| ++++.+|.. |.||++++
T Consensus 148 a~~~~~~vv~~Ll~~gad~~~~d------~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-----adin~~d~~-G~TpLH~A 215 (446)
T PHA02946 148 CTDPSERVFKKIMSIGFEARIVD------KFGKNHIHRHLMSDNPKASTISWMMKLG-----ISPSKPDHD-GNTPLHIV 215 (446)
T ss_pred HHCCChHHHHHHHhccccccccC------CCCCCHHHHHHHhcCCCHHHHHHHHHcC-----CCCcccCCC-CCCHHHHH
Confidence 66789999999999999998877 68999999887754 468899999999 677778877 89998887
Q ss_pred hH------HHHHHHHHcCC
Q 001754 764 AE------KANETAAQIGV 776 (1017)
Q Consensus 764 ~~------~~ve~L~e~~a 776 (1017)
.. +.++.|+. ++
T Consensus 216 a~~~~~~~~iv~lLl~-ga 233 (446)
T PHA02946 216 CSKTVKNVDIINLLLP-ST 233 (446)
T ss_pred HHcCCCcHHHHHHHHc-CC
Confidence 54 34555553 44
No 36
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=155.76 Aligned_cols=132 Identities=22% Similarity=0.226 Sum_probs=116.1
Q ss_pred CCCCCCccCCCCCcHHHHHHHcCCh----hhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHH---HHHHHHcCCCCCC
Q 001754 634 GGKGPNVIDDGGQGVVHLAAALGYE----WAMRPIIATGVSPNFRDARGRTALHWASYFGREET---VIMLVKLGAAPGA 706 (1017)
Q Consensus 634 ~Gad~n~~D~~G~TpLH~AA~~G~~----~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ei---V~~LL~~GAd~n~ 706 (1017)
+|++++..+.++.++||.||..|+. +++++|+..|++++.+|..|+||||+||..|+.++ +++|+.+|++++.
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~ 88 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA 88 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence 5678888899999999999999998 66778889999999999999999999999998654 8999999999998
Q ss_pred CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH-ccCCCCCcCCccccCccchhHHHHHh----HHHHHHHHHcCC
Q 001754 707 VEDPTPAFPGGQTAADLASSRGHKGIAGYLAE-ADLSSHLSSLTVNENGMDNVAAALAA----EKANETAAQIGV 776 (1017)
Q Consensus 707 ~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe-~Ga~~~~a~l~l~d~~~G~Ta~~ia~----~~~ve~L~e~~a 776 (1017)
++. ..|.||||+|+..|+.+++++|++ .| ++++..+.. |.||++++. .+.++.|+..++
T Consensus 89 ~d~-----~~g~TpLh~A~~~g~~~iv~~Ll~~~g-----ad~~~~d~~-g~tpL~~A~~~~~~~iv~~Ll~~ga 152 (166)
T PHA02743 89 REL-----GTGNTLLHIAASTKNYELAEWLCRQLG-----VNLGAINYQ-HETAYHIAYKMRDRRMMEILRANGA 152 (166)
T ss_pred CCC-----CCCCcHHHHHHHhCCHHHHHHHHhccC-----CCccCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 762 379999999999999999999995 78 677778877 999887775 578899999887
No 37
>PHA02741 hypothetical protein; Provisional
Probab=99.63 E-value=1.2e-15 Score=156.81 Aligned_cols=114 Identities=25% Similarity=0.253 Sum_probs=69.1
Q ss_pred CccCCCCCcHHHHHHHcCChhhHHHHHh------CCCCCCccCCCCCchhhHHHhcCC----HHHHHHHHHcCCCCCCCC
Q 001754 639 NVIDDGGQGVVHLAAALGYEWAMRPIIA------TGVSPNFRDARGRTALHWASYFGR----EETVIMLVKLGAAPGAVE 708 (1017)
Q Consensus 639 n~~D~~G~TpLH~AA~~G~~~iVk~LL~------~Gadvn~~D~~G~TpLH~Aa~~G~----~eiV~~LL~~GAd~n~~d 708 (1017)
+.+|..|.||||+||..|+.++++.|+. .|++++.+|..|+||||+|+..|+ .+++++|+.+|++++.++
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 3455566666666666666666666532 246666666666666666666666 356666666666666554
Q ss_pred CCCCCCCCCCCHHHHHHhcCcHHHHHHHHH-ccCCCCCcCCccccCccchhHHHHH
Q 001754 709 DPTPAFPGGQTAADLASSRGHKGIAGYLAE-ADLSSHLSSLTVNENGMDNVAAALA 763 (1017)
Q Consensus 709 d~~~~d~~G~TPLhlAa~~G~~~iv~lLLe-~Ga~~~~a~l~l~d~~~G~Ta~~ia 763 (1017)
. ..|.||||+|+..|+.+++++|+. .| .+++.++.. |.||++.+
T Consensus 95 ~-----~~g~TpLh~A~~~~~~~iv~~Ll~~~g-----~~~~~~n~~-g~tpL~~A 139 (169)
T PHA02741 95 M-----LEGDTALHLAAHRRDHDLAEWLCCQPG-----IDLHFCNAD-NKSPFELA 139 (169)
T ss_pred c-----CCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCCcCCCC-CCCHHHHH
Confidence 1 256666666666666666666665 35 444555555 66665554
No 38
>PHA02795 ankyrin-like protein; Provisional
Probab=99.62 E-value=3.9e-15 Score=172.10 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=131.9
Q ss_pred chHHHHHHHHHHhh-HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCcc------CCCCCch
Q 001754 609 NSRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFR------DARGRTA 681 (1017)
Q Consensus 609 ~~~d~ll~~al~~~-l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~------D~~G~Tp 681 (1017)
+...++||.++... ...-+++.|+++|++++.. ++.||||+|+..|+.+++++|+.+|++.+.. +..|.||
T Consensus 114 ~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~ 191 (437)
T PHA02795 114 NSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR 191 (437)
T ss_pred ccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccch
Confidence 44678888888832 2455788899999999985 4589999999999999999999999854322 2348899
Q ss_pred hhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHH
Q 001754 682 LHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 761 (1017)
Q Consensus 682 LH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ 761 (1017)
+|.|+..++.+++++|+++||++|.++ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++
T Consensus 192 l~~a~~~~~~eIve~LIs~GADIN~kD------~~G~TpLh~Aa~~g~~eiVelLL~~G-----AdIN~~d~~-G~TpLh 259 (437)
T PHA02795 192 GFLVDEPTVLEIYKLCIPYIEDINQLD------AGGRTLLYRAIYAGYIDLVSWLLENG-----ANVNAVMSN-GYTCLD 259 (437)
T ss_pred hHHHHhcCHHHHHHHHHhCcCCcCcCC------CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCC-CCCHHH
Confidence 999999999999999999999999887 79999999999999999999999999 778888888 999998
Q ss_pred HHhH------------HHHHHHHHcCC
Q 001754 762 LAAE------------KANETAAQIGV 776 (1017)
Q Consensus 762 ia~~------------~~ve~L~e~~a 776 (1017)
.+.. +.++.|++.++
T Consensus 260 ~Aa~~g~~~~~~~~~~eIvelLL~~ga 286 (437)
T PHA02795 260 VAVDRGSVIARRETHLKILEILLREPL 286 (437)
T ss_pred HHHHcCCcccccccHHHHHHHHHhCCC
Confidence 8753 57788887775
No 39
>PHA02741 hypothetical protein; Provisional
Probab=99.62 E-value=2.5e-15 Score=154.37 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH------hCCCCCCccCCCCCcHHHHHHHcCC----hhhHHHHHhCCCCCCccCC-CC
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIH------EGGKGPNVIDDGGQGVVHLAAALGY----EWAMRPIIATGVSPNFRDA-RG 678 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Ll------e~Gad~n~~D~~G~TpLH~AA~~G~----~~iVk~LL~~Gadvn~~D~-~G 678 (1017)
...+.||.++..+..+.+ +.|+ ..|++++.+|..|+||||+|+..|+ .+++++|+.+|+++|.+|. .|
T Consensus 20 ~g~t~Lh~Aa~~g~~~~v-~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g 98 (169)
T PHA02741 20 EGENFFHEAARCGCFDII-ARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG 98 (169)
T ss_pred CCCCHHHHHHHcCCHHHH-HHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence 345678888876655433 3232 3468899999999999999999998 5889999999999999985 89
Q ss_pred CchhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCC
Q 001754 679 RTALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLS 742 (1017)
Q Consensus 679 ~TpLH~Aa~~G~~eiV~~LL~-~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~ 742 (1017)
+||||+|+..++.+++++|+. .|++++..+ ..|.||||+|+..|+.+++++|++.++.
T Consensus 99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n------~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 99 DTALHLAAHRRDHDLAEWLCCQPGIDLHFCN------ADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC------CCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 599998877 7999999999999999999999998744
No 40
>PHA02730 ankyrin-like protein; Provisional
Probab=99.60 E-value=7.6e-15 Score=176.91 Aligned_cols=158 Identities=13% Similarity=0.036 Sum_probs=131.7
Q ss_pred CCchHHHHHHHHHHhh--HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCC----hhhHHHHHhCCC--CCCccCCCC
Q 001754 607 CPNSRDKLIQNLLRNR--LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGY----EWAMRPIIATGV--SPNFRDARG 678 (1017)
Q Consensus 607 ~~~~~d~ll~~al~~~--l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~----~~iVk~LL~~Ga--dvn~~D~~G 678 (1017)
..+..+.+|+.-+... ...-+++.|+++|+++|.. ..|.||||+|+..++ .+++++||.+|+ ++|.+|..|
T Consensus 339 ~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G 417 (672)
T PHA02730 339 DESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNG 417 (672)
T ss_pred chhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCC
Confidence 3456677777777655 4667889999999999985 799999999998885 899999999998 699999999
Q ss_pred CchhhH---HHhcC---------CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCc
Q 001754 679 RTALHW---ASYFG---------REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLS 746 (1017)
Q Consensus 679 ~TpLH~---Aa~~G---------~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a 746 (1017)
.||||. |...+ ..+++++|+.+||+++.++ ..|.||||+|+..++.+++++|+++| +
T Consensus 418 ~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD------~~G~TPLh~Aa~~~~~eive~LI~~G-----A 486 (672)
T PHA02730 418 RLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMID------NENKTLLYYAVDVNNIQFARRLLEYG-----A 486 (672)
T ss_pred CchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccC------CCCCCHHHHHHHhCCHHHHHHHHHCC-----C
Confidence 999994 33332 2356999999999999988 69999999999999999999999999 6
Q ss_pred CCccccCccchhHHHHHh------HHHHHHHHHcCC
Q 001754 747 SLTVNENGMDNVAAALAA------EKANETAAQIGV 776 (1017)
Q Consensus 747 ~l~l~d~~~G~Ta~~ia~------~~~ve~L~e~~a 776 (1017)
+++..+...|.||++.+. .+.++.|++.++
T Consensus 487 dIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga 522 (672)
T PHA02730 487 SVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP 522 (672)
T ss_pred CCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence 677777523889998874 458899988885
No 41
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.60 E-value=2e-15 Score=154.95 Aligned_cols=129 Identities=18% Similarity=0.132 Sum_probs=114.7
Q ss_pred CCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 001754 634 GGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPA 713 (1017)
Q Consensus 634 ~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~ 713 (1017)
....+|..|+.|.|||.||+..|++++|++||..|++++...+...|+|.+|+..|..+||++||.++.|+|..|
T Consensus 149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyD----- 223 (296)
T KOG0502|consen 149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYD----- 223 (296)
T ss_pred hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceec-----
Confidence 445789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH---HHHHHHHHc
Q 001754 714 FPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE---KANETAAQI 774 (1017)
Q Consensus 714 d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~---~~ve~L~e~ 774 (1017)
.+|.|||-+|+..||.+|++.|++.| ++++..+.. |.++.+++-. ..|+.+++.
T Consensus 224 -wNGgTpLlyAvrgnhvkcve~Ll~sG-----Ad~t~e~ds-Gy~~mdlAValGyr~Vqqvie~ 280 (296)
T KOG0502|consen 224 -WNGGTPLLYAVRGNHVKCVESLLNSG-----ADVTQEDDS-GYWIMDLAVALGYRIVQQVIEK 280 (296)
T ss_pred -cCCCceeeeeecCChHHHHHHHHhcC-----CCccccccc-CCcHHHHHHHhhhHHHHHHHHH
Confidence 59999999999999999999999999 778887776 8887666533 244444443
No 42
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.60 E-value=6.7e-15 Score=163.87 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=107.5
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccC----CCCCcHHHHHHHcCChhhHHHHHhCCCCCCcc-CCCCCchh
Q 001754 608 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVID----DGGQGVVHLAAALGYEWAMRPIIATGVSPNFR-DARGRTAL 682 (1017)
Q Consensus 608 ~~~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D----~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~-D~~G~TpL 682 (1017)
......+++.+++.+. ..+++.|+++|+++|.++ ..|.||||+|+..|+.+++++|+++|+++|.+ +..|.|||
T Consensus 30 ~~~~~~lL~~A~~~~~-~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL 108 (300)
T PHA02884 30 KICIANILYSSIKFHY-TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL 108 (300)
T ss_pred cCCCCHHHHHHHHcCC-HHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence 3455677888887654 346678899999999874 58999999999999999999999999999986 45799999
Q ss_pred hHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001754 683 HWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 683 H~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe 738 (1017)
|+|+..|+.+++++|+.+|++++..+ ..|.||||+|+..++..++.++..
T Consensus 109 h~Aa~~~~~eivklLL~~GAdin~kd------~~G~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 109 YISVLHGCLKCLEILLSYGADINIQT------NDMVTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHhCChhHHHHhcC
Confidence 99999999999999999999999887 689999999999999988866653
No 43
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.59 E-value=2.2e-15 Score=152.01 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhC-----CCCCCccCCCCCcHHHHHHHcCChh---hHHHHHhCCCCCCccC-CCCCc
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEG-----GKGPNVIDDGGQGVVHLAAALGYEW---AMRPIIATGVSPNFRD-ARGRT 680 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~-----Gad~n~~D~~G~TpLH~AA~~G~~~---iVk~LL~~Gadvn~~D-~~G~T 680 (1017)
...++||.++..+-.+.++.. ... +..++.+|..|+||||+|+..|+.+ ++++|+..|+++|.+| ..|+|
T Consensus 16 ~g~tpLh~A~~~g~~~~l~~~-~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T 94 (154)
T PHA02736 16 EGENILHYLCRNGGVTDLLAF-KNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNT 94 (154)
T ss_pred CCCCHHHHHHHhCCHHHHHHH-HHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCc
Confidence 355778888877643222111 111 1123456889999999999999874 6889999999999998 48999
Q ss_pred hhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCC
Q 001754 681 ALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSS 743 (1017)
Q Consensus 681 pLH~Aa~~G~~eiV~~LL~-~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~ 743 (1017)
|||+|+..|+.+++++|+. .|++++..+ ..|.||||+|+..|+.+++++|+..|++.
T Consensus 95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~------~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 95 PLHIAVYTQNYELATWLCNQPGVNMEILN------YAFKTPYYVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred HHHHHHHhCCHHHHHHHHhCCCCCCcccc------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999997 599998887 79999999999999999999999999654
No 44
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.59 E-value=1.2e-15 Score=166.36 Aligned_cols=115 Identities=25% Similarity=0.326 Sum_probs=73.9
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCC-CCCCccCCCCCc------------------------------------
Q 001754 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATG-VSPNFRDARGRT------------------------------------ 680 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~G-advn~~D~~G~T------------------------------------ 680 (1017)
+|..|.+|.|+||||+.+++.++|+.||+.| +++|.++.-|+|
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g 340 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG 340 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence 4557888888888888888888888888876 466666655554
Q ss_pred --hhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchh
Q 001754 681 --ALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNV 758 (1017)
Q Consensus 681 --pLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~T 758 (1017)
+||+|+.+|+.++|+.||.+|||+|++|+ +|.|+|++|+.+||.+|+++||..- ..+..+.|.+ |.|
T Consensus 341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDd------DGSTALMCA~EHGhkEivklLLA~p----~cd~sLtD~D-gST 409 (452)
T KOG0514|consen 341 QTALMLAVSHGRVDMVKALLACGADVNIQDD------DGSTALMCAAEHGHKEIVKLLLAVP----SCDISLTDVD-GST 409 (452)
T ss_pred chhhhhhhhcCcHHHHHHHHHccCCCccccC------CccHHHhhhhhhChHHHHHHHhccC----cccceeecCC-Cch
Confidence 55555666666666666666666666653 6666666666666666666665432 2455555555 556
Q ss_pred HHHHH
Q 001754 759 AAALA 763 (1017)
Q Consensus 759 a~~ia 763 (1017)
|+.++
T Consensus 410 Al~IA 414 (452)
T KOG0514|consen 410 ALSIA 414 (452)
T ss_pred hhhhH
Confidence 55444
No 45
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.58 E-value=6.9e-15 Score=183.38 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=129.6
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhc
Q 001754 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 609 ~~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~ 688 (1017)
+.....+|.+.... ..-..+.++++|++++.++..|.||||.||..|+..+|++||++|+|++.+|+.|+||||.||..
T Consensus 505 ~~~l~~lhla~~~~-~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~ 583 (1143)
T KOG4177|consen 505 KKGLTPLHLAADED-TVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQ 583 (1143)
T ss_pred hhccchhhhhhhhh-hHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHc
Confidence 44455566665554 34456778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH
Q 001754 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 689 G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~ 765 (1017)
|+.+|+.+|+++||++|..+ .+|.|||++|+..|+.+++++|+..|.++...+...++.. |.+|..+...
T Consensus 584 G~~~i~~LLlk~GA~vna~d------~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~-g~~p~~v~e~ 653 (1143)
T KOG4177|consen 584 GHNDIAELLLKHGASVNAAD------LDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRK-GAVPEDVAEE 653 (1143)
T ss_pred ChHHHHHHHHHcCCCCCccc------ccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhc-ccChhhHHHH
Confidence 99999999999999999988 7999999999999999999999999977644446666666 8888776654
No 46
>PHA02917 ankyrin-like protein; Provisional
Probab=99.57 E-value=2.6e-14 Score=175.46 Aligned_cols=48 Identities=10% Similarity=-0.036 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhhH--HHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCC
Q 001754 610 SRDKLIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGY 657 (1017)
Q Consensus 610 ~~d~ll~~al~~~l--~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~ 657 (1017)
...+.||.++.... ..-+++.|++.|++++.+|..|+||||+|+..|+
T Consensus 31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~ 80 (661)
T PHA02917 31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRH 80 (661)
T ss_pred CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 44678887765532 2456777889999999999999999998887665
No 47
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.56 E-value=1.7e-14 Score=160.58 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=102.2
Q ss_pred ccCCCCCcH-HHHHHHcCChhhHHHHHhCCCCCCccC----CCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 001754 640 VIDDGGQGV-VHLAAALGYEWAMRPIIATGVSPNFRD----ARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAF 714 (1017)
Q Consensus 640 ~~D~~G~Tp-LH~AA~~G~~~iVk~LL~~Gadvn~~D----~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d 714 (1017)
.+|..|.|+ ||.|+..|+.+++++|+++|+++|.++ ..|.||||+|+..|+.+++++|+++||+++..++
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~----- 101 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE----- 101 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC-----
Confidence 467777775 566677799999999999999999984 5899999999999999999999999999998653
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH
Q 001754 715 PGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 715 ~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~ 765 (1017)
..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++.+..
T Consensus 102 ~~g~TpLh~Aa~~~~~eivklLL~~G-----Adin~kd~~-G~TpL~~A~~ 146 (300)
T PHA02884 102 EAKITPLYISVLHGCLKCLEILLSYG-----ADINIQTND-MVTPIELALM 146 (300)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHH
Confidence 57999999999999999999999999 788888888 9999988754
No 48
>PHA02917 ankyrin-like protein; Provisional
Probab=99.56 E-value=2.8e-14 Score=175.15 Aligned_cols=159 Identities=8% Similarity=-0.030 Sum_probs=123.5
Q ss_pred chHHHHHHHHHHhh---HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHH
Q 001754 609 NSRDKLIQNLLRNR---LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685 (1017)
Q Consensus 609 ~~~d~ll~~al~~~---l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~A 685 (1017)
....+.|+.++..+ ....+++.|++.+..+|..|. .+++|+|+..|+.++|++|+++|+|+|.+|..|+||||+|
T Consensus 66 ~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~ 143 (661)
T PHA02917 66 WRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENY 143 (661)
T ss_pred CCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHH
Confidence 34457888777654 334567778776554555443 3778889999999999999999999999999999999965
Q ss_pred H--hcCCHHHHHHHHHcCCCCCCCCCCC--------CCCCCCCCHHHHHHh-----------cCcHHHHHHHHHccCCCC
Q 001754 686 S--YFGREETVIMLVKLGAAPGAVEDPT--------PAFPGGQTAADLASS-----------RGHKGIAGYLAEADLSSH 744 (1017)
Q Consensus 686 a--~~G~~eiV~~LL~~GAd~n~~dd~~--------~~d~~G~TPLhlAa~-----------~G~~~iv~lLLe~Ga~~~ 744 (1017)
+ ..|+.++|++|+++||+++..+... .....+.||||+|+. .|+.+++++|++.|
T Consensus 144 ~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G---- 219 (661)
T PHA02917 144 VMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG---- 219 (661)
T ss_pred HHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC----
Confidence 4 5789999999999999998754200 011234699999986 56899999999999
Q ss_pred CcCCccccCccchhHHHHHhH------HHHHHHHHcCC
Q 001754 745 LSSLTVNENGMDNVAAALAAE------KANETAAQIGV 776 (1017)
Q Consensus 745 ~a~l~l~d~~~G~Ta~~ia~~------~~ve~L~e~~a 776 (1017)
++++.++.. |.||++.+.. ++++.|++ ++
T Consensus 220 -advn~~d~~-G~TpLh~A~~~g~~~~eivk~Li~-g~ 254 (661)
T PHA02917 220 -IKPSSIDKN-YCTALQYYIKSSHIDIDIVKLLMK-GI 254 (661)
T ss_pred -CCcccCCCC-CCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence 788888888 9999888753 57888865 54
No 49
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.56 E-value=1.7e-14 Score=131.62 Aligned_cols=85 Identities=31% Similarity=0.401 Sum_probs=78.9
Q ss_pred HHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC
Q 001754 649 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG 728 (1017)
Q Consensus 649 LH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G 728 (1017)
||+||..|+.+++++|++.+.+++. |.||||+||..|+.+++++|++.|++++..+ ..|.||||+|+..|
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQD------KNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS------TTSSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccC------CCCCCHHHHHHHcC
Confidence 7999999999999999999999887 8999999999999999999999999999887 69999999999999
Q ss_pred cHHHHHHHHHccCCC
Q 001754 729 HKGIAGYLAEADLSS 743 (1017)
Q Consensus 729 ~~~iv~lLLe~Ga~~ 743 (1017)
+.+++++|+++|++.
T Consensus 71 ~~~~~~~Ll~~g~~~ 85 (89)
T PF12796_consen 71 NLEIVKLLLEHGADV 85 (89)
T ss_dssp HHHHHHHHHHTTT-T
T ss_pred CHHHHHHHHHcCCCC
Confidence 999999999999443
No 50
>PHA02795 ankyrin-like protein; Provisional
Probab=99.55 E-value=5.6e-14 Score=162.53 Aligned_cols=147 Identities=7% Similarity=-0.154 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHhCCCCCC------ccCCCCCcHHHHHHH--cCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHH
Q 001754 622 RLCEWLVWKIHEGGKGPN------VIDDGGQGVVHLAAA--LGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREET 693 (1017)
Q Consensus 622 ~l~e~Lv~~Lle~Gad~n------~~D~~G~TpLH~AA~--~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ei 693 (1017)
..+..+++.|+.+|+++| .++..++|+||.|+. .|+.++|++|+++|||++.. .+.||||+|+..|+.++
T Consensus 87 ~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eI 164 (437)
T PHA02795 87 ITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSV 164 (437)
T ss_pred cchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHH
Confidence 345677888999999999 788999999999999 89999999999999999985 45899999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHHHH
Q 001754 694 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKANE 769 (1017)
Q Consensus 694 V~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~ve 769 (1017)
+++|+++|++.....+....+..|.||+|.|+..|+.+++++|+++| ++++.++.. |.||++.+ +.+.++
T Consensus 165 Vk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-----ADIN~kD~~-G~TpLh~Aa~~g~~eiVe 238 (437)
T PHA02795 165 VEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-----EDINQLDAG-GRTLLYRAIYAGYIDLVS 238 (437)
T ss_pred HHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-----CCcCcCCCC-CCCHHHHHHHcCCHHHHH
Confidence 99999999854322211111245889999999999999999999999 778888888 99987766 478899
Q ss_pred HHHHcCC
Q 001754 770 TAAQIGV 776 (1017)
Q Consensus 770 ~L~e~~a 776 (1017)
.|++.|+
T Consensus 239 lLL~~GA 245 (437)
T PHA02795 239 WLLENGA 245 (437)
T ss_pred HHHHCCC
Confidence 9999998
No 51
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.55 E-value=1.1e-14 Score=172.12 Aligned_cols=144 Identities=22% Similarity=0.189 Sum_probs=123.0
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHh-CC-CCCCccCCCCCchhhHH
Q 001754 608 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIA-TG-VSPNFRDARGRTALHWA 685 (1017)
Q Consensus 608 ~~~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~-~G-advn~~D~~G~TpLH~A 685 (1017)
++...++||.+++++-.+ .+..|+..|++++.+++++.||||.||..|+..+|+.||+ .| ..+|..|..|.||||+|
T Consensus 270 d~dg~tpLH~a~r~G~~~-svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla 348 (929)
T KOG0510|consen 270 DNDGCTPLHYAARQGGPE-SVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA 348 (929)
T ss_pred cccCCchHHHHHHcCChh-HHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence 456678999999998665 4577899999999999999999999999999999999998 44 46788999999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHH
Q 001754 686 SYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 761 (1017)
Q Consensus 686 a~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ 761 (1017)
+..||..++++||++||...... ..|.+|.||||+|+..|+..+|++|+.+| +++..++.. |.+|.+
T Consensus 349 a~~gH~~v~qlLl~~GA~~~~~~---e~D~dg~TaLH~Aa~~g~~~av~~Li~~G-----a~I~~~n~~-g~SA~~ 415 (929)
T KOG0510|consen 349 AKSGHDRVVQLLLNKGALFLNMS---EADSDGNTALHLAAKYGNTSAVQKLISHG-----ADIGVKNKK-GKSAFD 415 (929)
T ss_pred hhcCHHHHHHHHHhcChhhhccc---ccccCCchhhhHHHHhccHHHHHHHHHcC-----Cceeecccc-cccccc
Confidence 99999999999999999887311 12489999999999999999999999999 555555555 555544
No 52
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=161.58 Aligned_cols=137 Identities=25% Similarity=0.241 Sum_probs=120.6
Q ss_pred HHHHHh-CCCCCCc--------cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHH
Q 001754 628 VWKIHE-GGKGPNV--------IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLV 698 (1017)
Q Consensus 628 v~~Lle-~Gad~n~--------~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL 698 (1017)
++.|++ .++++.. ..-+|-+||..|+..||.++|+.|+.+|++||......-|||--||.-|+.++|++|+
T Consensus 58 VeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLv 137 (615)
T KOG0508|consen 58 VEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLV 137 (615)
T ss_pred HHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHH
Confidence 344444 4555543 3346889999999999999999999999999999888899999999999999999999
Q ss_pred HcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHHHHHHHHc
Q 001754 699 KLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQI 774 (1017)
Q Consensus 699 ~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~ve~L~e~ 774 (1017)
++|+|+++.+ ..|.|.||+||.+||.+|+++|++.| ++++.++.. |.||++.| +.++++.|+..
T Consensus 138 E~gad~~Ian------rhGhTcLmIa~ykGh~~I~qyLle~g-----ADvn~ks~k-GNTALH~caEsG~vdivq~Ll~~ 205 (615)
T KOG0508|consen 138 EHGADPEIAN------RHGHTCLMIACYKGHVDIAQYLLEQG-----ADVNAKSYK-GNTALHDCAESGSVDIVQLLLKH 205 (615)
T ss_pred HcCCCCcccc------cCCCeeEEeeeccCchHHHHHHHHhC-----CCcchhccc-CchHHHhhhhcccHHHHHHHHhC
Confidence 9999999988 79999999999999999999999999 888888888 99987666 47889999988
Q ss_pred CC
Q 001754 775 GV 776 (1017)
Q Consensus 775 ~a 776 (1017)
++
T Consensus 206 ga 207 (615)
T KOG0508|consen 206 GA 207 (615)
T ss_pred Cc
Confidence 87
No 53
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.54 E-value=1.8e-14 Score=145.33 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=101.6
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCCC--C-----CCccCCCCCchhhHHHhcCCH---HHHHHHHHcCCCCCCC
Q 001754 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGV--S-----PNFRDARGRTALHWASYFGRE---ETVIMLVKLGAAPGAV 707 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Ga--d-----vn~~D~~G~TpLH~Aa~~G~~---eiV~~LL~~GAd~n~~ 707 (1017)
++..|..|.||||+||..|+ ++.+++..+. + ++.+|..|+||||+|+..|+. +++++|+++|++++.+
T Consensus 10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK 87 (154)
T ss_pred HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence 45678899999999999998 3444433322 2 345688999999999999987 4689999999999987
Q ss_pred CCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc-cCCCCCcCCccccCccchhHHHHHh----HHHHHHHHHcCC
Q 001754 708 EDPTPAFPGGQTAADLASSRGHKGIAGYLAEA-DLSSHLSSLTVNENGMDNVAAALAA----EKANETAAQIGV 776 (1017)
Q Consensus 708 dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~-Ga~~~~a~l~l~d~~~G~Ta~~ia~----~~~ve~L~e~~a 776 (1017)
++ ..|.||||+|+..|+.+++++|+.. | .+++.++.. |.||++++. .++++.|+..++
T Consensus 88 ~~-----~~g~T~Lh~A~~~~~~~i~~~Ll~~~g-----~d~n~~~~~-g~tpL~~A~~~~~~~i~~~Ll~~ga 150 (154)
T PHA02736 88 ER-----VFGNTPLHIAVYTQNYELATWLCNQPG-----VNMEILNYA-FKTPYYVACERHDAKMMNILRAKGA 150 (154)
T ss_pred CC-----CCCCcHHHHHHHhCCHHHHHHHHhCCC-----CCCccccCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 62 4899999999999999999999984 7 667788887 999887775 466777777765
No 54
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=99.54 E-value=2.3e-14 Score=126.06 Aligned_cols=80 Identities=28% Similarity=0.445 Sum_probs=70.6
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCC-CCCceeeEEEecCCCccc
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-HAAGRVPFYITGSNRLAC 518 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-h~pG~Vp~~Vt~~n~~~c 518 (1017)
.|+.|+|+||+++|||+|+|+|.+| ..++.|+||+..+-.+.|++.+|+|.+|| |.||.|+|.++.....-|
T Consensus 2 ~I~ai~P~eG~~tGGt~VtI~GenF-------~~gl~V~FG~~~~w~e~isp~~i~~~tPP~~~pG~V~Vtl~~~~~~~~ 74 (85)
T cd01175 2 CIKAISPSEGWTTGGATVIIIGDNF-------FDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFC 74 (85)
T ss_pred cccEecCCCCcccCCeEEEEECCCC-------CCCcEEEECCEeEEEEEeccceEEEecCCCCCCceEEEEEEECceeec
Confidence 5999999999999999999999998 44799999999999999999999999999 999999999998776666
Q ss_pred Cc-ceeeee
Q 001754 519 SE-VREFEY 526 (1017)
Q Consensus 519 SE-v~~FEy 526 (1017)
.. .-.|-|
T Consensus 75 ~~~p~~f~y 83 (85)
T cd01175 75 KGTPGRFVY 83 (85)
T ss_pred cCCCceEEe
Confidence 42 344555
No 55
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.53 E-value=4e-14 Score=167.30 Aligned_cols=131 Identities=24% Similarity=0.263 Sum_probs=110.8
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCC
Q 001754 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPG 716 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~-~GAd~n~~dd~~~~d~~ 716 (1017)
+|..|.+|.||||+||..|+.+++..|+..|++++.++.++.||||.||.+|+.++|+-||+ .|... .+..|..
T Consensus 266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rl-----lne~D~~ 340 (929)
T KOG0510|consen 266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRL-----LNESDLH 340 (929)
T ss_pred hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccc-----ccccccc
Confidence 45578999999999999999999999999999999999999999999999999999999998 44322 2334589
Q ss_pred CCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh----HHHHHHHHHcCC
Q 001754 717 GQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA----EKANETAAQIGV 776 (1017)
Q Consensus 717 G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~----~~~ve~L~e~~a 776 (1017)
|.||||+|+..||..++++|+..|+..+. ..-.|.+ |.||++.+. ..+|+.|+..|+
T Consensus 341 g~tpLHlaa~~gH~~v~qlLl~~GA~~~~--~~e~D~d-g~TaLH~Aa~~g~~~av~~Li~~Ga 401 (929)
T KOG0510|consen 341 GMTPLHLAAKSGHDRVVQLLLNKGALFLN--MSEADSD-GNTALHLAAKYGNTSAVQKLISHGA 401 (929)
T ss_pred CCCchhhhhhcCHHHHHHHHHhcChhhhc--ccccccC-CchhhhHHHHhccHHHHHHHHHcCC
Confidence 99999999999999999999999965442 1123666 888777765 677888888887
No 56
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.51 E-value=6.1e-14 Score=160.35 Aligned_cols=153 Identities=25% Similarity=0.256 Sum_probs=130.2
Q ss_pred HHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHH
Q 001754 617 NLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIM 696 (1017)
Q Consensus 617 ~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~ 696 (1017)
.++..++.+- +..|+..|+++|..+.+|.|+||-||.-.+.+||++|+++|++||..|..||||||.|+.+||..++.+
T Consensus 46 ~A~~~~d~~e-v~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~ 124 (527)
T KOG0505|consen 46 EACSRGDLEE-VRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEY 124 (527)
T ss_pred hccccccHHH-HHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHH
Confidence 3444444443 345778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCC-----------------------------------------------------CCCCCCCCCCHHHH
Q 001754 697 LVKLGAAPGAVED-----------------------------------------------------PTPAFPGGQTAADL 723 (1017)
Q Consensus 697 LL~~GAd~n~~dd-----------------------------------------------------~~~~d~~G~TPLhl 723 (1017)
|+.+||++.+++. ...++..|.|+||+
T Consensus 125 li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHv 204 (527)
T KOG0505|consen 125 LIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHV 204 (527)
T ss_pred HHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHH
Confidence 9999998765531 12455669999999
Q ss_pred HHhcCcHHHHHHHHHccCCCCCcCCccccCccchhH----HHHHhHHHHHHHHHcCC
Q 001754 724 ASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVA----AALAAEKANETAAQIGV 776 (1017)
Q Consensus 724 Aa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta----~~ia~~~~ve~L~e~~a 776 (1017)
|+.+|+.++.++|++.| .+++++|.+ |.|| ++.++..+.+.|++.++
T Consensus 205 Aaa~Gy~e~~~lLl~ag-----~~~~~~D~d-gWtPlHAAA~Wg~~~~~elL~~~ga 255 (527)
T KOG0505|consen 205 AAANGYTEVAALLLQAG-----YSVNIKDYD-GWTPLHAAAHWGQEDACELLVEHGA 255 (527)
T ss_pred HHhhhHHHHHHHHHHhc-----cCccccccc-CCCcccHHHHhhhHhHHHHHHHhhc
Confidence 99999999999999999 788888888 8884 56667788888888886
No 57
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.49 E-value=4.2e-14 Score=161.66 Aligned_cols=145 Identities=23% Similarity=0.253 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCC-------------------
Q 001754 611 RDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSP------------------- 671 (1017)
Q Consensus 611 ~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadv------------------- 671 (1017)
.-+.+|.+|... ...++..|++.|++||..|..|+||||.|+..||..++++||.+|+++
T Consensus 73 glTalhq~~id~-~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~ 151 (527)
T KOG0505|consen 73 GLTALHQACIDD-NLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEAT 151 (527)
T ss_pred cchhHHHHHhcc-cHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcch
Confidence 446677777766 456788899999999999999999999999999999999999886442
Q ss_pred ----------------------------------------CccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 001754 672 ----------------------------------------NFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 711 (1017)
Q Consensus 672 ----------------------------------------n~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~ 711 (1017)
+.++..|-|+||.|+.+|..++.++|+.+|.+++++|
T Consensus 152 ~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D--- 228 (527)
T KOG0505|consen 152 LDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKD--- 228 (527)
T ss_pred hHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccc---
Confidence 2333458999999999999999999999999999988
Q ss_pred CCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHH
Q 001754 712 PAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKAN 768 (1017)
Q Consensus 712 ~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v 768 (1017)
.+|+||||.|+..|+.+++++|+++| ++++..... |.+|++++..+.+
T Consensus 229 ---~dgWtPlHAAA~Wg~~~~~elL~~~g-----a~~d~~t~~-g~~p~dv~dee~~ 276 (527)
T KOG0505|consen 229 ---YDGWTPLHAAAHWGQEDACELLVEHG-----ADMDAKTKM-GETPLDVADEEEL 276 (527)
T ss_pred ---ccCCCcccHHHHhhhHhHHHHHHHhh-----cccchhhhc-CCCCccchhhhhH
Confidence 79999999999999999999999999 888888887 9999988877665
No 58
>PHA02730 ankyrin-like protein; Provisional
Probab=99.49 E-value=2.4e-13 Score=164.05 Aligned_cols=144 Identities=13% Similarity=-0.024 Sum_probs=114.7
Q ss_pred HHHHHHHHhCCCCCC-ccCCCCCcHHHHHHHcC---ChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC--CHHHHHHHH
Q 001754 625 EWLVWKIHEGGKGPN-VIDDGGQGVVHLAAALG---YEWAMRPIIATGVSPNFRDARGRTALHWASYFG--REETVIMLV 698 (1017)
Q Consensus 625 e~Lv~~Lle~Gad~n-~~D~~G~TpLH~AA~~G---~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G--~~eiV~~LL 698 (1017)
-..+++.++..+++| .+|..|+||||+|+..| +.++|++||++||+++.+|..|+||||+|+..| +.++|++|+
T Consensus 20 ~~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll 99 (672)
T PHA02730 20 YKKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLI 99 (672)
T ss_pred HHHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHH
Confidence 334556666767888 88999999999999997 589999999999999999999999999999976 799999999
Q ss_pred HcCCCC--CCCCCCCCCCCCCCCHHHHHHh--cCcHHHHHHHHH-ccCCCCCcCCccccC-ccchhHHHHH----hHHHH
Q 001754 699 KLGAAP--GAVEDPTPAFPGGQTAADLASS--RGHKGIAGYLAE-ADLSSHLSSLTVNEN-GMDNVAAALA----AEKAN 768 (1017)
Q Consensus 699 ~~GAd~--n~~dd~~~~d~~G~TPLhlAa~--~G~~~iv~lLLe-~Ga~~~~a~l~l~d~-~~G~Ta~~ia----~~~~v 768 (1017)
++|+++ +..+ ..+.+||+.++. +++.+++++|+. .|+++.. ..+.+++ . |-++..++ ..+++
T Consensus 100 ~~~~~~~~~~~~------~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~-~~~~~~~~~-~~~~~yl~~~~~~~eIv 171 (672)
T PHA02730 100 SSYSNASNELTS------NINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSK-NTNYYIHCL-GLVDIYVTTPNPRPEVL 171 (672)
T ss_pred hcCCCCCccccc------ccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhh-hhhhhcccc-chhhhhHhcCCCchHHH
Confidence 997765 4444 578999999888 999999999997 5534331 1112222 3 66665554 57999
Q ss_pred HHHHHcCC
Q 001754 769 ETAAQIGV 776 (1017)
Q Consensus 769 e~L~e~~a 776 (1017)
+.|++.++
T Consensus 172 klLi~~g~ 179 (672)
T PHA02730 172 LWLLKSEC 179 (672)
T ss_pred HHHHHcCC
Confidence 99999998
No 59
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.46 E-value=2.5e-13 Score=169.60 Aligned_cols=152 Identities=22% Similarity=0.239 Sum_probs=128.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 691 (1017)
-+.|+.+...+. ..++..+++.++..+...+.|.|+||+|+..++..+++.++++|++++.++..|.||||.||.+|+.
T Consensus 475 ~T~Lhlaaq~Gh-~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v 553 (1143)
T KOG4177|consen 475 FTPLHLAAQEGH-TEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNV 553 (1143)
T ss_pred CcchhhhhccCC-chHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCc
Confidence 344555555543 3345667788888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHH
Q 001754 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKA 767 (1017)
Q Consensus 692 eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~ 767 (1017)
++|++||++||++++.+ ..|+||||.|+..|+.+|+.+|+++| +++|..+.. |.||+.++ ....
T Consensus 554 ~~VkfLLe~gAdv~ak~------~~G~TPLH~Aa~~G~~~i~~LLlk~G-----A~vna~d~~-g~TpL~iA~~lg~~~~ 621 (1143)
T KOG4177|consen 554 DLVKFLLEHGADVNAKD------KLGYTPLHQAAQQGHNDIAELLLKHG-----ASVNAADLD-GFTPLHIAVRLGYLSV 621 (1143)
T ss_pred hHHHHhhhCCccccccC------CCCCChhhHHHHcChHHHHHHHHHcC-----CCCCccccc-CcchhHHHHHhcccch
Confidence 99999999999999988 79999999999999999999999999 556666666 67766555 4566
Q ss_pred HHHHHHcCC
Q 001754 768 NETAAQIGV 776 (1017)
Q Consensus 768 ve~L~e~~a 776 (1017)
++.+...++
T Consensus 622 ~k~l~~~~~ 630 (1143)
T KOG4177|consen 622 VKLLKVVTA 630 (1143)
T ss_pred hhHHHhccC
Confidence 777776665
No 60
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.45 E-value=8.9e-13 Score=166.80 Aligned_cols=130 Identities=22% Similarity=0.179 Sum_probs=109.3
Q ss_pred cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCH
Q 001754 641 IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTA 720 (1017)
Q Consensus 641 ~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TP 720 (1017)
.+..+.++||.||..|+.++++.|++.|+++|..|..|+||||+||..|+.+++++|+++|++++.+| ..|.||
T Consensus 521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d------~~G~Tp 594 (823)
T PLN03192 521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD------ANGNTA 594 (823)
T ss_pred CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcC------CCCCCH
Confidence 44467899999999999999999999999999999999999999999999999999999999999887 799999
Q ss_pred HHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHHHHHHcCC-CCCC
Q 001754 721 ADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIGV-QSDG 780 (1017)
Q Consensus 721 LhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~ve~L~e~~a-~~~~ 780 (1017)
||+|+..||.+++++|++.++..+ ....... ...|+..++.+.++.|++.++ .+..
T Consensus 595 L~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~-L~~Aa~~g~~~~v~~Ll~~Gadin~~ 651 (823)
T PLN03192 595 LWNAISAKHHKIFRILYHFASISD---PHAAGDL-LCTAAKRNDLTAMKELLKQGLNVDSE 651 (823)
T ss_pred HHHHHHhCCHHHHHHHHhcCcccC---cccCchH-HHHHHHhCCHHHHHHHHHCCCCCCCC
Confidence 999999999999999998874321 1111111 333566667889999999998 4443
No 61
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.42 E-value=7.8e-13 Score=120.67 Aligned_cols=89 Identities=28% Similarity=0.342 Sum_probs=76.3
Q ss_pred HHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHH
Q 001754 615 IQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 694 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV 694 (1017)
|+.++..+..+ +++.|++.+.+++. |.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++
T Consensus 1 L~~A~~~~~~~-~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 75 (89)
T PF12796_consen 1 LHIAAQNGNLE-ILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV 75 (89)
T ss_dssp HHHHHHTTTHH-HHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred CHHHHHcCCHH-HHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence 45566666544 45667778888876 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCC
Q 001754 695 IMLVKLGAAPGAVE 708 (1017)
Q Consensus 695 ~~LL~~GAd~n~~d 708 (1017)
++|+++|++++.+|
T Consensus 76 ~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 76 KLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHTTT-TTSS-
T ss_pred HHHHHcCCCCCCcC
Confidence 99999999998764
No 62
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.40 E-value=6.1e-13 Score=141.19 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 689 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G 689 (1017)
-.-.+||-+++++ ...+++.|+..|+.+|..+....||||+||.+||.++|..||...+|+|+.+..|.|||||||..|
T Consensus 33 hgfsplhwaakeg-h~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwg 111 (448)
T KOG0195|consen 33 HGFSPLHWAAKEG-HVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWG 111 (448)
T ss_pred cCcchhhhhhhcc-cHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhc
Confidence 3445788889888 456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCC
Q 001754 690 REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSS 743 (1017)
Q Consensus 690 ~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~ 743 (1017)
...+++-|+.+||.+++.+ +.|.|||+.|.-.-..-+.++--+.|-.+
T Consensus 112 ydqiaedli~~ga~v~icn------k~g~tpldkakp~l~~~l~e~aek~gq~~ 159 (448)
T KOG0195|consen 112 YDQIAEDLISCGAAVNICN------KKGMTPLDKAKPMLKNTLLEIAEKHGQSP 159 (448)
T ss_pred HHHHHHHHHhccceeeecc------cCCCCchhhhchHHHHHHHHHHHHhCCCC
Confidence 9999999999999999887 79999999886543334444444556433
No 63
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.39 E-value=7.6e-13 Score=144.75 Aligned_cols=106 Identities=28% Similarity=0.365 Sum_probs=93.3
Q ss_pred HHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc-CCCC
Q 001754 627 LVWKIHEGGKGPNVIDD-GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL-GAAP 704 (1017)
Q Consensus 627 Lv~~Lle~Gad~n~~D~-~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~-GAd~ 704 (1017)
++..|...| |+|.+-. .|+|+|++|+.+|..++|+.||.+|+|||.+|.+|-|+||.||.+||.+||++||.. ++|+
T Consensus 322 vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~ 400 (452)
T KOG0514|consen 322 VVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDI 400 (452)
T ss_pred HHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccc
Confidence 444444444 7888754 699999999999999999999999999999999999999999999999999999976 6777
Q ss_pred CCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc
Q 001754 705 GAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 739 (1017)
Q Consensus 705 n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~ 739 (1017)
.+.| .+|.|+|.+|...||.+|.-+|..+
T Consensus 401 sLtD------~DgSTAl~IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 401 SLTD------VDGSTALSIALEAGHREIAVMLYAH 429 (452)
T ss_pred eeec------CCCchhhhhHHhcCchHHHHHHHHH
Confidence 7766 7999999999999999999888753
No 64
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.39 E-value=9.4e-13 Score=131.31 Aligned_cols=106 Identities=25% Similarity=0.226 Sum_probs=96.5
Q ss_pred cHHHHHHHcCChhhHHHHHhCCCC-CCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001754 647 GVVHLAAALGYEWAMRPIIATGVS-PNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 647 TpLH~AA~~G~~~iVk~LL~~Gad-vn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa 725 (1017)
..+.+|+..+....|+.||+..++ +|.+|.+|+||||-|+++||.+||..|+..||++++++ ..|+||||-||
T Consensus 65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T------~~GWTPLhSAc 138 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKT------NEGWTPLHSAC 138 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccccc------ccCccchhhhh
Confidence 456799999999999999987765 79999999999999999999999999999999999999 69999999999
Q ss_pred hcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh
Q 001754 726 SRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 726 ~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~ 764 (1017)
..++.+|+.+||.+| +++++..+. ..||++++.
T Consensus 139 kWnN~~va~~LLqhg-----aDVnA~t~g-~ltpLhlaa 171 (228)
T KOG0512|consen 139 KWNNFEVAGRLLQHG-----ADVNAQTKG-LLTPLHLAA 171 (228)
T ss_pred cccchhHHHHHHhcc-----Ccccccccc-cchhhHHhh
Confidence 999999999999999 777777776 678888874
No 65
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.39 E-value=2.4e-13 Score=139.81 Aligned_cols=108 Identities=23% Similarity=0.237 Sum_probs=102.4
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCC
Q 001754 626 WLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPG 705 (1017)
Q Consensus 626 ~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n 705 (1017)
-+++.|++.|++++...+...++|.+|+..|+.++|++||.++.|+|..|.+|-|||-+|++.||.+||+.||..||+++
T Consensus 174 ~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t 253 (296)
T KOG0502|consen 174 PVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT 253 (296)
T ss_pred HHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcc
Q 001754 706 AVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 706 ~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~G 740 (1017)
..+ ..|++++++|+..|+. +|+..+++-
T Consensus 254 ~e~------dsGy~~mdlAValGyr-~Vqqvie~h 281 (296)
T KOG0502|consen 254 QED------DSGYWIMDLAVALGYR-IVQQVIEKH 281 (296)
T ss_pred ccc------ccCCcHHHHHHHhhhH-HHHHHHHHH
Confidence 888 4999999999999998 888888876
No 66
>PHA02792 ankyrin-like protein; Provisional
Probab=99.38 E-value=4.8e-12 Score=151.55 Aligned_cols=152 Identities=7% Similarity=-0.035 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHhh-HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCC--CchhhHHH
Q 001754 610 SRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARG--RTALHWAS 686 (1017)
Q Consensus 610 ~~d~ll~~al~~~-l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G--~TpLH~Aa 686 (1017)
..+.+||.-+... ..-.+++.|++.|++++ + ..+..++|.||..|+.++|++|+++||++|.+|..| .||||+|+
T Consensus 305 ~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-r-~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~ 382 (631)
T PHA02792 305 SIQDLLSEYVSYHTVYINVIKCMIDEGATLY-R-FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTL 382 (631)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHCCCccc-c-CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHH
Confidence 4445555544444 23457888999999875 2 235678999999999999999999999999999875 69999988
Q ss_pred hcCCHH---HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH
Q 001754 687 YFGREE---TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 763 (1017)
Q Consensus 687 ~~G~~e---iV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia 763 (1017)
..+..+ ++++|+++||+++.++ ..|.||||+|+..|+.+++++|+++| ++++.++.. |.||++.+
T Consensus 383 ~n~~~~v~~IlklLIs~GADIN~kD------~~G~TPLh~Aa~~~n~eivelLLs~G-----ADIN~kD~~-G~TpL~~A 450 (631)
T PHA02792 383 SIHESDVLSILKLCKPYIDDINKID------KHGRSILYYCIESHSVSLVEWLIDNG-----ADINITTKY-GSTCIGIC 450 (631)
T ss_pred HhccHhHHHHHHHHHhcCCcccccc------ccCcchHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCC-CCCHHHHH
Confidence 776654 5888999999999887 79999999999999999999999999 788888888 99998887
Q ss_pred hH--------------HHHHHHHHcC
Q 001754 764 AE--------------KANETAAQIG 775 (1017)
Q Consensus 764 ~~--------------~~ve~L~e~~ 775 (1017)
.. +.++.++.++
T Consensus 451 ~~~~~~~~~~i~~~~~~il~lLLs~~ 476 (631)
T PHA02792 451 VILAHACIPEIAELYIKILEIILSKL 476 (631)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 53 4466666666
No 67
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.37 E-value=6.5e-12 Score=118.72 Aligned_cols=114 Identities=28% Similarity=0.404 Sum_probs=93.6
Q ss_pred cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCH
Q 001754 641 IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTA 720 (1017)
Q Consensus 641 ~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TP 720 (1017)
+|..|.||||+|+..|+.++++.|+..|.+++..+..|.||||+|+..++.+++++|+..|++++..+ ..|.||
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~~~ 76 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD------KDGNTP 76 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccC------CCCCCH
Confidence 56778899999999999999999999988888888889999999999999999999998888776655 678899
Q ss_pred HHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHH
Q 001754 721 ADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEK 766 (1017)
Q Consensus 721 LhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~ 766 (1017)
+|+|+..++.+++++|+..| .+.+..+.. +.++.+.+...
T Consensus 77 l~~a~~~~~~~~~~~L~~~~-----~~~~~~~~~-~~~~l~~~~~~ 116 (126)
T cd00204 77 LHLAARNGNLDVVKLLLKHG-----ADVNARDKD-GRTPLHLAAKN 116 (126)
T ss_pred HHHHHHcCcHHHHHHHHHcC-----CCCcccCCC-CCCHHHHHHhc
Confidence 99999999999999999888 555556665 77777766433
No 68
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.36 E-value=5.7e-12 Score=158.03 Aligned_cols=147 Identities=19% Similarity=0.110 Sum_probs=105.6
Q ss_pred chHHHHHH-HHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC---ChhhHHHHHhCCCC------CC----cc
Q 001754 609 NSRDKLIQ-NLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG---YEWAMRPIIATGVS------PN----FR 674 (1017)
Q Consensus 609 ~~~d~ll~-~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G---~~~iVk~LL~~Gad------vn----~~ 674 (1017)
....+.|| .++..+ ...+++.|++.|+ .+..|.||||.|+..+ ...++..++..+.+ ++ ..
T Consensus 50 ~~G~t~Lh~~A~~~~-~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~ 124 (743)
T TIGR00870 50 RLGRSALFVAAIENE-NLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE 124 (743)
T ss_pred ccchhHHHHHHHhcC-hHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccc
Confidence 34556677 554444 4556677777776 5667888888887622 22233334433321 11 12
Q ss_pred CCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCC--------CCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCc
Q 001754 675 DARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT--------PAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLS 746 (1017)
Q Consensus 675 D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~--------~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a 746 (1017)
+..|.||||+||.+|+.++|++|+++||+++..+.-. .....|.||||+|+..|+.+++++|++.| +
T Consensus 125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-----a 199 (743)
T TIGR00870 125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP-----A 199 (743)
T ss_pred cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-----c
Confidence 3469999999999999999999999999999764210 11246999999999999999999999999 6
Q ss_pred CCccccCccchhHHHHHhHH
Q 001754 747 SLTVNENGMDNVAAALAAEK 766 (1017)
Q Consensus 747 ~l~l~d~~~G~Ta~~ia~~~ 766 (1017)
+++..|.. |.|+++++...
T Consensus 200 din~~d~~-g~T~Lh~A~~~ 218 (743)
T TIGR00870 200 DILTADSL-GNTLLHLLVME 218 (743)
T ss_pred chhhHhhh-hhHHHHHHHhh
Confidence 78888888 99999887665
No 69
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.35 E-value=3.6e-12 Score=115.21 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=88.9
Q ss_pred HHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhc
Q 001754 648 VVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR 727 (1017)
Q Consensus 648 pLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~ 727 (1017)
-+.|+..+|..+-|+..+..|.|+|..- .|+||||+||-+|..+++++|+..||+++..| +.|-|||--|+..
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kD------KygITPLLsAvwE 77 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKD------KYGITPLLSAVWE 77 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCcc------ccCCcHHHHHHHH
Confidence 3567888888888888888888887654 68888888888888888888888888888777 7888888888888
Q ss_pred CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHHHHH
Q 001754 728 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAA 772 (1017)
Q Consensus 728 G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~ve~L~ 772 (1017)
||.+||++|+..| ++-++...+ |.+.++....+.++.|+
T Consensus 78 GH~~cVklLL~~G-----Adrt~~~Pd-G~~~~eate~edIr~LL 116 (117)
T KOG4214|consen 78 GHRDCVKLLLQNG-----ADRTIHAPD-GTALIEATEEEDIRELL 116 (117)
T ss_pred hhHHHHHHHHHcC-----cccceeCCC-chhHHhhccHHHHHHHh
Confidence 8888888888888 555666666 77777776666665553
No 70
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.34 E-value=3.1e-12 Score=160.39 Aligned_cols=160 Identities=16% Similarity=0.055 Sum_probs=122.9
Q ss_pred CchHHHHHHHHHH--hhHHHHHHHHHHhCCCC------CCc----cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccC
Q 001754 608 PNSRDKLIQNLLR--NRLCEWLVWKIHEGGKG------PNV----IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRD 675 (1017)
Q Consensus 608 ~~~~d~ll~~al~--~~l~e~Lv~~Lle~Gad------~n~----~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D 675 (1017)
....+++||.+++ ....+.++..+...+.+ ++. .+..|.||||+||..|+.++|++||++|++++.++
T Consensus 79 ~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~ 158 (743)
T TIGR00870 79 GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARA 158 (743)
T ss_pred CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence 4567889999887 45566677766665532 111 23469999999999999999999999999999763
Q ss_pred --------------CCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC---------cHHH
Q 001754 676 --------------ARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG---------HKGI 732 (1017)
Q Consensus 676 --------------~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G---------~~~i 732 (1017)
..|.||||+|+..|+.+++++|+++|++++..| ..|+||||+|+..+ ...+
T Consensus 159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d------~~g~T~Lh~A~~~~~~~~~~~~l~~~~ 232 (743)
T TIGR00870 159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD------SLGNTLLHLLVMENEFKAEYEELSCQM 232 (743)
T ss_pred CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh------hhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence 259999999999999999999999999998887 69999999999987 3456
Q ss_pred HHHHHHccCCCCCc--CCccccCccchhHHHHH----hHHHHHHHHHc
Q 001754 733 AGYLAEADLSSHLS--SLTVNENGMDNVAAALA----AEKANETAAQI 774 (1017)
Q Consensus 733 v~lLLe~Ga~~~~a--~l~l~d~~~G~Ta~~ia----~~~~ve~L~e~ 774 (1017)
.+++++.++...-. ..++.|.. |.||++++ +.+.++.+++.
T Consensus 233 ~~~l~~ll~~~~~~~el~~i~N~~-g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 233 YNFALSLLDKLRDSKELEVILNHQ-GLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred HHHHHHHHhccCChHhhhhhcCCC-CCCchhhhhhcCCccHHHHHHHH
Confidence 77787776332211 11566777 88877665 45677777774
No 71
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.33 E-value=2e-12 Score=152.28 Aligned_cols=159 Identities=20% Similarity=0.132 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 691 (1017)
-+.+|.++.++- .-++++|++..+-++.+|..|.+|||+||+.|+.+++++|+.++..+|..+..|.||||.||..||.
T Consensus 50 fTalhha~Lng~-~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~ 128 (854)
T KOG0507|consen 50 FTLLHHAVLNGQ-NQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHL 128 (854)
T ss_pred hhHHHHHHhcCc-hHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcch
Confidence 355666666553 3456667777777777778888888888888888888888888877888888888888888888888
Q ss_pred HHHHHHHHcCCCCCCCCCC-----------------------------------CCCCCCCCCHHHHHHhcCcHHHHHHH
Q 001754 692 ETVIMLVKLGAAPGAVEDP-----------------------------------TPAFPGGQTAADLASSRGHKGIAGYL 736 (1017)
Q Consensus 692 eiV~~LL~~GAd~n~~dd~-----------------------------------~~~d~~G~TPLhlAa~~G~~~iv~lL 736 (1017)
+++.+||.+|+++-++++. .+++..+.+|||+|+.+||.+|++.|
T Consensus 129 dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~l 208 (854)
T KOG0507|consen 129 EVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQAL 208 (854)
T ss_pred HHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHH
Confidence 8888888888887666521 12334455566666666666666666
Q ss_pred HHccCCCCCcCCccccCc--cchhHHHHHhHHHHHHHHHcCC
Q 001754 737 AEADLSSHLSSLTVNENG--MDNVAAALAAEKANETAAQIGV 776 (1017)
Q Consensus 737 Le~Ga~~~~a~l~l~d~~--~G~Ta~~ia~~~~ve~L~e~~a 776 (1017)
++.|. +++...+. ....++..+..++|..|++.+.
T Consensus 209 l~ag~-----din~~t~~gtalheaalcgk~evvr~ll~~gi 245 (854)
T KOG0507|consen 209 LEAGF-----DINYTTEDGTALHEAALCGKAEVVRFLLEIGI 245 (854)
T ss_pred HhcCC-----CcccccccchhhhhHhhcCcchhhhHHHhhcc
Confidence 66662 33322221 0122333444555555555553
No 72
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.31 E-value=1.3e-11 Score=128.49 Aligned_cols=106 Identities=30% Similarity=0.438 Sum_probs=99.3
Q ss_pred HHHHhCCCCCCccCCCCCcHHHHHHHcCC-----hhhHHHHHhCCC---CCCccCCCCCchhhHHHhcCCHHHHHHHHHc
Q 001754 629 WKIHEGGKGPNVIDDGGQGVVHLAAALGY-----EWAMRPIIATGV---SPNFRDARGRTALHWASYFGREETVIMLVKL 700 (1017)
Q Consensus 629 ~~Lle~Gad~n~~D~~G~TpLH~AA~~G~-----~~iVk~LL~~Ga---dvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~ 700 (1017)
..++..|++++.+|..|.||||+|+..|+ .++++.||+.|+ +.+.+|..|+||||+|+..|+.+++.+|++.
T Consensus 90 ~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 169 (235)
T COG0666 90 KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169 (235)
T ss_pred HHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc
Confidence 66888999999999999999999999999 999999999999 5666699999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcc
Q 001754 701 GAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 701 GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~G 740 (1017)
|++++..+ ..|.||+++|+..|+..++..|+..+
T Consensus 170 ~~~~~~~~------~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 170 GADPNSRN------SYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCCCcccc------cCCCcchhhhcccchHHHHHHHHhcC
Confidence 99998886 69999999999999999999999976
No 73
>PHA02792 ankyrin-like protein; Provisional
Probab=99.29 E-value=8.2e-12 Score=149.62 Aligned_cols=110 Identities=15% Similarity=-0.044 Sum_probs=96.1
Q ss_pred HHHHHHHhCCCCCCccCCCC--CcHHHHHHHcCChh---hHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc
Q 001754 626 WLVWKIHEGGKGPNVIDDGG--QGVVHLAAALGYEW---AMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL 700 (1017)
Q Consensus 626 ~Lv~~Lle~Gad~n~~D~~G--~TpLH~AA~~G~~~---iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~ 700 (1017)
-+++.|+++|+++|.+|..| .||||+|+..+... ++++|+.+|+++|.+|..|+||||+|+..++.+++++|+++
T Consensus 353 eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~ 432 (631)
T PHA02792 353 KVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDN 432 (631)
T ss_pred HHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence 46788999999999999875 69999987766543 57889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHh----------cCcHHHHHHHHHccC
Q 001754 701 GAAPGAVEDPTPAFPGGQTAADLASS----------RGHKGIAGYLAEADL 741 (1017)
Q Consensus 701 GAd~n~~dd~~~~d~~G~TPLhlAa~----------~G~~~iv~lLLe~Ga 741 (1017)
|++++..+ ..|.||||+|+. ..+.+++++|+++|.
T Consensus 433 GADIN~kD------~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p 477 (631)
T PHA02792 433 GADINITT------KYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP 477 (631)
T ss_pred CCCCCCcC------CCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence 99999887 699999999976 233567889998883
No 74
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.29 E-value=4.1e-11 Score=113.25 Aligned_cols=119 Identities=29% Similarity=0.352 Sum_probs=107.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 691 (1017)
.+.++.+++.+.. .++..|++.|.+.+..+..|.||||+|+..+..+++++|+..|++++..+..|.||+|+|+..++.
T Consensus 8 ~t~l~~a~~~~~~-~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~ 86 (126)
T cd00204 8 RTPLHLAASNGHL-EVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNL 86 (126)
T ss_pred CCHHHHHHHcCcH-HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcH
Confidence 4677888877755 456678889999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHH
Q 001754 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLA 737 (1017)
Q Consensus 692 eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLL 737 (1017)
+++++|+..|.+++..+ ..|.||+++|...++.+++++|+
T Consensus 87 ~~~~~L~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 87 DVVKLLLKHGADVNARD------KDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHHHHcCCCCcccC------CCCCCHHHHHHhcCCHHHHHHhC
Confidence 99999999998877766 68999999999999999999884
No 75
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.28 E-value=4.4e-12 Score=149.43 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=112.0
Q ss_pred CCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 001754 637 GPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPG 716 (1017)
Q Consensus 637 d~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~ 716 (1017)
.+|..|.+|.|+||.||.+|+..++++|+++.+-++..|..|.+|||+|++.|+.++|++|+.++..+|+.+ ..
T Consensus 41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~------~e 114 (854)
T KOG0507|consen 41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN------IE 114 (854)
T ss_pred cccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc------cc
Confidence 467788999999999999999999999999999999999999999999999999999999999998888877 69
Q ss_pred CCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHH----HHHhHHHHHHHHHc
Q 001754 717 GQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAA----ALAAEKANETAAQI 774 (1017)
Q Consensus 717 G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~----~ia~~~~ve~L~e~ 774 (1017)
|.||||+|+.+||.+++.+|+.+| ++.-+.++. +.|++ .++...+++.|+..
T Consensus 115 ~~tplhlaaqhgh~dvv~~Ll~~~-----adp~i~nns-~~t~ldlA~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 115 NETPLHLAAQHGHLEVVFYLLKKN-----ADPFIRNNS-KETVLDLASRFGRAEVVQMLLQK 170 (854)
T ss_pred CcCccchhhhhcchHHHHHHHhcC-----CCccccCcc-cccHHHHHHHhhhhHHHHHHhhh
Confidence 999999999999999999999999 666667776 77755 45556777777665
No 76
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=5.9e-12 Score=142.43 Aligned_cols=109 Identities=28% Similarity=0.238 Sum_probs=96.4
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCC
Q 001754 627 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGA 706 (1017)
Q Consensus 627 Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~ 706 (1017)
|++.++..-.|+...++.|.|+||-|+..||.+||++||+.|+|||+.|.+||||||+||.+++..+++.|++.|+.+-+
T Consensus 565 lVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfA 644 (752)
T KOG0515|consen 565 LVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFA 644 (752)
T ss_pred HHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEe
Confidence 34445555568888999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCHHHHHH--hcCcHHHHHHHHHcc
Q 001754 707 VEDPTPAFPGGQTAADLAS--SRGHKGIAGYLAEAD 740 (1017)
Q Consensus 707 ~dd~~~~d~~G~TPLhlAa--~~G~~~iv~lLLe~G 740 (1017)
.+- .++.||..-+- ..|+.+|.+||....
T Consensus 645 sTl-----SDmeTa~eKCee~eeGY~~CsqyL~~vq 675 (752)
T KOG0515|consen 645 STL-----SDMETAAEKCEEMEEGYDQCSQYLYGVQ 675 (752)
T ss_pred eec-----ccccchhhhcchhhhhHHHHHHHHHHHH
Confidence 764 68999988764 358999999998644
No 77
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.26 E-value=1.9e-11 Score=130.17 Aligned_cols=97 Identities=25% Similarity=0.266 Sum_probs=90.7
Q ss_pred CCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCc-cCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 001754 636 KGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF-RDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAF 714 (1017)
Q Consensus 636 ad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~-~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d 714 (1017)
-.+|.+|..|+|+|..|+..|+.++|++||+.|+|||. ++..++||||+||..|+.++.++|++.|+.++.++
T Consensus 36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vN------ 109 (396)
T KOG1710|consen 36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVN------ 109 (396)
T ss_pred hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCcccccc------
Confidence 35899999999999999999999999999999999996 56679999999999999999999999999999988
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHH
Q 001754 715 PGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 715 ~~G~TPLhlAa~~G~~~iv~lLLe 738 (1017)
.-|+|+..+|+.-||.+||..+-.
T Consensus 110 svgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 110 SVGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred chhhhHHHHHHHhcchHHHHHHhc
Confidence 799999999999999999987753
No 78
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.23 E-value=1.1e-10 Score=121.35 Aligned_cols=120 Identities=27% Similarity=0.292 Sum_probs=104.2
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCC-----HHHHHHHHHcCC--CC-CCCCC
Q 001754 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGR-----EETVIMLVKLGA--AP-GAVED 709 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~-----~eiV~~LL~~GA--d~-n~~dd 709 (1017)
....+..+.+++|.++..+...++.+|+..|++++.+|..|.||||+|+..|+ .+++++|++.|+ +. +..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~- 144 (235)
T COG0666 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD- 144 (235)
T ss_pred cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC-
Confidence 34567778999999999999999999999999999999999999999999999 999999999999 33 3334
Q ss_pred CCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHH
Q 001754 710 PTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANE 769 (1017)
Q Consensus 710 ~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~ve 769 (1017)
..|.||||+|+..|+.+++++|++.| ++++..+.. |.|++..+......
T Consensus 145 -----~~g~tpl~~A~~~~~~~~~~~ll~~~-----~~~~~~~~~-g~t~l~~a~~~~~~ 193 (235)
T COG0666 145 -----EDGNTPLHWAALNGDADIVELLLEAG-----ADPNSRNSY-GVTALDPAAKNGRI 193 (235)
T ss_pred -----CCCCchhHHHHHcCchHHHHHHHhcC-----CCCcccccC-CCcchhhhcccchH
Confidence 79999999999999999999999999 666666676 88877776544433
No 79
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.21 E-value=1e-11 Score=104.34 Aligned_cols=50 Identities=34% Similarity=0.518 Sum_probs=20.2
Q ss_pred CCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHH
Q 001754 636 KGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685 (1017)
Q Consensus 636 ad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~A 685 (1017)
+++|..|..|.||||+||..|+.++|++||..|++++.+|..|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 55555555555566655555555555555555555555555555555554
No 80
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.19 E-value=5e-11 Score=147.28 Aligned_cols=86 Identities=31% Similarity=0.475 Sum_probs=60.6
Q ss_pred HHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhc
Q 001754 648 VVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR 727 (1017)
Q Consensus 648 pLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~ 727 (1017)
.||.||..|+.+++++|+..|+++|.+|..|+||||+||..|+.++|++|+++|++++..+ ..|.||||+|+..
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d------~~G~TpLh~A~~~ 158 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD------KDGKTPLELAEEN 158 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHC
Confidence 4666677777777777777777777777777777777777777777777777777766665 5677777777777
Q ss_pred CcHHHHHHHHHc
Q 001754 728 GHKGIAGYLAEA 739 (1017)
Q Consensus 728 G~~~iv~lLLe~ 739 (1017)
|+.+++++|+++
T Consensus 159 g~~~iv~~Ll~~ 170 (664)
T PTZ00322 159 GFREVVQLLSRH 170 (664)
T ss_pred CcHHHHHHHHhC
Confidence 777777777766
No 81
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.19 E-value=3.1e-11 Score=100.43 Aligned_cols=54 Identities=31% Similarity=0.449 Sum_probs=34.1
Q ss_pred CCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHH
Q 001754 645 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLV 698 (1017)
Q Consensus 645 G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL 698 (1017)
|+||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 567777777777777777777777777777777777777777777777777664
No 82
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.18 E-value=4.2e-11 Score=108.41 Aligned_cols=86 Identities=27% Similarity=0.327 Sum_probs=76.7
Q ss_pred HhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 001754 632 HEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 711 (1017)
Q Consensus 632 le~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~ 711 (1017)
+..|.++|..- .|++|||+||-.|...++++|+..|++++.+|+.|-|||.-|++.||.+||++||..||+-....
T Consensus 22 v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~--- 97 (117)
T KOG4214|consen 22 VNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHA--- 97 (117)
T ss_pred HHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeC---
Confidence 34466777543 89999999999999999999999999999999999999999999999999999999999987776
Q ss_pred CCCCCCCCHHHHH
Q 001754 712 PAFPGGQTAADLA 724 (1017)
Q Consensus 712 ~~d~~G~TPLhlA 724 (1017)
++|.+.+..+
T Consensus 98 ---PdG~~~~eat 107 (117)
T KOG4214|consen 98 ---PDGTALIEAT 107 (117)
T ss_pred ---CCchhHHhhc
Confidence 7888877654
No 83
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.18 E-value=1.7e-11 Score=103.04 Aligned_cols=55 Identities=38% Similarity=0.663 Sum_probs=33.3
Q ss_pred HHhCC-CCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001754 664 IIATG-VSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 724 (1017)
Q Consensus 664 LL~~G-advn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlA 724 (1017)
||++| +++|.+|..|.||||+||..|+.++|++|++.|++++.++ ..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d------~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKD------KDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---------TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCc------CCCCCHHHhC
Confidence 67888 9999999999999999999999999999999999999988 7999999997
No 84
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.17 E-value=1.6e-10 Score=138.35 Aligned_cols=156 Identities=20% Similarity=0.163 Sum_probs=122.6
Q ss_pred chHHHHHHHHHH--hhHHHHHHHHHHhCCC----CCCccC-CCCCcHHHHHHHcCChhhHHHHHhCCCCCCcc-------
Q 001754 609 NSRDKLIQNLLR--NRLCEWLVWKIHEGGK----GPNVID-DGGQGVVHLAAALGYEWAMRPIIATGVSPNFR------- 674 (1017)
Q Consensus 609 ~~~d~ll~~al~--~~l~e~Lv~~Lle~Ga----d~n~~D-~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~------- 674 (1017)
...+++||.++- ...+..++..|++--- ++-.-+ ..|+||||+|+.+.+.++|++||+.||||+++
T Consensus 141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~ 220 (782)
T KOG3676|consen 141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFC 220 (782)
T ss_pred chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccC
Confidence 456777887765 3445455555554321 222222 36999999999999999999999999999874
Q ss_pred --CC--------------CCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001754 675 --DA--------------RGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 675 --D~--------------~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe 738 (1017)
|. .|..||-+||..+.++|+++|+++|||++++| ..|+|.||..+..-..++-.++++
T Consensus 221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqD------S~GNTVLH~lVi~~~~~My~~~L~ 294 (782)
T KOG3676|consen 221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQD------SNGNTVLHMLVIHFVTEMYDLALE 294 (782)
T ss_pred cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccc------cCCChHHHHHHHHHHHHHHHHHHh
Confidence 11 37889999999999999999999999999988 799999999999988899999999
Q ss_pred ccCCCCCcCCccccCccchhHHHHHh----HHHHHHHHHc
Q 001754 739 ADLSSHLSSLTVNENGMDNVAAALAA----EKANETAAQI 774 (1017)
Q Consensus 739 ~Ga~~~~a~l~l~d~~~G~Ta~~ia~----~~~ve~L~e~ 774 (1017)
.|++ +...+.|++ |-||+.+|+ .++.+.++++
T Consensus 295 ~ga~---~l~~v~N~q-gLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 295 LGAN---ALEHVRNNQ-GLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred cCCC---ccccccccC-CCChHHHHHHhhhHHHHHHHHHh
Confidence 9965 447788888 889766654 5666677777
No 85
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=99.15 E-value=7.6e-10 Score=135.61 Aligned_cols=268 Identities=18% Similarity=0.188 Sum_probs=165.1
Q ss_pred ceEEEEEccCCCCCCCCCCCceEEEeCCeecceee----eeCCeEEeecCC-------CCCceeeEE--------EecCC
Q 001754 454 ETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEV----LTDNVIRCQAPS-------HAAGRVPFY--------ITGSN 514 (1017)
Q Consensus 454 gtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~----~~~gvLrC~~Pp-------h~pG~Vp~~--------Vt~~n 514 (1017)
.-+|+|+-.. +.|.-.=|++.|-..- ...+.+.|.+-. -.+|+.-=| |..
T Consensus 402 ~qlf~I~DfS---------P~Wsy~~ggvKVlV~G~~~~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~h~~G~V~l-- 470 (975)
T KOG0520|consen 402 EQLFTITDFS---------PEWSYLDGGVKVLVTGFPQDETRSNYSCMFGEQRVPAELIQEGVLRCYAPPHEPGVVNL-- 470 (975)
T ss_pred cceeeeeccC---------cccccCCCCcEEEEecCccccCCCceEEEeCCccccHHHhhcceeeeecCccCCCeEEE--
Confidence 6677777653 3677777777654332 234579998762 334543221 221
Q ss_pred CcccC--cceeeeeecCCCCCCCCccccCCCchHHHHHHHHHHhhccCCccccccccccchhhhhhHHHHhhcccCCCCc
Q 001754 515 RLACS--EVREFEYREKPSKAGYPVASKIAPEDEVRLQTRLAKFLYLDPERKWFDCTIEDCNKCKLKNTIYSMRGDSEKD 592 (1017)
Q Consensus 515 ~~~cS--Ev~~FEyr~~~~~~~~~~~~~~~~~~e~~Lq~Rl~~LL~~~~~~~~~~~~~~~~~k~~l~~~i~~l~~~~~~~ 592 (1017)
++.|+ ....||||.-..........+..++++..++|.+...|..-... ......+...
T Consensus 471 ~V~c~~~~~~~se~ref~~~~~~~~~~d~~s~~d~~~~~sl~~rl~~~~~r--------------~~~~~~s~~~----- 531 (975)
T KOG0520|consen 471 QVTCRISGLACSEVREFAYLVQPSQQIDKLSWEDFLFQMSLLHRLETMLNR--------------KQSILSSKPS----- 531 (975)
T ss_pred EEEecccceeeeeehheeecccCcccccccccccchhhhHHHHHHHHHHHH--------------hHhHhhccCC-----
Confidence 44666 77889999876555544445556689999999999887521110 0111111100
Q ss_pred cccccccccccccCCCchHHHHHHHHHHhhHHHHHHHHHHhC--CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhC-CC
Q 001754 593 WGRVDESPMAIEGDCPNSRDKLIQNLLRNRLCEWLVWKIHEG--GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIAT-GV 669 (1017)
Q Consensus 593 w~~l~e~l~~~~~~~~~~~d~ll~~al~~~l~e~Lv~~Lle~--Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~-Ga 669 (1017)
-+.. .+. ... . |..-+..-+.+|.-+ ++.. ........-.|+|.||+++..++.|+++.+++- |.
T Consensus 532 ~~n~-------~~~-~~~-~--l~skv~~l~~~~~~r-~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~ 599 (975)
T KOG0520|consen 532 TENT-------SDA-ESG-N--LASKVVHLLNEWAYR-LLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGS 599 (975)
T ss_pred cccc-------ccc-cch-h--HHHHHHHHHHHHHHH-HHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhccccc
Confidence 0000 000 000 0 111111111222211 1111 112334556789999999999999999999985 77
Q ss_pred CCCccCCCCCchhhHHHhcCCHHHHHHHH-HcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCC-cC
Q 001754 670 SPNFRDARGRTALHWASYFGREETVIMLV-KLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL-SS 747 (1017)
Q Consensus 670 dvn~~D~~G~TpLH~Aa~~G~~eiV~~LL-~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~-a~ 747 (1017)
..+..|..|.--+|+ |..++.+++-+|+ -.|..++++| ..|+||||+|+..|+..++..|++.|++..+ .+
T Consensus 600 ~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D------~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~td 672 (975)
T KOG0520|consen 600 GDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRD------RNGWTPLHWAAFRGREKLVASLIELGADPGAVTD 672 (975)
T ss_pred CchhhcccCCChhhH-hhhcCCceeEEEEeeccccccccc------CCCCcccchHhhcCHHHHHHHHHHhccccccccC
Confidence 777778888888888 5556666666665 4578888888 6999999999999999999999999987774 35
Q ss_pred CccccCccchhHHHHHhHHHHHHH
Q 001754 748 LTVNENGMDNVAAALAAEKANETA 771 (1017)
Q Consensus 748 l~l~d~~~G~Ta~~ia~~~~ve~L 771 (1017)
++-.... |.|++.++...+..-+
T Consensus 673 ps~~~p~-g~ta~~la~s~g~~gi 695 (975)
T KOG0520|consen 673 PSPETPG-GKTAADLARANGHKGI 695 (975)
T ss_pred CCCCCCC-CCchhhhhhcccccch
Confidence 5444444 8888887765444433
No 86
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.09 E-value=1.8e-10 Score=95.82 Aligned_cols=54 Identities=37% Similarity=0.580 Sum_probs=46.3
Q ss_pred CCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHH
Q 001754 678 GRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLA 737 (1017)
Q Consensus 678 G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLL 737 (1017)
|+||||+||..|+.+++++|++.|++++.+| ..|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d------~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQD------EDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-------TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHccCHHHHHHHC
Confidence 7899999999999999999999999999987 69999999999999999999996
No 87
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=99.08 E-value=5.3e-10 Score=100.82 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=74.6
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeeccee-eeeCCeEEeecCCCCCceeeEEEecCCCccc
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAE-VLTDNVIRCQAPSHAAGRVPFYITGSNRLAC 518 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae-~~~~gvLrC~~Pph~pG~Vp~~Vt~~n~~~c 518 (1017)
.|++|+|.|++..||++|+|.|.+|.. ....+.|.||+...++. ++.++.|.|..|++.+|.+++.|..++...+
T Consensus 2 ~I~si~P~~~~~~gg~~ItI~G~~f~~----~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~~~~~~v~v~~~~~~~~ 77 (85)
T PF01833_consen 2 VITSISPNSGSISGGTNITITGSNFGS----NSSNISVKIGGSQCTVITVVSSTQITCTSPALPSGNVNVSVTVNGQQIY 77 (85)
T ss_dssp EEEEEESSEEETTCTSEEEEEEESSES----SSTTEEEEETTEEEEEEGEEETTEEEEE--SCSSEEEEEEEEETTSEEE
T ss_pred EEEEEECCeEecCCCEEEEEEEEeecc----cCCceEEEECCEeeeEEEEECCcEEEEEECCCCCccEEEEEEECCcCeE
Confidence 699999999999999999999999922 25689999999988888 9999999999999999999999999887888
Q ss_pred Ccceeeee
Q 001754 519 SEVREFEY 526 (1017)
Q Consensus 519 SEv~~FEy 526 (1017)
++...|+|
T Consensus 78 ~~~~~F~Y 85 (85)
T PF01833_consen 78 SNNTSFTY 85 (85)
T ss_dssp EEEEEEEE
T ss_pred ECCeeeEC
Confidence 99999998
No 88
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.06 E-value=4.6e-10 Score=138.83 Aligned_cols=104 Identities=26% Similarity=0.299 Sum_probs=88.3
Q ss_pred HHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHH
Q 001754 615 IQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 694 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV 694 (1017)
|+.++..+..+ .++.|++.|+++|.+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++
T Consensus 86 L~~aa~~G~~~-~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv 164 (664)
T PTZ00322 86 LCQLAASGDAV-GARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV 164 (664)
T ss_pred HHHHHHcCCHH-HHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence 33444444443 46788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-------CCCCCCCCCCCCCCCCCCCHHHHHH
Q 001754 695 IMLVKL-------GAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 695 ~~LL~~-------GAd~n~~dd~~~~d~~G~TPLhlAa 725 (1017)
++|+.+ |++++..+ ..|.+|+..+.
T Consensus 165 ~~Ll~~~~~~~~~ga~~~~~~------~~g~~~~~~~~ 196 (664)
T PTZ00322 165 QLLSRHSQCHFELGANAKPDS------FTGKPPSLEDS 196 (664)
T ss_pred HHHHhCCCcccccCCCCCccc------cCCCCccchhh
Confidence 999998 66655544 67777766544
No 89
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=4.3e-10 Score=127.67 Aligned_cols=105 Identities=27% Similarity=0.218 Sum_probs=90.9
Q ss_pred HHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC
Q 001754 649 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG 728 (1017)
Q Consensus 649 LH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G 728 (1017)
|.-|+..|-.++|+-.+..--|+...+..|.||||-|+..||.+||++||+.|+++|+.| .+||||||+|+.++
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~D------SdGWTPLHCAASCN 627 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAAD------SDGWTPLHCAASCN 627 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCcc------CCCCchhhhhhhcC
Confidence 445888899999999999888999999999999999999999999999999999999988 79999999999999
Q ss_pred cHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh
Q 001754 729 HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 729 ~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~ 764 (1017)
+..+++.|++.|+.+.. .++. + +.||++.|.
T Consensus 628 nv~~ckqLVe~GaavfA--sTlS--D-meTa~eKCe 658 (752)
T KOG0515|consen 628 NVPMCKQLVESGAAVFA--STLS--D-METAAEKCE 658 (752)
T ss_pred chHHHHHHHhccceEEe--eecc--c-ccchhhhcc
Confidence 99999999999954322 2232 2 557777764
No 90
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.03 E-value=7.4e-10 Score=118.24 Aligned_cols=108 Identities=23% Similarity=0.216 Sum_probs=97.5
Q ss_pred CcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001754 646 QGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 646 ~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa 725 (1017)
..||.-+...|..+....||..--++|.+|..|.|+|..|+..|+.++|++||+.|||+|...+ ..+.||||+|+
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh-----g~~YTpLmFAA 87 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH-----GTLYTPLMFAA 87 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc-----cccccHHHHHH
Confidence 5788889999999999999988777999999999999999999999999999999999998764 78999999999
Q ss_pred hcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh
Q 001754 726 SRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 726 ~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~ 764 (1017)
..|+.++.++|++.| +.+.+.++. |+||+.++.
T Consensus 88 LSGn~dvcrllldaG-----a~~~~vNsv-grTAaqmAA 120 (396)
T KOG1710|consen 88 LSGNQDVCRLLLDAG-----ARMYLVNSV-GRTAAQMAA 120 (396)
T ss_pred HcCCchHHHHHHhcc-----Cccccccch-hhhHHHHHH
Confidence 999999999999999 667777776 999776664
No 91
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.01 E-value=9.7e-10 Score=131.68 Aligned_cols=123 Identities=26% Similarity=0.272 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCcc--------CC---------------CCCcHHHHHHHcCChhhHHHHHh
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVI--------DD---------------GGQGVVHLAAALGYEWAMRPIIA 666 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~--------D~---------------~G~TpLH~AA~~G~~~iVk~LL~ 666 (1017)
...+.||.++.+...+ ++..|++.|+|++.+ +. .|..||-+||..+..+++++|++
T Consensus 183 ~GqSaLHiAIv~~~~~-~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~ 261 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAE-LVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA 261 (782)
T ss_pred cCcchHHHHHHhccHH-HHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence 4567899999988766 567899999999862 21 26789999999999999999999
Q ss_pred CCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc
Q 001754 667 TGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA--PGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 739 (1017)
Q Consensus 667 ~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd--~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~ 739 (1017)
+|||+|++|.+|+|.||..+..-..++-.+++++|++ ...++ ..|.|||-+|+..|..++.+.+++.
T Consensus 262 ~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N------~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 262 HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRN------NQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccc------cCCCChHHHHHHhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 55554 7999999999999999999999998
No 92
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.91 E-value=8.1e-09 Score=94.40 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=69.1
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCC-CCceeeEEEecCCCccc
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSH-AAGRVPFYITGSNRLAC 518 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph-~pG~Vp~~Vt~~n~~~c 518 (1017)
.|+.|+|..||..|||+|+|.|.+|.. .....|+||+.+.....+.+..|.|.+|++ .+|.++|.|..++...
T Consensus 2 ~I~~i~P~~Gp~~GGT~vtI~G~~~~~-----~~~~~V~ig~~~C~~~~~~~~~i~C~tp~~~~~~~~~v~V~~d~~~~- 75 (85)
T cd01179 2 SITSLSPSYGPQSGGTRLTITGKHLNA-----GSSVRVTVGGQPCKILSVSSSQIVCLTPPSASPGEAPVKVLIDGARR- 75 (85)
T ss_pred eeeEEcCCCCCCCCCEEEEEEEECCCC-----CCeEEEEECCeEeeEEEecCCEEEEECCCCCCCceEEEEEEECCccc-
Confidence 699999999999999999999999954 345899999997666667888999999995 4688999998877633
Q ss_pred Ccceeeeeec
Q 001754 519 SEVREFEYRE 528 (1017)
Q Consensus 519 SEv~~FEyr~ 528 (1017)
+....|+|.+
T Consensus 76 ~~~~~F~Y~~ 85 (85)
T cd01179 76 LAPLVFTYTE 85 (85)
T ss_pred CCCccEEEeC
Confidence 4456899864
No 93
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.89 E-value=1.8e-09 Score=130.36 Aligned_cols=160 Identities=18% Similarity=0.052 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCcc-CCCCCchhhHHHhc
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFR-DARGRTALHWASYF 688 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~-D~~G~TpLH~Aa~~ 688 (1017)
..++.|-.+|..+ ++.++.+|+.+|+++..+|+.|.+||.+|+-.||..+|+.|+.+.++++.+ |..+.|+|-+||..
T Consensus 756 n~~t~LT~acagg-h~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg 834 (2131)
T KOG4369|consen 756 NIKTNLTSACAGG-HREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG 834 (2131)
T ss_pred cccccccccccCc-cHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence 3445556666655 566788899999999999999999999999999999999999999999875 77899999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHH
Q 001754 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKAN 768 (1017)
Q Consensus 689 G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v 768 (1017)
|+.++|++||.+|++-..++ -...|||.+|...|+.+|+.+|+..|..++-..-.-.+-.+...|...++..++
T Consensus 835 gr~~vvelLl~~gankehrn------vsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at 908 (2131)
T KOG4369|consen 835 GRTRVVELLLNAGANKEHRN------VSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAAT 908 (2131)
T ss_pred CcchHHHHHHHhhccccccc------hhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHH
Confidence 99999999999999877766 678999999999999999999999994433221111111112335566777888
Q ss_pred HHHHHcCC
Q 001754 769 ETAAQIGV 776 (1017)
Q Consensus 769 e~L~e~~a 776 (1017)
..|++.+.
T Consensus 909 ~~ll~~gs 916 (2131)
T KOG4369|consen 909 LSLLQPGS 916 (2131)
T ss_pred HHHhcccc
Confidence 88887775
No 94
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=98.88 E-value=1.1e-08 Score=93.26 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=68.7
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEe-CCeecceeeeeCCeEEeecCCCCC---ceeeEEEecCCC
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMF-GEIEVPAEVLTDNVIRCQAPSHAA---GRVPFYITGSNR 515 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~F-Gd~~vpae~~~~gvLrC~~Pph~p---G~Vp~~Vt~~n~ 515 (1017)
.|+.|+|.+++.+|||+|+|.|.+|.. ...+.|+| |+.......+.+..|.|.+|++.. |.|.|.|...+.
T Consensus 2 ~I~~i~P~~g~~~GGt~itI~G~~f~~-----~~~~~v~~~g~~~c~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~ 76 (89)
T cd00102 2 VITSISPSSGPVSGGTEVTITGSNFGS-----GSNLRVTFGGGVPCSVLSVSSTAIVCTTPPYANPGPGPVEVTVDRGNG 76 (89)
T ss_pred EEeEEECCcCCCCCCeEEEEEEECCCC-----CCcEEEEEeCCCeEEEEEecCCEEEEECCCCCCCCcEEEEEEEeCCCC
Confidence 699999999999999999999999954 22699999 898777667789999999999544 888888876543
Q ss_pred cccCcceeeeee
Q 001754 516 LACSEVREFEYR 527 (1017)
Q Consensus 516 ~~cSEv~~FEyr 527 (1017)
..++....|+|.
T Consensus 77 ~~~~~~~~F~Y~ 88 (89)
T cd00102 77 GITSSPLTFTYV 88 (89)
T ss_pred cccCCCccEEee
Confidence 456777889986
No 95
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.67 E-value=6.4e-08 Score=109.75 Aligned_cols=95 Identities=29% Similarity=0.383 Sum_probs=86.6
Q ss_pred CCccCCCCCcH------HHHHHHcCChhhHHHHHhCCCCCCccCCC-CCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCC
Q 001754 638 PNVIDDGGQGV------VHLAAALGYEWAMRPIIATGVSPNFRDAR-GRTALHWASYFGREETVIMLVKLGAAPGAVEDP 710 (1017)
Q Consensus 638 ~n~~D~~G~Tp------LH~AA~~G~~~iVk~LL~~Gadvn~~D~~-G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~ 710 (1017)
+-.+|++|-|. ||-.++.|+.+.+--||..||++|+.+.. |.||||.||..|...-+++|+-+|||+++.|
T Consensus 120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d-- 197 (669)
T KOG0818|consen 120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQD-- 197 (669)
T ss_pred CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCC--
Confidence 34567777664 89999999999999999999999998765 9999999999999999999999999999988
Q ss_pred CCCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001754 711 TPAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 711 ~~~d~~G~TPLhlAa~~G~~~iv~lLLe 738 (1017)
..|.||+.+|...||.++++.|++
T Consensus 198 ----~~GmtP~~~AR~~gH~~laeRl~e 221 (669)
T KOG0818|consen 198 ----SSGMTPVDYARQGGHHELAERLVE 221 (669)
T ss_pred ----CCCCcHHHHHHhcCchHHHHHHHH
Confidence 799999999999999999998887
No 96
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.60 E-value=3.8e-08 Score=119.23 Aligned_cols=144 Identities=19% Similarity=0.140 Sum_probs=103.1
Q ss_pred HHHHHHHhCCCCCCccC--CCCCcHHHHHHHcCChhhHHHHHhCCCCCCccC-CCCCchhhHHHhcCCHHHHHHHHHcCC
Q 001754 626 WLVWKIHEGGKGPNVID--DGGQGVVHLAAALGYEWAMRPIIATGVSPNFRD-ARGRTALHWASYFGREETVIMLVKLGA 702 (1017)
Q Consensus 626 ~Lv~~Lle~Gad~n~~D--~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D-~~G~TpLH~Aa~~G~~eiV~~LL~~GA 702 (1017)
.+++.|+..|..||.+. +.|-.||++|++.||...++.||+.|.|+|..- .+-+|+|-+|+..|+.++|.+||.+.+
T Consensus 871 ~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~a 950 (2131)
T KOG4369|consen 871 KIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQA 950 (2131)
T ss_pred HHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhh
Confidence 35666667776666543 356677777777777777777777777776642 345677777777777777777777777
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcC-CccccCccchhHHHHHhHHHHHHHHHcCC
Q 001754 703 APGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSS-LTVNENGMDNVAAALAAEKANETAAQIGV 776 (1017)
Q Consensus 703 d~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~-l~l~d~~~G~Ta~~ia~~~~ve~L~e~~a 776 (1017)
++..+. +.|.|||+-++..|..++-.+|+.+|++.+.+- .+..|.- .-.+++-++.+.+..|+.+.+
T Consensus 951 nvehRa------ktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dta-lti~a~kGh~kfv~~lln~~a 1018 (2131)
T KOG4369|consen 951 NVEHRA------KTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTA-LTIPANKGHTKFVPKLLNGDA 1018 (2131)
T ss_pred hhhhhc------ccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCcc-ceeecCCCchhhhHHhhCCcc
Confidence 776666 789999999999999999999999998887753 2333332 333677788888888887665
No 97
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.60 E-value=2.9e-07 Score=84.66 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=63.6
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCC-CCCceeeEEEecCCCc--
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-HAAGRVPFYITGSNRL-- 516 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-h~pG~Vp~~Vt~~n~~-- 516 (1017)
.|+.|+|..|+..|||.|+|.|.+|... .....|.||+.+.....+.+..|.|.+|+ ..+|..++.|..++..
T Consensus 2 ~I~~i~P~~g~~~Ggt~vtI~G~~f~~~----~~~~~V~ig~~~C~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~~ 77 (90)
T cd00603 2 VITSISPSSGPLSGGTRLTITGSNLGSG----SPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGEGPVEVTVDGANVS 77 (90)
T ss_pred eEEEEcCCCCCCCCCeEEEEEEECCCCC----CceEEEEECCEECcEEecCCCEEEEECCCCCCCCcEeEEEEECCcccc
Confidence 6999999999999999999999999652 24799999998666666778899999999 4442344444444443
Q ss_pred -ccCcceeeeee
Q 001754 517 -ACSEVREFEYR 527 (1017)
Q Consensus 517 -~cSEv~~FEyr 527 (1017)
..+....|+|.
T Consensus 78 ~~~~~~~~F~Y~ 89 (90)
T cd00603 78 ARVLSNTTFTYV 89 (90)
T ss_pred ccccCCcceEEe
Confidence 24555668875
No 98
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.55 E-value=3e-08 Score=117.68 Aligned_cols=83 Identities=24% Similarity=0.371 Sum_probs=78.6
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCC-CCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 001754 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDAR-GRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPG 716 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~-G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~ 716 (1017)
.|.+|..|+|+||+|+..|...++++||.+|++++.+|.. |+||||-|..+|+.+|+-+||.+|+...+.| .+
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~D------ke 118 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKD------KE 118 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEec------cc
Confidence 5779999999999999999999999999999999999986 9999999999999999999999999988887 79
Q ss_pred CCCHHHHHHh
Q 001754 717 GQTAADLASS 726 (1017)
Q Consensus 717 G~TPLhlAa~ 726 (1017)
|..||++-++
T Consensus 119 glsplq~~~r 128 (1267)
T KOG0783|consen 119 GLSPLQFLSR 128 (1267)
T ss_pred CCCHHHHHhh
Confidence 9999998766
No 99
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=98.53 E-value=3.2e-07 Score=84.28 Aligned_cols=84 Identities=25% Similarity=0.293 Sum_probs=66.4
Q ss_pred eEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeee--eCCeEEeecCC-C-CCceeeE-EEecC
Q 001754 439 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVL--TDNVIRCQAPS-H-AAGRVPF-YITGS 513 (1017)
Q Consensus 439 f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~--~~gvLrC~~Pp-h-~pG~Vp~-~Vt~~ 513 (1017)
..|+.|+|.+|+..|||+|+|+|.+|.. .....|.|+...+++.+. .+..|.|.+|+ + .++.+++ .|...
T Consensus 2 P~I~~i~P~~g~~~GGt~iti~G~nf~~-----~~~~~~~~~~~~~~c~~~~~~~~~i~C~tp~~~~~~~~~~v~~v~~~ 76 (90)
T smart00429 2 PVITRISPTSGPVSGGTEITLCGKNLDS-----ISVVFVEVGVGEAPCTFLPSSSTAIVCKTPPYHTIPGSVPVREVGLR 76 (90)
T ss_pred CEEEEEccCcCcCCCCeEEEEeeecCCc-----ceEEEEEEEeCCEEeEEeCCcceEEEEECCCCCCCCCCcCeEEEEEe
Confidence 4799999999999999999999999955 557788888766777776 46789999999 4 6788888 77766
Q ss_pred CCcccCcceeeeee
Q 001754 514 NRLACSEVREFEYR 527 (1017)
Q Consensus 514 n~~~cSEv~~FEyr 527 (1017)
+...-++...|+|.
T Consensus 77 ~~~~~~~~~~f~y~ 90 (90)
T smart00429 77 NGGVPSSPQPFTYV 90 (90)
T ss_pred CCCccCcccCeEEC
Confidence 65544444567763
No 100
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.52 E-value=4.6e-07 Score=84.51 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=67.0
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe-ecce--eeeeCCeEEeecCCCCC--ceeeEEEecCC
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPA--EVLTDNVIRCQAPSHAA--GRVPFYITGSN 514 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~-~vpa--e~~~~gvLrC~~Pph~p--G~Vp~~Vt~~n 514 (1017)
.|+.|+|..||..|||+|+|.|.+|.... +.....|++|+. +.+. .......|.|.+||+.+ +.++|.|..++
T Consensus 2 ~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~--~~~~~~V~ig~~~C~i~~~~~~~~~~I~C~t~~~~~~~~~~~V~V~v~~ 79 (94)
T cd01180 2 VITEFFPLSGPLEGGTRLTICGSNLGLRK--NDVRHGVRVGGVPCNPEPPEYSSSEKIVCTTGPAGNPVFNGPVEVTVGH 79 (94)
T ss_pred eeEEEeCCCCCCCCCEEEEEEEEcCCCCc--ccceeEEEECCEECcccCCCcCcCCEEEEECCCCCCCCcceEEEEEECC
Confidence 69999999999999999999999996532 124678999998 3332 25567789999999654 78888888766
Q ss_pred Cc-ccCcceeeeeec
Q 001754 515 RL-ACSEVREFEYRE 528 (1017)
Q Consensus 515 ~~-~cSEv~~FEyr~ 528 (1017)
.. .++.-..|+|.+
T Consensus 80 ~~~~~~~~~~F~Y~~ 94 (94)
T cd01180 80 GSFRTESSEGFSFVD 94 (94)
T ss_pred ceecccccCceEEeC
Confidence 53 456667898864
No 101
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.46 E-value=6.2e-07 Score=103.60 Aligned_cols=96 Identities=27% Similarity=0.332 Sum_probs=76.8
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHhCCCC--CC--ccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhh
Q 001754 608 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKG--PN--VIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALH 683 (1017)
Q Consensus 608 ~~~~d~ll~~al~~~l~e~Lv~~Lle~Gad--~n--~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH 683 (1017)
.....+++.....+.+...+ +|+.+|.. +| .-+.+|+|+||+||..|+..+.++||.+|+|+..+|.+|+|||.
T Consensus 622 ~~lgqqLl~A~~~~Dl~t~~--lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~ 699 (749)
T KOG0705|consen 622 EPLGQQLLRAVAAEDLQTAI--LLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALF 699 (749)
T ss_pred CchHHHHHHHHHHHHHHHHH--HHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhh
Confidence 34556666665555544333 35666643 33 34667899999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCC
Q 001754 684 WASYFGREETVIMLVKLGAAPG 705 (1017)
Q Consensus 684 ~Aa~~G~~eiV~~LL~~GAd~n 705 (1017)
||-..|..+|+.+|+.+|+...
T Consensus 700 yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 700 YARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hHhhcccHHHHHHHHHcCCCcc
Confidence 9999999999999999998653
No 102
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.44 E-value=1.8e-07 Score=105.79 Aligned_cols=94 Identities=30% Similarity=0.274 Sum_probs=85.3
Q ss_pred cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCCCCCCC
Q 001754 641 IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL-GAAPGAVEDPTPAFPGGQT 719 (1017)
Q Consensus 641 ~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~-GAd~n~~dd~~~~d~~G~T 719 (1017)
++.++...+.+||..|....++-+.-.|.|++.+|.+.+|+||.||..|+.+++++||+. +.+++.+| .+|+|
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD------Rw~rt 575 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD------RWGRT 575 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh------ccCCC
Confidence 345667889999999999999999999999999999999999999999999999999964 66766665 89999
Q ss_pred HHHHHHhcCcHHHHHHHHHcc
Q 001754 720 AADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 720 PLhlAa~~G~~~iv~lLLe~G 740 (1017)
||+-|..-+|.+++++|-+.-
T Consensus 576 PlDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 576 PLDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred cchHhHhcCcHHHHHHHHHHh
Confidence 999999999999999999865
No 103
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.35 E-value=1.1e-06 Score=100.95 Aligned_cols=123 Identities=24% Similarity=0.332 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCC--CCccCCCCCchhhHHHh
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVS--PNFRDARGRTALHWASY 687 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad--vn~~D~~G~TpLH~Aa~ 687 (1017)
..+.+|+.++...++.. ......|.++-.++.+..|.||+|+..|+-++|++||++|-. +++.|..|.|+||-||.
T Consensus 866 iseeil~av~~~D~~kl--qE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~ 943 (1004)
T KOG0782|consen 866 ISEEILRAVLSSDLMKL--QETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC 943 (1004)
T ss_pred ccHHHHHHHHhccHHHH--HHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence 44556777776665542 224457888888999999999999999999999999999864 57788999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcc
Q 001754 688 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 688 ~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~G 740 (1017)
.++-.++.+|++.||..-..| ..|.||-.-|-..|..+++.||-.+.
T Consensus 944 ~~~r~vc~~lvdagasl~ktd------~kg~tp~eraqqa~d~dlaayle~rq 990 (1004)
T KOG0782|consen 944 QRNRAVCQLLVDAGASLRKTD------SKGKTPQERAQQAGDPDLAAYLESRQ 990 (1004)
T ss_pred hcchHHHHHHHhcchhheecc------cCCCChHHHHHhcCCchHHHHHhhhh
Confidence 999999999999999987666 79999999999999999999998654
No 104
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.34 E-value=1.7e-06 Score=81.49 Aligned_cols=72 Identities=22% Similarity=0.482 Sum_probs=57.5
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe-ecceeeeeCCeEEeecCCCCC-------ceeeEEEe
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPAEVLTDNVIRCQAPSHAA-------GRVPFYIT 511 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~-~vpae~~~~gvLrC~~Pph~p-------G~Vp~~Vt 511 (1017)
+|++|+|.|+|.+|||.|+|+|.+|..- ....+.+.||+. .+++.+..+..+.|..|+... +..|+.+.
T Consensus 2 ~I~~i~P~~g~~SGGt~itV~G~~Lds~---q~p~~~V~~~~~~~~~C~v~s~~~i~C~tP~~~~~~~~~~~~~~~~~~~ 78 (99)
T cd01181 2 TITRIEPEWSFLSGGTPITVTGTNLNTV---QEPRIRVKYGGVEKTSCKVRNSTLMTCPAPSLALLNRSPEPGERPVEFG 78 (99)
T ss_pred EEEEeccCCCccCCCEEEEEEeeccCcc---cccEEEEEECCceeccceeCCCCEEEeCCCCCcccccccCCCCcCeEEE
Confidence 6999999999999999999999999552 355899999995 457888888899999998332 55555555
Q ss_pred cCC
Q 001754 512 GSN 514 (1017)
Q Consensus 512 ~~n 514 (1017)
.+.
T Consensus 79 fd~ 81 (99)
T cd01181 79 LDG 81 (99)
T ss_pred Eec
Confidence 433
No 105
>PF13606 Ank_3: Ankyrin repeat
Probab=98.31 E-value=6.4e-07 Score=65.69 Aligned_cols=29 Identities=38% Similarity=0.444 Sum_probs=19.7
Q ss_pred CCCchhhHHHhcCCHHHHHHHHHcCCCCC
Q 001754 677 RGRTALHWASYFGREETVIMLVKLGAAPG 705 (1017)
Q Consensus 677 ~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n 705 (1017)
+|+||||+||..|+.++|++||++|+++|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 36677777777777777777777766665
No 106
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.30 E-value=3.2e-07 Score=109.24 Aligned_cols=83 Identities=24% Similarity=0.249 Sum_probs=77.5
Q ss_pred CCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCcc
Q 001754 671 PNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTV 750 (1017)
Q Consensus 671 vn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l 750 (1017)
.|.+|..|+|+||+|+..|...++++||++|++++.+|. ..|+||||-|+..||.+|+-+||.+| ..+.+
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~-----ESG~taLHRaiyyG~idca~lLL~~g-----~SL~i 114 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDE-----ESGYTALHRAIYYGNIDCASLLLSKG-----RSLRI 114 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccc-----cccchHhhHhhhhchHHHHHHHHhcC-----CceEE
Confidence 678999999999999999999999999999999999985 78999999999999999999999999 89999
Q ss_pred ccCccchhHHHHHh
Q 001754 751 NENGMDNVAAALAA 764 (1017)
Q Consensus 751 ~d~~~G~Ta~~ia~ 764 (1017)
+|++ |..|+..-.
T Consensus 115 ~Dke-glsplq~~~ 127 (1267)
T KOG0783|consen 115 KDKE-GLSPLQFLS 127 (1267)
T ss_pred eccc-CCCHHHHHh
Confidence 9999 998877643
No 107
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.27 E-value=1.1e-05 Score=100.00 Aligned_cols=124 Identities=21% Similarity=0.242 Sum_probs=89.4
Q ss_pred hhhchHHHHH--hHHHHHHHHHHHHHHhhhhhhhcc--cCCchhHHHHHHHHhccccccccchh------------h---
Q 001754 788 LRGSLAAVRK--SAHAAALIQQAFRVRSFRHRQSIQ--SSDDVSEVSVDLVALGSLNKVSKMIH------------F--- 848 (1017)
Q Consensus 788 lkdsL~AvR~--A~~AA~rIQ~aFR~~s~Rkr~L~~--~~~~~~e~~~~ila~q~~~r~~~~~~------------~--- 848 (1017)
.-.-|..+|. ++.+.+..+..|. .|++.|.. ...+....|..++.. ....+++.+. +
T Consensus 592 ~~GvLetiRiS~~g~P~r~~~~Ef~---~r~~~L~~~~~~~~~~~~~~~il~~-~~~~~yq~g~tkif~r~gq~~~le~~ 667 (862)
T KOG0160|consen 592 CCGVLETIRISCAGFPTRWTFIEFV---NRYGILMPNDSASDDLSLCKVILEK-LGLELYQIGKTKIFLRAGQIAVLEAR 667 (862)
T ss_pred ccceehhheeccccCCccccHHHHH---HHHhhcCcchhcccchHHHHHHHHH-hchhceeeeeeeeeeccchhHHHHHH
Confidence 3445666654 6677777788777 78888876 112236777777763 2111111111 1
Q ss_pred -HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001754 849 -EDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRG 916 (1017)
Q Consensus 849 -~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwr~kr 916 (1017)
...+..+++.||+.+|||..||.|+++|+.++.||+.+||..+|+... ..+++..+|+.++.|..++
T Consensus 668 R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~ 735 (862)
T KOG0160|consen 668 RSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRR 735 (862)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHH
Confidence 114678888899999999999999999999999999999999999555 6778888999888876554
No 108
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.24 E-value=3.4e-05 Score=95.60 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCchhHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001754 799 AHAAALIQQAFRVRSFRHRQSIQSSDDVSEVSVDLVALGSLNKVSKMIHFEDYLHFAAIKIQQKYRGWKGRKDFLKIRNH 878 (1017)
Q Consensus 799 ~~AA~rIQ~aFR~~s~Rkr~L~~~~~~~~e~~~~ila~q~~~r~~~~~~~~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~ 878 (1017)
..++..||..+|++..|+++ .....+++.+|+..||..+++ ...+..||+.||+.+|+|..||.|+.++.+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f--------~~~r~~~~~~Q~~~rG~~~r~-~~~~~~aai~~q~~~r~~~~r~~y~~~~~~ 743 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKF--------LQLRSAVIIIQAYSRGVLARR-ETEREAAAIGIQKECRSYLNRRRYRALIPA 743 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44667899999999999998 455566666677778888876 334889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001754 879 IVKLQAHVRGHQVRKQ 894 (1017)
Q Consensus 879 aV~IQa~~Rg~qaRK~ 894 (1017)
++.||+.+||+.+|++
T Consensus 744 ~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 744 SITIQSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999999983
No 109
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.22 E-value=1.5e-06 Score=65.00 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=21.2
Q ss_pred CCCchhhHHHhcCCHHHHHHHHHcCCCCCCCC
Q 001754 677 RGRTALHWASYFGREETVIMLVKLGAAPGAVE 708 (1017)
Q Consensus 677 ~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~d 708 (1017)
+|+||||+|+..|+.+++++|+++|++++.++
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 36666666666666666666666666666654
No 110
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=98.21 E-value=7.8e-06 Score=74.18 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=67.1
Q ss_pred eEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCCCCceeeEEEecCCCccc
Q 001754 439 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLAC 518 (1017)
Q Consensus 439 f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph~pG~Vp~~Vt~~n~~~c 518 (1017)
..|..|+|.-|.. |++|+|.|.+|.+ ..-.++||+.+.+...|+|..|.|.+|.+.+|..++.|.-.++..
T Consensus 3 P~I~~i~P~~g~~--G~~VtI~G~gFg~------~~~~V~~g~~~a~v~s~sdt~I~~~vP~~~aG~~~V~V~~~~G~~- 73 (81)
T cd02849 3 PLIGHVGPMMGKA--GNTVTISGEGFGS------APGTVYFGTTAATVISWSDTRIVVTVPNVPAGNYDVTVKTADGAT- 73 (81)
T ss_pred CEEeeEcCCCCCC--CCEEEEEEECCCC------CCcEEEECCEEeEEEEECCCEEEEEeCCCCCceEEEEEEeCCCcc-
Confidence 4799999999986 8899999999954 246799999998999999999999999999999999999765554
Q ss_pred Ccceeeee
Q 001754 519 SEVREFEY 526 (1017)
Q Consensus 519 SEv~~FEy 526 (1017)
|....|+|
T Consensus 74 Sn~~~f~~ 81 (81)
T cd02849 74 SNGYNFEV 81 (81)
T ss_pred cCcEeeEC
Confidence 55555664
No 111
>PF13606 Ank_3: Ankyrin repeat
Probab=98.13 E-value=2.4e-06 Score=62.69 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHcCChhhHHHHHhCCCCCCc
Q 001754 644 GGQGVVHLAAALGYEWAMRPIIATGVSPNF 673 (1017)
Q Consensus 644 ~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~ 673 (1017)
+|+||||+||..|+.++|++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999984
No 112
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.13 E-value=3e-06 Score=63.29 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHcCChhhHHHHHhCCCCCCccCC
Q 001754 644 GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDA 676 (1017)
Q Consensus 644 ~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~ 676 (1017)
+|.||||+||..|+.+++++||++|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999874
No 113
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.12 E-value=7.7e-06 Score=93.31 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhc
Q 001754 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDD-GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 610 ~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~-~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~ 688 (1017)
.-..-||..+..+..+..+. |+..|+++|..+. .|.||||.||..|..--+++|+-+|||+++.|.+|.||+.+|-..
T Consensus 132 ~LsrQLhasvRt~nlet~LR-ll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~ 210 (669)
T KOG0818|consen 132 DLSKQLHSSVRTGNLETCLR-LLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQG 210 (669)
T ss_pred HHHHHHHHHhhcccHHHHHH-HHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhc
Confidence 34455777788887787776 6778999999775 699999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHH
Q 001754 689 GREETVIMLVK 699 (1017)
Q Consensus 689 G~~eiV~~LL~ 699 (1017)
||.++..-|++
T Consensus 211 gH~~laeRl~e 221 (669)
T KOG0818|consen 211 GHHELAERLVE 221 (669)
T ss_pred CchHHHHHHHH
Confidence 99988877765
No 114
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=98.12 E-value=3.2e-05 Score=91.66 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=83.3
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhcccC------CchhHHHHHHHHhccccccccc-----------hh-h------HH
Q 001754 795 VRKSAHAAALIQQAFRVRSFRHRQSIQSS------DDVSEVSVDLVALGSLNKVSKM-----------IH-F------ED 850 (1017)
Q Consensus 795 vR~A~~AA~rIQ~aFR~~s~Rkr~L~~~~------~~~~e~~~~ila~q~~~r~~~~-----------~~-~------~~ 850 (1017)
+|.|+.|-+..+..|. .||+.+.++. .+.++.+..++.. +...+.-+ +. | +.
T Consensus 618 VrrAgfahRq~Y~~FL---~RYKmi~~~TWPn~~~g~dkd~v~vL~e~-~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~ 693 (1001)
T KOG0164|consen 618 VRRAGFAHRQPYERFL---LRYKMICESTWPNWRGGSDKDGVKVLLEH-LGLAGDVAFGRTKIFIRSPRTLFALEEQRAE 693 (1001)
T ss_pred hhhcccccccchHHHH---HHHHhhCcccCCCCCCCCchhHHHHHHHH-hccchhhhcCceeEEEecchhHhhHHHHHHH
Confidence 4889999999999999 9999987743 2225566666653 11111110 00 1 22
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 001754 851 YLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFR 923 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwr~kr~~Lr~~~ 923 (1017)
++-.-++.|||.||||.+|.+|+++|++++.|+ +||.+ ++.+.+..|+..++.|++.|.--+.++
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~-------K~ks~v~el~~~~rg~k~~r~ygk~~~ 758 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRY-------KLKSYVQELQRRFRGAKQMRDYGKSIR 758 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-------HHHHHHHHHHHHHHhhhhccccCCCCC
Confidence 566789999999999999999999999999999 88844 455677778888888887665444443
No 115
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.09 E-value=6.5e-06 Score=95.40 Aligned_cols=90 Identities=23% Similarity=0.189 Sum_probs=77.1
Q ss_pred HHHHHHcCChhhHHHHHhCCCCC----CccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001754 649 VHLAAALGYEWAMRPIIATGVSP----NFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 724 (1017)
Q Consensus 649 LH~AA~~G~~~iVk~LL~~Gadv----n~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlA 724 (1017)
|..|+.......+-+||.+|... ..-+.+|+||||+||..|++.+..+|+=+|+|+-++| ..|+|||.||
T Consensus 628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rd------a~g~t~l~ya 701 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARD------AHGRTALFYA 701 (749)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecc------cCCchhhhhH
Confidence 45566667777888899988543 2356678999999999999999999999999999888 7999999999
Q ss_pred HhcCcHHHHHHHHHccCCCC
Q 001754 725 SSRGHKGIAGYLAEADLSSH 744 (1017)
Q Consensus 725 a~~G~~~iv~lLLe~Ga~~~ 744 (1017)
...|.-+|+.+|+.+|+...
T Consensus 702 r~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 702 RQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hhcccHHHHHHHHHcCCCcc
Confidence 99999999999999996544
No 116
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.04 E-value=8.3e-06 Score=94.40 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=55.8
Q ss_pred CCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc
Q 001754 634 GGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL 700 (1017)
Q Consensus 634 ~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~ 700 (1017)
.+..++..|..|.||||+|+..|+...++.|+.+|+++..+|..||+|||-|+..|+..++..++.+
T Consensus 44 ~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 44 VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 4556777888888888888888888888888888888888888888888888888888888777754
No 117
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.04 E-value=8e-06 Score=94.52 Aligned_cols=88 Identities=23% Similarity=0.213 Sum_probs=75.4
Q ss_pred cHHHHHHHcCChhhHHHH--HhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001754 647 GVVHLAAALGYEWAMRPI--IATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 724 (1017)
Q Consensus 647 TpLH~AA~~G~~~iVk~L--L~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlA 724 (1017)
-|||+++.....+-+..+ .+.+..++.+|..|.||||+|+..|+...++.|+.+||++..++ ..|++|||-|
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN------~~gWs~L~EA 95 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKN------NEGWSPLHEA 95 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccc------cccccHHHHH
Confidence 459999988766655443 34467889999999999999999999999999999999998887 7999999999
Q ss_pred HhcCcHHHHHHHHHcc
Q 001754 725 SSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 725 a~~G~~~iv~lLLe~G 740 (1017)
+..|+..++..++.+-
T Consensus 96 v~~g~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 96 VSTGNEQIITEVLRHL 111 (560)
T ss_pred HHcCCHHHHHHHHHHh
Confidence 9999998877776654
No 118
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=97.98 E-value=0.00016 Score=92.31 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=66.9
Q ss_pred chHHH--HHhHHHHHHHHHHHHHHhhhhhhhcccC---C------chhHHHHHHHHh-ccccccccchh---h-------
Q 001754 791 SLAAV--RKSAHAAALIQQAFRVRSFRHRQSIQSS---D------DVSEVSVDLVAL-GSLNKVSKMIH---F------- 848 (1017)
Q Consensus 791 sL~Av--R~A~~AA~rIQ~aFR~~s~Rkr~L~~~~---~------~~~e~~~~ila~-q~~~r~~~~~~---~------- 848 (1017)
-|..| +.|++|.+..+..|+ .||+.|.... . +...++..|+.- ..-...++-+. |
T Consensus 658 VlE~IRIsraGFP~R~~f~EFv---~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~ 734 (1463)
T COG5022 658 VLETIRISRAGFPSRWTFDEFV---QRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLA 734 (1463)
T ss_pred hhhheeeccccCchhhhHHHHH---HHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHH
Confidence 34444 578999999999999 9999987622 1 225666666642 00001111111 1
Q ss_pred ------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 849 ------EDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQ 894 (1017)
Q Consensus 849 ------~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~ 894 (1017)
+...+..|+.||++|||+..||+|+...+.+..||...+|.+.|+.
T Consensus 735 ~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~ 786 (1463)
T COG5022 735 ALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRL 786 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 2257889999999999999999999887766666665555555543
No 119
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=97.88 E-value=8.2e-05 Score=67.55 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=67.1
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCCCCceeeEEEecCCCcccC
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLACS 519 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph~pG~Vp~~Vt~~n~~~cS 519 (1017)
.|..|.|.-|. -|+.|+|.|..|.+. .-.++||+.+.+...|++..|.|.+|.+.+|..++.|...++.. |
T Consensus 2 ~I~~i~P~~g~--pG~~VtI~G~gFg~~------~~~V~~g~~~a~v~s~sdt~I~~~VP~~~~g~~~i~V~~~~G~~-S 72 (81)
T cd00604 2 LIGSVGPVMGK--PGNTVTISGEGFGST------GGTVYFGGTAAEVLSWSDTSIVVEVPRVAPGNYNISVTTVDGVT-S 72 (81)
T ss_pred eEeeEcCCCCC--CCCEEEEEEECCCCC------ccEEEECCEEEEEEEECCCEEEEEeCCCCCCceEEEEEECCCcc-c
Confidence 68999999985 789999999999552 35799999999998999999999999999999999998755554 6
Q ss_pred cceeeeee
Q 001754 520 EVREFEYR 527 (1017)
Q Consensus 520 Ev~~FEyr 527 (1017)
....|+|.
T Consensus 73 n~~~f~~l 80 (81)
T cd00604 73 NGYNFEVL 80 (81)
T ss_pred CcEeEEEc
Confidence 66668874
No 120
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.84 E-value=4.3e-05 Score=78.40 Aligned_cols=65 Identities=35% Similarity=0.342 Sum_probs=36.9
Q ss_pred CCCCccCCCCCchhhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc
Q 001754 669 VSPNFRDARGRTALHWASYFGREETVIMLVKLG-AAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 739 (1017)
Q Consensus 669 advn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~G-Ad~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~ 739 (1017)
.++|.+|..||||||.|+..|..+.|.+|+.+| +.+...+ ..|.+++.+|-..|+.+++..|-+.
T Consensus 3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d------~ssldaaqlaek~g~~~fvh~lfe~ 68 (223)
T KOG2384|consen 3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD------ESSLDAAQLAEKGGAQAFVHSLFEN 68 (223)
T ss_pred CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc------cccchHHHHHHhcChHHHHHHHHHH
Confidence 455555555555555555555555555555555 4554444 4555555555555555555555554
No 121
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.83 E-value=1.4e-05 Score=99.65 Aligned_cols=98 Identities=30% Similarity=0.394 Sum_probs=86.6
Q ss_pred CCCCCc--cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 001754 635 GKGPNV--IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTP 712 (1017)
Q Consensus 635 Gad~n~--~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~ 712 (1017)
++++|. .-..|.|+||.|+..|..-++++|++.|+++|.+|..|.||||.+...|+...+..|++.|+++++.+
T Consensus 644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~---- 719 (785)
T KOG0521|consen 644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD---- 719 (785)
T ss_pred hhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC----
Confidence 444443 23467999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001754 713 AFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 713 ~d~~G~TPLhlAa~~G~~~iv~lLLe 738 (1017)
..|.+||++|....+.+++-+|.-
T Consensus 720 --~~~~~~l~~a~~~~~~d~~~l~~l 743 (785)
T KOG0521|consen 720 --PDGKLPLDIAMEAANADIVLLLRL 743 (785)
T ss_pred --ccCcchhhHHhhhccccHHHHHhh
Confidence 799999999988777777766654
No 122
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.76 E-value=2e-05 Score=89.78 Aligned_cols=84 Identities=25% Similarity=0.238 Sum_probs=71.8
Q ss_pred HHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHh-CCCCCCccCCCCCchhhHHHhcCCHHHHHH
Q 001754 618 LLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIA-TGVSPNFRDARGRTALHWASYFGREETVIM 696 (1017)
Q Consensus 618 al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~-~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~ 696 (1017)
+.+.+....+ +.+.-.|.|++.+|.+.+|+||.||..|+.+++++||. .+++++.+|.+|+|||.-|..++|.+++++
T Consensus 513 aa~~GD~~al-rRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~ 591 (622)
T KOG0506|consen 513 AAKNGDLSAL-RRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKL 591 (622)
T ss_pred hhhcCCHHHH-HHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHH
Confidence 3444444443 33455689999999999999999999999999999996 589999999999999999999999999999
Q ss_pred HHHcCC
Q 001754 697 LVKLGA 702 (1017)
Q Consensus 697 LL~~GA 702 (1017)
|-+.-.
T Consensus 592 L~~~~~ 597 (622)
T KOG0506|consen 592 LEEAQY 597 (622)
T ss_pred HHHHhc
Confidence 987644
No 123
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.74 E-value=8.8e-05 Score=90.46 Aligned_cols=124 Identities=16% Similarity=0.027 Sum_probs=96.1
Q ss_pred HHHHHHhhHHHHHHHHHHhCC---CCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001754 615 IQNLLRNRLCEWLVWKIHEGG---KGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~G---ad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~ 691 (1017)
+..+++.+....+-+.|-+.+ .++|+.|.-|+++||.|..+-+.+++++|++++..+ .-+|.+|...|..
T Consensus 29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v 101 (822)
T KOG3609|consen 29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSV 101 (822)
T ss_pred HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHH
Confidence 334444444433333333322 478999999999999999999999999999998776 2489999999999
Q ss_pred HHHHHHHHcCCCCC----CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCC
Q 001754 692 ETVIMLVKLGAAPG----AVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL 745 (1017)
Q Consensus 692 eiV~~LL~~GAd~n----~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~ 745 (1017)
++|++|+.+-.... ..+.+.+...-+.|||.+||..++.+|+++|+.+|++.+.
T Consensus 102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence 99999998744321 2334456667889999999999999999999999977665
No 124
>PTZ00014 myosin-A; Provisional
Probab=97.73 E-value=9.6e-05 Score=93.04 Aligned_cols=102 Identities=19% Similarity=0.103 Sum_probs=73.2
Q ss_pred hhchHHH--HHhHHHHHHHHHHHHHHhhhhhhhccc-----CCchhHHHHHHHHhccccc--cccchh---h--------
Q 001754 789 RGSLAAV--RKSAHAAALIQQAFRVRSFRHRQSIQS-----SDDVSEVSVDLVALGSLNK--VSKMIH---F-------- 848 (1017)
Q Consensus 789 kdsL~Av--R~A~~AA~rIQ~aFR~~s~Rkr~L~~~-----~~~~~e~~~~ila~q~~~r--~~~~~~---~-------- 848 (1017)
-+-|.++ |.+++|.++.+..|+ .||+.|... ..+..+.|..|+.. ..+. ..+-+. |
T Consensus 689 ~GvLE~iri~r~Gyp~R~~f~~F~---~rY~~L~~~~~~~~~~d~k~~~~~il~~-~~l~~~~~~iGkTKVFlr~~~~~~ 764 (821)
T PTZ00014 689 LSILEALQLRQLGFSYRRTFAEFL---SQFKYLDLAVSNDSSLDPKEKAEKLLER-SGLPKDSYAIGKTMVFLKKDAAKE 764 (821)
T ss_pred hhHHHHHHHHhcCCcccccHHHHH---HHHHhcCcccccCCCCCHHHHHHHHHHH-cCCCcccEEecCCeEEEcCcHHHH
Confidence 3445555 688999999999999 899988542 12446778877752 1100 001010 1
Q ss_pred -----HHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 849 -----EDY---LHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQ 894 (1017)
Q Consensus 849 -----~~~---~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~ 894 (1017)
+.+ ...+++.||+.||||++||.|+++++++++||+++||+.+|++
T Consensus 765 Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 765 LTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112 2357899999999999999999999999999999999999875
No 125
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.61 E-value=7.2e-05 Score=86.33 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=84.0
Q ss_pred HHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCCCCCCCHHHHHHhc
Q 001754 650 HLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA--PGAVEDPTPAFPGGQTAADLASSR 727 (1017)
Q Consensus 650 H~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd--~n~~dd~~~~d~~G~TPLhlAa~~ 727 (1017)
..|+..+..--+.-+-..|-++-.++.+.+|-||+|+..|+.++|++||++|.. .+..+ ..|.|+||-|+..
T Consensus 871 l~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~d------e~get~lhkaa~~ 944 (1004)
T KOG0782|consen 871 LRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD------ETGETALHKAACQ 944 (1004)
T ss_pred HHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh------hhhhHHHHHHHHh
Confidence 344445444334444556888889999999999999999999999999999864 23333 7999999999999
Q ss_pred CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh
Q 001754 728 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 728 G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~ 764 (1017)
++..++++|+++| +.+.-.|.. |.||.+.+.
T Consensus 945 ~~r~vc~~lvdag-----asl~ktd~k-g~tp~eraq 975 (1004)
T KOG0782|consen 945 RNRAVCQLLVDAG-----ASLRKTDSK-GKTPQERAQ 975 (1004)
T ss_pred cchHHHHHHHhcc-----hhheecccC-CCChHHHHH
Confidence 9999999999999 788888888 999987764
No 126
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.53 E-value=0.00015 Score=80.84 Aligned_cols=85 Identities=25% Similarity=0.218 Sum_probs=67.0
Q ss_pred CcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001754 646 QGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 646 ~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa 725 (1017)
..-|..||+.|..+.|+.|++.|++||.+|.....||.+|+.+||+++|++||++||-...-+ ..|.-. |+++
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdt------f~G~RC-~Yga 109 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDT------FDGDRC-HYGA 109 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccc------cCcchh-hhhh
Confidence 356889999999999999999999999999999999999999999999999999999765433 455544 3444
Q ss_pred hcCcHHHHHHHHHc
Q 001754 726 SRGHKGIAGYLAEA 739 (1017)
Q Consensus 726 ~~G~~~iv~lLLe~ 739 (1017)
.+ ..|-++|+..
T Consensus 110 Ln--d~IR~mllsy 121 (516)
T KOG0511|consen 110 LN--DRIRRMLLSY 121 (516)
T ss_pred hh--HHHHHHHHHH
Confidence 33 2344455443
No 127
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.49 E-value=0.00013 Score=49.14 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001754 877 NHIVKLQAHVRGHQVRKQY 895 (1017)
Q Consensus 877 ~~aV~IQa~~Rg~qaRK~y 895 (1017)
+++|+||++|||+++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555554
No 128
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.47 E-value=0.00021 Score=73.51 Aligned_cols=70 Identities=20% Similarity=0.083 Sum_probs=65.7
Q ss_pred CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCC-CCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCC
Q 001754 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATG-VSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 704 (1017)
Q Consensus 635 Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~G-advn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~ 704 (1017)
+.++|.+|..|||+|+.||..|..+.|.+|+.+| +.|...|..|.+++.+|-..|+.++|..|.+.-.+-
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et 72 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET 72 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence 4689999999999999999999999999999999 999999999999999999999999999999875443
No 129
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.29 E-value=0.00031 Score=47.25 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 001754 853 HFAAIKIQQKYRGWKGRKDFL 873 (1017)
Q Consensus 853 ~~AAv~IQk~~Rg~~~Rk~fl 873 (1017)
+.||+.||+.||||++|++|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 469999999999999999985
No 130
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.14 E-value=0.0006 Score=76.23 Aligned_cols=58 Identities=28% Similarity=0.212 Sum_probs=54.0
Q ss_pred CchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCC
Q 001754 679 RTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLS 742 (1017)
Q Consensus 679 ~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~ 742 (1017)
.--|..||+.|..+.|+.|++.|.++|.+| .....||.+|+..||.++|++|+++|+-
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD------~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVD------RFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhh------cccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 346899999999999999999999999998 6889999999999999999999999954
No 131
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.02 E-value=0.00048 Score=86.19 Aligned_cols=85 Identities=25% Similarity=0.317 Sum_probs=72.4
Q ss_pred CCCCCcc--CCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCC
Q 001754 668 GVSPNFR--DARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL 745 (1017)
Q Consensus 668 Gadvn~~--D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~ 745 (1017)
++++|.. -..|.|+||.|+..|...++.+|++.|+++|..+ ..|+||||.+...|+...+..|+++|
T Consensus 644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d------~~g~~plh~~~~~g~~~~~~~ll~~~----- 712 (785)
T KOG0521|consen 644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALD------SKGRTPLHHATASGHTSIACLLLKRG----- 712 (785)
T ss_pred hhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhh------ccCCCcchhhhhhcccchhhhhcccc-----
Confidence 4555542 2358999999999999999999999999999988 79999999999999999999999999
Q ss_pred cCCccccCccchhHHHHHh
Q 001754 746 SSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 746 a~l~l~d~~~G~Ta~~ia~ 764 (1017)
++.++.+.+ |.+++.++.
T Consensus 713 a~~~a~~~~-~~~~l~~a~ 730 (785)
T KOG0521|consen 713 ADPNAFDPD-GKLPLDIAM 730 (785)
T ss_pred ccccccCcc-CcchhhHHh
Confidence 666666666 777777763
No 132
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=96.84 E-value=0.052 Score=70.41 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 851 YLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
....|++.||+.+|.++.+++|..+.+.+|.+|..+|-..||+++..+
T Consensus 840 ~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~ 887 (1463)
T COG5022 840 FSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQEL 887 (1463)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888888888888888888877666
No 133
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.44 E-value=0.11 Score=70.57 Aligned_cols=107 Identities=22% Similarity=0.283 Sum_probs=68.9
Q ss_pred hhhhhhchHHHH--HhHHHHHHHHHHHHHHhhhhhhhcccC-----CchhHHHHHHHH-hcc---ccccccchhh-----
Q 001754 785 QLSLRGSLAAVR--KSAHAAALIQQAFRVRSFRHRQSIQSS-----DDVSEVSVDLVA-LGS---LNKVSKMIHF----- 848 (1017)
Q Consensus 785 ~lslkdsL~AvR--~A~~AA~rIQ~aFR~~s~Rkr~L~~~~-----~~~~e~~~~ila-~q~---~~r~~~~~~~----- 848 (1017)
+|-..+-|.++| ..++|.++.+..|| .||..+.... .+....+..++. +.. +++..+...|
T Consensus 684 QLrcngVLEgIRicR~GfPnr~~~~eFr---qRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGv 760 (1930)
T KOG0161|consen 684 QLRCNGVLEGIRICRQGFPNRMPFQEFR---QRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGV 760 (1930)
T ss_pred HhhccCcHHHHHHHHhhCccccchHHHH---HhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHH
Confidence 344456677776 46889999999999 8888433311 222344444443 211 1111111112
Q ss_pred --------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 001754 849 --------EDYLHFAAIKIQQKYRGWKGRKDFLKIRN---HIVKLQAHVRGHQVRKQ 894 (1017)
Q Consensus 849 --------~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~---~aV~IQa~~Rg~qaRK~ 894 (1017)
+.....--+.+|..+|||.+|+.|.+.+. ++.+||.-+|.+...|.
T Consensus 761 la~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 761 LAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22466777899999999999999987764 58899999999977764
No 134
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.12 E-value=0.006 Score=43.21 Aligned_cols=20 Identities=45% Similarity=0.665 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 001754 853 HFAAIKIQQKYRGWKGRKDF 872 (1017)
Q Consensus 853 ~~AAv~IQk~~Rg~~~Rk~f 872 (1017)
..||+.||+.||||++|++|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666665
No 135
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=96.09 E-value=0.024 Score=53.75 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=66.4
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCC-------eecceeee----eCCeEEeecCC-CC-----
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGE-------IEVPAEVL----TDNVIRCQAPS-HA----- 502 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd-------~~vpae~~----~~gvLrC~~Pp-h~----- 502 (1017)
.|..++-.-++..||-+|.++|.++. ....-|.|++ .+.-+.+- ....|+|.+|| |.
T Consensus 2 ~I~r~s~~s~~~~GG~ev~Ll~~k~~------k~dikV~F~e~~~g~~~WE~~~~f~~~dv~q~aiv~~tP~y~~~~i~~ 75 (101)
T cd00602 2 PICRVSSLSGSVNGGDEVFLLCDKVN------KPDIKVWFGEKGPGETVWEAEAMFRQEDVRQVAIVFKTPPYHNKWITR 75 (101)
T ss_pred ceEEEeCCeeEcCCCcEEEEEecCCC------CCCCEEEEEecCCCCCeEEEEEEECHHHceEeEEEecCCCcCCCCccc
Confidence 58899999999999999999999882 3478999999 56666654 44569999998 44
Q ss_pred CceeeEEEecCCCcccCcceeeeee
Q 001754 503 AGRVPFYITGSNRLACSEVREFEYR 527 (1017)
Q Consensus 503 pG~Vp~~Vt~~n~~~cSEv~~FEyr 527 (1017)
|=.|+|++.-.+...+|+...|+|.
T Consensus 76 pV~V~i~L~r~~~~~~S~~~~FtY~ 100 (101)
T cd00602 76 PVQVPIQLVRPDDRKRSEPLTFTYT 100 (101)
T ss_pred cEEEEEEEEeCCCCeecCCcCeEEc
Confidence 5577888877767788999999995
No 136
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.09 E-value=0.0063 Score=43.09 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001754 875 IRNHIVKLQAHVRGHQVRKQYK 896 (1017)
Q Consensus 875 ~R~~aV~IQa~~Rg~qaRK~yk 896 (1017)
+.+++++||+.|||+.+|++|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4568999999999999999994
No 137
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.07 E-value=0.027 Score=67.75 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=68.9
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhcc-----cCCchhHHHHHHHHhccccccccchhh--------------------
Q 001754 794 AVRKSAHAAALIQQAFRVRSFRHRQSIQ-----SSDDVSEVSVDLVALGSLNKVSKMIHF-------------------- 848 (1017)
Q Consensus 794 AvR~A~~AA~rIQ~aFR~~s~Rkr~L~~-----~~~~~~e~~~~ila~q~~~r~~~~~~~-------------------- 848 (1017)
.+|.|++|-++.+..|. .|+..|.. +..|+.++|..|+.- .. ....+|
T Consensus 617 RvRRAGfAYRr~F~kF~---qRyailsp~t~~twqGD~~~av~~il~~-~~---m~~~qyQmG~tkVFiKnPEsLF~LEe 689 (1106)
T KOG0162|consen 617 RVRRAGFAYRRAFDKFA---QRYAILSPQTWPTWQGDEKQAVEHILRD-VN---MPSDQYQMGVTKVFIKNPESLFLLEE 689 (1106)
T ss_pred eehhhhhHHHHHHHHHH---HHheecCcccccccccchHHHHHHHHHh-cC---CChhHhhccceeEEecChHHHHHHHH
Confidence 35899999999999888 77777643 446667888888752 10 111111
Q ss_pred --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 849 --EDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 849 --~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
+++-+--|.+||++||.|.+||+|.++|..+.++ .-|...|++|--.
T Consensus 690 mRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l---l~gKKeRRr~Si~ 738 (1106)
T KOG0162|consen 690 MRERKWDGMARRIQKAWRRFVARRKYEKMREEATKL---LLGKKERRRYSIN 738 (1106)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHH
Confidence 3345678899999999999999999999988764 4577788877433
No 138
>KOG3610 consensus Plexins (functional semaphorin receptors) [Signal transduction mechanisms]
Probab=95.92 E-value=0.019 Score=73.12 Aligned_cols=95 Identities=21% Similarity=0.185 Sum_probs=77.1
Q ss_pred cCcCCceEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe-ecceeeeeCCe-EEeecCC-CCCceeeEE
Q 001754 433 LSQEQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPAEVLTDNV-IRCQAPS-HAAGRVPFY 509 (1017)
Q Consensus 433 ~~~~q~f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~-~vpae~~~~gv-LrC~~Pp-h~pG~Vp~~ 509 (1017)
...-|-+.|.++.|.|||+.|||+|+++|+.+.. .+...|++|+. +-+....+++. |+|..|+ -.++..|+.
T Consensus 137 ~~s~~~~~~~~~~P~~Gp~~ggt~v~~~Gs~l~~-----gs~~~~vv~~~~~c~~~~~~~~~~~~c~t~~~~~~~~~~~~ 211 (1025)
T KOG3610|consen 137 GSSLQGPCFLSAEPVNGPASGGTQVHCTGSPLDT-----GSCPDCVVSGLGPCVISVVQDSAVIFCVTSSQGAGSEAPVL 211 (1025)
T ss_pred ceeecceeEEeeccCcCCCCCCcceEEecccccc-----CCCceEEecCCccceeEeecCceEEEEecCCCCCCCccceE
Confidence 4456778999999999999999999999999854 47899999999 88888889986 9999999 446889999
Q ss_pred EecCCCcccCcceeeeeecCCCC
Q 001754 510 ITGSNRLACSEVREFEYREKPSK 532 (1017)
Q Consensus 510 Vt~~n~~~cSEv~~FEyr~~~~~ 532 (1017)
|..+....-....-|+|...+.-
T Consensus 212 v~f~~~~~~~~~~~f~y~~dps~ 234 (1025)
T KOG3610|consen 212 VSFDRTPQKLTPLAFNYTADPSY 234 (1025)
T ss_pred EEecccccccCCCCcccccCCcc
Confidence 98876554333567888765443
No 139
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.64 E-value=0.017 Score=39.15 Aligned_cols=27 Identities=44% Similarity=0.534 Sum_probs=15.6
Q ss_pred CCchhhHHHhcCCHHHHHHHHHcCCCC
Q 001754 678 GRTALHWASYFGREETVIMLVKLGAAP 704 (1017)
Q Consensus 678 G~TpLH~Aa~~G~~eiV~~LL~~GAd~ 704 (1017)
|.||||+|+..|+.++++.|+..|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 455666666666666666666555543
No 140
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.45 E-value=0.027 Score=65.59 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=40.3
Q ss_pred hhHHHHHhCCCCCCc------cCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001754 659 WAMRPIIATGVSPNF------RDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 659 ~iVk~LL~~Gadvn~------~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa 725 (1017)
..|++|.+++++.|+ .+..--|+||+|+..|..++|.+||+.|+|+...| ..|.||.+++.
T Consensus 405 ~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd------~~Grtpy~ls~ 471 (591)
T KOG2505|consen 405 DSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKD------GAGRTPYSLSA 471 (591)
T ss_pred hHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcc------cCCCCcccccc
Confidence 345555555555543 23335577777777777777777777777766655 67777777777
No 141
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=95.20 E-value=0.077 Score=48.56 Aligned_cols=66 Identities=15% Similarity=0.319 Sum_probs=54.9
Q ss_pred eEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCC-----------CCCceeeEEEecCCCcccCccee
Q 001754 455 TKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-----------HAAGRVPFYITGSNRLACSEVRE 523 (1017)
Q Consensus 455 tkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-----------h~pG~Vp~~Vt~~n~~~cSEv~~ 523 (1017)
.-+-++|.+| .+++.+-||++++-|-+-.+-.|.|.+|+ ..|..||+.+.-.++.+=+--..
T Consensus 20 amlEl~GenF-------~pnLkVWFG~veaeTmyR~~e~l~CvvPdis~f~~~w~~~~~p~~VPisLVR~DGvIY~T~lt 92 (97)
T cd01176 20 AMLELHGENF-------TPNLKVWFGDVEAETMYRCEESLLCVVPDISAFREEWRWVRQPVQVPISLVRNDGIIYPTGLT 92 (97)
T ss_pred EEEEEecCcC-------CCCceEEECCcceEEEEEccceeEEecCCHHHhccCceEecCceEeeEEEEecCCeEecCCce
Confidence 6678999999 66899999999999989999999999995 35788898887767776666677
Q ss_pred eeee
Q 001754 524 FEYR 527 (1017)
Q Consensus 524 FEyr 527 (1017)
|+|.
T Consensus 93 FtYt 96 (97)
T cd01176 93 FTYT 96 (97)
T ss_pred EEec
Confidence 7774
No 142
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=94.97 E-value=0.035 Score=37.51 Aligned_cols=29 Identities=28% Similarity=0.380 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHcCChhhHHHHHhCCCCCC
Q 001754 644 GGQGVVHLAAALGYEWAMRPIIATGVSPN 672 (1017)
Q Consensus 644 ~G~TpLH~AA~~G~~~iVk~LL~~Gadvn 672 (1017)
.|.||||+|+..|+.++++.|+..|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 47899999999999999999999998775
No 143
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=94.95 E-value=0.078 Score=50.05 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=59.7
Q ss_pred eEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe--------eccee----eeeCCeEEeecCC-CC---
Q 001754 439 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI--------EVPAE----VLTDNVIRCQAPS-HA--- 502 (1017)
Q Consensus 439 f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~--------~vpae----~~~~gvLrC~~Pp-h~--- 502 (1017)
..|.+.|-.-++.+||-+|.++|.++.- ...|.|-+. +.-++ .+....|+|.+|| |.
T Consensus 2 p~I~r~s~~s~sv~GG~Ev~Ll~~k~~k-------DikV~F~E~~~dG~~~WE~~a~f~~~~~hQ~aIvf~tPpY~~~~I 74 (101)
T cd01178 2 PEIEKKSLNSCSVNGGEELFLTGKNFLK-------DSKVVFQEKGQDGEAQWEAEATIDKEKSHQNHLVVEVPPYHNKHV 74 (101)
T ss_pred CeeEEeccCceeecCCCEEEEEehhcCC-------CCEEEEEEeCCCCccceEEEEEeChHhceeeeEEEecCCCCCCCc
Confidence 5799999999999999999999998822 356666531 33333 3455679999998 43
Q ss_pred --CceeeEEEecCCCcccCcceeeeee
Q 001754 503 --AGRVPFYITGSNRLACSEVREFEYR 527 (1017)
Q Consensus 503 --pG~Vp~~Vt~~n~~~cSEv~~FEyr 527 (1017)
|=.|-|++..+ ...+|+...|+|.
T Consensus 75 ~~pV~V~~~l~~~-~~~~S~~~~FtY~ 100 (101)
T cd01178 75 AAPVQVQFYVVNG-KRKRSQPQTFTYT 100 (101)
T ss_pred CCceEEEEEEEcC-CCCcCCCCCcEec
Confidence 56677777644 3467999999995
No 144
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.95 E-value=0.034 Score=64.72 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHHH
Q 001754 691 EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANET 770 (1017)
Q Consensus 691 ~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~ve~ 770 (1017)
...+.+|.+++++.|..-.|...+..--|+||+|+..|...+|.+||+.| .|+.++|.. |.||..++..+.|..
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-----~Dp~~kd~~-Grtpy~ls~nkdVk~ 477 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-----CDPSTKDGA-GRTPYSLSANKDVKS 477 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-----CCchhcccC-CCCcccccccHHHHH
Confidence 56789999999988876656666677889999999999999999999999 888899998 999998876555443
No 145
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.39 E-value=0.092 Score=65.03 Aligned_cols=117 Identities=21% Similarity=0.048 Sum_probs=88.9
Q ss_pred cHHHHHHHcCChhhHHHHHhC----CCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHH
Q 001754 647 GVVHLAAALGYEWAMRPIIAT----GVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAAD 722 (1017)
Q Consensus 647 TpLH~AA~~G~~~iVk~LL~~----Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLh 722 (1017)
--...||..|+...|+..++. ..++|.+|.-|+++|++|..+.+.+++++|++++... ..+|-
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------------gdALL 93 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------------GDALL 93 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------------chHHH
Confidence 345679999999999988864 2689999999999999999999999999999886553 34899
Q ss_pred HHHhcCcHHHHHHHHHccCCCCCcCC----ccccCccchh----HHHHHhHHHHHHHHHcCC
Q 001754 723 LASSRGHKGIAGYLAEADLSSHLSSL----TVNENGMDNV----AAALAAEKANETAAQIGV 776 (1017)
Q Consensus 723 lAa~~G~~~iv~lLLe~Ga~~~~a~l----~l~d~~~G~T----a~~ia~~~~ve~L~e~~a 776 (1017)
+|+..|..++|++|+.+-........ +...-.++-| |++.-+-++++.|+.+++
T Consensus 94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~ 155 (822)
T KOG3609|consen 94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH 155 (822)
T ss_pred HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence 99999999999999986533221111 1111111445 455556789999999997
No 146
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=93.78 E-value=0.25 Score=46.69 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=57.9
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe-------ecceee-----eeCCeEEeecCC-CC----
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-------EVPAEV-----LTDNVIRCQAPS-HA---- 502 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~-------~vpae~-----~~~gvLrC~~Pp-h~---- 502 (1017)
.|.+++=.-|++.||.+|.+++..+. +....|.|-+. +.-++| -..-.++|.+|| |.
T Consensus 2 ~I~r~s~~sgsv~GG~Ev~LLcdKV~------K~dI~VrF~e~~~~~~~We~~g~f~~~dVH~Q~AIvfkTPpY~~~~I~ 75 (102)
T cd01177 2 KICRLDKTSGSVKGGDEVYLLCDKVQ------KEDIQVRFFEEDEEETVWEAFGDFSQTDVHRQYAIVFRTPPYHDPDIT 75 (102)
T ss_pred EEEEecCcccccCCCcEEEEEecccC------CCCCEEEEEEcCCCCCceEEEeeECHHHcccceEEEEeCCCCCCCcCC
Confidence 69999999999999999999999873 34566666542 222323 233449999998 55
Q ss_pred -CceeeEEEecCCCcccCcceeeeee
Q 001754 503 -AGRVPFYITGSNRLACSEVREFEYR 527 (1017)
Q Consensus 503 -pG~Vp~~Vt~~n~~~cSEv~~FEyr 527 (1017)
|=.|-+++.-.....+|+...|+|.
T Consensus 76 ~pV~V~iqL~Rpsd~~~Sep~~F~Y~ 101 (102)
T cd01177 76 EPVKVKIQLKRPSDGERSESVPFTYV 101 (102)
T ss_pred CceEEEEEEEeCCCCCccCCcceEEc
Confidence 3445555554444558999999995
No 147
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=92.51 E-value=0.28 Score=59.76 Aligned_cols=104 Identities=22% Similarity=0.411 Sum_probs=65.3
Q ss_pred CChHHHHHHHHcccccc-----cCCCCCCCCCCCceee-ee--hhhhhhhhccCccceeccCCCchHHHhhhcccCCEe-
Q 001754 27 LRPTEICEILRNYQKFH-----LTPDPPVRPPAGSLFL-FD--RKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSID- 97 (1017)
Q Consensus 27 ~~~~e~~~~l~~~~~~~-----~~~~~~~~p~~g~~~~-~~--~~~~~~~~~dg~~w~~~~~~~~~~e~h~~l~~~~~~- 97 (1017)
|..+++.++|.+-.+.- +.-.=-.+|+-|+||| |- -++.-.|-.|||.|-- -|.--+..|+|..
T Consensus 30 l~~~~~~~~Ll~ap~i~r~~~P~~WtylD~P~DGtv~L~wqp~~~lg~~fasDGy~wad-------~E~~y~~~~~G~~l 102 (669)
T PF08549_consen 30 LPPETVVEYLLKAPQIARDTAPFFWTYLDKPPDGTVLLTWQPLNRLGTNFASDGYVWAD-------PEQAYTHEVNGYTL 102 (669)
T ss_pred CCHHHHHHHHHhchhhhccCCCeEeecccCCCCCcEEEEecCchhcCCcCCCCcceecC-------hhheeeecCCCeEE
Confidence 34456666665443211 1111236789999999 73 3456789999999974 1444444554443
Q ss_pred -eE---EEEecccccCccccceeeeeccCCC---------ccEEEEeeecccc
Q 001754 98 -VL---HCYYAHGEDNENFQRRSYWMLDGQL---------EHIVLVHYREVKE 137 (1017)
Q Consensus 98 -~~---~~~y~~~~~~~~f~rr~y~~~~~~~---------~~~v~vhy~~~~~ 137 (1017)
+. ++|+-=+|..-..-||.|-|+-... +..+||||..-..
T Consensus 103 Ei~~~k~G~~p~~e~~a~h~RrRyRL~~~~~p~pn~P~~DpsLwiVHY~~a~~ 155 (669)
T PF08549_consen 103 EIYEHKSGYHPPGEQYASHSRRRYRLVPGKVPNPNAPPPDPSLWIVHYGPAPP 155 (669)
T ss_pred EEEEeecCcCCCCCchhheeeeeeEecCCCCCCCCCCCCCCcEEEEEecCCCc
Confidence 21 2244436777789999999995433 5689999987553
No 148
>PTZ00014 myosin-A; Provisional
Probab=91.64 E-value=0.39 Score=61.29 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001754 877 NHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRG 916 (1017)
Q Consensus 877 ~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwr~kr 916 (1017)
..+++||+.|||+++||+|+++..++..+|+.+++|...+
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999987553
No 149
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=91.24 E-value=6.1 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001754 878 HIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 878 ~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
+++++|+..||+++||+++..
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchH
Confidence 466778888888888777665
No 150
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.36 E-value=7.6 Score=53.67 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=42.4
Q ss_pred HHHHHHHHhccccccccchh-h--HHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 001754 828 EVSVDLVALGSLNKVSKMIH-F--EDYLHFAAIKIQQKYRGWKGRKDFLKIRN---HIVKLQAHVRGHQVRK 893 (1017)
Q Consensus 828 e~~~~ila~q~~~r~~~~~~-~--~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~---~aV~IQa~~Rg~qaRK 893 (1017)
.....|+.+|+.+||+.+++ | +..+..|...||+.+|-|...|.|--.|- ---.||+.-+-...++
T Consensus 771 ~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~ 842 (1930)
T KOG0161|consen 771 KLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRA 842 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34555556677778888887 4 33567899999999999988877554442 2233444444444443
No 151
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=89.12 E-value=1.5 Score=53.54 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCchhHHHHHHHHhccccccccchhhHH-HHHHHHHHHHHHHHhHHHHHHHH-----
Q 001754 800 HAAALIQQAFRVRSFRHRQSIQSSDDVSEVSVDLVALGSLNKVSKMIHFED-YLHFAAIKIQQKYRGWKGRKDFL----- 873 (1017)
Q Consensus 800 ~AA~rIQ~aFR~~s~Rkr~L~~~~~~~~e~~~~ila~q~~~r~~~~~~~~~-~~~~AAv~IQk~~Rg~~~Rk~fl----- 873 (1017)
.-+..+|.++|++..|.++... ..+..-++ . |+. ++..++..||+.||||+.|+.|.
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rm--------ka~~~ii~-w--------yR~~K~ks~v~el~~~~rg~k~~r~ygk~~~W 759 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRM--------KASATIIR-W--------YRRYKLKSYVQELQRRFRGAKQMRDYGKSIRW 759 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-H--------HHHHHHHHHHHHHHHHHHhhhhccccCCCCCC
Confidence 4567899999999999888322 22222211 1 333 45556677888888888887764
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 874 -----KIRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 874 -----~~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
-+|+..-.+|..+-.+.+++-.+.+
T Consensus 760 P~pP~~Lr~~~~~L~~lf~rwra~~~~~~i 789 (1001)
T KOG0164|consen 760 PAPPLVLREFEELLRELFIRWRAWQILKSI 789 (1001)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2344555555555555554444443
No 152
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.88 E-value=6.4 Score=48.58 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001754 851 YLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQ 883 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQ 883 (1017)
.+..+.+.+|+..|||++||+|...-.-..+|=
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~ 843 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIAGIRKIN 843 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 466788999999999999999876654444443
No 153
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=86.72 E-value=5.7 Score=52.35 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 854 FAAIKIQQKYRGWK----GRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 854 ~AAv~IQk~~Rg~~----~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
-.-.-||..+||++ ....+......+|++|+..||+++||.|..+
T Consensus 566 P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~ 614 (1401)
T KOG2128|consen 566 PFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRK 614 (1401)
T ss_pred chHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 35556777777666 2333444455667777777777777766554
No 154
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=86.45 E-value=0.84 Score=55.11 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=91.3
Q ss_pred ceEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCCCCceeeEEEecCCCcc
Q 001754 438 LFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLA 517 (1017)
Q Consensus 438 ~f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph~pG~Vp~~Vt~~n~~~ 517 (1017)
..-|..|+|.-+..-+|+.|.|+|-++ ..++.|.||++ |+...+.+|...-.++...
T Consensus 322 ~~~i~~yvp~t~~q~~~~al~ivg~n~-------~~~l~~a~~~~----------------~~s~~~~~~~~~~n~~~~s 378 (605)
T KOG3836|consen 322 TKAIFTYVPSTDRQLIEYALQIVGLNM-------NGKLEDARNIA----------------NSSLSPTSPMMNNNSEQLS 378 (605)
T ss_pred cccceeeecCCCceeeeeEEEEecccc-------cCchhhhcCCc----------------cccCCCCCcceeccccccC
Confidence 357999999999999999999999998 55899999998 3322455565554443332
Q ss_pred cCcceeeeeecCCCCCCCCccccCCCchHHHHHHHHHHhhccCCccccccccccchhhhhhHHHHhhcccCCCCcccccc
Q 001754 518 CSEVREFEYREKPSKAGYPVASKIAPEDEVRLQTRLAKFLYLDPERKWFDCTIEDCNKCKLKNTIYSMRGDSEKDWGRVD 597 (1017)
Q Consensus 518 cSEv~~FEyr~~~~~~~~~~~~~~~~~~e~~Lq~Rl~~LL~~~~~~~~~~~~~~~~~k~~l~~~i~~l~~~~~~~w~~l~ 597 (1017)
+....+.+...... ... +.+ +++. +.+ ..|..+
T Consensus 379 -~~aI~~~~~~~~~s-~~~----------lSl-----------------------~~~~------~~~-----~~~ss~- 411 (605)
T KOG3836|consen 379 -PYAIMSQKPTNNLS-TVN----------LSL-----------------------CDVR------AAL-----NNSSSL- 411 (605)
T ss_pred -ccceeeecCCCCCC-ccc----------eee-----------------------ehhh------hhh-----cCCccc-
Confidence 44455555443222 100 000 0000 000 111111
Q ss_pred ccccccccCCCchHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCC
Q 001754 598 ESPMAIEGDCPNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDAR 677 (1017)
Q Consensus 598 e~l~~~~~~~~~~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~ 677 (1017)
+-.+++.|+.++..|..|.+|+|+++..|...+++.++....+++..-..
T Consensus 412 ------------------------------v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~~~~~~ 461 (605)
T KOG3836|consen 412 ------------------------------VFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAISLKSVN 461 (605)
T ss_pred ------------------------------eeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhhccccc
Confidence 11234456778888899999999999999999999988877766665555
Q ss_pred CCch
Q 001754 678 GRTA 681 (1017)
Q Consensus 678 G~Tp 681 (1017)
|.++
T Consensus 462 ~~~~ 465 (605)
T KOG3836|consen 462 GMIA 465 (605)
T ss_pred cccc
Confidence 5443
No 155
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=83.64 E-value=14 Score=48.87 Aligned_cols=50 Identities=30% Similarity=0.404 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 001754 849 EDYLHFAAIKIQQKYRGWKGRKDFLKIR-------NHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 849 ~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R-------~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
..-...-++.+|+..||+.+|+.|.... .++|+||+.+|+.++|+.|+.+
T Consensus 588 ~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 588 LDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHH
Confidence 3344567899999999999999987664 3589999999999999999998
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.16 E-value=16 Score=35.88 Aligned_cols=73 Identities=8% Similarity=0.026 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 942 EFLRIGRKQKFAGVEKALERVK---SMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 942 d~L~~~rkq~e~~~~~A~~rVq---sm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
..|...|..+.+.+-+.+.... +.. +...++.++..+...+..+-..+..-..++++|+.-|..+|+..+.-|
T Consensus 40 ~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 40 ARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666665555555443 222 566777888888777777777788888899999999999998877655
No 157
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=82.62 E-value=8.2 Score=41.92 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=60.0
Q ss_pred HHHHHhhhhhhhcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhh
Q 001754 911 RWRRRGSGLRGFRVGNSTANVASENEKTDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDD 990 (1017)
Q Consensus 911 rwr~kr~~Lr~~~~e~~~~~~~~~~~~~~~~d~L~~~rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~ 990 (1017)
++...|.+|+.||.... +-+..|..+..|++.+.+++..++|.| +-+..++++.++....+-+
T Consensus 28 ~f~~~reEl~EFQegSr-----------E~EaelesqL~q~etrnrdl~t~nqrl------~~E~e~~Kek~e~q~~q~y 90 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSR-----------EIEAELESQLDQLETRNRDLETRNQRL------TTEQERNKEKQEDQRVQFY 90 (333)
T ss_pred HHHHHHHHHHHHhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 34445667766665421 112345666777777777777777766 5666777777777777777
Q ss_pred ccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 991 GSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 991 ~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
+..+.+.+--+++.+.||+|+.|+.
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888874
No 158
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.30 E-value=3.1 Score=45.84 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHH--------------HHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 949 KQKFAGVEKALERVKSMV-RNPEARDQYMRMVAK--------------FENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 949 kq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e--------------~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
+.+..++.++..+++... .+.++|-|+-||+++ +++|+.++..++.-++.+|+.|...-.-|+.|
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKY 150 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKY 150 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Confidence 445556666677777666 677778888888743 35577777777777777777777776666666
Q ss_pred hhc
Q 001754 1014 VAD 1016 (1017)
Q Consensus 1014 ~~~ 1016 (1017)
..|
T Consensus 151 FvD 153 (305)
T PF15290_consen 151 FVD 153 (305)
T ss_pred Hhh
Confidence 554
No 159
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.69 E-value=40 Score=42.22 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001754 942 EFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 942 d~L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~ 1012 (1017)
=++++.+++++.+++..-.++|.+- |....|-.....+++++......+...++...|+.+|+++++.|..
T Consensus 433 v~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 433 VYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555665555555555555443 3333333333334444333333333444444444444444444433
No 160
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.81 E-value=3.2 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001754 848 FEDYLHFAAIKIQQKYRGWKGRKDFLK 874 (1017)
Q Consensus 848 ~~~~~~~AAv~IQk~~Rg~~~Rk~fl~ 874 (1017)
|.+++.+||+.||+.+|||.+||+|..
T Consensus 25 ~qrrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 25 YQRRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999998753
No 161
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.54 E-value=13 Score=33.61 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 948 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
..+++++++.|+..|.-+- ...+.+.+-..+..+...++...+.+..++..|+.+-..=++-|.+++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888887764 455555555555555555555556666667777776666666666554
No 162
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.65 E-value=32 Score=43.57 Aligned_cols=31 Identities=13% Similarity=-0.095 Sum_probs=22.0
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 985 ak~~~~~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
||-+++-.+..+-.-..||.+||.+|..++|
T Consensus 627 akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 627 AKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666667777888887777766
No 163
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=75.51 E-value=7.4 Score=42.01 Aligned_cols=121 Identities=11% Similarity=0.073 Sum_probs=79.7
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhHHHHHhCCCCCCccCC----CCCchhh
Q 001754 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDD-GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDA----RGRTALH 683 (1017)
Q Consensus 609 ~~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~-~G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~----~G~TpLH 683 (1017)
..++..|+.+++....+.+-.++ +|+ .-.++|-+|..++..+++-+|+.. .+....|. .+.--+-
T Consensus 151 ~lr~isledAV~AsN~~~i~~~V---------tdKkdA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydie 220 (284)
T PF06128_consen 151 KLRDISLEDAVKASNYEEISNLV---------TDKKDAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIE 220 (284)
T ss_pred ccccccHHHHHhhcCHHHHHHHh---------cchHHHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHH
Confidence 44566677777776666554432 122 235788888888888898888864 22222221 1233344
Q ss_pred HHHh--cCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCC
Q 001754 684 WASY--FGREETVIMLVKLG-AAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLS 742 (1017)
Q Consensus 684 ~Aa~--~G~~eiV~~LL~~G-Ad~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~Ga~ 742 (1017)
++.. .....+++..|..| +++|..- .+-..|.|-|+-|...++.+++.+|+++|+.
T Consensus 221 Y~LS~h~a~~kvL~~Fi~~Glv~vN~~F---~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 221 YLLSEHSASYKVLEYFINRGLVDVNKKF---QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HHHhhcCCcHHHHHHHHhccccccchhh---hccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 4433 34677888888887 3555421 1225899999999999999999999999964
No 164
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.37 E-value=17 Score=32.03 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 948 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
..+++++++.|+..|+-+. ...++++.-..+..+...++...+.++.+++.|+++-..-+|-|.++.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888887664 555555555555555555666667777777777777777777666664
No 165
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.88 E-value=16 Score=32.67 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 948 RKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
..+++.+++.|+..|..+ +.+..+++++..+.+.....+..++..|+.+-...++-|.+++
T Consensus 6 l~~LE~ki~~aveti~~L------q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALL------QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766665 5666666655555555555555556666655555555555544
No 166
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.48 E-value=6.5 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001754 851 YLHFAAIKIQQKYRGWKGRKDFLKI 875 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~fl~~ 875 (1017)
+...+|+.||+.||||.+|++++..
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555443
No 167
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.12 E-value=96 Score=39.10 Aligned_cols=30 Identities=7% Similarity=-0.228 Sum_probs=19.8
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 985 ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
+|.+++......+-+..++..|+.+|+.+-
T Consensus 470 ~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 470 QKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666777777777777653
No 168
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=69.02 E-value=30 Score=39.12 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhh--hcHHHHHHHHHHHHHH------HHhhhh-hhccCcchHHH-HhhhHhHHHHHHHhhhc
Q 001754 954 GVEKALERVKSMV--RNPEARDQYMRMVAKF------ENFKMC-DDGSGLLSQGE-DSLNGPTKDNLHAYVAD 1016 (1017)
Q Consensus 954 ~~~~A~~rVqsm~--r~~~AR~qyrrl~~e~------~~ak~~-~~~~~~~~~~L-~~el~~lke~l~~~~~~ 1016 (1017)
++..+...+++.. |.-.+..|+.+.++|. ++.|++ |.++...-..| ..||.+|+.+|+-||.+
T Consensus 186 ~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~ 258 (302)
T PF07139_consen 186 KIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSE 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Confidence 3334444444433 6666667777776543 444444 44433333333 35789999999999986
No 169
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.80 E-value=5.5 Score=32.29 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 972 RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
.+.|..++..+...+..-+.+..+++.|+.++..|++.++
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556666666666666666677788888888888887764
No 170
>KOG3610 consensus Plexins (functional semaphorin receptors) [Signal transduction mechanisms]
Probab=68.76 E-value=5.4 Score=51.75 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=52.2
Q ss_pred CCceEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCC--eecceeeeeCCeEEeecCCCC--CceeeEEEe
Q 001754 436 EQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGE--IEVPAEVLTDNVIRCQAPSHA--AGRVPFYIT 511 (1017)
Q Consensus 436 ~q~f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd--~~vpae~~~~gvLrC~~Pph~--pG~Vp~~Vt 511 (1017)
-+.++|++|+|.-++..|||.++|.|.++...-+.-..+. ++=|- ..++.+..--..+.|..-++. ||.|.+.|-
T Consensus 47 c~~P~i~~~~P~~g~~eggt~iti~g~nlg~~~~dv~~~v-~Va~v~c~~~~~~y~~~~~i~C~~~~~~~~~g~v~~~v~ 125 (1025)
T KOG3610|consen 47 CPLPSITALSPLNGPIEGGTNISIVGTNLGNSLNDVSDGV-KVAGVRCSPVAEEYDCSPCIACSPGANGSWPGPINVAVG 125 (1025)
T ss_pred cCCCcccceeeccccccCCceeeeeeeehhhhhhhccCCc-eEeeeecCCCccccccccceeeccCCCCCCCCceeEEec
Confidence 4466799999999999999999999999965322111121 22222 144556666667899888866 688888876
No 171
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=67.34 E-value=63 Score=42.27 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 868 GRKDFLKIRNHIVKLQAHVRGHQV 891 (1017)
Q Consensus 868 ~Rk~fl~~R~~aV~IQa~~Rg~qa 891 (1017)
..+++.+....+.++|-.+--.+.
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ 302 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQE 302 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777765554443
No 172
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.81 E-value=1.2e+02 Score=39.49 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 949 KQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 949 kq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
+.++..++.+..+++.-- +....+.+|.++..|.++.+.++..++.+...+..++.+++.++-++-
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777666 678888889999888777666666666666666666666666665543
No 173
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=66.40 E-value=1.9e+02 Score=33.81 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhc------cCcchHHHHhhhHhHHHHHHH
Q 001754 939 DEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDG------SGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~~------~~~~~~~L~~el~~lke~l~~ 1012 (1017)
.+|...++...+.+.+++.+-..|..+. +++.++.+++++.|.+++. +.+-+...|+-|..||++|+.
T Consensus 273 ~eYr~~~~~ls~~~~~y~~~s~~V~~~t------~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 273 QEYRSAQDELSEVQEKYKQASEGVSERT------RELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3355556566666666767776666664 4455555555554444332 334555666667777776654
No 174
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.68 E-value=47 Score=35.72 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 969 PEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
...|+.|..+++++++.+.+.+.+..++.+|..++..+++.|+
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk 173 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLK 173 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333444444333333333
No 175
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=62.87 E-value=33 Score=37.14 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=32.5
Q ss_pred HHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001754 961 RVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 961 rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~ 1012 (1017)
|+..|. ....+.++-++++.|-+..++..+.+-.++.+|..+|+.++++|-.
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 333443 4455566666666665666666666777777777777777766643
No 176
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=62.24 E-value=1.8e+02 Score=33.37 Aligned_cols=45 Identities=7% Similarity=-0.109 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 969 PEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
..+|.++..+..++..-|..+..++.++..++.++..+++++..+
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433
No 177
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.01 E-value=90 Score=35.81 Aligned_cols=40 Identities=5% Similarity=-0.120 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 972 RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
|.+++.+..++...+..++..+.++.+++..+...++++.
T Consensus 210 k~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 210 KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444443333
No 178
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.28 E-value=84 Score=33.94 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 001754 853 HFAAIKIQQKYRGWKGRKD 871 (1017)
Q Consensus 853 ~~AAv~IQk~~Rg~~~Rk~ 871 (1017)
..-|-+.|...||...+-+
T Consensus 72 ReLA~kf~eeLrg~VGhiE 90 (290)
T COG4026 72 RELAEKFFEELRGMVGHIE 90 (290)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 3457788888888887655
No 179
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=59.69 E-value=2.1e+02 Score=37.83 Aligned_cols=59 Identities=8% Similarity=0.003 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 955 VEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 955 ~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
+++.+.+++. ....++.++...+.+++.-+.+.+..+..+.+|+..+..-.++|+++-+
T Consensus 406 L~~evek~e~--~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 406 LKKEVEKLEE--QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444 4556677777777777777777777778888888888877777777654
No 180
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=59.58 E-value=73 Score=37.97 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 850 DYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVE 906 (1017)
Q Consensus 850 ~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~le 906 (1017)
+..++||-.+|-.|.-||..|-+.+.- ....||.+++++.|+..+.
T Consensus 361 ~~KnAAA~VLqeTW~i~K~trl~~k~~-----------~~rlR~hQRkfL~AI~~fR 406 (489)
T KOG3684|consen 361 EHKNAAANVLQETWLIYKHTKLVSKGD-----------QARLRKHQRKFLQAIHQFR 406 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc-----------hHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999888763221 1345677777877776543
No 181
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.56 E-value=1.2e+02 Score=38.75 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHH
Q 001754 848 FEDYLHFAAIKIQQKYRGWKGRKD 871 (1017)
Q Consensus 848 ~~~~~~~AAv~IQk~~Rg~~~Rk~ 871 (1017)
|-.+.+.|...||++.+--+.-++
T Consensus 552 Yi~~~~~ar~ei~~rv~~Lk~~~e 575 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVKLLKQQKE 575 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567788888888776655444
No 182
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=59.28 E-value=11 Score=28.97 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 001754 854 FAAIKIQQKYRGWKGRKD 871 (1017)
Q Consensus 854 ~AAv~IQk~~Rg~~~Rk~ 871 (1017)
-||..||-.||.|+.||.
T Consensus 10 YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 489999999999999886
No 183
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.71 E-value=3.2e+02 Score=35.39 Aligned_cols=93 Identities=13% Similarity=0.198 Sum_probs=64.6
Q ss_pred hhhhhcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcHHHHHHHHHHHHHHHHhhhhhhcc
Q 001754 918 GLRGFRVGNSTANVASENEKTDEYEFLRIGRKQKFAGVEKALERVKSMV-----RNPEARDQYMRMVAKFENFKMCDDGS 992 (1017)
Q Consensus 918 ~Lr~~~~e~~~~~~~~~~~~~~~~d~L~~~rkq~e~~~~~A~~rVqsm~-----r~~~AR~qyrrl~~e~~~ak~~~~~~ 992 (1017)
.|+-++.+.++.+.. .....-|.|.+ ..+...++.++++|+...- .+.++.+++.+.+.|+.+.+..-+++
T Consensus 347 dlEILKaEmeekG~~--~~~~ss~qfkq--lEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~L 422 (1243)
T KOG0971|consen 347 DLEILKAEMEEKGSD--GQAASSYQFKQ--LEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERL 422 (1243)
T ss_pred HHHHHHHHHHhcCCC--CcccchHHHHH--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334455555444321 11233466666 6666789999999997553 46677888888888888877777888
Q ss_pred CcchHHHHhhhHhHHHHHHHhh
Q 001754 993 GLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 993 ~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
+.+++.+...|..+|||+.|-+
T Consensus 423 sr~~d~aEs~iadlkEQVDAAl 444 (1243)
T KOG0971|consen 423 SRELDQAESTIADLKEQVDAAL 444 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888887643
No 184
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.58 E-value=24 Score=43.93 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001754 858 KIQQKYRGWKGRKDFLKIR-NHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 858 ~IQk~~Rg~~~Rk~fl~~R-~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
-||+.-+.-- -|.|.+.| ++++.||++||||.+||+|..-
T Consensus 12 fl~k~~qeRE-er~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~ 52 (1096)
T KOG4427|consen 12 FLAKVSQERE-ERSYQRRREAAALFIQRVLRSYLVRKKAQIE 52 (1096)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454433222 23444444 4789999999999999999654
No 185
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.50 E-value=43 Score=36.96 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=8.4
Q ss_pred hHHHHhhhHhHHHHHHHhhh
Q 001754 996 SQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 996 ~~~L~~el~~lke~l~~~~~ 1015 (1017)
..++.-.+..+-+.|+.||+
T Consensus 100 ~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 100 RQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444443
No 186
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.52 E-value=40 Score=36.33 Aligned_cols=33 Identities=3% Similarity=-0.128 Sum_probs=16.9
Q ss_pred HHHHHHHhhhhhhccCcchHHHHhhhHhHHHHH
Q 001754 978 MVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 978 l~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l 1010 (1017)
++.+.++.+.++..++++++.|+.++..+++.+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555555443
No 187
>PRK09039 hypothetical protein; Validated
Probab=56.69 E-value=1.2e+02 Score=35.27 Aligned_cols=39 Identities=13% Similarity=-0.041 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhH
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPT 1006 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~l 1006 (1017)
...+|+|+.++..++..++......+..+++|+.+|..+
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444444444444444444444333
No 188
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=56.08 E-value=48 Score=29.60 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhhh--hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 951 KFAGVEKALERVKSMV--RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 951 ~e~~~~~A~~rVqsm~--r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
+|.++..|+.-+|.-+ +...-...|..++..+..++.....+...+..|..+|..|-++++++
T Consensus 4 LE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666555 55556677777777777777777788888999999999998888765
No 189
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.03 E-value=4.3e+02 Score=36.12 Aligned_cols=42 Identities=5% Similarity=-0.124 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHH
Q 001754 969 PEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l 1010 (1017)
..++.++..++.+..++...+...+..+.+++.++.++..+|
T Consensus 493 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 493 EELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444555555555555555444
No 190
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=54.72 E-value=18 Score=39.15 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=40.3
Q ss_pred ChhhHHHHHhCC-CCCCc---cCCCCCchhhHHHhcCCHHHHHHHHHcCCCC
Q 001754 657 YEWAMRPIIATG-VSPNF---RDARGRTALHWASYFGREETVIMLVKLGAAP 704 (1017)
Q Consensus 657 ~~~iVk~LL~~G-advn~---~D~~G~TpLH~Aa~~G~~eiV~~LL~~GAd~ 704 (1017)
+..+++.+|..| ++||. +-..|.|-|.-|...+..+++.+||++||-.
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 567788888888 57775 3456999999999999999999999999853
No 191
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.70 E-value=1.1e+02 Score=37.51 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 868 GRKDFLKIRNHIVKLQAHVRGHQVRKQY 895 (1017)
Q Consensus 868 ~Rk~fl~~R~~aV~IQa~~Rg~qaRK~y 895 (1017)
-|+.+..++..+.+.|+++-++..+++-
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~ 291 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQH 291 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence 4666777777888888888888777653
No 192
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=52.96 E-value=1.5e+02 Score=31.30 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhc
Q 001754 902 VSIVEKAILRWRRRGSGLRGFR 923 (1017)
Q Consensus 902 v~~lek~i~rwr~kr~~Lr~~~ 923 (1017)
|..||..|..|+++...|.+.-
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888777775544
No 193
>PRK11637 AmiB activator; Provisional
Probab=52.86 E-value=50 Score=39.40 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
...+.+++..+..++.+.+.+++.++.++.+++.+|..+++.+...+
T Consensus 84 i~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 84 ISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555566666666666667777777777777766666544
No 194
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.11 E-value=69 Score=37.44 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=29.0
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001754 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~ 1012 (1017)
.+..+++++...+++++++.........+++++..+|...|.+++.
T Consensus 274 eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 274 EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666666666777777777777776653
No 195
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.06 E-value=55 Score=35.25 Aligned_cols=33 Identities=6% Similarity=0.038 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001754 971 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 971 AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el 1003 (1017)
++.+++++++++..++.+.+.++.++++++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666543
No 196
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=51.74 E-value=20 Score=42.00 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 001754 851 YLHFAAIKIQQKYRGWKGRKDF 872 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~f 872 (1017)
+-.+||+.||+.||+|.+|.+-
T Consensus 15 raikaAilIQkWYRr~~ARle~ 36 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEA 36 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999874
No 197
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=51.72 E-value=71 Score=29.32 Aligned_cols=64 Identities=27% Similarity=0.287 Sum_probs=41.7
Q ss_pred eEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCC-eeccee-eeeCCe--EEeecCC-CCCceeeEEEe
Q 001754 439 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGE-IEVPAE-VLTDNV--IRCQAPS-HAAGRVPFYIT 511 (1017)
Q Consensus 439 f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd-~~vpae-~~~~gv--LrC~~Pp-h~pG~Vp~~Vt 511 (1017)
.+|.-++|.---..++++|+|.|.+|.. .++||. ++|..- -..++- ++-.++. -.||.+++.|.
T Consensus 2 p~i~aV~P~~lkaG~~t~vti~Gt~L~~---------~v~l~~Gv~v~~v~~~s~~~v~v~V~~aa~a~~G~~~v~vg 70 (81)
T PF09099_consen 2 PTILAVSPAGLKAGEETTVTIVGTGLAG---------TVDLGPGVEVLKVVSASPDEVVVRVKAAADAAPGIRTVRVG 70 (81)
T ss_dssp SEEEEEESSEEETTCEEEEEEEEES-TT----------EE--TTEEEEEEEEE-STCEEEEEEEECTSSSEEEEEEET
T ss_pred CeEEEECchhccCCCeEEEEEEecCccc---------ceecCCCeEEEEEEEeCCCEEEEEEEEcCCCCCccEEEEec
Confidence 3799999999999999999999999943 366776 444432 234443 3335554 66788887764
No 198
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.49 E-value=2.6e+02 Score=35.70 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001754 941 YEFLRIGRKQKFAGVEKALERVK 963 (1017)
Q Consensus 941 ~d~L~~~rkq~e~~~~~A~~rVq 963 (1017)
-+.++..++++|.++.+....++
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556566666655544443333
No 199
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.61 E-value=7.8e+02 Score=33.12 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=10.4
Q ss_pred eCCe---ecceeeeeCCeEEee
Q 001754 479 FGEI---EVPAEVLTDNVIRCQ 497 (1017)
Q Consensus 479 FGd~---~vpae~~~~gvLrC~ 497 (1017)
||+. +--.-+|.|-...|.
T Consensus 1092 fGGR~C~qCqel~WGdP~~~C~ 1113 (1758)
T KOG0994|consen 1092 FGGRTCSQCQELYWGDPNEKCR 1113 (1758)
T ss_pred CCCcchhHHHHhhcCCCCCCce
Confidence 7774 333456776544443
No 200
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.44 E-value=67 Score=29.20 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 955 VEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 955 ~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
+++.-.+||..+ -+..++-++..++++-.....+.....+...+|..+...||++..++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455667888777 67777777777766666666666666677777999999999988776
No 201
>PRK11637 AmiB activator; Provisional
Probab=49.37 E-value=63 Score=38.56 Aligned_cols=40 Identities=3% Similarity=-0.099 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 972 RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
.+++..+..++...+.++...+.++..++.+|..++++|.
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444443
No 202
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=49.04 E-value=66 Score=32.62 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=57.9
Q ss_pred eecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCC----e-ecceeeeeCCeEEeecCCC---CCceeeEEEecCCC
Q 001754 444 FSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGE----I-EVPAEVLTDNVIRCQAPSH---AAGRVPFYITGSNR 515 (1017)
Q Consensus 444 ~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd----~-~vpae~~~~gvLrC~~Pph---~pG~Vp~~Vt~~n~ 515 (1017)
|-|.--.++.. ||.|+=.--. .......|.|-. + .+++.+|-+-|+++.+|.+ -+|.|.+.|.|+|-
T Consensus 3 V~P~rI~cg~~-~vfIiL~~~l----~~~~~~eVef~~~n~~~~~~~~~~~N~yt~~~~aPd~~~~pag~V~v~v~~~g~ 77 (142)
T PF14545_consen 3 VQPSRIRCGQP-EVFIILRDPL----DEEDTVEVEFESNNKPIRRVPAKWENPYTLQFKAPDFCLEPAGSVNVRVYCDGV 77 (142)
T ss_pred ecCceeecCCC-EEEEEEeCCC----CCCCeEEEEEEeCCCeeEeccceEECCEEEEEECchhcCCCCceEEEEEEECCE
Confidence 56888888888 8888765321 123567888865 2 5889999999999999999 99999999999886
Q ss_pred cccCcceeeeee
Q 001754 516 LACSEVREFEYR 527 (1017)
Q Consensus 516 ~~cSEv~~FEyr 527 (1017)
..| .+...|.
T Consensus 78 ~~~--~~~ikyy 87 (142)
T PF14545_consen 78 SLG--TRQIKYY 87 (142)
T ss_pred EEE--EEeEEEE
Confidence 664 3344544
No 203
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.88 E-value=70 Score=38.82 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=37.2
Q ss_pred hhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhhc
Q 001754 966 VRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVAD 1016 (1017)
Q Consensus 966 ~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~~~ 1016 (1017)
++..++.-+..++..+.++.|..+..-+.++..|+.++++++.+++.+++.
T Consensus 100 ~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 100 VKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 344455555566666667777777778888888888888888888888764
No 204
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=48.18 E-value=60 Score=28.83 Aligned_cols=59 Identities=5% Similarity=-0.098 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 949 KQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 949 kq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
..+..++..+..++.... ..++.+..|-..+-..+...-.++.+|+.++..|+.+|+.+
T Consensus 8 ~~Lr~rLd~~~rk~~~~~------~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHE------IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555555555543 33334433333333444445556677777777777777654
No 205
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=47.91 E-value=1.4e+02 Score=32.35 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhh
Q 001754 939 DEYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKM 987 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~ 987 (1017)
++-+-|++..+.....++++...+.++- +.....+||.|++++....+.
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3344444444444555555655555555 555566666666665544443
No 206
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=46.79 E-value=39 Score=29.10 Aligned_cols=34 Identities=6% Similarity=-0.071 Sum_probs=20.1
Q ss_pred HHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 981 KFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 981 e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
.+.+....+..++.++..|+.++..|+.++.++-
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666665553
No 207
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.48 E-value=1.9e+02 Score=30.51 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001754 880 VKLQAHVRGHQVRKQ 894 (1017)
Q Consensus 880 V~IQa~~Rg~qaRK~ 894 (1017)
..+|.+.|.+.+.|+
T Consensus 89 ~~~~~~~~~fraQRN 103 (192)
T PF05529_consen 89 TEDQVLAKKFRAQRN 103 (192)
T ss_pred hhHHHHHHHHHHHHh
Confidence 456666666655443
No 208
>KOG3743 consensus Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5) [Transcription]
Probab=46.02 E-value=26 Score=42.04 Aligned_cols=71 Identities=15% Similarity=0.307 Sum_probs=50.2
Q ss_pred CCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCC-----------CCCceeeEEEecCCCcccCc
Q 001754 452 GAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-----------HAAGRVPFYITGSNRLACSE 520 (1017)
Q Consensus 452 ~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-----------h~pG~Vp~~Vt~~n~~~cSE 520 (1017)
..-+-+.+.|.+| ..++.+-||++|++|.+-..-+|.|.+|+ |.|-.||+-.+-..+..-+-
T Consensus 505 gd~amlel~g~nf-------~p~l~vwfg~~e~et~~r~~~sl~c~Vp~vs~f~~~w~~~~~P~~~~islvr~dg~vy~~ 577 (622)
T KOG3743|consen 505 GDVAMLELHGQNF-------VPNLQVWFGDVEAETYYRSGESLQCVVPDVSAFRQEWLWTRGPTFVPISLVRTDGTVYAS 577 (622)
T ss_pred cceeEEEecCCCC-------CCCceeeccccCchhhhcccceEEEEeCChhhcccchhcccCceeeeeeheeccceEEec
Confidence 3456788999999 45799999999999999888899999995 33444555444333333344
Q ss_pred ceeeeeecC
Q 001754 521 VREFEYREK 529 (1017)
Q Consensus 521 v~~FEyr~~ 529 (1017)
.-.|.|...
T Consensus 578 ~~~fty~pe 586 (622)
T KOG3743|consen 578 GLTFTYTPE 586 (622)
T ss_pred cceEEeccc
Confidence 456777544
No 209
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=45.70 E-value=9.2e+02 Score=32.53 Aligned_cols=30 Identities=7% Similarity=-0.011 Sum_probs=19.8
Q ss_pred HhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 984 NFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 984 ~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
.....|+....++..|..+|.++-..|+.-
T Consensus 1721 ~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1721 RNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 344446667777777777777777666543
No 210
>PF05587 Anth_Ig: Anthrax receptor extracellular domain; InterPro: IPR008400 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to IPR002909 from INTERPRO.; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3N2N_E 1SHT_X 1TZN_o 1SHU_X.
Probab=45.60 E-value=6.9 Score=37.45 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEe--CC--e--ecceeeeeCCeEEeecCC-CCCcee-eEEEe
Q 001754 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMF--GE--I--EVPAEVLTDNVIRCQAPS-HAAGRV-PFYIT 511 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~F--Gd--~--~vpae~~~~gvLrC~~Pp-h~pG~V-p~~Vt 511 (1017)
.|..+-|.-.-..+.-.|.|.|..|..... .....|-| .+ + +-|+ .++++.|.|-+|- ++||.+ .+.|+
T Consensus 7 Eil~~ePSsvC~ge~f~Vvv~G~GF~~~~~--~d~ViC~F~~n~t~~~~~KP~-~v~dt~llCPaP~l~~~G~~~~v~VS 83 (105)
T PF05587_consen 7 EILSVEPSSVCVGESFQVVVRGNGFNNARN--VDQVICRFKFNDTKTVDEKPV-SVEDTYLLCPAPVLEEPGQTIFVEVS 83 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEcCCceECCCceEEEEECccccccCC--CCeEEEEEEECCeeEEEeCCc-EEcCCEEECCCccccCCCCEEEEEEE
Confidence 588889999999999999999997755432 34566776 33 2 4444 7899999999998 999965 55666
Q ss_pred cCCCc
Q 001754 512 GSNRL 516 (1017)
Q Consensus 512 ~~n~~ 516 (1017)
..|+.
T Consensus 84 lNnG~ 88 (105)
T PF05587_consen 84 LNNGK 88 (105)
T ss_dssp -----
T ss_pred EcCCE
Confidence 65444
No 211
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.51 E-value=1.9e+02 Score=31.91 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhh
Q 001754 905 VEKAILRWRRRGS 917 (1017)
Q Consensus 905 lek~i~rwr~kr~ 917 (1017)
.++.+..|...+.
T Consensus 40 sQ~~id~~~~e~~ 52 (251)
T PF11932_consen 40 SQKRIDQWDDEKQ 52 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555544433
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.21 E-value=1.9e+02 Score=34.55 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=15.5
Q ss_pred hhccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 989 DDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 989 ~~~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
.+..+..+..+..++..|+|||..+|.
T Consensus 423 ~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 423 EEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 333445555566666666666666553
No 213
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=28 Score=44.43 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 866 WKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVS 903 (1017)
Q Consensus 866 ~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~ 903 (1017)
-+.|.+=++.-+.+|+||+.|||+.+|++.+.+.+++-
T Consensus 19 r~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~f 56 (1001)
T KOG0942|consen 19 RHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREEF 56 (1001)
T ss_pred HHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455655666789999999999999999988866543
No 214
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.21 E-value=3.6e+02 Score=34.68 Aligned_cols=6 Identities=33% Similarity=0.113 Sum_probs=2.8
Q ss_pred eEEEEe
Q 001754 439 FSIRDF 444 (1017)
Q Consensus 439 f~I~d~ 444 (1017)
|.|.++
T Consensus 288 c~i~~l 293 (717)
T PF10168_consen 288 CSILCL 293 (717)
T ss_pred eeEEEe
Confidence 444444
No 215
>PRK09039 hypothetical protein; Validated
Probab=44.05 E-value=93 Score=36.15 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=33.3
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhhc
Q 001754 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVAD 1016 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~~~ 1016 (1017)
+...+++|...++..+...++.+...+....+.+.++.+++.+|++.+|+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666667777777777777777777777776653
No 216
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.80 E-value=1.3e+02 Score=31.43 Aligned_cols=32 Identities=6% Similarity=-0.089 Sum_probs=14.7
Q ss_pred HHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 980 AKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 980 ~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
.+.+..+..........+.+...+.++++.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444445555555555554444
No 217
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.71 E-value=1.6e+02 Score=30.76 Aligned_cols=44 Identities=2% Similarity=-0.073 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
.....++++.+..+.++.+.........+.+++.....+.+.++
T Consensus 139 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 139 IKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445544444444445555555555555444444444443
No 218
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.29 E-value=38 Score=40.65 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=33.1
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
+-.++.+++..++.+++.......+++..+++|..++..|+++++|.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555677777776666555666677777788888888888887654
No 219
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=43.09 E-value=72 Score=37.45 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
+...+.|.-.++.+.+..++.+.+.+.++++|+.|+..+.|+.-
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555555555555555555443
No 220
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.00 E-value=1e+02 Score=31.92 Aligned_cols=47 Identities=4% Similarity=0.052 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
...++.+.++++.++.+.+...+.++.++..|..++...+++-++++
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888888888888888888887775
No 221
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.89 E-value=3.8e+02 Score=28.74 Aligned_cols=9 Identities=22% Similarity=0.689 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 001754 905 VEKAILRWR 913 (1017)
Q Consensus 905 lek~i~rwr 913 (1017)
+++.+..|.
T Consensus 63 ~~~~~~~~~ 71 (221)
T PF04012_consen 63 AEEEAEKWE 71 (221)
T ss_pred HHHHHHHHH
Confidence 334444444
No 222
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.46 E-value=1.1e+02 Score=27.11 Aligned_cols=23 Identities=0% Similarity=-0.293 Sum_probs=11.5
Q ss_pred hhhhhhccCcchHHHHhhhHhHH
Q 001754 985 FKMCDDGSGLLSQGEDSLNGPTK 1007 (1017)
Q Consensus 985 ak~~~~~~~~~~~~L~~el~~lk 1007 (1017)
+-....+++.+++.|+.+|..++
T Consensus 45 a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 45 AYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334445555555555555444
No 223
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=41.15 E-value=50 Score=28.68 Aligned_cols=43 Identities=5% Similarity=-0.008 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 971 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 971 AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
+..++.+.+.....++..+...+..+.+|..+|..|+++++.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666677777778888888888888887765
No 224
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.14 E-value=4.3e+02 Score=36.06 Aligned_cols=58 Identities=9% Similarity=0.168 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhh-hhccCcchHHHHhhhHhHHHHHH
Q 001754 954 GVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMC-DDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 954 ~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~-~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
+++.....+..+. .+....++|.+++.+++..... .+..+.+.+.++.+....+++..
T Consensus 360 ~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 419 (1201)
T PF12128_consen 360 ELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIE 419 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444 4555556666665555432222 33344445555555544444443
No 225
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=40.49 E-value=94 Score=30.95 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhH
Q 001754 941 YEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPT 1006 (1017)
Q Consensus 941 ~d~L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~l 1006 (1017)
++.|...|+++..|++..-.++..+. -...-+++.-.++.++.+.+.+++.....+..|...|.++
T Consensus 56 s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888877777776664 2333344444444444444444444444444444444433
No 226
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.26 E-value=2.5e+02 Score=32.27 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 001754 881 KLQAHVRGH 889 (1017)
Q Consensus 881 ~IQa~~Rg~ 889 (1017)
.+|+-+|.-
T Consensus 72 llq~kirk~ 80 (401)
T PF06785_consen 72 LLQTKIRKI 80 (401)
T ss_pred HHHHHHHHH
Confidence 345555543
No 227
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.21 E-value=1.2e+03 Score=32.78 Aligned_cols=20 Identities=10% Similarity=0.315 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001754 867 KGRKDFLKIRNHIVKLQAHV 886 (1017)
Q Consensus 867 ~~Rk~fl~~R~~aV~IQa~~ 886 (1017)
.+++.+.........|...+
T Consensus 297 eA~kkLe~tE~nL~rI~diL 316 (1486)
T PRK04863 297 TSRRQLAAEQYRLVEMAREL 316 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455554444
No 228
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=40.16 E-value=3e+02 Score=29.39 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001754 939 DEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el 1003 (1017)
+++.-|-+..++++..-+..++.|+.+ +.+-.+++.+....+.....+.++...|+.+|
T Consensus 81 E~~~~L~aq~rqlEkE~q~L~~~i~~L------qeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 81 EENRSLLAQARQLEKEQQSLVAEIETL------QEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 445555566666666665666555554 44444444444444444444444444444443
No 229
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.98 E-value=1.2e+02 Score=33.78 Aligned_cols=19 Identities=11% Similarity=-0.101 Sum_probs=8.6
Q ss_pred cchHHHHhhhHhHHHHHHH
Q 001754 994 LLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 994 ~~~~~L~~el~~lke~l~~ 1012 (1017)
..+.++..++..+++.++.
T Consensus 119 ~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 119 EQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 230
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=39.66 E-value=93 Score=33.77 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=50.0
Q ss_pred CCceEEEEEccCCCCCCC--------CCCCceEEEeCCeecceeeeeCCeEEeecCC-CCCceeeEEEecCCC
Q 001754 452 GAETKVLIIGMFLGTKKL--------SSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-HAAGRVPFYITGSNR 515 (1017)
Q Consensus 452 ~ggtkVlV~G~~~~~~~~--------~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-h~pG~Vp~~Vt~~n~ 515 (1017)
.-|.=|+|-|.+|..... ..-.+.++.|+++..|--+++++-+.|.+|. -.+|.+.+.|...+.
T Consensus 3 APG~~vsIfG~~L~~~t~~~~~~plpt~l~Gv~V~vnG~~APl~yvSp~QIN~qvP~~~~~g~~~v~V~~~g~ 75 (215)
T TIGR03437 3 APGSIVSIFGTNLAPATLTAAGGPLPTSLGGVSVTVNGVAAPLLYVSPGQINAQVPYEVAPGAATVTVTYNGG 75 (215)
T ss_pred CCCcEEEEEeccCCCccccccCCCCccccCCeEEEECCEEEEEEEeCcceEEEEeCCCcCCCcEEEEEEeCCc
Confidence 346678899998864211 1225678999999999999999999999997 678999999986443
No 231
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.66 E-value=3.9e+02 Score=28.56 Aligned_cols=69 Identities=10% Similarity=-0.030 Sum_probs=44.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHH----HHHHHhhhhhhccCcchHHHHhhhHh
Q 001754 937 KTDEYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMV----AKFENFKMCDDGSGLLSQGEDSLNGP 1005 (1017)
Q Consensus 937 ~~~~~d~L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~----~e~~~ak~~~~~~~~~~~~L~~el~~ 1005 (1017)
+..+++.|......++.+++.+-.+|+.+- +...+-..|++.. ....+++..+..+..++..|++.|..
T Consensus 116 nL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 116 NLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888888889999999999887 4444444555543 23344555555555555555555544
No 232
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=37.55 E-value=92 Score=32.94 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=43.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH-HHHHhhh-hcHHHHHHHHHHH---HHHHHhhhhhhccCcchHHHHhh
Q 001754 937 KTDEYEFLRIGRKQKFAGVEKAL-ERVKSMV-RNPEARDQYMRMV---AKFENFKMCDDGSGLLSQGEDSL 1002 (1017)
Q Consensus 937 ~~~~~d~L~~~rkq~e~~~~~A~-~rVqsm~-r~~~AR~qyrrl~---~e~~~ak~~~~~~~~~~~~L~~e 1002 (1017)
+..|.+.|+..+..+..+++++- .++..|+ ++...++.-+++. .|++..|....+++.+|.+|+..
T Consensus 7 ~~sDeell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 7 KVSDEELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred cCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776666553 3566677 6666666666665 45677777777777777777654
No 233
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=37.15 E-value=6e+02 Score=32.78 Aligned_cols=41 Identities=7% Similarity=-0.117 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke 1008 (1017)
..+.++|+..+..+..+.+..+........-+++||.+.++
T Consensus 426 ~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~ 466 (735)
T TIGR01062 426 EHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADAT 466 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444444555555555444
No 234
>PRK03918 chromosome segregation protein; Provisional
Probab=37.05 E-value=2.6e+02 Score=36.43 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=4.2
Q ss_pred HHHHHHHhHHH
Q 001754 858 KIQQKYRGWKG 868 (1017)
Q Consensus 858 ~IQk~~Rg~~~ 868 (1017)
.+....|.+..
T Consensus 166 ~~~~~~~~~~~ 176 (880)
T PRK03918 166 NLGEVIKEIKR 176 (880)
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 235
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=36.75 E-value=9.2e+02 Score=29.95 Aligned_cols=63 Identities=5% Similarity=-0.046 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 953 AGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 953 ~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
.+++..+..++... +......+...++++++.++..+..++.++.-|+.+|.++...-..-+|
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~a 325 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMA 325 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444322 3345556666677777777777777777777777777666655444433
No 236
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.44 E-value=7.1e+02 Score=28.59 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 001754 894 QYKKVVWSVSIVEKAILRWRRRGSG 918 (1017)
Q Consensus 894 ~yk~l~~Sv~~lek~i~rwr~kr~~ 918 (1017)
.+..+......+...+-.-+.++..
T Consensus 164 D~~~L~~~~~~l~~~~~~l~~~~~~ 188 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELLPKLRERKAE 188 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 237
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.05 E-value=66 Score=31.05 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 972 RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
.+++..+..++.+.|..+..+..+|..|+-|...|++.|...
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666667777777777777777766544
No 238
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=35.75 E-value=77 Score=35.03 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 938 TDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 938 ~~~~d~L~~~rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
.++.+.++..||++..+..-...|+..|.|..++.+. ....|....++.+++..|++++.++|.++..-
T Consensus 199 ~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdk-------v~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 199 MEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDK-------VKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777666665555555555444433333 34445555556677777777777777766543
No 239
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=35.68 E-value=46 Score=35.12 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHH----HHHhCCCCCCccCCC--CCchh
Q 001754 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMR----PIIATGVSPNFRDAR--GRTAL 682 (1017)
Q Consensus 609 ~~~d~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~AA~~G~~~iVk----~LL~~Gadvn~~D~~--G~TpL 682 (1017)
.....+++.||++...+.+.-. |-+....+ -.+.+-.|.......+.. +++....+-...|.. =.--|
T Consensus 74 ~~~q~LFElAC~~qkydiV~WI----~qnL~i~~--~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl 147 (192)
T PF03158_consen 74 YLNQELFELACEEQKYDIVKWI----GQNLHIYN--PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHL 147 (192)
T ss_pred hHHHHHHHHHHHHccccHHHHH----hhccCCCC--chhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHH
Confidence 4566778888877654322110 22222222 235566777776665532 344443222111111 11357
Q ss_pred hHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001754 683 HWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 683 H~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe 738 (1017)
.+|+..|-...+.-.+++|.+++. ++|..|+..+|..|+.+++.
T Consensus 148 ~~a~~kgll~F~letlkygg~~~~------------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 148 EKAAAKGLLPFVLETLKYGGNVDI------------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHCCCHHHHHHHHHcCCcccH------------HHHHHHHHhhHHHHHHHhhc
Confidence 889999999999999999988875 47888999999999888763
No 240
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=35.35 E-value=2.9e+02 Score=34.13 Aligned_cols=37 Identities=8% Similarity=-0.151 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-------ccCcchHHHHhhhHh
Q 001754 969 PEARDQYMRMVAKFENFKMCDD-------GSGLLSQGEDSLNGP 1005 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~~~-------~~~~~~~~L~~el~~ 1005 (1017)
..+++|.-|+..++..+|..++ ..++.+++|..+|.-
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAF 215 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444444444444444333 344555555555533
No 241
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.20 E-value=1.4e+02 Score=26.54 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 955 VEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 955 ~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
+++.-.+||..+ -+..++-+...++++-.....+....+-..+.|..+..+||++-+++
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666555 45555555555555444444444444555566666666666665554
No 242
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=34.75 E-value=47 Score=29.60 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=34.1
Q ss_pred cHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc
Q 001754 647 GVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL 700 (1017)
Q Consensus 647 TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV~~LL~~ 700 (1017)
..|..|...|+.++++.+++.+ .++ ...|..|+..-+-+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4577888888888888887654 222 3467888888888888888765
No 243
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.41 E-value=75 Score=28.48 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=35.0
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
++..|=+.+..++.+..+.|.+...+..++..|+.+...|+++-.++
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777877777777788888888888888777665
No 244
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.78 E-value=1e+03 Score=29.58 Aligned_cols=28 Identities=7% Similarity=-0.207 Sum_probs=14.8
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001754 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 985 ak~~~~~~~~~~~~L~~el~~lke~l~~ 1012 (1017)
+-+++-...-+..+|+.+|..+..+|+.
T Consensus 323 t~aeLh~aRLe~aql~~qLad~~l~lke 350 (546)
T PF07888_consen 323 TMAELHQARLEAAQLKLQLADASLELKE 350 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3334444455566666666655555543
No 245
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=33.72 E-value=8.7e+02 Score=28.78 Aligned_cols=17 Identities=0% Similarity=0.077 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001754 899 VWSVSIVEKAILRWRRR 915 (1017)
Q Consensus 899 ~~Sv~~lek~i~rwr~k 915 (1017)
...+...|..+..++++
T Consensus 184 ~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 184 REDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555544
No 246
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=33.59 E-value=1.4e+02 Score=34.64 Aligned_cols=36 Identities=14% Similarity=-0.101 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHH
Q 001754 944 LRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMV 979 (1017)
Q Consensus 944 L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~ 979 (1017)
++...++++.++..+...++..- +...|+++|.|.+
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~ 133 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQ 133 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443332 5566777776654
No 247
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.50 E-value=1.5e+02 Score=36.76 Aligned_cols=6 Identities=33% Similarity=1.293 Sum_probs=2.2
Q ss_pred HHHHhh
Q 001754 912 WRRRGS 917 (1017)
Q Consensus 912 wr~kr~ 917 (1017)
|..+..
T Consensus 180 w~~~~~ 185 (555)
T TIGR03545 180 WKKRKK 185 (555)
T ss_pred HHHHHH
Confidence 433333
No 248
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=33.47 E-value=71 Score=35.72 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=2.8
Q ss_pred ceEEEEe
Q 001754 438 LFSIRDF 444 (1017)
Q Consensus 438 ~f~I~d~ 444 (1017)
--+|..+
T Consensus 214 ~~t~Lq~ 220 (348)
T KOG3584|consen 214 GTTILQY 220 (348)
T ss_pred ceeeEee
Confidence 3344443
No 249
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=33.33 E-value=7.2e+02 Score=32.44 Aligned_cols=42 Identities=5% Similarity=0.031 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~ 1009 (1017)
..++++|+..+++++++.+.-++.....+.-+++||.++|++
T Consensus 429 ~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkk 470 (800)
T TIGR01063 429 REKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQ 470 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666655555555555566666665553
No 250
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.19 E-value=1.5e+03 Score=31.44 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhcccccc
Q 001754 852 LHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV---VWSVSIVEKAILRWRRRGSGLRGFRVGNST 928 (1017)
Q Consensus 852 ~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l---~~Sv~~lek~i~rwr~kr~~Lr~~~~e~~~ 928 (1017)
....+-.|...=+--..-........++-.|...+++|.......+. +.+-..++.....-......+...+.+.
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 299 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEE-- 299 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHH--HHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhH
Q 001754 929 ANVASENEKTDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEA--RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPT 1006 (1017)
Q Consensus 929 ~~~~~~~~~~~~~d~L~~~rkq~e~~~~~A~~rVqsm~r~~~A--R~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~l 1006 (1017)
+.++..+..++.+++.+..++..+-.++.. .+++.+++.++++......+.......-++.+.++
T Consensus 300 -------------~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~ 366 (1353)
T TIGR02680 300 -------------RELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEE 366 (1353)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q 001754 1007 KDNLHAY 1013 (1017)
Q Consensus 1007 ke~l~~~ 1013 (1017)
+.+++..
T Consensus 367 ~~~~~~~ 373 (1353)
T TIGR02680 367 RRRLDEE 373 (1353)
T ss_pred HHHHHHH
No 251
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=33.06 E-value=18 Score=31.20 Aligned_cols=8 Identities=75% Similarity=1.514 Sum_probs=5.5
Q ss_pred ccCcccee
Q 001754 70 KDGHRWRK 77 (1017)
Q Consensus 70 ~dg~~w~~ 77 (1017)
.|||.|||
T Consensus 2 ~Dgy~WRK 9 (60)
T PF03106_consen 2 DDGYRWRK 9 (60)
T ss_dssp -SSS-EEE
T ss_pred CCCCchhh
Confidence 49999987
No 252
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.20 E-value=7.7e+02 Score=27.72 Aligned_cols=18 Identities=28% Similarity=-0.031 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001754 942 EFLRIGRKQKFAGVEKAL 959 (1017)
Q Consensus 942 d~L~~~rkq~e~~~~~A~ 959 (1017)
..|++-|.+.+..+.+..
T Consensus 169 ~~L~eiR~~ye~~~~~~~ 186 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNR 186 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhh
Confidence 344444555444333333
No 253
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=31.89 E-value=4.6e+02 Score=30.29 Aligned_cols=31 Identities=16% Similarity=-0.123 Sum_probs=23.6
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 985 ak~~~~~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
++.+++..-..+.+|+.++.+|+.+|+.+-+
T Consensus 287 TRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 287 TRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6667777777888888888888888877644
No 254
>PF12728 HTH_17: Helix-turn-helix domain
Probab=31.78 E-value=34 Score=27.76 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=26.3
Q ss_pred cCChHHHHHHHHccc-cc--ccCCCCCCCCCCCceeeeehhhh-hhh
Q 001754 26 WLRPTEICEILRNYQ-KF--HLTPDPPVRPPAGSLFLFDRKAL-RYF 68 (1017)
Q Consensus 26 w~~~~e~~~~l~~~~-~~--~~~~~~~~~p~~g~~~~~~~~~~-~~~ 68 (1017)
||++.|+|++|.--. .+ .+.....+....|.-++|++..| +|+
T Consensus 1 ~lt~~e~a~~l~is~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~ 47 (51)
T PF12728_consen 1 YLTVKEAAELLGISRSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWL 47 (51)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHH
Confidence 789999999994332 22 13222211223677799999887 443
No 255
>PRK05560 DNA gyrase subunit A; Validated
Probab=31.51 E-value=8.4e+02 Score=31.83 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~ 1009 (1017)
..++++|+..+++++++.+.-++.......-+++||.++|++
T Consensus 432 ~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkk 473 (805)
T PRK05560 432 RDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEK 473 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666665555566666666666554
No 256
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.38 E-value=4.2e+02 Score=36.00 Aligned_cols=67 Identities=9% Similarity=-0.040 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001754 943 FLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 943 ~L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~ 1009 (1017)
.++.....+..+++.+..+|+..- +...++.++..+..++...+..+..++.++..++.++..+..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 317 (1163)
T COG1196 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444432 3333333333333333333334444444444444444444444
No 257
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.13 E-value=40 Score=32.37 Aligned_cols=36 Identities=8% Similarity=-0.082 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001754 973 DQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 973 ~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke 1008 (1017)
..|.+++.++.+++.++.+++.++..|+.++..||.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455666666667777777777777777777777765
No 258
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.01 E-value=4.5e+02 Score=26.45 Aligned_cols=9 Identities=22% Similarity=0.073 Sum_probs=3.8
Q ss_pred hhHhHHHHH
Q 001754 1002 LNGPTKDNL 1010 (1017)
Q Consensus 1002 el~~lke~l 1010 (1017)
|+..||+.|
T Consensus 141 E~~kLk~rL 149 (151)
T PF11559_consen 141 EIEKLKERL 149 (151)
T ss_pred HHHHHHHHh
Confidence 344444443
No 259
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=30.49 E-value=5.8e+02 Score=32.98 Aligned_cols=41 Identities=7% Similarity=-0.045 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke 1008 (1017)
..++++|++.+..++.+.+..|+..+....-++.||.++|+
T Consensus 439 ~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~ 479 (742)
T PRK05561 439 EIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAK 479 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33444555555555544444444444444444444444443
No 260
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.37 E-value=2.2e+02 Score=31.21 Aligned_cols=26 Identities=15% Similarity=-0.045 Sum_probs=10.4
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHH
Q 001754 985 FKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 985 ak~~~~~~~~~~~~L~~el~~lke~l 1010 (1017)
++.+.++.+.....+..++..||+++
T Consensus 72 a~~er~~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 72 AESERNKRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444443
No 261
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=30.33 E-value=8.3e+02 Score=27.52 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 972 RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
.++++.++..+.+.+..+..++.+-..|...+..++-+.+.|
T Consensus 220 Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444445555555555555555555555555554
No 262
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.28 E-value=8.6e+02 Score=31.37 Aligned_cols=141 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc
Q 001754 858 KIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASENEK 937 (1017)
Q Consensus 858 ~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwr~kr~~Lr~~~~e~~~~~~~~~~~~ 937 (1017)
.|=+..+....+++|+.-.+..+ -..+.+-..+..+.-.|+...+.|..++..|-.-..+.+..+ .+.
T Consensus 229 ~vl~ev~QLss~~q~ltp~rk~~--------s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelV----k~~ 296 (1265)
T KOG0976|consen 229 KVLKEVMQLSSQKQTLTPLRKTC--------SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELV----KEL 296 (1265)
T ss_pred HHHHHHHHHHHhHhhhhhHhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHH
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhh-------hHhHHHHH
Q 001754 938 TDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSL-------NGPTKDNL 1010 (1017)
Q Consensus 938 ~~~~d~L~~~rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~e-------l~~lke~l 1010 (1017)
.++.+.++..+.++-.+.+.|...|... ..+..+|...++.++.++|-..+......++|..+ +.++++.+
T Consensus 297 qeeLd~lkqt~t~a~gdseqatkylh~e--nmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k 374 (1265)
T KOG0976|consen 297 QEELDTLKQTRTRADGDSEQATKYLHLE--NMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKK 374 (1265)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HH
Q 001754 1011 HA 1012 (1017)
Q Consensus 1011 ~~ 1012 (1017)
++
T Consensus 375 ~n 376 (1265)
T KOG0976|consen 375 EN 376 (1265)
T ss_pred HH
No 263
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.01 E-value=6.1e+02 Score=28.02 Aligned_cols=20 Identities=5% Similarity=-0.207 Sum_probs=7.9
Q ss_pred hhccCcchHHHHhhhHhHHH
Q 001754 989 DDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 989 ~~~~~~~~~~L~~el~~lke 1008 (1017)
+...+..+..+..++...+.
T Consensus 128 ~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 128 LEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444443333
No 264
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.91 E-value=5.1e+02 Score=34.17 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHh-------hhhhhccCcchHHHHhhhHhHHH
Q 001754 949 KQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENF-------KMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 949 kq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~a-------k~~~~~~~~~~~~L~~el~~lke 1008 (1017)
+.....++.+...+.... +..+.++||+.+...++.. ...+..++.++..|-.+|..||.
T Consensus 491 knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444555444444443 5566677777666554443 33444556666666666666665
No 265
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=29.81 E-value=1.5e+03 Score=30.83 Aligned_cols=37 Identities=5% Similarity=-0.005 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHH
Q 001754 974 QYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 974 qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l 1010 (1017)
+...+..++...+...+.+..++.++...+..+++++
T Consensus 871 ~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 907 (1163)
T COG1196 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEI 907 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444444333
No 266
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.74 E-value=9.1e+02 Score=27.78 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=18.8
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHh
Q 001754 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDS 1001 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~ 1001 (1017)
...+.++|+..+...+++.+.+......++.+++.
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555665555555555555555555555544
No 267
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.39 E-value=2.6e+02 Score=27.64 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHH
Q 001754 941 YEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAK 981 (1017)
Q Consensus 941 ~d~L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e 981 (1017)
.+.|....++.+.++...-..+.... ....|++++-++..+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444 445555555555433
No 268
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=29.13 E-value=4.8e+02 Score=25.12 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHh
Q 001754 941 YEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENF 985 (1017)
Q Consensus 941 ~d~L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~a 985 (1017)
...|++..+..+..++++...+.++. |...+-+....+..++...
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666778888888888888888887 8888888888888887643
No 269
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.49 E-value=9.7e+02 Score=27.70 Aligned_cols=64 Identities=11% Similarity=-0.051 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHH------------HHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 952 FAGVEKALERVKSMV-RNPEARDQYMRMVAKF------------ENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 952 e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~------------~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
...+.....++...- .++.+|.++.+++... +..-..++++...+..|...+.++-++.+.++.
T Consensus 85 ~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 85 KEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVT 161 (319)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443 4555555555554221 112223555555555555555555555555443
No 270
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=28.31 E-value=2.9e+02 Score=29.63 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcHHHHHHHHHHHH----HHHH--------------hhhhhhccCcch
Q 001754 940 EYEFLRIGRKQKFAGVEKALERVKSM-----VRNPEARDQYMRMVA----KFEN--------------FKMCDDGSGLLS 996 (1017)
Q Consensus 940 ~~d~L~~~rkq~e~~~~~A~~rVqsm-----~r~~~AR~qyrrl~~----e~~~--------------ak~~~~~~~~~~ 996 (1017)
|.-.|+..+..++.++.++-...... ......|+||..|+. ++++ .+..++..+.++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 34446666666777766665555541 123567888877762 2322 334455666777
Q ss_pred HHHHhhhHhHHHHHHHh
Q 001754 997 QGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 997 ~~L~~el~~lke~l~~~ 1013 (1017)
+.|..-|..-|++|+.+
T Consensus 177 ~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777777654
No 271
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.20 E-value=2.3e+02 Score=32.50 Aligned_cols=19 Identities=5% Similarity=-0.099 Sum_probs=8.2
Q ss_pred CcchHHHHhhhHhHHHHHH
Q 001754 993 GLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 993 ~~~~~~L~~el~~lke~l~ 1011 (1017)
+.+.+.++.++..+.++|.
T Consensus 112 ~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 112 QEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 272
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.19 E-value=80 Score=36.21 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhH
Q 001754 939 DEYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNG 1004 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~ 1004 (1017)
.+.+.+....++++.+.+++...++.+- ...++.+|.+.+..+.++.+.+-...-.+.+.++.++.
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELI 109 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666666555 45555555555554444333332233333333333333
No 273
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=27.85 E-value=90 Score=39.13 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001754 879 IVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 879 aV~IQa~~Rg~qaRK~yk~l 898 (1017)
|-+||.+||.+.+||+|.++
T Consensus 699 A~~IQkAWRrfv~rrky~k~ 718 (1106)
T KOG0162|consen 699 ARRIQKAWRRFVARRKYEKM 718 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999888
No 274
>smart00338 BRLZ basic region leucin zipper.
Probab=27.72 E-value=1.5e+02 Score=25.47 Aligned_cols=29 Identities=3% Similarity=-0.127 Sum_probs=13.8
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001754 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 985 ak~~~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
.......++.++.+|+.++..|+.++..+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555544433
No 275
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=27.71 E-value=9.5e+02 Score=31.03 Aligned_cols=41 Identities=7% Similarity=-0.102 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001754 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke 1008 (1017)
..++++|+..++.++.+.+.-+........-+++||.++|+
T Consensus 429 ~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~ 469 (738)
T TIGR01061 429 IFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKK 469 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444455555555555444
No 276
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.54 E-value=3.3e+02 Score=27.57 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccC---cchHHHHhhhHhHHHHHH
Q 001754 940 EYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSG---LLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 940 ~~d~L~~~rkq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~---~~~~~L~~el~~lke~l~ 1011 (1017)
..+.+....++++.+..+.-..|.++. +...+..++.++...+..++..++... +.++.|...|..|-++|.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH
Confidence 345556666666666666666666666 666677777777766666555543322 334455555555555544
No 277
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=27.52 E-value=81 Score=28.07 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=39.6
Q ss_pred chhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc
Q 001754 680 TALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 739 (1017)
Q Consensus 680 TpLH~Aa~~G~~eiV~~LL~~GAd~n~~dd~~~~d~~G~TPLhlAa~~G~~~iv~lLLe~ 739 (1017)
.-|..|...|+.++++.+++.+ .++ ...+..|+...+.+++.+|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4679999999999999999765 221 3579999999999999999986
No 278
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.25 E-value=3.4e+02 Score=32.65 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 869 RKDFLKIRNHIVKLQAHVRGHQVRK 893 (1017)
Q Consensus 869 Rk~fl~~R~~aV~IQa~~Rg~qaRK 893 (1017)
|++|+.+...-++.|+++.|+...+
T Consensus 301 ~ek~r~l~~D~nk~~~~~~~mk~K~ 325 (622)
T COG5185 301 REKWRALKSDSNKYENYVNAMKQKS 325 (622)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5556667777888888888876654
No 279
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.05 E-value=5.8e+02 Score=28.08 Aligned_cols=14 Identities=7% Similarity=0.463 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 001754 973 DQYMRMVAKFENFK 986 (1017)
Q Consensus 973 ~qyrrl~~e~~~ak 986 (1017)
++|.+++.+..+.+
T Consensus 88 eey~~Lk~~in~~R 101 (230)
T PF10146_consen 88 EEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555554444433
No 280
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=26.99 E-value=1e+02 Score=29.40 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 943 FLRIGRKQKFAGVEKALERVK----SMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 943 ~L~~~rkq~e~~~~~A~~rVq----sm~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
.+...+.+.+..++.....+- .|| ..||++-..+..+..+++..+......+..|+.+|..||..++
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFeEAN~MV--a~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~ 82 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFEEANKMV--ADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVME 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666555442 333 4455554444444455555566666666666666666665444
No 281
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.83 E-value=1.6e+03 Score=29.82 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 949 KQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 949 kq~e~~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
+++...+.++..+++..+ .-..++++..+.+.+++.+|..-++.++.+...+.++.+++++|+
T Consensus 293 s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 293 SQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334445555666666665 345666666666666666666656666666666666666665554
No 282
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=26.82 E-value=24 Score=30.38 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.9
Q ss_pred ccCcccee
Q 001754 70 KDGHRWRK 77 (1017)
Q Consensus 70 ~dg~~w~~ 77 (1017)
.|||.|||
T Consensus 2 ~DGy~WRK 9 (59)
T smart00774 2 DDGYQWRK 9 (59)
T ss_pred CCcccccc
Confidence 59999987
No 283
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.57 E-value=1.1e+03 Score=29.45 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=22.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001754 857 IKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 857 v~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
...|..|+.|+. .++....+|...|-..+|..|.+.
T Consensus 157 ~~~~~~y~~w~~------~~~~l~~~~~~~~e~~~~~d~L~f 192 (557)
T COG0497 157 EAYQEAYQAWKQ------ARRELEDLQEKERERAQRADLLQF 192 (557)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777764 344555566666777777766443
No 284
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=26.51 E-value=2.5e+02 Score=27.48 Aligned_cols=45 Identities=13% Similarity=-0.008 Sum_probs=29.7
Q ss_pred hcHHHHHHHHHHHHHHHHhhhh----hhccCcchHHHHhhhHhHHHHHH
Q 001754 967 RNPEARDQYMRMVAKFENFKMC----DDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~----~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
|+..-.+-.++-..+++.+... +..+.++.+.|+.|...|+++++
T Consensus 72 RC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eElk 120 (120)
T PF10482_consen 72 RCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEELK 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 5555555555555566544333 55577888888888888888874
No 285
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.31 E-value=1.5e+02 Score=31.40 Aligned_cols=19 Identities=5% Similarity=-0.205 Sum_probs=9.5
Q ss_pred cchHHHHhhhHhHHHHHHH
Q 001754 994 LLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 994 ~~~~~L~~el~~lke~l~~ 1012 (1017)
..++.++.++..+++.+..
T Consensus 135 ~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 286
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=26.28 E-value=6.5e+02 Score=29.68 Aligned_cols=21 Identities=10% Similarity=-0.262 Sum_probs=10.5
Q ss_pred hhccCcchHHHHhhhHhHHHH
Q 001754 989 DDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 989 ~~~~~~~~~~L~~el~~lke~ 1009 (1017)
...++.....|+.+...|+..
T Consensus 174 ~k~LQ~s~~Qlk~~~~~L~~r 194 (499)
T COG4372 174 QKQLQASATQLKSQVLDLKLR 194 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555543
No 287
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=26.09 E-value=5.1e+02 Score=26.02 Aligned_cols=58 Identities=7% Similarity=0.026 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 954 GVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 954 ~~~~A~~rVqsm~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
.+..++.....+. ....++.....++..+.++|..+.....++.+|..+-...++.|+
T Consensus 66 ~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~ 124 (142)
T PF04048_consen 66 GFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIE 124 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3444555555555 677888888888888888888888888888887777666666554
No 288
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.67 E-value=95 Score=32.35 Aligned_cols=15 Identities=0% Similarity=-0.471 Sum_probs=0.4
Q ss_pred hhccCcchHHHHhhh
Q 001754 989 DDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 989 ~~~~~~~~~~L~~el 1003 (1017)
.-.++.|+.|||+||
T Consensus 33 ~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 33 VQRLKDELRDLKQEL 47 (166)
T ss_dssp H--------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 289
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.57 E-value=2.4e+02 Score=35.66 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=4.0
Q ss_pred HHHHHHhHHH
Q 001754 859 IQQKYRGWKG 868 (1017)
Q Consensus 859 IQk~~Rg~~~ 868 (1017)
|...++|-..
T Consensus 171 l~~Ai~~LlG 180 (650)
T TIGR03185 171 LKEAIEVLLG 180 (650)
T ss_pred HHHHHHHHhC
Confidence 3334444443
No 290
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.94 E-value=3.5e+02 Score=31.31 Aligned_cols=37 Identities=5% Similarity=-0.009 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhh-hhccCcchHHHHhhhHhHHH
Q 001754 972 RDQYMRMVAKFENFKMC-DDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~-~~~~~~~~~~L~~el~~lke 1008 (1017)
|++++.++..++..+.. ..+..+.+++|+.+++..+.
T Consensus 45 kkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 45 KKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh
Confidence 33444444444444332 22334455555555555443
No 291
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.50 E-value=62 Score=27.22 Aligned_cols=25 Identities=0% Similarity=-0.371 Sum_probs=15.1
Q ss_pred HHhhhhhhccCcchHHHHhhhHhHH
Q 001754 983 ENFKMCDDGSGLLSQGEDSLNGPTK 1007 (1017)
Q Consensus 983 ~~ak~~~~~~~~~~~~L~~el~~lk 1007 (1017)
..|+..+.+++.+|..|+.+|.-++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666665443
No 292
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=24.49 E-value=1.1e+02 Score=36.28 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001754 877 NHIVKLQAHVRGHQVRKQYKKV-VWS 901 (1017)
Q Consensus 877 ~~aV~IQa~~Rg~qaRK~yk~l-~~S 901 (1017)
++|+.||..+|+++||.+.+.. .|.
T Consensus 18 kaAilIQkWYRr~~ARle~rrr~twq 43 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEARRRCTWQ 43 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4889999999999999988766 444
No 293
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=24.41 E-value=4e+02 Score=28.42 Aligned_cols=37 Identities=11% Similarity=-0.055 Sum_probs=21.7
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001754 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el 1003 (1017)
+...+|.|...|..+-+.++..|.+++..+..|..+.
T Consensus 148 ~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 148 RQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666665555555555554443
No 294
>PRK06835 DNA replication protein DnaC; Validated
Probab=24.38 E-value=3e+02 Score=31.80 Aligned_cols=45 Identities=4% Similarity=-0.071 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc---CcchHHHHhhhHhHHHHHHHhhh
Q 001754 969 PEARDQYMRMVAKFENFKMCDDGS---GLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~~~~~---~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
.+..++..++ -++.+++.+... +..+++|+.++..|+++.+++++
T Consensus 39 ~~id~~i~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~ 86 (329)
T PRK06835 39 AEIDDEIAKL--GIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLV 86 (329)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 445677777554 78899999999999999988775
No 295
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.94 E-value=2.2e+02 Score=29.02 Aligned_cols=46 Identities=4% Similarity=-0.056 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh-------hhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 969 PEARDQYMRMVAKFENFKMC-------DDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~-------~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
..+|+++...+.|++..-+. +.++..|+.+|+.+|.+++.+...-+
T Consensus 64 ~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 64 SALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666555666543222 44555666666666666655554433
No 296
>PRK03918 chromosome segregation protein; Provisional
Probab=23.90 E-value=6.1e+02 Score=33.04 Aligned_cols=6 Identities=17% Similarity=1.010 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001754 973 DQYMRM 978 (1017)
Q Consensus 973 ~qyrrl 978 (1017)
.++..+
T Consensus 666 ~~~~~l 671 (880)
T PRK03918 666 EEYLEL 671 (880)
T ss_pred HHHHHH
Confidence 333333
No 297
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.85 E-value=1.2e+02 Score=26.13 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=21.4
Q ss_pred HHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 980 AKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 980 ~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
..+.....+...+..++..|+.++.+|+.++|
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555555666777788888888777765
No 298
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=23.55 E-value=4.2e+02 Score=30.02 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=21.1
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
+.+.|..++..+++..+++..-.++...++++.-.+++.+|++++
T Consensus 281 ~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 281 KFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444455555555544
No 299
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.33 E-value=2e+02 Score=35.66 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 001754 899 VWSVSIVEKAILRWRRRGSGLRGFRVGN 926 (1017)
Q Consensus 899 ~~Sv~~lek~i~rwr~kr~~Lr~~~~e~ 926 (1017)
+.++...|+.-..|..++........+.
T Consensus 160 L~T~~~~~~~~~~~k~~~~~w~~~~~~L 187 (555)
T TIGR03545 160 LKTVETAEEIEKSLKAMQQKWKKRKKDL 187 (555)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555554444443
No 300
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.32 E-value=1.4e+03 Score=27.76 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 001754 851 YLHFAAIKIQQKYRGWKGRKD 871 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~ 871 (1017)
.++.|-..+|+...--+.-|+
T Consensus 394 nLqe~la~tqk~LqEsr~eKe 414 (527)
T PF15066_consen 394 NLQEALANTQKHLQESRNEKE 414 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 355677778887766554444
No 301
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.16 E-value=9.2e+02 Score=29.93 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhh-----hhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHH
Q 001754 948 RKQKFAGVEKALERVKSM-----VRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqsm-----~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l 1010 (1017)
|+..+..+++-+.+|+.. +-...+|+++++++..+...++.+..+++.+..|..++..|+-+|
T Consensus 266 R~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql 333 (546)
T KOG0977|consen 266 RKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQL 333 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhh
Confidence 444444444444444421 146678899999997777777777777766666666666665554
No 302
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=22.99 E-value=1.6e+02 Score=33.97 Aligned_cols=25 Identities=0% Similarity=-0.203 Sum_probs=10.6
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHH
Q 001754 985 FKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 985 ak~~~~~~~~~~~~L~~el~~lke~ 1009 (1017)
++.....++.++.+|++.|.+++.+
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3333444444444444444444433
No 303
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.81 E-value=1e+03 Score=25.98 Aligned_cols=12 Identities=0% Similarity=-0.415 Sum_probs=4.4
Q ss_pred cCcchHHHHhhh
Q 001754 992 SGLLSQGEDSLN 1003 (1017)
Q Consensus 992 ~~~~~~~L~~el 1003 (1017)
++..+..|..+|
T Consensus 202 Le~~id~le~eL 213 (237)
T PF00261_consen 202 LEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 304
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.59 E-value=2.9e+02 Score=25.72 Aligned_cols=59 Identities=17% Similarity=0.035 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001754 942 EFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 942 d~L~~~rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el 1003 (1017)
|-+.+...+...+++..-.++....=.+++|+.+. .|+...+..+...+.++..|+.|.
T Consensus 8 d~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE---~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLE---KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH---HHHHHHHHHhhccHHHHHHHHHhh
Confidence 44555566666666666666665555777777765 456667777777777777777754
No 305
>PRK02224 chromosome segregation protein; Provisional
Probab=22.46 E-value=1.4e+03 Score=29.89 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccc
Q 001754 868 GRKDFLKIRNHIVKLQAHVRGHQV------------RKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASEN 935 (1017)
Q Consensus 868 ~Rk~fl~~R~~aV~IQa~~Rg~qa------------RK~yk~l~~Sv~~lek~i~rwr~kr~~Lr~~~~e~~~~~~~~~~ 935 (1017)
....+..++..+-.+++....+.. ..++..+...+.-++..+.+-...+.-...+..-.....
T Consensus 535 ~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~i~~~~~~~~----- 609 (880)
T PRK02224 535 KRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIE----- 609 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhh-----h-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001754 936 EKTDEYEFLRIGRKQKFAGVEKALERVKSM-----V-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 936 ~~~~~~d~L~~~rkq~e~~~~~A~~rVqsm-----~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~ 1009 (1017)
....+.+.++..+.+...+++..-.+|... . +...++++|.++...+...+..++..+.....+..+++.++..
T Consensus 610 ~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~ 689 (880)
T PRK02224 610 RLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE 689 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 001754 1010 LHAY 1013 (1017)
Q Consensus 1010 l~~~ 1013 (1017)
++.+
T Consensus 690 ~e~~ 693 (880)
T PRK02224 690 LEEL 693 (880)
T ss_pred HHHH
No 306
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=22.43 E-value=1.2e+03 Score=26.71 Aligned_cols=77 Identities=18% Similarity=0.098 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH-----HHHHHhhhhhhccCc-------chHHHHhhhHhH
Q 001754 939 DEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMV-----AKFENFKMCDDGSGL-------LSQGEDSLNGPT 1006 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl~-----~e~~~ak~~~~~~~~-------~~~~L~~el~~l 1006 (1017)
.+...|.+..+....+++.--.-+..+.+...+..+|...+ ..+.+.+........ .+..+..+-..|
T Consensus 135 ~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~L 214 (309)
T PF09728_consen 135 EENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKEL 214 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444333333444444444444443333 222222233333333 888888888999
Q ss_pred HHHHHHhhh
Q 001754 1007 KDNLHAYVA 1015 (1017)
Q Consensus 1007 ke~l~~~~~ 1015 (1017)
+++|..|+.
T Consensus 215 r~QL~~Y~~ 223 (309)
T PF09728_consen 215 REQLNLYSE 223 (309)
T ss_pred HHHHHHHHH
Confidence 999998875
No 307
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.37 E-value=4.7e+02 Score=27.30 Aligned_cols=43 Identities=7% Similarity=-0.000 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 970 EARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 970 ~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
+.|++...+..++.+ ...+...++.+|+.+++++|-++=.|+.
T Consensus 117 ~~r~e~~~~~~ki~e---~~~ki~~ei~~lr~~iE~~K~~~lr~~~ 159 (177)
T PF07798_consen 117 RIREEQAKQELKIQE---LNNKIDTEIANLRTEIESLKWDTLRWLV 159 (177)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444333 3445667788999999999988877753
No 308
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.37 E-value=9.3e+02 Score=25.65 Aligned_cols=45 Identities=9% Similarity=-0.104 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 971 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 971 AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
++++...+..+.+....++..+++..+.++.++..++-+-+.-+|
T Consensus 143 l~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~a 187 (190)
T PF05266_consen 143 LQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVAA 187 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444555566667777777777777777666555443
No 309
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.85 E-value=5.3e+02 Score=32.38 Aligned_cols=30 Identities=7% Similarity=-0.203 Sum_probs=21.7
Q ss_pred HHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001754 983 ENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 983 ~~ak~~~~~~~~~~~~L~~el~~lke~l~~ 1012 (1017)
++.|+++.+.......|+.++..+..+|++
T Consensus 501 ~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 501 RKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777777777777765
No 310
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.75 E-value=1.2e+02 Score=26.68 Aligned_cols=26 Identities=0% Similarity=-0.211 Sum_probs=12.3
Q ss_pred HHHHhhhhhhccCcchHHHHhhhHhH
Q 001754 981 KFENFKMCDDGSGLLSQGEDSLNGPT 1006 (1017)
Q Consensus 981 e~~~ak~~~~~~~~~~~~L~~el~~l 1006 (1017)
++.+.+.+++.++.++.+|+.++..+
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555555555544
No 311
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=21.68 E-value=3.2e+02 Score=29.89 Aligned_cols=25 Identities=4% Similarity=-0.160 Sum_probs=14.1
Q ss_pred hhccCcchHHHHhhhHhHHHHHHHh
Q 001754 989 DDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 989 ~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
...++.....|..+|.+|+.+++++
T Consensus 223 ~seLq~r~~~l~~~L~~L~~e~~r~ 247 (289)
T COG4985 223 KSELQKRLAQLQTELDALRAELERQ 247 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3445555555666666666666553
No 312
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.64 E-value=1.7e+02 Score=30.13 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhhh--hhccCcchHHHHhhhHhHHHHHHHh
Q 001754 972 RDQYMRMVAKFENFKMC--DDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~--~~~~~~~~~~L~~el~~lke~l~~~ 1013 (1017)
+.+++.+..++...... .+.+...+..|+.++..+.+.|+.|
T Consensus 92 ~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 92 KKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333 2334444555555555555555444
No 313
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.61 E-value=1.1e+02 Score=24.98 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001754 969 PEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el 1003 (1017)
..++..|..++.+....+.+.+.+..++..|+..+
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556666665555555566666666666554
No 314
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.51 E-value=1e+03 Score=29.61 Aligned_cols=42 Identities=10% Similarity=-0.087 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 973 DQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 973 ~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
.++++|..|.++.+..+.+.+.+.+.|.+++..++-+++++.
T Consensus 332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f 373 (581)
T KOG0995|consen 332 EDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFF 373 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 446677777778888899999999999999999999888764
No 315
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=21.17 E-value=3.9e+02 Score=29.57 Aligned_cols=31 Identities=6% Similarity=0.071 Sum_probs=17.6
Q ss_pred HHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 981 KFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 981 e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
++.+++..+.++++.++.|+-|+...|+.++
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666666655555543
No 316
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=21.03 E-value=1.8e+03 Score=28.29 Aligned_cols=46 Identities=4% Similarity=-0.135 Sum_probs=21.6
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001754 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~ 1012 (1017)
....+.+.|+.++.++.........+.+.+.-+...++.+.+++++
T Consensus 490 e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~ 535 (698)
T KOG0978|consen 490 ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERG 535 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554443333333444444444444444444443
No 317
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.97 E-value=1.8e+02 Score=28.38 Aligned_cols=37 Identities=8% Similarity=-0.083 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 975 YMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 975 yrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
+..+..++.+.|..+..+..+|..|+-|...|++.|.
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555555554444
No 318
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=20.93 E-value=6.3e+02 Score=33.67 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=9.1
Q ss_pred EEeecCCCCCcee
Q 001754 494 IRCQAPSHAAGRV 506 (1017)
Q Consensus 494 LrC~~Pph~pG~V 506 (1017)
+-|..|||.|+-|
T Consensus 183 ~aT~Ipphnl~ev 195 (957)
T PRK13979 183 LATNIPPHNLKEV 195 (957)
T ss_pred eecCCCCCCHHHH
Confidence 5677778777655
No 319
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=20.92 E-value=1.7e+03 Score=27.79 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=13.6
Q ss_pred cchHHHHhhhHhHHHHHHHh
Q 001754 994 LLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 994 ~~~~~L~~el~~lke~l~~~ 1013 (1017)
.-...|+.++..+|+.|+.-
T Consensus 150 ~i~~~Lk~e~~~lr~~L~~~ 169 (593)
T PF06248_consen 150 KILKLLKDEYSELRENLQYQ 169 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777653
No 320
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.83 E-value=2.3e+02 Score=29.19 Aligned_cols=18 Identities=0% Similarity=-0.348 Sum_probs=7.1
Q ss_pred hhccCcchHHHHhhhHhH
Q 001754 989 DDGSGLLSQGEDSLNGPT 1006 (1017)
Q Consensus 989 ~~~~~~~~~~L~~el~~l 1006 (1017)
+..++.++..|...|..+
T Consensus 118 i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 118 IEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444333
No 321
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.76 E-value=1.1e+03 Score=28.89 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001754 869 RKDFLKIRNHIVKLQAHVRG 888 (1017)
Q Consensus 869 Rk~fl~~R~~aV~IQa~~Rg 888 (1017)
+..|....+.+-.+++.+..
T Consensus 173 k~~~~e~~~~i~~l~~~i~~ 192 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDH 192 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 322
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=20.36 E-value=1.1e+03 Score=28.44 Aligned_cols=14 Identities=7% Similarity=0.321 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 001754 902 VSIVEKAILRWRRR 915 (1017)
Q Consensus 902 v~~lek~i~rwr~k 915 (1017)
+...|+.+..++.+
T Consensus 177 L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 177 LEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHh
Confidence 34445555555443
No 323
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=20.30 E-value=1.4e+02 Score=31.76 Aligned_cols=92 Identities=10% Similarity=-0.092 Sum_probs=46.3
Q ss_pred CCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHH----HHHHHcCCCCCCCCCCCCCCCCCCCH
Q 001754 645 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV----IMLVKLGAAPGAVEDPTPAFPGGQTA 720 (1017)
Q Consensus 645 G~TpLH~AA~~G~~~iVk~LL~~Gadvn~~D~~G~TpLH~Aa~~G~~eiV----~~LL~~GAd~n~~dd~~~~d~~G~TP 720 (1017)
.++.+-+||...+.++|+++- -++...+ -.+-.-.|.......+. .+++++...-...+ + +.--.--
T Consensus 76 ~q~LFElAC~~qkydiV~WI~---qnL~i~~--~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d---~-~~ll~~h 146 (192)
T PF03158_consen 76 NQELFELACEEQKYDIVKWIG---QNLHIYN--PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNED---P-TSLLTQH 146 (192)
T ss_pred HHHHHHHHHHHccccHHHHHh---hccCCCC--chhhhhhhhhccchhHHHHHHHHHHhhcccccccC---H-HHHHHHH
Confidence 456667777777777777762 2222211 12344455555554432 23333322211111 0 0001123
Q ss_pred HHHHHhcCcHHHHHHHHHccCCCCC
Q 001754 721 ADLASSRGHKGIAGYLAEADLSSHL 745 (1017)
Q Consensus 721 LhlAa~~G~~~iv~lLLe~Ga~~~~ 745 (1017)
|..|+..|....+.-.++.|-+.+.
T Consensus 147 l~~a~~kgll~F~letlkygg~~~~ 171 (192)
T PF03158_consen 147 LEKAAAKGLLPFVLETLKYGGNVDI 171 (192)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccH
Confidence 5677777777777777777766664
No 324
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.28 E-value=1.4e+03 Score=26.48 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001754 894 QYKKVVWSVSIVEKAILRWRRRG 916 (1017)
Q Consensus 894 ~yk~l~~Sv~~lek~i~rwr~kr 916 (1017)
+.......+...|..+..|+.+.
T Consensus 178 ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 178 EVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333444444555555555443
No 325
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.13 E-value=1.6e+03 Score=27.30 Aligned_cols=38 Identities=16% Similarity=-0.007 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001754 974 QYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 974 qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~ 1011 (1017)
+++.|..|-++.-.++++...+.++|..++++.+-+.+
T Consensus 369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 369 QFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 33444444444444444444445555555444444433
No 326
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=20.12 E-value=1.7e+03 Score=31.79 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHH
Q 001754 899 VWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASENEKTDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRM 978 (1017)
Q Consensus 899 ~~Sv~~lek~i~rwr~kr~~Lr~~~~e~~~~~~~~~~~~~~~~d~L~~~rkq~e~~~~~A~~rVqsm~r~~~AR~qyrrl 978 (1017)
...+..|+--.-+|+.++..|..-.... ...+|.-|+..-.+++..+...-..+ .++...+.++
T Consensus 1277 ~ael~~l~~e~~~wK~R~q~L~~k~k~~----------d~~~~~kL~~ei~~Lk~el~~ke~~~------~el~~~~~~~ 1340 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQRNQDLLEKYKDS----------DKNDYEKLKSEISRLKEELEEKENLI------AELKKELNRL 1340 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC----------CHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 4455668888889999988886443332 23455555554444444443222222 2223334444
Q ss_pred HHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001754 979 VAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 979 ~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~~ 1015 (1017)
+ +.+|..++.+.++...+..++.+++....+|.+
T Consensus 1341 q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~ 1374 (1822)
T KOG4674|consen 1341 Q---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAA 1374 (1822)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344445555555555555555555555555443
No 327
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.07 E-value=2.9e+02 Score=28.67 Aligned_cols=40 Identities=8% Similarity=-0.031 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001754 975 YMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 975 yrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~~~ 1014 (1017)
...+..+.+..+.++.+++..+..|..++..|+.++..+-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666677777777777777777777766653
No 328
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=20.06 E-value=1.4e+03 Score=27.61 Aligned_cols=41 Identities=7% Similarity=0.110 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001754 972 RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~~~~~~~~~~~L~~el~~lke~l~~ 1012 (1017)
+.+..+++.|+.+.+.+++.+++...+.+....-.+++|++
T Consensus 404 ~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~~eL~~ 444 (445)
T cd00187 404 KLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDE 444 (445)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 33444444555555555555555554445555555555554
Done!