Query 001754
Match_columns 1017
No_of_seqs 638 out of 4256
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 16:44:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001754.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1051-1055//hhsearch_pdb/001754hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxk_A Camta1, calmodulin bind 1.0 1 1 181.8 10.0 90 436-531 4-93 (95)
2 4gpm_A Engineered protein OR26 1.0 1 1 175.6 19.0 150 614-776 7-160 (169)
3 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 175.3 13.6 92 799-898 768-861 (1080)
4 4b93_B Ankyrin repeat domain-c 1.0 1 1 169.7 15.9 158 612-781 53-215 (269)
5 4b93_B Ankyrin repeat domain-c 1.0 1 1 168.1 11.2 144 609-765 84-227 (269)
6 4gpm_A Engineered protein OR26 1.0 1 1 166.0 14.1 128 609-743 35-162 (169)
7 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 161.7 20.2 145 609-765 22-166 (351)
8 1oy3_D Transcription factor in 1.0 1 1 161.3 16.6 157 612-780 46-254 (282)
9 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 161.2 15.0 131 612-749 133-272 (497)
10 3ljn_A Hypothetical protein; a 1.0 1 1 161.2 17.6 123 641-775 134-267 (364)
No 1
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=1.00 E-value=1 Score=181.83 Aligned_cols=90 Identities=33% Similarity=0.700 Sum_probs=82.9
Q ss_pred CCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCEECCEEEEECCEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 79618897605853369963999980278987779998459973990022066427758943589998301089961897
Q 001754 436 EQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNR 515 (1017)
Q Consensus 436 ~q~f~I~dvsP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvL~C~~Pph~pG~Vpl~Vt~~n~ 515 (1017)
.-.+.|+||+|+|||.+|||||+|+|.||.. ..+|.||||+++||++++++|+|+|++|||.||.|+|+|+++++
T Consensus 4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~-----gs~~~~~fG~~~vpa~~~s~~vl~C~tPp~~~G~v~~~v~~d~~ 78 (95)
T 2cxk_A 4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQEA-----SNNYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQ 78 (95)
T ss_dssp -CCSCCCEEECSEECTTCCCEEEEESSCCCC-----SSCEEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEETTE
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCCC-----CCCEEEEECCEEEEEEEEECCEEEEEECCCCCCEEEEEEEECCE
T ss_conf 8847988978785447999999999378789-----96289999999776899679999999558887268699999990
Q ss_pred CCCCCCEEEEEECCCC
Q ss_conf 4467511245405988
Q 001754 516 LACSEVREFEYREKPS 531 (1017)
Q Consensus 516 ~~cSEv~~FEyr~~~~ 531 (1017)
.. |+.++|||++.+.
T Consensus 79 ~~-s~~~~FeY~~~Pt 93 (95)
T 2cxk_A 79 II-SNSVVFEYKSGPS 93 (95)
T ss_dssp EC-SCCEEEEECCC--
T ss_pred EC-CCCEEEEEECCCC
T ss_conf 34-8863889867998
No 2
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=175.59 Aligned_cols=150 Identities=26% Similarity=0.346 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Q ss_conf 99999985289999999993999998558999829999999299544799884899987447899855668883199999
Q 001754 614 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREET 693 (1017)
Q Consensus 614 ll~~al~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ei 693 (1017)
.|..+++.+..+ +++.|++.|+++|.+|..|+||||+|+..++..+++.|+..|++++.+|..|+||||+|+..|+.++
T Consensus 7 ~L~~Aa~~G~~~-~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 7 RLIEAAENGNKD-RVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHHH
T ss_conf 999999958999-9999998789988849998989999998499999999983153113303579999999999397999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH----HHHHH
Q ss_conf 99999749999997899999999998999999639299999999806888876786555765034999975----99999
Q 001754 694 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA----EKANE 769 (1017)
Q Consensus 694 V~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~LLe~Ga~~~l~~l~l~d~~~G~Taa~ia~----~~~ve 769 (1017)
+++|++.|++++.++ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++++. .++++
T Consensus 86 v~~Ll~~gadvn~~d------~~G~TpLh~A~~~g~~~~v~~Ll~~g-----ad~~~~d~~-G~TpL~~A~~~g~~~iv~ 153 (169)
T 4gpm_A 86 VKLLISKGADVNAKD------SDGRTPLHHAAENGHKEVVKLLISKG-----ADVNTSDSD-GRTPLDLAREHGNEEVVK 153 (169)
T ss_dssp HHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTT-SCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHCCCHHHHH
T ss_conf 999998769999879------99998999999859899999999869-----974156999-999999999868999999
Q ss_pred HHHHCCC
Q ss_conf 9998198
Q 001754 770 TAAQIGV 776 (1017)
Q Consensus 770 ~L~e~~a 776 (1017)
.|++.+|
T Consensus 154 ~Ll~~GA 160 (169)
T 4gpm_A 154 LLEKQGG 160 (169)
T ss_dssp HHHTC--
T ss_pred HHHHCCC
T ss_conf 9998799
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=175.32 Aligned_cols=92 Identities=24% Similarity=0.224 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999997866664300368825589999997000111111010-677-99999999999977699999999999
Q 001754 799 AHAAALIQQAFRVRSFRHRQSIQSSDDVSEVSVDLVALGSLNKVSKMIH-FED-YLHFAAIKIQQKYRGWKGRKDFLKIR 876 (1017)
Q Consensus 799 ~~AA~~IQ~~FR~~~~R~r~L~~~~~~~~~~~~~ila~q~~~k~~~~~~-~~~-~~~~AAi~IQk~~Rg~~~Rk~fl~~R 876 (1017)
..++..||+.||+|..|+++ .....+++.+|..+|+..+++ +.. +...||+.||+.||||++||.|..+|
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~--------~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr 839 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKY--------MRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMR 839 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87777888887788999985--------0127789999999999887620221220046777878875499999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999878779999999999
Q 001754 877 NHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 877 ~~vV~IQa~~RG~~aRK~yk~l 898 (1017)
.++++||++|||+++|++|+.+
T Consensus 840 ~aai~IQs~~Rg~laRr~~~~l 861 (1080)
T 2dfs_A 840 DATIALQALLRGYLVRNKYQMM 861 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8889999999889999999999
No 4
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=169.66 Aligned_cols=158 Identities=22% Similarity=0.204 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_conf 89999999852899999999939999985589998299999992995447998848999874478998556688831999
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ 691 (1017)
.++++.+........++..|++.|+++|..|..|+||||+|+..|+.+++++|+..|++++.++..|.||+|+|+..++.
T Consensus 53 ~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~ 132 (269)
T 4b93_B 53 CHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF 132 (269)
T ss_dssp ----------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 78999999849989999999987999887699999999999984969999999865998675578999833000012729
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH----HHHH
Q ss_conf 999999974999999789999999999899999963929999999980688887678655576503499997----5999
Q 001754 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKA 767 (1017)
Q Consensus 692 eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~LLe~Ga~~~l~~l~l~d~~~G~Taa~ia----~~~~ 767 (1017)
+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.||++.+ ..+.
T Consensus 133 ~~~~~Ll~~g~~~n~~d------~~g~TpL~~A~~~g~~~~v~~Ll~~g-----advn~~~~~-g~t~Lh~A~~~g~~~~ 200 (269)
T 4b93_B 133 QVVKCLLDSNAKPNKKD------LSGNTPLIYACSGGHHELVALLLQHG-----ASINASNNK-GNTALHEAVIEKHVFV 200 (269)
T ss_dssp HHHHHHHHTTCCSCCCC------TTCCCHHHHHHHTTCGGGHHHHHHTT-----CCTTCBCTT-SCBHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHCCCHHH
T ss_conf 99999998799988778------99999999999878999999999787-----997832147-8838999998688999
Q ss_pred HHHHHHCCC-CCCCC
Q ss_conf 999998198-78998
Q 001754 768 NETAAQIGV-QSDGP 781 (1017)
Q Consensus 768 ve~L~e~~a-~~~~~ 781 (1017)
++.|++.++ ++..+
T Consensus 201 v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 201 VELLLLHGASVQVLN 215 (269)
T ss_dssp HHHHHHTTCCSCCCC
T ss_pred HHHHHHCCCCCCCCC
T ss_conf 999998788998869
No 5
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=168.14 Aligned_cols=144 Identities=21% Similarity=0.197 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 45789999999852899999999939999985589998299999992995447998848999874478998556688831
Q 001754 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 609 ~~~~~ll~~al~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~ 688 (1017)
....++|+.++..+.. -+++.|++.|++++..+..|.||+|+|+..++..++++|+..|+++|.+|..|+||||+||..
T Consensus 84 ~~G~TpLh~A~~~g~~-~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 84 QDGSSPLHVAALHGRA-DLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TTSCCHHHHHHHTTCT-THHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred CCCCCHHHHHHHCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 9999999999984969-999999865998675578999833000012729999999987999887789999999999987
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999997499999978999999999989999996392999999998068888767865557650349999759
Q 001754 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 689 G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~LLe~Ga~~~l~~l~l~d~~~G~Taa~ia~~ 765 (1017)
|+.++|++|++.|++++..+ ..|.||||+|+..|+.+++++|++.| +++++++.. |.||++++..
T Consensus 163 g~~~~v~~Ll~~gadvn~~~------~~g~t~Lh~A~~~g~~~~v~~Ll~~G-----ad~~~~d~~-G~TpL~~A~~ 227 (269)
T 4b93_B 163 GHHELVALLLQHGASINASN------NKGNTALHEAVIEKHVFVVELLLLHG-----ASVQVLNKR-QRTAVDCAEQ 227 (269)
T ss_dssp TCGGGHHHHHHTTCCTTCBC------TTSCBHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCTT-SCCSGGGSCT
T ss_pred CCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHH
T ss_conf 89999999997879978321------47883899999868899999999878-----899886999-9999999883
No 6
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=166.02 Aligned_cols=128 Identities=26% Similarity=0.326 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 45789999999852899999999939999985589998299999992995447998848999874478998556688831
Q 001754 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 609 ~~~~~ll~~al~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~ 688 (1017)
....++++.++..+.. .++..+++.|++++.+|..|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..
T Consensus 35 ~~g~t~l~~a~~~~~~-~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~ 113 (169)
T 4gpm_A 35 SDGRTPLHHAAENGHK-EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 113 (169)
T ss_dssp TTSCCHHHHHHHTTCH-HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCCHHHHHHHCCCH-HHHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 9989899999984999-999999831531133035799999999993979999999987699998799999899999985
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 9999999999749999997899999999998999999639299999999806888
Q 001754 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSS 743 (1017)
Q Consensus 689 G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~LLe~Ga~~ 743 (1017)
|+.++|++|++.|++++..+ ..|.|||++|+..|+.+++++|+++|++.
T Consensus 114 g~~~~v~~Ll~~gad~~~~d------~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 114 GHKEVVKLLISKGADVNTSD------SDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred CCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 98999999998699741569------99999999999868999999999879990
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=161.71 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 45789999999852899999999939999985589998299999992995447998848999874478998556688831
Q 001754 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 609 ~~~~~ll~~al~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~ 688 (1017)
......++.++..+..+.+...+...+.+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 32400599999839989999999864888655799998899999985999999999976999976179998089999977
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999997499999978999999999989999996392999999998068888767865557650349999759
Q 001754 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 689 G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~LLe~Ga~~~l~~l~l~d~~~G~Taa~ia~~ 765 (1017)
|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.| .+++..+.. |.++.+.+..
T Consensus 102 g~~~iv~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~-g~~~l~~a~~ 166 (351)
T 3utm_A 102 GHYEVTELLLKHGACVNAMD------LWQFTPLHEAASKNRVEVCSLLLSHG-----ADPTLVNCH-GKSAVDMAPT 166 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCC------TTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTT-SCCHHHHCSS
T ss_pred CCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCCHHHHHH
T ss_conf 88999999997799999778------88998999999749999999999769-----998633678-9862377753
No 8
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=1.00 E-value=1 Score=161.31 Aligned_cols=157 Identities=20% Similarity=0.173 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---------------------
Q ss_conf 89999999852899999999939999985589998299999992995447998848999---------------------
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVS--------------------- 670 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gad--------------------- 670 (1017)
.++++.++..+.. -+++.|++.|++++..|..|.||||+|+..|+.+++++|+..|++
T Consensus 46 ~t~L~~A~~~g~~-~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (282)
T 1oy3_D 46 QTALHLAAILGEA-STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124 (282)
T ss_dssp CCHHHHHHHHTCH-HHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------
T ss_pred CCHHHHHHHCCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHH
T ss_conf 8799999986999-999999986999887798999999999873884055764234777722467777523434585011
Q ss_pred --------------------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf --------------------------874478998556688831999999999974999999789999999999899999
Q 001754 671 --------------------------PNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 724 (1017)
Q Consensus 671 --------------------------vn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlA 724 (1017)
++.++..|+||||+|+..|+.+++++|++.|++++..++ ..|.||||+|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~~g~tpL~~A 199 (282)
T 1oy3_D 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP-----TCGRTPLHLA 199 (282)
T ss_dssp -------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-----TTCCCHHHHH
T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-----CCCCCHHHHH
T ss_conf 00222013565300000233555405777678996899999974999999999983898788887-----7896899999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHHCCC-CCCC
Q ss_conf 963929999999980688887678655576503499997----5999999998198-7899
Q 001754 725 SSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQIGV-QSDG 780 (1017)
Q Consensus 725 a~~Gh~~iv~~LLe~Ga~~~l~~l~l~d~~~G~Taa~ia----~~~~ve~L~e~~a-~~~~ 780 (1017)
+..|+.+++++|++.| ++++.++.. |.||++.+ ..+.++.|+++++ +...
T Consensus 200 ~~~~~~~~v~~Ll~~g-----ad~~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 254 (282)
T 1oy3_D 200 VEAQAASVLELLLKAG-----ADPTARMYG-GRTPLGSALLRPNPILARLLRAHGAPEPED 254 (282)
T ss_dssp HHTTCHHHHHHHHHTT-----CCTTCCCTT-SCCHHHHHHTSSCHHHHHHHHHTTCCCCCC
T ss_pred HHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHCCCCHHHHHHHHCCCCCCCC
T ss_conf 8839899999999759-----998664469-997899999849917999999849985767
No 9
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=161.18 Aligned_cols=131 Identities=25% Similarity=0.271 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCCHHHHHHH---CCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 899999998528999999999399999855------8999829999999---2995447998848999874478998556
Q 001754 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVI------DDGGQGVVHLAAA---LGYEWAMRPIIATGVSPNFRDARGRTAL 682 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Li~~Lle~Ga~in~~------D~~G~TpLHlAA~---~G~~~~V~~LL~~Gadvn~~D~~G~TPL 682 (1017)
...|+.++..+..+. +..|++.|+++|.. |..|.||||+|+. .|+.+++++|+..|+++|.+|..|+|||
T Consensus 133 ~~~L~~A~~~g~~~~-v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLS-VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHH-HHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred HHHHHHHHHCCCHHH-HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 899999886358999-9999860665357777754345550588999986015647999999974999776089999599
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 6888319999999999749999997899999999998999999639299999999806888876786
Q 001754 683 HWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLT 749 (1017)
Q Consensus 683 H~Aa~~G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~LLe~Ga~~~l~~l~ 749 (1017)
|+||..|+.++|++|+++||+++..+ ..|.||||+|+..|+.+++++|+++|++.....+.
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d------~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h 272 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVN------EAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCC------TTCCCHHHHHHHTTCHHHHHHHHHTCC--------
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 99998098989999997699987819------89897999999819799999999818998898611
No 10
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=161.15 Aligned_cols=123 Identities=19% Similarity=0.214 Sum_probs=57.5
Q ss_pred CCCCCCCHHHHHHHCC--CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-----CCCCCCCCCC
Q ss_conf 5899982999999929--95447998848999874478998556688831999999999974999-----9997899999
Q 001754 641 IDDGGQGVVHLAAALG--YEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA-----PGAVEDPTPA 713 (1017)
Q Consensus 641 ~D~~G~TpLHlAA~~G--~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GA~-----~~~~dd~~~~ 713 (1017)
.|..|.||||+|+..| +.+++++|+..|++++.+|..|+||||+|+..|+.+++++|++.|++ ++..+
T Consensus 134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~----- 208 (364)
T 3ljn_A 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN----- 208 (364)
T ss_dssp EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCC-----
T ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC-----
T ss_conf 798898789999974996699999999769997362889998999999829899999998605541235552328-----
Q ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCC
Q ss_conf 999998999999639299999999806888876786555765034999975----99999999819
Q 001754 714 FPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA----EKANETAAQIG 775 (1017)
Q Consensus 714 d~~G~TPLhlAa~~Gh~~iv~~LLe~Ga~~~l~~l~l~d~~~G~Taa~ia~----~~~ve~L~e~~ 775 (1017)
..|.||||+|+..|+.+++++|++.| ++++..+.. |.||++++. .+.++.|++.+
T Consensus 209 -~~g~t~L~~A~~~g~~~~v~~Ll~~g-----ad~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~~ 267 (364)
T 3ljn_A 209 -KQGNSHLHWAILINWEDVAMRFVEMG-----IDVNMEDNE-HTVPLYLSVRAAMVLLTKELLQKT 267 (364)
T ss_dssp -TTCCCTTHHHHTTTCHHHHHHHHTTT-----CCTTCCCTT-SCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred -CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHHCHHHHHHHHHHCC
T ss_conf -89980999999759889999999869-----998887999-998899999838299999999748
Done!