Query 001755
Match_columns 1017
No_of_seqs 824 out of 3943
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0116 RasGAP SH3 binding pro 100.0 6.7E-54 1.5E-58 476.8 32.4 387 566-995 11-401 (419)
2 KOG1258 mRNA processing protei 100.0 2.5E-51 5.3E-56 460.5 40.2 461 10-487 101-573 (577)
3 KOG1915 Cell cycle control pro 100.0 1.3E-36 2.9E-41 327.4 29.7 402 23-459 152-626 (677)
4 KOG1914 mRNA cleavage and poly 100.0 4.3E-31 9.4E-36 290.1 36.7 372 20-461 95-504 (656)
5 KOG1915 Cell cycle control pro 100.0 1.3E-29 2.7E-34 273.8 36.5 355 34-463 89-541 (677)
6 KOG2104 Nuclear transport fact 99.9 6.7E-28 1.4E-32 212.5 9.8 114 569-687 7-123 (126)
7 KOG0495 HAT repeat protein [RN 99.9 9.7E-25 2.1E-29 243.9 33.1 242 199-462 545-786 (913)
8 cd00780 NTF2 Nuclear transport 99.9 4.7E-25 1E-29 210.6 12.3 115 568-687 2-119 (119)
9 KOG2047 mRNA splicing factor [ 99.9 3.6E-22 7.7E-27 223.5 35.8 380 35-460 85-617 (835)
10 KOG0495 HAT repeat protein [RN 99.9 2.4E-22 5.2E-27 224.9 33.2 351 34-462 532-884 (913)
11 COG5107 RNA14 Pre-mRNA 3'-end 99.9 2.8E-22 6.2E-27 215.9 29.6 365 24-462 122-535 (660)
12 KOG1070 rRNA processing protei 99.9 2.6E-21 5.7E-26 231.5 27.3 246 200-462 1454-1704(1710)
13 PF02136 NTF2: Nuclear transpo 99.9 1E-21 2.2E-26 187.7 9.9 113 571-685 1-118 (118)
14 KOG4626 O-linked N-acetylgluco 99.9 1.8E-19 3.8E-24 200.8 27.9 360 54-463 115-490 (966)
15 KOG1914 mRNA cleavage and poly 99.8 4.1E-18 8.9E-23 188.5 33.9 368 34-458 35-464 (656)
16 KOG2047 mRNA splicing factor [ 99.8 1.8E-18 3.8E-23 194.2 28.9 356 24-459 359-724 (835)
17 KOG4353 RNA export factor NXT1 99.8 9.5E-20 2.1E-24 163.5 5.7 112 572-688 16-137 (139)
18 KOG0128 RNA-binding protein SA 99.8 4.4E-16 9.5E-21 180.5 29.8 339 35-455 207-560 (881)
19 TIGR00990 3a0801s09 mitochondr 99.8 9.4E-15 2E-19 179.7 43.6 259 177-461 309-574 (615)
20 KOG4626 O-linked N-acetylgluco 99.7 1E-16 2.2E-21 179.0 20.7 263 170-461 124-386 (966)
21 TIGR00990 3a0801s09 mitochondr 99.7 1E-14 2.2E-19 179.4 36.4 216 197-417 358-573 (615)
22 PLN03134 glycine-rich RNA-bind 99.7 2.1E-16 4.5E-21 155.0 16.4 83 880-963 33-116 (144)
23 TIGR02917 PEP_TPR_lipo putativ 99.7 2.6E-14 5.5E-19 183.1 40.1 261 171-462 610-870 (899)
24 KOG1070 rRNA processing protei 99.7 1.1E-15 2.5E-20 183.9 23.8 217 224-461 1444-1666(1710)
25 TIGR02917 PEP_TPR_lipo putativ 99.7 4.8E-14 1E-18 180.6 40.9 237 202-460 565-801 (899)
26 PRK11447 cellulose synthase su 99.7 5.9E-14 1.3E-18 183.9 39.5 240 205-458 462-740 (1157)
27 PRK11447 cellulose synthase su 99.7 4.7E-13 1E-17 175.6 44.0 260 174-462 281-636 (1157)
28 KOG0105 Alternative splicing f 99.7 1.2E-16 2.6E-21 153.0 7.4 129 881-1013 6-145 (241)
29 PRK15174 Vi polysaccharide exp 99.7 4E-13 8.7E-18 165.3 40.4 263 171-462 119-385 (656)
30 KOG1258 mRNA processing protei 99.6 1.3E-13 2.8E-18 156.9 31.2 347 34-443 61-489 (577)
31 PRK15174 Vi polysaccharide exp 99.6 5.5E-13 1.2E-17 164.2 32.9 256 177-462 91-351 (656)
32 PRK11788 tetratricopeptide rep 99.6 1.7E-12 3.6E-17 150.8 35.1 231 171-419 116-355 (389)
33 KOG2396 HAT (Half-A-TPR) repea 99.6 3.6E-13 7.9E-18 149.0 27.2 96 356-462 468-563 (568)
34 TIGR01659 sex-lethal sex-letha 99.6 4.2E-14 9.2E-19 158.5 16.5 81 882-963 194-277 (346)
35 PRK11788 tetratricopeptide rep 99.6 2.8E-12 6E-17 149.0 31.8 258 176-463 49-316 (389)
36 PF13429 TPR_15: Tetratricopep 99.5 2E-14 4.3E-19 159.2 11.5 237 200-459 40-278 (280)
37 PRK12370 invasion protein regu 99.5 3.1E-12 6.7E-17 154.9 31.3 202 180-397 279-489 (553)
38 PF05843 Suf: Suppressor of fo 99.5 4.6E-14 9.9E-19 155.4 14.0 148 309-472 2-150 (280)
39 COG3063 PilF Tfp pilus assembl 99.5 2E-12 4.2E-17 131.0 23.9 186 206-399 37-223 (250)
40 TIGR02521 type_IV_pilW type IV 99.5 3.7E-12 8E-17 135.2 27.7 200 204-414 31-231 (234)
41 COG3063 PilF Tfp pilus assembl 99.5 1.4E-12 3.1E-17 132.0 22.7 206 239-463 36-241 (250)
42 PRK10049 pgaA outer membrane p 99.5 1.2E-11 2.7E-16 155.3 36.7 228 221-463 213-461 (765)
43 KOG0113 U1 small nuclear ribon 99.5 1.1E-13 2.3E-18 143.0 14.6 83 879-962 99-182 (335)
44 KOG0547 Translocase of outer m 99.5 2.3E-11 5E-16 134.2 31.6 212 199-415 355-566 (606)
45 PRK12370 invasion protein regu 99.5 5.1E-12 1.1E-16 153.1 29.3 207 200-418 252-473 (553)
46 PRK09782 bacteriophage N4 rece 99.5 8.6E-12 1.9E-16 157.3 31.6 243 196-463 467-711 (987)
47 KOG0107 Alternative splicing f 99.5 2.3E-13 5E-18 130.3 12.7 81 880-966 9-90 (195)
48 PRK09782 bacteriophage N4 rece 99.5 1.4E-11 3E-16 155.5 30.2 231 207-460 512-742 (987)
49 KOG1155 Anaphase-promoting com 99.5 1.3E-10 2.9E-15 127.6 32.4 194 170-377 270-494 (559)
50 PRK10049 pgaA outer membrane p 99.5 7.2E-11 1.6E-15 148.4 35.3 202 205-420 238-461 (765)
51 PF13429 TPR_15: Tetratricopep 99.4 7.3E-13 1.6E-17 146.7 14.3 236 206-462 10-247 (280)
52 TIGR02521 type_IV_pilW type IV 99.4 6.5E-11 1.4E-15 125.6 26.9 204 237-459 30-233 (234)
53 PRK11189 lipoprotein NlpI; Pro 99.4 8E-11 1.7E-15 131.2 28.5 204 198-418 57-268 (296)
54 TIGR01659 sex-lethal sex-letha 99.4 2.6E-12 5.6E-17 144.2 16.0 82 877-959 103-185 (346)
55 KOG0121 Nuclear cap-binding pr 99.4 5.2E-13 1.1E-17 121.0 8.1 80 880-960 35-115 (153)
56 TIGR01648 hnRNP-R-Q heterogene 99.4 2.8E-12 6.1E-17 151.0 15.6 74 881-963 233-309 (578)
57 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4.9E-12 1.1E-16 145.0 14.4 83 879-962 267-350 (352)
58 KOG1126 DNA-binding cell divis 99.4 1.1E-11 2.5E-16 142.0 16.2 208 198-417 415-622 (638)
59 KOG1126 DNA-binding cell divis 99.3 8.9E-11 1.9E-15 134.8 22.9 218 223-461 406-623 (638)
60 KOG0547 Translocase of outer m 99.3 1.2E-10 2.7E-15 128.5 22.2 232 209-460 331-568 (606)
61 KOG1155 Anaphase-promoting com 99.3 1E-10 2.3E-15 128.4 21.4 196 178-378 339-536 (559)
62 KOG4207 Predicted splicing fac 99.3 5.6E-12 1.2E-16 123.5 10.2 79 881-960 13-92 (256)
63 KOG0149 Predicted RNA-binding 99.3 3E-12 6.5E-17 128.8 7.8 80 878-958 9-88 (247)
64 KOG0122 Translation initiation 99.3 1.8E-11 3.9E-16 123.5 13.0 81 880-961 188-269 (270)
65 PF05843 Suf: Suppressor of fo 99.3 2.6E-11 5.6E-16 133.6 15.1 135 206-341 3-140 (280)
66 PRK11189 lipoprotein NlpI; Pro 99.3 2.8E-10 6.1E-15 126.8 23.3 225 219-462 41-269 (296)
67 PF00076 RRM_1: RNA recognitio 99.3 1.8E-11 3.9E-16 104.8 9.4 69 884-954 1-70 (70)
68 PLN03218 maturation of RBCL 1; 99.3 2.1E-08 4.6E-13 127.8 40.7 265 171-460 516-785 (1060)
69 KOG0125 Ataxin 2-binding prote 99.3 2.4E-11 5.1E-16 127.2 11.4 78 880-960 95-173 (376)
70 PLN03218 maturation of RBCL 1; 99.3 2.4E-08 5.3E-13 127.3 40.9 264 171-458 481-748 (1060)
71 KOG3060 Uncharacterized conser 99.3 3E-09 6.5E-14 109.3 25.8 193 218-419 26-224 (289)
72 KOG2076 RNA polymerase III tra 99.3 3.8E-09 8.2E-14 125.0 30.0 248 199-457 202-554 (895)
73 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 2.8E-11 6.1E-16 138.7 10.9 81 881-962 3-84 (352)
74 KOG0126 Predicted RNA-binding 99.2 1.4E-12 3.1E-17 125.2 -0.0 80 877-957 31-111 (219)
75 TIGR00540 hemY_coli hemY prote 99.2 5.5E-09 1.2E-13 122.1 30.0 235 206-460 120-401 (409)
76 COG5107 RNA14 Pre-mRNA 3'-end 99.2 1.1E-08 2.4E-13 112.0 29.5 377 34-460 58-497 (660)
77 PLN03081 pentatricopeptide (PP 99.2 5.2E-09 1.1E-13 131.0 31.6 258 170-462 267-527 (697)
78 PLN03120 nucleic acid binding 99.2 4.8E-11 1E-15 124.9 10.5 76 881-960 4-79 (260)
79 PRK10747 putative protoheme IX 99.2 6.9E-09 1.5E-13 120.7 28.8 221 215-459 129-391 (398)
80 PLN03213 repressor of silencin 99.2 4.9E-11 1.1E-15 130.1 9.5 76 880-960 9-87 (759)
81 PLN02789 farnesyltranstransfer 99.2 7.6E-09 1.6E-13 115.5 26.8 206 205-419 38-254 (320)
82 KOG0148 Apoptosis-promoting RN 99.2 2.2E-10 4.7E-15 117.1 12.9 78 879-963 162-240 (321)
83 KOG0130 RNA-binding protein RB 99.2 6.8E-11 1.5E-15 108.2 8.1 83 880-963 71-154 (170)
84 TIGR01645 half-pint poly-U bin 99.2 1E-10 2.3E-15 137.9 11.3 81 881-962 204-285 (612)
85 PF14259 RRM_6: RNA recognitio 99.2 1.4E-10 3E-15 99.5 9.0 69 884-954 1-70 (70)
86 KOG2076 RNA polymerase III tra 99.1 1.5E-08 3.2E-13 120.1 28.0 253 184-452 154-506 (895)
87 PLN03121 nucleic acid binding 99.1 1.6E-10 3.4E-15 119.0 10.2 76 880-959 4-79 (243)
88 KOG1173 Anaphase-promoting com 99.1 5.2E-08 1.1E-12 110.2 29.9 215 199-419 307-522 (611)
89 TIGR03302 OM_YfiO outer membra 99.1 7.1E-09 1.5E-13 111.6 22.5 177 198-380 27-234 (235)
90 TIGR01645 half-pint poly-U bin 99.1 1.4E-10 3.1E-15 136.8 9.9 79 880-959 106-185 (612)
91 KOG1125 TPR repeat-containing 99.1 4.1E-09 8.9E-14 119.6 20.7 196 211-418 292-496 (579)
92 KOG1174 Anaphase-promoting com 99.1 2.1E-08 4.5E-13 109.0 24.9 244 199-463 261-505 (564)
93 KOG0146 RNA-binding protein ET 99.1 1.7E-10 3.8E-15 117.0 8.4 86 877-963 281-367 (371)
94 PRK10370 formate-dependent nit 99.1 5.5E-09 1.2E-13 109.0 19.3 124 217-342 52-178 (198)
95 KOG2002 TPR-containing nuclear 99.1 2.2E-07 4.9E-12 110.9 34.6 239 170-421 315-565 (1018)
96 KOG1840 Kinesin light chain [C 99.1 1.1E-08 2.3E-13 119.2 23.4 248 199-457 194-478 (508)
97 KOG1125 TPR repeat-containing 99.1 4E-09 8.6E-14 119.7 19.1 190 175-381 298-530 (579)
98 PLN02789 farnesyltranstransfer 99.1 2.5E-08 5.4E-13 111.4 25.5 210 170-395 45-267 (320)
99 PRK14574 hmsH outer membrane p 99.1 3.5E-08 7.6E-13 122.6 29.1 190 196-395 26-215 (822)
100 PRK14574 hmsH outer membrane p 99.1 4.7E-07 1E-11 112.7 38.9 408 9-469 21-524 (822)
101 TIGR00540 hemY_coli hemY prote 99.1 4.3E-08 9.4E-13 114.6 27.9 234 214-462 94-370 (409)
102 KOG2002 TPR-containing nuclear 99.1 2.3E-08 4.9E-13 119.2 25.2 269 174-463 464-750 (1018)
103 PLN03077 Protein ECB2; Provisi 99.1 5.4E-08 1.2E-12 124.8 30.9 258 170-463 432-691 (857)
104 PRK15179 Vi polysaccharide bio 99.1 5.4E-09 1.2E-13 127.5 20.5 136 204-341 86-221 (694)
105 KOG1129 TPR repeat-containing 99.1 7.7E-09 1.7E-13 109.1 18.1 236 204-461 221-461 (478)
106 KOG0148 Apoptosis-promoting RN 99.1 3.2E-10 6.9E-15 115.9 7.6 81 882-963 63-144 (321)
107 PRK15359 type III secretion sy 99.0 5.4E-09 1.2E-13 103.4 15.5 113 224-341 13-125 (144)
108 KOG0145 RNA-binding protein EL 99.0 1.5E-09 3.3E-14 109.9 10.5 82 880-962 40-122 (360)
109 PLN03081 pentatricopeptide (PP 99.0 2.7E-07 5.9E-12 115.6 33.1 252 170-457 166-419 (697)
110 KOG2003 TPR repeat-containing 99.0 1E-07 2.2E-12 104.2 24.9 121 218-340 504-624 (840)
111 KOG2396 HAT (Half-A-TPR) repea 99.0 3.5E-08 7.5E-13 110.2 21.7 101 184-285 85-186 (568)
112 PRK15179 Vi polysaccharide bio 99.0 3E-08 6.5E-13 121.1 23.2 148 232-388 80-227 (694)
113 TIGR01628 PABP-1234 polyadenyl 99.0 4.4E-09 9.5E-14 128.1 15.8 80 880-961 284-364 (562)
114 KOG4212 RNA-binding protein hn 99.0 3.5E-09 7.7E-14 114.4 12.7 79 880-960 43-123 (608)
115 PRK10747 putative protoheme IX 99.0 2.1E-07 4.5E-12 108.4 28.6 230 215-463 95-362 (398)
116 KOG1129 TPR repeat-containing 99.0 9.9E-09 2.1E-13 108.3 15.5 208 203-419 255-462 (478)
117 TIGR01628 PABP-1234 polyadenyl 99.0 1.6E-09 3.5E-14 131.9 11.3 76 883-959 2-78 (562)
118 KOG0145 RNA-binding protein EL 99.0 2.5E-09 5.5E-14 108.3 10.5 81 880-961 277-358 (360)
119 PLN03077 Protein ECB2; Provisi 99.0 4.2E-07 9.1E-12 116.7 33.6 256 170-459 331-619 (857)
120 KOG0111 Cyclophilin-type pepti 99.0 4.1E-10 8.9E-15 111.3 4.6 82 880-962 9-91 (298)
121 PRK14720 transcript cleavage f 99.0 6E-08 1.3E-12 119.1 24.2 198 197-420 24-257 (906)
122 TIGR01622 SF-CC1 splicing fact 99.0 1.9E-09 4E-14 128.2 11.0 81 878-959 86-166 (457)
123 PRK15359 type III secretion sy 99.0 2.3E-08 4.9E-13 98.9 16.8 125 257-393 12-136 (144)
124 KOG1174 Anaphase-promoting com 99.0 8.1E-08 1.7E-12 104.5 22.0 242 198-461 226-470 (564)
125 smart00362 RRM_2 RNA recogniti 98.9 3.3E-09 7.2E-14 90.4 8.9 71 883-956 1-72 (72)
126 KOG1173 Anaphase-promoting com 98.9 8.2E-08 1.8E-12 108.7 21.9 249 206-476 280-536 (611)
127 KOG0124 Polypyrimidine tract-b 98.9 6.4E-10 1.4E-14 117.3 4.5 75 882-957 114-189 (544)
128 KOG2003 TPR repeat-containing 98.9 6.2E-08 1.3E-12 105.8 19.7 239 211-473 463-704 (840)
129 TIGR01642 U2AF_lg U2 snRNP aux 98.9 4E-09 8.6E-14 127.2 11.4 79 881-960 295-374 (509)
130 TIGR01648 hnRNP-R-Q heterogene 98.9 3.1E-09 6.6E-14 125.6 10.0 75 880-956 57-133 (578)
131 KOG0127 Nucleolar protein fibr 98.9 4.1E-09 8.8E-14 117.2 10.2 84 877-961 288-378 (678)
132 PRK10370 formate-dependent nit 98.9 9.9E-08 2.2E-12 99.6 19.7 125 251-384 52-179 (198)
133 TIGR01622 SF-CC1 splicing fact 98.9 5.1E-09 1.1E-13 124.5 10.8 79 881-960 186-265 (457)
134 smart00360 RRM RNA recognition 98.9 6.5E-09 1.4E-13 88.1 8.3 70 886-956 1-71 (71)
135 cd05804 StaR_like StaR_like; a 98.9 1.2E-06 2.5E-11 100.5 29.3 246 203-460 42-295 (355)
136 cd05804 StaR_like StaR_like; a 98.9 3.2E-07 6.9E-12 105.2 24.4 206 200-417 2-217 (355)
137 KOG0108 mRNA cleavage and poly 98.9 4E-09 8.6E-14 119.9 8.4 80 882-962 19-99 (435)
138 KOG3060 Uncharacterized conser 98.9 3.4E-07 7.4E-12 94.4 21.3 173 206-386 51-228 (289)
139 TIGR03302 OM_YfiO outer membra 98.9 2.2E-07 4.8E-12 100.0 21.4 174 235-417 30-234 (235)
140 KOG0114 Predicted RNA-binding 98.9 9.4E-09 2E-13 90.2 8.3 76 880-959 17-93 (124)
141 KOG0117 Heterogeneous nuclear 98.8 1.4E-08 3E-13 110.9 10.7 72 881-961 259-331 (506)
142 KOG0117 Heterogeneous nuclear 98.8 1.2E-08 2.7E-13 111.2 10.3 77 880-957 82-160 (506)
143 KOG1840 Kinesin light chain [C 98.8 4.6E-07 9.9E-12 105.8 23.3 237 169-413 206-477 (508)
144 COG5010 TadD Flp pilus assembl 98.8 3.2E-07 6.9E-12 95.7 19.6 176 223-411 52-227 (257)
145 COG0724 RNA-binding proteins ( 98.8 1.3E-08 2.8E-13 111.8 10.0 78 881-959 115-193 (306)
146 KOG4162 Predicted calmodulin-b 98.8 4.6E-05 1E-09 89.7 38.6 225 220-462 460-787 (799)
147 COG2956 Predicted N-acetylgluc 98.8 2.8E-06 6.1E-11 90.5 26.1 245 169-439 76-325 (389)
148 KOG4162 Predicted calmodulin-b 98.8 5.1E-06 1.1E-10 97.6 30.6 220 182-420 464-788 (799)
149 COG2956 Predicted N-acetylgluc 98.8 1.2E-06 2.7E-11 93.1 23.0 234 211-462 43-282 (389)
150 COG5010 TadD Flp pilus assembl 98.8 2.8E-07 6.1E-12 96.1 18.0 168 199-376 62-229 (257)
151 KOG0131 Splicing factor 3b, su 98.8 7.8E-09 1.7E-13 100.2 6.0 79 880-959 8-87 (203)
152 TIGR02552 LcrH_SycD type III s 98.8 2.1E-07 4.5E-12 90.8 15.9 115 225-341 4-118 (135)
153 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 2E-08 4.4E-13 119.4 10.2 72 881-959 2-76 (481)
154 cd00590 RRM RRM (RNA recogniti 98.7 6.2E-08 1.3E-12 82.9 9.7 72 883-956 1-73 (74)
155 TIGR02552 LcrH_SycD type III s 98.7 2.7E-07 5.8E-12 90.0 15.3 119 259-386 4-122 (135)
156 KOG0127 Nucleolar protein fibr 98.7 3.3E-08 7.1E-13 110.2 9.0 80 881-962 117-197 (678)
157 KOG0144 RNA-binding protein CU 98.7 4.7E-08 1E-12 106.2 9.9 82 877-959 30-115 (510)
158 smart00361 RRM_1 RNA recogniti 98.7 4.7E-08 1E-12 83.7 8.0 62 895-956 2-70 (70)
159 KOG0144 RNA-binding protein CU 98.7 1.1E-08 2.4E-13 111.1 5.0 83 880-964 123-209 (510)
160 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.7 6.3E-08 1.4E-12 115.2 11.0 77 879-961 273-351 (481)
161 KOG0131 Splicing factor 3b, su 98.7 3.2E-08 7E-13 96.0 6.6 81 881-961 96-177 (203)
162 KOG0624 dsRNA-activated protei 98.7 2E-05 4.2E-10 84.4 27.8 196 185-390 54-264 (504)
163 KOG0128 RNA-binding protein SA 98.7 1E-05 2.2E-10 95.8 27.9 374 24-459 125-527 (881)
164 KOG4209 Splicing factor RNPS1, 98.7 8.9E-08 1.9E-12 100.9 9.7 88 879-967 99-186 (231)
165 KOG0415 Predicted peptidyl pro 98.6 4E-08 8.7E-13 103.9 6.9 79 880-959 238-317 (479)
166 COG4783 Putative Zn-dependent 98.6 2.1E-06 4.6E-11 96.5 20.6 137 235-380 303-439 (484)
167 KOG1128 Uncharacterized conser 98.6 2.4E-06 5.3E-11 99.6 21.2 246 177-459 370-617 (777)
168 PRK15363 pathogenicity island 98.6 1.2E-06 2.5E-11 85.9 15.6 102 199-301 29-131 (157)
169 KOG1128 Uncharacterized conser 98.6 4.3E-07 9.3E-12 105.7 14.6 191 204-413 424-614 (777)
170 KOG0147 Transcriptional coacti 98.6 3.5E-08 7.6E-13 110.9 5.6 78 881-959 278-356 (549)
171 KOG0153 Predicted RNA-binding 98.6 1.3E-07 2.8E-12 100.6 8.8 76 878-960 225-302 (377)
172 KOG1156 N-terminal acetyltrans 98.6 7.1E-06 1.5E-10 94.6 23.3 123 214-338 51-173 (700)
173 KOG0109 RNA-binding protein LA 98.6 6.3E-08 1.4E-12 100.3 5.5 71 882-961 3-74 (346)
174 TIGR01642 U2AF_lg U2 snRNP aux 98.6 3.3E-07 7.1E-12 110.6 12.7 79 879-958 173-257 (509)
175 KOG1156 N-terminal acetyltrans 98.6 8.8E-06 1.9E-10 93.9 23.1 171 199-379 3-173 (700)
176 PRK15363 pathogenicity island 98.6 2.3E-06 4.9E-11 83.8 15.6 105 235-341 32-136 (157)
177 PF13893 RRM_5: RNA recognitio 98.6 3.2E-07 6.8E-12 74.8 8.3 55 898-958 1-56 (56)
178 COG4783 Putative Zn-dependent 98.5 1.9E-05 4.2E-10 89.0 24.4 163 201-389 303-465 (484)
179 KOG4205 RNA-binding protein mu 98.5 8.4E-08 1.8E-12 104.7 4.7 82 880-962 5-86 (311)
180 KOG0624 dsRNA-activated protei 98.5 3.5E-05 7.6E-10 82.6 23.9 209 199-419 33-256 (504)
181 PLN03088 SGT1, suppressor of 98.5 2.1E-06 4.6E-11 98.1 16.2 96 244-341 8-103 (356)
182 KOG0124 Polypyrimidine tract-b 98.5 2.4E-07 5.2E-12 98.2 7.0 78 881-959 210-288 (544)
183 KOG4661 Hsp27-ERE-TATA-binding 98.5 8.4E-07 1.8E-11 99.0 11.6 83 880-963 404-487 (940)
184 PF08424 NRDE-2: NRDE-2, neces 98.5 7.7E-06 1.7E-10 92.0 19.6 153 225-380 6-185 (321)
185 PRK14720 transcript cleavage f 98.4 9.5E-06 2E-10 100.2 20.7 208 232-462 25-256 (906)
186 KOG4205 RNA-binding protein mu 98.4 6.6E-07 1.4E-11 97.8 9.6 81 881-962 97-177 (311)
187 KOG4208 Nucleolar RNA-binding 98.4 8.8E-07 1.9E-11 88.3 7.6 79 881-960 49-129 (214)
188 KOG0123 Polyadenylate-binding 98.4 8.4E-07 1.8E-11 100.5 8.5 74 882-959 77-151 (369)
189 KOG4206 Spliceosomal protein s 98.4 1.1E-06 2.4E-11 89.2 8.0 79 880-962 8-91 (221)
190 PLN03088 SGT1, suppressor of 98.3 8E-06 1.7E-10 93.4 16.1 105 207-313 5-109 (356)
191 COG5191 Uncharacterized conser 98.3 9.6E-07 2.1E-11 93.0 7.5 134 177-320 32-188 (435)
192 KOG0533 RRM motif-containing p 98.3 5E-06 1.1E-10 87.4 12.4 80 878-959 80-160 (243)
193 KOG0553 TPR repeat-containing 98.3 5.1E-06 1.1E-10 88.4 12.5 106 284-397 92-197 (304)
194 cd00189 TPR Tetratricopeptide 98.3 6.7E-06 1.4E-10 72.7 11.5 94 206-300 2-95 (100)
195 PF12569 NARP1: NMDA receptor- 98.3 0.00055 1.2E-08 81.3 30.6 263 183-459 18-335 (517)
196 PF08424 NRDE-2: NRDE-2, neces 98.3 3.5E-05 7.5E-10 86.8 19.3 147 184-339 7-185 (321)
197 cd00189 TPR Tetratricopeptide 98.3 7.8E-06 1.7E-10 72.3 11.2 98 240-339 2-99 (100)
198 TIGR02795 tol_pal_ybgF tol-pal 98.3 2E-05 4.3E-10 74.4 14.4 100 239-340 3-108 (119)
199 KOG0548 Molecular co-chaperone 98.3 0.001 2.2E-08 76.0 29.9 197 184-392 239-469 (539)
200 PF09976 TPR_21: Tetratricopep 98.2 4E-05 8.6E-10 75.9 16.5 117 216-335 23-145 (145)
201 KOG0110 RNA-binding protein (R 98.2 8.1E-07 1.8E-11 102.8 4.4 80 880-960 612-692 (725)
202 KOG0132 RNA polymerase II C-te 98.2 2.3E-06 4.9E-11 99.7 7.9 75 881-962 421-496 (894)
203 KOG0553 TPR repeat-containing 98.2 1.9E-05 4E-10 84.2 14.0 103 211-315 88-190 (304)
204 KOG0550 Molecular chaperone (D 98.2 2.4E-05 5.2E-10 86.0 15.2 231 172-415 59-316 (486)
205 KOG0106 Alternative splicing f 98.2 1.4E-06 3.1E-11 89.4 5.3 73 882-963 2-75 (216)
206 PRK10153 DNA-binding transcrip 98.2 5.6E-05 1.2E-09 90.1 19.6 141 200-342 333-487 (517)
207 PF12569 NARP1: NMDA receptor- 98.2 0.00078 1.7E-08 80.0 28.9 196 168-379 44-292 (517)
208 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.2E-05 7E-10 73.0 14.4 104 205-310 3-112 (119)
209 KOG1457 RNA binding protein (c 98.2 1.7E-05 3.6E-10 79.6 12.3 85 880-964 33-121 (284)
210 KOG0146 RNA-binding protein ET 98.2 1.4E-06 3E-11 89.1 4.7 81 880-962 18-102 (371)
211 PF08311 Mad3_BUB1_I: Mad3/BUB 98.2 9E-06 2E-10 78.0 9.7 109 180-299 3-125 (126)
212 PF14938 SNAP: Soluble NSF att 98.2 0.00015 3.2E-09 80.4 20.6 175 205-381 36-228 (282)
213 COG4235 Cytochrome c biogenesi 98.2 7.3E-05 1.6E-09 80.3 17.1 122 219-342 137-261 (287)
214 KOG0110 RNA-binding protein (R 98.2 4.4E-06 9.5E-11 96.9 8.4 78 882-959 516-596 (725)
215 COG3071 HemY Uncharacterized e 98.1 0.002 4.2E-08 71.4 28.1 229 217-462 97-361 (400)
216 KOG1127 TPR repeat-containing 98.1 2.9E-05 6.2E-10 93.2 14.8 177 199-383 487-664 (1238)
217 PF09976 TPR_21: Tetratricopep 98.1 9.1E-05 2E-09 73.3 16.0 117 250-376 23-145 (145)
218 PF12895 Apc3: Anaphase-promot 98.1 1.1E-05 2.3E-10 71.8 8.4 80 217-298 2-83 (84)
219 KOG1548 Transcription elongati 98.1 6.7E-06 1.5E-10 87.7 8.1 80 880-959 133-219 (382)
220 KOG0226 RNA-binding proteins [ 98.1 3.8E-06 8.2E-11 86.0 5.9 81 875-956 184-265 (290)
221 PRK11906 transcriptional regul 98.1 8.3E-05 1.8E-09 84.5 17.1 165 205-377 252-435 (458)
222 KOG0543 FKBP-type peptidyl-pro 98.1 4.6E-05 1E-09 84.5 14.7 146 209-381 213-358 (397)
223 KOG0109 RNA-binding protein LA 98.1 3.9E-06 8.5E-11 87.3 5.8 75 880-963 77-152 (346)
224 PRK02603 photosystem I assembl 98.1 0.00015 3.3E-09 74.0 17.4 119 236-383 33-154 (172)
225 KOG4212 RNA-binding protein hn 98.1 6.7E-06 1.5E-10 89.6 7.2 74 878-957 533-607 (608)
226 KOG2376 Signal recognition par 98.0 0.0019 4.2E-08 74.4 26.2 251 200-462 106-491 (652)
227 PF04733 Coatomer_E: Coatomer 98.0 7.5E-05 1.6E-09 82.6 14.8 203 201-419 63-269 (290)
228 KOG3785 Uncharacterized conser 98.0 0.0003 6.6E-09 75.8 18.4 170 199-387 54-223 (557)
229 PF13414 TPR_11: TPR repeat; P 98.0 2E-05 4.3E-10 67.0 8.0 64 204-267 3-67 (69)
230 PF14559 TPR_19: Tetratricopep 98.0 1.5E-05 3.2E-10 67.6 7.2 67 215-282 2-68 (68)
231 KOG0550 Molecular chaperone (D 98.0 0.00022 4.7E-09 78.7 17.7 172 239-418 170-353 (486)
232 COG4700 Uncharacterized protei 98.0 0.00055 1.2E-08 67.8 18.6 152 216-377 68-221 (251)
233 COG3071 HemY Uncharacterized e 98.0 0.0049 1.1E-07 68.3 27.9 238 200-461 149-393 (400)
234 KOG1127 TPR repeat-containing 98.0 0.0003 6.6E-09 84.8 19.6 186 218-415 472-659 (1238)
235 KOG0548 Molecular co-chaperone 98.0 0.00029 6.3E-09 80.3 18.6 133 217-357 311-469 (539)
236 PRK02603 photosystem I assembl 98.0 0.00016 3.5E-09 73.8 15.1 119 201-341 32-153 (172)
237 PF13414 TPR_11: TPR repeat; P 98.0 3.4E-05 7.4E-10 65.6 8.3 65 273-338 3-68 (69)
238 KOG3617 WD40 and TPR repeat-co 98.0 0.0021 4.5E-08 76.0 24.9 233 205-454 859-1170(1416)
239 CHL00033 ycf3 photosystem I as 97.9 0.00013 2.8E-09 74.2 13.6 84 238-323 35-121 (168)
240 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00018 3.9E-09 82.2 16.0 121 209-334 174-294 (395)
241 CHL00033 ycf3 photosystem I as 97.9 0.00021 4.6E-09 72.6 15.0 85 202-287 33-120 (168)
242 KOG2376 Signal recognition par 97.9 0.0024 5.2E-08 73.7 23.9 234 206-462 15-257 (652)
243 PF13432 TPR_16: Tetratricopep 97.9 3.6E-05 7.8E-10 64.6 7.3 57 211-267 4-60 (65)
244 PRK10153 DNA-binding transcrip 97.9 0.00038 8.3E-09 83.1 18.6 147 229-384 328-488 (517)
245 KOG1995 Conserved Zn-finger pr 97.9 4.2E-05 9.1E-10 82.8 9.4 86 878-963 63-156 (351)
246 smart00777 Mad3_BUB1_I Mad3/BU 97.9 5.7E-05 1.2E-09 71.6 9.3 107 181-298 4-124 (125)
247 PF13432 TPR_16: Tetratricopep 97.9 5.2E-05 1.1E-09 63.6 8.0 62 278-340 2-63 (65)
248 PF12895 Apc3: Anaphase-promot 97.9 4.9E-05 1.1E-09 67.5 8.2 81 251-334 2-84 (84)
249 KOG4454 RNA binding protein (R 97.9 1.3E-05 2.9E-10 80.2 4.6 77 881-960 9-86 (267)
250 COG4235 Cytochrome c biogenesi 97.9 0.00035 7.5E-09 75.2 15.5 121 253-382 137-260 (287)
251 PF14938 SNAP: Soluble NSF att 97.9 0.0002 4.4E-09 79.3 14.5 206 170-379 43-267 (282)
252 PRK15331 chaperone protein Sic 97.8 0.00034 7.3E-09 69.1 13.3 110 197-309 30-139 (165)
253 PRK04841 transcriptional regul 97.8 0.0047 1E-07 80.2 28.3 251 206-463 493-765 (903)
254 PRK10803 tol-pal system protei 97.8 0.00031 6.8E-09 76.4 14.6 102 238-341 142-250 (263)
255 KOG0123 Polyadenylate-binding 97.8 4.5E-05 9.7E-10 86.6 8.2 73 882-961 2-75 (369)
256 COG0457 NrfG FOG: TPR repeat [ 97.8 0.0095 2.1E-07 61.3 25.4 203 205-418 60-268 (291)
257 PF12688 TPR_5: Tetratrico pep 97.8 0.00054 1.2E-08 65.0 13.7 95 206-301 3-103 (120)
258 KOG3617 WD40 and TPR repeat-co 97.8 0.0013 2.9E-08 77.6 19.3 143 213-376 809-994 (1416)
259 PF14559 TPR_19: Tetratricopep 97.7 0.0001 2.2E-09 62.4 7.5 64 320-390 3-66 (68)
260 PRK10803 tol-pal system protei 97.7 0.00083 1.8E-08 73.1 16.4 105 204-310 142-253 (263)
261 PF04733 Coatomer_E: Coatomer 97.7 0.0002 4.4E-09 79.2 11.5 241 203-469 34-276 (290)
262 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0011 2.3E-08 76.0 17.4 126 240-377 171-296 (395)
263 KOG4210 Nuclear localization s 97.7 3.3E-05 7.2E-10 84.4 4.6 81 881-962 184-265 (285)
264 COG5191 Uncharacterized conser 97.7 6.3E-05 1.4E-09 79.6 6.4 87 198-285 101-188 (435)
265 COG4700 Uncharacterized protei 97.7 0.0052 1.1E-07 61.1 18.7 138 275-418 91-229 (251)
266 KOG4211 Splicing factor hnRNP- 97.7 0.0003 6.6E-09 78.9 11.4 76 882-958 104-179 (510)
267 PF08311 Mad3_BUB1_I: Mad3/BUB 97.7 0.00067 1.5E-08 65.2 12.4 109 221-335 2-126 (126)
268 KOG4849 mRNA cleavage factor I 97.6 0.00011 2.4E-09 78.1 7.4 75 880-955 79-156 (498)
269 PF13525 YfiO: Outer membrane 97.6 0.0019 4.1E-08 67.9 16.7 160 310-473 7-185 (203)
270 COG0457 NrfG FOG: TPR repeat [ 97.6 0.014 3E-07 60.0 23.2 173 200-381 91-268 (291)
271 PF12688 TPR_5: Tetratrico pep 97.6 0.0012 2.6E-08 62.7 13.1 100 274-377 2-103 (120)
272 PRK10866 outer membrane biogen 97.6 0.028 6E-07 60.7 25.0 164 203-392 31-218 (243)
273 PF13371 TPR_9: Tetratricopept 97.6 0.00038 8.3E-09 59.7 8.5 67 213-280 4-70 (73)
274 KOG0543 FKBP-type peptidyl-pro 97.6 0.0012 2.7E-08 73.4 14.4 101 239-341 258-359 (397)
275 PF13525 YfiO: Outer membrane 97.5 0.007 1.5E-07 63.6 19.3 162 205-392 6-184 (203)
276 KOG0151 Predicted splicing reg 97.5 0.00025 5.5E-09 82.2 8.6 82 878-959 171-255 (877)
277 KOG4211 Splicing factor hnRNP- 97.4 0.00032 6.9E-09 78.7 7.9 75 880-958 9-83 (510)
278 KOG1855 Predicted RNA-binding 97.4 0.00037 8E-09 76.7 8.2 67 878-944 228-306 (484)
279 PF13371 TPR_9: Tetratricopept 97.4 0.00067 1.4E-08 58.2 8.1 60 281-341 3-62 (73)
280 PRK15331 chaperone protein Sic 97.4 0.0024 5.1E-08 63.2 12.7 98 238-337 37-134 (165)
281 PRK11906 transcriptional regul 97.4 0.0073 1.6E-07 69.1 18.1 169 230-411 240-432 (458)
282 KOG4660 Protein Mei2, essentia 97.4 0.00021 4.5E-09 81.4 5.6 69 880-954 74-143 (549)
283 PF13428 TPR_14: Tetratricopep 97.3 0.00045 9.8E-09 53.0 5.6 42 205-246 2-43 (44)
284 KOG3785 Uncharacterized conser 97.3 0.014 3E-07 63.4 18.3 181 218-420 36-219 (557)
285 PRK04841 transcriptional regul 97.3 0.1 2.2E-06 67.9 29.8 238 216-461 386-644 (903)
286 PF04184 ST7: ST7 protein; In 97.3 0.014 3E-07 66.8 18.3 165 215-388 179-385 (539)
287 COG3898 Uncharacterized membra 97.3 0.23 5.1E-06 55.1 26.8 124 216-340 166-295 (531)
288 KOG3081 Vesicle coat complex C 97.2 0.028 6.1E-07 59.4 18.7 182 202-399 70-257 (299)
289 PF13428 TPR_14: Tetratricopep 97.2 0.00075 1.6E-08 51.8 5.1 41 239-280 2-42 (44)
290 KOG4555 TPR repeat-containing 97.2 0.0054 1.2E-07 57.5 11.4 93 214-338 53-145 (175)
291 COG1729 Uncharacterized protei 97.2 0.0048 1E-07 65.8 12.7 101 241-342 144-249 (262)
292 PRK10866 outer membrane biogen 97.2 0.017 3.7E-07 62.3 17.4 169 272-474 31-220 (243)
293 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0017 3.7E-08 74.0 9.8 71 197-267 68-141 (453)
294 KOG0147 Transcriptional coacti 97.1 0.00021 4.5E-09 81.2 2.4 81 876-957 174-254 (549)
295 COG4785 NlpI Lipoprotein NlpI, 97.1 0.037 8E-07 56.6 18.0 203 219-457 61-265 (297)
296 KOG4555 TPR repeat-containing 97.1 0.01 2.2E-07 55.7 12.9 82 185-267 59-144 (175)
297 KOG3081 Vesicle coat complex C 97.1 0.19 4E-06 53.4 23.6 161 205-381 108-274 (299)
298 PF10429 Mtr2: Nuclear pore RN 97.1 0.0012 2.7E-08 64.0 6.5 99 569-672 4-109 (166)
299 KOG4234 TPR repeat-containing 97.0 0.0068 1.5E-07 61.0 11.5 104 211-316 102-210 (271)
300 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0098 2.1E-07 68.0 14.4 68 233-301 70-140 (453)
301 PF13512 TPR_18: Tetratricopep 97.0 0.012 2.6E-07 57.0 12.3 108 309-420 11-133 (142)
302 PF04059 RRM_2: RNA recognitio 97.0 0.0055 1.2E-07 55.4 9.4 77 882-959 2-85 (97)
303 KOG0106 Alternative splicing f 96.9 0.0013 2.8E-08 67.9 5.9 67 880-955 98-165 (216)
304 KOG1585 Protein required for f 96.9 0.036 7.8E-07 57.7 15.9 195 171-376 40-254 (308)
305 KOG4234 TPR repeat-containing 96.9 0.016 3.5E-07 58.4 12.9 95 245-341 102-201 (271)
306 KOG2053 Mitochondrial inherita 96.9 0.31 6.8E-06 59.4 25.9 171 205-382 78-259 (932)
307 KOG0120 Splicing factor U2AF, 96.9 0.00077 1.7E-08 77.8 4.2 80 880-960 288-368 (500)
308 PF08777 RRM_3: RNA binding mo 96.9 0.0025 5.3E-08 59.0 6.7 69 881-956 1-75 (105)
309 PF13424 TPR_12: Tetratricopep 96.9 0.0027 5.8E-08 55.3 6.6 74 305-379 2-76 (78)
310 cd00531 NTF2_like Nuclear tran 96.9 0.01 2.2E-07 55.7 11.0 113 573-685 2-123 (124)
311 KOG1941 Acetylcholine receptor 96.8 0.12 2.7E-06 56.5 19.6 230 215-460 94-342 (518)
312 KOG4340 Uncharacterized conser 96.8 0.32 7E-06 52.1 22.1 96 202-298 142-266 (459)
313 PF13281 DUF4071: Domain of un 96.8 0.18 3.9E-06 57.1 21.7 174 205-381 142-337 (374)
314 KOG4340 Uncharacterized conser 96.8 0.12 2.7E-06 55.2 18.8 191 216-419 22-215 (459)
315 COG3898 Uncharacterized membra 96.8 0.29 6.4E-06 54.3 22.2 202 215-437 95-304 (531)
316 KOG2796 Uncharacterized conser 96.8 0.11 2.5E-06 54.6 18.2 141 200-341 165-319 (366)
317 COG1729 Uncharacterized protei 96.8 0.033 7.2E-07 59.5 14.7 104 280-388 148-254 (262)
318 COG4785 NlpI Lipoprotein NlpI, 96.8 0.11 2.4E-06 53.2 17.6 182 214-415 75-266 (297)
319 KOG2202 U2 snRNP splicing fact 96.7 0.0028 6.1E-08 65.9 6.4 61 896-958 83-145 (260)
320 PF04184 ST7: ST7 protein; In 96.7 0.093 2E-06 60.3 18.7 162 252-421 182-381 (539)
321 smart00386 HAT HAT (Half-A-TPR 96.7 0.0027 6E-08 44.7 4.3 32 218-249 1-32 (33)
322 COG3118 Thioredoxin domain-con 96.6 0.051 1.1E-06 58.6 15.2 123 215-341 145-269 (304)
323 COG4105 ComL DNA uptake lipopr 96.6 0.14 3E-06 54.5 17.9 165 308-476 34-214 (254)
324 KOG1585 Protein required for f 96.5 0.52 1.1E-05 49.4 20.8 124 320-453 122-251 (308)
325 PF13424 TPR_12: Tetratricopep 96.5 0.0077 1.7E-07 52.3 6.9 63 205-267 6-75 (78)
326 PF13431 TPR_17: Tetratricopep 96.5 0.0029 6.3E-08 45.6 3.3 33 226-258 1-33 (34)
327 KOG1586 Protein required for f 96.5 0.23 4.9E-06 51.6 17.8 148 218-383 28-188 (288)
328 COG4105 ComL DNA uptake lipopr 96.5 0.36 7.7E-06 51.4 19.9 172 204-409 34-230 (254)
329 KOG4648 Uncharacterized conser 96.5 0.01 2.3E-07 64.0 8.6 95 245-341 104-198 (536)
330 smart00386 HAT HAT (Half-A-TPR 96.4 0.0052 1.1E-07 43.3 4.4 32 363-394 1-32 (33)
331 KOG1457 RNA binding protein (c 96.4 0.0045 9.8E-08 62.6 5.3 64 880-948 209-273 (284)
332 PF13512 TPR_18: Tetratricopep 96.4 0.094 2E-06 50.9 14.1 21 363-383 113-133 (142)
333 PF06552 TOM20_plant: Plant sp 96.4 0.028 6E-07 56.3 10.6 27 363-389 94-120 (186)
334 PRK11634 ATP-dependent RNA hel 96.4 0.022 4.8E-07 70.0 12.2 69 883-959 488-561 (629)
335 COG3118 Thioredoxin domain-con 96.4 0.27 5.9E-06 53.1 18.6 164 222-397 121-286 (304)
336 PF02259 FAT: FAT domain; Int 96.4 0.18 3.9E-06 57.5 19.1 119 236-360 144-304 (352)
337 PF11608 Limkain-b1: Limkain b 96.3 0.02 4.3E-07 49.4 8.0 68 882-960 3-76 (90)
338 KOG1586 Protein required for f 96.3 0.81 1.8E-05 47.7 20.8 174 168-345 40-232 (288)
339 KOG2053 Mitochondrial inherita 96.3 0.65 1.4E-05 56.8 23.3 123 216-341 21-143 (932)
340 KOG2796 Uncharacterized conser 96.3 0.26 5.7E-06 52.0 17.5 135 242-383 181-320 (366)
341 PF06552 TOM20_plant: Plant sp 96.3 0.034 7.4E-07 55.7 10.6 66 220-286 7-82 (186)
342 smart00777 Mad3_BUB1_I Mad3/BU 96.2 0.12 2.5E-06 49.4 13.5 106 222-333 3-124 (125)
343 PF02184 HAT: HAT (Half-A-TPR) 96.2 0.0057 1.2E-07 42.7 3.3 29 34-66 3-31 (32)
344 KOG3973 Uncharacterized conser 96.2 0.0093 2E-07 64.0 6.5 12 571-582 206-217 (465)
345 COG5175 MOT2 Transcriptional r 96.1 0.011 2.5E-07 63.0 6.6 77 880-959 113-201 (480)
346 PF02259 FAT: FAT domain; Int 96.1 0.84 1.8E-05 51.9 22.7 124 271-395 144-304 (352)
347 KOG4648 Uncharacterized conser 96.0 0.025 5.5E-07 61.2 8.5 105 211-317 104-208 (536)
348 PF02184 HAT: HAT (Half-A-TPR) 96.0 0.0096 2.1E-07 41.6 3.5 31 363-394 1-31 (32)
349 KOG1456 Heterogeneous nuclear 96.0 0.11 2.3E-06 56.8 13.0 77 880-962 119-200 (494)
350 KOG0129 Predicted RNA-binding 95.8 0.019 4.2E-07 65.3 7.2 64 880-944 369-433 (520)
351 KOG1190 Polypyrimidine tract-b 95.8 0.085 1.9E-06 58.3 11.7 74 881-960 297-372 (492)
352 PF13281 DUF4071: Domain of un 95.7 0.77 1.7E-05 52.1 19.5 172 236-418 139-337 (374)
353 PF03704 BTAD: Bacterial trans 95.7 0.12 2.6E-06 50.9 11.8 106 214-339 16-127 (146)
354 KOG3824 Huntingtin interacting 95.7 0.36 7.7E-06 51.9 15.5 56 285-341 128-183 (472)
355 KOG2610 Uncharacterized conser 95.7 0.15 3.3E-06 55.4 12.8 135 201-337 134-276 (491)
356 KOG3616 Selective LIM binding 95.7 4.3 9.3E-05 48.6 25.2 61 239-299 662-732 (1636)
357 PF03704 BTAD: Bacterial trans 95.6 0.069 1.5E-06 52.6 9.7 64 205-268 63-126 (146)
358 PF13431 TPR_17: Tetratricopep 95.4 0.017 3.8E-07 41.5 3.2 32 261-293 2-33 (34)
359 KOG0530 Protein farnesyltransf 95.4 1.8 3.8E-05 46.1 18.8 176 216-395 55-233 (318)
360 KOG0105 Alternative splicing f 95.3 0.19 4.1E-06 49.8 11.0 56 880-943 114-169 (241)
361 PF14605 Nup35_RRM_2: Nup53/35 95.3 0.038 8.2E-07 44.2 5.3 52 882-941 2-53 (53)
362 PF05172 Nup35_RRM: Nup53/35/4 95.2 0.06 1.3E-06 49.1 6.8 77 881-958 6-89 (100)
363 KOG0890 Protein kinase of the 95.1 2.6 5.6E-05 57.1 23.7 211 204-419 1629-1889(2382)
364 KOG4642 Chaperone-dependent E3 95.1 0.17 3.7E-06 52.7 10.6 81 219-300 25-105 (284)
365 PF15008 DUF4518: Domain of un 95.1 0.073 1.6E-06 56.8 8.2 119 568-687 127-260 (262)
366 KOG2471 TPR repeat-containing 95.0 0.14 3.1E-06 58.1 10.3 152 239-392 207-378 (696)
367 KOG0129 Predicted RNA-binding 94.9 0.062 1.3E-06 61.4 7.5 63 880-943 258-325 (520)
368 KOG4206 Spliceosomal protein s 94.8 0.089 1.9E-06 54.1 7.5 74 880-959 145-220 (221)
369 KOG3152 TBP-binding protein, a 94.7 0.018 3.9E-07 59.8 2.3 70 882-952 75-157 (278)
370 KOG4307 RNA binding protein RB 94.5 0.11 2.5E-06 60.8 8.4 78 879-957 864-943 (944)
371 KOG2066 Vacuolar assembly/sort 94.5 16 0.00035 44.7 26.6 72 27-98 358-435 (846)
372 KOG2610 Uncharacterized conser 94.4 0.87 1.9E-05 49.7 14.1 159 215-377 114-275 (491)
373 PF10300 DUF3808: Protein of u 94.4 1.7 3.8E-05 51.6 18.4 153 217-377 201-375 (468)
374 PF07719 TPR_2: Tetratricopept 94.1 0.12 2.5E-06 36.7 5.0 32 309-340 2-33 (34)
375 PF07719 TPR_2: Tetratricopept 94.1 0.12 2.7E-06 36.6 5.0 29 239-267 2-30 (34)
376 KOG0545 Aryl-hydrocarbon recep 94.0 0.94 2E-05 47.5 12.8 119 205-341 179-297 (329)
377 KOG1365 RNA-binding protein Fu 93.9 0.039 8.6E-07 60.2 3.0 74 882-955 162-237 (508)
378 KOG0890 Protein kinase of the 93.8 16 0.00034 50.2 26.1 204 202-418 1668-1960(2382)
379 PF08631 SPO22: Meiosis protei 93.8 13 0.00028 41.0 27.4 232 215-456 4-273 (278)
380 KOG4642 Chaperone-dependent E3 93.8 0.24 5.3E-06 51.6 8.1 87 252-340 24-110 (284)
381 KOG2314 Translation initiation 93.5 0.17 3.7E-06 58.1 7.2 74 880-955 57-138 (698)
382 PF08952 DUF1866: Domain of un 93.4 0.22 4.9E-06 48.2 6.8 57 897-962 52-108 (146)
383 PF10602 RPN7: 26S proteasome 93.4 1.8 4E-05 44.2 14.0 64 205-268 37-103 (177)
384 KOG0985 Vesicle coat protein c 93.4 29 0.00062 43.8 25.5 178 204-396 1104-1326(1666)
385 KOG1130 Predicted G-alpha GTPa 93.4 1.2 2.6E-05 49.9 13.0 161 217-379 108-305 (639)
386 KOG1548 Transcription elongati 93.4 0.38 8.3E-06 52.4 9.1 75 880-959 264-350 (382)
387 PF10345 Cohesin_load: Cohesin 93.2 9.5 0.0002 47.2 22.6 183 200-394 26-234 (608)
388 KOG3763 mRNA export factor TAP 93.2 0.39 8.4E-06 56.0 9.5 115 571-687 340-497 (585)
389 COG1747 Uncharacterized N-term 93.2 15 0.00033 42.7 21.6 134 206-341 101-238 (711)
390 COG2976 Uncharacterized protei 93.0 4.2 9E-05 41.6 15.3 97 276-382 92-192 (207)
391 PF05918 API5: Apoptosis inhib 92.9 0.029 6.4E-07 66.3 0.0 50 205-256 59-109 (556)
392 KOG3824 Huntingtin interacting 92.8 0.23 5E-06 53.3 6.5 66 215-281 127-192 (472)
393 PF00515 TPR_1: Tetratricopept 92.8 0.21 4.6E-06 35.5 4.5 32 309-340 2-33 (34)
394 KOG1941 Acetylcholine receptor 92.5 12 0.00025 41.8 18.7 103 274-379 84-192 (518)
395 PF05918 API5: Apoptosis inhib 92.4 0.037 8E-07 65.5 0.0 10 574-583 306-315 (556)
396 KOG1924 RhoA GTPase effector D 92.3 0.61 1.3E-05 55.8 9.6 12 574-585 419-430 (1102)
397 KOG1924 RhoA GTPase effector D 92.3 0.51 1.1E-05 56.4 8.9 9 206-214 144-152 (1102)
398 PF10300 DUF3808: Protein of u 92.3 1.8 3.9E-05 51.5 13.9 123 217-340 246-379 (468)
399 KOG2253 U1 snRNP complex, subu 92.2 0.17 3.6E-06 59.6 4.9 66 881-956 40-106 (668)
400 PF04910 Tcf25: Transcriptiona 91.9 4.4 9.4E-05 46.5 15.9 139 201-340 37-225 (360)
401 PF00515 TPR_1: Tetratricopept 91.8 0.33 7.2E-06 34.5 4.4 29 239-267 2-30 (34)
402 KOG2300 Uncharacterized conser 91.8 30 0.00066 40.1 23.4 199 253-460 24-243 (629)
403 KOG0120 Splicing factor U2AF, 91.7 0.38 8.3E-06 56.1 7.1 63 896-958 424-489 (500)
404 KOG1365 RNA-binding protein Fu 91.5 0.23 4.9E-06 54.5 4.6 75 882-958 281-359 (508)
405 KOG0376 Serine-threonine phosp 91.4 0.31 6.8E-06 55.9 5.8 89 251-341 17-105 (476)
406 KOG1456 Heterogeneous nuclear 91.4 2 4.2E-05 47.4 11.4 75 880-960 286-362 (494)
407 KOG1190 Polypyrimidine tract-b 91.4 0.45 9.8E-06 52.8 6.8 77 879-960 412-490 (492)
408 KOG0545 Aryl-hydrocarbon recep 91.3 4.3 9.3E-05 42.8 13.3 77 238-316 230-306 (329)
409 PF04910 Tcf25: Transcriptiona 91.0 8.5 0.00019 44.1 17.1 49 216-268 22-70 (360)
410 TIGR02246 conserved hypothetic 91.0 2.5 5.4E-05 40.1 11.0 109 573-681 7-121 (128)
411 PF13181 TPR_8: Tetratricopept 90.7 0.58 1.3E-05 33.1 4.8 31 309-339 2-32 (34)
412 KOG0116 RasGAP SH3 binding pro 90.7 12 0.00027 43.2 17.8 12 933-944 301-312 (419)
413 KOG0115 RNA-binding protein p5 90.7 0.33 7.2E-06 50.8 4.7 76 882-959 32-112 (275)
414 KOG1308 Hsp70-interacting prot 90.6 0.1 2.2E-06 57.1 1.0 89 251-341 127-215 (377)
415 PF13176 TPR_7: Tetratricopept 90.4 0.53 1.1E-05 34.2 4.3 30 310-339 1-30 (36)
416 COG2976 Uncharacterized protei 90.4 2.2 4.8E-05 43.6 10.1 94 242-340 93-191 (207)
417 KOG4507 Uncharacterized conser 90.0 1.3 2.9E-05 51.6 9.1 106 280-393 614-720 (886)
418 PF13181 TPR_8: Tetratricopept 90.0 0.66 1.4E-05 32.8 4.6 30 239-268 2-31 (34)
419 KOG1464 COP9 signalosome, subu 89.4 10 0.00022 40.6 14.3 176 205-381 66-263 (440)
420 KOG0376 Serine-threonine phosp 89.3 0.65 1.4E-05 53.4 6.0 101 216-318 16-116 (476)
421 PF04053 Coatomer_WDAD: Coatom 89.0 19 0.0004 42.6 18.0 131 207-375 298-428 (443)
422 COG4976 Predicted methyltransf 88.9 0.55 1.2E-05 48.8 4.6 59 213-271 4-62 (287)
423 KOG1996 mRNA splicing factor [ 88.9 1.1 2.3E-05 47.7 6.8 62 896-957 301-363 (378)
424 KOG0112 Large RNA-binding prot 88.9 0.43 9.4E-06 58.1 4.5 73 880-959 454-529 (975)
425 KOG2193 IGF-II mRNA-binding pr 88.8 0.39 8.5E-06 53.3 3.7 72 882-960 2-75 (584)
426 PF13174 TPR_6: Tetratricopept 88.8 0.79 1.7E-05 32.0 4.2 31 351-382 3-33 (33)
427 PF13474 SnoaL_3: SnoaL-like d 88.8 2.3 5E-05 39.7 8.8 108 574-682 3-115 (121)
428 KOG0551 Hsp90 co-chaperone CNS 88.6 13 0.00029 41.0 15.0 91 170-265 89-180 (390)
429 PF10602 RPN7: 26S proteasome 88.6 4 8.7E-05 41.7 10.8 105 275-380 38-144 (177)
430 COG2909 MalT ATP-dependent tra 88.5 35 0.00075 42.7 19.9 206 182-391 438-662 (894)
431 PF13174 TPR_6: Tetratricopept 88.3 0.81 1.8E-05 31.9 4.0 31 310-340 2-32 (33)
432 KOG0551 Hsp90 co-chaperone CNS 88.1 2.3 4.9E-05 46.8 8.8 93 245-338 88-183 (390)
433 KOG3262 H/ACA small nucleolar 88.1 2.8 6.1E-05 41.7 8.6 13 904-916 97-109 (215)
434 KOG4676 Splicing factor, argin 88.0 0.74 1.6E-05 50.9 5.1 74 882-955 8-83 (479)
435 PF08631 SPO22: Meiosis protei 88.0 47 0.001 36.6 19.8 104 311-417 38-152 (278)
436 PF09613 HrpB1_HrpK: Bacterial 87.8 17 0.00037 36.3 14.0 51 286-337 23-73 (160)
437 KOG1308 Hsp70-interacting prot 87.7 0.38 8.2E-06 52.9 2.7 86 215-301 125-210 (377)
438 KOG2422 Uncharacterized conser 87.7 24 0.00052 41.8 17.1 47 220-266 254-312 (665)
439 KOG3616 Selective LIM binding 87.7 31 0.00067 41.8 18.0 29 431-459 997-1025(1636)
440 KOG2300 Uncharacterized conser 87.7 63 0.0014 37.7 22.4 165 211-379 330-515 (629)
441 KOG4307 RNA binding protein RB 87.5 9.8 0.00021 45.5 13.9 77 880-958 310-386 (944)
442 COG1747 Uncharacterized N-term 87.2 68 0.0015 37.7 22.7 178 207-395 69-251 (711)
443 KOG2416 Acinus (induces apopto 87.2 1.7 3.8E-05 50.6 7.7 73 880-959 443-520 (718)
444 KOG2422 Uncharacterized conser 87.1 75 0.0016 37.9 21.6 174 184-381 253-451 (665)
445 PF13176 TPR_7: Tetratricopept 86.8 1.3 2.7E-05 32.2 4.3 25 241-265 2-26 (36)
446 KOG1920 IkappaB kinase complex 86.8 13 0.00028 47.5 15.3 75 220-298 889-964 (1265)
447 KOG0530 Protein farnesyltransf 86.8 50 0.0011 35.6 20.3 184 199-389 72-309 (318)
448 PF10309 DUF2414: Protein of u 86.6 3.3 7.2E-05 34.2 7.0 52 882-943 6-61 (62)
449 PF09986 DUF2225: Uncharacteri 85.9 11 0.00024 39.7 12.6 97 217-341 90-198 (214)
450 KOG1538 Uncharacterized conser 85.8 18 0.0004 43.1 14.9 110 211-334 710-830 (1081)
451 KOG0985 Vesicle coat protein c 84.9 14 0.00031 46.2 13.9 90 251-355 1088-1177(1666)
452 COG4976 Predicted methyltransf 84.7 1.1 2.4E-05 46.6 4.2 58 247-306 4-61 (287)
453 PRK10590 ATP-dependent RNA hel 84.3 3 6.5E-05 49.6 8.4 12 924-935 344-355 (456)
454 PF09986 DUF2225: Uncharacteri 84.1 12 0.00025 39.6 11.7 74 308-382 118-198 (214)
455 PRK10941 hypothetical protein; 84.0 11 0.00024 41.3 11.8 70 213-283 190-259 (269)
456 KOG2471 TPR repeat-containing 83.6 1.6 3.5E-05 50.0 5.2 79 205-284 284-380 (696)
457 PF12862 Apc5: Anaphase-promot 83.4 8.2 0.00018 34.8 9.0 36 308-343 41-76 (94)
458 COG3914 Spy Predicted O-linked 82.9 26 0.00056 41.8 14.6 137 204-341 29-175 (620)
459 KOG4507 Uncharacterized conser 82.6 10 0.00022 44.7 11.1 120 221-341 196-316 (886)
460 PF15023 DUF4523: Protein of u 82.5 5.3 0.00012 38.4 7.3 73 878-958 83-159 (166)
461 KOG1166 Mitotic checkpoint ser 82.1 22 0.00047 45.7 14.8 117 238-360 34-161 (974)
462 PF04053 Coatomer_WDAD: Coatom 81.8 21 0.00046 42.1 13.9 131 172-334 298-428 (443)
463 PF08675 RNA_bind: RNA binding 81.7 5.6 0.00012 34.8 6.5 52 882-943 10-61 (87)
464 KOG0112 Large RNA-binding prot 81.3 0.41 8.8E-06 58.3 -0.6 71 877-949 368-439 (975)
465 PF09670 Cas_Cas02710: CRISPR- 81.3 1.1E+02 0.0024 35.3 21.0 131 206-339 134-272 (379)
466 KOG1166 Mitotic checkpoint ser 80.7 8.1 0.00018 49.4 10.4 118 204-323 34-164 (974)
467 PF11207 DUF2989: Protein of u 79.1 21 0.00045 37.0 10.9 78 288-369 121-198 (203)
468 smart00028 TPR Tetratricopepti 78.6 3.6 7.8E-05 27.2 3.9 29 310-338 3-31 (34)
469 PF11207 DUF2989: Protein of u 78.3 39 0.00084 35.1 12.6 98 227-327 97-197 (203)
470 PF00244 14-3-3: 14-3-3 protei 78.2 43 0.00093 36.0 13.7 54 324-377 142-197 (236)
471 PF09613 HrpB1_HrpK: Bacterial 77.6 24 0.00052 35.2 10.5 66 241-308 13-78 (160)
472 PRK12798 chemotaxis protein; R 77.4 1.5E+02 0.0032 34.4 21.3 194 210-416 87-287 (421)
473 PF12862 Apc5: Anaphase-promot 77.2 10 0.00022 34.3 7.3 62 319-381 9-73 (94)
474 KOG3807 Predicted membrane pro 77.0 92 0.002 34.5 15.4 149 242-410 188-338 (556)
475 KOG1920 IkappaB kinase complex 76.6 22 0.00048 45.6 12.1 58 206-266 910-967 (1265)
476 KOG1550 Extracellular protein 76.4 1.2E+02 0.0026 37.1 18.6 147 220-379 228-394 (552)
477 KOG1538 Uncharacterized conser 76.4 37 0.0008 40.7 13.0 148 242-414 674-832 (1081)
478 KOG4410 5-formyltetrahydrofola 76.3 8.2 0.00018 41.1 7.2 50 879-934 328-377 (396)
479 KOG1130 Predicted G-alpha GTPa 76.2 38 0.00082 38.6 12.5 118 221-339 165-306 (639)
480 KOG2068 MOT2 transcription fac 75.6 1 2.3E-05 49.3 0.5 79 881-960 77-162 (327)
481 TIGR02996 rpt_mate_G_obs repea 75.5 5.5 0.00012 29.9 4.1 32 226-257 4-35 (42)
482 PF14561 TPR_20: Tetratricopep 75.5 26 0.00057 31.4 9.4 44 224-267 8-51 (90)
483 TIGR02561 HrpB1_HrpK type III 74.9 65 0.0014 31.8 12.4 49 251-300 23-71 (153)
484 KOG2041 WD40 repeat protein [G 74.4 2.2E+02 0.0047 34.9 19.4 31 303-333 847-877 (1189)
485 smart00028 TPR Tetratricopepti 73.9 6 0.00013 26.0 4.0 27 240-266 3-29 (34)
486 PF10345 Cohesin_load: Cohesin 73.3 2.4E+02 0.0052 34.9 30.9 162 170-334 68-251 (608)
487 PF14534 DUF4440: Domain of un 73.3 12 0.00026 33.8 7.0 100 574-678 3-107 (107)
488 KOG0307 Vesicle coat complex C 73.2 2.8E+02 0.0062 35.8 23.7 83 354-452 606-688 (1049)
489 PF14561 TPR_20: Tetratricopep 73.1 35 0.00076 30.6 9.6 65 259-340 9-73 (90)
490 PF11767 SET_assoc: Histone ly 73.0 13 0.00029 31.2 6.3 56 891-956 10-66 (66)
491 KOG4285 Mitotic phosphoprotein 72.7 15 0.00032 39.8 8.0 69 881-957 197-266 (350)
492 PF07079 DUF1347: Protein of u 72.4 1.2E+02 0.0027 35.2 15.6 161 214-376 16-202 (549)
493 COG0790 FOG: TPR repeat, SEL1 72.3 1.6E+02 0.0034 32.4 20.3 185 218-419 55-270 (292)
494 COG2909 MalT ATP-dependent tra 72.2 2.8E+02 0.006 35.2 20.1 234 225-471 328-581 (894)
495 KOG2135 Proteins containing th 72.1 2.5 5.4E-05 48.2 2.4 62 894-962 386-447 (526)
496 PF03880 DbpA: DbpA RNA bindin 71.4 12 0.00026 32.2 6.0 69 882-958 1-74 (74)
497 KOG2591 c-Mpl binding protein, 70.6 6 0.00013 46.0 5.0 69 882-958 176-249 (684)
498 KOG1550 Extracellular protein 70.6 1.8E+02 0.0038 35.6 18.1 184 253-458 227-426 (552)
499 PF13374 TPR_10: Tetratricopep 70.3 9.8 0.00021 27.8 4.7 30 308-337 2-31 (42)
500 PRK06958 single-stranded DNA-b 70.2 13 0.00027 38.1 6.7 64 954-1017 104-167 (182)
No 1
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-54 Score=476.84 Aligned_cols=387 Identities=36% Similarity=0.565 Sum_probs=231.6
Q ss_pred CCccccccchHHHHHHhcccChhhhhccccCCceEEEEcCCcc-ccccchHHHHHHhhcCCCcce--eEEeeeccccCCC
Q 001755 566 AYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST-ESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNG 642 (1017)
Q Consensus 566 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~ss~~~~~g~~~-~~~~~~~~I~~~i~~l~~~~~--~i~~~d~q~s~~~ 642 (1017)
.-|..||+.||+|||++|++.|+.||+||.++|+++|.+.+.. ..+++.+.||++|++|+|..| +|+++|+|.|+++
T Consensus 11 ~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S~~~ 90 (419)
T KOG0116|consen 11 PTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQASLEK 90 (419)
T ss_pred CCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhhccC
Confidence 3577899999999999999999999999999999999987765 477888999999999999887 8999999999999
Q ss_pred ceEEEEEEEEEecCCccccceeEEEEEEEeCCeEEEEcceEEeecCCCccCCCCCCCCCCccCCCCCCCCCCCCccCcCC
Q 001755 643 GVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGLAA 722 (1017)
Q Consensus 643 ~ilv~V~G~~~~~~~~~~~~F~q~F~L~~~~~~y~V~nDifr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1017)
||+|+|+|.|++++. +.|+|+|||||++|+++|||+||||||+|+++.. +++.. ++. .+.+. .+ .
T Consensus 91 GvvI~VtG~lt~~~~-~rRkF~QtFfLapq~~~yfVlNDiFRfvde~~~~-----e~~~~--~vp----~~~~~--~~-~ 155 (419)
T KOG0116|consen 91 GVVIMVTGYLTNKDG-PRRKFSQTFFLAPQEKGYFVLNDIFRFVDEEFEP-----EANTD--EVP----EANPA--VV-V 155 (419)
T ss_pred CeEEEEEEEEEeCCC-cceEEEEEEEEeecCCceEEEechhhhccccccc-----ccccc--cCC----CCCcc--ee-e
Confidence 999999999999997 6999999999999999999999999999987611 11000 000 00000 00 0
Q ss_pred CCccchhhhhhccCccccCCccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccch
Q 001755 723 SDYVLEEEAREYVSSVHIEDDATDNYSLPEQQQDEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEPQRK 802 (1017)
Q Consensus 723 ~~~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~pk 802 (1017)
.....+ ...+++.+.+.+++...... .. ...++...+..+ ..++.+++.... ..+.. .|+. ++.+.+.+
T Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~-V~~~~~~~~~~~-~~~~~~ee~v~~-~~~~~--~p~~--~~~~~~~~ 224 (419)
T KOG0116|consen 156 SVEKAS-QLVEAVVESEPEPEPEPKAE---DE-VEVPEEATVEDE-AKEKTKEELVIQ-QTVSE--APAA--PQGDAPKK 224 (419)
T ss_pred cccccc-cccccccccCCCCccccccc---Cc-eecccccccccc-ccccCchhhccc-ccccC--CCcc--ccccccch
Confidence 000000 00000000000000000000 00 000000000000 000001000000 00000 1111 13456789
Q ss_pred hhhhHhhhccCCCCCccc-cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCc
Q 001755 803 TYASILRVSKSQSTSFVA-TQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEV 881 (1017)
Q Consensus 803 s~As~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~p~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1017)
+||+++..+....++... ..|....+. .+|...|.+++....+.+.... .+.+...-......
T Consensus 225 s~asv~~~~~~~~~~~~~~~~p~~~~~~-----~~p~~~~~~~~~s~~~~p~~~~-----------~~~n~~~~~~~~~~ 288 (419)
T KOG0116|consen 225 SFASVVKVLKKSAAVQQSKGSPPQIQPQ-----QQPSTKPQAERQSKPPSPVRES-----------KSGNSNNQEPRADG 288 (419)
T ss_pred hhhhhhhhcccccccceeccCCCccccc-----cCCccCcchhhccCCCCccccc-----------cccccCCcceeecc
Confidence 999998876654433211 111111000 0011111100000000000000 00011111223345
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEeccCC
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPN 961 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~r~~ 961 (1017)
.+|||+|||.+++.++|+++|+.||.|+..+|.++.+. ++..+||||+|++.++++.||.++...|++++|.|+++++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~-~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPG-GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccC-CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 66999999999999999999999999999999888743 44459999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001755 962 TGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRG 995 (1017)
Q Consensus 962 ~~~~~rg~~~g~grgg~~~~~~rg~~ggrg~gr~ 995 (1017)
.++.+..+++.++++|+++++||+++++||++|+
T Consensus 368 ~~g~~~~~~~~~~~~g~~~~~gr~~~~~~gg~~~ 401 (419)
T KOG0116|consen 368 FRGNGNNRSGRGNRGGGRGPGGRGRGGGRGGGRG 401 (419)
T ss_pred ccccccCcccccCCCCCCCCCCCCCCCCCCCCcC
Confidence 5543321112223344444445555554444444
No 2
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=100.00 E-value=2.5e-51 Score=460.46 Aligned_cols=461 Identities=39% Similarity=0.601 Sum_probs=381.0
Q ss_pred ceeeeeeeec-ccc----------CccCCCCcchhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHcccHHHHHHHH
Q 001755 10 VSICGCVCIS-SVD----------GYYLCPNNFFFLLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 78 (1017)
Q Consensus 10 ~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy 78 (1017)
|+-+|+.+|+ ||| .+.+||+. ||++||+|+.++|+||+|++||++||+||..++++.+|..||
T Consensus 101 Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~------lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iy 174 (577)
T KOG1258|consen 101 VFERGVQAIPLSVDLWLSYLAFLKNNNGDPET------LRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIY 174 (577)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCCCHHH------HHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHH
Confidence 6778999999 999 59999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchH
Q 001755 79 TRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEA 158 (1017)
Q Consensus 79 ~R~l~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1017)
+|+|++|+++|.+||..|++++++++++.+++.+++..++..|... +.....+ ...+....++..+.++.. .+++.
T Consensus 175 eRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~--~~~~~~~-~~~e~~~~~v~~~~~~s~-~l~~~ 250 (577)
T KOG1258|consen 175 ERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER--SKITHSQ-EPLEELEIGVKDSTDPSK-SLTEE 250 (577)
T ss_pred HHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh--hhccccc-ChhHHHHHHHhhccCccc-hhhHH
Confidence 9999999999999999999999999999999999986655444321 0010000 112223333444444332 23444
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 001755 159 E-ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY 237 (1017)
Q Consensus 159 ~-~l~~~i~~~~~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~ 237 (1017)
. .+.+++++++++|+.+.+.+.+||.||+.|+|||||+++++..++.+|+.|++|++..|+++++..+|+|||+.|.+|
T Consensus 251 ~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y 330 (577)
T KOG1258|consen 251 KTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY 330 (577)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh
Confidence 4 667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 001755 238 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 317 (1017)
Q Consensus 238 ~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~ 317 (1017)
.++|++|++|++..|+.+.|..++.+++++++++.+.++++++.|++..|+++.|+.+|+++..++ |+.+++-+.++++
T Consensus 331 ~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 331 DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINW 409 (577)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhH
Confidence 999999999999999999999999999999999999999999999999999999999999998886 9999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCC
Q 001755 318 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 397 (1017)
Q Consensus 318 e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~ 397 (1017)
++|.|+.+.+....+-......+.+.......++++++++.++..++.+.|+.++..+++..|.+..+|..+++|+..++
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 99999999999532222233334444455678899999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCchhhhhcchhhhc
Q 001755 398 SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFL 477 (1017)
Q Consensus 398 ~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~~~~~~kkr~~~~~~ 477 (1017)
.....+...-++...+...-+.....+..++ |++|.+.+|+.....+...++.+.|..++.....+....+..-
T Consensus 490 ~~~e~d~~e~~~~~~~~~~~~~~~~~~~~~k------~~ef~e~~g~~~~~~~~~~~~l~~~l~q~~~~~~~~~~~~s~~ 563 (577)
T KOG1258|consen 490 SGREYDLLEPIDWKELKMLIDFDDSRSSTDK------YIEFLEWFGIDHKGAQDERPHLKNFLIQRPDNFKKMDTLESRF 563 (577)
T ss_pred cchhhhhhhhHHHHHHhhhccccccccchHH------HHHHHHhccchhHhHhhchHHHHHHHhhccchhcccchHHHHh
Confidence 7666666666665554432222222233333 9999999999888888888988888766554444555555444
Q ss_pred cchHHHhhcc
Q 001755 478 ASERAKMAKS 487 (1017)
Q Consensus 478 ~~~~~k~~~~ 487 (1017)
.++..|....
T Consensus 564 ~~d~~~~~~~ 573 (577)
T KOG1258|consen 564 TNDPSKEALL 573 (577)
T ss_pred cCChhhhccc
Confidence 4444444433
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-36 Score=327.44 Aligned_cols=402 Identities=22% Similarity=0.292 Sum_probs=311.1
Q ss_pred CccCCCCcchhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHcccHHHHHHHHHH-HHhcchhhHHHHHHHHHHHhc
Q 001755 23 GYYLCPNNFFFLLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR-ILENPIQQLDRYFSSFKEFAA 101 (1017)
Q Consensus 23 ~~~~~~~~~~~~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy~R-~l~~P~~~~~~~~~~f~~~~~ 101 (1017)
+++++... +|++|||++.+-+. ...|..||+||.++++++++|.||.| ++.||--+-+.-|.+|++-.+
T Consensus 152 E~LgNi~g------aRqiferW~~w~P~----eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 152 EMLGNIAG------ARQIFERWMEWEPD----EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHhcccHH------HHHHHHHHHcCCCc----HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcC
Confidence 68899999 99999999999999 89999999999999999999999999 999996666666666777544
Q ss_pred cCCCcccCCHHHHHHHHHHHhhcCCccccccccccccCCCcccccCCCccc-CCcchHHHHHHH----HH--HHHHHHHH
Q 001755 102 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVS-AGLTEAEELEKY----IA--VREEMYKK 174 (1017)
Q Consensus 102 ~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----i~--~~~~~y~~ 174 (1017)
+ .. ..+.||..+++..+++...+-.... .+...+. +....+..|++| |. ..+++|++
T Consensus 222 ~--~~----------~aR~VyerAie~~~~d~~~e~lfva----FA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~ 285 (677)
T KOG1915|consen 222 N--VA----------LARSVYERAIEFLGDDEEAEILFVA----FAEFEERQKEYERARFIYKYALDHIPKGRAEELYKK 285 (677)
T ss_pred c--HH----------HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3 11 1236888777776521110000000 0000000 011223344554 21 12578888
Q ss_pred HHHHHHh---hhhHhhhh----ccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---------CH
Q 001755 175 AKEFDSK---IIGFETAI----RRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN---------YP 238 (1017)
Q Consensus 175 ~~~~~~~---~~~fE~~I----~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~---------~~ 238 (1017)
...++++ +..+|+.| +-.|......+|.+++.|..|+++++..|+.++++.+||||+...|- |.
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYI 365 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHH
Confidence 8888877 67788888 33566666678999999999999999999999999999999998874 45
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHH---------------
Q 001755 239 EYWIRYVLCMEA-SGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLV--------------- 299 (1017)
Q Consensus 239 ~lW~~ya~~l~~-~g~~e~A~~v~~rAl~~~~p~---~~~i~l~~a~~ee~~g~~~~Ar~iy~~~--------------- 299 (1017)
.+|++|+.|.+- ..+.+.++.+|++|+.+++++ ...+|+++|.|+.++.++..||+++..+
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence 699999999876 789999999999999977443 6789999999999998888888776643
Q ss_pred -----------------hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhh
Q 001755 300 -----------------HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 362 (1017)
Q Consensus 300 -----------------~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~ 362 (1017)
..+..|.++.+|++++.++..+|+.|+||.+|+-|+....-+ ....||..|++|+.. .
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld----mpellwkaYIdFEi~-~ 520 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD----MPELLWKAYIDFEIE-E 520 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc----cHHHHHHHhhhhhhh-c
Confidence 224578888899999999999999999999999888765432 124567889999887 9
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCC-------------hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHH
Q 001755 363 RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS-------------PKQIDFLEQLVDKFLMSNSDSPSTANAAERE 429 (1017)
Q Consensus 363 g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~-------------~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~ 429 (1017)
|.+++||.+|+++|+..+..+ +|+.++.||.+... +..+..+|++|++|+....+.. +.+.|.
T Consensus 521 ~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~---~KeeR~ 596 (677)
T KOG1915|consen 521 GEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST---PKEERL 596 (677)
T ss_pred chHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC---cHHHHH
Confidence 999999999999999988765 99999999974321 1256789999999998776642 478999
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 001755 430 ELSCVFLEFLGLFGDAQLIKKAEDRHARLF 459 (1017)
Q Consensus 430 ~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~ 459 (1017)
.|..+|.+|+..||+..+++.|..++-+.+
T Consensus 597 ~LLEaw~~~E~~~G~~~d~~~V~s~mPk~v 626 (677)
T KOG1915|consen 597 MLLEAWKNMEETFGTEGDVERVQSKMPKKV 626 (677)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHhccHHH
Confidence 999999999999999999999887766555
No 4
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=100.00 E-value=4.3e-31 Score=290.07 Aligned_cols=372 Identities=21% Similarity=0.300 Sum_probs=311.7
Q ss_pred cccCccCCCCcchhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHc---------ccHHHHHHHHHHHHhcchhhHH
Q 001755 20 SVDGYYLCPNNFFFLLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ---------QEWSRVAMIYTRILENPIQQLD 90 (1017)
Q Consensus 20 ~~~~~~~~~~~~~~~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~---------~~~~~~~~iy~R~l~~P~~~~~ 90 (1017)
+|-++.++-+. ..+.+-+.|+.++..+|+|.+|.++|+.||+|++.- +..+.||++|.|+|.+|+++++
T Consensus 95 YVR~~~~~~~~--~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 95 YVRETKGKLFG--YREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHccCcch--HHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 44467766666 677888999999999999999999999999999852 4568899999999999999999
Q ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchHHHHHHHHHHHHH
Q 001755 91 RYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE 170 (1017)
Q Consensus 91 ~~~~~f~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 170 (1017)
+.|++|..|.++.+ .++.+ |++..+-.
T Consensus 173 kLW~DY~~fE~~IN---~~tar--------------------------------------------------K~i~e~s~ 199 (656)
T KOG1914|consen 173 KLWKDYEAFEQEIN---IITAR--------------------------------------------------KFIGERSP 199 (656)
T ss_pred HHHHHHHHHHHHHH---HHHHH--------------------------------------------------HHHHhhCH
Confidence 99999998876521 11222 23333334
Q ss_pred HHHHHHHHHHhhhhHhhhhccCCcccCCC----CcchHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhcCCCH
Q 001755 171 MYKKAKEFDSKIIGFETAIRRPYFHVKPL----SVTELENWHNYLDFIERDGD--------FNKVVKLYERCLIACANYP 238 (1017)
Q Consensus 171 ~y~~~~~~~~~~~~fE~~I~r~y~~~~~l----~~~~l~~W~~yl~~e~~~g~--------~~~a~~lyeraL~~~p~~~ 238 (1017)
.|+++....+++...-++++|.-+.+.+. +-.++++|.+|++||.+++- -.|+..+|++||...+.++
T Consensus 200 ~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p 279 (656)
T KOG1914|consen 200 EYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP 279 (656)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCH
Confidence 55555555566667888887766665442 35578999999999987652 3588999999999999999
Q ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHhh
Q 001755 239 EYWIRYVLCMEASGS--------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD---IDGARAAYQLVHT 301 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~--------------~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~---~~~Ar~iy~~~~~ 301 (1017)
++|+.|+.|+...++ .++++++|+|++......+..++..++.+++..-+ .+....+|++++.
T Consensus 280 eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 280 EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHh
Confidence 999999999998777 88999999999997777788889999999987766 7888889998765
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCC
Q 001755 302 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 381 (1017)
Q Consensus 302 ~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~ 381 (1017)
..+-+..-+|+.+.++-+|...++.||.+|.+|.+..... ..+++.-|-+++.+.+|.+-|.+||+.+|+.+++
T Consensus 360 ~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~------hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d 433 (656)
T KOG1914|consen 360 IEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR------HHVFVAAALMEYYCSKDKETAFRIFELGLKKFGD 433 (656)
T ss_pred hhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc------chhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC
Confidence 5455556789999999999999999999999998876553 3577777888888899999999999999999999
Q ss_pred CHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 001755 382 SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 461 (1017)
Q Consensus 382 ~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~ 461 (1017)
++.+-+.|++|....+++ +++|.|||+++.. .++++..+++|.+||+||..+||...+.++.+|....|+.
T Consensus 434 ~p~yv~~YldfL~~lNdd---~N~R~LFEr~l~s------~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 434 SPEYVLKYLDFLSHLNDD---NNARALFERVLTS------VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred ChHHHHHHHHHHHHhCcc---hhHHHHHHHHHhc------cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 999999999999999887 7899999999986 3678888999999999999999999999999999999984
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.98 E-value=1.3e-29 Score=273.79 Aligned_cols=355 Identities=19% Similarity=0.254 Sum_probs=280.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHcccHHHHHHHHHHHHhc-chhhHHHHHHHHH---HHhccCCCcccC
Q 001755 34 LLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQQLDRYFSSFK---EFAASRPLSELR 109 (1017)
Q Consensus 34 ~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy~R~l~~-P~~~~~~~~~~f~---~~~~~~~~~~~~ 109 (1017)
+.++|+||||||.. |+..++||.+|++||+++++..++|.|++|++.+ | ..+++|-+|. +.+++ + .
T Consensus 89 ~~RARSv~ERALdv---d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP--RVdqlWyKY~ymEE~LgN--i---~ 158 (677)
T KOG1915|consen 89 IQRARSVFERALDV---DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP--RVDQLWYKYIYMEEMLGN--I---A 158 (677)
T ss_pred HHHHHHHHHHHHhc---ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhcc--c---H
Confidence 35799999999985 4668999999999999999999999999996665 4 6777766644 33333 1 1
Q ss_pred CHHHHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Q 001755 110 TAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAI 189 (1017)
Q Consensus 110 ~~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~~~~~~~~fE~~I 189 (1017)
-+| +||..=++-. | +...+..||.. -....++...|.-||+-+
T Consensus 159 ------gaR-qiferW~~w~-----------P---------------~eqaW~sfI~f----ElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 159 ------GAR-QIFERWMEWE-----------P---------------DEQAWLSFIKF----ELRYKEIERARSIYERFV 201 (677)
T ss_pred ------HHH-HHHHHHHcCC-----------C---------------cHHHHHHHHHH----HHHhhHHHHHHHHHHHHh
Confidence 022 4554333211 1 22334444421 123344555566677765
Q ss_pred ccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----------------------------------
Q 001755 190 RRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC----------------------------------- 234 (1017)
Q Consensus 190 ~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~----------------------------------- 234 (1017)
.- ..++.+|.+|+.|+.+.|+...++.+|+||+...
T Consensus 202 ~~---------HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 202 LV---------HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred ee---------cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1345688888888888888777777777777654
Q ss_pred ----------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 235 ----------------------------------------------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 268 (1017)
Q Consensus 235 ----------------------------------------------p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~ 268 (1017)
|.+.+.|+.|+.+.+..|+.+..+++|+||+.-.
T Consensus 273 ~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv 352 (677)
T KOG1915|consen 273 HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV 352 (677)
T ss_pred hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Confidence 7778999999999999999999999999999844
Q ss_pred cCC--------ChHHHHHHHHHHH-HcCCHHHHHHHHHHHhhhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001755 269 VKR--------LPEIHLFAARFKE-QNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNLEDAFSLYEQAI 335 (1017)
Q Consensus 269 ~p~--------~~~i~l~~a~~ee-~~g~~~~Ar~iy~~~~~~l~P~----~~~~~~~~a~~e~r~g~~e~A~~iye~al 335 (1017)
+|- .--+|++||.+++ ...+.+.+|++|+.++ ++-|. ...+|+.++.++.|+.++..||.++-.||
T Consensus 353 pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l-~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 353 PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL-DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 332 3447888998886 5689999999999976 46775 57799999999999999999999999999
Q ss_pred HhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhc
Q 001755 336 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 415 (1017)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~ 415 (1017)
-.+|. ..++-.|+.++.+ ++++|++|++|++.|+..|.+.-.|..|+.||.++++. +++|.+|+-|+..
T Consensus 432 G~cPK-------~KlFk~YIelElq-L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt---dRaRaifelAi~q 500 (677)
T KOG1915|consen 432 GKCPK-------DKLFKGYIELELQ-LREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT---DRARAIFELAISQ 500 (677)
T ss_pred ccCCc-------hhHHHHHHHHHHH-HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH---HHHHHHHHHHhcC
Confidence 99987 4588899999888 99999999999999999999999999999999999988 8899999999976
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 416 NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 416 ~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
.. .+....||.+|++|+-..|..+.++++|++++..-+..+
T Consensus 501 p~-------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 501 PA-------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred cc-------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 42 234456999999999999999999999999998766654
No 6
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.7e-28 Score=212.47 Aligned_cols=114 Identities=32% Similarity=0.570 Sum_probs=104.7
Q ss_pred cccccchHHHHHHhcccChhhhhccccCCceEEEEcCCccccccchHHHHHHhhcCCCcce--eEEeeeccccCCCceEE
Q 001755 569 AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGVLV 646 (1017)
Q Consensus 569 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~ss~~~~~g~~~~~~~~~~~I~~~i~~l~~~~~--~i~~~d~q~s~~~~ilv 646 (1017)
..||+.||++||.+++.++..|..+|.+. ||++|+|..++|+..|. +|+.+|||++| .|+++||||+++|||||
T Consensus 7 e~v~~~FvqhYY~~FD~dR~ql~~lY~~~-S~LTfEGqq~qG~~~Iv---eKl~sLpFqkiqh~IttvD~QPt~~g~ilv 82 (126)
T KOG2104|consen 7 EAVAKAFVQHYYSLFDNDRSQLGALYIDT-SMLTFEGQQIQGKDAIV---EKLTSLPFQKIQHSITTVDSQPTPDGGILV 82 (126)
T ss_pred HHHHHHHHHHHHHHhcCchhHhhhhhccc-ceeeEcchhhcchHHHH---HHHhcCChhhhhceeeecccccCCCCcEEE
Confidence 45999999999999999999999988766 88899999999887665 99999999987 69999999999999999
Q ss_pred EEEEEEEecCCccccceeEEEEEEEeC-CeEEEEcceEEeec
Q 001755 647 MVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFLD 687 (1017)
Q Consensus 647 ~V~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~V~nDifr~~~ 687 (1017)
+|+|.|+.+++ ++.+|+|+|+|.+.. ++|||.|||||+--
T Consensus 83 ~V~G~Lk~dEd-~~~~FsQvF~L~~n~~~~~~v~ndiFRLn~ 123 (126)
T KOG2104|consen 83 MVVGQLKLDED-PILRFSQVFLLKPNIQGSYYVFNDIFRLNL 123 (126)
T ss_pred EEeeeeeeccC-CccceeeEEEEeEcCCCCEEEEeeeEEEec
Confidence 99999999965 899999999999884 89999999999853
No 7
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=9.7e-25 Score=243.86 Aligned_cols=242 Identities=19% Similarity=0.193 Sum_probs=224.4
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
..|..-.+|.+.+.|+...|..+....+|++|+..||..+.+|++|+.-....|+.-.||.++.+|.+. .|++.+||++
T Consensus 545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~-~pnseeiwla 623 (913)
T KOG0495|consen 545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-NPNSEEIWLA 623 (913)
T ss_pred hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-CCCcHHHHHH
Confidence 455556799999999999999999999999999999999999999999999999999999999999995 4999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHH
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 358 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l 358 (1017)
...++....++++||.+|.++.. ..| ...+|++.++|++-+++.++|+.+++++++.++.. ..||+.++.++
T Consensus 624 avKle~en~e~eraR~llakar~-~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARS-ISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIE 695 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhc-cCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHH
Confidence 99999999999999999999864 355 47899999999999999999999999999999985 67999999998
Q ss_pred HHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 001755 359 HLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 438 (1017)
Q Consensus 359 ~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~f 438 (1017)
.+ .++++.||+.|...++.+|.+..+|+.++.+|...+.. -++|.+++++...+|++.. ||..-+.+
T Consensus 696 e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~---~rAR~ildrarlkNPk~~~---------lwle~Ir~ 762 (913)
T KOG0495|consen 696 EQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL---VRARSILDRARLKNPKNAL---------LWLESIRM 762 (913)
T ss_pred HH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch---hhHHHHHHHHHhcCCCcch---------hHHHHHHH
Confidence 77 99999999999999999999999999999999998755 7899999999999999853 89999999
Q ss_pred HHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 439 LGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 439 e~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
|.+.|+.+.+..+..++++.+|.+
T Consensus 763 ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999988875
No 8
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.92 E-value=4.7e-25 Score=210.62 Aligned_cols=115 Identities=43% Similarity=0.658 Sum_probs=104.2
Q ss_pred ccccccchHHHHHHhcccChhhhhccccCCceEEEEcC-CccccccchHHHHHHhhcCC--CcceeEEeeeccccCCCce
Q 001755 568 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDG-DSTESASSMLDIHSLVISLN--FTAIEIKTINSLGSWNGGV 644 (1017)
Q Consensus 568 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~ss~~~~~g-~~~~~~~~~~~I~~~i~~l~--~~~~~i~~~d~q~s~~~~i 644 (1017)
+.+||+.||++||++|+++|+.|++||.++|.|+ |+| ..+ .|..+|.++|++|| ..+++|.++|||++.+++|
T Consensus 2 ~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~-~~~~~~~---~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~~i 77 (119)
T cd00780 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLS-REGMKQV---TGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSGGV 77 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEE-ECCceEe---cCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCCCE
Confidence 4679999999999999999999999999999887 677 444 45677779999999 5577999999999999999
Q ss_pred EEEEEEEEEecCCccccceeEEEEEEEeCCeEEEEcceEEeec
Q 001755 645 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 687 (1017)
Q Consensus 645 lv~V~G~~~~~~~~~~~~F~q~F~L~~~~~~y~V~nDifr~~~ 687 (1017)
+|+|+|.|+.++. ++++|+|+|+|.+++++|||.||||||++
T Consensus 78 li~V~G~~~~~~~-~~~~F~q~F~L~~~~~~~~I~nD~fr~~~ 119 (119)
T cd00780 78 IVMVTGSLKLDEQ-PPRKFSQTFVLAPQNGGYFVLNDIFRFVD 119 (119)
T ss_pred EEEEEEEEEECCC-CceeEeEEEEEEecCCeEEEEeeEEEecC
Confidence 9999999999885 78999999999999999999999999985
No 9
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.92 E-value=3.6e-22 Score=223.50 Aligned_cols=380 Identities=18% Similarity=0.259 Sum_probs=280.7
Q ss_pred HHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHcccHHHHHHHHHH-HHhcchhhHHHHHHHHHHHhccCCCcccCCHHH
Q 001755 35 LICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR-ILENPIQQLDRYFSSFKEFAASRPLSELRTAEE 113 (1017)
Q Consensus 35 ~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy~R-~l~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~e 113 (1017)
..+...|||+|-..-. .++||.+|++|.+.|+...+.|+.|+| +...|.-+-++.|.-|..|+.++.+-+.
T Consensus 85 ~~vn~c~er~lv~mHk---mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPet----- 156 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHK---MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPET----- 156 (835)
T ss_pred HHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHH-----
Confidence 3478899999985444 489999999999999999999999999 7778999999999999999988665421
Q ss_pred HHHHHHHHhhcCCccccccccccccCCCcccccC-CCcccCC-c-chHHHHHHHHH----------HHHHHHHHHHHHHH
Q 001755 114 VDAAAVAVAAAPSETGAEVKANEEEVQPDATEQT-SKPVSAG-L-TEAEELEKYIA----------VREEMYKKAKEFDS 180 (1017)
Q Consensus 114 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~l~~~i~----------~~~~~y~~~~~~~~ 180 (1017)
+. -||..-+.... ...|+. ..+...+ . +-+..++++++ ....++....+++.
T Consensus 157 ---s~-rvyrRYLk~~P-----------~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 157 ---SI-RVYRRYLKVAP-----------EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred ---HH-HHHHHHHhcCH-----------HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 11 13332221111 000000 0000000 0 11222222221 11223333333322
Q ss_pred hh------hhHhh----hhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----------------
Q 001755 181 KI------IGFET----AIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC---------------- 234 (1017)
Q Consensus 181 ~~------~~fE~----~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~---------------- 234 (1017)
+. ..++. +|+| -.+.-..+|..+++++++.|.+++|+.+|+.++...
T Consensus 222 ~~p~~~~slnvdaiiR~gi~r-------ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 222 QNPDKVQSLNVDAIIRGGIRR-------FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF 294 (835)
T ss_pred hCcchhcccCHHHHHHhhccc-------CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence 21 11222 2222 112234899999999999999999999999998764
Q ss_pred --------------------------------------------------------------------------------
Q 001755 235 -------------------------------------------------------------------------------- 234 (1017)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (1017)
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHH
Confidence
Q ss_pred ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001755 235 ---------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTE 302 (1017)
Q Consensus 235 ---------p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~ 302 (1017)
..-..+|..|+.+++.+|+++.||.+|++|+.+.-+. ...+|..||.++.++.+++.|+++.++++.
T Consensus 375 ~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~- 453 (835)
T KOG2047|consen 375 KTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH- 453 (835)
T ss_pred HccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc-
Confidence 1112699999999999999999999999999865443 478999999999999999999999998752
Q ss_pred cCCC-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhC
Q 001755 303 TSPG-------------------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 363 (1017)
Q Consensus 303 l~P~-------------------~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g 363 (1017)
.|. ++.+|..|++++...|-++..+.+|++.|++--.. +.+.++||.||.. ..
T Consensus 454 -vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT------Pqii~NyAmfLEe-h~ 525 (835)
T KOG2047|consen 454 -VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT------PQIIINYAMFLEE-HK 525 (835)
T ss_pred -CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHh-hH
Confidence 333 35689999999999999999999999999987554 8999999999887 89
Q ss_pred CHHHHHHHHHHHhhhcC--CCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001755 364 NAEKARQILVDSLDHVQ--LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 441 (1017)
Q Consensus 364 ~~e~Ar~i~~~al~~~P--~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~ 441 (1017)
-++++.++|++.+.+++ .-.++|+.|+.--...-...+++++|.|||+||.. ++++.-+.|...|..||+.
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~-------Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG-------CPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999764 44579999887554443344689999999999984 5677888899999999999
Q ss_pred hCCHHHHHHHHHHHHHhcC
Q 001755 442 FGDAQLIKKAEDRHARLFL 460 (1017)
Q Consensus 442 ~Gd~~~~~~~~~r~~~~~~ 460 (1017)
+|-...+.++++|+....+
T Consensus 599 ~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 599 HGLARHAMSIYERATSAVK 617 (835)
T ss_pred hhHHHHHHHHHHHHHhcCC
Confidence 9999999999999766654
No 10
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=2.4e-22 Score=224.86 Aligned_cols=351 Identities=15% Similarity=0.178 Sum_probs=268.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHcccHHHHHHHHHH-HHhcchh-hHHHHHHHHHHHhccCCCcccCCH
Q 001755 34 LLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR-ILENPIQ-QLDRYFSSFKEFAASRPLSELRTA 111 (1017)
Q Consensus 34 ~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy~R-~l~~P~~-~~~~~~~~f~~~~~~~~~~~~~~~ 111 (1017)
++-+|.||-.+|...+. +-.||...+.||+.++..+.+..|++| +-.+|-. .||..|.+-+-..+. +-
T Consensus 532 ~~carAVya~alqvfp~---k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd-----v~-- 601 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPC---KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD-----VP-- 601 (913)
T ss_pred HHHHHHHHHHHHhhccc---hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC-----cH--
Confidence 56689999999999999 799999999999999999999999999 4455632 455555543333322 11
Q ss_pred HHHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc
Q 001755 112 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 191 (1017)
Q Consensus 112 ~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~~~~~~~~fE~~I~r 191 (1017)
+++ .+...+.+..+ + . ++ ++-..-++-..+.++...|..|-++-.
T Consensus 602 ----~ar-~il~~af~~~p--n-----------------------s-ee---iwlaavKle~en~e~eraR~llakar~- 646 (913)
T KOG0495|consen 602 ----AAR-VILDQAFEANP--N-----------------------S-EE---IWLAAVKLEFENDELERARDLLAKARS- 646 (913)
T ss_pred ----HHH-HHHHHHHHhCC--C-----------------------c-HH---HHHHHHHHhhccccHHHHHHHHHHHhc-
Confidence 111 12222222221 0 0 00 100000111223333333433333321
Q ss_pred CCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 192 PYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 271 (1017)
Q Consensus 192 ~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~ 271 (1017)
..+. ..+|.+++.|+.-.++.++|+.++|+||+.+|.+..+|+++++++++.++++.||..|...++ .+|.
T Consensus 647 ----~sgT----eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~ 717 (913)
T KOG0495|consen 647 ----ISGT----ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPN 717 (913)
T ss_pred ----cCCc----chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCC
Confidence 1222 249999999999999999999999999999999999999999999999999999999999998 4599
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHH
Q 001755 272 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 351 (1017)
Q Consensus 272 ~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~ 351 (1017)
+.-+|+.+++++++.|++-+||.+|+++.. .+|++..+|+..+.+|.|.|+.+.|..++-+|++.+|+. ..||
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarl-kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s------g~LW 790 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARL-KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS------GLLW 790 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHh-cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc------chhH
Confidence 999999999999999999999999999865 499999999999999999999999999999999999986 4466
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 001755 352 AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREEL 431 (1017)
Q Consensus 352 ~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l 431 (1017)
..-+.+ ...-++ +..+..||+.+-.++++.+..+.+.-.. .+++.+|+.|+++++..|++.. .
T Consensus 791 aEaI~l-e~~~~r----kTks~DALkkce~dphVllaia~lfw~e---~k~~kar~Wf~Ravk~d~d~GD---------~ 853 (913)
T KOG0495|consen 791 AEAIWL-EPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSE---KKIEKAREWFERAVKKDPDNGD---------A 853 (913)
T ss_pred HHHHHh-ccCccc----chHHHHHHHhccCCchhHHHHHHHHHHH---HHHHHHHHHHHHHHccCCccch---------H
Confidence 553333 332333 6777889999999999888888876553 4679999999999999999864 6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 432 SCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 432 ~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
|-.|..|+..+|+.++.+.++++....-|.+
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999988877765
No 11
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.91 E-value=2.8e-22 Score=215.92 Aligned_cols=365 Identities=16% Similarity=0.175 Sum_probs=276.8
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHH---------cccHHHHHHHHHHHHhcchhhHHHHHH
Q 001755 24 YYLCPNNFFFLLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILENPIQQLDRYFS 94 (1017)
Q Consensus 24 ~~~~~~~~~~~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~---------~~~~~~~~~iy~R~l~~P~~~~~~~~~ 94 (1017)
+..+.+. ....+|-++||..+..+|.|..|+.+|+.|++|... |+..+++|.+|.|+|.+|++++++.|+
T Consensus 122 ~n~~~tG-q~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~ 200 (660)
T COG5107 122 VNNLITG-QKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWK 200 (660)
T ss_pred hCccccc-chhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHH
Confidence 3334433 346778899999999999999999999999999875 346788999999999999999999999
Q ss_pred HHHHHhccCCCcccCCHHHHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchHHHHHHHHHHHHHHHHH
Q 001755 95 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 174 (1017)
Q Consensus 95 ~f~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~ 174 (1017)
.|..|.+. +. -+|+.+| .||..| +|++
T Consensus 201 dy~~fE~e--~N-~~TarKf---------------------vge~sp-----------------------------~ym~ 227 (660)
T COG5107 201 DYENFELE--LN-KITARKF---------------------VGETSP-----------------------------IYMS 227 (660)
T ss_pred HHHHHHHH--HH-HHHHHHH---------------------hcccCH-----------------------------HHHH
Confidence 99888754 11 1222221 122111 2222
Q ss_pred HHHHHHhhhhHhhhhccCCcc----cCCCCcchHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHhcCCCHHHHHH
Q 001755 175 AKEFDSKIIGFETAIRRPYFH----VKPLSVTELENWHNYLDFIERDG-------DFNKVVKLYERCLIACANYPEYWIR 243 (1017)
Q Consensus 175 ~~~~~~~~~~fE~~I~r~y~~----~~~l~~~~l~~W~~yl~~e~~~g-------~~~~a~~lyeraL~~~p~~~~lW~~ 243 (1017)
+....+++..+-+++++.-+. ...........|.+|++||.++| ...|+.-+|++++...+..+++|+.
T Consensus 228 ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~d 307 (660)
T COG5107 228 ARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFD 307 (660)
T ss_pred HHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 222223333344444331111 01122233467999999998765 2468889999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----------------CC-
Q 001755 244 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET-----------------SP- 305 (1017)
Q Consensus 244 ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l-----------------~P- 305 (1017)
|..++...++-+.|+...+|+.. .+|.+++.++..++..++-++.+.+|+++...+ +|
T Consensus 308 ys~Y~~~isd~q~al~tv~rg~~----~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e 383 (660)
T COG5107 308 YSEYLIGISDKQKALKTVERGIE----MSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFE 383 (660)
T ss_pred HHHHHhhccHHHHHHHHHHhccc----CCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCcc
Confidence 99999999999999998888765 567799999999999999999888888652111 12
Q ss_pred -----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001755 306 -----------GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 374 (1017)
Q Consensus 306 -----------~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~ 374 (1017)
...-+|+-+.+.-+|...++.||.+|-++.+..--. ..+++.-|.+++...|+..-|.+||+.
T Consensus 384 ~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~------h~vyi~~A~~E~~~~~d~~ta~~ifel 457 (660)
T COG5107 384 YSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG------HHVYIYCAFIEYYATGDRATAYNIFEL 457 (660)
T ss_pred ccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC------cceeeeHHHHHHHhcCCcchHHHHHHH
Confidence 112245557777788889999999999988765211 346666677777779999999999999
Q ss_pred HhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001755 375 SLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDR 454 (1017)
Q Consensus 375 al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r 454 (1017)
+|..+|++..+...|+.|....++. +++|.||++++...-+ ...+.+|+.|++||..+|+...+-.+.+|
T Consensus 458 Gl~~f~d~~~y~~kyl~fLi~inde---~naraLFetsv~r~~~-------~q~k~iy~kmi~YEs~~G~lN~v~sLe~r 527 (660)
T COG5107 458 GLLKFPDSTLYKEKYLLFLIRINDE---ENARALFETSVERLEK-------TQLKRIYDKMIEYESMVGSLNNVYSLEER 527 (660)
T ss_pred HHHhCCCchHHHHHHHHHHHHhCcH---HHHHHHHHHhHHHHHH-------hhhhHHHHHHHHHHHhhcchHHHHhHHHH
Confidence 9999999999999999999999877 7899999998876432 34577999999999999999999999999
Q ss_pred HHHhcCCC
Q 001755 455 HARLFLPH 462 (1017)
Q Consensus 455 ~~~~~~~~ 462 (1017)
..+++|-.
T Consensus 528 f~e~~pQe 535 (660)
T COG5107 528 FRELVPQE 535 (660)
T ss_pred HHHHcCcH
Confidence 99999864
No 12
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.89 E-value=2.6e-21 Score=231.49 Aligned_cols=246 Identities=18% Similarity=0.211 Sum_probs=225.6
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChH
Q 001755 200 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-A----NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 274 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~-p----~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~ 274 (1017)
+|+..-+|++|+.|.++.++++.|++++||||... + .-..+|+.|.+++...|.-+...++|+|||+.+ +-..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 57777799999999999999999999999999775 2 223599999999999999999999999999965 4468
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHH
Q 001755 275 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 354 (1017)
Q Consensus 275 i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~ 354 (1017)
+|+.+..+++..+.+++|.++|+..+..+. +...+|++|+.++.++.+-++|+.++.+|+...|..+| -.+..++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH----v~~Iskf 1606 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH----VEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh----HHHHHHH
Confidence 999999999999999999999999887655 78999999999999999999999999999999998766 6788899
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 001755 355 SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCV 434 (1017)
Q Consensus 355 a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~ 434 (1017)
|.++++ .||.+++|.+|+..|..+|...++|.-|+++|..+++. +.+|.||+|++.. .+++.++..++..
T Consensus 1607 AqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~---~~vR~lfeRvi~l------~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1607 AQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI---KYVRDLFERVIEL------KLSIKKMKFFFKK 1676 (1710)
T ss_pred HHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCH---HHHHHHHHHHHhc------CCChhHhHHHHHH
Confidence 999999 99999999999999999999999999999999999887 7899999999987 4789999999999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 435 FLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 435 ~l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
||+||..+||.+.+..+..|+.+.....
T Consensus 1677 wLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987554
No 13
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.86 E-value=1e-21 Score=187.74 Aligned_cols=113 Identities=35% Similarity=0.618 Sum_probs=102.7
Q ss_pred cccchHHHHHHhccc-ChhhhhccccCCceEEEEcCCccccccchHHHHHHhhcCCCc--ceeEEeeecc--ccCCCceE
Q 001755 571 VGSYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSL--GSWNGGVL 645 (1017)
Q Consensus 571 vg~~Fv~~YY~~l~~-~p~~l~~fY~~~ss~~~~~g~~~~~~~~~~~I~~~i~~l~~~--~~~i~~~d~q--~s~~~~il 645 (1017)
||+.||++||++|++ +|+.|++||+.++++++|+|+ ....|..+|.+++.+|+.+ .+.|+++||| ++.+++|+
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~--~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN--RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE--CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSEEE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc--hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCcEE
Confidence 688999999999999 999999999999999999998 3345566777999999999 5789999999 57899999
Q ss_pred EEEEEEEEecCCccccceeEEEEEEEeCCeEEEEcceEEe
Q 001755 646 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 685 (1017)
Q Consensus 646 v~V~G~~~~~~~~~~~~F~q~F~L~~~~~~y~V~nDifr~ 685 (1017)
|+|+|.++.++..+.+.|+|+|+|.+.+++|+|.||||||
T Consensus 79 i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd~~r~ 118 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEeeEEEC
Confidence 9999999999874469999999999999999999999997
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-19 Score=200.77 Aligned_cols=360 Identities=15% Similarity=0.095 Sum_probs=280.7
Q ss_pred ChhHHHHHHHHHHHcccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhcCCccccccc
Q 001755 54 SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVK 133 (1017)
Q Consensus 54 s~~lW~~Yi~fE~~~~~~~~~~~iy~R~l~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~ 133 (1017)
....+.-|.+..++.+++.++..+|++.++.--...+.|.+.=-.+......+... .+|..++....
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~----------~~~~~alqlnP--- 181 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAV----------QCFFEALQLNP--- 181 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccH----------HHHHHHHhcCc---
Confidence 56777778888888899999999999977765445666665544343333222111 11211111110
Q ss_pred cccccCCCcccccCCCc-----ccCCcchHHHHH-HH----------HHHHHHHHHHHHHHHHhhhhHhhhhccCCcccC
Q 001755 134 ANEEEVQPDATEQTSKP-----VSAGLTEAEELE-KY----------IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVK 197 (1017)
Q Consensus 134 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~-~~----------i~~~~~~y~~~~~~~~~~~~fE~~I~r~y~~~~ 197 (1017)
+.......+ +.-++.++..-+ |- |+...-+|+...+....|..||++++
T Consensus 182 --------~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk------- 246 (966)
T KOG4626|consen 182 --------DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK------- 246 (966)
T ss_pred --------chhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc-------
Confidence 000000000 000122221110 11 33345678888999999999999986
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHH
Q 001755 198 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 277 (1017)
Q Consensus 198 ~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l 277 (1017)
+||+-++.+.+++..+.+.+.+++|+..|+|||...|++...+-+++..+.++|.+|.|...|+||+++. |+.++.+.
T Consensus 247 -ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~ 324 (966)
T KOG4626|consen 247 -LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYN 324 (966)
T ss_pred -CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999965 99999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHH
Q 001755 278 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 357 (1017)
Q Consensus 278 ~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~ 357 (1017)
++|..+...|++++|.++|.+++ .++|++.++..+++++++..|.++.|..+|+++++..|.- .....++|.+
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL-~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~------aaa~nNLa~i 397 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKAL-RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF------AAAHNNLASI 397 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh------hhhhhhHHHH
Confidence 99999999999999999999987 5899999999999999999999999999999999999875 4456677777
Q ss_pred HHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHH
Q 001755 358 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLE 437 (1017)
Q Consensus 358 l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~ 437 (1017)
+.+ +|++++|..+|+.+|.+.|.-.+.+.++.+-....++. ..+.++|.+||..+|.-.+ -..-...
T Consensus 398 ~kq-qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v---~~A~q~y~rAI~~nPt~Ae---------AhsNLas 464 (966)
T KOG4626|consen 398 YKQ-QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV---SAAIQCYTRAIQINPTFAE---------AHSNLAS 464 (966)
T ss_pred HHh-cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH---HHHHHHHHHHHhcCcHHHH---------HHhhHHH
Confidence 544 99999999999999999999999999999888877655 7899999999998876321 2333344
Q ss_pred HHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 438 FLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 438 fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
...+-|++..+-..|+.++++-|+-+
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCCc
Confidence 56778999999999999999988754
No 15
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.84 E-value=4.1e-18 Score=188.46 Aligned_cols=368 Identities=16% Similarity=0.211 Sum_probs=277.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHcccHHHHHHHHHH-HHhcchhhHHHHHHHHHHHhccCCCcccCCHH
Q 001755 34 LLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR-ILENPIQQLDRYFSSFKEFAASRPLSELRTAE 112 (1017)
Q Consensus 34 ~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy~R-~l~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~ 112 (1017)
+.++|.+||+.+...+. +++.|..||+-|...+++++|..||.| +.++-..++|..|-.|-...++.... ..
T Consensus 35 ~~~~R~~YEq~~~~FP~---s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~----~r 107 (656)
T KOG1914|consen 35 IDKVRETYEQLVNVFPS---SPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFG----YR 107 (656)
T ss_pred HHHHHHHHHHHhccCCC---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcch----HH
Confidence 56799999999999999 999999999999999999999999999 66666668999999988877652211 11
Q ss_pred HHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchHHHHHHHHHHHH-----HHHHHHHHHHHhhhhHhh
Q 001755 113 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVRE-----EMYKKAKEFDSKIIGFET 187 (1017)
Q Consensus 113 e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-----~~y~~~~~~~~~~~~fE~ 187 (1017)
+- ++.-|..+++.++ . | ......+-.|+.-.+ ..|...+.+..-|..|.+
T Consensus 108 ~~---m~qAy~f~l~kig----~------d------------i~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 108 EK---MVQAYDFALEKIG----M------D------------IKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred HH---HHHHHHHHHHHhc----c------C------------cccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 11 1122444444332 0 0 011223334443222 336666677777788888
Q ss_pred hhccCCcccCCCCcchHHHHHHHHHHHHHcC-------------ChHHHHHHHHHHHHhc-------C-----------C
Q 001755 188 AIRRPYFHVKPLSVTELENWHNYLDFIERDG-------------DFNKVVKLYERCLIAC-------A-----------N 236 (1017)
Q Consensus 188 ~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g-------------~~~~a~~lyeraL~~~-------p-----------~ 236 (1017)
+|..|..... ++|..|..||..-+ .+..|+.+|+...... | .
T Consensus 163 al~tPm~nlE-------kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~ 235 (656)
T KOG1914|consen 163 ALVTPMHNLE-------KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQ 235 (656)
T ss_pred HhcCccccHH-------HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHH
Confidence 8877665543 79999999995432 3556777776654332 1 1
Q ss_pred CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCC--------------HHHHHH
Q 001755 237 YPEYWIRYVLCMEASGS--------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD--------------IDGARA 294 (1017)
Q Consensus 237 ~~~lW~~ya~~l~~~g~--------~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~--------------~~~Ar~ 294 (1017)
..++|.+|+.|+..++- ..+..-+|++++.. ++.++++|+.++.++...++ -++|+.
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 24789999999887532 23455668999974 58999999999999988877 789999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001755 295 AYQLVHTETSPGLLEAIIKHANMERRLGN---LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 371 (1017)
Q Consensus 295 iy~~~~~~l~P~~~~~~~~~a~~e~r~g~---~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i 371 (1017)
+|+++...+.-.+..++..++..+...-+ .+....+|++++.....+- -.+|++|.++..+ ...++.||.+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-----tLv~~~~mn~irR-~eGlkaaR~i 388 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-----TLVYCQYMNFIRR-AEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-----ceehhHHHHHHHH-hhhHHHHHHH
Confidence 99998776666678889999999877655 7888999999998765442 3467889999777 8899999999
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001755 372 LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 451 (1017)
Q Consensus 372 ~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~ 451 (1017)
|.+|-+..-...+++..-|.+|-.+..+ -+.+-++|+..|+.++|.+. .-..|++|+...++..+++.+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD--~~~AfrIFeLGLkkf~d~p~---------yv~~YldfL~~lNdd~N~R~L 457 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKD--KETAFRIFELGLKKFGDSPE---------YVLKYLDFLSHLNDDNNARAL 457 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCC--hhHHHHHHHHHHHhcCCChH---------HHHHHHHHHHHhCcchhHHHH
Confidence 9999887666668999888888776443 25689999999999999864 678999999999999999999
Q ss_pred HHHHHHh
Q 001755 452 EDRHARL 458 (1017)
Q Consensus 452 ~~r~~~~ 458 (1017)
++|..+.
T Consensus 458 FEr~l~s 464 (656)
T KOG1914|consen 458 FERVLTS 464 (656)
T ss_pred HHHHHhc
Confidence 9999887
No 16
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.83 E-value=1.8e-18 Score=194.20 Aligned_cols=356 Identities=17% Similarity=0.240 Sum_probs=258.1
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHcCCCCC---ChhHHHHHHHHHHHcccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Q 001755 24 YYLCPNNFFFLLICFRLFERGLAYVGTDYL---SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 100 (1017)
Q Consensus 24 ~~~~~~~~~~~~~iR~~fEral~~~G~d~~---s~~lW~~Yi~fE~~~~~~~~~~~iy~R~l~~P~~~~~~~~~~f~~~~ 100 (1017)
.-++|.. +-.+|..|+..+-.--- -+.||..|.+|-..+++++.+|.||++++++|....+....-|..+.
T Consensus 359 ~e~~~~~------~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 359 YEGNAAE------QINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA 432 (835)
T ss_pred hcCChHH------HHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 4455877 88899999986532111 48999999999999999999999999999999886655555555554
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001755 101 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS 180 (1017)
Q Consensus 101 ~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~~~~ 180 (1017)
.- + +..+.+++|++ +.+.+... |. .+ .+.. |.... -++
T Consensus 433 em----E-lrh~~~~~Al~-lm~~A~~v------------P~------~~---------~~~~--------yd~~~-pvQ 470 (835)
T KOG2047|consen 433 EM----E-LRHENFEAALK-LMRRATHV------------PT------NP---------ELEY--------YDNSE-PVQ 470 (835)
T ss_pred HH----H-HhhhhHHHHHH-HHHhhhcC------------CC------ch---------hhhh--------hcCCC-cHH
Confidence 22 1 11233433332 11111100 00 00 0000 00000 000
Q ss_pred hhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001755 181 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 260 (1017)
Q Consensus 181 ~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v 260 (1017)
.+ + -..+.+|..|+|+++..|.++....+|+|.|..---.+.+-++||.||+.+.-++++-.+
T Consensus 471 ~r--l---------------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 471 AR--L---------------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred HH--H---------------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 00 0 012459999999999999999999999999998877899999999999999999999999
Q ss_pred HHHHHHhhc-CCChHHHHHH-HHHHHHcC--CHHHHHHHHHHHhhhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001755 261 LARATHVFV-KRLPEIHLFA-ARFKEQNG--DIDGARAAYQLVHTETSPGLLE-AIIKHANMERRLGNLEDAFSLYEQAI 335 (1017)
Q Consensus 261 ~~rAl~~~~-p~~~~i~l~~-a~~ee~~g--~~~~Ar~iy~~~~~~l~P~~~~-~~~~~a~~e~r~g~~e~A~~iye~al 335 (1017)
|+|.+.+|. |...++|..| -.|-.+.| .++.||.+|++++..+.|.+.. +++.|+.||.+.|-...|.++|++|-
T Consensus 534 YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999884 3567899887 44445555 6899999999998754455544 58899999999999999999999988
Q ss_pred HhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH--HHHHHHHHHhhCCChhHHHHHHHHHHHHh
Q 001755 336 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP--LLEALIHFESIQSSPKQIDFLEQLVDKFL 413 (1017)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~--lw~~~a~~E~~~~~~~~~~~ar~l~e~al 413 (1017)
...+... -..++.+++.-|. . .=.+-..|.+|++|++..|++.. +.+++++||...|.. ++||.+|.-+-
T Consensus 614 ~~v~~a~-~l~myni~I~kaa---e-~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEi---dRARaIya~~s 685 (835)
T KOG2047|consen 614 SAVKEAQ-RLDMYNIYIKKAA---E-IYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEI---DRARAIYAHGS 685 (835)
T ss_pred hcCCHHH-HHHHHHHHHHHHH---H-HhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhH---HHHHHHHHhhh
Confidence 7655321 1122333333222 2 33567889999999999998864 899999999999876 88999997653
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 001755 414 MSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 459 (1017)
Q Consensus 414 ~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~ 459 (1017)
+ .++|..-.++|+.|-+||-+|||.+.++..++..+.+.
T Consensus 686 q-------~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsvq 724 (835)
T KOG2047|consen 686 Q-------ICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSVQ 724 (835)
T ss_pred h-------cCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3 34555567799999999999999999998886655443
No 17
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.79 E-value=9.5e-20 Score=163.46 Aligned_cols=112 Identities=26% Similarity=0.453 Sum_probs=101.0
Q ss_pred ccchHHHHHHhcccChhhhhccccCCceEEEEcCCccccccchHHHHHHhhcCCCcceeEEeeeccccCCC------ceE
Q 001755 572 GSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNG------GVL 645 (1017)
Q Consensus 572 g~~Fv~~YY~~l~~~p~~l~~fY~~~ss~~~~~g~~~~~~~~~~~I~~~i~~l~~~~~~i~~~d~q~s~~~------~il 645 (1017)
+..||+-||..|++++..|.+||.++|+++ |||+.+.|.+.+ .+.+.-||.++++|.++||||.+++ +||
T Consensus 16 A~eFv~~YY~smD~rR~~i~rlY~~~atlv-WNGn~v~g~esl---s~ff~~LPsS~~qi~~lD~Qpv~dqat~~q~~vL 91 (139)
T KOG4353|consen 16 AEEFVNVYYSSMDKRRRGIGRLYLDNATLV-WNGNPVSGTESL---SEFFNMLPSSEFQINDLDCQPVHDQATGSQTTVL 91 (139)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhccceEE-EcCCcchhHHHH---HHHHHhCCCccccccccccccchhhcccccceEE
Confidence 568999999999999999999999999997 999988777554 4888889999999999999997754 399
Q ss_pred EEEEEEEEecCCccccceeEEEEEEEeCCeEE----EEcceEEeecC
Q 001755 646 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYF----VLNDIFHFLDE 688 (1017)
Q Consensus 646 v~V~G~~~~~~~~~~~~F~q~F~L~~~~~~y~----V~nDifr~~~~ 688 (1017)
|+|+|.|+.++. ..|.|.|||.|..+...|- |..|||||.|-
T Consensus 92 vvvsGtVkFdG~-k~r~F~qt~ll~~e~~~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 92 VVVSGTVKFDGN-KQRVFNQTFLLTAEDPPFKTVWKVASDCFRFQDW 137 (139)
T ss_pred EEEeeeEEEcCC-ccccccceeEEeecCCccchhhhhhhhhhhhhhc
Confidence 999999999997 7999999999999987666 99999999873
No 18
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=4.4e-16 Score=180.53 Aligned_cols=339 Identities=17% Similarity=0.175 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHcCCCCC-ChhHHHHHHHHHHHcc---cHHHHHHHHHHHHhcchhhHHHHHHHHHHHhccCCCcccCC
Q 001755 35 LICFRLFERGLAYVGTDYL-SFPLWDKYIEYEYMQQ---EWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRT 110 (1017)
Q Consensus 35 ~~iR~~fEral~~~G~d~~-s~~lW~~Yi~fE~~~~---~~~~~~~iy~R~l~~P~~~~~~~~~~f~~~~~~~~~~~~~~ 110 (1017)
+..|.+|+++|..+|+|+. +..+|.+|++||+.+- ..+.+..+|.|.|++|+-..-+.|++++. ...|-+.
T Consensus 207 k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~-sk~h~~~---- 281 (881)
T KOG0128|consen 207 KKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQ-SKAHVYD---- 281 (881)
T ss_pred hhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHH-HhcchHH----
Confidence 3499999999999999999 7899999999999862 23569999999999995444444443333 2221111
Q ss_pred HHHHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhc
Q 001755 111 AEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIR 190 (1017)
Q Consensus 111 ~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~~~~~~~~fE~~I~ 190 (1017)
.+. +.. ......++++ +..||+.+.
T Consensus 282 -~~~------------------~~~-------------------~~a~~~l~~~-----------------~~~~e~~~q 306 (881)
T KOG0128|consen 282 -VET------------------KKL-------------------DDALKNLAKI-----------------LFKFERLVQ 306 (881)
T ss_pred -HHh------------------ccH-------------------HHHHHHHHHH-----------------HHHHHHHhh
Confidence 000 000 0011222222 222555443
Q ss_pred cCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhc
Q 001755 191 RPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFV 269 (1017)
Q Consensus 191 r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~-~g~~e~A~~v~~rAl~~~~ 269 (1017)
.++.-.+.|..|++|+...|+.-++...++|++.-.+...++|+.|..|+.. .+-.+.+..++-|++. .+
T Consensus 307 --------~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R-~c 377 (881)
T KOG0128|consen 307 --------KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR-SC 377 (881)
T ss_pred --------hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc-CC
Confidence 3455568999999999999999999999999999999999999999999876 5666777888999997 55
Q ss_pred CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhhcCCC
Q 001755 270 KRLPEIHLFAARFKEQNGD-IDGARAAYQLVHTETSPGLLEAIIKHANMERRLG------NLEDAFSLYEQAIAIEKGKE 342 (1017)
Q Consensus 270 p~~~~i~l~~a~~ee~~g~-~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g------~~e~A~~iye~al~~~~~~~ 342 (1017)
|....+|-.+-..+++.+. +......|.+.+.. -..+++.+..+.++.+ +++..++.|..|...+....
T Consensus 378 p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~ 453 (881)
T KOG0128|consen 378 PWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELY 453 (881)
T ss_pred chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHh
Confidence 7777778777655555543 33334444443321 1223344443334433 56677888888887665322
Q ss_pred c--cCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH-HHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001755 343 H--SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP-LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 343 ~--~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~-lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~ 419 (1017)
. ..+...++..||.+++..++++++||.|++..+.....+.. .|+.++++|...++. ..+|.++.+++....
T Consensus 454 ~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~---~~~R~~~R~ay~~~~-- 528 (881)
T KOG0128|consen 454 GDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDG---PSARKVLRKAYSQVV-- 528 (881)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCc---hhHHHHHHHHHhcCc--
Confidence 1 12335677889999999999999999999999998888888 999999999998877 778998888887643
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 001755 420 PSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 455 (1017)
Q Consensus 420 ~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~ 455 (1017)
++++-.++...|..|+..+|+.+.+-.+..+.
T Consensus 529 ----~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 529 ----DPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred ----CchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 34455778999999999999988776655443
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=9.4e-15 Score=179.73 Aligned_cols=259 Identities=15% Similarity=0.173 Sum_probs=217.8
Q ss_pred HHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 001755 177 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL 256 (1017)
Q Consensus 177 ~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~ 256 (1017)
.+...+..|++++... .+.+.....|..++.++...|+++.|+..|+++|...|.+...|+.++.++...|++++
T Consensus 309 ~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 309 SYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred hHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 3444455677776431 34567778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001755 257 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 336 (1017)
Q Consensus 257 A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~ 336 (1017)
|...|++++++. |+++.+|+.++.++...|++++|+..|++++ .++|++..+|+.++.++.++|++++|+.+|++++.
T Consensus 384 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal-~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 384 AEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI-DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999965 9999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred hhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHH-------HHHHhhCCChhHHHHHHHHH
Q 001755 337 IEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL-------IHFESIQSSPKQIDFLEQLV 409 (1017)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~-------a~~E~~~~~~~~~~~ar~l~ 409 (1017)
..|.. +.++..++.++.. .|++++|++.|+++++..|.+...|... +.+.... .+.+.+..++
T Consensus 462 ~~P~~------~~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~---~~~~eA~~~~ 531 (615)
T TIGR00990 462 NFPEA------PDVYNYYGELLLD-QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK---QDFIEAENLC 531 (615)
T ss_pred hCCCC------hHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh---hhHHHHHHHH
Confidence 98876 6678888888777 9999999999999999998765433222 1121222 3458899999
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 001755 410 DKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 461 (1017)
Q Consensus 410 e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~ 461 (1017)
++++...|++. ..+..+...+...|+.+.+.+.++++.++.+.
T Consensus 532 ~kAl~l~p~~~---------~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 532 EKALIIDPECD---------IAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHhcCCCcH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 99998877652 13555677778899999999999999988654
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=1e-16 Score=178.95 Aligned_cols=263 Identities=13% Similarity=0.090 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 249 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~ 249 (1017)
.+|++...+...++.|+.+|. ++|..++.|.+++..+...|+.+.|..+|..||..+|....+...++.++.
T Consensus 124 N~~kerg~~~~al~~y~~aie--------l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIE--------LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHh--------cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 445555565666666666664 688889999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001755 250 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 329 (1017)
Q Consensus 250 ~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~ 329 (1017)
..|++++|...|.+|+++. |...-+|..++-....+|++..|+..|+++. .++|+++++|+++++.+...+.+++|..
T Consensus 196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-kldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-KLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhh-cCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 9999999999999999965 8888899999999999999999999999986 5899999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHH
Q 001755 330 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLV 409 (1017)
Q Consensus 330 iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~ 409 (1017)
+|.+|+...|+. ...+-++|-..+. +|.+|-|...|+++|+..|.-++.|.+++.-....|.. .++..+|
T Consensus 274 ~Y~rAl~lrpn~------A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V---~ea~~cY 343 (966)
T KOG4626|consen 274 CYLRALNLRPNH------AVAHGNLACIYYE-QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV---TEAVDCY 343 (966)
T ss_pred HHHHHHhcCCcc------hhhccceEEEEec-cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch---HHHHHHH
Confidence 999999998876 4455666666555 99999999999999999999999999999888877665 7789999
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 001755 410 DKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 461 (1017)
Q Consensus 410 e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~ 461 (1017)
.++|...|+.+.. +.-|-. .....|.++.+-.++..+.+.+|+
T Consensus 344 nkaL~l~p~hada-----m~NLgn----i~~E~~~~e~A~~ly~~al~v~p~ 386 (966)
T KOG4626|consen 344 NKALRLCPNHADA-----MNNLGN----IYREQGKIEEATRLYLKALEVFPE 386 (966)
T ss_pred HHHHHhCCccHHH-----HHHHHH----HHHHhccchHHHHHHHHHHhhChh
Confidence 9999988887543 222222 233456677777777777777765
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.71 E-value=1e-14 Score=179.40 Aligned_cols=216 Identities=11% Similarity=0.071 Sum_probs=188.1
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHH
Q 001755 197 KPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 276 (1017)
Q Consensus 197 ~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~ 276 (1017)
+.++|.....|..++..+...|++++|+..|+++|...|+++++|+.++.++...|++++|...|++++.+. |.+...|
T Consensus 358 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 358 IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 345777888999999999999999999999999999999999999999999999999999999999999965 8999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHH
Q 001755 277 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 356 (1017)
Q Consensus 277 l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~ 356 (1017)
+.+|.++.++|++++|+..|++++ ...|++..+|..++.++...|++++|+..|++++.+.+...........++..+.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCK-KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 999999999999999999999987 4699999999999999999999999999999999998764321111112233333
Q ss_pred HHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCC
Q 001755 357 FLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 417 (1017)
Q Consensus 357 ~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~ 417 (1017)
.++...|++++|+.+|+++++.+|++...|..++.+....+.. +.+..+|++++....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~---~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV---DEALKLFERAAELAR 573 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHhc
Confidence 3444479999999999999999999999999999999988776 889999999987643
No 22
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=2.1e-16 Score=155.02 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=76.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
.+++|||+|||+++++++|+++|++||.|+++.| +.++.+++++|||||+|++.++|+.||+. ++..|+|+.|+|+++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKV-IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4689999999999999999999999999999976 56888999999999999999999999986 899999999999998
Q ss_pred cCCCC
Q 001755 959 RPNTG 963 (1017)
Q Consensus 959 r~~~~ 963 (1017)
+++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.71 E-value=2.6e-14 Score=183.14 Aligned_cols=261 Identities=12% Similarity=0.053 Sum_probs=207.3
Q ss_pred HHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001755 171 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 250 (1017)
Q Consensus 171 ~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~ 250 (1017)
+|....++...+..|++.+.. +|.+...|..++..+...|++++|..+|++++..+|.+...|+.++.++..
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 444445555556666666542 445566888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 330 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~i 330 (1017)
.|++++|..+++++.... |.++.++...+.++...|++++|.+.|++++. ..|+. ..+..++.++.+.|++++|...
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK-RAPSS-QNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCc-hHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888888754 77888888888888888899999999988764 47765 7778888888888999999999
Q ss_pred HHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 001755 331 YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVD 410 (1017)
Q Consensus 331 ye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e 410 (1017)
|++++...+++ ..++..++.++.. .|++++|..+|+++++..|++..++..++.+....++ ..+..+++
T Consensus 759 ~~~~l~~~~~~------~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~ 827 (899)
T TIGR02917 759 LEAWLKTHPND------AVLRTALAELYLA-QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAE 827 (899)
T ss_pred HHHHHHhCCCC------HHHHHHHHHHHHH-CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHH
Confidence 99888887765 5566777777666 8999999999999999999988888888888777665 23788888
Q ss_pred HHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 411 KFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 411 ~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
+++...|+++. ++..+...+...|+.+.+..+++++.+..+..
T Consensus 828 ~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 828 KALKLAPNIPA---------ILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHhhCCCCcH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 88888777643 45556666777899999999999999988753
No 24
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.70 E-value=1.1e-15 Score=183.91 Aligned_cols=217 Identities=17% Similarity=0.225 Sum_probs=196.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 224 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR----LPEIHLFAARFKEQNGDIDGARAAYQLV 299 (1017)
Q Consensus 224 ~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~----~~~i~l~~a~~ee~~g~~~~Ar~iy~~~ 299 (1017)
..-|+|.+...|+..-+|++|+.++.+.++++.||++++|||..+.++ ...+|+.+..+|...|.-+...++|+|+
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999977554 5679999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc
Q 001755 300 HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 300 ~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~ 379 (1017)
+.-.+| ..++..+..++.+.+.+++|.++|+..++.+... ..+|+.|+.||.+ +.+-++||.++.+||+..
T Consensus 1524 cqycd~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~------~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1524 CQYCDA--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT------RKVWIMYADFLLR-QNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHhcch--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch------hhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhc
Confidence 864444 6889999999999999999999999999999843 6799999999998 999999999999999999
Q ss_pred CC--CHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 001755 380 QL--SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 457 (1017)
Q Consensus 380 P~--~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~ 457 (1017)
|. +..+...+|.||...+++ ++.|.+||..|...|. |.+||..|++.+..+|+.+.++.+++|...
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDa---eRGRtlfEgll~ayPK---------RtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDA---ERGRTLFEGLLSAYPK---------RTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCc---hhhHHHHHHHHhhCcc---------chhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99 566999999999999998 8899999999988765 567999999999999999999999999887
Q ss_pred hcCC
Q 001755 458 LFLP 461 (1017)
Q Consensus 458 ~~~~ 461 (1017)
+--.
T Consensus 1663 l~l~ 1666 (1710)
T KOG1070|consen 1663 LKLS 1666 (1710)
T ss_pred cCCC
Confidence 6544
No 25
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.70 E-value=4.8e-14 Score=180.61 Aligned_cols=237 Identities=14% Similarity=0.063 Sum_probs=117.9
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 001755 202 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 281 (1017)
Q Consensus 202 ~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~ 281 (1017)
.+...|..++.++...|++++|+.+|++++...|.+..+|..++.++...|++++|+.+|++++... |.++..|..++.
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555555555555555555555532 445555555555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHh
Q 001755 282 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 361 (1017)
Q Consensus 282 ~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~ 361 (1017)
++...|++++|..+|++++ ...|++..+|..++.++...|++++|..+++.+....+.. ...+..++..+..
T Consensus 644 ~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~- 715 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRAL-ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA------ALGFELEGDLYLR- 715 (899)
T ss_pred HHHHcCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC------hHHHHHHHHHHHH-
Confidence 5555555555555555544 2355555555555555555555555555555555444332 2233334444333
Q ss_pred hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001755 362 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 441 (1017)
Q Consensus 362 ~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~ 441 (1017)
.|++++|.++|++++...|++ ..+..++.+....+.. +.+...+++++...|++. .++.........
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~~~~~---------~~~~~la~~~~~ 782 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNT---AEAVKTLEAWLKTHPNDA---------VLRTALAELYLA 782 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHH
Confidence 555555555555555555544 3344444444444433 344445555554444331 122233333444
Q ss_pred hCCHHHHHHHHHHHHHhcC
Q 001755 442 FGDAQLIKKAEDRHARLFL 460 (1017)
Q Consensus 442 ~Gd~~~~~~~~~r~~~~~~ 460 (1017)
.|+.+.+..++++..+..|
T Consensus 783 ~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred CcCHHHHHHHHHHHHHhCC
Confidence 4555555555555554444
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.68 E-value=5.9e-14 Score=183.95 Aligned_cols=240 Identities=12% Similarity=0.051 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 284 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee 284 (1017)
..|...++.+...|++++|+.+|+++|...|+++.+|+.++.++...|++++|..+|++++... |.++..++.++.++.
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3456667777788999999999999999999999999999999999999999999999999855 889999998888888
Q ss_pred HcCCHHHHHHHHHHHh---------------------------------------hhcCCCcHHHHHHHHHHHHHcCCHH
Q 001755 285 QNGDIDGARAAYQLVH---------------------------------------TETSPGLLEAIIKHANMERRLGNLE 325 (1017)
Q Consensus 285 ~~g~~~~Ar~iy~~~~---------------------------------------~~l~P~~~~~~~~~a~~e~r~g~~e 325 (1017)
..++.++|+.+|+++. ....|.+..+++.++.++.+.|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888888877776531 1136777888899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHH
Q 001755 326 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFL 405 (1017)
Q Consensus 326 ~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~a 405 (1017)
+|+.+|+++++..|++ ...+..++.++.. .|++++|+++|+++++..|++..++..++......++. +.+
T Consensus 621 ~A~~~y~~al~~~P~~------~~a~~~la~~~~~-~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~---~eA 690 (1157)
T PRK11447 621 AARAAYQRVLTREPGN------ADARLGLIEVDIA-QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT---AAA 690 (1157)
T ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH---HHH
Confidence 9999999999998876 5677888888776 89999999999999999999999888888888777665 788
Q ss_pred HHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 001755 406 EQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 458 (1017)
Q Consensus 406 r~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~ 458 (1017)
.++|++++...++++.. .....++.....+....|+.+.+...+++++..
T Consensus 691 ~~~~~~al~~~~~~~~~---~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPS---MESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HHHHHHHhhhCccCCcc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998877665432 112334555577888899999999999888653
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=4.7e-13 Score=175.57 Aligned_cols=260 Identities=15% Similarity=0.114 Sum_probs=187.4
Q ss_pred HHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH--HH----------
Q 001755 174 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE--YW---------- 241 (1017)
Q Consensus 174 ~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~--lW---------- 241 (1017)
...++...+..|+++|+ ++|.+.+.|..++..+...|++++|+..|++++...|.+.. .|
T Consensus 281 ~~g~~~~A~~~l~~aL~--------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVR--------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34444455556666664 46677789999999999999999999999999999887653 23
Q ss_pred H--HHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHH--
Q 001755 242 I--RYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM-- 317 (1017)
Q Consensus 242 ~--~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~-- 317 (1017)
. ..+..+...|++++|+..|++++.+. |.+..+++.++.++...|++++|++.|++++ .++|++..++..++.+
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL-~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQAL-RMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Confidence 2 33556667899999999999999865 8889999999999999999999999999987 4688887776655444
Q ss_pred ----------------------------------------HHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHH
Q 001755 318 ----------------------------------------ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 357 (1017)
Q Consensus 318 ----------------------------------------e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~ 357 (1017)
+...|++++|+.+|+++++..|++ ..++..++.+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~------~~~~~~LA~~ 504 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS------VWLTYRLAQD 504 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Confidence 334678888888888888888775 4566777777
Q ss_pred HHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHH-------------------------
Q 001755 358 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF------------------------- 412 (1017)
Q Consensus 358 l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~a------------------------- 412 (1017)
+.. .|++++|..+|+++++..|.+...+..++.+....+.. +.+..+++++
T Consensus 505 ~~~-~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~---~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 505 LRQ-AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRD---RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 666 88888888888888888888887776666554444333 2222222221
Q ss_pred ---------------hhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 413 ---------------LMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 413 ---------------l~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
+...|+++ .++..+.......|+.+.+..++++.++.-|++
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~---------~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~ 636 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPST---------RIDLTLADWAQQRGDYAAARAAYQRVLTREPGN 636 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCc---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 11122221 123344555677788899999999888887764
No 28
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.2e-16 Score=153.02 Aligned_cols=129 Identities=34% Similarity=0.482 Sum_probs=94.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
.++|||||||.++.+.+|+++|.+||.|..|.+ +++. .+.+||||+|+++.+|+.||.. +|..++|..|+||+.+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieL--K~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIEL--KNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEe--ccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 489999999999999999999999999999664 3432 2568999999999999999998 7999999999999998
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC--------C-CCCCCCCCCCCCCCCCCCCCCC
Q 001755 960 PNTGSTSRGGRR-GRGRGSYQTDAPRGRFGGR--------G-LGRGSAQDGGDYNRSRGNGFYQ 1013 (1017)
Q Consensus 960 ~~~~~~~rg~~~-g~grgg~~~~~~rg~~ggr--------g-~gr~~~~~g~~~~~~~g~g~~~ 1013 (1017)
.-+.++.++|+. |+|+||.++++.+|+-..| | ...++|++.++.||..|..+|.
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfa 145 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFA 145 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeee
Confidence 755444333322 3333322211111110001 1 1457788899999988888774
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.66 E-value=4e-13 Score=165.34 Aligned_cols=263 Identities=10% Similarity=-0.058 Sum_probs=207.7
Q ss_pred HHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001755 171 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 250 (1017)
Q Consensus 171 ~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~ 250 (1017)
++.........+..|++++. ++|.+...|..++..+...|+++.|+..|++++...|.+..+|...+. +..
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~--------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~ 189 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWL--------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLN 189 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHH--------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH
Confidence 34444555555666777664 466777889999999999999999999999999999998888876644 566
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH----
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED---- 326 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~---- 326 (1017)
.|++++|..++++++....+.....+...+..+...|++++|...|++++ .++|++..++..++.++.+.|++++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al-~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL-ARGLDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 88999999999988876533444455566777888899999999999987 4689999999999999999999885
Q ss_pred HHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHH
Q 001755 327 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLE 406 (1017)
Q Consensus 327 A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar 406 (1017)
|+..|++++...|+. ..++..++..+.. .|++++|..+|+++++.+|++..++..++......+.. +.+.
T Consensus 269 A~~~~~~Al~l~P~~------~~a~~~lg~~l~~-~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~---~eA~ 338 (656)
T PRK15174 269 AAEHWRHALQFNSDN------VRIVTLYADALIR-TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY---TAAS 338 (656)
T ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH---HHHH
Confidence 899999999988875 5677888888777 89999999999999999999998888888888877766 7788
Q ss_pred HHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 407 QLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 407 ~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
..|++++...|++.. ........+...|+.+++.++++++.+..|+.
T Consensus 339 ~~l~~al~~~P~~~~---------~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 339 DEFVQLAREKGVTSK---------WNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHhCccchH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 888888887766421 12222445677899999999999988887764
No 30
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.65 E-value=1.3e-13 Score=156.88 Aligned_cols=347 Identities=13% Similarity=0.147 Sum_probs=235.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHcccHHHHHHHHHH-HHhcchhhHHHHHHHHHHHhccCCCcccCCHH
Q 001755 34 LLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR-ILENPIQQLDRYFSSFKEFAASRPLSELRTAE 112 (1017)
Q Consensus 34 ~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy~R-~l~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~ 112 (1017)
+..+|.+|...|...|+ ++.+|.+|.++|...++.+++..||+| ++.+|+ +.+.|.. |..++.+.... ++
T Consensus 61 ~~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~-SvdlW~~-Y~~f~~n~~~d----~~ 131 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPL-SVDLWLS-YLAFLKNNNGD----PE 131 (577)
T ss_pred HHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh-HHHHHHH-HHHHHhccCCC----HH
Confidence 56699999999999999 999999999999999999999999999 999995 4444433 33344332111 11
Q ss_pred HHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHh-hhhHhhhhcc
Q 001755 113 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK-IIGFETAIRR 191 (1017)
Q Consensus 113 e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~~~~~-~~~fE~~I~r 191 (1017)
.+ +..|+.+.+..+ ..+-....+.+||... ..++..+. -..||+-|..
T Consensus 132 ~l----r~~fe~A~~~vG----------------------~dF~S~~lWdkyie~e-----n~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 132 TL----RDLFERAKSYVG----------------------LDFLSDPLWDKYIEFE-----NGQKSWKRVANIYERILEI 180 (577)
T ss_pred HH----HHHHHHHHHhcc----------------------cchhccHHHHHHHHHH-----hccccHHHHHHHHHHHHhh
Confidence 12 123444444433 1112233455565321 11111112 1347777765
Q ss_pred CCcccCCCCcchHHHHHHHHHH-----------------------------------------HHHc-CChHHHHHHHHH
Q 001755 192 PYFHVKPLSVTELENWHNYLDF-----------------------------------------IERD-GDFNKVVKLYER 229 (1017)
Q Consensus 192 ~y~~~~~l~~~~l~~W~~yl~~-----------------------------------------e~~~-g~~~~a~~lyer 229 (1017)
|-++.. ...+.|..+++- .-.. +..+.......+
T Consensus 181 P~~~~~----~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~ 256 (577)
T KOG1258|consen 181 PLHQLN----RHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKR 256 (577)
T ss_pred hhhHhH----HHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHH
Confidence 444432 223344444332 1000 001111111111
Q ss_pred HHHhc--------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHH
Q 001755 230 CLIAC--------------------------------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 277 (1017)
Q Consensus 230 aL~~~--------------------------------p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l 277 (1017)
.+... +....-|..|+.+.+..|+++.+...|+||+-. |....++|+
T Consensus 257 ~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWi 335 (577)
T KOG1258|consen 257 IVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWI 335 (577)
T ss_pred HHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHH
Confidence 11110 223478999999999999999999999999964 478999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHH
Q 001755 278 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 357 (1017)
Q Consensus 278 ~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~ 357 (1017)
.++++.+..|+.+-|..++.+++.-..|..+.+.+.++.|+...||++.|+.+|++.....++. ..+-..++.+
T Consensus 336 ky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~------v~~~l~~~~~ 409 (577)
T KOG1258|consen 336 KYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL------VEVVLRKINW 409 (577)
T ss_pred HHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch------hhhHHHHHhH
Confidence 9999999999999999999999877789999999999999999999999999999999988765 4566778889
Q ss_pred HHHhhCCHHHHH---HHHHHHhhhcCCC---HHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 001755 358 LHLVSRNAEKAR---QILVDSLDHVQLS---KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREEL 431 (1017)
Q Consensus 358 l~~~~g~~e~Ar---~i~~~al~~~P~~---~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l 431 (1017)
+++ .|+.+.+. .++.....-.-.. ..++..++.|-....+. .+.++.++..++...|++- .+
T Consensus 410 e~r-~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d--~~~a~~~l~~~~~~~~~~k---------~~ 477 (577)
T KOG1258|consen 410 ERR-KGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED--ADLARIILLEANDILPDCK---------VL 477 (577)
T ss_pred HHH-hcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC--HHHHHHHHHHhhhcCCccH---------HH
Confidence 888 99999998 4444443322111 23777777777665332 4778999999988887763 37
Q ss_pred HHHHHHHHHhhC
Q 001755 432 SCVFLEFLGLFG 443 (1017)
Q Consensus 432 ~~~~l~fe~~~G 443 (1017)
+..++.|+...+
T Consensus 478 ~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 478 YLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhCC
Confidence 777888876665
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.60 E-value=5.5e-13 Score=164.16 Aligned_cols=256 Identities=10% Similarity=0.007 Sum_probs=207.4
Q ss_pred HHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 001755 177 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL 256 (1017)
Q Consensus 177 ~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~ 256 (1017)
+....+..|++.+. ++|.+...|..++..+...|+++.|+..|++++...|.+..+|..++.++...|++++
T Consensus 91 ~~~~A~~~l~~~l~--------~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 91 QPDAVLQVVNKLLA--------VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred CHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHH
Confidence 33344555666553 5777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001755 257 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP-GLLEAIIKHANMERRLGNLEDAFSLYEQAI 335 (1017)
Q Consensus 257 A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P-~~~~~~~~~a~~e~r~g~~e~A~~iye~al 335 (1017)
|..+|++++... |.++.++..++. +...|++++|..+|++++. ..| .....+...+..+.+.|++++|+..|++++
T Consensus 163 A~~~~~~~~~~~-P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~-~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 163 AISLARTQAQEV-PPRGDMIATCLS-FLNKSRLPEDHDLARALLP-FFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHh-cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999888754 777887766544 6778999999999998764 343 334444556777888999999999999999
Q ss_pred HhhcCCCccCcHHHHHHHHHHHHHHhhCCHHH----HHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHH
Q 001755 336 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK----ARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDK 411 (1017)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~----Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~ 411 (1017)
...++. ..++..++..+.. .|++++ |+.+|+++++.+|++..+|..++.+....+.. +.+..++++
T Consensus 240 ~~~p~~------~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~---~eA~~~l~~ 309 (656)
T PRK15174 240 ARGLDG------AALRRSLGLAYYQ-SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN---EKAIPLLQQ 309 (656)
T ss_pred hcCCCC------HHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHH
Confidence 988765 6677788888777 898885 89999999999999999999999999888766 778999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 412 FLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 412 al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
++...|+++. ++..+...+...|+.+.+..++++..+..|+.
T Consensus 310 al~l~P~~~~---------a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 310 SLATHPDLPY---------VRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9998887642 45556667778899999999999888877654
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.60 E-value=1.7e-12 Score=150.85 Aligned_cols=231 Identities=17% Similarity=0.180 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-----HHHHHHH
Q 001755 171 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-----EYWIRYV 245 (1017)
Q Consensus 171 ~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~-----~lW~~ya 245 (1017)
+|.....+.+.+..|++.+.. ++.....|..++..+...|++++|+.+|++++...|... .+|..++
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 444445555555667776642 445567899999999999999999999999999887653 3677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHcCCH
Q 001755 246 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-LEAIIKHANMERRLGNL 324 (1017)
Q Consensus 246 ~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~-~~~~~~~a~~e~r~g~~ 324 (1017)
..+...|++++|..+|+++++.. |.....++.++.++...|++++|.++|++++. ..|.+ ..++..++.++.+.|++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCH
Confidence 88888999999999999999865 88889999999999999999999999999874 46765 45678889999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhC--C-ChhH
Q 001755 325 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ--S-SPKQ 401 (1017)
Q Consensus 325 e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~--~-~~~~ 401 (1017)
++|..+|++++...++. ..+..++.++.+ .|++++|+.+|+++++..|++..+...+..+.... + ..+.
T Consensus 266 ~~A~~~l~~~~~~~p~~-------~~~~~la~~~~~-~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 266 AEGLEFLRRALEEYPGA-------DLLLALAQLLEE-QEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHHHHHHHHHHHhCCCc-------hHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhH
Confidence 99999999999987753 234677888777 99999999999999999999775543333322222 1 2234
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 001755 402 IDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 402 ~~~ar~l~e~al~~~~~~ 419 (1017)
++.+++++++.+...|++
T Consensus 338 ~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHHHHHhCCCCE
Confidence 566777777788777775
No 33
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.60 E-value=3.6e-13 Score=148.99 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=85.3
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH
Q 001755 356 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF 435 (1017)
Q Consensus 356 ~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~ 435 (1017)
+|+++ .+.+++||++|.+.....|-+..++..+++||..+.... +.++|.+|++++..++.++ +||.-|
T Consensus 468 ~~~~e-~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~---------~lw~~y 536 (568)
T KOG2396|consen 468 DWAYE-SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADS---------DLWMDY 536 (568)
T ss_pred HHHHH-hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCCh---------HHHHHH
Confidence 45455 778999999999999999999999999999998876553 7899999999999998553 389999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 436 LEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 436 l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
+.+|..+|..+++-.+++|+++.+.+.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHhhChh
Confidence 999999999999999999999998653
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=4.2e-14 Score=158.48 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=72.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccC--eEEEEEec
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEER 958 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g--~~l~Ve~~ 958 (1017)
++|||+|||..+|+++|+++|++||.|+.|.| ++++.+|+++|||||+|.+.++|++||+. ++..+.| ++|+|.++
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGKYGQIVQKNI-LRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHhcCCEEEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 68999999999999999999999999999886 56888999999999999999999999998 7887765 67899887
Q ss_pred cCCCC
Q 001755 959 RPNTG 963 (1017)
Q Consensus 959 r~~~~ 963 (1017)
..+..
T Consensus 273 ~~~~~ 277 (346)
T TIGR01659 273 EEHGK 277 (346)
T ss_pred Ccccc
Confidence 76443
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.56 E-value=2.8e-12 Score=149.01 Aligned_cols=258 Identities=11% Similarity=0.012 Sum_probs=209.4
Q ss_pred HHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHc
Q 001755 176 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----PEYWIRYVLCMEAS 251 (1017)
Q Consensus 176 ~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~----~~lW~~ya~~l~~~ 251 (1017)
......+..|++++. ++|.+...|..++.++...|++++|+.+|++++...... ...|..++..+...
T Consensus 49 ~~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 49 EQPDKAIDLFIEMLK--------VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred CChHHHHHHHHHHHh--------cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344445666777764 356777899999999999999999999999998753322 35789999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCc-----HHHHHHHHHHHHHcCCHHH
Q 001755 252 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-----LEAIIKHANMERRLGNLED 326 (1017)
Q Consensus 252 g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~-----~~~~~~~a~~e~r~g~~e~ 326 (1017)
|+++.|..+|+++++. .|.....+..++.++...|++++|++.|+++.. ..|.. ...+..++.++.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999985 477788999999999999999999999999764 45543 2356778888899999999
Q ss_pred HHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCH-HHHHHHHHHHhhCCChhHHHHH
Q 001755 327 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK-PLLEALIHFESIQSSPKQIDFL 405 (1017)
Q Consensus 327 A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~-~lw~~~a~~E~~~~~~~~~~~a 405 (1017)
|+.+|+++++..+.. ...+..++.++.+ .|++++|.++|+++++..|.+. .++..++......+.. +.+
T Consensus 199 A~~~~~~al~~~p~~------~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~---~~A 268 (389)
T PRK11788 199 ARALLKKALAADPQC------VRASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE---AEG 268 (389)
T ss_pred HHHHHHHHHhHCcCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH---HHH
Confidence 999999999987764 4566777888777 9999999999999999888764 4677788777777665 778
Q ss_pred HHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 406 EQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 406 r~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
..++++++...|+.. +...+...+...|+.+.+.+++++..+..|+..
T Consensus 269 ~~~l~~~~~~~p~~~----------~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 269 LEFLRRALEEYPGAD----------LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHHHHHHHhCCCch----------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 889999988766531 335667778889999999999999999988753
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2e-14 Score=159.24 Aligned_cols=237 Identities=19% Similarity=0.216 Sum_probs=116.1
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHH
Q 001755 200 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 279 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~ 279 (1017)
++.+...|..++++....++++.|+..|++++...+.++....+++.+ ...+++++|..+++++.+. ..++..+..+
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~ 116 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSA 116 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHH
Confidence 466678999999999999999999999999999999999999999998 6788999999999999874 3567888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHH
Q 001755 280 ARFKEQNGDIDGARAAYQLVHTETS--PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 357 (1017)
Q Consensus 280 a~~ee~~g~~~~Ar~iy~~~~~~l~--P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~ 357 (1017)
+.++...++++++..+++++.. .. +.+..+|+.++.++.+.|+.++|+.+|+++++..|++ ..+...++.+
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------~~~~~~l~~~ 189 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEE-LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------PDARNALAWL 189 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHH
Confidence 9999999999999999999653 23 6778999999999999999999999999999999987 5677777777
Q ss_pred HHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHH
Q 001755 358 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLE 437 (1017)
Q Consensus 358 l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~ 437 (1017)
+.. .|+.++++.+++...+..|.++.+|..++......+.. +.+..+|++++...|+++. +...|.+
T Consensus 190 li~-~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~---~~Al~~~~~~~~~~p~d~~---------~~~~~a~ 256 (280)
T PF13429_consen 190 LID-MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY---EEALEYLEKALKLNPDDPL---------WLLAYAD 256 (280)
T ss_dssp HCT-TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H---HHHHHHHHHHHHHSTT-HH---------HHHHHHH
T ss_pred HHH-CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc---ccccccccccccccccccc---------ccccccc
Confidence 665 89999999999999999899999999999999888877 8899999999999998753 5678889
Q ss_pred HHHhhCCHHHHHHHHHHHHHhc
Q 001755 438 FLGLFGDAQLIKKAEDRHARLF 459 (1017)
Q Consensus 438 fe~~~Gd~~~~~~~~~r~~~~~ 459 (1017)
.+...|..+.+..+.+++.+.+
T Consensus 257 ~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 257 ALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HHT-------------------
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999998877654
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.54 E-value=3.1e-12 Score=154.94 Aligned_cols=202 Identities=12% Similarity=0.048 Sum_probs=168.3
Q ss_pred HhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHH---------HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001755 180 SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE---------RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 250 (1017)
Q Consensus 180 ~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~---------~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~ 250 (1017)
..+..|+++| .++|+....|..++.++. ..+++++|...+++++...|++.+.|..++.++..
T Consensus 279 ~A~~~~~~Al--------~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 279 QALKLLTQCV--------NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHH--------hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3455566665 467888888877776543 22457899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 330 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~i 330 (1017)
.|++++|..+|++|+++. |+++.+|+.++.++...|++++|...|++++ +++|.+...++.++.++...|++++|+..
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al-~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL-KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 999999999999999965 9999999999999999999999999999986 57999887766666677778999999999
Q ss_pred HHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCC
Q 001755 331 YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 397 (1017)
Q Consensus 331 ye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~ 397 (1017)
|++++...+... +..+..++.++.. .|++++|+..+++++...|.+...+..++......+
T Consensus 429 ~~~~l~~~~p~~-----~~~~~~la~~l~~-~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 429 GDELRSQHLQDN-----PILLSMQVMFLSL-KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccccC-----HHHHHHHHHHHHh-CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 999998753321 5566677777666 999999999999999999888878877776655554
No 38
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.54 E-value=4.6e-14 Score=155.38 Aligned_cols=148 Identities=18% Similarity=0.264 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHH
Q 001755 309 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 388 (1017)
Q Consensus 309 ~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~ 388 (1017)
-+|+.|+++.+|.+.++.||.+|++|++..... +.+|+.+|.+|+...++.+.|++||+.+|+.+|.+..+|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 479999999999999999999999998543322 68999999999996788888999999999999999999999
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCchh
Q 001755 389 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAE-REELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSE 467 (1017)
Q Consensus 389 ~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~-~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~~~~~ 467 (1017)
|++|+...++. +++|.+||+++...+. +. ...||..|++||..+||.+.+.++++|..+.+++...+..
T Consensus 76 Y~~~l~~~~d~---~~aR~lfer~i~~l~~-------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 76 YLDFLIKLNDI---NNARALFERAISSLPK-------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHTT-H---HHHHHHHHHHCCTSSC-------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHhCcH---HHHHHHHHHHHHhcCc-------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999998755 8899999999987443 33 5779999999999999999999999999999998654444
Q ss_pred hhhcc
Q 001755 468 LRKRH 472 (1017)
Q Consensus 468 ~kkr~ 472 (1017)
...|-
T Consensus 146 f~~ry 150 (280)
T PF05843_consen 146 FSDRY 150 (280)
T ss_dssp HHCCT
T ss_pred HHHHh
Confidence 44443
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.53 E-value=2e-12 Score=131.00 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 285 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~ 285 (1017)
.-..++.=+.+.|++..|.+.+|+||+.+|++...|...+.++...|..+.|.+.|++|+.+. |++.+++.+++.|++.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 445555556789999999999999999999999999999999999999999999999999965 9999999999999999
Q ss_pred cCCHHHHHHHHHHHhhh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCC
Q 001755 286 NGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 364 (1017)
Q Consensus 286 ~g~~~~Ar~iy~~~~~~-l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~ 364 (1017)
+|.+++|...|++++.. ..+.....|.+.+-+-.+.|+++.|+..|+++++..++. +.....+++.+++ .|+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~-~~~ 188 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------PPALLELARLHYK-AGD 188 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC------ChHHHHHHHHHHh-ccc
Confidence 99999999999998742 124456689999999999999999999999999999987 4566778888888 999
Q ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCCh
Q 001755 365 AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 399 (1017)
Q Consensus 365 ~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~ 399 (1017)
+-.||..+++.....+-+.+...--|.|+...|+.
T Consensus 189 y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 189 YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccH
Confidence 99999999999999888888777788999998876
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=3.7e-12 Score=135.18 Aligned_cols=200 Identities=12% Similarity=0.092 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001755 204 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 283 (1017)
Q Consensus 204 l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e 283 (1017)
...|..++..+...|++++|+..|++++...|.+...|..++.++...|++++|...|++++... |.+..++..++.++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 46888889989999999999999999999999999999999999999999999999999999965 88899999999999
Q ss_pred HHcCCHHHHHHHHHHHhhh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhh
Q 001755 284 EQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 362 (1017)
Q Consensus 284 e~~g~~~~Ar~iy~~~~~~-l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~ 362 (1017)
...|++++|...|++++.. ..+.....+..++.++.+.|++++|...|++++...+.. ...+..++.+++. .
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~-~ 182 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR------PESLLELAELYYL-R 182 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHH-c
Confidence 9999999999999998742 135567789999999999999999999999999998765 4567788888777 9
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhh
Q 001755 363 RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 414 (1017)
Q Consensus 363 g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~ 414 (1017)
|++++|..++++++...|.+...+..++.+....++. +.++.+.+....
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~ 231 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDV---AAAQRYGAQLQK 231 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH---HHHHHHHHHHHh
Confidence 9999999999999999888888887888887776655 556666665543
No 41
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.53 E-value=1.4e-12 Score=131.99 Aligned_cols=206 Identities=15% Similarity=0.132 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 318 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e 318 (1017)
.+.+.++.-++..|++..|+.-+++||+ +.|++...|+.+|.++...|+.+.|.+.|++++ .++|++-+++.+|+.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~-~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl-sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALE-HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL-SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcCCCccchhhhhhHHH
Confidence 5677888888899999999999999999 559999999999999999999999999999997 57999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCC
Q 001755 319 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 398 (1017)
Q Consensus 319 ~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~ 398 (1017)
+.+|.+++|...|++|+...---.. ...+.+.+-.-.+ .|+.+.|++.|+++|+.+|+.+.....++.++...++
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~----s~t~eN~G~Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEP----SDTLENLGLCALK-AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCc----chhhhhhHHHHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 9999999999999999986543322 2344454444455 9999999999999999999999999999999988876
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 399 PKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 399 ~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
. -.++..+++.....+-+.+ -...-++++..+||.+.+.+...++.++||...
T Consensus 189 y---~~Ar~~~~~~~~~~~~~A~---------sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 189 Y---APARLYLERYQQRGGAQAE---------SLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred c---hHHHHHHHHHHhcccccHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 6 6688999998776553221 223457899999999999999999999999763
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.53 E-value=1.2e-11 Score=155.27 Aligned_cols=228 Identities=9% Similarity=-0.059 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHcCCHHHH
Q 001755 221 NKVVKLYERCLIACANYPEYW-------IRYVLCMEASGSMDLAHNALARATHVFVKRLP-EIHLFAARFKEQNGDIDGA 292 (1017)
Q Consensus 221 ~~a~~lyeraL~~~p~~~~lW-------~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~-~i~l~~a~~ee~~g~~~~A 292 (1017)
++|+..|++++..++.+++.. +..+..+...+++++|+..|++++... +..| .....++.++...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~-~~~P~~a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG-QIIPPWAQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHhcCCcHHH
Confidence 557777888887655444332 222233456789999999999998754 2222 2333358889999999999
Q ss_pred HHHHHHHhhhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCcc--------C-cHHHHHHHHHHHHH
Q 001755 293 RAAYQLVHTETSPGL----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS--------Q-TLPMLYAQYSRFLH 359 (1017)
Q Consensus 293 r~iy~~~~~~l~P~~----~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~--------~-~~~~l~~~~a~~l~ 359 (1017)
+.+|++++. ..|.. ...+..++.++...|++++|+.+|++++...|..... . ....++..++.++.
T Consensus 292 ~~~l~~~l~-~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 292 QSILTELFY-HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHhh-cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999764 46654 4567777778889999999999999999886632100 0 01234455677766
Q ss_pred HhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHH
Q 001755 360 LVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL 439 (1017)
Q Consensus 360 ~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe 439 (1017)
. .|++++|+++|++++...|.+..+|..++.+....+.. +.+.+++++++...|++.. +........
T Consensus 371 ~-~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~---~~A~~~l~~al~l~Pd~~~---------l~~~~a~~a 437 (765)
T PRK10049 371 Y-SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP---RAAENELKKAEVLEPRNIN---------LEVEQAWTA 437 (765)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCCChH---------HHHHHHHHH
Confidence 6 99999999999999999999999999999999998877 8899999999999998743 455555677
Q ss_pred HhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 440 GLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 440 ~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
...|+.+.+.+++++.++..|+..
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCH
Confidence 888999999999999999999875
No 43
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.1e-13 Score=142.96 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=77.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 879 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 879 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
.+-++|||+-|+++++|..|+..|+.||+|+.|.+ |+++.||+++|||||+|++..+++.|.+. .|+.|+|+.|.|+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ikrirl-V~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRL-VRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEE-eeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46799999999999999999999999999999974 88999999999999999999999999987 79999999999988
Q ss_pred ccCCC
Q 001755 958 RRPNT 962 (1017)
Q Consensus 958 ~r~~~ 962 (1017)
-+.+.
T Consensus 178 ERgRT 182 (335)
T KOG0113|consen 178 ERGRT 182 (335)
T ss_pred ccccc
Confidence 77554
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.3e-11 Score=134.17 Aligned_cols=212 Identities=12% Similarity=0.051 Sum_probs=183.5
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
+++.....++.++..+.+..+.++-.+.|..|...+|.++++++..+++..-.+++++|..=|++|+++. |.+.-.+++
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQ 433 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQ 433 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHH
Confidence 4555556788888888888899999999999999999999999999999999999999999999999965 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHH
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 358 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l 358 (1017)
++-.+.+++.++++...|+.+.. ..|+.++++.-++.++..+++++.|.+.|++|+++.+.......-...++.-|.++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 99999999999999999999764 58999999999999999999999999999999999987432222233444444444
Q ss_pred HHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhc
Q 001755 359 HLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 415 (1017)
Q Consensus 359 ~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~ 415 (1017)
.+-.+++..|.+++++|++.+|.+--.+..++.||.+.+. ++++..+||+++..
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~l 566 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQL 566 (606)
T ss_pred hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHH
Confidence 4446999999999999999999999999999999999865 48899999998653
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=5.1e-12 Score=153.08 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=171.6
Q ss_pred CcchHHHHHHHHHHH--HH---cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 001755 200 SVTELENWHNYLDFI--ER---DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS---------GSMDLAHNALARAT 265 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~e--~~---~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~---------g~~e~A~~v~~rAl 265 (1017)
.+.+++.|..|+.-. .. .+++++|+.+|++|+..+|++...|..++.++... +++++|...+++|+
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 456677777776643 21 23567899999999999999999999988766532 34899999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccC
Q 001755 266 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 345 (1017)
Q Consensus 266 ~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~ 345 (1017)
++. |+++.+|..++.++...|++++|..+|++++ +++|++..+|+.++.++...|++++|+..|++++...|...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--- 406 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQAN-LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA--- 406 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh---
Confidence 965 9999999999999999999999999999987 57999999999999999999999999999999999999752
Q ss_pred cHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001755 346 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV-QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 418 (1017)
Q Consensus 346 ~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~-P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~ 418 (1017)
..+..++..++. .|++++|..+++++++.. |+++.++..++.+....|+. +.|+..+++++...|+
T Consensus 407 ---~~~~~~~~~~~~-~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~---~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 407 ---AAGITKLWITYY-HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH---ELARKLTKEISTQEIT 473 (553)
T ss_pred ---hhHHHHHHHHHh-ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH---HHHHHHHHHhhhccch
Confidence 233333334455 899999999999999875 77888888888888887776 7788888887666554
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.50 E-value=8.6e-12 Score=157.27 Aligned_cols=243 Identities=10% Similarity=-0.060 Sum_probs=206.1
Q ss_pred cCCCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCh
Q 001755 196 VKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP 273 (1017)
Q Consensus 196 ~~~l~~~--~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~ 273 (1017)
..+.+|. +...|+.++.++.. ++..+|+..|.+++...|.+. ..+.++..+...|++++|...|++++.. +...
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~ 542 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLH--DMSN 542 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc
Confidence 3445566 78899999998876 788899999999999999743 3555677777899999999999998763 4445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHH
Q 001755 274 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 353 (1017)
Q Consensus 274 ~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~ 353 (1017)
..|+.++.++.+.|++++|..+|++++ .+.|.+..++..++....+.|++++|...|+++++..|+ ...+..
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL-~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~~ 614 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAE-QRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYVA 614 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHHH
Confidence 668889999999999999999999987 468888777776666666779999999999999999885 457788
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH
Q 001755 354 YSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSC 433 (1017)
Q Consensus 354 ~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~ 433 (1017)
++..+.+ .|++++|...|+++++.+|++..++..++.+....+.. +.+..+|++++...|+++. ++.
T Consensus 615 LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~---eeAi~~l~~AL~l~P~~~~---------a~~ 681 (987)
T PRK09782 615 RATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI---AQSREMLERAHKGLPDDPA---------LIR 681 (987)
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCHH---------HHH
Confidence 8888777 99999999999999999999999999999888888766 7899999999999998743 566
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 434 VFLEFLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 434 ~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
.....+...|+.+.+..+++++.++-|+.-
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 666677889999999999999999998753
No 47
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2.3e-13 Score=130.29 Aligned_cols=81 Identities=27% Similarity=0.435 Sum_probs=70.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
-.++||||||+..+++.+|+.+|..||.|.+| +|.. .+.|||||||++..+|+.|+.. +|..|.|..|+||..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsv--WvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSV--WVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeE--EEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 35899999999999999999999999999985 4432 2569999999999999999988 799999999999998
Q ss_pred cCCCCCCC
Q 001755 959 RPNTGSTS 966 (1017)
Q Consensus 959 r~~~~~~~ 966 (1017)
.....++.
T Consensus 83 ~G~~r~~r 90 (195)
T KOG0107|consen 83 TGRPRGSR 90 (195)
T ss_pred cCCccccc
Confidence 87665433
No 48
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.47 E-value=1.4e-11 Score=155.46 Aligned_cols=231 Identities=11% Similarity=0.030 Sum_probs=192.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 001755 207 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 286 (1017)
Q Consensus 207 W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~ 286 (1017)
...++..+...|+++.|+..|++++...+. ...|+.++..+...|++++|..+|++++.+. |....++..++......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 333455556899999999999998777555 5678999999999999999999999999864 66666666666656667
Q ss_pred CCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHH
Q 001755 287 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 366 (1017)
Q Consensus 287 g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e 366 (1017)
|++++|...|++++ +++|+ ..+|..++.++.++|++++|+..|++++...|++ ..++..++.++.. .|+++
T Consensus 590 Gr~~eAl~~~~~AL-~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~-~G~~e 660 (987)
T PRK09782 590 GQPELALNDLTRSL-NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWD-SGDIA 660 (987)
T ss_pred CCHHHHHHHHHHHH-HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-CCCHH
Confidence 99999999999987 56997 9999999999999999999999999999999987 6788889988777 99999
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHH
Q 001755 367 KARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQ 446 (1017)
Q Consensus 367 ~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~ 446 (1017)
+|+.+|+++++.+|++..+|..++......++. +.++..|++++...|++.. +..-+.+.+..-.+.+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~---~eA~~~l~~Al~l~P~~a~---------i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDM---AATQHYARLVIDDIDNQAL---------ITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCCCch---------hhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999998877 8899999999999888643 3444555555555556
Q ss_pred HHHHHHHHHHHhcC
Q 001755 447 LIKKAEDRHARLFL 460 (1017)
Q Consensus 447 ~~~~~~~r~~~~~~ 460 (1017)
.+.+.+.|.-..-+
T Consensus 729 ~a~~~~~r~~~~~~ 742 (987)
T PRK09782 729 RLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHhhcCc
Confidence 66666666555544
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.3e-10 Score=127.63 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHH-------------------------------HHcC
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI-------------------------------ERDG 218 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e-------------------------------~~~g 218 (1017)
.+.-...++...+..||+-.+..++.+. +++++.+.+=.. .-.+
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~-----dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLD-----DMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRS 344 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcch-----hHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHH
Confidence 3444667778888889988776444443 233333322111 1112
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 219 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 298 (1017)
Q Consensus 219 ~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~ 298 (1017)
++++|+..|+|||+.+|.+..+|.-.+.=+.+.++...|...|+||++++ |.+-..|+-+++.++-++...=|.-.|++
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 45566666666666666666666666665555666666666666666643 66666666666666666666666666666
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 001755 299 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 377 (1017)
Q Consensus 299 ~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~ 377 (1017)
++ .+.|++..+|..+++++.++++.++|+.+|.+++.....+ ...+..+|.+..+ .++.++|...|++.++
T Consensus 424 A~-~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte------~~~l~~LakLye~-l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 424 AL-ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE------GSALVRLAKLYEE-LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HH-hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc------hHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 54 3566666666666666666666666666666666554332 3355555665333 6666666666655553
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.46 E-value=7.2e-11 Score=148.41 Aligned_cols=202 Identities=12% Similarity=0.043 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC----hHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIAC---ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL----PEIHL 277 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~---p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~----~~i~l 277 (1017)
..+...+-.+...|++++|+..|++++... |.+...|+ +..+...|++++|+.+|++++... |.. ...+.
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~ 314 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHH
Confidence 344443444456799999999999999885 66666774 778888999999999999998743 443 34566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCC-------------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 001755 278 FAARFKEQNGDIDGARAAYQLVHTETSP-------------G--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE 342 (1017)
Q Consensus 278 ~~a~~ee~~g~~~~Ar~iy~~~~~~l~P-------------~--~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~ 342 (1017)
.++..+...|++++|+.+|+++.. ..| + ...+++.++.++...|++++|+++|++++...|++
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~-~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n- 392 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTIN-NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN- 392 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhh-cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence 677777889999999999999764 355 2 34677889999999999999999999999999987
Q ss_pred ccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001755 343 HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 420 (1017)
Q Consensus 343 ~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~ 420 (1017)
..++..+|.++.. .|++++|.++|+++++.+|++..++...+......++. +.|+.++++++...|+++
T Consensus 393 -----~~l~~~lA~l~~~-~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~---~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 393 -----QGLRIDYASVLQA-RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW---RQMDVLTDDVVAREPQDP 461 (765)
T ss_pred -----HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCCCH
Confidence 6788999998776 99999999999999999999999999999988887665 889999999999999985
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=7.3e-13 Score=146.71 Aligned_cols=236 Identities=15% Similarity=0.140 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIAC--ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 283 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~--p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e 283 (1017)
....++..+...|+++.|..++++.+... |++.++|..++.+....++++.|+.+|++++.. .+..+.....++.+
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DKANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-
Confidence 44567888889999999999998776554 899999999999999999999999999999985 46778888888888
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhC
Q 001755 284 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 363 (1017)
Q Consensus 284 e~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g 363 (1017)
...+++++|.+++++.+.. . .+...|..++.++.+.++++++..+++++........ .+.+|..+|.++.+ .|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~a~~~~~-~G 160 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER-D-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD----SARFWLALAEIYEQ-LG 160 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-----HHHHHHHHHHHHH-CC
T ss_pred ccccccccccccccccccc-c-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHH-cC
Confidence 6889999999999987743 3 4577788888999999999999999999886442221 16788999999777 99
Q ss_pred CHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001755 364 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 443 (1017)
Q Consensus 364 ~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~G 443 (1017)
+.++|+++|+++|+.+|++..++..++.+....+.. +.++.+++......++++. +|..+.......|
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~---~~~~~~l~~~~~~~~~~~~---------~~~~la~~~~~lg 228 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY---DEAREALKRLLKAAPDDPD---------LWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH---HHHHHHHHHHHHH-HTSCC---------HCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHCcCHHH---------HHHHHHHHhcccc
Confidence 999999999999999999999999999998877655 5577777777776666653 7788888888899
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q 001755 444 DAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 444 d~~~~~~~~~r~~~~~~~~ 462 (1017)
+.+.+...++++.+..|..
T Consensus 229 ~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT-
T ss_pred ccccccccccccccccccc
Confidence 9999999999999988764
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=6.5e-11 Score=125.57 Aligned_cols=204 Identities=14% Similarity=0.134 Sum_probs=171.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 001755 237 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 316 (1017)
Q Consensus 237 ~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~ 316 (1017)
....|+.++..+...|++++|...|++++... |.+...|..++.++...|++++|++.|++++ .+.|.+..++..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRAL-TLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHH
Confidence 36788999999999999999999999999865 8889999999999999999999999999987 468999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhC
Q 001755 317 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 396 (1017)
Q Consensus 317 ~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~ 396 (1017)
++...|++++|+..|++++....... ...++..++..+.. .|++++|...|+++++.+|.+...|..++.+....
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQ----PARSLENAGLCALK-AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccccc----chHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 99999999999999999998543211 14566677777666 99999999999999999999999999999988887
Q ss_pred CChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 001755 397 SSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 459 (1017)
Q Consensus 397 ~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~ 459 (1017)
++. +.+..++++++...++++ ..+..........|+.+.+..+.+...+.+
T Consensus 183 ~~~---~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 183 GQY---KDARAYLERYQQTYNQTA---------ESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CCH---HHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 766 778889999887744432 133355667778899999988887776654
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=8e-11 Score=131.18 Aligned_cols=204 Identities=9% Similarity=-0.060 Sum_probs=160.1
Q ss_pred CCCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHH
Q 001755 198 PLSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 276 (1017)
Q Consensus 198 ~l~~~~-l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~ 276 (1017)
++++.+ ...|...+..+...|+.+.|+..|++++...|+++..|+.++.++...|+++.|...|++++++. |++..+|
T Consensus 57 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~ 135 (296)
T PRK11189 57 DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAY 135 (296)
T ss_pred cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 344444 68899999999999999999999999999999999999999999999999999999999999965 9999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHH
Q 001755 277 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 356 (1017)
Q Consensus 277 l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~ 356 (1017)
+.++.++...|++++|.+.|++++ .++|++.. ...|..+....++.++|+..|++++....... +. ++.
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al-~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~-----~~----~~~ 204 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFY-QDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKLDKEQ-----WG----WNI 204 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhCCccc-----cH----HHH
Confidence 999999999999999999999987 46998763 22333345567899999999988775543221 11 121
Q ss_pred HHHHhhCCHHHHHHHHHHHh-------hhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001755 357 FLHLVSRNAEKARQILVDSL-------DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 418 (1017)
Q Consensus 357 ~l~~~~g~~e~Ar~i~~~al-------~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~ 418 (1017)
.... .|+...+ ..++.++ +..|.....|..++.+....++. +.++.+|++++..+|.
T Consensus 205 ~~~~-lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~---~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 205 VEFY-LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL---DEAAALFKLALANNVY 268 (296)
T ss_pred HHHH-ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCc
Confidence 1122 5555433 2333333 45556667899999999988876 8899999999988754
No 54
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.41 E-value=2.6e-12 Score=144.18 Aligned_cols=82 Identities=24% Similarity=0.371 Sum_probs=74.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEE
Q 001755 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 955 (1017)
Q Consensus 877 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~V 955 (1017)
....+++|||+|||+++|+++|+++|+.||.|++|+| +++..+++++|||||+|.+.++|++||+. +++.|.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i-~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRI-MRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3446799999999999999999999999999999986 56888999999999999999999999976 899999999999
Q ss_pred Eecc
Q 001755 956 EERR 959 (1017)
Q Consensus 956 e~~r 959 (1017)
.+++
T Consensus 182 ~~a~ 185 (346)
T TIGR01659 182 SYAR 185 (346)
T ss_pred eccc
Confidence 8664
No 55
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=5.2e-13 Score=120.98 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=72.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
.+++||||||++.++|++|.++|+++|.|+.| |+--|+.+..+.|||||+|-+.++|..||+- +++.|+.+.|+|++.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irri-iMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI-IMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchhee-EeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57999999999999999999999999999997 4445666677899999999999999999998 899999999999986
Q ss_pred cC
Q 001755 959 RP 960 (1017)
Q Consensus 959 r~ 960 (1017)
-.
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 53
No 56
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.40 E-value=2.8e-12 Score=150.97 Aligned_cols=74 Identities=34% Similarity=0.481 Sum_probs=66.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcC--CCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNF--GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
.++|||+||+.++++++|+++|++| |.|++|.+ .++||||+|++.++|.+||+. |+..|+|+.|+|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4789999999999999999999999 99998653 246999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001755 958 RRPNTG 963 (1017)
Q Consensus 958 ~r~~~~ 963 (1017)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 57
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.36 E-value=4.9e-12 Score=144.99 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=76.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 879 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 879 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
..+++|||+|||+++++++|+++|++||.|.+|+| ++++.+|.+||||||+|.+.++|.+||.. ||..|+||.|+|++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i-~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKI-IRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-eEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45689999999999999999999999999999986 56888999999999999999999999987 89999999999999
Q ss_pred ccCCC
Q 001755 958 RRPNT 962 (1017)
Q Consensus 958 ~r~~~ 962 (1017)
+..+.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 87653
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=1.1e-11 Score=142.03 Aligned_cols=208 Identities=15% Similarity=0.117 Sum_probs=152.1
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHH
Q 001755 198 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 277 (1017)
Q Consensus 198 ~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l 277 (1017)
..+|...+.|...+.++.-+++++.|++.|+||++.+|.....+..++.=+.....+|.|...|+.|+.+. |++-.+|+
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwY 493 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWY 493 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHH
Confidence 34666667888888888777888888888888888888777666666655555667888888888888744 77778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHH
Q 001755 278 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 357 (1017)
Q Consensus 278 ~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~ 357 (1017)
-++.++.++++++.|.-.|++++ +++|.+.-+..-.+.++.+.|..|+|+.+|++|+...+.+ +.....-+.+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~-~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~i 566 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAV-EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASI 566 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhh-cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHH
Confidence 88888888888888888888876 4688888888888888888888888888888888887765 3334455666
Q ss_pred HHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCC
Q 001755 358 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 417 (1017)
Q Consensus 358 l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~ 417 (1017)
++. .+++++|...|+++-+..|+...++..+...-...+.. +.+..-|--|+...|
T Consensus 567 l~~-~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~---~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 567 LFS-LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT---DLALLHFSWALDLDP 622 (638)
T ss_pred HHh-hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc---hHHHHhhHHHhcCCC
Confidence 555 78888888888888888888777777777776666554 334444444444433
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=8.9e-11 Score=134.83 Aligned_cols=218 Identities=14% Similarity=0.077 Sum_probs=186.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001755 223 VVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 302 (1017)
Q Consensus 223 a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~ 302 (1017)
.-.|-+..+..+|+.++-|-.++.|+.-+++.+.|.+.|+||+++. |+....|-.++.=...+.++|.|...|+.++ .
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al-~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL-G 483 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh-c
Confidence 3345566677789999999999999999999999999999999965 8888999999988888999999999999987 4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCC
Q 001755 303 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 382 (1017)
Q Consensus 303 l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~ 382 (1017)
++|.+..+|+.++..+.++++++.|.-.|++|+++.|.+ ..++..++.++.+ .|+.|+|..+|++|+..+|.+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~-~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQ-LKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHH-hhhhhHHHHHHHHHHhcCCCC
Confidence 799999999999999999999999999999999999987 4577778888777 999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 001755 383 KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 461 (1017)
Q Consensus 383 ~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~ 461 (1017)
+.--...+.+....+.. +++...+|..-...|++.. +......-...+|..+.+.+.+--+..+-|.
T Consensus 557 ~l~~~~~~~il~~~~~~---~eal~~LEeLk~~vP~es~---------v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRY---VEALQELEELKELVPQESS---------VFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred chhHHHHHHHHHhhcch---HHHHHHHHHHHHhCcchHH---------HHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 98666666666666555 6788888888777787643 4555667778889888888888877777664
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.2e-10 Score=128.47 Aligned_cols=232 Identities=13% Similarity=0.084 Sum_probs=197.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCC
Q 001755 209 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 288 (1017)
Q Consensus 209 ~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~ 288 (1017)
--+.|..-.|+...+...|..++..+|....+++..+..+...++.++--..|.+|..+. |.+++++...+.+..-+++
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH
Confidence 334555667899999999999999999999999999999999999999999999999965 9999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHH
Q 001755 289 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKA 368 (1017)
Q Consensus 289 ~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~A 368 (1017)
+++|.+-|+++. .++|++.-.+++++-++.|++.++++...|+.++..+|.. ++.+.-+|..|.. ++++++|
T Consensus 410 ~e~A~aDF~Kai-~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~fAeiLtD-qqqFd~A 481 (606)
T KOG0547|consen 410 YEEAIADFQKAI-SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PEVYNLFAEILTD-QQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHh-hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHhh-HHhHHHH
Confidence 999999999975 6899999999999999999999999999999999999986 6788888999887 9999999
Q ss_pred HHHHHHHhhhcCC------CHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 001755 369 RQILVDSLDHVQL------SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLF 442 (1017)
Q Consensus 369 r~i~~~al~~~P~------~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~ 442 (1017)
.+.|.+++++-|. +...+..-+.+... -..++..+..|+.+|++..|.... -..-+..|+...
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q--wk~d~~~a~~Ll~KA~e~Dpkce~---------A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ--WKEDINQAENLLRKAIELDPKCEQ---------AYETLAQFELQR 550 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhc--hhhhHHHHHHHHHHHHccCchHHH---------HHHHHHHHHHHH
Confidence 9999999999998 55433322222222 135789999999999998776421 233456788899
Q ss_pred CCHHHHHHHHHHHHHhcC
Q 001755 443 GDAQLIKKAEDRHARLFL 460 (1017)
Q Consensus 443 Gd~~~~~~~~~r~~~~~~ 460 (1017)
|+++.+..++++...+-.
T Consensus 551 ~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 551 GKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999999988877654
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1e-10 Score=128.43 Aligned_cols=196 Identities=13% Similarity=0.098 Sum_probs=160.7
Q ss_pred HHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 001755 178 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLA 257 (1017)
Q Consensus 178 ~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A 257 (1017)
+-+-+...|++|.- +.....|+|..+.+|.-.+-=+.+..+...|+..|.||+..||.+...|+-+++.++-.+-..=|
T Consensus 339 YYSlr~eHEKAv~Y-FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMY-FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHHhHHHHHHH-HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 34446678888852 22356699999999998886556677888999999999999999999999999999999989999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 258 HNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 337 (1017)
Q Consensus 258 ~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~ 337 (1017)
+-.|+||+. +.|+++.+|..++.++++.+++++|+++|.+++. +.-..-.++.++++++.++++.++|...|++.++.
T Consensus 418 LyYfqkA~~-~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 418 LYYFQKALE-LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHh-cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999998 5599999999999999999999999999999874 45445789999999999999999999999999985
Q ss_pred hc--CCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhh
Q 001755 338 EK--GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 378 (1017)
Q Consensus 338 ~~--~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~ 378 (1017)
.- +.. ........+.+|.++.+ .+++++|-.....++.-
T Consensus 496 ~~~eg~~-~~~t~ka~~fLA~~f~k-~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 496 SELEGEI-DDETIKARLFLAEYFKK-MKDFDEASYYATLVLKG 536 (559)
T ss_pred HHhhccc-chHHHHHHHHHHHHHHh-hcchHHHHHHHHHHhcC
Confidence 52 111 11123344557888777 99999998877777654
No 62
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.33 E-value=5.6e-12 Score=123.51 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=73.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
-.+|-|-||.+.++.++|+.+|++||.|-+|.| -+|+.|+.++|||||-|.+..+|+.|+++ .|.+|+|+.|+|..++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyI-Prdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYI-PRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceec-ccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 378999999999999999999999999999865 57899999999999999999999999998 6999999999999886
Q ss_pred C
Q 001755 960 P 960 (1017)
Q Consensus 960 ~ 960 (1017)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 63
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=3e-12 Score=128.78 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=72.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEe
Q 001755 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 957 (1017)
Q Consensus 878 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~ 957 (1017)
|..-++||||||++.++.+.|++.|++||+|.+..| +.|+.+|++||||||+|.|.++|.+|++.....|+||+..+..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavv-itd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVV-ITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEE-EeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 445689999999999999999999999999999854 7799999999999999999999999999877889999988765
Q ss_pred c
Q 001755 958 R 958 (1017)
Q Consensus 958 ~ 958 (1017)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 4
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.8e-11 Score=123.49 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=76.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
+..+|-|.||+.++++++|+++|.+||.|..|.+ .+|+.||.+||||||.|.+.++|.+||.. ||+-++.-.|+||++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyl-ardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYL-ARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEE-EEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 5689999999999999999999999999999864 78999999999999999999999999988 899999999999999
Q ss_pred cCC
Q 001755 959 RPN 961 (1017)
Q Consensus 959 r~~ 961 (1017)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 985
No 65
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.30 E-value=2.6e-11 Score=133.62 Aligned_cols=135 Identities=19% Similarity=0.244 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 284 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~-~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee 284 (1017)
+|..|+.|+.+.+..+.++.+|++|+.......++|+.+|.++.. .++.+.|+.||+++++.+ +.+..+|+.|+.++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 799999999999999999999999997777778999999999888 567777999999999977 999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 285 QNGDIDGARAAYQLVHTETSPGL--LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 285 ~~g~~~~Ar~iy~~~~~~l~P~~--~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
..|+.+.||.+|++++..+.+.. ..+|.+|+++|.+.|+++.++++++|+.+..+..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999986544332 4699999999999999999999999999998874
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=2.8e-10 Score=126.83 Aligned_cols=225 Identities=13% Similarity=0.097 Sum_probs=163.9
Q ss_pred ChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHH
Q 001755 219 DFNKVVKLYERCLIACA----NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 294 (1017)
Q Consensus 219 ~~~~a~~lyeraL~~~p----~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~ 294 (1017)
..+-++.-+.++|...+ ....+|+..+..+...|+.+.|+..|++++++. |+++.+|..++.++...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666777775443 446789999999999999999999999999965 9999999999999999999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001755 295 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 374 (1017)
Q Consensus 295 iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~ 374 (1017)
.|++++ +++|++..+|..++.++...|++++|...|+++++..|++ +. ...|..+ ....++.++|...|++
T Consensus 120 ~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~------~~-~~~~~~l-~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 120 AFDSVL-ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND------PY-RALWLYL-AESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HH-HHHHHHH-HHccCCHHHHHHHHHH
Confidence 999987 5799999999999999999999999999999999998875 21 1122222 2337899999999988
Q ss_pred HhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001755 375 SLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDR 454 (1017)
Q Consensus 375 al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r 454 (1017)
++...+.....| .++.+. .+.... + ..++.++.....+.. + .....+.|..........|+.+++..++++
T Consensus 191 ~~~~~~~~~~~~-~~~~~~--lg~~~~-~---~~~~~~~~~~~~~~~-l-~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 191 RYEKLDKEQWGW-NIVEFY--LGKISE-E---TLMERLKAGATDNTE-L-AERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHhhCCccccHH-HHHHHH--ccCCCH-H---HHHHHHHhcCCCcHH-H-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 876543322222 233333 332211 1 233444333222211 0 111223455556678889999999999999
Q ss_pred HHHhcCCC
Q 001755 455 HARLFLPH 462 (1017)
Q Consensus 455 ~~~~~~~~ 462 (1017)
+.+.-+..
T Consensus 262 Al~~~~~~ 269 (296)
T PRK11189 262 ALANNVYN 269 (296)
T ss_pred HHHhCCch
Confidence 99888653
No 67
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.27 E-value=1.8e-11 Score=104.76 Aligned_cols=69 Identities=35% Similarity=0.566 Sum_probs=62.9
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEE
Q 001755 884 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 954 (1017)
Q Consensus 884 l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~ 954 (1017)
|||+|||.++++++|+++|++||.|..+.+.. + .+++.+|||||+|.+.++|++|++. +|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~-~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR-N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE-E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc-c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999877543 3 5678899999999999999999996 89999999885
No 68
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.27 E-value=2.1e-08 Score=127.79 Aligned_cols=265 Identities=12% Similarity=0.076 Sum_probs=200.2
Q ss_pred HHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---cCCCHHHHHHHHHH
Q 001755 171 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA---CANYPEYWIRYVLC 247 (1017)
Q Consensus 171 ~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~---~p~~~~lW~~ya~~ 247 (1017)
.|-+.....+.+..|++.... .+. .+...|..++..+.+.|++++|..+|++.... ..-+...|..++..
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~------Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSK------NVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHc------CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 444555555555556665532 112 23568999999999999999999999998763 22346788888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCCcHHHHHHHHHHHHHcCCHHH
Q 001755 248 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGNLED 326 (1017)
Q Consensus 248 l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~-l~P~~~~~~~~~a~~e~r~g~~e~ 326 (1017)
+.+.|++++|+.+|+++.+...+.+...|..+...+.+.|++++|.++|+.+... +.|+ ...|..++..+.+.|++++
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999988665667888999999999999999999999987532 3565 6788889999999999999
Q ss_pred HHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhh-cCCCHHHHHHHHHHHhhCCChhHHHHH
Q 001755 327 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-VQLSKPLLEALIHFESIQSSPKQIDFL 405 (1017)
Q Consensus 327 A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~-~P~~~~lw~~~a~~E~~~~~~~~~~~a 405 (1017)
|..+|++.++...... ...+..++..+.+ .|++++|.++|+++.+. ...+...|..++......+.. +.|
T Consensus 668 A~~l~~eM~k~G~~pd-----~~tynsLI~ay~k-~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~---eeA 738 (1060)
T PLN03218 668 AFEILQDARKQGIKLG-----TVSYSSLMGACSN-AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL---PKA 738 (1060)
T ss_pred HHHHHHHHHHcCCCCC-----HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH---HHH
Confidence 9999999887543221 4566677777677 99999999999998753 233467899999988887766 778
Q ss_pred HHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Q 001755 406 EQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 460 (1017)
Q Consensus 406 r~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~ 460 (1017)
.++|++..... -.|. ...+...+.-....|+.+.+.+++.+.++.-.
T Consensus 739 lelf~eM~~~G-i~Pd-------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 739 LEVLSEMKRLG-LCPN-------TITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHHHHHcC-CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 88888865431 1111 12456667777888999999999999887643
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.4e-11 Score=127.25 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=70.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
..++|+|+|||+...+-||+.+|.+||+|.+|+|+.-++ -+||||||+|++.+++++|-+. +|..+.||+|.|..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER---GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER---GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC---CCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 348999999999999999999999999999999865444 2799999999999999999988 799999999999876
Q ss_pred cC
Q 001755 959 RP 960 (1017)
Q Consensus 959 r~ 960 (1017)
..
T Consensus 172 Ta 173 (376)
T KOG0125|consen 172 TA 173 (376)
T ss_pred ch
Confidence 54
No 70
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.26 E-value=2.4e-08 Score=127.26 Aligned_cols=264 Identities=15% Similarity=0.118 Sum_probs=204.9
Q ss_pred HHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 001755 171 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-ANYPEYWIRYVLCME 249 (1017)
Q Consensus 171 ~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~-p~~~~lW~~ya~~l~ 249 (1017)
.|-+.......+..|++..+.- . ..+...|..+++.+.+.|++++|..+|++..... .-+...|..++..+.
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~G------v-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAG------V-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcC------C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4555555555666677766421 1 1246799999999999999999999999987653 334789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhh--cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 001755 250 ASGSMDLAHNALARATHVF--VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 327 (1017)
Q Consensus 250 ~~g~~e~A~~v~~rAl~~~--~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A 327 (1017)
+.|++++|..+|++..... ...+...|..+...+.+.|++++|+++|+.+...-.+.+...|..++..+.+.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999987531 12345678888889999999999999999976432344578999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHhhCCChhHHHHHH
Q 001755 328 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV-QLSKPLLEALIHFESIQSSPKQIDFLE 406 (1017)
Q Consensus 328 ~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~-P~~~~lw~~~a~~E~~~~~~~~~~~ar 406 (1017)
..+|++.....-... ...|..++..+.+ .|++++|.++|+.+++.. ..+...|..++......+.. +.+.
T Consensus 634 l~lf~eM~~~Gv~PD-----~~TynsLI~a~~k-~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~---eeA~ 704 (1060)
T PLN03218 634 LSIYDDMKKKGVKPD-----EVFFSALVDVAGH-AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW---KKAL 704 (1060)
T ss_pred HHHHHHHHHcCCCCC-----HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH---HHHH
Confidence 999999887532211 3455666666666 999999999999999853 45677999999998888766 7889
Q ss_pred HHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 001755 407 QLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 458 (1017)
Q Consensus 407 ~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~ 458 (1017)
.+|++..... -.+. ...|...+....+.|+.+++.+++++..+.
T Consensus 705 ~lf~eM~~~g-~~Pd-------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 705 ELYEDIKSIK-LRPT-------VSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHcC-CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9998876431 1111 236888899999999999999999987654
No 71
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=3e-09 Score=109.28 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=169.6
Q ss_pred CChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHH
Q 001755 218 GDFNKVVKLYERCLIACAN---YPEYWIRYVLCME---ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 291 (1017)
Q Consensus 218 g~~~~a~~lyeraL~~~p~---~~~lW~~ya~~l~---~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~ 291 (1017)
-+.+.++++++..+...+. -.+.|.-|=+... ..++.+.|..++++....+ |++..+-.+.|.+++..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3566777777777766543 3677877655443 4689999999999988888 9999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001755 292 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 371 (1017)
Q Consensus 292 Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i 371 (1017)
|.++|++++.+ +|.+..++.+...+...+|.--+|++-+...++.+..+ ...|..++.+... .|++++|.-+
T Consensus 105 A~e~y~~lL~d-dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~-~~~f~kA~fC 176 (289)
T KOG3060|consen 105 AIEYYESLLED-DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELAEIYLS-EGDFEKAAFC 176 (289)
T ss_pred HHHHHHHHhcc-CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHh-HhHHHHHHHH
Confidence 99999998865 89999999999999999999999999999999999987 7899999999666 9999999999
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001755 372 LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 372 ~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~ 419 (1017)
|+..+-..|.++.++..|+++...++..++++-+|++|+++++..+.+
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 999999999999999999999988888888999999999999987654
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.25 E-value=3.8e-09 Score=124.96 Aligned_cols=248 Identities=12% Similarity=0.099 Sum_probs=175.6
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChH----
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---- 274 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~---- 274 (1017)
|+|.+.+.|..+.++-.+.|++++|+.+|.|||...|.+-++..+++.++.+.|+...|...|.+++...+|.+.+
T Consensus 202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 5677778888888888888888888888888888888888888888888888888888888888888855322111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------------------------------
Q 001755 275 IHLFAARFKEQNGDIDGARAAYQLV------------------------------------------------------- 299 (1017)
Q Consensus 275 i~l~~a~~ee~~g~~~~Ar~iy~~~------------------------------------------------------- 299 (1017)
.-...++.+..+++.+.|.++++.+
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 1111234444444445555544410
Q ss_pred ------------------------------------------hhh-c-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001755 300 ------------------------------------------HTE-T-SPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 335 (1017)
Q Consensus 300 ------------------------------------------~~~-l-~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al 335 (1017)
... + .-...++++..+.++.+.|++..|..+|..++
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred ccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 000 0 01234467778888999999999999999999
Q ss_pred HhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhc
Q 001755 336 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 415 (1017)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~ 415 (1017)
...+.+. ..+|...|+++.. +|.++.|...|+++|...|++.++-..++.+...+|+. +++...++.....
T Consensus 442 ~~~~~~~-----~~vw~~~a~c~~~-l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~---EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 442 NREGYQN-----AFVWYKLARCYME-LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNH---EKALETLEQIINP 512 (895)
T ss_pred cCccccc-----hhhhHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH---HHHHHHHhcccCC
Confidence 8877653 5689999999766 99999999999999999999999999999999999988 6667666665533
Q ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 001755 416 NSDSP--STANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 457 (1017)
Q Consensus 416 ~~~~~--~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~ 457 (1017)
.+++. ....++.| |...+...+...|+.+.....--.+..
T Consensus 513 D~~~~e~~a~~~e~r--i~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 513 DGRNAEACAWEPERR--ILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred CccchhhccccHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32222 22344444 445556666666776664444444333
No 73
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.23 E-value=2.8e-11 Score=138.69 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=74.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
..+|||+|||.++++++|+++|++||+|.+|+| ++++.+|+++|||||+|.+.++|.+||+. +|..|.|+.|+|++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i-~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKL-VRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEE-EEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 479999999999999999999999999999986 66888899999999999999999999986 8999999999999887
Q ss_pred CCC
Q 001755 960 PNT 962 (1017)
Q Consensus 960 ~~~ 962 (1017)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 544
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.4e-12 Score=125.24 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=73.9
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEE
Q 001755 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 955 (1017)
Q Consensus 877 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~V 955 (1017)
.-.++..|||||||++.|+.+|-.+|++||+|++|. ++||+.||+++||||+.|++..+-.-|+.. ||+.|.||.|+|
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin-LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN-LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEE-EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 345678999999999999999999999999999986 589999999999999999999999889887 899999999999
Q ss_pred Ee
Q 001755 956 EE 957 (1017)
Q Consensus 956 e~ 957 (1017)
+-
T Consensus 110 DH 111 (219)
T KOG0126|consen 110 DH 111 (219)
T ss_pred ee
Confidence 74
No 75
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.22 E-value=5.5e-09 Score=122.05 Aligned_cols=235 Identities=12% Similarity=0.030 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYP-EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 284 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~-~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee 284 (1017)
.+.-.+....+.|+++++...|++++...|.+. .+...++.++...|+++.|+..++++++.. |+++.++..++.++.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~ 198 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYI 198 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 333444444555555555555555555555543 344445555555555555555555555543 555555555555555
Q ss_pred HcCCHHHHHHHHHHH--------------------------------------hhhcCC----CcHHHHHHHHHHHHHcC
Q 001755 285 QNGDIDGARAAYQLV--------------------------------------HTETSP----GLLEAIIKHANMERRLG 322 (1017)
Q Consensus 285 ~~g~~~~Ar~iy~~~--------------------------------------~~~l~P----~~~~~~~~~a~~e~r~g 322 (1017)
..|++++|.+.+.++ .. ..| ++..++..++.++...|
T Consensus 199 ~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~-~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 199 RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK-NQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HCCHHHhCCHHHHHHHHHHHHHCC
Confidence 555555555444432 21 134 46778888888888889
Q ss_pred CHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCH--HHHHHHHHHHhhCCChh
Q 001755 323 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK--PLLEALIHFESIQSSPK 400 (1017)
Q Consensus 323 ~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~--~lw~~~a~~E~~~~~~~ 400 (1017)
++++|..+++++++..+++.... ..++..+..+ ..++.+++++.++++++.+|+++ .+...+..+....++.
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~l---~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~- 351 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPRL---KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF- 351 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccch--hHHHHHhhhc---CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH-
Confidence 99999999999998887753100 0122222222 25778888999999999999988 7888888888777665
Q ss_pred HHHHHHHHHH--HHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Q 001755 401 QIDFLEQLVD--KFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 460 (1017)
Q Consensus 401 ~~~~ar~l~e--~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~ 460 (1017)
+.+++.|+ .++...|++. ....+.+.++..|+.+.+.+++++.+...-
T Consensus 352 --~~A~~~le~a~a~~~~p~~~----------~~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 352 --IEAADAFKNVAACKEQLDAN----------DLAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred --HHHHHHHHHhHHhhcCCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 77888888 4666655531 344778888999999999999998876653
No 76
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.22 E-value=1.1e-08 Score=111.96 Aligned_cols=377 Identities=12% Similarity=0.097 Sum_probs=245.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHcccHHHHHHHHHHHHhc-chhhHHHHHHHHHHHhccCCCcccCCHH
Q 001755 34 LLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQQLDRYFSSFKEFAASRPLSELRTAE 112 (1017)
Q Consensus 34 ~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy~R~l~~-P~~~~~~~~~~f~~~~~~~~~~~~~~~~ 112 (1017)
..++|.+||..+.-.+. =...|.+|+.=|...+++..|..||.|+|+- -..++|..|-.|-.-+++. ++-
T Consensus 58 ~~~~re~yeq~~~pfp~---~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~YIRr~n~~-----~tG- 128 (660)
T COG5107 58 MDAEREMYEQLSSPFPI---MEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEYIRRVNNL-----ITG- 128 (660)
T ss_pred HHHHHHHHHHhcCCCcc---ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHHHHhhCcc-----ccc-
Confidence 56699999999988887 6889999999999999999999999995554 3347777777777766541 111
Q ss_pred HHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccC
Q 001755 113 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 192 (1017)
Q Consensus 113 e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~~~~~~~~fE~~I~r~ 192 (1017)
+......++|+..+..+. ++-...+- + .+.-...+++... ..+...+.+..-|.-|-++|..|
T Consensus 129 q~r~~i~~ayefv~~~~~----~e~~s~~~-W-----------~ey~~fle~~~~~-~kwEeQqrid~iR~~Y~ral~tP 191 (660)
T COG5107 129 QKRFKIYEAYEFVLGCAI----FEPQSENY-W-----------DEYGLFLEYIEEL-GKWEEQQRIDKIRNGYMRALQTP 191 (660)
T ss_pred chhhhhHHHHHHHHhccc----ccccccch-H-----------HHHHHHHHhcccc-ccHHHHHHHHHHHHHHHHHHcCc
Confidence 100122234444443222 00000000 0 0110111111110 12234444555567788888776
Q ss_pred CcccCCCCcchHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHhc------------------CCCHHHH
Q 001755 193 YFHVKPLSVTELENWHNYLDFIERDGD-------------FNKVVKLYERCLIAC------------------ANYPEYW 241 (1017)
Q Consensus 193 y~~~~~l~~~~l~~W~~yl~~e~~~g~-------------~~~a~~lyeraL~~~------------------p~~~~lW 241 (1017)
..... ++|..|-.||.+.+. +-.|+..|+..+-.. .....-|
T Consensus 192 ~~nle-------klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 192 MGNLE-------KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred cccHH-------HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 65543 799999999965432 345666666554332 1223459
Q ss_pred HHHHHHHHHcC-----C--HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 001755 242 IRYVLCMEASG-----S--MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 314 (1017)
Q Consensus 242 ~~ya~~l~~~g-----~--~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~ 314 (1017)
++|+.|....+ + ....--+|++++.. .+-++++|+.+..+....++-+.|...-++... ..| .+.+.+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~-~sp---sL~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE-MSP---SLTMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc-CCC---chheeH
Confidence 99999998753 2 33455668899974 489999999999999999999999988888642 344 478888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCC-------Cc------cCcHHHHH-----------HHHHHHHHHhhCCHHHHHH
Q 001755 315 ANMERRLGNLEDAFSLYEQAIAIEKGK-------EH------SQTLPMLY-----------AQYSRFLHLVSRNAEKARQ 370 (1017)
Q Consensus 315 a~~e~r~g~~e~A~~iye~al~~~~~~-------~~------~~~~~~l~-----------~~~a~~l~~~~g~~e~Ar~ 370 (1017)
+..+.-..+-++...+|+++++..... .. .....+++ ..+.....+ ...++.||+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r-~~Gl~aaR~ 418 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLR-KRGLEAARK 418 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHH-HhhHHHHHH
Confidence 888888888888888888887644310 00 00112222 223344444 678999999
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHH
Q 001755 371 ILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKK 450 (1017)
Q Consensus 371 i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~ 450 (1017)
+|-++-+..=...++|+.-+.+|.....+ ...+-.+|+..+..++|++. .-..|+.|+-..+|...++.
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~~~d--~~ta~~ifelGl~~f~d~~~---------y~~kyl~fLi~inde~nara 487 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYATGD--RATAYNIFELGLLKFPDSTL---------YKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHhcCC--cchHHHHHHHHHHhCCCchH---------HHHHHHHHHHHhCcHHHHHH
Confidence 99999765535556665555555443222 14578899999999999852 56789999999999999999
Q ss_pred HHHHHHHhcC
Q 001755 451 AEDRHARLFL 460 (1017)
Q Consensus 451 ~~~r~~~~~~ 460 (1017)
+++.....+.
T Consensus 488 LFetsv~r~~ 497 (660)
T COG5107 488 LFETSVERLE 497 (660)
T ss_pred HHHHhHHHHH
Confidence 9986665543
No 77
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.22 E-value=5.2e-09 Score=130.97 Aligned_cols=258 Identities=12% Similarity=0.065 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-ANYPEYWIRYVLCM 248 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~-p~~~~lW~~ya~~l 248 (1017)
..|.+.......+..|++... .+...|..++..+.+.|+.++|..+|++..... .-+...+..++..+
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~-----------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPE-----------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC-----------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666666666665432 345699999999999999999999999987652 33577888889999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001755 249 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 328 (1017)
Q Consensus 249 ~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~ 328 (1017)
.+.|+++.|+.++..+++...+.+..++..+..++.+.|++++|+++|+++. .| +...|..++..+.+.|+.++|.
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~-d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP---RK-NLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC---CC-CeeeHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999987666778889999999999999999999999963 34 4678999999999999999999
Q ss_pred HHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCC--HHHHHHHHHHHhhCCChhHHHHHH
Q 001755 329 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIHFESIQSSPKQIDFLE 406 (1017)
Q Consensus 329 ~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~--~~lw~~~a~~E~~~~~~~~~~~ar 406 (1017)
++|++.+....... ...+..+...+.+ .|++++|+++|+.+.+..+.. ...|..++++....|.. +.|.
T Consensus 412 ~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~-~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~---~eA~ 482 (697)
T PLN03081 412 EMFERMIAEGVAPN-----HVTFLAVLSACRY-SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL---DEAY 482 (697)
T ss_pred HHHHHHHHhCCCCC-----HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH---HHHH
Confidence 99999886533211 3345555555555 999999999999998754333 45788899988887765 7788
Q ss_pred HHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 407 QLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 407 ~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
+++++. +-.+. ..+|...+.-...+|+.+.++.+.++..+.-|+.
T Consensus 483 ~~~~~~----~~~p~-------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 483 AMIRRA----PFKPT-------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHC----CCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 888764 22221 2379999999999999999999999888776653
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.21 E-value=4.8e-11 Score=124.95 Aligned_cols=76 Identities=25% Similarity=0.297 Sum_probs=68.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEeccC
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 960 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~r~ 960 (1017)
.++|||+|||+.+|+++|+++|+.||.|.+|.| ++++. .+|||||+|.+.++++.||..+|..|+|+.|+|..++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I-~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEM-QSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 489999999999999999999999999999876 34442 46899999999999999998899999999999998764
No 79
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.20 E-value=6.9e-09 Score=120.67 Aligned_cols=221 Identities=13% Similarity=0.043 Sum_probs=154.1
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHH
Q 001755 215 ERDGDFNKVVKLYERCLIACANYP-EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 293 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~-~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar 293 (1017)
.+.|+++++...|+++....|++. ...+..+.+....|+++.|..+++++++.. |+++.++..++.++.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555555555554432 222233444444555555555555555433 555555555555555555555555
Q ss_pred HHHHHHh-----------------------------------------hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001755 294 AAYQLVH-----------------------------------------TETSPGLLEAIIKHANMERRLGNLEDAFSLYE 332 (1017)
Q Consensus 294 ~iy~~~~-----------------------------------------~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye 332 (1017)
+++.++. ....|++..++..++..+.+.|+.++|..+++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4333221 11246678888999999999999999999999
Q ss_pred HHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 001755 333 QAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF 412 (1017)
Q Consensus 333 ~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~a 412 (1017)
++++..++ ..+...|+.+ . .++.+++.+.+++.++.+|+++.++..++.+-...+.- +.+++.|+++
T Consensus 288 ~~l~~~~~-------~~l~~l~~~l--~-~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~---~~A~~~le~a 354 (398)
T PRK10747 288 DGLKRQYD-------ERLVLLIPRL--K-TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW---QEASLAFRAA 354 (398)
T ss_pred HHHhcCCC-------HHHHHHHhhc--c-CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHH
Confidence 99995443 4455555555 2 69999999999999999999999999999999988766 8899999999
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 001755 413 LMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 459 (1017)
Q Consensus 413 l~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~ 459 (1017)
+...|++. .+..+...++..|+.+.+..++++.+.+.
T Consensus 355 l~~~P~~~----------~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 355 LKQRPDAY----------DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HhcCCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99887752 34567788899999999999999887765
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.19 E-value=4.9e-11 Score=130.06 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCH--HHHHHHHHh-CCCcccCeEEEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI--SGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~--~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
.+.+||||||++.+++++|+.+|+.||.|++|.|. +.+| ||||||+|.+. .++.+||.. ||..++|+.|+|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp---RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV---RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 46899999999999999999999999999998864 4456 89999999987 789999987 8999999999999
Q ss_pred eccC
Q 001755 957 ERRP 960 (1017)
Q Consensus 957 ~~r~ 960 (1017)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8874
No 81
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=7.6e-09 Score=115.50 Aligned_cols=206 Identities=12% Similarity=0.061 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHLFAARFK 283 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g-~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e 283 (1017)
++|.-+-..+...+..++|+.+++++|..+|.+..+|...+.++...+ +++++...++++++.+ |++..+|...+.+.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 355555555666788999999999999999999999999999999887 6899999999999865 99999999998888
Q ss_pred HHcCCH--HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHh
Q 001755 284 EQNGDI--DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 361 (1017)
Q Consensus 284 e~~g~~--~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~ 361 (1017)
...+.. +++..++++++ +.+|++..+|..++.++.+.|+++++++.++++|+..+.+. ..|...+..+..
T Consensus 117 ~~l~~~~~~~el~~~~kal-~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~------sAW~~R~~vl~~- 188 (320)
T PLN02789 117 EKLGPDAANKELEFTRKIL-SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN------SAWNQRYFVITR- 188 (320)
T ss_pred HHcCchhhHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch------hHHHHHHHHHHh-
Confidence 888863 77899999987 56999999999999999999999999999999999998773 355444433322
Q ss_pred h---CC----HHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHHhhcCCCC
Q 001755 362 S---RN----AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP-KQIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 362 ~---g~----~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~-~~~~~ar~l~e~al~~~~~~ 419 (1017)
. ++ .+++.....++|..+|.+..+|..+.-+....+.. .+...+...+.+++...+++
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 2 22 35788888999999999999998887777653221 11133556666666654443
No 82
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.2e-10 Score=117.08 Aligned_cols=78 Identities=29% Similarity=0.406 Sum_probs=70.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 879 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 879 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
.++++||||||+..+++++|++.|++||.|.+|+|+. -+||+||.|++.|+|..||.. |+.+|+|+.+++.+
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-------~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-------DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-------ccceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 3679999999999999999999999999999988742 358999999999999999988 89999999999999
Q ss_pred ccCCCC
Q 001755 958 RRPNTG 963 (1017)
Q Consensus 958 ~r~~~~ 963 (1017)
-+....
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 876544
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=6.8e-11 Score=108.16 Aligned_cols=83 Identities=25% Similarity=0.347 Sum_probs=76.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
.+..|||.++...+++++|.+.|..||+|+++++.+ |+.||..|||+.|+|++.+.|++||.. ||..|.|++|.|+++
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNL-DRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNL-DRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeecc-ccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 579999999999999999999999999999998755 778999999999999999999999998 899999999999998
Q ss_pred cCCCC
Q 001755 959 RPNTG 963 (1017)
Q Consensus 959 r~~~~ 963 (1017)
..+.+
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 76543
No 84
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.16 E-value=1e-10 Score=137.92 Aligned_cols=81 Identities=19% Similarity=0.369 Sum_probs=75.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
.++|||+||+.++++++|+++|+.||.|++|+| .+++.+|++||||||+|++.++|.+||+. |++.|+|+.|+|.++.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl-~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEE-EecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 479999999999999999999999999999986 57888899999999999999999999988 8999999999999887
Q ss_pred CCC
Q 001755 960 PNT 962 (1017)
Q Consensus 960 ~~~ 962 (1017)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 85
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.15 E-value=1.4e-10 Score=99.45 Aligned_cols=69 Identities=26% Similarity=0.521 Sum_probs=60.5
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEE
Q 001755 884 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 954 (1017)
Q Consensus 884 l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~ 954 (1017)
|||+|||+++++++|+++|+.||.|..+.+ ..++. |.++|+|||+|.+.++|.+|++. ++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~-~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRL-IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEE-EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEE-Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999998865 44555 88999999999999999999998 57999999885
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.14 E-value=1.5e-08 Score=120.09 Aligned_cols=253 Identities=16% Similarity=0.125 Sum_probs=138.9
Q ss_pred hHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 184 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 263 (1017)
Q Consensus 184 ~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~r 263 (1017)
.+|++++- .-.++..+|.....|..+++.+++.|+++++....--|--.+|.+.++|..++.+..++|+++.|+-+|.|
T Consensus 154 ~~eeA~~i-~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 154 DLEEAEEI-LMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CHHHHHHH-HHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34554422 22233455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 264 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 338 (1017)
Q Consensus 264 Al~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~-----~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~ 338 (1017)
|++.. |.+..+....+.++.++|+...|...|.+++ .+.|. ........+......++.+.|.+.++.++...
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLL-QLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHH-hhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 55533 4444555555555555555555555555554 23441 01111122223333333344444444443311
Q ss_pred cCCCcc--------------------------------------------------------------------------
Q 001755 339 KGKEHS-------------------------------------------------------------------------- 344 (1017)
Q Consensus 339 ~~~~~~-------------------------------------------------------------------------- 344 (1017)
.+....
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 100000
Q ss_pred --------------------CcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCH-HHHHHHHHHHhhCCChhHHH
Q 001755 345 --------------------QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK-PLLEALIHFESIQSSPKQID 403 (1017)
Q Consensus 345 --------------------~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~-~lw~~~a~~E~~~~~~~~~~ 403 (1017)
...+.|+...++.+.. .|+++.|..+|..++...+... .+|..++..+...+.. +
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~---e 466 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-IGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY---E 466 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH---H
Confidence 0112233334444333 7889999999999998776654 4999999999998776 8
Q ss_pred HHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 001755 404 FLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAE 452 (1017)
Q Consensus 404 ~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~ 452 (1017)
.|...|+++|...|++- +.|+.|... ....|+.+.+..++
T Consensus 467 ~A~e~y~kvl~~~p~~~-----D~Ri~Lasl----~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNL-----DARITLASL----YQQLGNHEKALETL 506 (895)
T ss_pred HHHHHHHHHHhcCCCch-----hhhhhHHHH----HHhcCCHHHHHHHH
Confidence 89999999999998873 334444443 34455555444433
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.14 E-value=1.6e-10 Score=119.02 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=68.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEecc
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 959 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~r 959 (1017)
.+++|||+||++.+|+++|+++|+.||+|.+|+| +++. ..+|||||+|++.++++.||..+|..|.|+.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I-~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEI-IRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEE-ecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999886 4453 45689999999999999999999999999999997643
No 88
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.2e-08 Score=110.23 Aligned_cols=215 Identities=10% Similarity=0.085 Sum_probs=182.9
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
+.|...-.|...+.|+.-.|.+.+|+..|.+|...++.+...|+.|+..+.-.+..|.|..+|.+|.+++ +.+..-.+.
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LY 385 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLY 385 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHH
Confidence 4566667899999999989999999999999999999999999999999999999999999999999966 766666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCcc-CcHHHHHHHHHHH
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPMLYAQYSRF 357 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~-~~~~~l~~~~a~~ 357 (1017)
++.-+.+.++++-|.+.|..++ .+.|.++-+....+.+....+.+.+|..+|+.++...+..... ..-..++.+++..
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~-ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQAL-AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHH-hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 7776778999999999999987 5799999998888888888899999999999999655533211 1123355778888
Q ss_pred HHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001755 358 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 358 l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~ 419 (1017)
..+ ++.+++|...|+++|...|.+..++...+-+-...++. +.|...|.++|...|++
T Consensus 465 ~Rk-l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl---d~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 465 YRK-LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL---DKAIDHFHKALALKPDN 522 (611)
T ss_pred HHH-HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh---HHHHHHHHHHHhcCCcc
Confidence 666 99999999999999999999999998888777777666 78899999999998887
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=7.1e-09 Score=111.62 Aligned_cols=177 Identities=14% Similarity=0.032 Sum_probs=129.5
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChH
Q 001755 198 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 274 (1017)
Q Consensus 198 ~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~---~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~ 274 (1017)
+.+....+.+...+..+...|+++.|+..|++++...|.++ ..|+.++.++...|++++|...|+++++.+ |+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCc
Confidence 45666778999999999999999999999999999999876 688999999999999999999999999966 76665
Q ss_pred ---HHHHHHHHHHHc--------CCHHHHHHHHHHHhhhcCCCcHHHHH-----------------HHHHHHHHcCCHHH
Q 001755 275 ---IHLFAARFKEQN--------GDIDGARAAYQLVHTETSPGLLEAII-----------------KHANMERRLGNLED 326 (1017)
Q Consensus 275 ---i~l~~a~~ee~~--------g~~~~Ar~iy~~~~~~l~P~~~~~~~-----------------~~a~~e~r~g~~e~ 326 (1017)
.|+..+.++... |++++|++.|++++. .+|++...+. ..+.++.+.|++++
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR-RYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-HCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 577777777654 789999999999874 5888765542 33444555566666
Q ss_pred HHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcC
Q 001755 327 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 380 (1017)
Q Consensus 327 A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P 380 (1017)
|+..|++++...++.. .....+..++..+.. .|++++|..+++.+...+|
T Consensus 185 A~~~~~~al~~~p~~~---~~~~a~~~l~~~~~~-lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 185 AINRFETVVENYPDTP---ATEEALARLVEAYLK-LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHCCCCc---chHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 6666666666555421 113344455555444 6666666666655555544
No 90
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.12 E-value=1.4e-10 Score=136.78 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=72.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
..++|||||||+++++++|+++|++||.|++|+| ++|+.+|+++|||||+|.+.+++++||+. ||..|+||.|+|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I-~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINM-SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEE-eecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3589999999999999999999999999999986 56888999999999999999999999986 899999999999854
Q ss_pred c
Q 001755 959 R 959 (1017)
Q Consensus 959 r 959 (1017)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=4.1e-09 Score=119.57 Aligned_cols=196 Identities=14% Similarity=0.064 Sum_probs=128.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHH
Q 001755 211 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 290 (1017)
Q Consensus 211 l~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~ 290 (1017)
+.-+.+.|++..|..+||.|+..+|.+.+.|..++.....+++-..|...|+||+++. |++.++.+.+|--+...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 4455678999999999999999999999999999999999999999999999999965 999999999999888888888
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHh
Q 001755 291 GARAAYQLVHTETSPGLLEAIIKHANMERRLG---------NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 361 (1017)
Q Consensus 291 ~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g---------~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~ 361 (1017)
.|.+.|..++.. .|.+ .|+..+.-..+-+ .+....++|-.+....+...+ +.+...++-+.+.
T Consensus 371 ~Al~~L~~Wi~~-~p~y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~D----pdvQ~~LGVLy~l- 442 (579)
T KOG1125|consen 371 QALKMLDKWIRN-KPKY--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKID----PDVQSGLGVLYNL- 442 (579)
T ss_pred HHHHHHHHHHHh-Cccc--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCC----hhHHhhhHHHHhc-
Confidence 899988887532 3321 1222111111100 122333444444444442211 4455555555444
Q ss_pred hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001755 362 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 418 (1017)
Q Consensus 362 ~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~ 418 (1017)
.|++++|..+|+.||...|.+..+|++|.......... +.|...|.+||+..|.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s---~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS---EEAISAYNRALQLQPG 496 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc---HHHHHHHHHHHhcCCC
Confidence 56666666666666666666666666655554443332 4555555555555554
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.1e-08 Score=108.97 Aligned_cols=244 Identities=14% Similarity=0.110 Sum_probs=183.1
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
+||..+..-..|+-++...|++++...+-.+.+........-|+--+..+...++++.|..+-++++.+. +++...+++
T Consensus 261 ~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alil 339 (564)
T KOG1174|consen 261 ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALIL 339 (564)
T ss_pred CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHh
Confidence 5666666777777777777777777777777777766667777777777777777777777777777754 677777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHH-HH
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS-RF 357 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a-~~ 357 (1017)
-+.++...++.++|.-.|+.+. .+.|..++.|..++..+...|.+.+|..+-..++...+....+ +--++ ..
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq-~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~------LtL~g~~V 412 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQ-MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS------LTLFGTLV 412 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHH-hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh------hhhhccee
Confidence 7777777788888777777764 4677777777777777777788877777777777777665321 11111 11
Q ss_pred HHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHH
Q 001755 358 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLE 437 (1017)
Q Consensus 358 l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~ 437 (1017)
+...-.--++|.+.++++|+..|......+..+++....+.. +.+.++++++|..++|+. |.....+
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~---~D~i~LLe~~L~~~~D~~----------LH~~Lgd 479 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT---KDIIKLLEKHLIIFPDVN----------LHNHLGD 479 (564)
T ss_pred eccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc---chHHHHHHHHHhhccccH----------HHHHHHH
Confidence 111133468999999999999999999999999998887776 557899999999988863 7888889
Q ss_pred HHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 438 FLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 438 fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
|+....-.+++...|..++..-|.++
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCccch
Confidence 99888889999999999998888664
No 93
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.7e-10 Score=117.00 Aligned_cols=86 Identities=28% Similarity=0.514 Sum_probs=79.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEE
Q 001755 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 955 (1017)
Q Consensus 877 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~V 955 (1017)
..+++|.|||-.||.+..+.+|-.+|-.||.|.+.+|++ |+.|+.+||||||.|++..+++.||.+ ||+.|+-++|+|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv-DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV-DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee-hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 345789999999999999999999999999999998865 889999999999999999999999998 899999999999
Q ss_pred EeccCCCC
Q 001755 956 EERRPNTG 963 (1017)
Q Consensus 956 e~~r~~~~ 963 (1017)
..+|++..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 99998753
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=5.5e-09 Score=108.97 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=114.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH-HHcCC--HHHHH
Q 001755 217 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGD--IDGAR 293 (1017)
Q Consensus 217 ~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e-e~~g~--~~~Ar 293 (1017)
.++.++++..|+++|..+|++.+.|+.++.++...|+++.|..+|++|+.+. |+++.++..+|.++ ...|+ .++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4566889999999999999999999999999999999999999999999965 99999999999965 67777 59999
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 001755 294 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE 342 (1017)
Q Consensus 294 ~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~ 342 (1017)
++|++++ .++|++..+++.++..+.++|++++|+..|+++++..+.+.
T Consensus 131 ~~l~~al-~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 131 EMIDKAL-ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHH-HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999987 56999999999999999999999999999999999998764
No 95
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.09 E-value=2.2e-07 Score=110.94 Aligned_cols=239 Identities=18% Similarity=0.105 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 249 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~ 249 (1017)
+.|.....+.+.-..|-++++...-+ .+-....++...+..|+++.+...||+.+...|++.+...-++.++.
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~-------~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDN-------FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCC-------ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 45667777777766677776432211 13366778889999999999999999999999999999999999888
Q ss_pred HcC----CHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc----CCCcHHHHHHHHHHHHHc
Q 001755 250 ASG----SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET----SPGLLEAIIKHANMERRL 321 (1017)
Q Consensus 250 ~~g----~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l----~P~~~~~~~~~a~~e~r~ 321 (1017)
..+ ..+.|.+++.++++.. |.+.+.|+.++.+++.. +...+..+|.+++..+ .+=-+++..+.+.+..++
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 764 5789999999999965 88999999999999864 5555577776654211 122367888999999999
Q ss_pred CCHHHHHHHHHHHHHhhc---CCCc-cCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCC
Q 001755 322 GNLEDAFSLYEQAIAIEK---GKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 397 (1017)
Q Consensus 322 g~~e~A~~iye~al~~~~---~~~~-~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~ 397 (1017)
|++++|+..|++|+.... +.+. ..+...+-.++|+++.. .++.+.|-++|...++.+|...+.++.+.-|....+
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~-l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE-LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 999999999999998832 1111 11223345778888776 999999999999999999999999999987876665
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCCC
Q 001755 398 SPKQIDFLEQLVDKFLMSNSDSPS 421 (1017)
Q Consensus 398 ~~~~~~~ar~l~e~al~~~~~~~~ 421 (1017)
+. ..+-.++..++..+..++.
T Consensus 545 ~~---~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 545 NL---YEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred Cc---HHHHHHHHHHHhcccCCcH
Confidence 54 5677888888887766653
No 96
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=1.1e-08 Score=119.22 Aligned_cols=248 Identities=15% Similarity=0.146 Sum_probs=180.3
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 269 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~--------~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~- 269 (1017)
-+|..+.+-+.++..+...|+++.|+.+|++||.. ++.-......++.++...+++++|..+|++|+.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666677777888999999999999999999988 666666666799999999999999999999999753
Q ss_pred ---CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhh-------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001755 270 ---KRL---PEIHLFAARFKEQNGDIDGARAAYQLVHT-------ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 336 (1017)
Q Consensus 270 ---p~~---~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~-------~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~ 336 (1017)
+.+ ..++..+|.++...|++++|+..+++++. ...|.....+...+.++...+++++|..+|.++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 333 45677789999999999999988887743 12344455677777788888999999999999999
Q ss_pred hhcCC--CccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCC-----C----HHHHHHHHHHHhhCCChhHHHHH
Q 001755 337 IEKGK--EHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL-----S----KPLLEALIHFESIQSSPKQIDFL 405 (1017)
Q Consensus 337 ~~~~~--~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~-----~----~~lw~~~a~~E~~~~~~~~~~~a 405 (1017)
+..+. +....+..++.+++.+++. .|++++|+++|++||.+... + ..+|..-... ..... ...+
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~-~~~k~---~~~a 428 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY-EELKK---YEEA 428 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-HHhcc---cchH
Confidence 87621 1222557788999999887 99999999999999986511 1 1244333333 22222 2456
Q ss_pred HHHHHHHhhc----CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 001755 406 EQLVDKFLMS----NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 457 (1017)
Q Consensus 406 r~l~e~al~~----~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~ 457 (1017)
..+|++++.. .|+.+.. .....-.....+..|+.+++..+......
T Consensus 429 ~~l~~~~~~i~~~~g~~~~~~------~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHPDV------TYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHhCCCCCch------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6666665433 2233221 22333444557888999888888877653
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=4e-09 Score=119.68 Aligned_cols=190 Identities=14% Similarity=0.165 Sum_probs=148.9
Q ss_pred HHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 001755 175 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 254 (1017)
Q Consensus 175 ~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~ 254 (1017)
...+-.....||-+|+. +|.+.+.|..++..--++++-..++..++|||+.+|++.++.+.++-.+...|.-
T Consensus 298 nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred cCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 33455557779999974 7888999999998888888888999999999999999999998888766654433
Q ss_pred HHH-----------------------------------------HHHHHHHHHhhcC--CChHHHHHHHHHHHHcCCHHH
Q 001755 255 DLA-----------------------------------------HNALARATHVFVK--RLPEIHLFAARFKEQNGDIDG 291 (1017)
Q Consensus 255 e~A-----------------------------------------~~v~~rAl~~~~p--~~~~i~l~~a~~ee~~g~~~~ 291 (1017)
..| ..+|-.|.... | .+++++.-++-++...|++++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~-~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL-PTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC-CCCCChhHHhhhHHHHhcchHHHH
Confidence 333 33344444322 3 477888888888888899999
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001755 292 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 371 (1017)
Q Consensus 292 Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i 371 (1017)
|.++|+.++. ..|++..+|.+++..+..-...++|+..|.||+++.|+.. ..+.+++--+. .+|.+++|.+.
T Consensus 449 aiDcf~~AL~-v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV------R~RyNlgIS~m-NlG~ykEA~~h 520 (579)
T KOG1125|consen 449 AVDCFEAALQ-VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV------RVRYNLGISCM-NLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHh-cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee------eeehhhhhhhh-hhhhHHHHHHH
Confidence 9999999874 5999999999999999888888999999999999998763 23344444433 48999999999
Q ss_pred HHHHhhhcCC
Q 001755 372 LVDSLDHVQL 381 (1017)
Q Consensus 372 ~~~al~~~P~ 381 (1017)
|-.+|...+.
T Consensus 521 lL~AL~mq~k 530 (579)
T KOG1125|consen 521 LLEALSMQRK 530 (579)
T ss_pred HHHHHHhhhc
Confidence 9999987665
No 98
>PLN02789 farnesyltranstransferase
Probab=99.09 E-value=2.5e-08 Score=111.36 Aligned_cols=210 Identities=11% Similarity=0.032 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANYPEYWIRYVLCM 248 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g-~~~~a~~lyeraL~~~p~~~~lW~~ya~~l 248 (1017)
.++.......+.+..++++| .++|.+..+|+.....+...+ ++++++..+++++..+|++..+|.....++
T Consensus 45 a~l~~~e~serAL~lt~~aI--------~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 45 AVYASDERSPRALDLTADVI--------RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHH--------HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 34433333333444455554 468999999999988888877 679999999999999999999999998888
Q ss_pred HHcCCH--HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc---CC
Q 001755 249 EASGSM--DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---GN 323 (1017)
Q Consensus 249 ~~~g~~--e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~---g~ 323 (1017)
...+.. +++..++++++++. |++..+|...+.++...|++++|.+.+++++ +.+|.+..+|..++.+..+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I-~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL-EEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHCCCchhHHHHHHHHHHhcccccc
Confidence 887763 67899999999965 9999999999999999999999999999987 46999999999999887665 33
Q ss_pred H----HHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHh---hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhh
Q 001755 324 L----EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 395 (1017)
Q Consensus 324 ~----e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~---~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~ 395 (1017)
+ +++.....++|...|.+.. .|..+..++... +++..+|...+.+++...|.+..+...++++-..
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~S------aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNES------PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcC------HHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 3 5788888899999998743 444433333220 2455679999999999999999888888877653
No 99
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.08 E-value=3.5e-08 Score=122.62 Aligned_cols=190 Identities=13% Similarity=-0.010 Sum_probs=154.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHH
Q 001755 196 VKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 275 (1017)
Q Consensus 196 ~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i 275 (1017)
...+.|++++.=..-+....++|+++.|+..|++||...|++......++.++...|+.++|+.++++++. -.+.....
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~ 104 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRG 104 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHH
Confidence 34566777776666666778899999999999999999999964444999988889999999999999993 11333444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHH
Q 001755 276 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 355 (1017)
Q Consensus 276 ~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a 355 (1017)
.+.+|.++...|++++|+++|++++ +.+|++..++..++.++...++.++|+..+++++...+... .+..++
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL-~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-------~~l~la 176 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSL-KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-------NYMTLS 176 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-------HHHHHH
Confidence 4445889999999999999999987 56999999999999999999999999999999999988741 223334
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhh
Q 001755 356 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 395 (1017)
Q Consensus 356 ~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~ 395 (1017)
.+... .++..+|.+.|+++++.+|++..++..++.....
T Consensus 177 yL~~~-~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 177 YLNRA-TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHHh-cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44333 6777779999999999999999988888776533
No 100
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.08 E-value=4.7e-07 Score=112.72 Aligned_cols=408 Identities=12% Similarity=0.011 Sum_probs=244.8
Q ss_pred cceeeeeeeec-cccC---------ccCCCCcchhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHcccHHHHHHHH
Q 001755 9 DVSICGCVCIS-SVDG---------YYLCPNNFFFLLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 78 (1017)
Q Consensus 9 ~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy 78 (1017)
=+|+|+....+ ++|. ..+|.+. .+..|++++...+. +......++......++.+.+..++
T Consensus 21 ~~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~------Al~~L~qaL~~~P~---~~~av~dll~l~~~~G~~~~A~~~~ 91 (822)
T PRK14574 21 ALFISGFVVNPAMADTQYDSLIIRARAGDTAP------VLDYLQEESKAGPL---QSGQVDDWLQIAGWAGRDQEVIDVY 91 (822)
T ss_pred HHHHcccccCccchhHHHHHHHHHHhCCCHHH------HHHHHHHHHhhCcc---chhhHHHHHHHHHHcCCcHHHHHHH
Confidence 36788877777 7773 4556666 89999999999888 3223337777777789999999999
Q ss_pred HHHHhcc--hh---------------hHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhcCCccccccccccccCCC
Q 001755 79 TRILENP--IQ---------------QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQP 141 (1017)
Q Consensus 79 ~R~l~~P--~~---------------~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (1017)
+|++ .| .. ++++=.+.|++.+...+ .. . ++...+...+....+. .+++.-
T Consensus 92 eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-~n---~-~~l~gLa~~y~~~~q~---~eAl~~---- 158 (822)
T PRK14574 92 ERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-TN---P-DLISGMIMTQADAGRG---GVVLKQ---- 158 (822)
T ss_pred HHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC---H-HHHHHHHHHHhhcCCH---HHHHHH----
Confidence 9966 33 11 11122222333332211 10 0 0000000001000000 000000
Q ss_pred cccccCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCCh-
Q 001755 142 DATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF- 220 (1017)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~- 220 (1017)
..+.... ..+ ...+ ..+-.++.......+++..|++.+. ++|.+.+.+..|...+...|-.
T Consensus 159 -----l~~l~~~-dp~---~~~~-l~layL~~~~~~~~~AL~~~ekll~--------~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 159 -----ATELAER-DPT---VQNY-MTLSYLNRATDRNYDALQASSEAVR--------LAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred -----HHHhccc-Ccc---hHHH-HHHHHHHHhcchHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCcH
Confidence 0000000 000 0001 0111233333444446666777664 4677777888888777443311
Q ss_pred -----------------------------------------------HHHHHHHHHHHHhc---CCCHHHH----HHHHH
Q 001755 221 -----------------------------------------------NKVVKLYERCLIAC---ANYPEYW----IRYVL 246 (1017)
Q Consensus 221 -----------------------------------------------~~a~~lyeraL~~~---p~~~~lW----~~ya~ 246 (1017)
+++..-++..+... |.....| +...-
T Consensus 221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 23444555555532 3322333 45555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----CCCcHHHHHHHHHHHHHc
Q 001755 247 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET-----SPGLLEAIIKHANMERRL 321 (1017)
Q Consensus 247 ~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l-----~P~~~~~~~~~a~~e~r~ 321 (1017)
.+...+++.+++..|+.......+--+.+....|..+..++..++|..+|..++..- .|..+.....+...+...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 666678888888888765532212223445556888888899999999999976431 122344346666777788
Q ss_pred CCHHHHHHHHHHHHHhhcCCC--------c-cCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 001755 322 GNLEDAFSLYEQAIAIEKGKE--------H-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 392 (1017)
Q Consensus 322 g~~e~A~~iye~al~~~~~~~--------~-~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~ 392 (1017)
+++++|+.++++..+..|-.. . ...........+..+.- .|++.+|.+++++++...|.+..+++.++++
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~-~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA-LNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999998555100 0 01112222334444344 8999999999999999999999999999999
Q ss_pred HhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 001755 393 ESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELR 469 (1017)
Q Consensus 393 E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~~~~~~k 469 (1017)
+...+.+ ..++.++++++...|++.. +-...+.-....|+.+.++++.+...+.+|++......+
T Consensus 460 ~~~Rg~p---~~A~~~~k~a~~l~P~~~~---------~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 460 YLARDLP---RKAEQELKAVESLAPRSLI---------LERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred HHhcCCH---HHHHHHHHHHhhhCCccHH---------HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 9999988 7789999998888777621 233344445566899999999999999999997655544
No 101
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.07 E-value=4.3e-08 Score=114.57 Aligned_cols=234 Identities=16% Similarity=0.125 Sum_probs=183.2
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHcCCHHHH
Q 001755 214 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-EIHLFAARFKEQNGDIDGA 292 (1017)
Q Consensus 214 e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~-~i~l~~a~~ee~~g~~~~A 292 (1017)
....|+++.|.+...++....|...-.++..+......|+.+.|...|+++++.. |... .+.+.++.+....|+++.|
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3567999999999999999999878888888999999999999999999999865 6654 6788889999999999999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCc-c---------------------------
Q 001755 293 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-S--------------------------- 344 (1017)
Q Consensus 293 r~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~-~--------------------------- 344 (1017)
+..++++. +..|++..++..++.++.+.|++++|+.++++.++....... .
T Consensus 173 l~~l~~l~-~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLL-EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHH-HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999986 459999999999999999999999999998888854211000 0
Q ss_pred ---C-----cHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH----HHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 001755 345 ---Q-----TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP----LLEALIHFESIQSSPKQIDFLEQLVDKF 412 (1017)
Q Consensus 345 ---~-----~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~----lw~~~a~~E~~~~~~~~~~~ar~l~e~a 412 (1017)
. ....++..++..+.. .|++++|.++++++++..|++.. ++..+..+. .++ .+.+.++++++
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~-~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~--~~~---~~~~~~~~e~~ 325 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLID-CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK--PED---NEKLEKLIEKQ 325 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHH-CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC--CCC---hHHHHHHHHHH
Confidence 0 124556667776666 99999999999999999999885 333333332 122 36789999999
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH--HHHhcCCC
Q 001755 413 LMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDR--HARLFLPH 462 (1017)
Q Consensus 413 l~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r--~~~~~~~~ 462 (1017)
++..|+++. ..+...+....-..|+.+.+++.+++ ..+..|++
T Consensus 326 lk~~p~~~~-------~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 326 AKNVDDKPK-------CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred HHhCCCChh-------HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 999998861 01455566666778999999999994 55565654
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2.3e-08 Score=119.21 Aligned_cols=269 Identities=15% Similarity=0.118 Sum_probs=199.7
Q ss_pred HHHHHHHhhhhHhhhhccCCcccCCCC---cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001755 174 KAKEFDSKIIGFETAIRRPYFHVKPLS---VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 250 (1017)
Q Consensus 174 ~~~~~~~~~~~fE~~I~r~y~~~~~l~---~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~ 250 (1017)
..+.+.+....|.+++.+.-. +...| ..++.+=.+++.+++..++.+.|...|...|..+|.|.+.+++++.+...
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~-~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLE-VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhh-hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 444555566667776644110 11111 12355677778888999999999999999999999999999999976666
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHHH----------
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANMER---------- 319 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~-~~~~~~~~a~~e~---------- 319 (1017)
.++..+|...+..++.+. ..+|.+|-+++.++....+...|.+-|+.++...... +.-..+.+++++.
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 789999999999999855 8899999999999998888888888777766543322 3455667777644
Q ss_pred --HcCCHHHHHHHHHHHHHhhcCCCccCcHHHHH--HHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhh
Q 001755 320 --RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 395 (1017)
Q Consensus 320 --r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~--~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~ 395 (1017)
+.+.+++|+.+|.++|...|.+ +| .-.+-.|.. .|++.+|+.||.+..+..-+..++|+++++....
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpkN--------~yAANGIgiVLA~-kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPKN--------MYAANGIGIVLAE-KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcch--------hhhccchhhhhhh-ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 2345778888888888888765 33 224445555 9999999999999999888888999999998887
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 396 QSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 396 ~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
++.. ..+.+.|+.+++.+-.+. +.+ +...+.+-....|....++.....++.+.|..-
T Consensus 693 ~~qy---~~AIqmYe~~lkkf~~~~---~~~----vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 693 QGQY---RLAIQMYENCLKKFYKKN---RSE----VLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHH---HHHHHHHHHHHHHhcccC---CHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 7544 678889999988764332 223 333333444456668899999999998888764
No 103
>PLN03077 Protein ECB2; Provisional
Probab=99.06 E-value=5.4e-08 Score=124.85 Aligned_cols=258 Identities=9% Similarity=0.032 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 249 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~ 249 (1017)
..|.+.......+..|++... .+...|..++.-+.+.|+.++|+.+|++.+....-+...+..++..+.
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE-----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHh
Confidence 455555555555555655332 234589999988888899999999999988766666777777778888
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001755 250 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 329 (1017)
Q Consensus 250 ~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~ 329 (1017)
+.|+++.++.++..+++.-...+..+...+..++.+.|++++|+++|+.. +.+...|..++..+.+.|+.++|..
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 88899999999888887555556667777889999999999999999984 2357899999999999999999999
Q ss_pred HHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCC--CHHHHHHHHHHHhhCCChhHHHHHHH
Q 001755 330 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL--SKPLLEALIHFESIQSSPKQIDFLEQ 407 (1017)
Q Consensus 330 iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~--~~~lw~~~a~~E~~~~~~~~~~~ar~ 407 (1017)
+|++..+...... ...+..+...+.+ .|++++|+++|+.+.+..+. +...|..++++....|.. ++|.+
T Consensus 576 lf~~M~~~g~~Pd-----~~T~~~ll~a~~~-~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~---~eA~~ 646 (857)
T PLN03077 576 LFNRMVESGVNPD-----EVTFISLLCACSR-SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL---TEAYN 646 (857)
T ss_pred HHHHHHHcCCCCC-----cccHHHHHHHHhh-cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH---HHHHH
Confidence 9999886432211 1223333344444 89999999999999855433 356889999998887765 78888
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 408 LVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 408 l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
++++.- ..|+ ..+|..++.-...+|+.+..+.+.++..++-|+.-
T Consensus 647 ~~~~m~-~~pd----------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 647 FINKMP-ITPD----------PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHCC-CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 888741 1222 23799999988999999999999999998877653
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.06 E-value=5.4e-09 Score=127.47 Aligned_cols=136 Identities=10% Similarity=0.039 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001755 204 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 283 (1017)
Q Consensus 204 l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e 283 (1017)
.+....+++.+.+.|.++.+..++++|+..+|.+..+++.++..+.+.+++++|+..+++++.. .|+++..++.+|.++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999995 599999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 284 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 284 e~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
.+.|++++|..+|++++. .+|+...+|+.++..++..|+.++|...|+++++....-
T Consensus 165 ~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 165 DEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 999999999999999986 599999999999999999999999999999999987653
No 105
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=7.7e-09 Score=109.12 Aligned_cols=236 Identities=14% Similarity=0.075 Sum_probs=195.1
Q ss_pred HHHHH--HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 001755 204 LENWH--NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 281 (1017)
Q Consensus 204 l~~W~--~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~ 281 (1017)
++-|. .+++.+...|-+.+|.+.++.+|...|. ++-++.+.+.+.+.+..+.|..+|...++.+ |.+..+..-.|+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 45554 3578888999999999999999999986 8888999999999999999999999999987 888999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHh
Q 001755 282 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 361 (1017)
Q Consensus 282 ~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~ 361 (1017)
+.+.+++.++|.++|.+++ +++|.+.+++--.+.-+.--++.+-|...|+|.+...... ++|+.+.+-.+.-
T Consensus 299 i~eam~~~~~a~~lYk~vl-k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s------peLf~NigLCC~y- 370 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVL-KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS------PELFCNIGLCCLY- 370 (478)
T ss_pred HHHHHHhHHHHHHHHHHHH-hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC------hHHHhhHHHHHHh-
Confidence 9999999999999999987 4699988876555555555788999999999999886654 7888888777655
Q ss_pred hCCHHHHHHHHHHHhhhc--CCC-HHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 001755 362 SRNAEKARQILVDSLDHV--QLS-KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 438 (1017)
Q Consensus 362 ~g~~e~Ar~i~~~al~~~--P~~-~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~f 438 (1017)
.+.+|-+...|++++..- |+. .++|.++.......|+. .-+..||.-+|..++++.+. ..-..-+
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~---nlA~rcfrlaL~~d~~h~ea---------lnNLavL 438 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF---NLAKRCFRLALTSDAQHGEA---------LNNLAVL 438 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch---HHHHHHHHHHhccCcchHHH---------HHhHHHH
Confidence 899999999999999853 333 35999999888887766 67899999999988876433 1122234
Q ss_pred HHhhCCHHHHHHHHHHHHHhcCC
Q 001755 439 LGLFGDAQLIKKAEDRHARLFLP 461 (1017)
Q Consensus 439 e~~~Gd~~~~~~~~~r~~~~~~~ 461 (1017)
+-+-|+++.++.++.-+..+.|+
T Consensus 439 ~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HhhcCchHHHHHHHHHhhhhCcc
Confidence 56679999999999998888876
No 106
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3.2e-10 Score=115.88 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=76.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEeccC
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 960 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r~ 960 (1017)
.-+||+.|...++-++|++.|.+||+|.+++| +||..|+++||||||.|-+.++|+.||.. ||.-|++|.|+-.++..
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akv-irD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKV-IRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceE-eecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 68999999999999999999999999999987 89999999999999999999999999988 79999999999999877
Q ss_pred CCC
Q 001755 961 NTG 963 (1017)
Q Consensus 961 ~~~ 963 (1017)
++.
T Consensus 142 Kp~ 144 (321)
T KOG0148|consen 142 KPS 144 (321)
T ss_pred Ccc
Confidence 664
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.03 E-value=5.4e-09 Score=103.38 Aligned_cols=113 Identities=11% Similarity=-0.042 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc
Q 001755 224 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET 303 (1017)
Q Consensus 224 ~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l 303 (1017)
..+|++++...|.+ |..++..+...|++++|...|++++.+ .|.+..+|..+|.++...|++++|...|++++ .+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL-ML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hc
Confidence 35788888888763 667788888888999999999998875 48888999999999989999999999999987 57
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 304 SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 304 ~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
+|++..+|+.++.++.+.|++++|+..|++++...+++
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 89889999999998888999999999999999888876
No 108
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=1.5e-09 Score=109.90 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=77.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
..+.|.|.-||..+|+++|+.+|+..|+|++|++ +||+-+|++-|||||-|.++++|++||.. ||..+..+.|+|.++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKL-vRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKL-VRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeee-eeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4578999999999999999999999999999985 89999999999999999999999999998 899999999999999
Q ss_pred cCCC
Q 001755 959 RPNT 962 (1017)
Q Consensus 959 r~~~ 962 (1017)
||..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 9865
No 109
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.01 E-value=2.7e-07 Score=115.58 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA-NYPEYWIRYVLCM 248 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p-~~~~lW~~ya~~l 248 (1017)
..|-+.......+..|++... .+...|..++..+.+.|++++|..+|++.+.... -+...+..++..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~-----------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE-----------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-----------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 345555555555666666542 1345799999888888999999999998876532 2344555556666
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001755 249 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 328 (1017)
Q Consensus 249 ~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~ 328 (1017)
...++.+.++.++..+++.....+..++..+...+.+.|++++|+++|+++. +.+...|..++..+.+.|+.++|.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHH
Confidence 6667777777777666654434455666667777777777777777777642 224667777777777777777777
Q ss_pred HHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHhhCCChhHHHHHHH
Q 001755 329 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV-QLSKPLLEALIHFESIQSSPKQIDFLEQ 407 (1017)
Q Consensus 329 ~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~-P~~~~lw~~~a~~E~~~~~~~~~~~ar~ 407 (1017)
.+|++.....-... ...+..+...+.+ .|++++|++++..+++.. +.+..++..++++....+.. +.|++
T Consensus 311 ~lf~~M~~~g~~pd-----~~t~~~ll~a~~~-~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~---~~A~~ 381 (697)
T PLN03081 311 CLYYEMRDSGVSID-----QFTFSIMIRIFSR-LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM---EDARN 381 (697)
T ss_pred HHHHHHHHcCCCCC-----HHHHHHHHHHHHh-ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH---HHHHH
Confidence 77777654321111 2344444455455 777777777777777653 44555777777777666554 66777
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 001755 408 LVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 457 (1017)
Q Consensus 408 l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~ 457 (1017)
+|++.... +. ..|...+.-...+|+.+++.+++++..+
T Consensus 382 vf~~m~~~--d~----------~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 382 VFDRMPRK--NL----------ISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHhCCCC--Ce----------eeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77665432 11 1466677777777777777777777654
No 110
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1e-07 Score=104.22 Aligned_cols=121 Identities=20% Similarity=0.177 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 001755 218 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ 297 (1017)
Q Consensus 218 g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~ 297 (1017)
|++++|...|..||..+..+.+..++.+...+.+|++++|+++|-+...++ -++.++++++|.+++.+.+...|+++|.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 444555555555555544445555555555555555555555554444322 3444555555555555555555555555
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001755 298 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 298 ~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~ 340 (1017)
++. .+.|+++.++.+++.++-+.|+-..|..++-.....+|.
T Consensus 583 q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 583 QAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred Hhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 432 344555555555555555555554454444444444443
No 111
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.00 E-value=3.5e-08 Score=110.15 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=84.0
Q ss_pred hHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 001755 184 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALA 262 (1017)
Q Consensus 184 ~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g-~~e~A~~v~~ 262 (1017)
.....|...|..+..-.+.++.+|..|+.|+.+.+.+.++-++|..||..+|+++++|+..|.|+..-+ +++.||++|.
T Consensus 85 si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 85 SIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 344444444444444455677899999999999999999999999999999999999999999999854 4999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHH
Q 001755 263 RATHVFVKRLPEIHLFAARFKEQ 285 (1017)
Q Consensus 263 rAl~~~~p~~~~i~l~~a~~ee~ 285 (1017)
|+|+. +|+++.+|..+-+++..
T Consensus 165 rgLR~-npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 165 RGLRF-NPDSPKLWKEYFRMELM 186 (568)
T ss_pred HHhhc-CCCChHHHHHHHHHHHH
Confidence 99995 59999999998666643
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.00 E-value=3e-08 Score=121.06 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=132.1
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHH
Q 001755 232 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 311 (1017)
Q Consensus 232 ~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~ 311 (1017)
...|...+..+.++..+...|++++|..++++++++ .|.+..+++.++..+.+.+.+++|+..+++++ ...|++...+
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l-~~~p~~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF-SGGSSSAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh-hcCCCCHHHH
Confidence 446778999999999999999999999999999985 59999999999999999999999999999987 4699999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHH
Q 001755 312 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 388 (1017)
Q Consensus 312 ~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~ 388 (1017)
+.++.++..+|.+++|..+|++++...++. ...++.|+..+.+ .|+.++|...|+++++...+-..-+..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~------~~~~~~~a~~l~~-~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEF------ENGYVGWAQSLTR-RGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 999999999999999999999999966654 6788999999777 999999999999999987665544333
No 113
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.99 E-value=4.4e-09 Score=128.15 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=72.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
.+++|||+||+..+++++|+++|++||.|++|+|+. + .+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|.++
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~-d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML-D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE-C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 457899999999999999999999999999988644 4 5789999999999999999999987 899999999999987
Q ss_pred cCC
Q 001755 959 RPN 961 (1017)
Q Consensus 959 r~~ 961 (1017)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 654
No 114
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.98 E-value=3.5e-09 Score=114.40 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=70.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHh-cCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
..+++||.|||++..+.+|+++|. +.|+|..|.++. ..+|++||||.|||+++|.+++|++. |.+.++||.|+|.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~--D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF--DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec--ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 447799999999999999999996 799999987644 44689999999999999999999998 89999999999987
Q ss_pred ccC
Q 001755 958 RRP 960 (1017)
Q Consensus 958 ~r~ 960 (1017)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 764
No 115
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.98 E-value=2.1e-07 Score=108.37 Aligned_cols=230 Identities=18% Similarity=0.205 Sum_probs=176.4
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHcCCHHHH
Q 001755 215 ERDGDFNKVVKLYERCLIACANYPEYWIRY-VLCMEASGSMDLAHNALARATHVFVKRLP-EIHLFAARFKEQNGDIDGA 292 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~~lW~~y-a~~l~~~g~~e~A~~v~~rAl~~~~p~~~-~i~l~~a~~ee~~g~~~~A 292 (1017)
...|++++|.++..++-..... +.+.+.. +......|+++.|...|++|.+.. |+.. ...+..+.+....|+++.|
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELA-DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHCCCHHHH
Confidence 3469999998777776554333 4555444 555478999999999999999854 5543 3444558999999999999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCc-----------------------------
Q 001755 293 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH----------------------------- 343 (1017)
Q Consensus 293 r~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~----------------------------- 343 (1017)
.+.++++. +..|++..++...+.++.+.|+.++|..+|.+..+.......
T Consensus 173 l~~l~~~~-~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLL-EVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999976 579999999999999999999999999888887754321100
Q ss_pred -------cCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcC
Q 001755 344 -------SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN 416 (1017)
Q Consensus 344 -------~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~ 416 (1017)
....+.+...+++.+.. .|+.++|.++++++++. +.+..+...+..+.. ++. +.+.+.+++.++..
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~-~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~--~~~---~~al~~~e~~lk~~ 324 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIE-CDDHDTAQQIILDGLKR-QYDERLVLLIPRLKT--NNP---EQLEKVLRQQIKQH 324 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccC--CCh---HHHHHHHHHHHhhC
Confidence 00124455667788777 99999999999999984 556777777776633 333 66788889999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 417 SDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 417 ~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
|+++. +...+.......|+.+.+++.+++..+.-|+..
T Consensus 325 P~~~~---------l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 325 GDTPL---------LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred CCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 98853 577788888899999999999999999887653
No 116
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=9.9e-09 Score=108.34 Aligned_cols=208 Identities=9% Similarity=-0.052 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 001755 203 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 282 (1017)
Q Consensus 203 ~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ 282 (1017)
..+.+.-+.+.+.+..+.++|..+|...|...|.+..+....+.+++..++.++|.++|+++++.+ |.+.+..--.|.-
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVG 333 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeeeec
Confidence 346787788888888899999999999999999999999999999999999999999999999965 6554443333433
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhh
Q 001755 283 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 362 (1017)
Q Consensus 283 ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~ 362 (1017)
+.-.++.+.|...|.|++ ...-.+++++.+.+-++.-.+.+|-+...|+||+........ ...+|.+++..... .
T Consensus 334 yfY~~~PE~AlryYRRiL-qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~---aaDvWYNlg~vaV~-i 408 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRIL-QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ---AADVWYNLGFVAVT-I 408 (478)
T ss_pred cccCCChHHHHHHHHHHH-HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch---hhhhhhccceeEEe-c
Confidence 444689999999999987 467778999999999888899999999999999998764432 26789888877655 9
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001755 363 RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 363 g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~ 419 (1017)
||+.-|..+|+-+|..++++.+.+++++-++...|+. +.+|+++..+-...|+-
T Consensus 409 GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i---~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 409 GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI---LGARSLLNAAKSVMPDM 462 (478)
T ss_pred cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch---HHHHHHHHHhhhhCccc
Confidence 9999999999999999999999999999999998766 88999999998777764
No 117
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.98 E-value=1.6e-09 Score=131.93 Aligned_cols=76 Identities=24% Similarity=0.416 Sum_probs=70.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 883 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 883 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
+|||||||.++|+++|+++|++||.|.+|+| .+|..|++++|||||+|.+.++|++||+. ++..|+|+.|+|.+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v-~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRV-CRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 7999999999999999999999999999876 57888899999999999999999999987 7888999999998764
No 118
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=2.5e-09 Score=108.30 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=76.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
.++.|||-||.++++|.-|.++|++||.|..|+| +||-.|+++||||||.+.+.++|..||.. ||..+++|.|.|.++
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKv-irD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKV-IRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEE-EecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 4799999999999999999999999999999986 78888999999999999999999999988 899999999999998
Q ss_pred cCC
Q 001755 959 RPN 961 (1017)
Q Consensus 959 r~~ 961 (1017)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 754
No 119
>PLN03077 Protein ECB2; Provisional
Probab=98.97 E-value=4.2e-07 Score=116.66 Aligned_cols=256 Identities=11% Similarity=0.008 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--ANYPEYWIRYVLC 247 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~--p~~~~lW~~ya~~ 247 (1017)
..|-+.......+..|++... .+...|..++..+.+.|++++|..+|++..... |+ ...+..++..
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~-----------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a 398 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET-----------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSA 398 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC-----------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHH
Confidence 345555555555666666432 234589999999999999999999999876543 44 4455666667
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 001755 248 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 327 (1017)
Q Consensus 248 l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A 327 (1017)
+.+.|+++.|+.+++.+.+.-...+..++..+...+.+.|++++|+++|+++. .+ +...|..++..+.+.|+.++|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~-d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP---EK-DVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC---CC-CeeeHHHHHHHHHHCCCHHHH
Confidence 77788899999999888876545567788888888889999999999998853 23 356788888888888999999
Q ss_pred HHHHHHHHHhhcCCCccCcHHHH-------------------------------HHHHHHHHHHhhCCHHHHHHHHHHHh
Q 001755 328 FSLYEQAIAIEKGKEHSQTLPML-------------------------------YAQYSRFLHLVSRNAEKARQILVDSL 376 (1017)
Q Consensus 328 ~~iye~al~~~~~~~~~~~~~~l-------------------------------~~~~a~~l~~~~g~~e~Ar~i~~~al 376 (1017)
..+|++.+.....+.. +...+ +..+...+.+ .|++++|+++|+..
T Consensus 475 ~~lf~~m~~~~~pd~~--t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k-~G~~~~A~~~f~~~- 550 (857)
T PLN03077 475 LIFFRQMLLTLKPNSV--TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR-CGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHhCCCCCHh--HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH-cCCHHHHHHHHHhc-
Confidence 9998888754332211 11111 1123345455 89999999999886
Q ss_pred hhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001755 377 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 456 (1017)
Q Consensus 377 ~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~ 456 (1017)
..+...|..++.-....|.. +.+..+|++.+...- .|.. ..+...+.-....|..+++.++++...
T Consensus 551 ---~~d~~s~n~lI~~~~~~G~~---~~A~~lf~~M~~~g~-~Pd~-------~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 551 ---EKDVVSWNILLTGYVAHGKG---SMAVELFNRMVESGV-NPDE-------VTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred ---CCChhhHHHHHHHHHHcCCH---HHHHHHHHHHHHcCC-CCCc-------ccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 45678999999988888776 778999998775421 1111 024445556667788999999998887
Q ss_pred Hhc
Q 001755 457 RLF 459 (1017)
Q Consensus 457 ~~~ 459 (1017)
+.+
T Consensus 617 ~~~ 619 (857)
T PLN03077 617 EKY 619 (857)
T ss_pred HHh
Confidence 554
No 120
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.1e-10 Score=111.30 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=75.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
+.++||||+|..++++.-|...|-+||.|++|.+.+ |..+++.||||||+|+..++|.+||.. |+.+|-||.|+|..+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPl-DyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPL-DYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhccccc-chhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 358999999999999999999999999999988755 677889999999999999999999988 799999999999998
Q ss_pred cCCC
Q 001755 959 RPNT 962 (1017)
Q Consensus 959 r~~~ 962 (1017)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.97 E-value=6e-08 Score=119.05 Aligned_cols=198 Identities=9% Similarity=-0.006 Sum_probs=157.5
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCh---
Q 001755 197 KPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP--- 273 (1017)
Q Consensus 197 ~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~--- 273 (1017)
...++.+.+.|..++..+...++++.|..+++.++...|+...+|+..+.++.+.++++.+..+ +++.++ +.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~ 100 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWA 100 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchh
Confidence 3457888999999999999999999999999999999999999999999988888887777666 666655 4433
Q ss_pred ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 274 ----------------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 337 (1017)
Q Consensus 274 ----------------~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~ 337 (1017)
.++..+|.++.++|+.++|.++|++++ +++|++..+..++|.++... ++++|+.++.+|+..
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV-KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 678889999999999999999999987 57999999999999999988 999999999999876
Q ss_pred hcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhC-C----------------Chh
Q 001755 338 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ-S----------------SPK 400 (1017)
Q Consensus 338 ~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~-~----------------~~~ 400 (1017)
.-+ .+.+..+.++|++.+..+|++.+.+..+.+.-... + ..+
T Consensus 179 ~i~---------------------~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 179 FIK---------------------KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred HHh---------------------hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 322 44666677777777777777776554444432221 1 222
Q ss_pred HHHHHHHHHHHHhhcCCCCC
Q 001755 401 QIDFLEQLVDKFLMSNSDSP 420 (1017)
Q Consensus 401 ~~~~ar~l~e~al~~~~~~~ 420 (1017)
+.+.+..++.++|...++|.
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred hhhHHHHHHHHHHhcCCcch
Confidence 34567778888888877763
No 122
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.97 E-value=1.9e-09 Score=128.19 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=74.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEe
Q 001755 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 957 (1017)
Q Consensus 878 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~ 957 (1017)
+.+.++|||+|||..+++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||..+|..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i-~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQC-IKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 446789999999999999999999999999999986 5678889999999999999999999999999999999999976
Q ss_pred cc
Q 001755 958 RR 959 (1017)
Q Consensus 958 ~r 959 (1017)
..
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 43
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.96 E-value=2.3e-08 Score=98.93 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001755 257 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 336 (1017)
Q Consensus 257 A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~ 336 (1017)
-..+|++++++. |..+..++..+...|++++|...|++++ .++|.+..+|+.++.++.+.|++++|+..|++++.
T Consensus 12 ~~~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356789999854 4457788999999999999999999987 57999999999999999999999999999999999
Q ss_pred hhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 001755 337 IEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 393 (1017)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E 393 (1017)
..|++ ...+..++..+.. .|++++|++.|+++++..|++...|.......
T Consensus 87 l~p~~------~~a~~~lg~~l~~-~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASH------PEPVYQTGVCLKM-MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCC------cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99886 5688888888777 99999999999999999999999886665543
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.1e-08 Score=104.50 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=191.8
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHH
Q 001755 198 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 277 (1017)
Q Consensus 198 ~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l 277 (1017)
.+-+++..+....++++...|+...++..|++++..+|...+..-.|+.++...|+++...++-.+.+.+. .....-|+
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 34567777888888888888999999999999999999999888899999988999999888888888743 45666787
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHH
Q 001755 278 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 357 (1017)
Q Consensus 278 ~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~ 357 (1017)
-.+..+....++..|...-++++ .++|.+...++..+++++..++.++|...|+.|+.+.|.. ..+|.-+...
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I-~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r------L~~Y~GL~hs 377 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCI-DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR------LEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHh-ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh------HHHHHHHHHH
Confidence 77888878889999999999976 5799999999999999999999999999999999998765 4566555555
Q ss_pred HHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHH---HHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 001755 358 LHLVSRNAEKARQILVDSLDHVQLSKPLLEAL---IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCV 434 (1017)
Q Consensus 358 l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~---a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~ 434 (1017)
. ...|++.+|.-.-+.+++..|.+.....-+ +.|+. +.--+++++++|++|+..|+.-.. ...
T Consensus 378 Y-LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d----p~~rEKAKkf~ek~L~~~P~Y~~A---------V~~ 443 (564)
T KOG1174|consen 378 Y-LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD----PRMREKAKKFAEKSLKINPIYTPA---------VNL 443 (564)
T ss_pred H-HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC----chhHHHHHHHHHhhhccCCccHHH---------HHH
Confidence 3 348999999999999999999998755444 23332 223489999999999999886321 223
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 001755 435 FLEFLGLFGDAQLIKKAEDRHARLFLP 461 (1017)
Q Consensus 435 ~l~fe~~~Gd~~~~~~~~~r~~~~~~~ 461 (1017)
..++...-|..+++-++++++++-+++
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccc
Confidence 345555566677777777777777776
No 125
>smart00362 RRM_2 RNA recognition motif.
Probab=98.95 E-value=3.3e-09 Score=90.35 Aligned_cols=71 Identities=34% Similarity=0.564 Sum_probs=62.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 883 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 883 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
+|||+|||..++.++|+++|++||.|..+.+. ++. +.++|+|||+|.+.++++.|+.. ++..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~-~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIP-KDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999987653 333 67889999999999999999988 6899999998873
No 126
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.2e-08 Score=108.66 Aligned_cols=249 Identities=18% Similarity=0.119 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 285 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~ 285 (1017)
..--.+-.+.+.|+..+...+=.+.+...|..+--|+..+.|+...|++.+||.+|.+|..+. +.....|+.+|..+--
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~ 358 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAG 358 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhh
Confidence 444455555667777777777777788889888999999999999899999999999999754 8888999999999988
Q ss_pred cCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCH
Q 001755 286 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 365 (1017)
Q Consensus 286 ~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~ 365 (1017)
.++.|.|..+|.++. .+.|+...-.+-.+--+.+.++++-|...|..|+.+.|.+ +.++..++-..+. .+.+
T Consensus 359 e~EhdQAmaaY~tAa-rl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D------plv~~Elgvvay~-~~~y 430 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAA-RLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD------PLVLHELGVVAYT-YEEY 430 (611)
T ss_pred cchHHHHHHHHHHHH-HhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------chhhhhhhheeeh-Hhhh
Confidence 899999999999976 4666655555555656677899999999999999999886 5555566665555 8899
Q ss_pred HHHHHHHHHHhhhc----CCCH---HHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 001755 366 EKARQILVDSLDHV----QLSK---PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 438 (1017)
Q Consensus 366 e~Ar~i~~~al~~~----P~~~---~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~f 438 (1017)
.+|..+|+.+|... +... .+|.++.+.-..++.. +.+...|+++|...|.+... .. -+.|
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~---~eAI~~~q~aL~l~~k~~~~---------~a-sig~ 497 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY---EEAIDYYQKALLLSPKDAST---------HA-SIGY 497 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH---HHHHHHHHHHHHcCCCchhH---------HH-HHHH
Confidence 99999999999432 2221 2567777777776544 78899999999988886432 11 1222
Q ss_pred -HHhhCCHHHHHHHHHHHHHhcCCCCCchhhhhcchhhh
Q 001755 439 -LGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDF 476 (1017)
Q Consensus 439 -e~~~Gd~~~~~~~~~r~~~~~~~~~~~~~~kkr~~~~~ 476 (1017)
.-..|+++.+-..+.+++-+-|+.....+-.++--+++
T Consensus 498 iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 24468999999999999988888766666666555553
No 127
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=6.4e-10 Score=117.29 Aligned_cols=75 Identities=25% Similarity=0.330 Sum_probs=70.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
++||||.|.+.+.++.||..|..||+|+++++. -|..|++.||||||+|+-+|.++-|++. ||.+++||.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMS-WDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMS-WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecc-cccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 899999999999999999999999999998754 3788999999999999999999999998 89999999999963
No 128
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=6.2e-08 Score=105.80 Aligned_cols=239 Identities=15% Similarity=0.086 Sum_probs=188.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHH
Q 001755 211 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 290 (1017)
Q Consensus 211 l~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~ 290 (1017)
+.|+.--.++..|...-..||..+..++....+-+.....+|+++.|.+.|+.||. +...|.+.+++.+...+.+|+++
T Consensus 463 l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~-ndasc~ealfniglt~e~~~~ld 541 (840)
T KOG2003|consen 463 LRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN-NDASCTEALFNIGLTAEALGNLD 541 (840)
T ss_pred HHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc-CchHHHHHHHHhcccHHHhcCHH
Confidence 33433334667777777778877777777777777777778999999999999997 55778999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHH
Q 001755 291 GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ 370 (1017)
Q Consensus 291 ~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~ 370 (1017)
+|.++|-++. .+.-++.+++++.++++..+.+...|+++|-++....|++ +.++.+++.+.-+ .|+...|..
T Consensus 542 eald~f~klh-~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d------p~ilskl~dlydq-egdksqafq 613 (840)
T KOG2003|consen 542 EALDCFLKLH-AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND------PAILSKLADLYDQ-EGDKSQAFQ 613 (840)
T ss_pred HHHHHHHHHH-HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC------HHHHHHHHHHhhc-ccchhhhhh
Confidence 9999999965 3455679999999999999999999999999999999987 8899999999555 999999999
Q ss_pred HHHHHhhhcCCCHHH--HHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH-HHHHhhCCHHH
Q 001755 371 ILVDSLDHVQLSKPL--LEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL-EFLGLFGDAQL 447 (1017)
Q Consensus 371 i~~~al~~~P~~~~l--w~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l-~fe~~~Gd~~~ 447 (1017)
++-.....+|.+.+. |+.--.++..+ . +++...||++--..|+. .-|+..+ ...++-|+.+.
T Consensus 614 ~~ydsyryfp~nie~iewl~ayyidtqf--~---ekai~y~ekaaliqp~~----------~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 614 CHYDSYRYFPCNIETIEWLAAYYIDTQF--S---EKAINYFEKAALIQPNQ----------SKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred hhhhcccccCcchHHHHHHHHHHHhhHH--H---HHHHHHHHHHHhcCccH----------HHHHHHHHHHHHhcccHHH
Confidence 999999999999884 44444444443 2 66788899875555542 1476665 46788899999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhcch
Q 001755 448 IKKAEDRHARLFLPHRSTSELRKRHA 473 (1017)
Q Consensus 448 ~~~~~~r~~~~~~~~~~~~~~kkr~~ 473 (1017)
+..+|+..-+.||+.=-......|.+
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHh
Confidence 99999998888887543333344444
No 129
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.92 E-value=4e-09 Score=127.21 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=73.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
.++|||+|||..+++++|+++|+.||.|..+.| +++..+|.++|||||+|.+.++|..||.. +|..|+|+.|+|..+.
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~-~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL-IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 479999999999999999999999999999875 56778899999999999999999999987 8999999999999876
Q ss_pred C
Q 001755 960 P 960 (1017)
Q Consensus 960 ~ 960 (1017)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
No 130
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.91 E-value=3.1e-09 Score=125.56 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=65.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCccc-CeEEEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 956 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~-g~~l~Ve 956 (1017)
.+++|||+|||.++++++|+++|++||.|.+++| ++| .+|+++|||||+|.+.++|++||+. ++..|. |+.|.|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl-~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRL-MMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEE-EEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 3589999999999999999999999999999876 456 7899999999999999999999998 677774 6655443
No 131
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=4.1e-09 Score=117.25 Aligned_cols=84 Identities=32% Similarity=0.444 Sum_probs=74.5
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhC------C-Cccc
Q 001755 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS------P-IQLA 949 (1017)
Q Consensus 877 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~------~-~~i~ 949 (1017)
+...+.+|||+|||+++|+++|.++|++||+|+.+. ++.++.||+++|+|||.|.+..++..||.+- | +.|.
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~-iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI-IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEE-EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 345679999999999999999999999999999985 4789999999999999999999999999762 3 7899
Q ss_pred CeEEEEEeccCC
Q 001755 950 GRQVYIEERRPN 961 (1017)
Q Consensus 950 g~~l~Ve~~r~~ 961 (1017)
||.|+|..+-++
T Consensus 367 GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 367 GRLLKVTLAVTR 378 (678)
T ss_pred ccEEeeeeccch
Confidence 999999866543
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=9.9e-08 Score=99.56 Aligned_cols=125 Identities=13% Similarity=0.074 Sum_probs=110.6
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH-HHcCC--HHHH
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME-RRLGN--LEDA 327 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e-~r~g~--~e~A 327 (1017)
.++.+++...|++++... |++.+.|+.++.++...|++++|..+|++++ .+.|++..++..++.++ .+.|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQAL-QLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456788999999999965 9999999999999999999999999999987 57999999999999965 67777 5999
Q ss_pred HHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH
Q 001755 328 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 384 (1017)
Q Consensus 328 ~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~ 384 (1017)
+.+|+++++..+++ ...+..+|..+.+ .|++++|...|+++++..|.+..
T Consensus 130 ~~~l~~al~~dP~~------~~al~~LA~~~~~-~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDANE------VTALMLLASDAFM-QADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCCC------hhHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999987 5577777777677 99999999999999999887653
No 133
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.89 E-value=5.1e-09 Score=124.47 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=72.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
.++|||+|||..+++++|+++|++||.|..|.+ +++..+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~-~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQL-HRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 379999999999999999999999999999875 56777889999999999999999999986 8999999999999976
Q ss_pred C
Q 001755 960 P 960 (1017)
Q Consensus 960 ~ 960 (1017)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 134
>smart00360 RRM RNA recognition motif.
Probab=98.88 E-value=6.5e-09 Score=88.15 Aligned_cols=70 Identities=34% Similarity=0.559 Sum_probs=62.1
Q ss_pred EecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 886 VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 886 V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
|+|||..+++++|+++|++||.|..+.+. .++.++.++|+|||+|.+.+++..|+.. ++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~-~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLV-RDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEE-eCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999998763 4555688899999999999999999987 6899999998874
No 135
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=1.2e-06 Score=100.53 Aligned_cols=246 Identities=17% Similarity=-0.032 Sum_probs=159.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHH
Q 001755 203 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR---YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 279 (1017)
Q Consensus 203 ~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~---ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~ 279 (1017)
..+.+.-.+......|+++++..++++++...|.+...|.. +.......+..+.+..++..... ..|.....+..+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHH
Confidence 33455555666677899999999999999999999988873 22222223455555555544222 224455666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHH
Q 001755 280 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 359 (1017)
Q Consensus 280 a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~ 359 (1017)
+.++...|++++|...|++++ ++.|++..++..++.++...|++++|+.+|++++...+... ......+..++.++.
T Consensus 121 a~~~~~~G~~~~A~~~~~~al-~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~--~~~~~~~~~la~~~~ 197 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRAL-ELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS--MLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc--chhHHHHHHHHHHHH
Confidence 889999999999999999987 57999999999999999999999999999999999876421 111335567788866
Q ss_pred HhhCCHHHHHHHHHHHhhhcCCCHH-HHH-HH-HHH-H-hhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 001755 360 LVSRNAEKARQILVDSLDHVQLSKP-LLE-AL-IHF-E-SIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCV 434 (1017)
Q Consensus 360 ~~~g~~e~Ar~i~~~al~~~P~~~~-lw~-~~-a~~-E-~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~ 434 (1017)
. .|++++|+.+|++++...|.... ... .. ..+ . ...+........+.+........+. .... . ....
T Consensus 198 ~-~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~--~~~~---~--~~~~ 269 (355)
T cd05804 198 E-RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD--HGLA---F--NDLH 269 (355)
T ss_pred H-CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc--ccch---H--HHHH
Confidence 6 99999999999999876662221 111 11 111 1 1122222223444444433222111 1100 0 1112
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhcC
Q 001755 435 FLEFLGLFGDAQLIKKAEDRHARLFL 460 (1017)
Q Consensus 435 ~l~fe~~~Gd~~~~~~~~~r~~~~~~ 460 (1017)
........|+.+.+..+.++....-.
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 33445556778888888877665543
No 136
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=3.2e-07 Score=105.20 Aligned_cols=206 Identities=12% Similarity=-0.020 Sum_probs=163.5
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHH
Q 001755 200 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 276 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~ 276 (1017)
||+....|...+.++...|+.+.+...|.++....+.+ .+.++..+..+...|++++|..+++++++.+ |.+..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHH
Confidence 56677788888888888898988899999999888755 5567777888888999999999999999965 8887766
Q ss_pred HH---HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHH
Q 001755 277 LF---AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 353 (1017)
Q Consensus 277 l~---~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~ 353 (1017)
.. +.......+..+.+.+++... ...+|.....+..++.++...|++++|+..|+++++..+.+ ..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~ 153 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHA 153 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHH
Confidence 63 222222345566666666653 34578777788888899999999999999999999999876 456777
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhhcCCCH----HHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCC
Q 001755 354 YSRFLHLVSRNAEKARQILVDSLDHVQLSK----PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 417 (1017)
Q Consensus 354 ~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~----~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~ 417 (1017)
++..++. .|++++|+..+++++...|.+. ..|..++.+....|+. +.+..+|++++...+
T Consensus 154 la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~---~~A~~~~~~~~~~~~ 217 (355)
T cd05804 154 VAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY---EAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH---HHHHHHHHHHhcccc
Confidence 8888777 9999999999999999877443 3566788888888877 788999999875544
No 137
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.87 E-value=4e-09 Score=119.90 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=75.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEeccC
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 960 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r~ 960 (1017)
+.|||||+|+++++++|.++|+..|.|.++++ +.|+.||+++||||++|.+.+++..|++. ||.+++||+|+|+++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~-v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRL-VYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeee-cccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999999999999999999999999885 77999999999999999999999999998 79999999999999875
Q ss_pred CC
Q 001755 961 NT 962 (1017)
Q Consensus 961 ~~ 962 (1017)
..
T Consensus 98 ~~ 99 (435)
T KOG0108|consen 98 RK 99 (435)
T ss_pred cc
Confidence 43
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=3.4e-07 Score=94.43 Aligned_cols=173 Identities=16% Similarity=0.042 Sum_probs=148.3
Q ss_pred HHHHHHHH---HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 001755 206 NWHNYLDF---IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 282 (1017)
Q Consensus 206 ~W~~yl~~---e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ 282 (1017)
.|.-|=.. ....|..+-|..++.+....+|++..+-..++.+++..|+.++|.++|++.++ ..|.+.-++-.-..+
T Consensus 51 ~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~-ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 51 IWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLE-DDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhc-cCcchhHHHHHHHHH
Confidence 45444333 34567888899999999999999999999999999999999999999999998 448888888887888
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHh-
Q 001755 283 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV- 361 (1017)
Q Consensus 283 ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~- 361 (1017)
...+|.--+|++.+...+ +..+++.++|..+++++...|++++|.-+|+..+-..|-+ +.++.+||+.+|..
T Consensus 130 lka~GK~l~aIk~ln~YL-~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n------~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYL-DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN------PLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHcCCcHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHh
Confidence 888898889999998865 5688899999999999999999999999999999998876 77889999998873
Q ss_pred -hCCHHHHHHHHHHHhhhcCCCHHHH
Q 001755 362 -SRNAEKARQILVDSLDHVQLSKPLL 386 (1017)
Q Consensus 362 -~g~~e~Ar~i~~~al~~~P~~~~lw 386 (1017)
..+++-||+.|.++|+++|.+...|
T Consensus 203 g~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred hHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 2368899999999999999666544
No 139
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=2.2e-07 Score=100.00 Aligned_cols=174 Identities=14% Similarity=0.019 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHH--
Q 001755 235 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE-- 309 (1017)
Q Consensus 235 p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~---~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~-- 309 (1017)
....+.++..+..+...|+++.|...|++++..+ |.++ .+|+.++.++...|++++|+..|++++. ..|++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR-LHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCchH
Confidence 4567899999999999999999999999999865 6654 6789999999999999999999999874 5887665
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhcCCCccCcHHHHH--------------HHHHHHHHHhhCCHH
Q 001755 310 -AIIKHANMERRL--------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLY--------------AQYSRFLHLVSRNAE 366 (1017)
Q Consensus 310 -~~~~~a~~e~r~--------g~~e~A~~iye~al~~~~~~~~~~~~~~l~--------------~~~a~~l~~~~g~~e 366 (1017)
+|+..+.++... |++++|+..|++++...|..... ...+ ...+.+.++ .|+++
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~a~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~ 183 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA---PDAKKRMDYLRNRLAGKELYVARFYLK-RGAYV 183 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCChH
Confidence 677878777665 78999999999999999876321 1111 234566555 89999
Q ss_pred HHHHHHHHHhhhcCCCH---HHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCC
Q 001755 367 KARQILVDSLDHVQLSK---PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 417 (1017)
Q Consensus 367 ~Ar~i~~~al~~~P~~~---~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~ 417 (1017)
+|...|+++++.+|+++ .+|..++......++. +.+..+++.....+|
T Consensus 184 ~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~---~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 184 AAINRFETVVENYPDTPATEEALARLVEAYLKLGLK---DLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCC
Confidence 99999999999988754 6888999888888776 667777777665544
No 140
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=9.4e-09 Score=90.18 Aligned_cols=76 Identities=26% Similarity=0.339 Sum_probs=66.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
.++-|||+|||+++|.+++.++|.+||.|..++|- + +...+|-|||.|++..+|++|+.. +|..+.++.+.|-.-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG--~--~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIG--N--TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEec--C--ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 45889999999999999999999999999987652 2 223689999999999999999998 799999999999654
Q ss_pred c
Q 001755 959 R 959 (1017)
Q Consensus 959 r 959 (1017)
.
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 3
No 141
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=1.4e-08 Score=110.85 Aligned_cols=72 Identities=28% Similarity=0.456 Sum_probs=65.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
-.-|||+||+.++|++.|+++|++||.|..|.. + |-||||.|.+.++|.+|++. ||..|+|..|.|..++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk-~--------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKK-P--------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeec-c--------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 478999999999999999999999999998642 2 34999999999999999998 8999999999999887
Q ss_pred CC
Q 001755 960 PN 961 (1017)
Q Consensus 960 ~~ 961 (1017)
|.
T Consensus 330 P~ 331 (506)
T KOG0117|consen 330 PV 331 (506)
T ss_pred Ch
Confidence 64
No 142
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=1.2e-08 Score=111.22 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=69.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcc-cCeEEEEEe
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-AGRQVYIEE 957 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i-~g~~l~Ve~ 957 (1017)
.++-||||.||.++.|++|..+|++.|+|-++++ +.|+.+|.+||||||.|.+.+.|++||+. |+++| .|+.|.|..
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL-MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL-MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEE-eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4699999999999999999999999999999986 46888999999999999999999999998 78877 477777753
No 143
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.82 E-value=4.6e-07 Score=105.82 Aligned_cols=237 Identities=17% Similarity=0.130 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHhhhhHhhhhcc---CCcccCCCCcchH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------CC
Q 001755 169 EEMYKKAKEFDSKIIGFETAIRR---PYFHVKPLSVTEL-ENWHNYLDFIERDGDFNKVVKLYERCLIAC--------AN 236 (1017)
Q Consensus 169 ~~~y~~~~~~~~~~~~fE~~I~r---~y~~~~~l~~~~l-~~W~~yl~~e~~~g~~~~a~~lyeraL~~~--------p~ 236 (1017)
..+|....++.+....|+.+|.. .+. ++...+ .+-..++.++...+.+.+|+.+|++||... |.
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G----~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSG----LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccC----ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 36777888888888888888743 111 222223 334458889999999999999999999764 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-------
Q 001755 237 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVK----R---LPEIHLFAARFKEQNGDIDGARAAYQLVHTE------- 302 (1017)
Q Consensus 237 ~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p----~---~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~------- 302 (1017)
...+..+++..+.+.|++++|+.++++|+++... . -...+...+.+++..+++++|..+|++++..
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 5568899999999999999999999999997633 2 3445666788889999999999999877532
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCc--cCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc-
Q 001755 303 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV- 379 (1017)
Q Consensus 303 l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~--~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~- 379 (1017)
.++....+..+++.++...|++++|+++|++|+........ .......+.++|....+ .+++.+|-.+|.+++.+.
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~-~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE-LKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH-hcccchHHHHHHHHHHHHH
Confidence 23445667899999999999999999999999998753221 11123344556666555 888888888888877642
Q ss_pred ------CCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHh
Q 001755 380 ------QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 413 (1017)
Q Consensus 380 ------P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al 413 (1017)
|+....+.+++.+...+|+. +.+.++.++++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~---e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNY---EAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccH---HHHHHHHHHHH
Confidence 33334788888888888877 55555555554
No 144
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=3.2e-07 Score=95.68 Aligned_cols=176 Identities=14% Similarity=0.155 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001755 223 VVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 302 (1017)
Q Consensus 223 a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~ 302 (1017)
+...+-+.....|.+.++ .+++..+...|+-+....+..+++..+ +++..++..++....+.|++..|...+.++. .
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c
Confidence 444455555667777777 777777777777777777777766433 6667777677777777888888888888865 4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCC
Q 001755 303 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 382 (1017)
Q Consensus 303 l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~ 382 (1017)
+.|++.++|..++-.+.++|+++.|+.-|.+++++.+++ +.++.+++.+++. .||++.|+.++..+...-+.+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLL-RGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCc
Confidence 677788888888888888888888888888888887776 5566677776665 788888888888887777767
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHH
Q 001755 383 KPLLEALIHFESIQSSPKQIDFLEQLVDK 411 (1017)
Q Consensus 383 ~~lw~~~a~~E~~~~~~~~~~~ar~l~e~ 411 (1017)
..+-.+++..-..+++. .+++++...
T Consensus 202 ~~v~~NLAl~~~~~g~~---~~A~~i~~~ 227 (257)
T COG5010 202 SRVRQNLALVVGLQGDF---REAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHhhcCCh---HHHHhhccc
Confidence 77777777777766665 555555443
No 145
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.81 E-value=1.3e-08 Score=111.76 Aligned_cols=78 Identities=32% Similarity=0.542 Sum_probs=72.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
.++|||+|||.++++++|+++|++||.|..+.+ ..++.+|+++|||||+|.+.+++..|+.. ++..|.|+.|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~-~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRL-VRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEe-eeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999999999998875 45667899999999999999999999998 6899999999999854
No 146
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.80 E-value=4.6e-05 Score=89.74 Aligned_cols=225 Identities=15% Similarity=0.059 Sum_probs=175.3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 220 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 299 (1017)
Q Consensus 220 ~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~ 299 (1017)
..++++.+|+|+...|+++..-+.++..+....+++.|....++++.+....++..|..+|.+.-..+++.+|..+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45688899999999999998888888888888889999999999998766778889999888888888888877766644
Q ss_pred hhhcCCC-------------------------------------------------------------------------
Q 001755 300 HTETSPG------------------------------------------------------------------------- 306 (1017)
Q Consensus 300 ~~~l~P~------------------------------------------------------------------------- 306 (1017)
+.+ .|+
T Consensus 540 l~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 540 LEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 322 111
Q ss_pred ------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHH
Q 001755 307 ------------------------------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 356 (1017)
Q Consensus 307 ------------------------------~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~ 356 (1017)
...+|...+....+.++.++|+.++.++-..++-. ...|...++
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~------~~~~~~~G~ 692 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS------ASVYYLRGL 692 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh------HHHHHHhhH
Confidence 12245555666666677777777777776665432 334444455
Q ss_pred HHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH
Q 001755 357 FLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL 436 (1017)
Q Consensus 357 ~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l 436 (1017)
.+.. .|..++|...|..++..+|++...-..++.+....|+. ++...+.++..++...|.+++ .|+...
T Consensus 693 ~~~~-~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~-~la~~~~~L~dalr~dp~n~e---------aW~~LG 761 (799)
T KOG4162|consen 693 LLEV-KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP-RLAEKRSLLSDALRLDPLNHE---------AWYYLG 761 (799)
T ss_pred HHHH-HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc-chHHHHHHHHHHHhhCCCCHH---------HHHHHH
Confidence 5444 89999999999999999999999999999998888855 556667799999999999865 688889
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 437 EFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 437 ~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
+.....||.+.+-.++.-+.++-.+.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999999999999999988876554
No 147
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.8e-06 Score=90.48 Aligned_cols=245 Identities=12% Similarity=0.066 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001755 169 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 248 (1017)
Q Consensus 169 ~~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l 248 (1017)
..+|+...+..+.|.-....+.+|-.. ....+-+-..++.-+...|-++||..+|...+...-.-......+..++
T Consensus 76 GnLfRsRGEvDRAIRiHQ~L~~spdlT----~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IY 151 (389)
T COG2956 76 GNLFRSRGEVDRAIRIHQTLLESPDLT----FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIY 151 (389)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 356777777777776555555553322 2334456677777777889999999999988776555677888888999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCC--ChHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 001755 249 EASGSMDLAHNALARATHVFVKR--LPEI---HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 323 (1017)
Q Consensus 249 ~~~g~~e~A~~v~~rAl~~~~p~--~~~i---~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~ 323 (1017)
....+.++|.++-++...+- +. ..+| +-.+|.-+....++++|+.++.+++.. +|++..+-+.+++++...|+
T Consensus 152 Q~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa-~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 152 QATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA-DKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-CccceehhhhhhHHHHhccc
Confidence 98899999999999888743 43 2222 222344445557999999999999864 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHH
Q 001755 324 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQID 403 (1017)
Q Consensus 324 ~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~ 403 (1017)
++.|.+.|+++++..+.. ++++...+... |..+|+.++.+..+.++++..+. .++-+.++++...+... +
T Consensus 230 y~~AV~~~e~v~eQn~~y-----l~evl~~L~~~-Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~---~ 299 (389)
T COG2956 230 YQKAVEALERVLEQNPEY-----LSEVLEMLYEC-YAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGI---D 299 (389)
T ss_pred hHHHHHHHHHHHHhChHH-----HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhCh---H
Confidence 999999999999998764 24444444444 44599999999999999998877 56666777776666544 5
Q ss_pred HHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHH
Q 001755 404 FLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL 439 (1017)
Q Consensus 404 ~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe 439 (1017)
.+...+-+-|...|+- ....+++++.
T Consensus 300 ~Aq~~l~~Ql~r~Pt~----------~gf~rl~~~~ 325 (389)
T COG2956 300 AAQAYLTRQLRRKPTM----------RGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHhhCCcH----------HHHHHHHHhh
Confidence 6777777777776652 2455666664
No 148
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=5.1e-06 Score=97.56 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=165.6
Q ss_pred hhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001755 182 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASGSMDLAHNA 260 (1017)
Q Consensus 182 ~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~-~p~~~~lW~~ya~~l~~~g~~e~A~~v 260 (1017)
+..+|+++.. ++++...-..+.-.+...++++.|.....++|.. ...+...|.-++.++...+++.+|..+
T Consensus 464 lqale~av~~--------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 464 LQALEEAVQF--------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHhc--------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4567777653 3333344444444445566777777777777777 445567777777777766666666666
Q ss_pred HHHHHHhhcCC---------------------------------------------------------------------
Q 001755 261 LARATHVFVKR--------------------------------------------------------------------- 271 (1017)
Q Consensus 261 ~~rAl~~~~p~--------------------------------------------------------------------- 271 (1017)
.+-+++.+..+
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 65555543220
Q ss_pred ---------------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 001755 272 ---------------------------------LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 318 (1017)
Q Consensus 272 ---------------------------------~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e 318 (1017)
...+|+..+......++.++|+-++..+. .++|.....|+..+.++
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~-~~~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS-KIDPLSASVYYLRGLLL 694 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-hcchhhHHHHHHhhHHH
Confidence 01356666777777788888888888865 46888899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHH--HHHHHhhhcCCCHHHHHHHHHHHhhC
Q 001755 319 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ--ILVDSLDHVQLSKPLLEALIHFESIQ 396 (1017)
Q Consensus 319 ~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~--i~~~al~~~P~~~~lw~~~a~~E~~~ 396 (1017)
...|+.++|.+.|..|+...|+. ...+..+|.++.+ .|+..-|.+ ++..+++.+|.+.+.|..+.......
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~h------v~s~~Ala~~lle-~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDH------VPSMTALAELLLE-LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHH-hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999987 4577788888777 776655555 99999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhhcCCCCC
Q 001755 397 SSPKQIDFLEQLVDKFLMSNSDSP 420 (1017)
Q Consensus 397 ~~~~~~~~ar~l~e~al~~~~~~~ 420 (1017)
|+. +.+-.||..+++....+|
T Consensus 768 Gd~---~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 768 GDS---KQAAECFQAALQLEESNP 788 (799)
T ss_pred cch---HHHHHHHHHHHhhccCCC
Confidence 887 678999999999877776
No 149
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1.2e-06 Score=93.10 Aligned_cols=234 Identities=14% Similarity=0.088 Sum_probs=145.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHH
Q 001755 211 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQ 285 (1017)
Q Consensus 211 l~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~-----~~~i~l~~a~~ee~ 285 (1017)
++|+. ..+.++|+.+|-..+..+|...++.+.++.++-+.|..|.|..+-+-.++ .|+ ...+...+|+=+..
T Consensus 43 lNfLL-s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~--spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 43 LNFLL-SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE--SPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HHHHh-hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHH
Confidence 44544 34567777777777777777777777777777777777777777655544 243 22344455666667
Q ss_pred cCCHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCC
Q 001755 286 NGDIDGARAAYQLVHTETSPGL-LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 364 (1017)
Q Consensus 286 ~g~~~~Ar~iy~~~~~~l~P~~-~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~ 364 (1017)
.|-+|.|..+|..+.. .|.. ..+...+.+++....+.++|+.+-++..+..+.... .....++..+|.-... ..+
T Consensus 120 aGl~DRAE~~f~~L~d--e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~-~eIAqfyCELAq~~~~-~~~ 195 (389)
T COG2956 120 AGLLDRAEDIFNQLVD--EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR-VEIAQFYCELAQQALA-SSD 195 (389)
T ss_pred hhhhhHHHHHHHHHhc--chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch-hHHHHHHHHHHHHHhh-hhh
Confidence 7777777777777542 2332 335666677777777777777777777766654421 1224444445544333 677
Q ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCC
Q 001755 365 AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGD 444 (1017)
Q Consensus 365 ~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd 444 (1017)
.++|+.++.+|++.+|.+..+-+.+.+++...|+. +.+.+.+++++..+++.- -++.....+-....|+
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y---~~AV~~~e~v~eQn~~yl--------~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDY---QKAVEALERVLEQNPEYL--------SEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccch---HHHHHHHHHHHHhChHHH--------HHHHHHHHHHHHHhCC
Confidence 77777777777777777777777777777777666 556666677777665531 1122333333444555
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 001755 445 AQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 445 ~~~~~~~~~r~~~~~~~~ 462 (1017)
+++...-+.+..+.++..
T Consensus 265 ~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 265 PAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHHccCCc
Confidence 555555555555555443
No 150
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=2.8e-07 Score=96.08 Aligned_cols=168 Identities=19% Similarity=0.127 Sum_probs=147.9
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
.+|.++.+ .++..-+...|+-+....+....++..|.+.++...+++.....|++..|..+|+||+.+. |++.+.|..
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 35677778 8888878888888888888888899999999999999999999999999999999999854 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHH
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 358 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l 358 (1017)
++-.+.+.|+.+.||..|.+++ ++.|+...+..+++..+.-.|+++.|+.++.++....+.+ ..+..+++...
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl-~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad------~~v~~NLAl~~ 212 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQAL-ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD------SRVRQNLALVV 212 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHH-HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc------hHHHHHHHHHH
Confidence 9999999999999999999987 6899999999999999999999999999999999887765 45667777765
Q ss_pred HHhhCCHHHHHHHHHHHh
Q 001755 359 HLVSRNAEKARQILVDSL 376 (1017)
Q Consensus 359 ~~~~g~~e~Ar~i~~~al 376 (1017)
-. .|++++|+++-..-+
T Consensus 213 ~~-~g~~~~A~~i~~~e~ 229 (257)
T COG5010 213 GL-QGDFREAEDIAVQEL 229 (257)
T ss_pred hh-cCChHHHHhhccccc
Confidence 55 999999998866544
No 151
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.78 E-value=7.8e-09 Score=100.25 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=73.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
+..+||||||+..++++.|.++|-+.|+|.+++| -+++.+...+|||||+|.++++++-||+- |.+.|-||+|+|..+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i-PkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI-PKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeec-chhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4589999999999999999999999999999876 46888888999999999999999999998 799999999999877
Q ss_pred c
Q 001755 959 R 959 (1017)
Q Consensus 959 r 959 (1017)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 152
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.77 E-value=2.1e-07 Score=90.76 Aligned_cols=115 Identities=17% Similarity=0.043 Sum_probs=105.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 001755 225 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 304 (1017)
Q Consensus 225 ~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~ 304 (1017)
.+|++++...|.+...-+.++..+...|++++|...|++++... |.++.+|..++.++...|++++|..+|++++ ..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA-ALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC
Confidence 36899999999999999999999999999999999999999865 8899999999999999999999999999976 468
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 305 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 305 P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
|.+...++.++.++...|++++|...|+++++..+++
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999998876
No 153
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.76 E-value=2e-08 Score=119.37 Aligned_cols=72 Identities=28% Similarity=0.420 Sum_probs=64.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCcccCeEEEEEe
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIEE 957 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~---~~~~i~g~~l~Ve~ 957 (1017)
++.|||+|||+++++++|+++|++||.|.+|.| ++ .||||||+|++.++|++||.. ++..|+|+.|+|.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i-~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMM-LP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-EC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 589999999999999999999999999999865 32 358999999999999999974 68999999999988
Q ss_pred cc
Q 001755 958 RR 959 (1017)
Q Consensus 958 ~r 959 (1017)
+.
T Consensus 75 s~ 76 (481)
T TIGR01649 75 ST 76 (481)
T ss_pred cC
Confidence 64
No 154
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.73 E-value=6.2e-08 Score=82.90 Aligned_cols=72 Identities=33% Similarity=0.631 Sum_probs=62.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 883 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 883 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
+|+|+|||..+++++|+++|+.||.|..+.+. .++. +.++|+|||+|.+.+++..|+.. ++..++|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~-~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIV-RDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEe-eCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 48999999999999999999999999987653 3332 36789999999999999999988 6888999999886
No 155
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.73 E-value=2.7e-07 Score=89.98 Aligned_cols=119 Identities=19% Similarity=0.098 Sum_probs=105.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 259 NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 338 (1017)
Q Consensus 259 ~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~ 338 (1017)
..|++++... |.+....+.++..+...|++++|...|++++ .++|.+..+|..++.++.+.|++++|..+|++++...
T Consensus 4 ~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLA-AYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4688899854 8888888999999999999999999999976 5699999999999999999999999999999999998
Q ss_pred cCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001755 339 KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 386 (1017)
Q Consensus 339 ~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw 386 (1017)
+.. +..+..++.++.. .|++++|...|+++++.+|++...+
T Consensus 82 p~~------~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PDD------PRPYFHAAECLLA-LGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCC------hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccccchHH
Confidence 775 5677778887666 9999999999999999999887644
No 156
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=3.3e-08 Score=110.22 Aligned_cols=80 Identities=23% Similarity=0.357 Sum_probs=71.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
..+|.|+|||+.+...+|+.+|+.||.|..|.|. .+..|+.+|||||.|.+..+|..||+. |+.+|+||+|-|+|+-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP--~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIP--RKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcc--cCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 5899999999999999999999999999997653 455567779999999999999999998 8999999999999986
Q ss_pred CCC
Q 001755 960 PNT 962 (1017)
Q Consensus 960 ~~~ 962 (1017)
++.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 543
No 157
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=4.7e-08 Score=106.24 Aligned_cols=82 Identities=18% Similarity=0.378 Sum_probs=71.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCcccC--eE
Q 001755 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAG--RQ 952 (1017)
Q Consensus 877 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~--~~~~i~g--~~ 952 (1017)
.|.+.-++|||-||..++|.||+++|++||.|..|.| ++|+.||.++|||||.|.+.+++.+|+.+ |-+.|-| ..
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl-~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINL-IKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEe-ecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 3456789999999999999999999999999999975 78999999999999999999999999988 5666755 35
Q ss_pred EEEEecc
Q 001755 953 VYIEERR 959 (1017)
Q Consensus 953 l~Ve~~r 959 (1017)
|.|.++.
T Consensus 109 vqvk~Ad 115 (510)
T KOG0144|consen 109 VQVKYAD 115 (510)
T ss_pred eeecccc
Confidence 7776654
No 158
>smart00361 RRM_1 RNA recognition motif.
Probab=98.71 E-value=4.7e-08 Score=83.73 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=53.1
Q ss_pred HHHHHHHHh----cCCCeeEeeEEeecCCC--cccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 895 AFEIEEEFQ----NFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 895 ~~~L~~~F~----~~G~i~~v~i~~~~~~~--g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
+++|+++|+ +||.|.++...+.++.+ ++++|||||+|.+.++|.+|+.. +|..++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 99999998522445555 88999999999999999999998 8999999999863
No 159
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=1.1e-08 Score=111.07 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=71.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CcccCe--EEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGR--QVYI 955 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~-~~i~g~--~l~V 955 (1017)
+.++||||-|+..+||.+++++|++||.|++|.| +|+. .|.+||||||.|.+.+.|..||+. || ..|.|. +|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~i-lrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYI-LRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhh-eecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 4589999999999999999999999999999986 4554 378999999999999999999998 54 567665 5999
Q ss_pred EeccCCCCC
Q 001755 956 EERRPNTGS 964 (1017)
Q Consensus 956 e~~r~~~~~ 964 (1017)
.++.+.+.+
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999876654
No 160
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.68 E-value=6.3e-08 Score=115.19 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 879 GEVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 879 ~~~~~l~V~nl~~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
.++++|||+||++ .+|+++|+++|+.||.|.+|+|+. + .+|||||+|.+.++|..||.. +|..|.|+.|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~-~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK-N-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 3568999999997 699999999999999999987643 3 258999999999999999986 8999999999999
Q ss_pred eccCC
Q 001755 957 ERRPN 961 (1017)
Q Consensus 957 ~~r~~ 961 (1017)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 87653
No 161
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.68 E-value=3.2e-08 Score=96.01 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=72.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
+.+||||||.+.+++..|.+.|+.||.|...--.+++..||.++|||||.|++.+...+||.+ ||..++.++|+|+.+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 479999999999999999999999999876433467888999999999999999999999998 7999999999999887
Q ss_pred CC
Q 001755 960 PN 961 (1017)
Q Consensus 960 ~~ 961 (1017)
.+
T Consensus 176 k~ 177 (203)
T KOG0131|consen 176 KK 177 (203)
T ss_pred ec
Confidence 54
No 162
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.67 E-value=2e-05 Score=84.44 Aligned_cols=196 Identities=13% Similarity=0.053 Sum_probs=161.9
Q ss_pred HhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 185 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 264 (1017)
Q Consensus 185 fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rA 264 (1017)
|-+++. .|.....+||+++.+..+.+..+...|.-..++.-++|.|..-|...-.-+..+..+++.|.++.|..-|+..
T Consensus 54 ~sDALt-~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~v 132 (504)
T KOG0624|consen 54 LSDALT-HYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQV 132 (504)
T ss_pred HHHHHH-HHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHH
Confidence 555554 3555667899999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC---ChHHHHHHHHHH------------HHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001755 265 THVFVKR---LPEIHLFAARFK------------EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 329 (1017)
Q Consensus 265 l~~~~p~---~~~i~l~~a~~e------------e~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~ 329 (1017)
+. +.|+ ..+....++.+. ...|+...|+.....++ ++.|=...++..++.++...|+...|+.
T Consensus 133 l~-~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll-Ei~~Wda~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 133 LQ-HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL-EIQPWDASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred Hh-cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH-hcCcchhHHHHHHHHHHHhcCcHHHHHH
Confidence 97 4463 223333332222 23478888999999976 5789889999999999999999999999
Q ss_pred HHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 001755 330 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALI 390 (1017)
Q Consensus 330 iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a 390 (1017)
-++.+-++..++ -..+...+.++|. .|+.+.+....+.+|+.+|+...-|-.|-
T Consensus 211 Dlk~askLs~Dn------Te~~ykis~L~Y~-vgd~~~sL~~iRECLKldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 211 DLKQASKLSQDN------TEGHYKISQLLYT-VGDAENSLKEIRECLKLDPDHKLCFPFYK 264 (504)
T ss_pred HHHHHHhccccc------hHHHHHHHHHHHh-hhhHHHHHHHHHHHHccCcchhhHHHHHH
Confidence 999998887766 4577788899998 99999999999999999999987444333
No 163
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=1e-05 Score=95.76 Aligned_cols=374 Identities=12% Similarity=0.064 Sum_probs=217.7
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHc---ccHHHHHHHHHHHHhcc-hhhHHHHHHHHH-H
Q 001755 24 YYLCPNNFFFLLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ---QEWSRVAMIYTRILENP-IQQLDRYFSSFK-E 98 (1017)
Q Consensus 24 ~~~~~~~~~~~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~---~~~~~~~~iy~R~l~~P-~~~~~~~~~~f~-~ 98 (1017)
+.+|=++ ++..|. .+..+.++ +..+|..|+.=+... .+...+..+|.+.|.-- ...+|.++-.|. .
T Consensus 125 k~~dl~k---l~~ar~---~~~~~~pl---~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~~y~~~ 195 (881)
T KOG0128|consen 125 KLGDLEK---LRQARL---EMSEIAPL---PPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVVNYLVG 195 (881)
T ss_pred HhcchHH---HHHHHH---HHHHhcCC---ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHHHHHHh
Confidence 4455455 444444 44455666 677999988877754 45567888888876642 113343333332 2
Q ss_pred HhccCCCcccCCHHHHHHHHHHHhhcCCccccccccccccCCCcccccCCCcccCCcch-HHHHHHHHHHHHHHHHHHHH
Q 001755 99 FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTE-AEELEKYIAVREEMYKKAKE 177 (1017)
Q Consensus 99 ~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~y~~~~~ 177 (1017)
+.+...+ .++++.-| .|+..++...+ ...|+ ...++-|+.. ...|-.+.+
T Consensus 196 ~~~~~~~-----~~d~k~~R-~vf~ral~s~g----------------------~~~t~G~~~we~~~E~-e~~~l~n~~ 246 (881)
T KOG0128|consen 196 FGNVAKK-----SEDYKKER-SVFERALRSLG----------------------SHITEGAAIWEMYREF-EVTYLCNVE 246 (881)
T ss_pred ccccccc-----cccchhhh-HHHHHHHhhhh----------------------hhhcccHHHHHHHHHH-HHHHHHhHH
Confidence 3332111 12222112 34444443322 00111 1122222221 223444444
Q ss_pred HHHhhhhHhhhhccCCcccCCCCcchHHHHH--HHHHHHHHc-----CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001755 178 FDSKIIGFETAIRRPYFHVKPLSVTELENWH--NYLDFIERD-----GDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 250 (1017)
Q Consensus 178 ~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~--~yl~~e~~~-----g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~ 250 (1017)
..+-+..|+..++-++++-. --.++..|+ .+.+-+... .+....+..|++.+...+.-...|+.|+.++..
T Consensus 247 ~~qv~a~~~~el~~~~D~~~--~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~ 324 (881)
T KOG0128|consen 247 QRQVIALFVRELKQPLDEDT--RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKK 324 (881)
T ss_pred HHHHHHHHHHHHhccchhhh--hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 44445567777776644432 223344444 333333221 133456677899999999989999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-CHHHHH
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAF 328 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e-e~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g-~~e~A~ 328 (1017)
.|+.-....+++|++.-. +.+...|+.++.+. ..++-.+.+..++-++. ..+|-...+|-++.-.+.|.+ ......
T Consensus 325 ~G~p~ri~l~~eR~~~E~-~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~-R~cp~tgdL~~rallAleR~re~~~vI~ 402 (881)
T KOG0128|consen 325 SGDPVRIQLIEERAVAEM-VLDRALWIGYGVYLDTELKVPQRGVSVHPRAV-RSCPWTGDLWKRALLALERNREEITVIV 402 (881)
T ss_pred cCCchHHHHHHHHHHHhc-cccHHHHhhhhhhcccccccccccccccchhh-cCCchHHHHHHHHHHHHHhcCcchhhHH
Confidence 999999999999999754 66799999987766 34455566778888875 458888888888775455544 344555
Q ss_pred HHHHHHHHhhcCCCccCcHHHHHHHHHHHHHH------------hhCCHHHHHHHHHHHhhh-cCCCHHHHHHHHHHHhh
Q 001755 329 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL------------VSRNAEKARQILVDSLDH-VQLSKPLLEALIHFESI 395 (1017)
Q Consensus 329 ~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~------------~~g~~e~Ar~i~~~al~~-~P~~~~lw~~~a~~E~~ 395 (1017)
..+++++...- .++..|..+... ....+..|...|...... .-....+...++.+|..
T Consensus 403 ~~l~~~ls~~~---------~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~s 473 (881)
T KOG0128|consen 403 QNLEKDLSMTV---------ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEAS 473 (881)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 55666665421 122222222111 022334444444444433 23334688899999988
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 001755 396 QSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREE-LSCVFLEFLGLFGDAQLIKKAEDRHARLF 459 (1017)
Q Consensus 396 ~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~-l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~ 459 (1017)
+... ++.+|.+-...+.... .++. .|..|+..+..||+...++++++++....
T Consensus 474 l~~n--md~~R~iWn~imty~~---------~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 474 LLKN--MDKAREIWNFIMTYGG---------GSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred Hhhc--hhhhhHhhhccccCCc---------chHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 7533 5778877766544321 2344 78889999999999999999776665444
No 164
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.65 E-value=8.9e-08 Score=100.88 Aligned_cols=88 Identities=25% Similarity=0.316 Sum_probs=78.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEec
Q 001755 879 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 958 (1017)
Q Consensus 879 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~ 958 (1017)
.+...+||||+.+.++.++++.+|+.||.|..++| ..++.+|++|||+||+|.+.+.+..+|..++..|.|+.+.|...
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti-~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTV-PKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceee-eccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 35589999999999999999999999999998876 45777788999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 001755 959 RPNTGSTSR 967 (1017)
Q Consensus 959 r~~~~~~~r 967 (1017)
+.+..+.++
T Consensus 178 r~~~pg~~~ 186 (231)
T KOG4209|consen 178 RTNVPGMGR 186 (231)
T ss_pred eeecCCcCC
Confidence 887554443
No 165
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4e-08 Score=103.87 Aligned_cols=79 Identities=25% Similarity=0.421 Sum_probs=73.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
+.+-|||..|++-+++++|.-+|+.||.|++|.| +++++||.+-.||||+|++.+++++|.=. .++.|++++|.|++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceV-IRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEV-IRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeE-EecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4579999999999999999999999999999987 79999999999999999999999999865 689999999999876
Q ss_pred c
Q 001755 959 R 959 (1017)
Q Consensus 959 r 959 (1017)
.
T Consensus 317 Q 317 (479)
T KOG0415|consen 317 Q 317 (479)
T ss_pred h
Confidence 4
No 166
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=2.1e-06 Score=96.50 Aligned_cols=137 Identities=11% Similarity=-0.020 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 001755 235 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 314 (1017)
Q Consensus 235 p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~ 314 (1017)
+.....|+-.+.-....|.+++|+..++..+... |+++.+|...+.++...|+.++|.+.|++++ .+.|+..-+|+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKAL-ALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCccHHHHHH
Confidence 4555666666655555666666666666555533 5666666666666666666666666666654 3466666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcC
Q 001755 315 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 380 (1017)
Q Consensus 315 a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P 380 (1017)
++.+.+.|+..+|+.++.+.+...|++ +..|..+|+-+.. +|+..+|...+-+.+....
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~d------p~~w~~LAqay~~-~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPED------PNGWDLLAQAYAE-LGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCC------chHHHHHHHHHHH-hCchHHHHHHHHHHHHhCC
Confidence 666666666666666666666665554 4455555555444 5666555555555554443
No 167
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.4e-06 Score=99.62 Aligned_cols=246 Identities=12% Similarity=-0.002 Sum_probs=187.5
Q ss_pred HHHHhhhhHhhhh--ccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 001755 177 EFDSKIIGFETAI--RRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 254 (1017)
Q Consensus 177 ~~~~~~~~fE~~I--~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~ 254 (1017)
..++.+..-|..| +-.|.+...+.| .-..=..+++.+.+.|-...|+.+||| .++|-..+.|+...|+.
T Consensus 370 ~lv~~iq~~e~~v~nRlsy~ya~~lpp-~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~ 440 (777)
T KOG1128|consen 370 FLVKAIQMKEYSVLNRLSYIYAPHLPP-IWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQH 440 (777)
T ss_pred HHHHHHhhccHhHHhcccccccCCCCC-cchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhccc
Confidence 3344444444444 445666555554 112224567777888999999999988 47888889999999999
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 255 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 334 (1017)
Q Consensus 255 e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~a 334 (1017)
..|..+..+-++ . +.++.+|-.++++.....=+++|-++.+.. +..+.+.++....+.++++++...|++.
T Consensus 441 ~kaeei~~q~le-k-~~d~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~s 511 (777)
T KOG1128|consen 441 GKAEEINRQELE-K-DPDPRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERS 511 (777)
T ss_pred chHHHHHHHHhc-C-CCcchhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHH
Confidence 999999988887 3 677888888887776555556666655553 2345667777777889999999999999
Q ss_pred HHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhh
Q 001755 335 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 414 (1017)
Q Consensus 335 l~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~ 414 (1017)
++..+-. ...|..++-.-.+ ++++..|.+.|.+++...|++...|+++.......+.. .++..++.+|++
T Consensus 512 l~~nplq------~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k---~ra~~~l~EAlK 581 (777)
T KOG1128|consen 512 LEINPLQ------LGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK---KRAFRKLKEALK 581 (777)
T ss_pred hhcCccc------hhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh---HHHHHHHHHHhh
Confidence 9998875 4566666666556 99999999999999999999999999999988887655 678999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 001755 415 SNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 459 (1017)
Q Consensus 415 ~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~ 459 (1017)
.+-++.. +|.-|+-...+.|..+++.+++.+....-
T Consensus 582 cn~~~w~---------iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 582 CNYQHWQ---------IWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred cCCCCCe---------eeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8744432 67777778899999999999998877554
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.62 E-value=1.2e-06 Score=85.86 Aligned_cols=102 Identities=21% Similarity=0.166 Sum_probs=89.7
Q ss_pred CC-cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHH
Q 001755 199 LS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 277 (1017)
Q Consensus 199 l~-~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l 277 (1017)
++ +..++.-..|+-...+.|+++.|..+|+-.+..+|.+...|+.++.++...|++++|...|.+|+.+. |+++..+.
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~ 107 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPW 107 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 45 56677888888888889999999999999999999999999999999999999999999999999855 88999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh
Q 001755 278 FAARFKEQNGDIDGARAAYQLVHT 301 (1017)
Q Consensus 278 ~~a~~ee~~g~~~~Ar~iy~~~~~ 301 (1017)
+.|..+...|+++.|++.|+.++.
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 169
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=4.3e-07 Score=105.72 Aligned_cols=191 Identities=13% Similarity=0.056 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001755 204 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 283 (1017)
Q Consensus 204 l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e 283 (1017)
+.+|...+.++...|+..+|..+..+-++ .+..+-+|-.++++.... .+|++|.++....+..++..++...
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~sarA~r~~~~~~ 495 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP-------SLYEKAWELSNYISARAQRSLALLI 495 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh-------HHHHHHHHHhhhhhHHHHHhhcccc
Confidence 57999999999999999999888877777 666677777777766643 4677777766455667778888888
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhC
Q 001755 284 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 363 (1017)
Q Consensus 284 e~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g 363 (1017)
.+.+++.++.+.|++.+ +++|.....|+.++.+..+++++..|...|.+++...|++ ..-|.+++....+ .+
T Consensus 496 ~~~~~fs~~~~hle~sl-~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~------~eaWnNls~ayi~-~~ 567 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSL-EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN------AEAWNNLSTAYIR-LK 567 (777)
T ss_pred ccchhHHHHHHHHHHHh-hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc------hhhhhhhhHHHHH-Hh
Confidence 88899999999999987 5799999999999999999999999999999999999987 5677787777666 89
Q ss_pred CHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHh
Q 001755 364 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 413 (1017)
Q Consensus 364 ~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al 413 (1017)
+..+|+..+.+|++.+-++..+|.+|+.+-...+.- +.+.+.+.+.+
T Consensus 568 ~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~---eda~~A~~rll 614 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF---EDAIKAYHRLL 614 (777)
T ss_pred hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH---HHHHHHHHHHH
Confidence 999999999999999988888999999998888766 44444444433
No 170
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.61 E-value=3.5e-08 Score=110.93 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=69.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
..+||||||.+++++++|+.+|+.||.|..|.+ .+|..||.+||||||+|.+.+++++|++. ||++|-|+.|+|....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l-~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQL-TKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeee-ccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 345999999999999999999999999999765 45666999999999999999999999877 8999999999986543
No 171
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=1.3e-07 Score=100.63 Aligned_cols=76 Identities=22% Similarity=0.430 Sum_probs=67.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCcccCeEEEE
Q 001755 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYI 955 (1017)
Q Consensus 878 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~--~~~~i~g~~l~V 955 (1017)
|....+||||||...+++.+|+++|-+||+|+++.+.. .++||||+|.+.++|+.|.+. +...|+|++|+|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-------ccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 44568999999999999999999999999999976543 347999999999999999987 688999999999
Q ss_pred EeccC
Q 001755 956 EERRP 960 (1017)
Q Consensus 956 e~~r~ 960 (1017)
.+.++
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99888
No 172
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.59 E-value=7.1e-06 Score=94.62 Aligned_cols=123 Identities=16% Similarity=0.093 Sum_probs=93.8
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHH
Q 001755 214 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 293 (1017)
Q Consensus 214 e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar 293 (1017)
+...|+.++|..+-.++|..++.+.--|.-|+.++-..+++++|..+|+.|+.+ .|++..||.-++.+..++++++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-EKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 344577777877888888888888888888888777777888888888888874 4778888888888777888887777
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 294 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 338 (1017)
Q Consensus 294 ~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~ 338 (1017)
..-.+++ ++.|.....|+.++....-+|++..|..+++......
T Consensus 130 ~tr~~LL-ql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 130 ETRNQLL-QLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777655 4677778888888877777788888877777766655
No 173
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.57 E-value=6.3e-08 Score=100.32 Aligned_cols=71 Identities=25% Similarity=0.512 Sum_probs=65.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEeccC
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 960 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r~ 960 (1017)
.+|||||||..+++.+|+.+|++||+|..|+| | |.||||..++...++.||.. ++..|+|..|+|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI-v--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI-V--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee-e--------cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 47999999999999999999999999999987 3 35999999999999999996 79999999999998776
Q ss_pred C
Q 001755 961 N 961 (1017)
Q Consensus 961 ~ 961 (1017)
+
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 5
No 174
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.57 E-value=3.3e-07 Score=110.62 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=60.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCeeE------eeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeE
Q 001755 879 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQ 952 (1017)
Q Consensus 879 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~------v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~ 952 (1017)
...++|||||||+.+|+++|+++|+.++.... +. .+.+...++.+|||||+|.+.++|..||..+|+.|.|+.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~-~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~ 251 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGK-HVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVF 251 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCC-ceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCce
Confidence 35689999999999999999999997521100 00 011112245689999999999999999988999999999
Q ss_pred EEEEec
Q 001755 953 VYIEER 958 (1017)
Q Consensus 953 l~Ve~~ 958 (1017)
|+|...
T Consensus 252 l~v~r~ 257 (509)
T TIGR01642 252 LKIRRP 257 (509)
T ss_pred eEecCc
Confidence 999643
No 175
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.56 E-value=8.8e-06 Score=93.90 Aligned_cols=171 Identities=14% Similarity=0.097 Sum_probs=148.5
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
+.|.....+...++.++ .+++..-.++.+..|...|.+.+-.-..+..+...|+.++|-....+++. +.+++.-.|--
T Consensus 3 l~~KE~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-~d~~S~vCwHv 80 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-NDLKSHVCWHV 80 (700)
T ss_pred CChHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc-cCcccchhHHH
Confidence 34555567777777654 57888999999999999999999999999999999999999999999998 55778888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHH
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 358 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l 358 (1017)
+|.+.....++++|+++|..++ .+.|++..+|..++-+....++++-....-.+.++..+.. ...|+.+|.--
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl-~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~------ra~w~~~Avs~ 153 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNAL-KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ------RASWIGFAVAQ 153 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh------HHHHHHHHHHH
Confidence 9999999999999999999997 5799999999999999999999999999988999988876 45777777765
Q ss_pred HHhhCCHHHHHHHHHHHhhhc
Q 001755 359 HLVSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 359 ~~~~g~~e~Ar~i~~~al~~~ 379 (1017)
.. .|++..|..+++...+..
T Consensus 154 ~L-~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 154 HL-LGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HH-HHHHHHHHHHHHHHHHhh
Confidence 55 899999999998888766
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.55 E-value=2.3e-06 Score=83.84 Aligned_cols=105 Identities=11% Similarity=-0.037 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 001755 235 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 314 (1017)
Q Consensus 235 p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~ 314 (1017)
+..-+.-+.|+..+...|++++|..+|+-++. ..|.+...|+.++.++...|++.+|+..|.+++ .++|+++..++..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~-~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI-YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCCchHHHHH
Confidence 45567778899999999999999999988887 459999999999999999999999999999987 5799999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 315 ANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 315 a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
+..+...|+.+.|++.|+.++..+..+
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999998543
No 177
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.55 E-value=3.2e-07 Score=74.82 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=46.4
Q ss_pred HHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 898 IEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 898 L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
|.++|++||+|.++.+ ..+. +|+|||+|.+.++|..|++. +|..++|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~--~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKI--FKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEE--ETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEE--EeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999999999754 2221 58999999999999999987 899999999999874
No 178
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=1.9e-05 Score=88.98 Aligned_cols=163 Identities=17% Similarity=0.065 Sum_probs=119.2
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 001755 201 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 280 (1017)
Q Consensus 201 ~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a 280 (1017)
+..+..|...+.-....|.+++|+.++...+...|+++.+|-..+.++.+.++..+|.+.|++++.+. |..+.+|+.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHH
Confidence 34556666666666667788888888888888888888888888888888888888888888888755 77788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHH
Q 001755 281 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 360 (1017)
Q Consensus 281 ~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~ 360 (1017)
..+.+.|+..+|..++.+.+. -+|+++..|..+++.+..+|+..++...+- ..++.
T Consensus 382 ~all~~g~~~eai~~L~~~~~-~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------------E~~~~ 437 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLF-NDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------------EGYAL 437 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------------HHHHh
Confidence 888888888888888888654 478888888888888888887766654332 22223
Q ss_pred hhCCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001755 361 VSRNAEKARQILVDSLDHVQLSKPLLEAL 389 (1017)
Q Consensus 361 ~~g~~e~Ar~i~~~al~~~P~~~~lw~~~ 389 (1017)
.|+++.|...+.++.+....+...|..+
T Consensus 438 -~G~~~~A~~~l~~A~~~~~~~~~~~aR~ 465 (484)
T COG4783 438 -AGRLEQAIIFLMRASQQVKLGFPDWARA 465 (484)
T ss_pred -CCCHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 7777777777777777664444444433
No 179
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.50 E-value=8.4e-08 Score=104.68 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=74.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEecc
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 959 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~r 959 (1017)
+.++||||+|+++++++.|++.|++||+|.+|.| ++++.+++++||+||+|++.+.+.++|....+.|+|+.|.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~v-m~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVV-MRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEE-eccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 5689999999999999999999999999999965 688899999999999999999999999988999999999887776
Q ss_pred CCC
Q 001755 960 PNT 962 (1017)
Q Consensus 960 ~~~ 962 (1017)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 544
No 180
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=3.5e-05 Score=82.55 Aligned_cols=209 Identities=15% Similarity=0.120 Sum_probs=164.4
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
.++.+++.-..++.-+...|++..|+.-|..|+..+|++....++.+..++..|+..-|..-|.|.+++- |+..-..++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-pDF~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK-PDFMAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-ccHHHHHHH
Confidence 4567777888888877788999999999999999999999999999999999999999999999999854 788888899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCC---cHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhhcCCCc
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANM------------ERRLGNLEDAFSLYEQAIAIEKGKEH 343 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~---~~~~~~~~a~~------------e~r~g~~e~A~~iye~al~~~~~~~~ 343 (1017)
.+.++.++|.++.|..-|..++.. +|+ ..++..+++-+ ..-.|+...|+......|+..+-+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~-~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-- 188 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQH-EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-- 188 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhc-CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch--
Confidence 999999999999999999998753 663 33443333322 112378888888888888887754
Q ss_pred cCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001755 344 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 344 ~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~ 419 (1017)
..|+...+..+.. .|++.+|..=++.+-+...++.+.+.....|+...++. +.....+..+|+.+|+.
T Consensus 189 ----a~l~~~Rakc~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~---~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 189 ----ASLRQARAKCYIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDA---ENSLKEIRECLKLDPDH 256 (504)
T ss_pred ----hHHHHHHHHHHHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhH---HHHHHHHHHHHccCcch
Confidence 4566666666555 88999999999988888888888888888888887765 44555556667776664
No 181
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.50 E-value=2.1e-06 Score=98.06 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=61.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 001755 244 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 323 (1017)
Q Consensus 244 ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~ 323 (1017)
-+.-+...++++.|..+|++|+.+. |.++.+|+.+|.++..+|++++|+..|++++ .++|++..+|++++.++..+|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI-ELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHhCC
Confidence 3444555566666666666666643 6666666666666666666666666666654 3566666666666666666677
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 001755 324 LEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 324 ~e~A~~iye~al~~~~~~ 341 (1017)
+++|+..|++++.+.+++
T Consensus 86 ~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 86 YQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 777777777776666654
No 182
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=2.4e-07 Score=98.23 Aligned_cols=78 Identities=19% Similarity=0.386 Sum_probs=71.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
-.+|||..+.++.+++||+.+|+.||+|++|.+ .+...++..||||||+|.+..+...||.. |-++++|+-|+|-..-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L-Ar~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEe-eccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 479999999999999999999999999999985 67777788999999999999999999988 7899999999997654
No 183
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.47 E-value=8.4e-07 Score=98.97 Aligned_cols=83 Identities=24% Similarity=0.468 Sum_probs=72.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
-++.|||.+|+..+...+|+.+|++||+|.-.+| |.+-.+.-.+|||||++.+.++|.++|+. ..+.|.|+.|.|+.+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKV-VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKV-VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceee-eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 5789999999999999999999999999988776 44555555789999999999999999998 689999999999988
Q ss_pred cCCCC
Q 001755 959 RPNTG 963 (1017)
Q Consensus 959 r~~~~ 963 (1017)
+....
T Consensus 483 KNEp~ 487 (940)
T KOG4661|consen 483 KNEPG 487 (940)
T ss_pred ccCcc
Confidence 75443
No 184
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.47 E-value=7.7e-06 Score=92.04 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=116.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHH
Q 001755 225 KLYERCLIACANYPEYWIRYVLCMEASGS------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA 292 (1017)
Q Consensus 225 ~lyeraL~~~p~~~~lW~~ya~~l~~~g~------------~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~A 292 (1017)
.-|+|.+..+|.+.+.|+.|+.+....-. .+.-..+|+||++. .|.+..+++.+.....+.-+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45788888888888888888887776422 35566778888885 478888888888888888888888
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhcCCCcc------------CcHHHHHHHHHHH
Q 001755 293 RAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYEQAIAIEKGKEHS------------QTLPMLYAQYSRF 357 (1017)
Q Consensus 293 r~iy~~~~~~l~P~~~~~~~~~a~~e~r~---g~~e~A~~iye~al~~~~~~~~~------------~~~~~l~~~~a~~ 357 (1017)
.+.+++++. .+|++..+|..|.++.... -.++..+.+|.+++......... ..+..++.++.+|
T Consensus 85 ~~~we~~l~-~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEELLF-KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHH-HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 888888764 4888888888888887663 46788888888888866533211 2344566788899
Q ss_pred HHHhhCCHHHHHHHHHHHhhhcC
Q 001755 358 LHLVSRNAEKARQILVDSLDHVQ 380 (1017)
Q Consensus 358 l~~~~g~~e~Ar~i~~~al~~~P 380 (1017)
+.. .|-.+.|..+++-.|+.+-
T Consensus 164 l~~-aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 164 LRQ-AGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHH-CCchHHHHHHHHHHHHHHc
Confidence 877 9999999999999999653
No 185
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=9.5e-06 Score=100.15 Aligned_cols=208 Identities=11% Similarity=0.034 Sum_probs=154.6
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--------
Q 001755 232 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET-------- 303 (1017)
Q Consensus 232 ~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l-------- 303 (1017)
...|.+.++|..++..+...+++++|..+.+.+++.+ |+...+|+..|.++.+.+++..+..+ +++..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4468999999999999999999999999999999855 99999999999999888887776665 333221
Q ss_pred ----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 001755 304 ----------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILV 373 (1017)
Q Consensus 304 ----------~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~ 373 (1017)
.+.+..+++.+|.++.++|+.++|..+|+++++..+.+ +.++.+||.++.. . ++++|++++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n------~~aLNn~AY~~ae-~-dL~KA~~m~~ 173 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN------PEIVKKLATSYEE-E-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc------HHHHHHHHHHHHH-h-hHHHHHHHHH
Confidence 33344789999999999999999999999999999887 6788899999777 5 9999999999
Q ss_pred HHhhhcCCCH------HHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHH
Q 001755 374 DSLDHVQLSK------PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQL 447 (1017)
Q Consensus 374 ~al~~~P~~~------~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~ 447 (1017)
+|+..+=+.. .+|..++... +.+.+....+.++.+.+.... ....++...-++.....+.++
T Consensus 174 KAV~~~i~~kq~~~~~e~W~k~~~~~-----~~d~d~f~~i~~ki~~~~~~~-------~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 174 KAIYRFIKKKQYVGIEEIWSKLVHYN-----SDDFDFFLRIERKVLGHREFT-------RLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHhcC-----cccchHHHHHHHHHHhhhccc-------hhHHHHHHHHHHHhhhhhhhH
Confidence 9998643222 3666666443 233455666666665543211 112233333344445556778
Q ss_pred HHHHHHHHHHhcCCC
Q 001755 448 IKKAEDRHARLFLPH 462 (1017)
Q Consensus 448 ~~~~~~r~~~~~~~~ 462 (1017)
.-.++++.++..+.+
T Consensus 242 ~i~iLK~iL~~~~~n 256 (906)
T PRK14720 242 VIYILKKILEHDNKN 256 (906)
T ss_pred HHHHHHHHHhcCCcc
Confidence 888888888877654
No 186
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.44 E-value=6.6e-07 Score=97.78 Aligned_cols=81 Identities=19% Similarity=0.396 Sum_probs=73.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEeccC
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 960 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~r~ 960 (1017)
..+||||+||.++++.++++.|.+||.|..+.+ +.|..+.+.+||+||.|.+.+++++++...-+.|+|+.+.|..+-+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~-~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVI-MYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEE-eecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 479999999999999999999999998888755 4577788999999999999999999998889999999999988776
Q ss_pred CC
Q 001755 961 NT 962 (1017)
Q Consensus 961 ~~ 962 (1017)
+.
T Consensus 176 k~ 177 (311)
T KOG4205|consen 176 KE 177 (311)
T ss_pred hh
Confidence 54
No 187
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.37 E-value=8.8e-07 Score=88.27 Aligned_cols=79 Identities=27% Similarity=0.329 Sum_probs=68.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcC-CCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNF-GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~-G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
..-+||+.+|..+.+..+...|.+| |.+..++ +-|+++||.+||||||+|++.+.|+-|-+. |++.|+|+.|.|.+-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r-lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFR-LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEE-eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 4578999999999999999999998 6666543 458999999999999999999999999887 799999999888654
Q ss_pred cC
Q 001755 959 RP 960 (1017)
Q Consensus 959 r~ 960 (1017)
-+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 43
No 188
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=8.4e-07 Score=100.51 Aligned_cols=74 Identities=24% Similarity=0.461 Sum_probs=65.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
..|||+||+.+++..+|.++|+.||.|.+|++..+. .| ++|| ||+|++.++|++||+. ||..+.|++|.|....
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~--~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE--NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC--CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 349999999999999999999999999999875433 34 8999 9999999999999998 8999999999996543
No 189
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.35 E-value=1.1e-06 Score=89.16 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=69.6
Q ss_pred CccEEEEecCCCCCCHHHHHH----HHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEE----EFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 954 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~----~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~ 954 (1017)
++.+|||.||+..+..++|+. +|++||.|.+|. -.++.+.+|-|||.|.+.+.|-.|+.. +|+.+-|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~----a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDIS----AFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEE----ecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 445999999999999999988 999999998742 245678999999999999999999998 79999999999
Q ss_pred EEeccCCC
Q 001755 955 IEERRPNT 962 (1017)
Q Consensus 955 Ve~~r~~~ 962 (1017)
|.+++.+.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99987654
No 190
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.35 E-value=8e-06 Score=93.36 Aligned_cols=105 Identities=17% Similarity=0.074 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 001755 207 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 286 (1017)
Q Consensus 207 W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~ 286 (1017)
+..-+.-....|+++.|+.+|++||...|.+..+|+.++.++...|++++|...+++|+.+. |.++.+|+.++.++..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 44556666788999999999999999999999999999999999999999999999999965 99999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCcHHHHHH
Q 001755 287 GDIDGARAAYQLVHTETSPGLLEAIIK 313 (1017)
Q Consensus 287 g~~~~Ar~iy~~~~~~l~P~~~~~~~~ 313 (1017)
|++++|+..|++++ .++|++..+...
T Consensus 84 g~~~eA~~~~~~al-~l~P~~~~~~~~ 109 (356)
T PLN03088 84 EEYQTAKAALEKGA-SLAPGDSRFTKL 109 (356)
T ss_pred CCHHHHHHHHHHHH-HhCCCCHHHHHH
Confidence 99999999999987 579987765443
No 191
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.34 E-value=9.6e-07 Score=93.01 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=109.2
Q ss_pred HHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHc-------------C---------ChHHHHHHHHHHHHhc
Q 001755 177 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD-------------G---------DFNKVVKLYERCLIAC 234 (1017)
Q Consensus 177 ~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~-------------g---------~~~~a~~lyeraL~~~ 234 (1017)
.+++.|..||..+.|+--+ +.-+..|+.+|... | -..+...+|.|+....
T Consensus 32 ~IvktRr~fE~rL~rr~~k--------lnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkf 103 (435)
T COG5191 32 RIVKTRRKFELRLQRREKK--------LNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKF 103 (435)
T ss_pred HHHHHHHHHHHHHhcccch--------HHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcC
Confidence 3455677799998764333 34788888888321 1 1235566788998899
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhcCCCcHHHHHH
Q 001755 235 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGDIDGARAAYQLVHTETSPGLLEAIIK 313 (1017)
Q Consensus 235 p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e-e~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~ 313 (1017)
++++.+|..|+.+..+.+.+.+..++|..||..+ |.+.++|+..+.++ ..+++++.+|.+|.+.+ .++|.++.+|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl-R~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGL-RMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhh-ccCCCCchHHHH
Confidence 9999999999999999999999999999999976 99999999977766 67899999999999987 579999999999
Q ss_pred HHHHHHH
Q 001755 314 HANMERR 320 (1017)
Q Consensus 314 ~a~~e~r 320 (1017)
|..+|..
T Consensus 182 yfr~El~ 188 (435)
T COG5191 182 YFRMELM 188 (435)
T ss_pred HHHHHHH
Confidence 9988763
No 192
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.32 E-value=5e-06 Score=87.37 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=70.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 878 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
+.-..+|+|.||++.+++++|+++|..||.++.+- +.-...|.+.|.|=|.|...++|.+|++. +++.++|+.++++
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~--vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVA--VHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEe--eccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 33458899999999999999999999999888854 44456789999999999999999999998 8999999999987
Q ss_pred ecc
Q 001755 957 ERR 959 (1017)
Q Consensus 957 ~~r 959 (1017)
...
T Consensus 158 ~i~ 160 (243)
T KOG0533|consen 158 IIS 160 (243)
T ss_pred Eec
Confidence 654
No 193
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=5.1e-06 Score=88.40 Aligned_cols=106 Identities=20% Similarity=0.125 Sum_probs=82.3
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhC
Q 001755 284 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 363 (1017)
Q Consensus 284 e~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g 363 (1017)
.+.++|.+|...|.+++ +++|.+.-.|.+++..+.++|.++.|.+-.+.||.+.+.. +..|..++..++- +|
T Consensus 92 m~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y------skay~RLG~A~~~-~g 163 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY------SKAYGRLGLAYLA-LG 163 (304)
T ss_pred HHhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH------HHHHHHHHHHHHc-cC
Confidence 35678888888888876 5788888888888888888888888888888888887764 6677777777555 88
Q ss_pred CHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCC
Q 001755 364 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 397 (1017)
Q Consensus 364 ~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~ 397 (1017)
++++|...|+++|+++|++..+|..+--.|..++
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 8888888888888888888877765555554443
No 194
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.31 E-value=6.7e-06 Score=72.71 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 285 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~ 285 (1017)
.|...+..+...|++++++.+|++++...|.+..+|+.++.++...++++.|..+|++++... +.+..+|..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 355555555556666666666666666666666666666666666666666666666666543 5555566666666666
Q ss_pred cCCHHHHHHHHHHHh
Q 001755 286 NGDIDGARAAYQLVH 300 (1017)
Q Consensus 286 ~g~~~~Ar~iy~~~~ 300 (1017)
.|++++|...+.+++
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666666643
No 195
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.31 E-value=0.00055 Score=81.27 Aligned_cols=263 Identities=13% Similarity=0.074 Sum_probs=165.1
Q ss_pred hhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHH
Q 001755 183 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-----GSMDLA 257 (1017)
Q Consensus 183 ~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~-----g~~e~A 257 (1017)
-.++++|...--+ ...-.+.+..-...++++.+.|+.+.|..+|...|..+|.+...+..|..++... .+.+..
T Consensus 18 g~~~~AL~~L~~~-~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 18 GDYEEALEHLEKN-EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred CCHHHHHHHHHhh-hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 4477777431111 1111233455556688889999999999999999999999999999998887332 256777
Q ss_pred HHHHHHHHHhhcCCChHHHHH----------------HHHHHHHcC-------------CHHH---HHHHHHHHhhhc--
Q 001755 258 HNALARATHVFVKRLPEIHLF----------------AARFKEQNG-------------DIDG---ARAAYQLVHTET-- 303 (1017)
Q Consensus 258 ~~v~~rAl~~~~p~~~~i~l~----------------~a~~ee~~g-------------~~~~---Ar~iy~~~~~~l-- 303 (1017)
..+|+.....+ |++..+... |..-..+.| +.++ ...++......+
T Consensus 97 ~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 97 LELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 88888776655 542221111 010011111 1111 112222211111
Q ss_pred ------------CCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHH
Q 001755 304 ------------SPGLLEAI--IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR 369 (1017)
Q Consensus 304 ------------~P~~~~~~--~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar 369 (1017)
.|-...+| +-+++.+.+.|++++|....++||+..|.. ..+++.-|+++-. .|++++|.
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~------~ely~~KarilKh-~G~~~~Aa 248 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL------VELYMTKARILKH-AGDLKEAA 248 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHH-CCCHHHHH
Confidence 11223345 556888999999999999999999998875 7899888999554 99999999
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH--HHHHhhCCHHH
Q 001755 370 QILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL--EFLGLFGDAQL 447 (1017)
Q Consensus 370 ~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l--~fe~~~Gd~~~ 447 (1017)
+.++.|-+.+..+.-+=...+......+.. +.+.+++..+..... + ..-+..++..+|...- +-..+.|+...
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~---e~A~~~~~~Ftr~~~-~-~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRI---EEAEKTASLFTREDV-D-PLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCH---HHHHHHHHhhcCCCC-C-cccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999998877777777777777655 777777777654432 2 2224555555553332 11233455555
Q ss_pred HHHHHHHHHHhc
Q 001755 448 IKKAEDRHARLF 459 (1017)
Q Consensus 448 ~~~~~~r~~~~~ 459 (1017)
+.+-+....+.|
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 554444444443
No 196
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.29 E-value=3.5e-05 Score=86.82 Aligned_cols=147 Identities=15% Similarity=0.206 Sum_probs=121.5
Q ss_pred hHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 001755 184 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD------------FNKVVKLYERCLIACANYPEYWIRYVLCMEAS 251 (1017)
Q Consensus 184 ~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~------------~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~ 251 (1017)
.|++.|+. +|.+++.|..|+++-...-. .++-+.+|+|||..+|.+..+|+.|+....+.
T Consensus 7 el~~~v~~--------~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 7 ELNRRVRE--------NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV 78 (321)
T ss_pred HHHHHHHh--------CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 36666653 68888999999998865432 35677899999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHhhhcC-----------------CCcHHHH
Q 001755 252 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN---GDIDGARAAYQLVHTETS-----------------PGLLEAI 311 (1017)
Q Consensus 252 g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~---g~~~~Ar~iy~~~~~~l~-----------------P~~~~~~ 311 (1017)
.+.+...+-+++++..+ |.++.+|..|..+.... -.++..+.+|.+++..+. -..+.++
T Consensus 79 ~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 79 WDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF 157 (321)
T ss_pred CCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 89999999999999865 89999999999998763 368899999998754321 1234568
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001755 312 IKHANMERRLGNLEDAFSLYEQAIAIEK 339 (1017)
Q Consensus 312 ~~~a~~e~r~g~~e~A~~iye~al~~~~ 339 (1017)
++++.|++..|-.+.|..+++..++..-
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 8899999999999999999999999764
No 197
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=7.8e-06 Score=72.27 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 001755 240 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 319 (1017)
Q Consensus 240 lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~ 319 (1017)
.|+..+..+...|++++|..+|++++... |....+|..++.++...+++++|.++|++++ ...|....+|..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL-ELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcchhHHHHHHHHHH
Confidence 58889999999999999999999999854 7788999999999999999999999999986 468888899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhc
Q 001755 320 RLGNLEDAFSLYEQAIAIEK 339 (1017)
Q Consensus 320 r~g~~e~A~~iye~al~~~~ 339 (1017)
..|++++|..+|++++...+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999987654
No 198
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.27 E-value=2e-05 Score=74.45 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCc---HHHHH
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAII 312 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~---~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~---~~~~~ 312 (1017)
+.++..+..+...|++++|...|++++..+ |.+ +.+++.++.++...|+++.|...|++++. ..|++ ..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK-KYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HCCCCCcccHHHH
Confidence 344455555555555555555555555433 222 33444455555555555555555554432 23332 33444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001755 313 KHANMERRLGNLEDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 313 ~~a~~e~r~g~~e~A~~iye~al~~~~~ 340 (1017)
.++.++...|+.++|..+|++++...|+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 4444444444555555555444444443
No 199
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.001 Score=76.00 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=123.6
Q ss_pred hHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH-------HHHHHcCCHHH
Q 001755 184 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV-------LCMEASGSMDL 256 (1017)
Q Consensus 184 ~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya-------~~l~~~g~~e~ 256 (1017)
.|+.+|.. |-....++ .++.-.++.+-.+.+.|.+.+++.+.+.+++.....-.-...++ ..+.+.++++.
T Consensus 239 ~f~~a~q~-y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQH-YAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHH-HHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 35555432 33334455 55666777777777788888888888877766543222112222 23344578899
Q ss_pred HHHHHHHHHHhhcCCChHHHHHH---------------------------HHHHHHcCCHHHHHHHHHHHhhhcCCCcHH
Q 001755 257 AHNALARATHVFVKRLPEIHLFA---------------------------ARFKEQNGDIDGARAAYQLVHTETSPGLLE 309 (1017)
Q Consensus 257 A~~v~~rAl~~~~p~~~~i~l~~---------------------------a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~ 309 (1017)
++..|++++..+ ..+++...+ +.-..+.|++..|.+.|.+++ ..+|++..
T Consensus 317 ai~~~~kaLte~--Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI-kr~P~Da~ 393 (539)
T KOG0548|consen 317 AIKYYQKALTEH--RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI-KRDPEDAR 393 (539)
T ss_pred HHHHHHHHhhhh--cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH-hcCCchhH
Confidence 999999998754 323322221 222234467777777777765 35777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001755 310 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 389 (1017)
Q Consensus 310 ~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~ 389 (1017)
+|.+++-++.++|++..|.+-.+.++++.++. ...|+.-+..+.- ..++++|.+.|+++++.+|.+..+...+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~------~kgy~RKg~al~~-mk~ydkAleay~eale~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNF------IKAYLRKGAALRA-MKEYDKALEAYQEALELDPSNAEAIDGY 466 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 77777777777777777777777777776654 3344444444444 6777777788888877777776655444
Q ss_pred HHH
Q 001755 390 IHF 392 (1017)
Q Consensus 390 a~~ 392 (1017)
...
T Consensus 467 ~rc 469 (539)
T KOG0548|consen 467 RRC 469 (539)
T ss_pred HHH
Confidence 443
No 200
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=4e-05 Score=75.90 Aligned_cols=117 Identities=21% Similarity=0.142 Sum_probs=100.7
Q ss_pred HcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCH
Q 001755 216 RDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDI 289 (1017)
Q Consensus 216 ~~g~~~~a~~lyeraL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~l~~a~~ee~~g~~ 289 (1017)
..++...+...+++.+...|.. ...++.++..+...|++++|...|++++... +. .+.+++.+|.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 4788999999999999999988 5678888999999999999999999999854 43 245788899999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001755 290 DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 335 (1017)
Q Consensus 290 ~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al 335 (1017)
++|...++.+. -.+-...++...++++.+.|+.++|+..|++||
T Consensus 102 d~Al~~L~~~~--~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQIP--DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhcc--CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999998742 244556788899999999999999999999885
No 201
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=8.1e-07 Score=102.80 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=71.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
.++.|+|+|||+.++-.+++.+|..||.|++|+|... ...+.++|||||+|-++.++.+|+.+ .++.|-||+|.++++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 3689999999999999999999999999999987654 34566799999999999999999988 488899999999998
Q ss_pred cC
Q 001755 959 RP 960 (1017)
Q Consensus 959 r~ 960 (1017)
..
T Consensus 691 ~~ 692 (725)
T KOG0110|consen 691 KS 692 (725)
T ss_pred cc
Confidence 64
No 202
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.22 E-value=2.3e-06 Score=99.66 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=67.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
+++||||+|+..+++.+|..+|+.||+|.+|.+ + .++|||||.+....+|.+||.+ +.+.+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-I------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-c------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 689999999999999999999999999999753 2 2578999999999999999998 6899999999999987
Q ss_pred CCC
Q 001755 960 PNT 962 (1017)
Q Consensus 960 ~~~ 962 (1017)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 654
No 203
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=1.9e-05 Score=84.19 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=62.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHH
Q 001755 211 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 290 (1017)
Q Consensus 211 l~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~ 290 (1017)
+.-+.+.++|..|+..|.+||...|+++-++-..+..+.++|.++.|.+-.+.|+.+. |+..+.|..++..+..+|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3333455566666666666666666666666666666666666666666666666643 566666666666666666666
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHH
Q 001755 291 GARAAYQLVHTETSPGLLEAIIKHA 315 (1017)
Q Consensus 291 ~Ar~iy~~~~~~l~P~~~~~~~~~a 315 (1017)
+|.+.|.+++ +++|++...|..+-
T Consensus 167 ~A~~aykKaL-eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKAL-ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhh-ccCCCcHHHHHHHH
Confidence 6666666654 45666554444433
No 204
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.4e-05 Score=85.99 Aligned_cols=231 Identities=14% Similarity=0.086 Sum_probs=166.4
Q ss_pred HHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 001755 172 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 251 (1017)
Q Consensus 172 y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~ 251 (1017)
|-+.+.+-..+..|..+|. +.|.+...|.+.+..+...|+++++..-++..+...+....-..+..++....
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~--------~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAID--------MCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHHHhhHHHHHHHHHHHHH--------hCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 3344555555666777774 45666778888888777788888888888888888888777777777777766
Q ss_pred CCHHHHHHHHHH---------------HHHhhc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 001755 252 GSMDLAHNALAR---------------ATHVFV--KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 314 (1017)
Q Consensus 252 g~~e~A~~v~~r---------------Al~~~~--p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~ 314 (1017)
++..+|...|+- .+..+. |.+...-+.-+.++.-.|++++|..+=-.++ .+++.+.++++-+
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il-kld~~n~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL-KLDATNAEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH-hcccchhHHHHhc
Confidence 666555544331 111111 2345555666888888999999999988876 5799999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHH------HHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH----
Q 001755 315 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM------LYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP---- 384 (1017)
Q Consensus 315 a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~------l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~---- 384 (1017)
+.++.-.++.+.|...|++++...|+...+..... .+-.-+.-+++ .|++.+|.++|..+|.++|.+..
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHH
Confidence 99999999999999999999999998765432111 22233455677 89999999999999999999875
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHHhhc
Q 001755 385 LLEALIHFESIQSSPKQIDFLEQLVDKFLMS 415 (1017)
Q Consensus 385 lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~ 415 (1017)
+|.+.+..-..+++. ..+..-.++++..
T Consensus 289 lY~nra~v~~rLgrl---~eaisdc~~Al~i 316 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRL---REAISDCNEALKI 316 (486)
T ss_pred HHHHhHhhhcccCCc---hhhhhhhhhhhhc
Confidence 666666666666544 3444444555554
No 205
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=1.4e-06 Score=89.38 Aligned_cols=73 Identities=26% Similarity=0.494 Sum_probs=64.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEeccC
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 960 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r~ 960 (1017)
..+|||+||+.+.+.+|+.+|..||.|.++.+. .||+||+|++..+|..|+.. ++..|+|-.+.|++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999986531 37999999999999999977 79999998899999886
Q ss_pred CCC
Q 001755 961 NTG 963 (1017)
Q Consensus 961 ~~~ 963 (1017)
..+
T Consensus 73 ~~~ 75 (216)
T KOG0106|consen 73 KRR 75 (216)
T ss_pred ccc
Confidence 543
No 206
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.21 E-value=5.6e-05 Score=90.07 Aligned_cols=141 Identities=14% Similarity=0.069 Sum_probs=113.3
Q ss_pred CcchHHHHHHHHHHH--HHc---CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHH
Q 001755 200 SVTELENWHNYLDFI--ERD---GDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS--------GSMDLAHNALARATH 266 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~e--~~~---g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~--------g~~e~A~~v~~rAl~ 266 (1017)
.+.+++.|..|+.-. ... +++.+|+.+|++|+..+|++...|-.++.++... .+...+....++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 456778888887643 222 2477999999999999999999998876655432 124456666667665
Q ss_pred h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 001755 267 V-FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE 342 (1017)
Q Consensus 267 ~-~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~ 342 (1017)
+ ..+..+.+|..++......|++++|...|++++ +++|+ ..+|..++.++...|+.++|...|++|+.+.|...
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3 235678899999999889999999999999987 57995 78999999999999999999999999999999863
No 207
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.21 E-value=0.00078 Score=79.98 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhcCCCHHH--
Q 001755 168 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER-----DGDFNKVVKLYERCLIACANYPEY-- 240 (1017)
Q Consensus 168 ~~~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~-----~g~~~~a~~lyeraL~~~p~~~~l-- 240 (1017)
+.++|.+..........|...|. .+|.+..-+..|...... ..+.+....+|+..-...|...-+
T Consensus 44 rA~ll~kLg~~~eA~~~y~~Li~--------rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r 115 (517)
T PF12569_consen 44 RAELLLKLGRKEEAEKIYRELID--------RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR 115 (517)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--------HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhH
Confidence 33444444444444444555554 466666677777666522 235678889999998888865421
Q ss_pred --------------HHHHHHHHHHcC-------------C---HHHHHHHHHHHHHhh--------------cCCC--hH
Q 001755 241 --------------WIRYVLCMEASG-------------S---MDLAHNALARATHVF--------------VKRL--PE 274 (1017)
Q Consensus 241 --------------W~~ya~~l~~~g-------------~---~e~A~~v~~rAl~~~--------------~p~~--~~ 274 (1017)
--.|+.-..+.| + .+....++...+... .+.. .+
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw 195 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLW 195 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHH
Confidence 112222222222 1 112222222222110 0111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHH
Q 001755 275 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 354 (1017)
Q Consensus 275 i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~ 354 (1017)
+++++|..+...|++++|.+..++++. ..|..+++++..|.++.+.|++.+|...++.|..++..+ ..+-...
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~-htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D------RyiNsK~ 268 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE-HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD------RYINSKC 268 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh------HHHHHHH
Confidence 456679999999999999999999874 699999999999999999999999999999999998765 4566677
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhhc
Q 001755 355 SRFLHLVSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 355 a~~l~~~~g~~e~Ar~i~~~al~~~ 379 (1017)
+..+.+ .|++++|.+++......+
T Consensus 269 aKy~LR-a~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 269 AKYLLR-AGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHH-CCCHHHHHHHHHhhcCCC
Confidence 888888 999999999999887655
No 208
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=3.2e-05 Score=73.00 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLF 278 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~l~ 278 (1017)
+.+...+....+.|++++|+..|++++...|.+ ...++.++.++...|+++.|...|++++... |. .+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHH
Confidence 477888888899999999999999999998876 6799999999999999999999999999865 55 3678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHH
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEA 310 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~ 310 (1017)
++.++...|++++|...|++++. ..|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK-RYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH-HCcCChhH
Confidence 99999999999999999999874 58886544
No 209
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.20 E-value=1.7e-05 Score=79.63 Aligned_cols=85 Identities=25% Similarity=0.318 Sum_probs=68.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCccc---CeEEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQVYI 955 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~---g~~l~V 955 (1017)
.-++|||.+||.++...+|..+|..|---..+.+...++...-++-+|||+|.+..+|.+|+.+ ||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999998866555544444443333568999999999999999988 899887 667999
Q ss_pred EeccCCCCC
Q 001755 956 EERRPNTGS 964 (1017)
Q Consensus 956 e~~r~~~~~ 964 (1017)
|.++.+.+.
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999876553
No 210
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.4e-06 Score=89.10 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=67.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C-CCcccCe--EEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S-PIQLAGR--QVYI 955 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~-~~~i~g~--~l~V 955 (1017)
+.++||||-|...-+|+|++.+|..||.|.+|.| +|. ..|.+|||+||.|.+..+++.||.. . ...+-|- .|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tv-lrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTV-LRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEE-ecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 3489999999999999999999999999999976 443 3578999999999999999999988 4 3455554 4888
Q ss_pred EeccCCC
Q 001755 956 EERRPNT 962 (1017)
Q Consensus 956 e~~r~~~ 962 (1017)
.++...+
T Consensus 96 K~ADTdk 102 (371)
T KOG0146|consen 96 KFADTDK 102 (371)
T ss_pred EeccchH
Confidence 8876543
No 211
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=98.18 E-value=9e-06 Score=78.02 Aligned_cols=109 Identities=25% Similarity=0.380 Sum_probs=81.7
Q ss_pred HhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCC---------HHHHHHHHH
Q 001755 180 SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD----GDFNKVVKLYERCLIACANY---------PEYWIRYVL 246 (1017)
Q Consensus 180 ~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~----g~~~~a~~lyeraL~~~p~~---------~~lW~~ya~ 246 (1017)
+++..||..|.. |. ...+.|+.|.+|+.|.++. +.......+++||+..+..+ ..+|+.|+.
T Consensus 3 ~~r~~~e~~i~~-~~----~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~ 77 (126)
T PF08311_consen 3 QQRQEFEEQIRS-YE----EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD 77 (126)
T ss_dssp HHHHHHHHHHHC-CG----GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cc----CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH
Confidence 345568888864 11 2345689999999999865 45677888999999887543 468888887
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 247 CMEASGSMDLAHNALARATHV-FVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 299 (1017)
Q Consensus 247 ~l~~~g~~e~A~~v~~rAl~~-~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~ 299 (1017)
+.. .++++|+.+... +..+++.+|..||.+++..|++++|.+||+..
T Consensus 78 ~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 78 LSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp TBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 543 788888877662 23568899999999999999999999999874
No 212
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.16 E-value=0.00015 Score=80.37 Aligned_cols=175 Identities=17% Similarity=0.217 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC-----Ch
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LP 273 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~------~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~-----~~ 273 (1017)
+.+..-+......+++++|...|++|....-.. ...|...+.++.+. ++++|..+|++|+.++... -.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 355555666667788888888888887664211 23455555555554 8999999999999976443 34
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHhhhcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccC-c
Q 001755 274 EIHLFAARFKEQN-GDIDGARAAYQLVHTETSP-----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ-T 346 (1017)
Q Consensus 274 ~i~l~~a~~ee~~-g~~~~Ar~iy~~~~~~l~P-----~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~-~ 346 (1017)
.++..+|.+++.. |++++|++.|++++.-... .....+.+.+.++.++|++++|..+|++............ .
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 5677889999998 9999999999998542111 1244678899999999999999999999988654432111 1
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCC
Q 001755 347 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 381 (1017)
Q Consensus 347 ~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~ 381 (1017)
...+++. +-+++...||+..|++.|++....+|.
T Consensus 195 ~~~~~l~-a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 195 AKEYFLK-AILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHH-HHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1122222 233444589999999999999988874
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.3e-05 Score=80.31 Aligned_cols=122 Identities=18% Similarity=0.101 Sum_probs=111.5
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC---CHHHHHHH
Q 001755 219 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG---DIDGARAA 295 (1017)
Q Consensus 219 ~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g---~~~~Ar~i 295 (1017)
..++.+.-.+.-|..+|++.+=|..++.++...|+++.|...|.+|+++. |++++++..||..+.... ...+++.+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 46778888999999999999999999999999999999999999999965 999999999999987653 45779999
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 001755 296 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE 342 (1017)
Q Consensus 296 y~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~ 342 (1017)
|++++ .++|.+..+...++.-....|++.+|...++..++..+.+.
T Consensus 216 l~~al-~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQAL-ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHH-hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99987 57999999999999999999999999999999999998764
No 214
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.16 E-value=4.4e-06 Score=96.90 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=66.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g--~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
++|||.||+++++.++|..+|.+.|.|.++.|..+.+.-+ .+.|||||+|.+.++|+.|++. +|+.|+|+.|.|...
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999987654332211 2459999999999999999998 699999999999887
Q ss_pred c
Q 001755 959 R 959 (1017)
Q Consensus 959 r 959 (1017)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 215
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.15 E-value=0.002 Score=71.37 Aligned_cols=229 Identities=19% Similarity=0.155 Sum_probs=144.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 001755 217 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 296 (1017)
Q Consensus 217 ~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy 296 (1017)
.|++.+|.++..|+-...+.-.-.++.-+..-...|+.+.+..++.++.+......-.+.+..++++...|+++.|+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46777777766665555444333333334444446777777777777776432233445555566666777777777777
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc----------------------CCCcc----------
Q 001755 297 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK----------------------GKEHS---------- 344 (1017)
Q Consensus 297 ~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~----------------------~~~~~---------- 344 (1017)
..++ +..|.+.++..-..+++.+.|+......++.+..+..- +.+.+
T Consensus 177 ~~ll-~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLL-EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHH-HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7755 34677777766666666666666665555544333111 00000
Q ss_pred ----CcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001755 345 ----QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 420 (1017)
Q Consensus 345 ----~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~ 420 (1017)
...+.+.+.||.-+.+ +|+.++|.++.+.+|+..-+.. ...++....- +++ +...+..|+.++..|+++
T Consensus 256 pr~lr~~p~l~~~~a~~li~-l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~-~d~---~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIR-LGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRP-GDP---EPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred cHHhhcChhHHHHHHHHHHH-cCChHHHHHHHHHHHHhccChh--HHHHHhhcCC-CCc---hHHHHHHHHHHHhCCCCh
Confidence 1125567777777666 9999999999999998765543 3333332222 223 456778889999999886
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 421 STANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 421 ~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
. |+.......-+.+...+++.+++.+++.-++.
T Consensus 329 ~---------L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 329 L---------LLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred h---------HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 2 67777777777888888889998888877764
No 216
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=2.9e-05 Score=93.24 Aligned_cols=177 Identities=12% Similarity=0.049 Sum_probs=148.7
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CChHHHH
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK-RLPEIHL 277 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p-~~~~i~l 277 (1017)
+|+.-...|--+++++....+..||.+.|.+|...++.+.+.|-..+..+.+..+.+.|..+.-++.+.... .+..-|.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 566667799999999887779999999999999999999999999999999999999999997776664311 3567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHH
Q 001755 278 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 357 (1017)
Q Consensus 278 ~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~ 357 (1017)
+.+-++..-++.-.|...|+.++. .+|++...|..++..+.+.|.+..|.++|.+|..+.|.. +.....-|.+
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR-~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ 639 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALR-TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFKEAVM 639 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhc-CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHHHHHH
Confidence 888888888999999999999884 699999999999999999999999999999999998874 2222334455
Q ss_pred HHHhhCCHHHHHHHHHHHhhhcCCCH
Q 001755 358 LHLVSRNAEKARQILVDSLDHVQLSK 383 (1017)
Q Consensus 358 l~~~~g~~e~Ar~i~~~al~~~P~~~ 383 (1017)
+.. .|.+++|...+...+.......
T Consensus 640 ecd-~GkYkeald~l~~ii~~~s~e~ 664 (1238)
T KOG1127|consen 640 ECD-NGKYKEALDALGLIIYAFSLER 664 (1238)
T ss_pred HHH-hhhHHHHHHHHHHHHHHHHHHH
Confidence 444 9999999999999887654433
No 217
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=9.1e-05 Score=73.34 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=92.4
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCc---HHHHHHHHHHHHHcCC
Q 001755 250 ASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGN 323 (1017)
Q Consensus 250 ~~g~~e~A~~v~~rAl~~~~p~~---~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~---~~~~~~~a~~e~r~g~ 323 (1017)
..++...+...+++.+.-+ |+. ...++.+|.+....|++++|...|+.++.. .|+. ..++++++.++...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 3578888888898888855 665 567778899999999999999999998754 3443 3478889999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 001755 324 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 376 (1017)
Q Consensus 324 ~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al 376 (1017)
+++|+.+++... .. ...+..+...++++.. .|+.++|+..|+++|
T Consensus 101 ~d~Al~~L~~~~----~~---~~~~~~~~~~Gdi~~~-~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIP----DE---AFKALAAELLGDIYLA-QGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhcc----Cc---chHHHHHHHHHHHHHH-CCCHHHHHHHHHHhC
Confidence 999999996621 11 1124556667888777 999999999999986
No 218
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=1.1e-05 Score=71.78 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=57.7
Q ss_pred cCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHH
Q 001755 217 DGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 294 (1017)
Q Consensus 217 ~g~~~~a~~lyeraL~~~p~--~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~ 294 (1017)
+|+++.|+.+|++++...|. +..+|+.++.++.+.|++++|..++++ .... +.+..+++.+|+.+..+|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 56777888888888877774 456777778888888888888888877 4433 5566777777777778888888887
Q ss_pred HHHH
Q 001755 295 AYQL 298 (1017)
Q Consensus 295 iy~~ 298 (1017)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7776
No 219
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.11 E-value=6.7e-06 Score=87.71 Aligned_cols=80 Identities=25% Similarity=0.252 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEe------eEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPD------GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 952 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v------~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~ 952 (1017)
.++.|||.|||.++|.+++.++|++||.|..- +|.+.....|+.||-|.+.|-..+++.-|++. ++..|+|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 46789999999999999999999999988753 22232333488999999999999999999998 799999999
Q ss_pred EEEEecc
Q 001755 953 VYIEERR 959 (1017)
Q Consensus 953 l~Ve~~r 959 (1017)
|+|+.++
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999876
No 220
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.11 E-value=3.8e-06 Score=85.97 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=71.2
Q ss_pred CCCCCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEE
Q 001755 875 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 953 (1017)
Q Consensus 875 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l 953 (1017)
.+.+....+||.|.|..+++++.|-..|++|-.....++ ++++.||+++||+||.|.+..++..|+.. +|..++.+.|
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akv-iRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKV-IRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccc-cccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 345556799999999999999999999999987666554 78999999999999999999999999987 7999999988
Q ss_pred EEE
Q 001755 954 YIE 956 (1017)
Q Consensus 954 ~Ve 956 (1017)
+..
T Consensus 263 klR 265 (290)
T KOG0226|consen 263 KLR 265 (290)
T ss_pred Hhh
Confidence 764
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=98.11 E-value=8.3e-05 Score=84.50 Aligned_cols=165 Identities=8% Similarity=0.073 Sum_probs=126.8
Q ss_pred HHH--HHHHHHH--HHcC---ChHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 001755 205 ENW--HNYLDFI--ERDG---DFNKVVKLYERCL---IACANYPEYWIRYVLCMEAS---------GSMDLAHNALARAT 265 (1017)
Q Consensus 205 ~~W--~~yl~~e--~~~g---~~~~a~~lyeraL---~~~p~~~~lW~~ya~~l~~~---------g~~e~A~~v~~rAl 265 (1017)
+.| ..|+.-. ...+ ..++|..+|+||+ ..+|.+...|-.++.++... ....+|+...+||+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 678 6665433 2222 4678999999999 88998888776666655432 24667888899999
Q ss_pred HhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccC
Q 001755 266 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 345 (1017)
Q Consensus 266 ~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~ 345 (1017)
++. +.++.++..+|.+..-.++++.|...|+++. .++|++..+|+.++.++.-.|+.++|+..+++|+.+.|....
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~-- 407 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK-- 407 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH--
Confidence 954 9999999999999988999999999999986 689999999999999999999999999999999999987532
Q ss_pred cHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 001755 346 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 377 (1017)
Q Consensus 346 ~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~ 377 (1017)
..+...|.+. |- ...++.|.++|-+-.+
T Consensus 408 --~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 408 --AVVIKECVDM-YV-PNPLKNNIKLYYKETE 435 (458)
T ss_pred --HHHHHHHHHH-Hc-CCchhhhHHHHhhccc
Confidence 2222223323 22 5667777777765443
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=4.6e-05 Score=84.48 Aligned_cols=146 Identities=17% Similarity=0.167 Sum_probs=100.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCC
Q 001755 209 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 288 (1017)
Q Consensus 209 ~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~ 288 (1017)
.-+..+.+.|++..|...|+||+....... .-+.++...+. ++ ....|+++|..+.++++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--AL------KLACHLNLAACYLKLKE 272 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HH------HHHHhhHHHHHHHhhhh
Confidence 335566667777777777777765432110 01112222111 11 12457888888889999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHH
Q 001755 289 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKA 368 (1017)
Q Consensus 289 ~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~A 368 (1017)
+.+|....++++ ++.|++..++++.+..+..+|+++.|+..|+++++..|.+ ..+..+++.+-.+.....++.
T Consensus 273 ~~~Ai~~c~kvL-e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N------ka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 273 YKEAIESCNKVL-ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN------KAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred HHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 4689999999999999999999999999999999998887 345556666545544455666
Q ss_pred HHHHHHHhhhcCC
Q 001755 369 RQILVDSLDHVQL 381 (1017)
Q Consensus 369 r~i~~~al~~~P~ 381 (1017)
+++|.+++...+.
T Consensus 346 kk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 346 KKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHhhcccc
Confidence 7888888776654
No 223
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.10 E-value=3.9e-06 Score=87.31 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=67.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
..++|+||||.+.++.++|+..|.+||.|..|+| + |+|+||.|+-.+++..||+. ++.++.|+++.|...
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdi-v--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI-V--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeee-e--------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 3579999999999999999999999999999886 3 46999999999999999987 799999999999887
Q ss_pred cCCCC
Q 001755 959 RPNTG 963 (1017)
Q Consensus 959 r~~~~ 963 (1017)
..+-+
T Consensus 148 tsrlr 152 (346)
T KOG0109|consen 148 TSRLR 152 (346)
T ss_pred ccccc
Confidence 76544
No 224
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.09 E-value=0.00015 Score=74.03 Aligned_cols=119 Identities=15% Similarity=0.071 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHH
Q 001755 236 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 312 (1017)
Q Consensus 236 ~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~ 312 (1017)
.....++.++..+...|++++|...|++++.+. ++ ...+|..+|.++...|++++|+.+|++++. +.|++...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-LNPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcccHHHHH
Confidence 556678888888888899999999999998754 33 246888889999999999999999999874 6888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCH
Q 001755 313 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 383 (1017)
Q Consensus 313 ~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~ 383 (1017)
.++.++...|+...+..-++.++ ..+++|.++|++++..+|++.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~---------------------------~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE---------------------------ALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH---------------------------HHHHHHHHHHHHHHhhCchhH
Confidence 88888888888766654443332 224667788888888888763
No 225
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.07 E-value=6.7e-06 Score=89.60 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=65.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 878 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
....++|||+|||++.|+..|++-|..||.|..++|+ ..|+++| .|.|.++++|++|+.. ++..++||.|+|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim----e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM----ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh----ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 3467899999999999999999999999999988762 2356666 8999999999999998 7999999999997
Q ss_pred e
Q 001755 957 E 957 (1017)
Q Consensus 957 ~ 957 (1017)
+
T Consensus 607 y 607 (608)
T KOG4212|consen 607 Y 607 (608)
T ss_pred e
Confidence 5
No 226
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0019 Score=74.42 Aligned_cols=251 Identities=12% Similarity=0.043 Sum_probs=154.3
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc------------------------------CC-CHHHHHHHHHHH
Q 001755 200 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC------------------------------AN-YPEYWIRYVLCM 248 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~------------------------------p~-~~~lW~~ya~~l 248 (1017)
++.+-.+-+-++..+.+.|++++|..+|+..+... |. ..++.++.+..+
T Consensus 106 ~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~ 185 (652)
T KOG2376|consen 106 DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACIL 185 (652)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHH
Confidence 34444567777888888889999999998886554 22 457888999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCC--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHH-----
Q 001755 249 EASGSMDLAHNALARATHVFVKR--------------LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE----- 309 (1017)
Q Consensus 249 ~~~g~~e~A~~v~~rAl~~~~p~--------------~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~----- 309 (1017)
...|++..|.+++++|+.++... ...|.++++.++..+|+.++|.++|..++....++...
T Consensus 186 i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~ 265 (652)
T KOG2376|consen 186 IENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAV 265 (652)
T ss_pred HhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHh
Confidence 99999999999999996544221 23478889999999999999999999654332221100
Q ss_pred ------------------------------H-------------HHHHHHHHHHcC------------------------
Q 001755 310 ------------------------------A-------------IIKHANMERRLG------------------------ 322 (1017)
Q Consensus 310 ------------------------------~-------------~~~~a~~e~r~g------------------------ 322 (1017)
. +.+.+.+..-.+
T Consensus 266 NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l 345 (652)
T KOG2376|consen 266 NNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL 345 (652)
T ss_pred cchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH
Confidence 0 011111111111
Q ss_pred ----------CHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHH--------HhhhcCCCHH
Q 001755 323 ----------NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD--------SLDHVQLSKP 384 (1017)
Q Consensus 323 ----------~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~--------al~~~P~~~~ 384 (1017)
...+|..++....+..+.+. ..+.+..+.+... .|+++.|.+++.. .++.. ..+.
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-----~~v~L~~aQl~is-~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~ 418 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADGHPEKS-----KVVLLLRAQLKIS-QGNPEVALEILSLFLESWKSSILEAK-HLPG 418 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCchh-----HHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhhhhhhhhc-cChh
Confidence 12233333333333333321 2233334445444 8999999999993 33322 2233
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 385 LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 385 lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
+.-....+....++. +.+-+++..|+........ .......+|.....|..++|+.+++.+++++..+.+++.
T Consensus 419 ~V~aiv~l~~~~~~~---~~a~~vl~~Ai~~~~~~~t--~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDN---DSASAVLDSAIKWWRKQQT--GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HHHHHHHHHHhccCC---ccHHHHHHHHHHHHHHhcc--cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 333333333333333 3456666666655443321 224555677788899999999999999999999977763
No 227
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.04 E-value=7.5e-05 Score=82.60 Aligned_cols=203 Identities=15% Similarity=0.135 Sum_probs=135.8
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 201 VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-ANYPEYWIR-YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 201 ~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~-p~~~~lW~~-ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
...+..+..|+.|+....+.+.++.-++..+... .....++.- -+.++...|++++|..++.+. .+.+....
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3445677777887765556666666655544332 222334433 344555578888888777653 45677788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHH
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 356 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g--~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~ 356 (1017)
...++.+.++++.|.+.++.+ ...+.+..-+.+.-+.+-...| ++.+|..+|+...+..+.. +.++...|.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~-~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t------~~~lng~A~ 209 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNM-QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST------PKLLNGLAV 209 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S------HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC------HHHHHHHHH
Confidence 889999999999999999995 4556664444333333333344 6899999999977765543 556656666
Q ss_pred HHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001755 357 FLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 357 ~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~ 419 (1017)
.... +|++++|.++++++++.+|.+++++.+++-+....|.+. +.+.+++.+.....|++
T Consensus 210 ~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~--~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 210 CHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT--EAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC--HHHHHHHHHCHHHTTTS
T ss_pred HHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHhCCCC
Confidence 6555 999999999999999999999999999999888777652 34566666665566665
No 228
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0003 Score=75.76 Aligned_cols=170 Identities=13% Similarity=0.075 Sum_probs=125.6
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 199 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
.+..+++.|..+.-|. .|++++|...|+-+....--..++|..++.++.-.|.+.+|..+-.+|-+. |-+-.+.+.
T Consensus 54 EEE~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~--pL~~RLlfh 129 (557)
T KOG3785|consen 54 EEEDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT--PLCIRLLFH 129 (557)
T ss_pred hhhHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHH
Confidence 3455789999998775 499999999999999877777999999999999999999999888776541 333333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHH
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 358 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l 358 (1017)
++ .+.|+-++-...-+.+ .. ..+-.+.++.+....-.+.+|+.+|++.+...++. ..+-+..|-..
T Consensus 130 la---hklndEk~~~~fh~~L-qD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey------~alNVy~ALCy 195 (557)
T KOG3785|consen 130 LA---HKLNDEKRILTFHSSL-QD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY------IALNVYMALCY 195 (557)
T ss_pred HH---HHhCcHHHHHHHHHHH-hh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhhHHHHHHHH
Confidence 33 3666665555444442 21 24556677777766778899999999999887764 22334455555
Q ss_pred HHhhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001755 359 HLVSRNAEKARQILVDSLDHVQLSKPLLE 387 (1017)
Q Consensus 359 ~~~~g~~e~Ar~i~~~al~~~P~~~~lw~ 387 (1017)
++ +.-++-+.+++.--|..+|++.-..+
T Consensus 196 yK-lDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 196 YK-LDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred Hh-cchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 66 89999999999999999999986543
No 229
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.03 E-value=2e-05 Score=67.01 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 001755 204 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHV 267 (1017)
Q Consensus 204 l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g-~~e~A~~v~~rAl~~ 267 (1017)
...|..++......|++++|+..|+++|..+|++..+|+.++.++...| ++++|+..|++|+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3567777777777777777777777777777777777777777777776 577777777777764
No 230
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.03 E-value=1.5e-05 Score=67.57 Aligned_cols=67 Identities=24% Similarity=0.375 Sum_probs=52.4
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 001755 215 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 282 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ 282 (1017)
.+.|++++|+.+|++++...|++.++|+.++.++.+.|++++|+.++++++... |+++.+|..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD-PDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG-TTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCHHHHHHHHhcC
Confidence 456788888888888888888888888888888888888888888888888754 6667777777653
No 231
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00022 Score=78.69 Aligned_cols=172 Identities=16% Similarity=0.083 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCc-----------
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL----------- 307 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~----------- 307 (1017)
.+-+.-+.++...+++++|..+--+.+++. +.+.+..+.-+.++.-..+.+.|...|++++ .++|++
T Consensus 170 ~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal-~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 170 KAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL-RLDPDHQKSKSASMMPK 247 (486)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh-ccChhhhhHHhHhhhHH
Confidence 344445677777899999999888888754 7778888888888888999999999999986 356654
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001755 308 -LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 386 (1017)
Q Consensus 308 -~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw 386 (1017)
++.|...++...+.|++..|.++|..+|.+.|++. .....||.+.+....+ +|+..+|..-.+.++++++.-...+
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~--~~naklY~nra~v~~r-Lgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK--KTNAKLYGNRALVNIR-LGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--chhHHHHHHhHhhhcc-cCCchhhhhhhhhhhhcCHHHHHHH
Confidence 45688889999999999999999999999999864 3446677777777666 9999999999999999998877776
Q ss_pred HHHHHHHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001755 387 EALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 418 (1017)
Q Consensus 387 ~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~ 418 (1017)
+.-++-.... .+.+.+.+-|+++++...+
T Consensus 325 l~ra~c~l~l---e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 LRRANCHLAL---EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHhhccc
Confidence 6655544333 2346777788888776544
No 232
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.02 E-value=0.00055 Score=67.82 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=108.1
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHH
Q 001755 216 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 295 (1017)
Q Consensus 216 ~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~i 295 (1017)
+.-|.+|...-....+...|. ..--++++..+.+.|+..+|+..|++++.-.--.++.+.+-+|+.....++..+|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 334555555445555555555 4556777888888888888888888888744456788888888888888888888888
Q ss_pred HHHHhhhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 001755 296 YQLVHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILV 373 (1017)
Q Consensus 296 y~~~~~~l~P~--~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~ 373 (1017)
++.+. +.+|. .++..+.++..+..+|.++.|+..|+.++...++ +.-.+.|+.||.+ +|+.++|+.-|.
T Consensus 147 Le~l~-e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-------~~ar~~Y~e~La~-qgr~~ea~aq~~ 217 (251)
T COG4700 147 LEDLM-EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-------PQARIYYAEMLAK-QGRLREANAQYV 217 (251)
T ss_pred HHHHh-hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-------HHHHHHHHHHHHH-hcchhHHHHHHH
Confidence 88865 34543 3456677778888888888888888888888877 4566778888777 787776665554
Q ss_pred HHhh
Q 001755 374 DSLD 377 (1017)
Q Consensus 374 ~al~ 377 (1017)
...+
T Consensus 218 ~v~d 221 (251)
T COG4700 218 AVVD 221 (251)
T ss_pred HHHH
Confidence 4443
No 233
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.02 E-value=0.0049 Score=68.33 Aligned_cols=238 Identities=12% Similarity=0.039 Sum_probs=174.8
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH-
Q 001755 200 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF- 278 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~- 278 (1017)
+..++..-..........|++..|+.-..+++...|.++++..-...++...|+......++.+.-+...-++.++-..
T Consensus 149 ~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le 228 (400)
T COG3071 149 GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE 228 (400)
T ss_pred CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH
Confidence 4556677778888888889999999999999999999999988888899999998888888876665432333332111
Q ss_pred ---HHHHHHHc---CCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHH
Q 001755 279 ---AARFKEQN---GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 352 (1017)
Q Consensus 279 ---~a~~ee~~---g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~ 352 (1017)
|-.++.+. +..+.-..+++..-.+ -.+++++-..++.-+.++|+.++|.++.+.+++..-+. .+..
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-------~L~~ 300 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-------RLCR 300 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-------hHHH
Confidence 11112122 2333344455553322 33457788889999999999999999999999987663 4443
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 001755 353 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELS 432 (1017)
Q Consensus 353 ~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~ 432 (1017)
.+.++ + .++.+.=.+..++.++.+|+++.+|..+..+-...+.- .++...|+.+|+.-++.. -+
T Consensus 301 ~~~~l--~-~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w---~kA~~~leaAl~~~~s~~----------~~ 364 (400)
T COG3071 301 LIPRL--R-PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW---GKASEALEAALKLRPSAS----------DY 364 (400)
T ss_pred HHhhc--C-CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH---HHHHHHHHHHHhcCCChh----------hH
Confidence 33333 3 78999999999999999999999999999998876544 788999999998765532 23
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 001755 433 CVFLEFLGLFGDAQLIKKAEDRHARLFLP 461 (1017)
Q Consensus 433 ~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~ 461 (1017)
.....-.+..|+...+..+.+..+.++-.
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 44455678889999999999988866543
No 234
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.00 E-value=0.0003 Score=84.77 Aligned_cols=186 Identities=12% Similarity=-0.002 Sum_probs=148.4
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 001755 218 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ 297 (1017)
Q Consensus 218 g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~ 297 (1017)
.+...+...|=|++..++.....|--++.++....++..|+.+|++|.++. +.+...|-..+..+.+..+.+.|..+..
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 346778889999999999999999999999988778999999999999854 7888888889999989999999999866
Q ss_pred HHhhhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 001755 298 LVHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 375 (1017)
Q Consensus 298 ~~~~~l~P~--~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~a 375 (1017)
+.. +..|. ....|..++-.+...+++..|..-|+.|+...|.+ ..+|..++..... .|++..|.++|.++
T Consensus 551 ~~~-qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~-sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 551 RAA-QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPE-SGRYSHALKVFTKA 622 (1238)
T ss_pred HHh-hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHh-cCceehHHHhhhhh
Confidence 653 22332 23457888888888899999999999999998876 6788888888666 99999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhc
Q 001755 376 LDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 415 (1017)
Q Consensus 376 l~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~ 415 (1017)
...+|.+.-.-..-+-+|...|.. +.+...++..+..
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkY---keald~l~~ii~~ 659 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKY---KEALDALGLIIYA 659 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHH
Confidence 999998876666666677666554 4455555555443
No 235
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00029 Score=80.34 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=107.9
Q ss_pred cCChHHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001755 217 DGDFNKVVKLYERCLIACAN--------------------------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVK 270 (1017)
Q Consensus 217 ~g~~~~a~~lyeraL~~~p~--------------------------~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p 270 (1017)
.++++.++..|+++|...-+ -.+--..-+.-..+.|++..|...|.+|+... |
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 35777888888888876533 11111122444555689999999999999855 9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHH
Q 001755 271 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 350 (1017)
Q Consensus 271 ~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l 350 (1017)
+++.++-+.|..+.+++++..|.+-.+.++ +++|+....|++-+.++.-..++++|.+.|.++++..+.. ..+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~i-eL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~------~e~ 462 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCI-ELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN------AEA 462 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh------HHH
Confidence 999999999999999999999999999975 6899999999999999999999999999999999999875 445
Q ss_pred HHHHHHH
Q 001755 351 YAQYSRF 357 (1017)
Q Consensus 351 ~~~~a~~ 357 (1017)
...|.+.
T Consensus 463 ~~~~~rc 469 (539)
T KOG0548|consen 463 IDGYRRC 469 (539)
T ss_pred HHHHHHH
Confidence 5554444
No 236
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.98 E-value=0.00016 Score=73.77 Aligned_cols=119 Identities=14% Similarity=0.121 Sum_probs=95.9
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHH
Q 001755 201 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 277 (1017)
Q Consensus 201 ~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l 277 (1017)
+.+...+..++..+...|+++.|+..|++++...+.. ..+|+.++.++...|+++.|+.+|++++.+. |.+...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 3445678888888899999999999999999887654 4689999999999999999999999999965 88899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 278 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 278 ~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
.++.++...|+...+..-++.+. ..+++|..+|++++...+++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchh
Confidence 99999999888766655544432 12466677777777776665
No 237
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.96 E-value=3.4e-05 Score=65.55 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Q 001755 273 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIE 338 (1017)
Q Consensus 273 ~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g-~~e~A~~iye~al~~~ 338 (1017)
+.+|..+|.++...|++++|+..|.+++ +++|++..+|+.++.++.++| ++++|+..|++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai-~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAI-ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHH-HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 4445555555555555555555555544 245555555555555555555 4555555555555543
No 238
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.0021 Score=76.03 Aligned_cols=233 Identities=18% Similarity=0.226 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH----------HHhc----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERC----------LIAC----------ANYPEYWIRYVLCMEASGSMDLAHNALARA 264 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyera----------L~~~----------p~~~~lW~~ya~~l~~~g~~e~A~~v~~rA 264 (1017)
..+++|+.+++..+|+++|+..||++ |.-+ -.++.+|.=|+.|++..|++|.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 58999999999999999999999975 2222 245678999999999999999999999988
Q ss_pred HHhhc--------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh---------hhcCCCcHHHH----
Q 001755 265 THVFV--------------------KRLPEIHLFAARFKEQNGDIDGARAAYQLVH---------TETSPGLLEAI---- 311 (1017)
Q Consensus 265 l~~~~--------------------p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~---------~~l~P~~~~~~---- 311 (1017)
-.-+. ..+...-+.+|+.++..|++.+|...|.++- .+ +--...+|
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKE-nd~~d~L~nlal 1017 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKE-NDMKDRLANLAL 1017 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHh
Confidence 55321 0144556678999999999999999998751 11 10001111
Q ss_pred -------HHHHHHHHHc-CCHHHHHHHHHHHHHh------------------hcCCCccCcHHHHHHHHHHHHHHhhCCH
Q 001755 312 -------IKHANMERRL-GNLEDAFSLYEQAIAI------------------EKGKEHSQTLPMLYAQYSRFLHLVSRNA 365 (1017)
Q Consensus 312 -------~~~a~~e~r~-g~~e~A~~iye~al~~------------------~~~~~~~~~~~~l~~~~a~~l~~~~g~~ 365 (1017)
..-+..+... |+.++|..+|.+|=-+ ...+-+....+.|+..-++|... ..++
T Consensus 1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~-~~qy 1096 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN-NQQY 1096 (1416)
T ss_pred hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh-HHHH
Confidence 1112222223 3555555555443111 11111112225555555555443 5556
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCH
Q 001755 366 EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDA 445 (1017)
Q Consensus 366 e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~ 445 (1017)
++|.+++-.+-+ +...+.+-...+-. .-+++ ...+ -|.....++...|..+..-..+|....|+.
T Consensus 1097 ekAV~lL~~ar~--------~~~AlqlC~~~nv~----vtee~-aE~m--Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1097 EKAVNLLCLARE--------FSGALQLCKNRNVR----VTEEF-AELM--TPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHhcCCCc----hhHHH-HHhc--CcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 666555433321 11111121111111 00111 1112 233324467889999999999999999987
Q ss_pred HHHHHHHHH
Q 001755 446 QLIKKAEDR 454 (1017)
Q Consensus 446 ~~~~~~~~r 454 (1017)
..+-+-+-+
T Consensus 1162 h~AtKKfTQ 1170 (1416)
T KOG3617|consen 1162 HAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHhh
Confidence 666555544
No 239
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=0.00013 Score=74.18 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 001755 238 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 314 (1017)
Q Consensus 238 ~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~ 314 (1017)
..+|+.++.++...|++++|...|++|+.+. ++ ...+|..+|.++...|++++|++.|++++ .+.|.+...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al-~~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL-ERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcHHHHHHH
Confidence 6788888888888889999999999988754 33 34578888999999999999999999877 4688888888888
Q ss_pred HHHHHHcCC
Q 001755 315 ANMERRLGN 323 (1017)
Q Consensus 315 a~~e~r~g~ 323 (1017)
+.++..+|+
T Consensus 113 a~i~~~~~~ 121 (168)
T CHL00033 113 AVICHYRGE 121 (168)
T ss_pred HHHHHHhhH
Confidence 888875443
No 240
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00018 Score=82.20 Aligned_cols=121 Identities=16% Similarity=0.108 Sum_probs=106.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCC
Q 001755 209 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 288 (1017)
Q Consensus 209 ~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~ 288 (1017)
.++.+....++++.|+.+|++.....|. .+..++.++...++..+|..++++++... |.+..++...|.|+...++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3456666778999999999999888764 77788888888888999999999999854 8899999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 289 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 334 (1017)
Q Consensus 289 ~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~a 334 (1017)
++.|..+.+++. .+.|+..+.|..++..+..+|+++.|...+..+
T Consensus 250 ~~lAL~iAk~av-~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAV-ELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999976 579999999999999999999999999776643
No 241
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.93 E-value=0.00021 Score=72.56 Aligned_cols=85 Identities=13% Similarity=0.025 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 001755 202 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278 (1017)
Q Consensus 202 ~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~ 278 (1017)
.....|..++......|+++.|...|++|+...+.. ..+|..++.++...|++++|+..|++|+.+. |.....|..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 346789999999999999999999999999887653 4589999999999999999999999999864 888888888
Q ss_pred HHHHHHHcC
Q 001755 279 AARFKEQNG 287 (1017)
Q Consensus 279 ~a~~ee~~g 287 (1017)
++.++...|
T Consensus 112 la~i~~~~~ 120 (168)
T CHL00033 112 MAVICHYRG 120 (168)
T ss_pred HHHHHHHhh
Confidence 888887444
No 242
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0024 Score=73.66 Aligned_cols=234 Identities=14% Similarity=0.096 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 285 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~ 285 (1017)
.|..+-. ...++++++|.+...+.|...|+..+....-+-++.+.+++++|..+.+.-.... ......+.-|.++.+
T Consensus 15 l~t~ln~-~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNR-HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHH-hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHH
Confidence 4444333 3567899999999999999999999999999999999999999997655432111 111222566888899
Q ss_pred cCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCH
Q 001755 286 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 365 (1017)
Q Consensus 286 ~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~ 365 (1017)
++..|+|...++. + ++....+..-+++.+.|+|++++|..+|+..++...++.+ ..+... ++..
T Consensus 92 lnk~Dealk~~~~-~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d----~~~r~n---l~a~----- 155 (652)
T KOG2376|consen 92 LNKLDEALKTLKG-L---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD----EERRAN---LLAV----- 155 (652)
T ss_pred cccHHHHHHHHhc-c---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH----HHHHHH---HHHH-----
Confidence 9999999999994 2 5555667888899999999999999999999887655422 122222 2111
Q ss_pred HHHHHH-HHHHhhhcCC-CHHHHHHHHHHHhhCCChhHHHHHHHHHHHH----hhcCCCCCCCCCHHHHHHHHHHHHH--
Q 001755 366 EKARQI-LVDSLDHVQL-SKPLLEALIHFESIQSSPKQIDFLEQLVDKF----LMSNSDSPSTANAAEREELSCVFLE-- 437 (1017)
Q Consensus 366 e~Ar~i-~~~al~~~P~-~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~a----l~~~~~~~~~l~~~~~~~l~~~~l~-- 437 (1017)
-.+..+ +.+.+...|. +.+++.+.+-.+...+.- ..|.++++++ .+...+.... +.+-..+|--.-++
T Consensus 156 ~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky---~qA~elL~kA~~~~~e~l~~~d~~-eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 156 AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY---NQAIELLEKALRICREKLEDEDTN-EEEIEEELNPIRVQLA 231 (652)
T ss_pred HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHhhcccccc-hhhHHHHHHHHHHHHH
Confidence 111111 3444455555 456666666666666555 5566666666 2332222211 23333333333332
Q ss_pred H-HHhhCCHHHHHHHHHHHHHhcCCC
Q 001755 438 F-LGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 438 f-e~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
| +...|+.+.+..+|...++..+..
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 3 567899999999999888877654
No 243
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=3.6e-05 Score=64.62 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 211 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHV 267 (1017)
Q Consensus 211 l~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~ 267 (1017)
+..+.+.|++++|+.+|++++...|.+.++|+.++.++...|++++|+.+|++++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555553
No 244
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.00038 Score=83.05 Aligned_cols=147 Identities=11% Similarity=0.010 Sum_probs=110.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH--c---CCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc--------CCHHHHHHH
Q 001755 229 RCLIACANYPEYWIRYVLCMEA--S---GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN--------GDIDGARAA 295 (1017)
Q Consensus 229 raL~~~p~~~~lW~~ya~~l~~--~---g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~--------g~~~~Ar~i 295 (1017)
++...-|.+.+.|-.|..-... . ++.+.|+.+|++|+++. |++...|-.++..+... .++..+.+.
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3344457888888887665443 2 34779999999999965 98887777765544332 124455666
Q ss_pred HHHHhhh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001755 296 YQLVHTE-TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 374 (1017)
Q Consensus 296 y~~~~~~-l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~ 374 (1017)
.+++... ..|....++..++-.....|++++|...|++|+.+.++ +..|..++.++.. .|+.++|...|++
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~-~G~~~eA~~~~~~ 478 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYEL-KGDNRLAADAYST 478 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 6664321 26666788888888888889999999999999999874 5577778888666 9999999999999
Q ss_pred HhhhcCCCHH
Q 001755 375 SLDHVQLSKP 384 (1017)
Q Consensus 375 al~~~P~~~~ 384 (1017)
|+..+|..+.
T Consensus 479 A~~L~P~~pt 488 (517)
T PRK10153 479 AFNLRPGENT 488 (517)
T ss_pred HHhcCCCCch
Confidence 9999999886
No 245
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.90 E-value=4.2e-05 Score=82.78 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEee------E-EeecCCCcccccEEEEEECCHHHHHHHHHh-CCCccc
Q 001755 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG------V-FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 949 (1017)
Q Consensus 878 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~------i-~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~ 949 (1017)
.....+|||-+||..+++++|.++|.+||.|+.-+ | +.+++.|+++||-|.|.|+|...++.||.. ++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44678999999999999999999999999887521 1 134678999999999999999999999998 799999
Q ss_pred CeEEEEEeccCCCC
Q 001755 950 GRQVYIEERRPNTG 963 (1017)
Q Consensus 950 g~~l~Ve~~r~~~~ 963 (1017)
|..|+|..+..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999987766553
No 246
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.90 E-value=5.7e-05 Score=71.61 Aligned_cols=107 Identities=22% Similarity=0.369 Sum_probs=78.5
Q ss_pred hhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhc---------CCCHHHHHHHHHH
Q 001755 181 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD----GDFNKVVKLYERCLIAC---------ANYPEYWIRYVLC 247 (1017)
Q Consensus 181 ~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~----g~~~~a~~lyeraL~~~---------p~~~~lW~~ya~~ 247 (1017)
.+..||..|.+.|. ..+-|+.|..|++|.++. +.-.....++|||+... +.+..+|+.|+.+
T Consensus 4 ~r~~~e~~i~~~~~-----~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~ 78 (125)
T smart00777 4 QRQAFEQELQDLYE-----GDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN 78 (125)
T ss_pred HHHHHHHHHHhccc-----CCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Confidence 34558888854333 334478999999998753 23456788999999885 5556899999986
Q ss_pred HHHcCCHHHHHHHHHHHHHh-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 248 MEASGSMDLAHNALARATHV-FVKRLPEIHLFAARFKEQNGDIDGARAAYQL 298 (1017)
Q Consensus 248 l~~~g~~e~A~~v~~rAl~~-~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~ 298 (1017)
. +..+++|.-+... +...+..+|..||.+++..|++.+|.+||+.
T Consensus 79 ~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 79 C------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred c------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4 3356677665542 1235788899999999999999999999874
No 247
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=5.2e-05 Score=63.63 Aligned_cols=62 Identities=27% Similarity=0.355 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001755 278 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 278 ~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~ 340 (1017)
.+|..+...|++++|+++|++++ ...|++.++|+.++.++.++|++++|+.+|+++++..|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQAL-KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHH-CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45666777777777777777765 347777777777777777777777777777777777665
No 248
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.88 E-value=4.9e-05 Score=67.52 Aligned_cols=81 Identities=19% Similarity=0.107 Sum_probs=70.1
Q ss_pred cCCHHHHHHHHHHHHHhhcC-C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001755 251 SGSMDLAHNALARATHVFVK-R-LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 328 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p-~-~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~ 328 (1017)
.|+++.|..+|+++++.. | + +..+|+.+|.++.+.|++++|..++++ . ..++.+...++.++..+.++|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 578999999999999966 5 3 577888899999999999999999999 3 457788888888899999999999999
Q ss_pred HHHHHH
Q 001755 329 SLYEQA 334 (1017)
Q Consensus 329 ~iye~a 334 (1017)
.+|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 249
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.87 E-value=1.3e-05 Score=80.15 Aligned_cols=77 Identities=23% Similarity=0.197 Sum_probs=67.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEecc
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r 959 (1017)
.++|||+|+-..++++.|.++|-+-|+|..|. +.+.+.++.| ||||+|+++-++.-|++. ||..+-++.+.|....
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~--ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVG--IPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEe--CCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 38999999999999999999999999998864 4555566677 999999999999999999 8999999998887654
Q ss_pred C
Q 001755 960 P 960 (1017)
Q Consensus 960 ~ 960 (1017)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 250
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00035 Score=75.20 Aligned_cols=121 Identities=15% Similarity=-0.007 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC---CHHHHHH
Q 001755 253 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFS 329 (1017)
Q Consensus 253 ~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g---~~e~A~~ 329 (1017)
.++.....++.-+..+ |.+.+-|.+++.++..+|+.+.|...|.+++ .+.|++.+++..++..+.... ...+++.
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~-rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNAL-RLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3566666677777755 8899999999999999999999999999986 578999999999998877663 3468889
Q ss_pred HHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCC
Q 001755 330 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 382 (1017)
Q Consensus 330 iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~ 382 (1017)
+|++++..++.+. ....-+|.-.+. .|++.+|...|+..|+..|.+
T Consensus 215 ll~~al~~D~~~i------ral~lLA~~afe-~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 215 LLRQALALDPANI------RALSLLAFAAFE-QGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHhcCCccH------HHHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCC
Confidence 9999999988763 222223333334 899999999999999887764
No 251
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=0.0002 Score=79.31 Aligned_cols=206 Identities=14% Similarity=0.115 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC--C----CHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA--N----YPEYWIR 243 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p--~----~~~lW~~ 243 (1017)
..|+..+.+.+....|+++..- +.+.. -.......|..-+..+.+ .+++.|+.+|++|+...- . -..+..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~-~~~~~-~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADC-YEKLG-DKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHH-HHHTT--HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHH-HHHcC-CHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4566666666666667766532 11111 112223566666666554 499999999999998752 2 2457788
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhhcCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC--C----CcHHHH
Q 001755 244 YVLCMEAS-GSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTETS--P----GLLEAI 311 (1017)
Q Consensus 244 ya~~l~~~-g~~e~A~~v~~rAl~~~~p~~-----~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~--P----~~~~~~ 311 (1017)
++.+++.. ++++.|...|++|++++.... ..+...+|.++.+.|++++|.++|+++..... + +.-..+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 89999988 999999999999999875442 45667789999999999999999999764321 1 112356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHhhhc
Q 001755 312 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH-LVSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 312 ~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~-~~~g~~e~Ar~i~~~al~~~ 379 (1017)
+..+-++...|+.-.|+..|++....++.-..+.. ..+...+..... .....+..|..-|.+...++
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E-~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSRE-YKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH-HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH-HHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 67777788889999999999999988875443322 223333333311 12344566666665554444
No 252
>PRK15331 chaperone protein SicA; Provisional
Probab=97.82 E-value=0.00034 Score=69.08 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=96.7
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHH
Q 001755 197 KPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 276 (1017)
Q Consensus 197 ~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~ 276 (1017)
..+++..++.-..++--..+.|+++.|..+|.-....++.+.++|+-++.++...+.++.|...|..|..+. +++|...
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~ 108 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPV 108 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCcc
Confidence 345677778888888777889999999999999999999999999999999999999999999999999754 7899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHH
Q 001755 277 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLE 309 (1017)
Q Consensus 277 l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~ 309 (1017)
+..+.++..+|+.+.|+.+|+.++. .|.+..
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~--~~~~~~ 139 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE--RTEDES 139 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh--CcchHH
Confidence 9999999999999999999999864 566443
No 253
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.82 E-value=0.0047 Score=80.22 Aligned_cols=251 Identities=9% Similarity=0.004 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC-------C
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANY----P--EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-------L 272 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~----~--~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~-------~ 272 (1017)
.+..++......|+++++..+|++++...... . ..+..++..+...|+++.|+..+++++.+.... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 44555666677899999999999999764321 1 234456777778999999999999998864221 1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc---CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHH
Q 001755 273 PEIHLFAARFKEQNGDIDGARAAYQLVHTET---SP-GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 348 (1017)
Q Consensus 273 ~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l---~P-~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~ 348 (1017)
..++..++.++...|++++|+..+++++... .+ .....+..++.+....|+++.|...+++++........ ...+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~-~~~~ 651 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY-HSDW 651 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-cHhH
Confidence 2334556788888899999999999875421 12 23445666788888999999999999999886543211 0001
Q ss_pred HHHHH-HHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH----HHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCC
Q 001755 349 MLYAQ-YSRFLHLVSRNAEKARQILVDSLDHVQLSKP----LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTA 423 (1017)
Q Consensus 349 ~l~~~-~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~----lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l 423 (1017)
..... .....+...|+.+.|..++............ .+..++......+.. +.+..++++++........
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~---~~A~~~l~~al~~~~~~g~-- 726 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF---DEAEIILEELNENARSLRL-- 726 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhCc--
Confidence 11111 1111223379999999998887754332222 234555555666655 6677888887765322211
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 001755 424 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 424 ~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
..........+...+...|+.+.+..++.++.++.....
T Consensus 727 -~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 727 -MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred -hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 112333444456667889999999999999999886643
No 254
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.81 E-value=0.00031 Score=76.36 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=65.4
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---cHHH
Q 001755 238 PEYWIRYVLCM-EASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEA 310 (1017)
Q Consensus 238 ~~lW~~ya~~l-~~~g~~e~A~~v~~rAl~~~~p~~---~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~---~~~~ 310 (1017)
...|+..+..+ .+.|++++|...|++.+..+ |++ +.+|+.+|.++...|++++|+..|++++. ..|+ ..++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~-~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK-NYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCcchhHH
Confidence 45566665554 33566777777777766655 543 45666667777777777777777777553 2443 4666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 311 IIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 311 ~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
|++.+.++..+|+.++|+.+|+++++..|+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 6667777767777777777777777776654
No 255
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=4.5e-05 Score=86.63 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=64.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEeccC
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 960 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~r~ 960 (1017)
.+|||| +++|+..|.++|+++|+|.+++| .+|. | +-|||||.|.++++|.+||.. |-..+.|++|+|.+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rv-c~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRV-CRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEE-eecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 478999 89999999999999999999876 4555 5 899999999999999999998 77889999999987654
Q ss_pred C
Q 001755 961 N 961 (1017)
Q Consensus 961 ~ 961 (1017)
.
T Consensus 75 d 75 (369)
T KOG0123|consen 75 D 75 (369)
T ss_pred C
Confidence 3
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.81 E-value=0.0095 Score=61.31 Aligned_cols=203 Identities=18% Similarity=0.143 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHH-
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLI--ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR- 281 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~--~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~- 281 (1017)
.............+.+..+...++.++. ..+.....|...+.+....+++..+...+.+++... +.....+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD-PDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-CCcchHHHHHHHH
Confidence 4666667777788899999999999997 678888999999999999999999999999998743 444455555555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHH
Q 001755 282 FKEQNGDIDGARAAYQLVHTETSP---GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 358 (1017)
Q Consensus 282 ~ee~~g~~~~Ar~iy~~~~~~l~P---~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l 358 (1017)
++...|+++.|...|.+++. ..| .....+..........++++.+...+.+++...+... ...+..++..+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 212 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD-----AEALLNLGLLY 212 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc-----hHHHHHhhHHH
Confidence 78889999999999999865 666 4566667777777788999999999999999887620 23445555554
Q ss_pred HHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001755 359 HLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 418 (1017)
Q Consensus 359 ~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~ 418 (1017)
.. .++++.|...+..++...|.....+..+.......+ ..+.+...+.+++...+.
T Consensus 213 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 213 LK-LGKYEEALEYYEKALELDPDNAEALYNLALLLLELG---RYEEALEALEKALELDPD 268 (291)
T ss_pred HH-cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC---CHHHHHHHHHHHHHhCcc
Confidence 44 889999999999999999985554444444443333 236677788888776554
No 257
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.00054 Score=65.02 Aligned_cols=95 Identities=18% Similarity=0.073 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFA 279 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~l~~ 279 (1017)
.+...+..+...|+.++|+.+|++++...... ...|+.++..+...|++++|..+|++++..+ |. +..++.++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence 55666777788899999999999998864333 5688899999999999999999999998865 66 77888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 001755 280 ARFKEQNGDIDGARAAYQLVHT 301 (1017)
Q Consensus 280 a~~ee~~g~~~~Ar~iy~~~~~ 301 (1017)
+..+...|+.++|...+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888899999999988887654
No 258
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0013 Score=77.56 Aligned_cols=143 Identities=16% Similarity=0.218 Sum_probs=95.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCC------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Q 001755 213 FIERDGDFNKVVKLYERCLIACAN------------------------YPEYWIRYVLCMEASGSMDLAHNALARAT--- 265 (1017)
Q Consensus 213 ~e~~~g~~~~a~~lyeraL~~~p~------------------------~~~lW~~ya~~l~~~g~~e~A~~v~~rAl--- 265 (1017)
+.++.|-+++|..+|.+|-..+-. --.-+++|+.+++..++++.|+++|+++-
T Consensus 809 LAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha 888 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHA 888 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence 345567777788888877655411 11356788888888888888888887751
Q ss_pred -------Hhhc---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001755 266 -------HVFV---------KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 329 (1017)
Q Consensus 266 -------~~~~---------p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~ 329 (1017)
.-.+ .+++.+|-.|+.+++..|+.|.|..+|..+- -|+....+..-+|+.++|-.
T Consensus 889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~ 959 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAAR 959 (1416)
T ss_pred HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHH
Confidence 1111 1367778888888888888888888888752 26666777777788887766
Q ss_pred HHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 001755 330 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 376 (1017)
Q Consensus 330 iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al 376 (1017)
+-++. ++ ......+|+. |...|++-+|...|.+|-
T Consensus 960 iA~es-----gd------~AAcYhlaR~-YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 960 IAEES-----GD------KAACYHLARM-YENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHhc-----cc------HHHHHHHHHH-hhhhHHHHHHHHHHHHHH
Confidence 54321 21 1233456777 444899999999888764
No 259
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.74 E-value=0.0001 Score=62.36 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=32.7
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 001755 320 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALI 390 (1017)
Q Consensus 320 r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a 390 (1017)
..|++++|+.+|++++...|++ ..++..++.++.+ .|++++|+.++++++..+|++..+|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3455555555555555555544 3444555555444 55555555555555555555544444443
No 260
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.00083 Score=73.08 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=90.3
Q ss_pred HHHHHHHHHH-HHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHH
Q 001755 204 LENWHNYLDF-IERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIH 276 (1017)
Q Consensus 204 l~~W~~yl~~-e~~~g~~~~a~~lyeraL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~ 276 (1017)
-..|...+.- ....|++++|+..|+..+...|++ +..|+.++.++...|++++|+..|++++..+ |+ .++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl 220 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHH
Confidence 4566666554 366799999999999999999988 5799999999999999999999999999866 54 68889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHH
Q 001755 277 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 310 (1017)
Q Consensus 277 l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~ 310 (1017)
+.++.++...|+.++|+++|++++. ..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~-~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK-KYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-HCcCCHHH
Confidence 9999999999999999999999875 58886644
No 261
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.73 E-value=0.0002 Score=79.19 Aligned_cols=241 Identities=13% Similarity=0.074 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CChHHHHHHHH
Q 001755 203 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK-RLPEIHLFAAR 281 (1017)
Q Consensus 203 ~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p-~~~~i~l~~a~ 281 (1017)
.++...-..+-.+..|.++.++.-.. ...+........|+.++....+.+.+..-++..+.-... .++.+.+..|.
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~---~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIK---KSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS----TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhc---cCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 34444444455566676654433221 122333556677777776545555665555443321111 24555666688
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHh
Q 001755 282 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 361 (1017)
Q Consensus 282 ~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~ 361 (1017)
++...|++++|.+++.+. ++++...-.+.++.+.+++|-|.+.|+.+.+...+. .+..+...|..+ ..-
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~----~l~qLa~awv~l-~~g 179 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS----ILTQLAEAWVNL-ATG 179 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH----HHHHHHHHHHHH-HHT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHH-HhC
Confidence 888889999998887663 458888888999999999999999999876654321 223444445444 221
Q ss_pred hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001755 362 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 441 (1017)
Q Consensus 362 ~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~ 441 (1017)
..++.+|.-+|+...+.++.++.+.+.++......++. +.|.++++.++...+.++. ...-.+-....
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~---~eAe~~L~~al~~~~~~~d---------~LaNliv~~~~ 247 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY---EEAEELLEEALEKDPNDPD---------TLANLIVCSLH 247 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H---HHHHHHHHHHCCC-CCHHH---------HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhccCCHH---------HHHHHHHHHHH
Confidence 34699999999999999999999999999999998776 8899999999988776532 22234555666
Q ss_pred hCCH-HHHHHHHHHHHHhcCCCCCchhhh
Q 001755 442 FGDA-QLIKKAEDRHARLFLPHRSTSELR 469 (1017)
Q Consensus 442 ~Gd~-~~~~~~~~r~~~~~~~~~~~~~~k 469 (1017)
.|+. +.+.+...+++...|++..+.+-+
T Consensus 248 ~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp TT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred hCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 7865 778899999999999886555443
No 262
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.71 E-value=0.0011 Score=76.02 Aligned_cols=126 Identities=15% Similarity=0.045 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 001755 240 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 319 (1017)
Q Consensus 240 lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~ 319 (1017)
+--.+..++...++++.|+++|++..+ .+|+++..+|+++...++-.+|.+++.+++. ..|.+.+++...+.++.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~----~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~-~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE----RDPEVAVLLARVYLLMNEEVEAIRLLNEALK-ENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh----cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Confidence 444455666667899999999999776 3477888899999999999999999999885 49999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 001755 320 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 377 (1017)
Q Consensus 320 r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~ 377 (1017)
+.++++.|..+.++++...|.. -..|..+|..... .|+++.|...++.+=-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~-~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSE------FETWYQLAECYIQ-LGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHh-cCCHHHHHHHHhcCcC
Confidence 9999999999999999999987 5678888888666 9999999988775543
No 263
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.69 E-value=3.3e-05 Score=84.45 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=69.6
Q ss_pred ccEEE-EecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEecc
Q 001755 881 VKSVY-VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 959 (1017)
Q Consensus 881 ~~~l~-V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~r 959 (1017)
..++| |+||++.+++++|+.+|..+|.|..+++. .+..++.++||+||+|.+......++......+.++.+.+++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~-~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLP-TDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccC-CCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 45566 99999999999999999999999998753 46678999999999999999988888766678888999999887
Q ss_pred CCC
Q 001755 960 PNT 962 (1017)
Q Consensus 960 ~~~ 962 (1017)
+++
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 654
No 264
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.69 E-value=6.3e-05 Score=79.64 Aligned_cols=87 Identities=11% Similarity=0.269 Sum_probs=78.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcCCChHHH
Q 001755 198 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIH 276 (1017)
Q Consensus 198 ~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~-~g~~e~A~~v~~rAl~~~~p~~~~i~ 276 (1017)
...++++..|..|+.+....+.+..+..+|-.||...|++.++|+..+.+... .++++.+|++|.++++. .++.|.+|
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~-N~~~p~iw 179 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM-NSRSPRIW 179 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc-CCCCchHH
Confidence 34577889999999999999999999999999999999999999998877765 78999999999999985 49999999
Q ss_pred HHHHHHHHH
Q 001755 277 LFAARFKEQ 285 (1017)
Q Consensus 277 l~~a~~ee~ 285 (1017)
..+-++|..
T Consensus 180 ~eyfr~El~ 188 (435)
T COG5191 180 IEYFRMELM 188 (435)
T ss_pred HHHHHHHHH
Confidence 999888754
No 265
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.0052 Score=61.13 Aligned_cols=138 Identities=12% Similarity=-0.019 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHH
Q 001755 275 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 354 (1017)
Q Consensus 275 i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~ 354 (1017)
-++.++..+.+.|++.+|+..|+.++.-+.-++..+.+.+++.....+++..|..+++...+..+.... +.-.+.|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~----pd~~Ll~ 166 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS----PDGHLLF 166 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC----CCchHHH
Confidence 366678888889999999999999988777888999999999999999999999999999998875432 3344567
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHHhhcCCC
Q 001755 355 SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP-KQIDFLEQLVDKFLMSNSD 418 (1017)
Q Consensus 355 a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~-~~~~~ar~l~e~al~~~~~ 418 (1017)
++.+.- .|.++.|+..|+.++...|+ ...-..|..|...++.. ..-...+.+++++....+.
T Consensus 167 aR~laa-~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 167 ARTLAA-QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HHHHHh-cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 888776 99999999999999999987 66777788888887733 2335667888887765443
No 266
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.65 E-value=0.0003 Score=78.87 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=62.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEec
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 958 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~ 958 (1017)
..|-+++||+.+|+++|.++|+..-.+.. .|.+.....+++.|=|||.|++.+.++.||..+...|+.|-|.|..+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCccccc-ceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 57889999999999999999997744433 45444445577889999999999999999999889999998988543
No 267
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.65 E-value=0.00067 Score=65.16 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhcCC--------ChHHHHHHHHHHHH
Q 001755 221 NKVVKLYERCLIACA---NYPEYWIRYVLCMEAS----GSMDLAHNALARATHVFVKR--------LPEIHLFAARFKEQ 285 (1017)
Q Consensus 221 ~~a~~lyeraL~~~p---~~~~lW~~ya~~l~~~----g~~e~A~~v~~rAl~~~~p~--------~~~i~l~~a~~ee~ 285 (1017)
+..+..||..|.... +-.+.|++|+.|.+.. +.......+++||+..+... ...+|+.+|.+..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 355677888887765 5578999999999984 46777889999999977432 3446666665432
Q ss_pred cCCHHHHHHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001755 286 NGDIDGARAAYQLVHT-ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 335 (1017)
Q Consensus 286 ~g~~~~Ar~iy~~~~~-~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al 335 (1017)
.++++|..+.. .+.-.....|..||.++...|++++|.++|+++|
T Consensus 81 -----~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 88899988754 3567789999999999999999999999999886
No 268
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.64 E-value=0.00011 Score=78.10 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=60.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCC--eeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhC-CCcccCeEEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGR--IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS-PIQLAGRQVYI 955 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~--i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~-~~~i~g~~l~V 955 (1017)
....+|||||-|.+|++||.+.+...|- |.+++ +..++.+|.+||||.|...+..++++.++.. ...|.|+.-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmK-FFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMK-FFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhh-hhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3478999999999999999988876663 33332 2457888999999999999999999988885 67888887555
No 269
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.63 E-value=0.0019 Score=67.88 Aligned_cols=160 Identities=14% Similarity=0.067 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH-----
Q 001755 310 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP----- 384 (1017)
Q Consensus 310 ~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~----- 384 (1017)
.++..+......|++++|+..|++++...|.... .....+.++...++ .|+++.|+..|++.++.+|.++.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~---a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY---APQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT---HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 3344444444455555555555555554443211 12333333333334 45555555555555555555442
Q ss_pred HHHHHHHHHhh------CCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHH-HHHH-------HHHHHHhhCCHHHHHH
Q 001755 385 LLEALIHFESI------QSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREE-LSCV-------FLEFLGLFGDAQLIKK 450 (1017)
Q Consensus 385 lw~~~a~~E~~------~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~-l~~~-------~l~fe~~~Gd~~~~~~ 450 (1017)
++..++.+... ..+......+...|+..+...|+++-.-....++. |... -.+|..+.|....+..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 12222222211 22222344555556666666665542211111111 1111 1346666788888888
Q ss_pred HHHHHHHhcCCCCCchhhhhcch
Q 001755 451 AEDRHARLFLPHRSTSELRKRHA 473 (1017)
Q Consensus 451 ~~~r~~~~~~~~~~~~~~kkr~~ 473 (1017)
-++..++.+|+.....+...+..
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~ 185 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLA 185 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHH
Confidence 88889999998765545444444
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.62 E-value=0.014 Score=60.02 Aligned_cols=173 Identities=18% Similarity=0.165 Sum_probs=140.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhhcC---CChHH
Q 001755 200 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL-CMEASGSMDLAHNALARATHVFVK---RLPEI 275 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~-~l~~~g~~e~A~~v~~rAl~~~~p---~~~~i 275 (1017)
.+.....|...+.+....+++..+..+++.++...+.....+..+.. .+...++++.|...|.+++. ..+ .....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 169 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEA 169 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHH
Confidence 34445688888888888899999999999999988887666666666 77888999999999999987 434 34555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHH
Q 001755 276 HLFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 354 (1017)
Q Consensus 276 ~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~-~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~ 354 (1017)
...........++++.|...+.+++. ..+. ....+...+..+...+.++.|...+..++...+.. ...+...
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ 242 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALK-LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN------AEALYNL 242 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHh-hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc------HHHHhhH
Confidence 55566667788999999999999874 5777 68889999999999999999999999999998762 2344445
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhhcCC
Q 001755 355 SRFLHLVSRNAEKARQILVDSLDHVQL 381 (1017)
Q Consensus 355 a~~l~~~~g~~e~Ar~i~~~al~~~P~ 381 (1017)
+..+. ..+.++++...+.+++...|.
T Consensus 243 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 243 ALLLL-ELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCcc
Confidence 55545 488999999999999999987
No 271
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.0012 Score=62.67 Aligned_cols=100 Identities=20% Similarity=0.175 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHH
Q 001755 274 EIHLFAARFKEQNGDIDGARAAYQLVHTET--SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 351 (1017)
Q Consensus 274 ~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l--~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~ 351 (1017)
.+++..|..+...|+.++|..+|++++..- .+....+++.++..++.+|++++|..+|++++...|+.... ..+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~---~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN---AALR 78 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc---HHHH
Confidence 456666667777777777777777765421 12234567777777777777777777777777776653211 3344
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhh
Q 001755 352 AQYSRFLHLVSRNAEKARQILVDSLD 377 (1017)
Q Consensus 352 ~~~a~~l~~~~g~~e~Ar~i~~~al~ 377 (1017)
..++..++. .|+.++|...+-.++.
T Consensus 79 ~f~Al~L~~-~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYN-LGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 445555555 7777777777766664
No 272
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.028 Score=60.74 Aligned_cols=164 Identities=10% Similarity=-0.022 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC---hHHH
Q 001755 203 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---WIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIH 276 (1017)
Q Consensus 203 ~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~l---W~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~---~~i~ 276 (1017)
..+.+..-+.-..+.|++++|+..|++++...|..+.. .+.++..+.+.++++.|...|++.++.+ |++ +.++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHH
Confidence 34456566666677899999999999999999987654 3667777778899999999999999977 654 4455
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 277 LFAARFKEQNG---------------D---IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 338 (1017)
Q Consensus 277 l~~a~~ee~~g---------------~---~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~ 338 (1017)
+..|......+ + ..+|...|++++. ..|++.-+ .+|...+..+....
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-~yP~S~ya--------------~~A~~rl~~l~~~l 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-GYPNSQYT--------------TDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-HCcCChhH--------------HHHHHHHHHHHHHH
Confidence 55565432222 2 2345566666553 46764321 22222222221111
Q ss_pred cCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 001755 339 KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 392 (1017)
Q Consensus 339 ~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~ 392 (1017)
. .--...++|.++ .|.+..|..-++.+++..|++...-..+..+
T Consensus 175 a---------~~e~~ia~~Y~~-~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l 218 (243)
T PRK10866 175 A---------KYELSVAEYYTK-RGAYVAVVNRVEQMLRDYPDTQATRDALPLM 218 (243)
T ss_pred H---------HHHHHHHHHHHH-cCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 1 111245677666 8999999999999999999988644444433
No 273
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00038 Score=59.75 Aligned_cols=67 Identities=22% Similarity=0.396 Sum_probs=49.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 001755 213 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 280 (1017)
Q Consensus 213 ~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a 280 (1017)
.+.+.++++.++.++++++...|.++.+|..++.++...|++++|...|+++++.. |+++......+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~~a 70 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS-PDDPDARALRA 70 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC-CCcHHHHHHHH
Confidence 44567777788888888888888888888888888888888888888888888743 66666554444
No 274
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0012 Score=73.40 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 318 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e 318 (1017)
...++++.++.+.+++..|.....++|++ .|++...++.-++.+...|+++.||..|++++ ++.|.+-.+...++.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLEL-DPNNVKALYRRGQALLALGEYDLARDDFQKAL-KLEPSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHH
Confidence 35688899999999999999999999985 58999999999999999999999999999987 57999999988888887
Q ss_pred HHcCCH-HHHHHHHHHHHHhhcCC
Q 001755 319 RRLGNL-EDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 319 ~r~g~~-e~A~~iye~al~~~~~~ 341 (1017)
.+...+ ++.+++|.+.+......
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc
Confidence 666554 45588888888876643
No 275
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.53 E-value=0.007 Score=63.55 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCh---HHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---EIHLF 278 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~---~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~---~i~l~ 278 (1017)
+.+...+.-..+.|++.+|+.+|++.+...|.. .+.++.++..+.+.|+++.|...|++.+..+ |+++ .+++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~ 84 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHH
Confidence 445555556667777888888888877776643 4566677777777777788887777777765 5533 23333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccC----cH-------
Q 001755 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ----TL------- 347 (1017)
Q Consensus 279 ~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~----~~------- 347 (1017)
.|........ .++ ...+......+|...|+..+...|+..... .+
T Consensus 85 ~g~~~~~~~~-----~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 85 LGLSYYKQIP-----GIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp HHHHHHHHHH-----HHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-----cch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 3332211100 000 001112223344444444444444322110 00
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 001755 348 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 392 (1017)
Q Consensus 348 ~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~ 392 (1017)
..--...|+|.++ .|.+..|..-|+.+|+..|++...-..+..+
T Consensus 141 a~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 141 AEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 0111234667666 9999999999999999999998754444433
No 276
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.51 E-value=0.00025 Score=82.21 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecC--CCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEE
Q 001755 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR--KDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 954 (1017)
Q Consensus 878 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~--~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~ 954 (1017)
++..+.+||+||++.++++.|...|..||+|..++|+.-.. ...+.+.||||-|-+..++++|++. +|+.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999998865321 2334578999999999999999988 79999999999
Q ss_pred EEecc
Q 001755 955 IEERR 959 (1017)
Q Consensus 955 Ve~~r 959 (1017)
+-+.+
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98875
No 277
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.44 E-value=0.00032 Score=78.71 Aligned_cols=75 Identities=25% Similarity=0.266 Sum_probs=63.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~ 958 (1017)
...-|-+++||+++|+++|.++|+.|+ |.++ +..+.+|+..|-|||+|.+.+++++||+.+...|+.|-|.|-.+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~---~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENL---EIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEE---EEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 356788899999999999999999996 6653 33566789999999999999999999999888888888888543
No 278
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.43 E-value=0.00037 Score=76.69 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=53.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEee----cCCCccc--------ccEEEEEECCHHHHHHHHHhC
Q 001755 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR----NRKDVVG--------VCYAFVEFEDISGVQNAIQAS 944 (1017)
Q Consensus 878 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~----~~~~g~~--------kg~aFVeF~~~~~a~~Al~~~ 944 (1017)
+-++++|.+-|||.+-.-+.|.++|+.||.|+.|+|.-- ....+.. +-||+|+|+..+.|.+|.+.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 457899999999999999999999999999999876321 0111222 458999999999999998874
No 279
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.41 E-value=0.00067 Score=58.22 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=36.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 281 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 281 ~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
.++.+.+++++|.+++++++ .++|++..+|..++.++.+.|++++|+..|+++++..|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL-ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH-HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 34455666666666666654 3466666666666666666666666666666666665543
No 280
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.0024 Score=63.21 Aligned_cols=98 Identities=10% Similarity=-0.003 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 001755 238 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 317 (1017)
Q Consensus 238 ~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~ 317 (1017)
-+--+.++.-+...|++++|..+|+-++. ..+.+++.|+.+|.++...+++++|...|..+.. +.++++...+..+.+
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCI-YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccCCCCccchHHHH
Confidence 34456677777788999999999976665 6689999999999999999999999999999864 678888889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 001755 318 ERRLGNLEDAFSLYEQAIAI 337 (1017)
Q Consensus 318 e~r~g~~e~A~~iye~al~~ 337 (1017)
+..+|+.+.|+.+|+.++..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999999984
No 281
>PRK11906 transcriptional regulator; Provisional
Probab=97.38 E-value=0.0073 Score=69.07 Aligned_cols=169 Identities=12% Similarity=-0.001 Sum_probs=115.7
Q ss_pred HHHhcCCCH---HHH--HHH--HHHHHHc---CCHHHHHHHHHHHH---HhhcCCChHHHHHHHHHHHH---------cC
Q 001755 230 CLIACANYP---EYW--IRY--VLCMEAS---GSMDLAHNALARAT---HVFVKRLPEIHLFAARFKEQ---------NG 287 (1017)
Q Consensus 230 aL~~~p~~~---~lW--~~y--a~~l~~~---g~~e~A~~v~~rAl---~~~~p~~~~i~l~~a~~ee~---------~g 287 (1017)
+...-|.+. +.| -.| +..+... .+.+.|..+|.||+ .+. |.+...|-.+|..+.. ..
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~ 318 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELEL 318 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchH
Confidence 333336666 777 333 3333222 24678888999999 643 6655554444333322 23
Q ss_pred CHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHH
Q 001755 288 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 367 (1017)
Q Consensus 288 ~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~ 367 (1017)
+..+|++.-+++. +++|.+..+....+.+..-.++++.|..+|++|+.+.|+. ...+..++..+.- .|+.++
T Consensus 319 ~~~~a~~~A~rAv-eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~------A~~~~~~~~~~~~-~G~~~~ 390 (458)
T PRK11906 319 AAQKALELLDYVS-DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI------ASLYYYRALVHFH-NEKIEE 390 (458)
T ss_pred HHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc------HHHHHHHHHHHHH-cCCHHH
Confidence 4567888888875 6899999999999998888899999999999999999986 5566655655555 999999
Q ss_pred HHHHHHHHhhhcCCCHH--HHHHHHHHHhhCCChhHHHHHHHHHHH
Q 001755 368 ARQILVDSLDHVQLSKP--LLEALIHFESIQSSPKQIDFLEQLVDK 411 (1017)
Q Consensus 368 Ar~i~~~al~~~P~~~~--lw~~~a~~E~~~~~~~~~~~ar~l~e~ 411 (1017)
|++.++++++..|.... +...++++....+ ++++.++|-+
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 432 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhHHHHhh
Confidence 99999999999998764 3344443433322 3444455443
No 282
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.00021 Score=81.44 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=61.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 954 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~ 954 (1017)
..++|+|-|||..++.++|+++|+.||+|+.|+. |-..+|..||+|-|..+|++|+++ ++..|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE------TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4589999999999999999999999999998432 233578999999999999999998 89999999888
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.35 E-value=0.00045 Score=53.04 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 246 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~ 246 (1017)
+.|..++..+...|++++|+.+|+++|..+|+++++|+.++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367777777777777777777777777777777777777764
No 284
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.014 Score=63.42 Aligned_cols=181 Identities=13% Similarity=0.057 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHH
Q 001755 218 GDFNKVVKLYERCLIACA---NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 294 (1017)
Q Consensus 218 g~~~~a~~lyeraL~~~p---~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~ 294 (1017)
.|+..|+.++|-.+.... .+..+|+.+..|.. |++++|.++|.-+.... .-..++|+++|-...-+|.+.+|..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL--gdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL--GDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh--ccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 455555555555553332 34679998877655 89999999998777622 3367899999998888999999999
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001755 295 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 374 (1017)
Q Consensus 295 iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~ 374 (1017)
+-+++ |+.+--...+..+-.++++-++.... ..-+.....+ -+.+|..-+. .--+.+|..+|.+
T Consensus 113 ~~~ka-----~k~pL~~RLlfhlahklndEk~~~~f-h~~LqD~~Ed---------qLSLAsvhYm-R~HYQeAIdvYkr 176 (557)
T KOG3785|consen 113 IAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTF-HSSLQDTLED---------QLSLASVHYM-RMHYQEAIDVYKR 176 (557)
T ss_pred HHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHH-HHHHhhhHHH---------HHhHHHHHHH-HHHHHHHHHHHHH
Confidence 87774 33333333344455778886665543 3333222111 1122222222 3346699999999
Q ss_pred HhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001755 375 SLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 420 (1017)
Q Consensus 375 al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~ 420 (1017)
.|..+|.-..+-..++.--...+-. +....++.-.|..+||.+
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYy---dvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYY---DVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchh---hhHHHHHHHHHHhCCCcH
Confidence 9998887655333333222233323 455677777788888865
No 285
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.28 E-value=0.1 Score=67.88 Aligned_cols=238 Identities=15% Similarity=0.092 Sum_probs=147.0
Q ss_pred HcCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC--------ChHHHHHHHHHHHHc
Q 001755 216 RDGDFNKVVKLYERCLI-ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--------LPEIHLFAARFKEQN 286 (1017)
Q Consensus 216 ~~g~~~~a~~lyeraL~-~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~--------~~~i~l~~a~~ee~~ 286 (1017)
..|++..+..+++++-. ....++.+-..++.++...++++++...+.++....... ...+....+.+....
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34555544444433210 112234455555666667899999999999887643211 123344456777789
Q ss_pred CCHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhh
Q 001755 287 GDIDGARAAYQLVHTETSPGL----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 362 (1017)
Q Consensus 287 g~~~~Ar~iy~~~~~~l~P~~----~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~ 362 (1017)
|++++|...+++++....... ..++..++..+...|++++|+..|++++...............+..++..++. .
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~ 544 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-Q 544 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-C
Confidence 999999999999874322221 12445567778889999999999999998765432211112233556666566 9
Q ss_pred CCHHHHHHHHHHHhhhcCCC--------HHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 001755 363 RNAEKARQILVDSLDHVQLS--------KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCV 434 (1017)
Q Consensus 363 g~~e~Ar~i~~~al~~~P~~--------~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~ 434 (1017)
|+++.|+..+++++...... ..++..++.+....|+. +.++.++++++....... .......+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~---~~A~~~~~~al~~~~~~~----~~~~~~~~~~ 617 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL---DEAEQCARKGLEVLSNYQ----PQQQLQCLAM 617 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH---HHHHHHHHHhHHhhhccC----chHHHHHHHH
Confidence 99999999999998853221 11333445555555554 778888888776533211 1111222222
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 001755 435 FLEFLGLFGDAQLIKKAEDRHARLFLP 461 (1017)
Q Consensus 435 ~l~fe~~~Gd~~~~~~~~~r~~~~~~~ 461 (1017)
........|+.+.+...+.+....+..
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 344566789999999988888776543
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.26 E-value=0.014 Score=66.75 Aligned_cols=165 Identities=14% Similarity=0.041 Sum_probs=111.2
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC---C--------------------
Q 001755 215 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---R-------------------- 271 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p---~-------------------- 271 (1017)
.+..+.++-+++-.+||..+|++.+.|+-++. +......+|..+|++|++.... +
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 45567888899999999999999999987754 3345678888899888774211 1
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHH
Q 001755 272 -LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP-GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 349 (1017)
Q Consensus 272 -~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P-~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~ 349 (1017)
...+...+|....+.|+.++|.+.|..++.+... ++..++..+++.+..++.+.++..++.+.-+..-.+.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS------- 329 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS------- 329 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch-------
Confidence 0112233577788889999999999998765333 2566888888999999999999999888643321111
Q ss_pred HHHHHHHHHHH--hhCC---------------HHHHHHHHHHHhhhcCCCHHHHHH
Q 001755 350 LYAQYSRFLHL--VSRN---------------AEKARQILVDSLDHVQLSKPLLEA 388 (1017)
Q Consensus 350 l~~~~a~~l~~--~~g~---------------~e~Ar~i~~~al~~~P~~~~lw~~ 388 (1017)
..+.|...|.+ ..++ ...|.+.+.+|++.+|.-+.+.+.
T Consensus 330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 12223222222 1222 134667788888888877665543
No 287
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.26 E-value=0.23 Score=55.05 Aligned_cols=124 Identities=22% Similarity=0.132 Sum_probs=65.9
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhcCC---ChHHHHHHHHHH-HHcCCH
Q 001755 216 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH--VFVKR---LPEIHLFAARFK-EQNGDI 289 (1017)
Q Consensus 216 ~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~--~~~p~---~~~i~l~~a~~e-e~~g~~ 289 (1017)
..|+.+.++..-+++-...|.-+-.|.....-....|+.+.|+.+.+.... ++.+. ....-+.-++.. ...-+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 456666666666666666666666666655555556666666666554333 22121 111122222222 222345
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001755 290 DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 290 ~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~ 340 (1017)
..|+..-..+. ++.|+....-+.-+..+.+.|++.++-.+++.+.+..|.
T Consensus 246 ~~Ar~~A~~a~-KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 246 ASARDDALEAN-KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHHHHh-hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 55555555543 456666666666666666666666666666666666554
No 288
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.028 Score=59.36 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=122.6
Q ss_pred chHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhcCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHH
Q 001755 202 TELENWHNYLDFIERDGDFNK-VVKLYERCLIACANYPEYWIRYV-LCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 279 (1017)
Q Consensus 202 ~~l~~W~~yl~~e~~~g~~~~-a~~lyeraL~~~p~~~~lW~~ya-~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~ 279 (1017)
..+..-..+..++...++.+. ...++|..+........+|...+ .++...+++++|..++.+.. .-++...-
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~ 143 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALN 143 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHH
Confidence 346677777777766665444 45567776666666666776554 45556788999988877632 23455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHH
Q 001755 280 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL----GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 355 (1017)
Q Consensus 280 a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~----g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a 355 (1017)
..++.+..+++-|+..++++. .++ ...+..++|+.+... +.+..|--+|+..-+..+.. +.+..-.|
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq-~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T------~~llnG~A 214 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQ-QID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT------PLLLNGQA 214 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-ccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC------hHHHccHH
Confidence 666667778888888888853 323 234444444444433 46778888888877755443 55555555
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCCh
Q 001755 356 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 399 (1017)
Q Consensus 356 ~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~ 399 (1017)
-.... ++++++|..+++.+|..++.+++...+++-.-...|.+
T Consensus 215 v~~l~-~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 215 VCHLQ-LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHH-hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 55444 89999999999999999999999888888877777655
No 289
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.17 E-value=0.00075 Score=51.83 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 280 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a 280 (1017)
++|+.++..+...|++++|+.+|+++++.+ |+++.+|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 345555555555555555555555555533 55555555444
No 290
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.17 E-value=0.0054 Score=57.48 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=59.8
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHH
Q 001755 214 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 293 (1017)
Q Consensus 214 e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar 293 (1017)
..+.|+.+.|+..|.++|..||..+..+.+-++.+.-.|+.++|.+-+++|+++..++-..
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt------------------- 113 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT------------------- 113 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH-------------------
Confidence 3456677777777777777777777777777777766777777777777777654222100
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 294 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 338 (1017)
Q Consensus 294 ~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~ 338 (1017)
-..++..++.+++.+|+.+.||.-|++|-.+.
T Consensus 114 -------------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 114 -------------ACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred -------------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 12345666666777777777777777766553
No 291
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.0048 Score=65.82 Aligned_cols=101 Identities=22% Similarity=0.251 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--CCCcHHHHHHHH
Q 001755 241 WIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTET--SPGLLEAIIKHA 315 (1017)
Q Consensus 241 W~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l--~P~~~~~~~~~a 315 (1017)
.++-+.=+.+.|++..|...|..-+... |+ .+..++.++..+..+|++++|..+|.++.... .|.-++..++++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444555566789999999999988866 54 57788888999999999999999999987542 355678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 001755 316 NMERRLGNLEDAFSLYEQAIAIEKGKE 342 (1017)
Q Consensus 316 ~~e~r~g~~e~A~~iye~al~~~~~~~ 342 (1017)
..+.++|+.++|+.+|+..++..|+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999863
No 292
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.16 E-value=0.017 Score=62.33 Aligned_cols=169 Identities=14% Similarity=0.041 Sum_probs=94.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHH
Q 001755 272 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI---IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 348 (1017)
Q Consensus 272 ~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~---~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~ 348 (1017)
.+..++..|.-....|++++|++.|+.+. ...|....+. +.++..+.+.++++.|+..|++.++..|++... .
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~-~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---D 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---H
Confidence 55666666777777788888888888865 3577665443 666777777788888888888888887776432 2
Q ss_pred HHHHHHHHHHHHhh---------------CC---HHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 001755 349 MLYAQYSRFLHLVS---------------RN---AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVD 410 (1017)
Q Consensus 349 ~l~~~~a~~l~~~~---------------g~---~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e 410 (1017)
..+...+..... . .| ..+|.+.|++.++..|++.-.-..--.+ ..++..+.
T Consensus 107 ~a~Y~~g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl----------~~l~~~la 175 (243)
T PRK10866 107 YVLYMRGLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA 175 (243)
T ss_pred HHHHHHHHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH
Confidence 233332222111 1 11 2345566666666666653211111111 11111100
Q ss_pred HHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCchhhhhcchh
Q 001755 411 KFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAE 474 (1017)
Q Consensus 411 ~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~~~~~~~~~~kkr~~~ 474 (1017)
+.++ .-.+|..+.|....+..-++...+.+|+.....+..-+..+
T Consensus 176 -----------------~~e~--~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ 220 (243)
T PRK10866 176 -----------------KYEL--SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN 220 (243)
T ss_pred -----------------HHHH--HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 0011 12245555677777777777788888877665555555443
No 293
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.15 E-value=0.0017 Score=73.99 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=66.8
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 197 KPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---WIRYVLCMEASGSMDLAHNALARATHV 267 (1017)
Q Consensus 197 ~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~l---W~~ya~~l~~~g~~e~A~~v~~rAl~~ 267 (1017)
.+.+|++...|.+++..+...|++++|+..|++||..+|++.+. |++++.++...|++++|...|++|+++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999965 999999999999999999999999985
No 294
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.14 E-value=0.00021 Score=81.23 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=74.1
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEE
Q 001755 876 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 955 (1017)
Q Consensus 876 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~V 955 (1017)
.++.+.+++|+--|.-.++..+|.++|+.+|+|.+|.| |.|+.++++||.+||+|.|.+++-.||..+|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVri-I~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRI-IGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEe-eccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 45667799999999999999999999999999999975 67888999999999999999999999999999999999999
Q ss_pred Ee
Q 001755 956 EE 957 (1017)
Q Consensus 956 e~ 957 (1017)
..
T Consensus 253 q~ 254 (549)
T KOG0147|consen 253 QL 254 (549)
T ss_pred cc
Confidence 64
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.14 E-value=0.037 Score=56.59 Aligned_cols=203 Identities=18% Similarity=0.143 Sum_probs=128.9
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 219 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 298 (1017)
Q Consensus 219 ~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~ 298 (1017)
+-+||..+|||.+-.+ ..|-...||.-|.+++.+. |+.+++...++.++...|+++.|.++|+.
T Consensus 61 ~eeRA~l~fERGvlYD---------------SlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds 124 (297)
T COG4785 61 DEERAQLLFERGVLYD---------------SLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDS 124 (297)
T ss_pred hHHHHHHHHHhcchhh---------------hhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhh
Confidence 4568888999976543 2355566788888999865 99999999999999999999999999999
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHH-HHHhh
Q 001755 299 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL-VDSLD 377 (1017)
Q Consensus 299 ~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~-~~al~ 377 (1017)
.+ +++|.+--+.++++-...--|++.-|..-+.+--+.+|++- ...+|..+. .. .-+..+|+.-+ +++..
T Consensus 125 ~~-ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP----fR~LWLYl~---E~-k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 125 VL-ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP----FRSLWLYLN---EQ-KLDPKQAKTNLKQRAEK 195 (297)
T ss_pred Hh-ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh----HHHHHHHHH---Hh-hCCHHHHHHHHHHHHHh
Confidence 76 68999888888887666667888888887777766666542 123443322 12 45677776644 44443
Q ss_pred hcCCCHHHHHHHH-HHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001755 378 HVQLSKPLLEALI-HFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 456 (1017)
Q Consensus 378 ~~P~~~~lw~~~a-~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~ 456 (1017)
. +.+.|-..+ .+-...-. .+.+++++..-..++. . ..+-.-+-.....+.....|+++.+..+++-+.
T Consensus 196 ~---d~e~WG~~iV~~yLgkiS------~e~l~~~~~a~a~~n~-~-~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 196 S---DKEQWGWNIVEFYLGKIS------EETLMERLKADATDNT-S-LAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred c---cHhhhhHHHHHHHHhhcc------HHHHHHHHHhhccchH-H-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 2 245553332 23222211 2455665544333221 1 122222222233344556789998888888766
Q ss_pred H
Q 001755 457 R 457 (1017)
Q Consensus 457 ~ 457 (1017)
.
T Consensus 265 a 265 (297)
T COG4785 265 A 265 (297)
T ss_pred H
Confidence 4
No 296
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.14 E-value=0.01 Score=55.68 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=57.5
Q ss_pred HhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 001755 185 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----PEYWIRYVLCMEASGSMDLAHNA 260 (1017)
Q Consensus 185 fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~----~~lW~~ya~~l~~~g~~e~A~~v 260 (1017)
+..+|.+ +...+.+-|.....+++.+.-+.-+|+.+.|..-+++||...... ...+..-+.++...|+.+.||.-
T Consensus 59 Ld~AlE~-F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~D 137 (175)
T KOG4555|consen 59 LDGALEL-FGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARAD 137 (175)
T ss_pred hHHHHHH-HHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHh
Confidence 4445543 344456778888999999998888999999999999999876432 23444445555566777777777
Q ss_pred HHHHHHh
Q 001755 261 LARATHV 267 (1017)
Q Consensus 261 ~~rAl~~ 267 (1017)
|++|.++
T Consensus 138 Fe~AA~L 144 (175)
T KOG4555|consen 138 FEAAAQL 144 (175)
T ss_pred HHHHHHh
Confidence 7776663
No 297
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.19 Score=53.36 Aligned_cols=161 Identities=17% Similarity=0.059 Sum_probs=99.2
Q ss_pred HHHHHHH-HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001755 205 ENWHNYL-DFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 283 (1017)
Q Consensus 205 ~~W~~yl-~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e 283 (1017)
..|+..+ .++...++++.|.+..++. .+.+....=..++.+..+++-|++.++++.++. ...+..++|..+
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~aw 179 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAW 179 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHH
Confidence 3555553 3556677888876666652 334454555556666677888888888887742 333344333333
Q ss_pred H----HcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHH
Q 001755 284 E----QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 359 (1017)
Q Consensus 284 e----~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~ 359 (1017)
. -.+.+..|.-+|+....+..| .+.+....+.+...+|++++|..+++.++....+. +..++++...-.
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d------petL~Nliv~a~ 252 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKTPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD------PETLANLIVLAL 252 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcccCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHH
Confidence 2 335677888888886544344 47777888888888888888888888888877665 556666555433
Q ss_pred HhhCCHHH-HHHHHHHHhhhcCC
Q 001755 360 LVSRNAEK-ARQILVDSLDHVQL 381 (1017)
Q Consensus 360 ~~~g~~e~-Ar~i~~~al~~~P~ 381 (1017)
. .|...+ .-..+.+....+|.
T Consensus 253 ~-~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 253 H-LGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred H-hCCChHHHHHHHHHHHhcCCc
Confidence 3 444433 33344444444554
No 298
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=97.07 E-value=0.0012 Score=64.04 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=70.8
Q ss_pred cccccchHHHHHHhcc-----cChhhhhccccCCceEEEEcCCccccccchHHHHHHhhcCC-CcceeEEeeeccccCC-
Q 001755 569 AQVGSYFVGQYYQVLQ-----QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN-FTAIEIKTINSLGSWN- 641 (1017)
Q Consensus 569 ~~vg~~Fv~~YY~~l~-----~~p~~l~~fY~~~ss~~~~~g~~~~~~~~~~~I~~~i~~l~-~~~~~i~~~d~q~s~~- 641 (1017)
.++..-||+.||..|+ +-.+.|..||..++.++ |||+.+.+. ....+++.+.+ .+.|++.++||+..++
T Consensus 4 tq~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II-~Ng~Pi~~~---~~F~~~w~~~pv~TqH~L~s~D~H~IPGs 79 (166)
T PF10429_consen 4 TQIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKII-WNGTPIAQP---TAFQQTWQQQPVQTQHQLTSFDCHVIPGS 79 (166)
T ss_dssp CCCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEE-ETTEEES-H---HHHHHHHHCCS--EEEEEEEEEEEEETTT
T ss_pred chhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEE-ECCccCCCH---HHHHHHHHhCccceeeeeeeeeeeEeCCC
Confidence 4566789999999998 34456678877767765 899988666 34458888999 6789999999999874
Q ss_pred CceEEEEEEEEEecCCccccceeEEEEEEEe
Q 001755 642 GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 672 (1017)
Q Consensus 642 ~~ilv~V~G~~~~~~~~~~~~F~q~F~L~~~ 672 (1017)
|.++|.|+|.|..++. .+-+--|+..|...
T Consensus 80 gt~i~N~n~KVRFDEs-Grdk~G~~a~l~~~ 109 (166)
T PF10429_consen 80 GTFIINVNCKVRFDES-GRDKLGEDADLPQP 109 (166)
T ss_dssp TEEEEEEEEEEEEB-S-SB-TTS-B--TTS-
T ss_pred CeEEEeeeEEEEecCC-CCCCCCCceeeccc
Confidence 4488999999999876 45566777776554
No 299
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.0068 Score=60.97 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=71.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 001755 211 LDFIERDGDFNKVVKLYERCLIACANYPE-----YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 285 (1017)
Q Consensus 211 l~~e~~~g~~~~a~~lyeraL~~~p~~~~-----lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~ 285 (1017)
+.-+..+|+++.|..-|.+||..||.... ++.+-+.++.+++..+.|.+-..+|+++. |.+..+....|.++++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 33446678999999999999999987653 45555666666677777777777777754 6666666666777777
Q ss_pred cCCHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 001755 286 NGDIDGARAAYQLVHTETSPGLLEAIIKHAN 316 (1017)
Q Consensus 286 ~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~ 316 (1017)
...+++|..-|.+++ +++|...++.-..+.
T Consensus 181 ~ek~eealeDyKki~-E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 181 MEKYEEALEDYKKIL-ESDPSRREAREAIAR 210 (271)
T ss_pred hhhHHHHHHHHHHHH-HhCcchHHHHHHHHh
Confidence 777777777777765 456765544444333
No 300
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.03 E-value=0.0098 Score=67.96 Aligned_cols=68 Identities=13% Similarity=-0.017 Sum_probs=62.5
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001755 233 ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI---HLFAARFKEQNGDIDGARAAYQLVHT 301 (1017)
Q Consensus 233 ~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i---~l~~a~~ee~~g~~~~Ar~iy~~~~~ 301 (1017)
..|++++.|++++..+...|++++|...|++|+++. |++.+. |+++|.++..+|++++|++.|++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999965 888854 99999999999999999999999875
No 301
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.97 E-value=0.012 Score=57.04 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH----
Q 001755 309 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP---- 384 (1017)
Q Consensus 309 ~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~---- 384 (1017)
..++.-+.-..+.|++++|++.|+.+....|...-+ ...-+.++...++ .+++++|+..+++.|+++|.++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya---~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA---EQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc---HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 345555555566666666666666666666643322 1222233333334 66666666666666666666653
Q ss_pred -HHHHHHHHHhh----------CCChhHHHHHHHHHHHHhhcCCCCC
Q 001755 385 -LLEALIHFESI----------QSSPKQIDFLEQLVDKFLMSNSDSP 420 (1017)
Q Consensus 385 -lw~~~a~~E~~----------~~~~~~~~~ar~l~e~al~~~~~~~ 420 (1017)
+...++.++.. ..+......+..-|++.+...|++.
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 22233333321 1122335567777777777777764
No 302
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.96 E-value=0.0055 Score=55.42 Aligned_cols=77 Identities=19% Similarity=0.200 Sum_probs=59.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhc--CCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCccc----CeEEE
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQN--FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA----GRQVY 954 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~--~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~----g~~l~ 954 (1017)
++|-|+|||...|.++|.+++.. .|....+-+. .|-+++.+.|||||-|.+++.+.+-.+. +|..+. .+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLP-iDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLP-IDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEee-eeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999999999999998864 3444443333 3666778899999999999999988877 676664 34566
Q ss_pred EEecc
Q 001755 955 IEERR 959 (1017)
Q Consensus 955 Ve~~r 959 (1017)
|.+++
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66665
No 303
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.95 E-value=0.0013 Score=67.94 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=59.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 955 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~V 955 (1017)
..+.++|.|++..+.+.+|.++|.++|.+....+ ..+++||+|++.+++..||.. ++..+.|+.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh---------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3589999999999999999999999999954221 357999999999999999998 799999999999
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.036 Score=57.67 Aligned_cols=195 Identities=14% Similarity=0.072 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhhhHhhhh-----ccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHHH
Q 001755 171 MYKKAKEFDSKIIGFETAI-----RRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPEY 240 (1017)
Q Consensus 171 ~y~~~~~~~~~~~~fE~~I-----~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~-----p~~~~l 240 (1017)
-|+..+.+.+..-.+++++ .|..||.- ..+..-+.+..+...+.+++.+|++|.... |.-...
T Consensus 40 afRnAk~feKakdcLlkA~~~yEnnrslfhAA-------KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAA-------KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcccHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 4556666666655566666 23333332 234444445555566778888999887653 333333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hcCCCcHHH
Q 001755 241 WIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHT-----ETSPGLLEA 310 (1017)
Q Consensus 241 W~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~-----~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~-----~l~P~~~~~ 310 (1017)
=+.-+.=+.++.+.+.|..+|+|++.++.-. -.+++-..++++.+...+++|-..+.+-.. +..+.....
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~ 192 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKA 192 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHH
Confidence 3333333444568999999999999876332 123344457888888888887777765311 124555566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 001755 311 IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 376 (1017)
Q Consensus 311 ~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al 376 (1017)
++..+-++.-..++-.|..+|+...++..-. .+. ......++..+ +. .||.+...+++..-+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~-~se-d~r~lenLL~a-yd-~gD~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFL-KSE-DSRSLENLLTA-YD-EGDIEEIKKVLSSPT 254 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCcccc-ChH-HHHHHHHHHHH-hc-cCCHHHHHHHHcChH
Confidence 6666666666778889999988866554311 110 02233344444 44 788888887765443
No 305
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.016 Score=58.38 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=82.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 001755 245 VLCMEASGSMDLAHNALARATHVFVKRLP-----EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 319 (1017)
Q Consensus 245 a~~l~~~g~~e~A~~v~~rAl~~~~p~~~-----~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~ 319 (1017)
+.-+...|++++|..-|.+||.++ |..+ -++.+.|....+++..+.|+.-..+++ +++|.+..++.+++.++.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai-el~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI-ELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH-hcCchhHHHHHHHHHHHH
Confidence 445567899999999999999965 5432 345566888889999999999999987 689999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhcCC
Q 001755 320 RLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 320 r~g~~e~A~~iye~al~~~~~~ 341 (1017)
+...++.|+.-|++.++..|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 9999999999999999999875
No 306
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.91 E-value=0.31 Score=59.45 Aligned_cols=171 Identities=12% Similarity=0.046 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCh-HHHHHHHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-EIHLFAARFK 283 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~-~i~l~~a~~e 283 (1017)
.....+-.++.+.+.+++|..+|||++..+|. .++.+.|-..+.+.+++..-..+--+.-+.+ |+.+ .+|.-...+.
T Consensus 78 ~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~-pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 78 LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNF-PKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHH
Confidence 34444455667888999999999999999999 9999998888888777766555544444445 5543 4444444444
Q ss_pred HHcCCH---------HHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHH
Q 001755 284 EQNGDI---------DGARAAYQLVHTETSP-GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 353 (1017)
Q Consensus 284 e~~g~~---------~~Ar~iy~~~~~~l~P-~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~ 353 (1017)
...... .-|.+..++.+.+-.+ ....-..-|.-++..+|.+++|..++..-+...-.... ..+...
T Consensus 156 qs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~----~~l~~~ 231 (932)
T KOG2053|consen 156 QSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN----LYLENK 231 (932)
T ss_pred HhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc----hHHHHH
Confidence 333222 2255666665532101 12222344445667789999999999554443322211 223333
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhhcCCC
Q 001755 354 YSRFLHLVSRNAEKARQILVDSLDHVQLS 382 (1017)
Q Consensus 354 ~a~~l~~~~g~~e~Ar~i~~~al~~~P~~ 382 (1017)
-..++.. ++++.+-.++..+++...+++
T Consensus 232 ~~dllk~-l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 232 KLDLLKL-LNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHH-hcChHHHHHHHHHHHHhCCcc
Confidence 3445444 999999999999999999998
No 307
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.89 E-value=0.00077 Score=77.75 Aligned_cols=80 Identities=23% Similarity=0.361 Sum_probs=72.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
...+|||+|||..++++.++++...||.++...+ +.+..+|.++||||.+|.+......|+.. ||..+++++|.|..+
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l-v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL-VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhhee-ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3579999999999999999999999999998764 67888899999999999999999999988 899999999999876
Q ss_pred cC
Q 001755 959 RP 960 (1017)
Q Consensus 959 r~ 960 (1017)
-.
T Consensus 367 ~~ 368 (500)
T KOG0120|consen 367 IV 368 (500)
T ss_pred hc
Confidence 53
No 308
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.89 E-value=0.0025 Score=59.02 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=42.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---C---CCcccCeEEE
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---S---PIQLAGRQVY 954 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~---~---~~~i~g~~l~ 954 (1017)
|..|+|.|++..++.++|+++|++||.|..|++.. +-.-|||-|.+.++|+.|+.. . +..|.+..+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 36789999999999999999999999999876421 224799999999999999875 3 5677777766
Q ss_pred EE
Q 001755 955 IE 956 (1017)
Q Consensus 955 Ve 956 (1017)
++
T Consensus 74 ~~ 75 (105)
T PF08777_consen 74 LE 75 (105)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 309
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.87 E-value=0.0027 Score=55.29 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=56.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCc-cCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc
Q 001755 305 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 305 P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~-~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~ 379 (1017)
|+...++..++.++.++|++++|+..|+++++....... ......++..++.+... .|++++|.++|+++++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 345677889999999999999999999999988432211 11235566778888666 999999999999999753
No 310
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=96.86 E-value=0.01 Score=55.73 Aligned_cols=113 Identities=23% Similarity=0.256 Sum_probs=81.7
Q ss_pred cchHHHHHHhcc-cChhhhhccccCCceEEEEcCC-ccccccchHHHHHHhhcCCC---cce-eEEeeeccccCC-CceE
Q 001755 573 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGD-STESASSMLDIHSLVISLNF---TAI-EIKTINSLGSWN-GGVL 645 (1017)
Q Consensus 573 ~~Fv~~YY~~l~-~~p~~l~~fY~~~ss~~~~~g~-~~~~~~~~~~I~~~i~~l~~---~~~-~i~~~d~q~s~~-~~il 645 (1017)
..|+..||..|+ .+++.|..||.+++.+....+. ......+..+|.+.+..+.. ... .+.+++.+...+ ....
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 468999999997 7888898999888888643331 01222445566688877763 223 357888777543 3466
Q ss_pred EEEEEEEEecC--CccccceeEEEEEEEeCCeEEEEcceEEe
Q 001755 646 VMVSGSVKTKE--FCRRRKFVQTFFLAPQEKGYFVLNDIFHF 685 (1017)
Q Consensus 646 v~V~G~~~~~~--~~~~~~F~q~F~L~~~~~~y~V~nDifr~ 685 (1017)
+.+.+.+.... ....+.|.++|.+...+++|.|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence 77778887665 23567899999999999999999999886
No 311
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.81 E-value=0.12 Score=56.54 Aligned_cols=230 Identities=14% Similarity=0.086 Sum_probs=142.9
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC-C----hHHHHHHHHHHH
Q 001755 215 ERDGDFNKVVKLYERCLIACANYP-----EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-L----PEIHLFAARFKE 284 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~-----~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~-~----~~i~l~~a~~ee 284 (1017)
+...++.+++.+-.-++..-...+ ......+..+...+.++.+.+.|+.|+.+.... + -.+...++.+.-
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 333445555555555554432222 233445555556677899999999998865222 2 235666788888
Q ss_pred HcCCHHHHHHHHHHHhhhcC---CC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHH
Q 001755 285 QNGDIDGARAAYQLVHTETS---PG------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 355 (1017)
Q Consensus 285 ~~g~~~~Ar~iy~~~~~~l~---P~------~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a 355 (1017)
+..++++|.-...+++.-.+ -+ ...+.+.++..++.+|.+-.|.+..+++.++.-..-+.......+..++
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88999998766666542111 01 2335666777788899999999999999887653322222344556678
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH
Q 001755 356 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF 435 (1017)
Q Consensus 356 ~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~ 435 (1017)
++ ++..|+.|.|..-|+.|...- ..+=..+.++|...+-.+-++..|..+ + .-+... .++-.+.
T Consensus 254 DI-yR~~gd~e~af~rYe~Am~~m---~~~gdrmgqv~al~g~Akc~~~~r~~~-k-----~~~Cra------le~n~r~ 317 (518)
T KOG1941|consen 254 DI-YRSRGDLERAFRRYEQAMGTM---ASLGDRMGQVEALDGAAKCLETLRLQN-K-----ICNCRA------LEFNTRL 317 (518)
T ss_pred HH-HHhcccHhHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHhh-c-----ccccch------hHHHHHH
Confidence 88 555999999999999998643 345567777776544332222222221 1 011111 3466777
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhcC
Q 001755 436 LEFLGLFGDAQLIKKAEDRHARLFL 460 (1017)
Q Consensus 436 l~fe~~~Gd~~~~~~~~~r~~~~~~ 460 (1017)
++.....|..-.+.++.=|....+.
T Consensus 318 levA~~IG~K~~vlK~hcrla~iYr 342 (518)
T KOG1941|consen 318 LEVASSIGAKLSVLKLHCRLASIYR 342 (518)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 8888888888788888777766663
No 312
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.32 Score=52.08 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHhhcCC------
Q 001755 202 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA----LARATHVFVKR------ 271 (1017)
Q Consensus 202 ~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v----~~rAl~~~~p~------ 271 (1017)
+..+.-++.+.+..+.|+++.|++-|..|++....++-+-+..+.++.+.++++.|.+. .+|.++-+ |.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~H-PElgIGm~ 220 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQH-PELGIGMT 220 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcC-CccCccce
Confidence 55667778888888999999999999999999999999999999999999999888765 45555433 32
Q ss_pred ----------Ch---------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 272 ----------LP---------EIHLFAARFKEQNGDIDGARAAYQL 298 (1017)
Q Consensus 272 ----------~~---------~i~l~~a~~ee~~g~~~~Ar~iy~~ 298 (1017)
++ +....-+.++.+.++++.|++.+..
T Consensus 221 tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 221 TEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred eccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 00 1122347788899999999998763
No 313
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.78 E-value=0.18 Score=57.14 Aligned_cols=174 Identities=16% Similarity=0.078 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhcCCChHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIA----CANYPEYWIRYVLCMEA---SGSMDLAHNALARATHVFVKRLPEIHL 277 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~----~p~~~~lW~~ya~~l~~---~g~~e~A~~v~~rAl~~~~p~~~~i~l 277 (1017)
++-++++--+....+++.++.|.|..-.. .+....+-..||..+.+ .|+.++|+.++..++......+++++-
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 56667776677778899999999987665 46677888899999998 899999999999977655567889998
Q ss_pred HHHHHHHHc---------CCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhhcCCCcc
Q 001755 278 FAARFKEQN---------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED----AFSLYEQAIAIEKGKEHS 344 (1017)
Q Consensus 278 ~~a~~ee~~---------g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~----A~~iye~al~~~~~~~~~ 344 (1017)
.+++++... ...++|...|.++.. +.|+ .-.=++++.++...|...+ .+.+--+.-.........
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE-IEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc-CCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 888887543 357889999999874 5665 3344666667766664322 223221111111111101
Q ss_pred CcHHHHH--HHHHHHHHHhhCCHHHHHHHHHHHhhhcCC
Q 001755 345 QTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQL 381 (1017)
Q Consensus 345 ~~~~~l~--~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~ 381 (1017)
......| ..++..... .|++++|...++++++..|.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCc
Confidence 1112233 234444334 89999999999999988754
No 314
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.12 Score=55.16 Aligned_cols=191 Identities=16% Similarity=0.144 Sum_probs=102.5
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHH
Q 001755 216 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 295 (1017)
Q Consensus 216 ~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~i 295 (1017)
...+++.++.+..--++..|.+-.-.-.++-++....++..|..+|++.+.++ |+.....+.+|.-+.+.+.+..|.++
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34455556666665566666555555555555555556777777777777654 66666666667777777777777766
Q ss_pred HHHHhhhcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001755 296 YQLVHTETSPGLLEA-IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 374 (1017)
Q Consensus 296 y~~~~~~l~P~~~~~-~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~ 374 (1017)
...+.. +|....- ...-+.+....+++--++.+.++. ++... ....+..+-++++ .|++++|.+-|+.
T Consensus 101 ~~~~~D--~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~----Ad~~in~gCllyk-egqyEaAvqkFqa 169 (459)
T KOG4340|consen 101 AFLLLD--NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENE----ADGQINLGCLLYK-EGQYEAAVQKFQA 169 (459)
T ss_pred HHHhcC--CHHHHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCc----cchhccchheeec-cccHHHHHHHHHH
Confidence 665431 1221111 111122333445666666655432 22111 2234444555566 7777777777777
Q ss_pred HhhhcCCCHH--HHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001755 375 SLDHVQLSKP--LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 375 al~~~P~~~~--lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~ 419 (1017)
+++.-.-++- +-+.++++-..+- ..-++.+-++++|.++..|+-
T Consensus 170 AlqvsGyqpllAYniALaHy~~~qy-asALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSSRQY-ASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhhhhH-HHHHHHHHHHHHhhhhcCCcc
Confidence 7765554443 2234444433321 123455566666666655553
No 315
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.77 E-value=0.29 Score=54.31 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=139.2
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHH--HHHH--HHcCC
Q 001755 215 ERDGDFNKVVKLYERCLIACANYPEYWIRYVL--CMEASGSMDLAHNALARATHVFVKRLPEIHLFA--ARFK--EQNGD 288 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~--~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~--a~~e--e~~g~ 288 (1017)
--.||-..++++-.|+-.....+.+-.+++.. .-+-.|+++.|+.-|+-.+. +|+..+.= +.++ ++.|.
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc
Confidence 34578888999998887666666666666544 33447999999999987765 34444431 2222 47799
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCc--cCcHHHHHHHHHHHHHHhhCCHH
Q 001755 289 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLHLVSRNAE 366 (1017)
Q Consensus 289 ~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~--~~~~~~l~~~~a~~l~~~~g~~e 366 (1017)
.+.|+..-+++. +..|...-+|.......+..|+.+.|+++.+.......-... ......|+. ++......-+..
T Consensus 170 reaAr~yAe~Aa-~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt--AkA~s~ldadp~ 246 (531)
T COG3898 170 REAARHYAERAA-EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT--AKAMSLLDADPA 246 (531)
T ss_pred HHHHHHHHHHHH-hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH--HHHHHHhcCChH
Confidence 999999999987 468988888887777778889999999999877664431111 111122221 222222356789
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHH
Q 001755 367 KARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLE 437 (1017)
Q Consensus 367 ~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~ 437 (1017)
.||..-..+++..|+-...-...+......++. .+.-+++|.+-+..|.- .||..|..
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~---rKg~~ilE~aWK~ePHP----------~ia~lY~~ 304 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNL---RKGSKILETAWKAEPHP----------DIALLYVR 304 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccch---hhhhhHHHHHHhcCCCh----------HHHHHHHH
Confidence 999999999999999887666666555555444 66788999998887652 26766654
No 316
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.11 Score=54.58 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=112.9
Q ss_pred CcchHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-
Q 001755 200 SVTELENWHNYLDF--------IERDGDFNKVVKLYERCLIAC-ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 269 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~--------e~~~g~~~~a~~lyeraL~~~-p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~- 269 (1017)
+...+..|.+.+.+ ..-.+.+.-...+|...+..+ +..+.+--.++..-.+.|+.+.|...|++.-+...
T Consensus 165 ~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k 244 (366)
T KOG2796|consen 165 EESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK 244 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 34556788876543 344566767778899998887 77888889999999999999999999996544221
Q ss_pred ----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 270 ----KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 270 ----p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
...-.++.+.+.++.-.+++..|...|.+++ ..+|.++.+....+-++.-+|+...|.+.++.++...|..
T Consensus 245 L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~-~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 245 LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL-RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhccchhHHHHhhhhhheecccchHHHHHHHhhcc-ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 1245667777888888899999999999976 4688888888888888888999999999999999999875
No 317
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.033 Score=59.54 Aligned_cols=104 Identities=17% Similarity=0.088 Sum_probs=85.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHH
Q 001755 280 ARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 356 (1017)
Q Consensus 280 a~~ee~~g~~~~Ar~iy~~~~~~l~P~~---~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~ 356 (1017)
|.-+...|++..|...|..-+ ...|+. ..+++=+++.....|+++.|..+|.++++..|.... .+..+++++.
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi-~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K---ApdallKlg~ 223 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFI-KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK---APDALLKLGV 223 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC---ChHHHHHHHH
Confidence 333446799999999999965 447764 446677788889999999999999999999887533 3788999999
Q ss_pred HHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHH
Q 001755 357 FLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 388 (1017)
Q Consensus 357 ~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~ 388 (1017)
.+.+ +|+.++|+..|+.+++..|+....-..
T Consensus 224 ~~~~-l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGR-LGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHH-hcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9888 999999999999999999998765443
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.75 E-value=0.11 Score=53.19 Aligned_cols=182 Identities=13% Similarity=0.039 Sum_probs=112.0
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHH
Q 001755 214 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 293 (1017)
Q Consensus 214 e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar 293 (1017)
+...|-..-|+.-|.++|.+.|..+++..-++.++...|+++.|.++|+-.+++. |...-.+++.+..+.--|++.-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhH
Confidence 3444555567778899999999999999999999999999999999999999865 777777777766555668888888
Q ss_pred HHHHHHhhhcCCCcH--HHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHH
Q 001755 294 AAYQLVHTETSPGLL--EAIIKHANMERRLGNLEDAF-SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ 370 (1017)
Q Consensus 294 ~iy~~~~~~l~P~~~--~~~~~~a~~e~r~g~~e~A~-~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~ 370 (1017)
+-+..-+.. +|+++ .+|+-+. |.++ +..+|+ .+.+|+.....+. |-.. +..+. +|.+.+ ..
T Consensus 154 ~d~~~fYQ~-D~~DPfR~LWLYl~--E~k~-dP~~A~tnL~qR~~~~d~e~------WG~~--iV~~y---LgkiS~-e~ 217 (297)
T COG4785 154 DDLLAFYQD-DPNDPFRSLWLYLN--EQKL-DPKQAKTNLKQRAEKSDKEQ------WGWN--IVEFY---LGKISE-ET 217 (297)
T ss_pred HHHHHHHhc-CCCChHHHHHHHHH--HhhC-CHHHHHHHHHHHHHhccHhh------hhHH--HHHHH---HhhccH-HH
Confidence 877776543 66643 3454443 2333 444444 4556665554332 1111 11111 333321 23
Q ss_pred HHHHHhhhcCCCHH-------HHHHHHHHHhhCCChhHHHHHHHHHHHHhhc
Q 001755 371 ILVDSLDHVQLSKP-------LLEALIHFESIQSSPKQIDFLEQLVDKFLMS 415 (1017)
Q Consensus 371 i~~~al~~~P~~~~-------lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~ 415 (1017)
+++++....-++.. .+.-++....+.|.. +.+..+|+-++.-
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~---~~A~~LfKLaian 266 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDL---DEATALFKLAVAN 266 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHH
Confidence 44444443333332 333444444555544 7788888887653
No 319
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.74 E-value=0.0028 Score=65.93 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=49.2
Q ss_pred HHHHHHHh-cCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 896 FEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 896 ~~L~~~F~-~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
++|...|+ +||+|+.+. |.++..-..+|-++|.|...++|++|++. |+-.++|++|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~--Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELN--VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhh--hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444445 999999853 56666667789999999999999999998 899999999988653
No 320
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.71 E-value=0.093 Score=60.26 Aligned_cols=162 Identities=12% Similarity=0.062 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----c-------C--CC-----------c
Q 001755 252 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE----T-------S--PG-----------L 307 (1017)
Q Consensus 252 g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~----l-------~--P~-----------~ 307 (1017)
.+...-.+.-++||++. |+|++.|+.+|. +....+.+|.++|++++.. + + +. .
T Consensus 182 Rnp~aRIkaA~eALei~-pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEIN-PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhh-hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 45556666677899865 999999998875 3445677778777765321 0 0 00 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhh-cCCCHHHH
Q 001755 308 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-VQLSKPLL 386 (1017)
Q Consensus 308 ~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~-~P~~~~lw 386 (1017)
.-+-.+++.+.+++|+.++|++.|+..++..+.... ..+...+..++.. .+.+.++.+++.+-=+. .|.+..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~----l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN----LNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch----hhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHH
Confidence 223456788899999999999999999988875422 4566777888777 99999999999986443 46666644
Q ss_pred HHHHHHHhh-CCC------------hhHHHHHHHHHHHHhhcCCCCCC
Q 001755 387 EALIHFESI-QSS------------PKQIDFLEQLVDKFLMSNSDSPS 421 (1017)
Q Consensus 387 ~~~a~~E~~-~~~------------~~~~~~ar~l~e~al~~~~~~~~ 421 (1017)
..-+.+... .++ ......+.+.+.||++-+|..+.
T Consensus 334 YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 334 YTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 444443321 111 11224567788899999888764
No 321
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.69 E-value=0.0027 Score=44.75 Aligned_cols=32 Identities=34% Similarity=0.660 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001755 218 GDFNKVVKLYERCLIACANYPEYWIRYVLCME 249 (1017)
Q Consensus 218 g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~ 249 (1017)
|+.++++.+|+|+|..+|.+..+|+.|+.++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 46788999999999999999999999998864
No 322
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.051 Score=58.57 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=95.5
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHH--HHHHHHHHHcCCHHHH
Q 001755 215 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH--LFAARFKEQNGDIDGA 292 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~--l~~a~~ee~~g~~~~A 292 (1017)
.+.|++..+..+|..++...|.+.++-+.|+.++...|+.+.|..+|...=.-. .....+ ..+..++++..+..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHHHHhcCCCH
Confidence 567899999999999999999999999999999999999999999997522111 122222 2346677777666665
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 293 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 293 r~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
..+=.++ . .+|++.++-+.++..+...|+.++|.+.|-..+....+.
T Consensus 223 ~~l~~~~-a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 223 QDLQRRL-A-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHHH-H-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 5555553 2 499999999999999999999999988887777665543
No 323
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.61 E-value=0.14 Score=54.47 Aligned_cols=165 Identities=10% Similarity=-0.040 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH-HH
Q 001755 308 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP-LL 386 (1017)
Q Consensus 308 ~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~-lw 386 (1017)
...|+.-+.-+.+.|++++|...|+++....|....+ ....+.++-..++ .++++.|+...++.+..+|.+++ -|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~---~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS---EQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---HHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhH
Confidence 5567777777788888888888888888877765433 3333334444456 88888888888888888888876 33
Q ss_pred HHHHHHHh---hCCC----hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH--------HHHHhhCCHHHHHHH
Q 001755 387 EALIHFES---IQSS----PKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL--------EFLGLFGDAQLIKKA 451 (1017)
Q Consensus 387 ~~~a~~E~---~~~~----~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l--------~fe~~~Gd~~~~~~~ 451 (1017)
..|+.-.. .+.. ......+..-|+..|...|++.-..+...|+.....-+ .|..+.|..-.+..-
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR 189 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINR 189 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 33333322 2221 11244556666778888888765445555554332222 456677877777777
Q ss_pred HHHHHHhcCCCCCchhhhhcchhhh
Q 001755 452 EDRHARLFLPHRSTSELRKRHAEDF 476 (1017)
Q Consensus 452 ~~r~~~~~~~~~~~~~~kkr~~~~~ 476 (1017)
.++.++.+++.....++..+-.+.-
T Consensus 190 ~~~v~e~y~~t~~~~eaL~~l~eaY 214 (254)
T COG4105 190 FEEVLENYPDTSAVREALARLEEAY 214 (254)
T ss_pred HHHHHhccccccchHHHHHHHHHHH
Confidence 7788888888776666666665443
No 324
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.52 Score=49.39 Aligned_cols=124 Identities=19% Similarity=0.138 Sum_probs=70.5
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh------hhcCCCHHHHHHHHHHH
Q 001755 320 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL------DHVQLSKPLLEALIHFE 393 (1017)
Q Consensus 320 r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al------~~~P~~~~lw~~~a~~E 393 (1017)
..-+.+.|+.+|.+++.........+.-..++-+.++.+.+ ...+++|-..+.+-. +..++....++..+-+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 45677889999999998877655444445667777777777 777777766555432 23344444555544443
Q ss_pred hhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 001755 394 SIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAED 453 (1017)
Q Consensus 394 ~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~ 453 (1017)
.-. .+...++.++...-+. | ..+.+++-..+ +.+|.+.+ -||++.+.++..
T Consensus 201 L~~---~Dyv~aekc~r~~~qi-p---~f~~sed~r~l-enLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 201 LYA---HDYVQAEKCYRDCSQI-P---AFLKSEDSRSL-ENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred hhH---HHHHHHHHHhcchhcC-c---cccChHHHHHH-HHHHHHhc-cCCHHHHHHHHc
Confidence 332 2345566776654322 2 22333333332 23333332 368888887764
No 325
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.0077 Score=52.35 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIAC-------ANYPEYWIRYVLCMEASGSMDLAHNALARATHV 267 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~-------p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~ 267 (1017)
..+..++..+...|++++|+..|++||... +.....+..++.++...|++++|+++|++|+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455666666666666666666666666542 112334555566666666666666666666654
No 326
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.49 E-value=0.0029 Score=45.58 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 001755 226 LYERCLIACANYPEYWIRYVLCMEASGSMDLAH 258 (1017)
Q Consensus 226 lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~ 258 (1017)
+|+|||+.+|++.+.|+.|+.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 377888888888888888888888888887775
No 327
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.23 Score=51.64 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=84.4
Q ss_pred CChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHH
Q 001755 218 GDFNKVVKLYERCLIACAN------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 291 (1017)
Q Consensus 218 g~~~~a~~lyeraL~~~p~------~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~ 291 (1017)
+.+++|..+|+||-..... --+.+...+.++.+.|+-..|-..|-.|-..+ +..+..+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy----------------kk~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY----------------KKVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh----------------hccChHH
Confidence 3577787888777443321 12233444555555555555554444444322 2235555
Q ss_pred HHHHHHHHhhhcCCC------cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCC
Q 001755 292 ARAAYQLVHTETSPG------LLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 364 (1017)
Q Consensus 292 Ar~iy~~~~~~l~P~------~~~~~~~~a~~e~-r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~ 364 (1017)
|..++++++. +..+ -...++..+.++. .+.++++|+..|+.+-+...+.+........+++-|.+-.. +++
T Consensus 92 Av~cL~~aie-Iyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~-leq 169 (288)
T KOG1586|consen 92 AVNCLEKAIE-IYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ-LEQ 169 (288)
T ss_pred HHHHHHHHHH-HHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH-HHH
Confidence 5555554421 1110 0112334455433 44788999999999998888765433334556666666555 888
Q ss_pred HHHHHHHHHHHhhhcCCCH
Q 001755 365 AEKARQILVDSLDHVQLSK 383 (1017)
Q Consensus 365 ~e~Ar~i~~~al~~~P~~~ 383 (1017)
+.+|..+|++....--++.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 9999999999877554444
No 328
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.47 E-value=0.36 Score=51.39 Aligned_cols=172 Identities=14% Similarity=0.117 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHH-HHHH
Q 001755 204 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI-HLFA 279 (1017)
Q Consensus 204 l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~---~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i-~l~~ 279 (1017)
...|.+=+.-+.+.|+++.|+..|++.....|..+ ..-+.++-...+.++++.|+..++|-+.++ |.++.+ |..+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHHH
Confidence 45566666666666777777777777766655433 445555555556667777777777777655 544332 2222
Q ss_pred HHHHHHcC-------CHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCcc---C----
Q 001755 280 ARFKEQNG-------DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS---Q---- 345 (1017)
Q Consensus 280 a~~ee~~g-------~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~---~---- 345 (1017)
...+...- +...++ +|..-|+..+...|+..=. .
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~--------------------------------~A~~~f~~~i~ryPnS~Ya~dA~~~i~ 160 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAAR--------------------------------AAFAAFKELVQRYPNSRYAPDAKARIV 160 (254)
T ss_pred HHHHHHhccCCccccCHHHHH--------------------------------HHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 22222111 111122 2233333333333322100 0
Q ss_pred ----cHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHh---hCCChhHHHHHHHHH
Q 001755 346 ----TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES---IQSSPKQIDFLEQLV 409 (1017)
Q Consensus 346 ----~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~---~~~~~~~~~~ar~l~ 409 (1017)
.+...-...++|..+ .|.+..|..-++..++..|+.......++.++. ..|..+..+.+.+++
T Consensus 161 ~~~d~LA~~Em~IaryY~k-r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 161 KLNDALAGHEMAIARYYLK-RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 001122345667666 999999999999999999998876666666553 345443344444444
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.46 E-value=0.01 Score=64.04 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=72.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 001755 245 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 324 (1017)
Q Consensus 245 a~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~ 324 (1017)
+.-+.++|.+++|..+|.+++.+. |.++-++.+.|..+.++..+.-|..-...++ .|+..+..+|.+++..-..+|++
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-aLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI-ALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHhhH
Confidence 444556677777777777777644 6677777777777777777777777666655 46777788888888888889999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 001755 325 EDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 325 e~A~~iye~al~~~~~~ 341 (1017)
++|.+-|+++|.+.|..
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 99999999999998875
No 330
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.44 E-value=0.0052 Score=43.30 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHh
Q 001755 363 RNAEKARQILVDSLDHVQLSKPLLEALIHFES 394 (1017)
Q Consensus 363 g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~ 394 (1017)
|+.++||.+|++++..+|.+..+|..|++||.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 57899999999999999999999999999985
No 331
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.42 E-value=0.0045 Score=62.62 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=49.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcc
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 948 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i 948 (1017)
-..+|||.||..+++|++|+.+|+.|--...++ ++.+ . +-+.|||+|++.+.+..|+.. .|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~--~~~~-~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILK--IRAR-G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEE--EecC-C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 356899999999999999999999998776543 3443 2 346899999998888888765 34443
No 332
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.42 E-value=0.094 Score=50.93 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCH
Q 001755 363 RNAEKARQILVDSLDHVQLSK 383 (1017)
Q Consensus 363 g~~e~Ar~i~~~al~~~P~~~ 383 (1017)
+...+|+.-|++.+...|++.
T Consensus 113 ~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 113 TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHHHCcCCh
Confidence 346788888888888888875
No 333
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.40 E-value=0.028 Score=56.33 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001755 363 RNAEKARQILVDSLDHVQLSKPLLEAL 389 (1017)
Q Consensus 363 g~~e~Ar~i~~~al~~~P~~~~lw~~~ 389 (1017)
.-+++|..+|++|+..+|.+..++..+
T Consensus 94 ~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 94 EYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 346788899999999999876555443
No 334
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.39 E-value=0.022 Score=70.02 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=46.7
Q ss_pred EEEEe-cCCCCCCHHHHHHHHhcCCCeeEeeE---EeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 883 SVYVR-NLPSTVTAFEIEEEFQNFGRIKPDGV---FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 883 ~l~V~-nl~~~~t~~~L~~~F~~~G~i~~v~i---~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
++||. +--..++..+|-.++..-+.|..-.| .+. ..|.||+-.. +.+...+.. ++..+.|+.|.|+.
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 559 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQL 559 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcCh-hhHHHHHHHhccccccCCceEEEE
Confidence 44442 22457888889888876665543221 222 2488999854 456777776 58899999999998
Q ss_pred cc
Q 001755 958 RR 959 (1017)
Q Consensus 958 ~r 959 (1017)
.+
T Consensus 560 ~~ 561 (629)
T PRK11634 560 LG 561 (629)
T ss_pred CC
Confidence 65
No 335
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.27 Score=53.14 Aligned_cols=164 Identities=13% Similarity=0.094 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001755 222 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 301 (1017)
Q Consensus 222 ~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~ 301 (1017)
.++...++.+.. -.+.-+.-+.-+...+++.+|...|..++... |.+.++-+.++..+...|+.+.|..+|..+-.
T Consensus 121 qlr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 121 QLRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344445554433 22233333444455789999999999999865 88899999999999999999999999998533
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCC
Q 001755 302 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 381 (1017)
Q Consensus 302 ~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~ 381 (1017)
+..-+.......++.++.+..+..+... +++.+...|++ ..+.+.+|..+.. .|+.+.|.+.+-..|+++-.
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~-l~~~~aadPdd------~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQD-LQRRLAADPDD------VEAALALADQLHL-VGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccc
Confidence 2221112222345667777666555444 45556667765 5678888888666 99999999999999987655
Q ss_pred CH--HHHHHHHHHHhhCC
Q 001755 382 SK--PLLEALIHFESIQS 397 (1017)
Q Consensus 382 ~~--~lw~~~a~~E~~~~ 397 (1017)
.. ..-..++++....+
T Consensus 269 ~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 269 FEDGEARKTLLELFEAFG 286 (304)
T ss_pred ccCcHHHHHHHHHHHhcC
Confidence 33 36666666665555
No 336
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.38 E-value=0.18 Score=57.52 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcC-------
Q 001755 236 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETS------- 304 (1017)
Q Consensus 236 ~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p---~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~-~l~------- 304 (1017)
.....|+.++.+..+.|.++.|..++.++...... ..+.+.+..|+++...|+..+|...++..+. .+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 44567777777777777777777777776653311 1566777777777777777777777766543 111
Q ss_pred -------------------------CCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhcCCCccCcHHHHHHH
Q 001755 305 -------------------------PGLLEAIIKHANMERRL------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 353 (1017)
Q Consensus 305 -------------------------P~~~~~~~~~a~~e~r~------g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~ 353 (1017)
.....+++.++.+.... +..+.+...|..++...+.. ...|..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW------EKAWHS 297 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH------HHHHHH
Confidence 01234567777777777 88899999999999988765 446666
Q ss_pred HHHHHHH
Q 001755 354 YSRFLHL 360 (1017)
Q Consensus 354 ~a~~l~~ 360 (1017)
|+.+..+
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 7766444
No 337
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.35 E-value=0.02 Score=49.42 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=45.9
Q ss_pred cEEEEecCCCCCCHHH----HHHHHhcCCC-eeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEE
Q 001755 882 KSVYVRNLPSTVTAFE----IEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 955 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~----L~~~F~~~G~-i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~V 955 (1017)
..|||.|||.+.+... |++++..||- |.. + ..|.|+|-|.+++.|.+|.+. +|-++-|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~----v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS----V-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE----E-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 4689999999988765 5677778874 432 2 237899999999999999988 799999999999
Q ss_pred EeccC
Q 001755 956 EERRP 960 (1017)
Q Consensus 956 e~~r~ 960 (1017)
.+...
T Consensus 72 ~~~~~ 76 (90)
T PF11608_consen 72 SFSPK 76 (90)
T ss_dssp ESS--
T ss_pred EEcCC
Confidence 98743
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.81 Score=47.71 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH------H
Q 001755 168 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL-ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------Y 240 (1017)
Q Consensus 168 ~~~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l-~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~------l 240 (1017)
-..+|+-.+.+...=..|.++-. +|.+.-+.++. ..+..-... .+.++.++|+.++++++.+...--. .
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~---~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~ 115 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAAD---LHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKH 115 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH---HHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 34677777776666666777653 23332333333 233333333 4556899999999999988754443 3
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHH----
Q 001755 241 WIRYVLCMEA-SGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA---- 310 (1017)
Q Consensus 241 W~~ya~~l~~-~g~~e~A~~v~~rAl~~~~p~-----~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~---- 310 (1017)
.+.++.+++. ..+++.|...|+.|.+-+-.. -....+..|.+--..+++.+|+++|+.+.....-+.+.-
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 4578888887 478999999999998855221 234566778888888999999999998754322222221
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccC
Q 001755 311 --IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 345 (1017)
Q Consensus 311 --~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~ 345 (1017)
+++-+-++....+.-.+...+++..+..|.-.+++
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 23333334444677777888888888888765543
No 339
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.32 E-value=0.65 Score=56.81 Aligned_cols=123 Identities=15% Similarity=0.013 Sum_probs=96.8
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHH
Q 001755 216 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 295 (1017)
Q Consensus 216 ~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~i 295 (1017)
..+++..|....++.+...|+...+-.--+..+.+.|+.++|..+++ ++....+.+......+-.++..++.+++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45788899999999999999998888888888999999999997775 55544455666666778888999999999999
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 296 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 296 y~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
|++++. .+|+ .+..+.+...+.|.+++.+-+++=-+.-+..|.+
T Consensus 100 Ye~~~~-~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 100 YERANQ-KYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred HHHHHh-hCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999874 5998 8888888888888888865444433333355554
No 340
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.26 Score=51.97 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=103.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---c--CCCcHHHHHHHHH
Q 001755 242 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE---T--SPGLLEAIIKHAN 316 (1017)
Q Consensus 242 ~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~---l--~P~~~~~~~~~a~ 316 (1017)
+.|+.++.-.+.+......+.+.++...+..+.+...++++-.+.|+++.|...|+++-.. + ......+..+.+-
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 5677788878888889999999999776788999999999999999999999999964221 1 1233456666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCH
Q 001755 317 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 383 (1017)
Q Consensus 317 ~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~ 383 (1017)
++.-..|+..|-..|.+++..++.+. .....-|-.+. ..|+...|.+..+.++...|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~------~a~NnKALcll-Ylg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNA------VANNNKALCLL-YLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred heecccchHHHHHHHhhccccCCCch------hhhchHHHHHH-HHHHHHHHHHHHHHHhccCCccc
Confidence 77777899999999999998877652 22222233322 38999999999999999999854
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.30 E-value=0.034 Score=55.71 Aligned_cols=66 Identities=8% Similarity=-0.056 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 001755 220 FNKVVKLYERCLIACANYPEYWIRYVLCMEASG----------SMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 286 (1017)
Q Consensus 220 ~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g----------~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~ 286 (1017)
++.+++.++.....+|.+.+.+++|+..|..+. -+++|..-|+.||.+. |+..+.+..|+..+..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHH
Confidence 456888888888999999999999988877642 2455666666777654 66666666666555443
No 342
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.24 E-value=0.12 Score=49.37 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHh---cCCCHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHhhcC-----CC---hHHHHHHHHHHHHc
Q 001755 222 KVVKLYERCLIA---CANYPEYWIRYVLCMEAS---G-SMDLAHNALARATHVFVK-----RL---PEIHLFAARFKEQN 286 (1017)
Q Consensus 222 ~a~~lyeraL~~---~p~~~~lW~~ya~~l~~~---g-~~e~A~~v~~rAl~~~~p-----~~---~~i~l~~a~~ee~~ 286 (1017)
..+..||+.|.. ..+-.+.|.+|+.|.+.+ | .-..-..+++||++.+.. ++ ..+|+.++.+ .
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~---~ 79 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN---C 79 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh---c
Confidence 345677877732 233358999999999972 3 455678889999987633 23 4567777664 3
Q ss_pred CCHHHHHHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 287 GDIDGARAAYQLVHT-ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 333 (1017)
Q Consensus 287 g~~~~Ar~iy~~~~~-~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~ 333 (1017)
+ .++++|.-+.. .+.-.....|..||.++...|++.+|.++|+.
T Consensus 80 ~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 D---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3 46777877543 23456788899999999999999999999975
No 343
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.21 E-value=0.0057 Score=42.69 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHH
Q 001755 34 LLICFRLFERGLAYVGTDYLSFPLWDKYIEYEY 66 (1017)
Q Consensus 34 ~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~ 66 (1017)
++++|.||||.|..++. ...|.+|.+||.
T Consensus 3 ~dRAR~IyeR~v~~hp~----~k~WikyAkFEe 31 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE----VKNWIKYAKFEE 31 (32)
T ss_pred HHHHHHHHHHHHHhCCC----chHHHHHHHhhc
Confidence 46799999999999877 899999999996
No 344
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.21 E-value=0.0093 Score=63.97 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=9.3
Q ss_pred cccchHHHHHHh
Q 001755 571 VGSYFVGQYYQV 582 (1017)
Q Consensus 571 vg~~Fv~~YY~~ 582 (1017)
+..+|-..||..
T Consensus 206 ~~~~~~~ey~~R 217 (465)
T KOG3973|consen 206 QCESFSREYYNR 217 (465)
T ss_pred HHHHHHHHHHHH
Confidence 466889999974
No 345
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.12 E-value=0.011 Score=63.02 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=59.6
Q ss_pred CccEEEEecCCCCCCHHHH------HHHHhcCCCeeEeeEEeecCCC---cccccEE--EEEECCHHHHHHHHHh-CCCc
Q 001755 880 EVKSVYVRNLPSTVTAFEI------EEEFQNFGRIKPDGVFVRNRKD---VVGVCYA--FVEFEDISGVQNAIQA-SPIQ 947 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L------~~~F~~~G~i~~v~i~~~~~~~---g~~kg~a--FVeF~~~~~a~~Al~~-~~~~ 947 (1017)
+..-+||-+||+.+..+++ .++|.+||+|+.+- .++++ +...+.+ ||+|.+.++|.++|.. .|..
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIv---vNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIV---VNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEE---ecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 3467899999988877762 58999999999853 34443 1122333 9999999999999998 8999
Q ss_pred ccCeEEEEEecc
Q 001755 948 LAGRQVYIEERR 959 (1017)
Q Consensus 948 i~g~~l~Ve~~r 959 (1017)
++||.|+..+..
T Consensus 190 ~DGr~lkatYGT 201 (480)
T COG5175 190 LDGRVLKATYGT 201 (480)
T ss_pred ccCceEeeecCc
Confidence 999999987654
No 346
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.09 E-value=0.84 Score=51.93 Aligned_cols=124 Identities=12% Similarity=0.111 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hhcCC-----
Q 001755 271 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTET---SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA-IEKGK----- 341 (1017)
Q Consensus 271 ~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l---~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~-~~~~~----- 341 (1017)
.....|+..+.+..+.|+++.|...+.++.... ....+.+.+.++.++...|+.++|...++..+. .....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 567889999999999999999999999975321 112467889999999999999999999999988 22211
Q ss_pred ----------------------CccCcHHHHHHHHHHHHHHhh------CCHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 001755 342 ----------------------EHSQTLPMLYAQYSRFLHLVS------RNAEKARQILVDSLDHVQLSKPLLEALIHFE 393 (1017)
Q Consensus 342 ----------------------~~~~~~~~l~~~~a~~l~~~~------g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E 393 (1017)
........++..+++|... . ++.+.+.+.|..+++.+|.....|..++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 0112345566778888766 5 8999999999999999999999999999876
Q ss_pred hh
Q 001755 394 SI 395 (1017)
Q Consensus 394 ~~ 395 (1017)
..
T Consensus 303 ~~ 304 (352)
T PF02259_consen 303 DK 304 (352)
T ss_pred HH
Confidence 43
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.97 E-value=0.025 Score=61.17 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=87.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHH
Q 001755 211 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 290 (1017)
Q Consensus 211 l~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~ 290 (1017)
+.-+.++|.+++|+.+|.+++...|.++-++.+.+..+.+.+++..|..-...|+.+. ...-..|...+..-+.+|++.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 3344678999999999999999999999999999999999999999988888888754 555666777777778899999
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 001755 291 GARAAYQLVHTETSPGLLEAIIKHANM 317 (1017)
Q Consensus 291 ~Ar~iy~~~~~~l~P~~~~~~~~~a~~ 317 (1017)
+|.+-+++++ +|.|+..++--.++.+
T Consensus 183 EAKkD~E~vL-~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 183 EAKKDCETVL-ALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhHHHHH-hhCcccHHHHHHHHHh
Confidence 9999999987 5899977766555543
No 348
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=95.96 E-value=0.0096 Score=41.56 Aligned_cols=31 Identities=16% Similarity=0.059 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHh
Q 001755 363 RNAEKARQILVDSLDHVQLSKPLLEALIHFES 394 (1017)
Q Consensus 363 g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~ 394 (1017)
+.+++||.||++.+..+|+ ...|+.|+.||.
T Consensus 1 kE~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred ChHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 3679999999999999876 899999999985
No 349
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.96 E-value=0.11 Score=56.75 Aligned_cols=77 Identities=21% Similarity=0.184 Sum_probs=58.2
Q ss_pred CccEEEEe--cCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCccc--CeEEE
Q 001755 880 EVKSVYVR--NLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA--GRQVY 954 (1017)
Q Consensus 880 ~~~~l~V~--nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~--g~~l~ 954 (1017)
++.-|.+. |--+.+|.+-|..+-...|+|.+|-|+- ++| --|.|||++.+.|++|-.+ ||.+|- =..|+
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk---kng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK---KNG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe---ccc---eeeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 34444444 4457899999999999999999864432 233 3699999999999999988 787763 35799
Q ss_pred EEeccCCC
Q 001755 955 IEERRPNT 962 (1017)
Q Consensus 955 Ve~~r~~~ 962 (1017)
||++++.+
T Consensus 193 IeyAkP~r 200 (494)
T KOG1456|consen 193 IEYAKPTR 200 (494)
T ss_pred EEecCcce
Confidence 99998754
No 350
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.019 Score=65.32 Aligned_cols=64 Identities=25% Similarity=0.250 Sum_probs=57.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHh-cCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhC
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS 944 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~ 944 (1017)
+.++||||+||.-++.++|..+|+ -||.|..+.|-+ |.+-+-+||-|-|+|.+..+..+||.+.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDt-D~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDT-DPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEecc-CcccCCCCCcceeeecccHHHHHHHhhh
Confidence 569999999999999999999998 799999988744 5555678999999999999999999884
No 351
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.81 E-value=0.085 Score=58.28 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=64.1
Q ss_pred ccEEEEecCC-CCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 881 VKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 881 ~~~l~V~nl~-~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
+..|.|.||. ..+|.+.|-.+|+-||.|.+|+|+ .+++ --|.|.+.|...|+-|++. +|+.|.|++|+|...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil-~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKIL-YNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEee-ecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 4788999996 578999999999999999998874 4443 3799999999999999998 799999999999887
Q ss_pred cC
Q 001755 959 RP 960 (1017)
Q Consensus 959 r~ 960 (1017)
+-
T Consensus 371 KH 372 (492)
T KOG1190|consen 371 KH 372 (492)
T ss_pred cC
Confidence 63
No 352
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.74 E-value=0.77 Score=52.15 Aligned_cols=172 Identities=15% Similarity=0.091 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hcCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHhhhcCCCcHH
Q 001755 236 NYPEYWIRYVLCMEASGSMDLAHNALARATHV---FVKRLPEIHLFAARFKEQ---NGDIDGARAAYQLVHTETSPGLLE 309 (1017)
Q Consensus 236 ~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~---~~p~~~~i~l~~a~~ee~---~g~~~~Ar~iy~~~~~~l~P~~~~ 309 (1017)
..+++-+.+..-+-...+++...++.+..-.+ ..++.+.+..+||..+.+ .|+.++|+.++..++....+...+
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 44567777777777778899888888755442 034578888899999998 899999999999966566777889
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHH----HHHHHH---H
Q 001755 310 AIIKHANMERRL---------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE----KARQIL---V 373 (1017)
Q Consensus 310 ~~~~~a~~e~r~---------g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e----~Ar~i~---~ 373 (1017)
++..++.++.+. ..+++|+..|.++.+..++. .--++++.++.. .|... +.+++- .
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-------Y~GIN~AtLL~~-~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-------YSGINAATLLML-AGHDFETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-------cchHHHHHHHHH-cCCcccchHHHHHHHHHHH
Confidence 888888876543 24789999999999988542 233677777665 55322 233333 1
Q ss_pred HHh-hh--cCCCHHHHHHHHHHH--hhCCChhHHHHHHHHHHHHhhcCCC
Q 001755 374 DSL-DH--VQLSKPLLEALIHFE--SIQSSPKQIDFLEQLVDKFLMSNSD 418 (1017)
Q Consensus 374 ~al-~~--~P~~~~lw~~~a~~E--~~~~~~~~~~~ar~l~e~al~~~~~ 418 (1017)
..+ +. .....++|.----+| ...++. +.+...+++++...|.
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~---~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGDY---EKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCCc
Confidence 111 11 112234775444444 455544 7788889998877554
No 353
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.72 E-value=0.12 Score=50.93 Aligned_cols=106 Identities=20% Similarity=0.136 Sum_probs=74.1
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcC
Q 001755 214 IERDGDFNKVVKLYERCLIACANYP------EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 287 (1017)
Q Consensus 214 e~~~g~~~~a~~lyeraL~~~p~~~------~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g 287 (1017)
....++.+.++..+++++....... .-|.. ..+..+++.. ..+...++..+...|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~------------~~r~~l~~~~-------~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVE------------PERERLRELY-------LDALERLAEALLEAG 76 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHH------------HHHHHHHHHH-------HHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHH------------HHHHHHHHHH-------HHHHHHHHHHHHhcc
Confidence 3566788899999999998763221 12322 2222333222 234556777788899
Q ss_pred CHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001755 288 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 339 (1017)
Q Consensus 288 ~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~ 339 (1017)
++++|..++++++ .++|.+-.+|..++.++.+.|+..+|+.+|+++.....
T Consensus 77 ~~~~a~~~~~~~l-~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 77 DYEEALRLLQRAL-ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp -HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9999999999987 46999999999999999999999999999999887654
No 354
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.72 E-value=0.36 Score=51.92 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=32.6
Q ss_pred HcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 285 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 285 ~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
+.|+.++|..+|+.++ .+.|.++++++.++.|.....++-+|-.+|-+|+.+.|.+
T Consensus 128 ~~Gk~ekA~~lfeHAl-alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHAL-ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred hccchHHHHHHHHHHH-hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 4455566666666654 3456666666666665555555555666666666655554
No 355
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.15 Score=55.37 Aligned_cols=135 Identities=16% Similarity=0.047 Sum_probs=102.7
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-c---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHH
Q 001755 201 VTELENWHNYLDFIERDGDFNKVVKLYERCLIA-C---ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 276 (1017)
Q Consensus 201 ~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~-~---p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~ 276 (1017)
|.++-.|..-=+.+.-.|+...-...++|.+-. + |-+..+--.|+-.+++.|-+++|.+.-+|||+++ +.+.+.+
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~ 212 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWAS 212 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHH
Confidence 455556666666666678887778888888755 3 5557888899999999999999999999999976 7788888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 277 LFAARFKEQNGDIDGARAAYQLVHTETSPGL----LEAIIKHANMERRLGNLEDAFSLYEQAIAI 337 (1017)
Q Consensus 277 l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~----~~~~~~~a~~e~r~g~~e~A~~iye~al~~ 337 (1017)
-..+.+++..+++.++.+...+-- ...... ...|-..+-++..-+.++.|.++|++-+-.
T Consensus 213 Ha~aHVlem~~r~Keg~eFM~~te-d~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k 276 (491)
T KOG2610|consen 213 HAKAHVLEMNGRHKEGKEFMYKTE-DDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWK 276 (491)
T ss_pred HHHHHHHHhcchhhhHHHHHHhcc-cchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHH
Confidence 889999999999999999888632 111111 123445666777779999999999876543
No 356
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.67 E-value=4.3 Score=48.56 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------HHHhhc---C-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALAR------ATHVFV---K-RLPEIHLFAARFKEQNGDIDGARAAYQLV 299 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~r------Al~~~~---p-~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~ 299 (1017)
+++-+-++++++..+++.|.++|++ |+++.. | ....+-..|+.-++..|.++.|...|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 3444555555555666666666553 222210 1 12233445666677777777776666543
No 357
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.63 E-value=0.069 Score=52.63 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 268 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~ 268 (1017)
..+..+++.+...|+++.++.++++++..+|.+..+|..++..+...|+...|..+|+++...+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4677778888889999999999999999999999999999999999999999999999887743
No 358
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.38 E-value=0.017 Score=41.53 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHH
Q 001755 261 LARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 293 (1017)
Q Consensus 261 ~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar 293 (1017)
|+||+++. |+++..|..+|.++...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555533 555555555555555555555543
No 359
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=1.8 Score=46.09 Aligned_cols=176 Identities=9% Similarity=0.044 Sum_probs=125.9
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHH-HHH
Q 001755 216 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID-GAR 293 (1017)
Q Consensus 216 ~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~-~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~-~Ar 293 (1017)
+...-.||..|-+.||..+|-+..+|.---.++.. ..++.+-.+.+.+.++-+ |++-.+|-.--.+.+.+|+.. .-.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchH
Confidence 33456799999999999999999999766555555 346777788898888744 889999999888889999877 566
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHH-HHHHHHhhCCHHHHHHHH
Q 001755 294 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY-SRFLHLVSRNAEKARQIL 372 (1017)
Q Consensus 294 ~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~-a~~l~~~~g~~e~Ar~i~ 372 (1017)
++...++. .+.++..+|..+--+.+..+.++.-...-.+.|+...-+..+.....+++.. -..+- .-..+.-....
T Consensus 134 ef~~~~l~-~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~--~~~le~El~yt 210 (318)
T KOG0530|consen 134 EFTKLMLD-DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVIS--KAELERELNYT 210 (318)
T ss_pred HHHHHHHh-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCcc--HHHHHHHHHHH
Confidence 67777664 5777889999888888888889888888888887765443210000000000 00000 01234456677
Q ss_pred HHHhhhcCCCHHHHHHHHHHHhh
Q 001755 373 VDSLDHVQLSKPLLEALIHFESI 395 (1017)
Q Consensus 373 ~~al~~~P~~~~lw~~~a~~E~~ 395 (1017)
.+.+...|.+...|.-+.-+...
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHh
Confidence 88889999999999988888765
No 360
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.33 E-value=0.19 Score=49.75 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=49.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 943 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~ 943 (1017)
...+|.|.+||...++.+|++++.+-|.|....|. + -|++.|+|-..++++-||..
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~-r-------Dg~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ-R-------DGVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee-c-------ccceeeeeeehhhHHHHHHh
Confidence 45899999999999999999999999999876542 2 25899999999999999987
No 361
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.32 E-value=0.038 Score=44.24 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=40.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHH
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 941 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al 941 (1017)
+.|-|.|.+.+..+ .+..+|..||+|.++.+ . ....+.+|.|.+..++++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~--~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYV--P-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEc--C-----CCCcEEEEEECCHHHHHhhC
Confidence 57888888877654 45679999999998543 2 12459999999999999985
No 362
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.20 E-value=0.06 Score=49.10 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=50.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecC------CCcccccEEEEEECCHHHHHHHHHhCCCcccCeE-E
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR------KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQ-V 953 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~------~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~-l 953 (1017)
.+.|.|=+.|.. ....+.+.|++||.|.+..-..++. .......+--|.|+++.+|.+||..||..|+|.. +
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 467888899877 5566779999999997642011110 0112456899999999999999999999999865 4
Q ss_pred EEEec
Q 001755 954 YIEER 958 (1017)
Q Consensus 954 ~Ve~~ 958 (1017)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 45543
No 363
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.15 E-value=2.6 Score=57.06 Aligned_cols=211 Identities=21% Similarity=0.240 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHH
Q 001755 204 LENWHNYLDFIERDGDFNKVVKLYERCLIAC-------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 276 (1017)
Q Consensus 204 l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~-------p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~ 276 (1017)
-++|.+.+..-....+..+-+-.+.|++-.. ..-.+.|+.+|++.-..|.++.|.+.+-.|.+. .-+.++
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---r~~~i~ 1705 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---RLPEIV 1705 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---ccchHH
Confidence 3799999988777676666666777766433 234689999999999999999999999888873 478999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCC----------c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhh
Q 001755 277 LFAARFKEQNGDIDGARAAYQLVHTETSPG----------L------LEAIIKHANMERRLGNL--EDAFSLYEQAIAIE 338 (1017)
Q Consensus 277 l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~----------~------~~~~~~~a~~e~r~g~~--e~A~~iye~al~~~ 338 (1017)
+..|+++...|+...|..+++..+...-|+ . ..+.+.++.+....+++ +...+.|..+.+..
T Consensus 1706 ~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1706 LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 999999999999999999999876433333 1 11344455555566664 56788899999998
Q ss_pred cCCCccCcHHHHHHHHHHHHHHh-------hCCHHH---HHHHHHHHhhhcCCC--------HHHHHHHHHHH---hhCC
Q 001755 339 KGKEHSQTLPMLYAQYSRFLHLV-------SRNAEK---ARQILVDSLDHVQLS--------KPLLEALIHFE---SIQS 397 (1017)
Q Consensus 339 ~~~~~~~~~~~l~~~~a~~l~~~-------~g~~e~---Ar~i~~~al~~~P~~--------~~lw~~~a~~E---~~~~ 397 (1017)
+.-+... ..+...|.+++... .|++.. +...|.+++...-.. ..+|+.+..-- ...+
T Consensus 1786 ~ewe~~h--y~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~ 1863 (2382)
T KOG0890|consen 1786 PEWEDKH--YHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAP 1863 (2382)
T ss_pred ccccCce--eeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCC
Confidence 8443321 11223344454332 344444 444445665433222 22555432111 1122
Q ss_pred Chh----HHHHHHHHHHHHhhcCCCC
Q 001755 398 SPK----QIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 398 ~~~----~~~~ar~l~e~al~~~~~~ 419 (1017)
+.+ +++.+.++++.+++..|..
T Consensus 1864 r~ei~s~~~~~in~~i~~~~~~lp~Y 1889 (2382)
T KOG0890|consen 1864 RGEIVSKNLKLINSLIEEALEHLPTY 1889 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcch
Confidence 221 2456677788888877664
No 364
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.17 Score=52.72 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 219 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 298 (1017)
Q Consensus 219 ~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~ 298 (1017)
.+..|+..|-|||..+|+.+..|.+-+.++++.++++.+..--.||+++ .|+....|++++........+++|+.++.+
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-DPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-ChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4667888999999999999999999999999999999998888999984 489999999999999889999999999998
Q ss_pred Hh
Q 001755 299 VH 300 (1017)
Q Consensus 299 ~~ 300 (1017)
++
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 84
No 365
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=95.12 E-value=0.073 Score=56.81 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=83.0
Q ss_pred ccccccchHHHHHHhcccChhhh-hccccCCceEEE-E-cCCcc-ccc-cchHHHHHHhhcCCCcce-----eEEe--ee
Q 001755 568 PAQVGSYFVGQYYQVLQQQPDLV-HQFYSDASSMIR-V-DGDST-ESA-SSMLDIHSLVISLNFTAI-----EIKT--IN 635 (1017)
Q Consensus 568 ~~~vg~~Fv~~YY~~l~~~p~~l-~~fY~~~ss~~~-~-~g~~~-~~~-~~~~~I~~~i~~l~~~~~-----~i~~--~d 635 (1017)
....|..|.++||.+|+..++.+ +.-+.+++++-. + .++.. .-. .|.+.+..+|.+|..+.. .+++ +.
T Consensus 127 ~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~G~k 206 (262)
T PF15008_consen 127 IHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSDGVK 206 (262)
T ss_pred HHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCCCcc
Confidence 34579999999999999955554 333446666532 2 22222 112 466677789999887653 3444 66
Q ss_pred ccccCCCceEEEEEEEEEecCCccccceeEEEEEEEeC---CeEEEEcceEEeec
Q 001755 636 SLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFLD 687 (1017)
Q Consensus 636 ~q~s~~~~ilv~V~G~~~~~~~~~~~~F~q~F~L~~~~---~~y~V~nDifr~~~ 687 (1017)
|--++.|-|+|.|.|+|-.++.+ -=-|=|.|=|...+ |.|.|.+==+|...
T Consensus 207 ~~~~phGlV~V~v~GTvH~~~~C-lGiFEq~FGLiRdP~~~N~WKiK~~~l~i~~ 260 (262)
T PF15008_consen 207 GRISPHGLVLVAVCGTVHRDNTC-LGIFEQIFGLIRDPFAENNWKIKFVNLRIRG 260 (262)
T ss_pred eEEcCCCcEEEEEeeeEecCCce-EeehhhhhhcccCccccCceeEEEEEEEEEe
Confidence 66677788999999999887765 34699999999876 89998876666543
No 366
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.01 E-value=0.14 Score=58.15 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--------cHHH
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--------LLEA 310 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~--------~~~~ 310 (1017)
++-.--+.++....++..+..-.+-+..+. .+.+...+.-+.+|..+|++.+|.+.+.+.-.+..|. ....
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif 285 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIF 285 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhee
Confidence 344444555555444444443333344332 4567777888999999999999999999864444444 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hhc----CCCc------c-CcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhh
Q 001755 311 IIKHANMERRLGNLEDAFSLYEQAIA-IEK----GKEH------S-QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 378 (1017)
Q Consensus 311 ~~~~a~~e~r~g~~e~A~~iye~al~-~~~----~~~~------~-~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~ 378 (1017)
|.+++.+..+.|.+..+..+|.+|+. .+. +-.. + .....+..+.+-. +.+.|+.-.|.++|.+++..
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~-~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLL-YLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHH-HHhcCCcHHHHHHHHHHHHH
Confidence 88899999999999999999999996 221 1000 0 0112344444444 44599999999999999999
Q ss_pred cCCCHHHHHHHHHH
Q 001755 379 VQLSKPLLEALIHF 392 (1017)
Q Consensus 379 ~P~~~~lw~~~a~~ 392 (1017)
+..++.+|+++++-
T Consensus 365 fh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 365 FHRNPRLWLRLAEC 378 (696)
T ss_pred HhcCcHHHHHHHHH
Confidence 99999999999974
No 367
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.062 Score=61.41 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=48.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCc--cccc---EEEEEECCHHHHHHHHHh
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVC---YAFVEFEDISGVQNAIQA 943 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g--~~kg---~aFVeF~~~~~a~~Al~~ 943 (1017)
-+++||||+||++++|+.|...|..||.++- +-..+....+ -++| |+|+.|+++.++..-|.+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 4689999999999999999999999999862 1111111111 1467 999999999998887766
No 368
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=94.80 E-value=0.089 Score=54.15 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=58.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCccc-CeEEEEEe
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIEE 957 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~-g~~l~Ve~ 957 (1017)
++..+|+.|||..++.+.|..+|.+|.-.+.++. +... ++.|||+|.+...+..|... .+..|. ...++|.+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~-i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRL-IPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEe-ccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 4589999999999999999999999998888653 3322 47999999998887877776 466665 66677765
Q ss_pred cc
Q 001755 958 RR 959 (1017)
Q Consensus 958 ~r 959 (1017)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 43
No 369
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.71 E-value=0.018 Score=59.82 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=54.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCC--------ccccc----EEEEEECCHHHHHHHHHh-CCCcc
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD--------VVGVC----YAFVEFEDISGVQNAIQA-SPIQL 948 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~--------g~~kg----~aFVeF~~~~~a~~Al~~-~~~~i 948 (1017)
--||++|||+.++...|+++|+.||.|-.|-+. ....+ |.+++ =|.|+|.+...|+.+... |+..|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylq-pE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQ-PEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEec-chhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 479999999999999999999999999886432 22222 22222 277999999999988777 89999
Q ss_pred cCeE
Q 001755 949 AGRQ 952 (1017)
Q Consensus 949 ~g~~ 952 (1017)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 370
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.54 E-value=0.11 Score=60.78 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=65.3
Q ss_pred CCcc-EEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 879 GEVK-SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 879 ~~~~-~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
.+++ -|-+.|+|++++-+||.++|..|-.+-.- |.++....|+..|-|.|-|++.++|.+|... ++..|..|.|++.
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~s-I~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNS-IRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCc-eeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3455 66799999999999999999999766542 5566666789999999999999999999877 7999999988875
Q ss_pred e
Q 001755 957 E 957 (1017)
Q Consensus 957 ~ 957 (1017)
.
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 3
No 371
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=16 Score=44.68 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=49.7
Q ss_pred CCCcchhhHHHHHHHHHHHHHcCCCCC------ChhHHHHHHHHHHHcccHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 001755 27 CPNNFFFLLICFRLFERGLAYVGTDYL------SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE 98 (1017)
Q Consensus 27 ~~~~~~~~~~iR~~fEral~~~G~d~~------s~~lW~~Yi~fE~~~~~~~~~~~iy~R~l~~P~~~~~~~~~~f~~ 98 (1017)
|+++-+--..=++.||+|+.++-..-. =.++|..||+++...+.+..+..+.-+++..-+..++.+-..|.+
T Consensus 358 ~~~Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 358 DQEDHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE 435 (846)
T ss_pred CcchhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc
Confidence 344422233346789999986533221 257999999999999999999999999998866544444444544
No 372
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.87 Score=49.72 Aligned_cols=159 Identities=13% Similarity=-0.077 Sum_probs=117.9
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHH
Q 001755 215 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDG 291 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~l~~a~~ee~~g~~~~ 291 (1017)
.-.|.+.+|....++.|...|.+.-.|..--+.+.-.|+.+.-++.++|.+-.-.+. ...++=+|+.-++..|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 346788888899999999999998888887777777899999999999876532233 34566778999999999999
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001755 292 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 371 (1017)
Q Consensus 292 Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i 371 (1017)
|.+.-++++ ++++.+.-+....+-++.-.|++.++.+...+--+.-... ......-|-..|-|... .+.+++|.+|
T Consensus 194 AEk~A~ral-qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--~mlasHNyWH~Al~~iE-~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL-QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--WMLASHNYWHTALFHIE-GAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc-cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--hHHHhhhhHHHHHhhhc-ccchhHHHHH
Confidence 999999987 5799877777777778888899999988876654433311 00001112234555444 6899999999
Q ss_pred HHHHhh
Q 001755 372 LVDSLD 377 (1017)
Q Consensus 372 ~~~al~ 377 (1017)
|.+-+-
T Consensus 270 yD~ei~ 275 (491)
T KOG2610|consen 270 YDREIW 275 (491)
T ss_pred HHHHHH
Confidence 987653
No 373
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.37 E-value=1.7 Score=51.64 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=101.8
Q ss_pred cCChHHHHHHHHHHHHhcCCCHH------HHHHHHH-HHH----HcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 001755 217 DGDFNKVVKLYERCLIACANYPE------YWIRYVL-CME----ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 285 (1017)
Q Consensus 217 ~g~~~~a~~lyeraL~~~p~~~~------lW~~ya~-~l~----~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~ 285 (1017)
.||.+..+.++.+|.....-... +|+..+. ... .....+.|..++++....+ |+..-..++.|+++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 47888899999998764322221 2222111 111 1346788999999999977 8888888888999999
Q ss_pred cCCHHHHHHHHHHHhhh--cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHH-HHHHHHHHHh
Q 001755 286 NGDIDGARAAYQLVHTE--TSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY-AQYSRFLHLV 361 (1017)
Q Consensus 286 ~g~~~~Ar~iy~~~~~~--l~P~-~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~-~~~a~~l~~~ 361 (1017)
.|++++|.+.|++++.. -.+. ..-.+..++..+..++++++|...|.+.++...-. ..+| ...|-.+..
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS------ka~Y~Y~~a~c~~~- 352 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS------KAFYAYLAAACLLM- 352 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHh-
Confidence 99999999999987531 0111 12245666777778899999999999998864431 2233 333444444
Q ss_pred hCCH-------HHHHHHHHHHhh
Q 001755 362 SRNA-------EKARQILVDSLD 377 (1017)
Q Consensus 362 ~g~~-------e~Ar~i~~~al~ 377 (1017)
.++. ++|.++|.++-.
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHH
Confidence 7877 666666665543
No 374
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.14 E-value=0.12 Score=36.69 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001755 309 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 309 ~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~ 340 (1017)
++|+.++.++...|++++|+..|++++.+.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666553
No 375
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.09 E-value=0.12 Score=36.55 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALARATHV 267 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~rAl~~ 267 (1017)
++|+.++.++...|++++|+..|++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34555555555555555555555555543
No 376
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.94 Score=47.51 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 284 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee 284 (1017)
.+.+.-+.-+...|++++|...|..|+...-+ ..+-++-|+.+= .+ +. ...-.++++|+.++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~--------L~lkEkP~e~eW-~e-Ld-------k~~tpLllNy~QC~L 241 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRN--------LQLKEKPGEPEW-LE-LD-------KMITPLLLNYCQCLL 241 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH--------HHhccCCCChHH-HH-HH-------HhhhHHHHhHHHHHh
Confidence 35566666666778888888888887765321 111111111110 00 11 112345778888888
Q ss_pred HcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 285 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 285 ~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
..|++-++.+....++. .+|++..++++++......=|.++|++-|.+++++.|.-
T Consensus 242 ~~~e~yevleh~seiL~-~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILR-HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 88899888888888775 599999999999999988889999999999999998763
No 377
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.94 E-value=0.039 Score=60.16 Aligned_cols=74 Identities=26% Similarity=0.271 Sum_probs=56.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCee--EeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEE
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 955 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~--~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~V 955 (1017)
-.|-.++||+++++.++.++|..--.|. ..+|....+..|+..|-|||.|..+++++.||..+.-.|+-|-|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4567789999999999999996322222 1124444555688899999999999999999998877777665555
No 378
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.78 E-value=16 Score=50.18 Aligned_cols=204 Identities=16% Similarity=0.166 Sum_probs=121.0
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC----------
Q 001755 202 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---------- 271 (1017)
Q Consensus 202 ~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~---------- 271 (1017)
.-.+.|..++++....|.+++|....-.|.+.. -+++.+..|.|+...|+...|..+++..++.+.|+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 345789999999999999999877777776665 47888899999999899899999988888755444
Q ss_pred ------ChHHHHHHHHHHHHcCCHH--HHHHHHHHHhhhcCC--------------------------------------
Q 001755 272 ------LPEIHLFAARFKEQNGDID--GARAAYQLVHTETSP-------------------------------------- 305 (1017)
Q Consensus 272 ------~~~i~l~~a~~ee~~g~~~--~Ar~iy~~~~~~l~P-------------------------------------- 305 (1017)
...+.+..+.+.+..++.+ ...+.|..+. ++.|
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~-ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~ 1824 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAK-AILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAI 1824 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHH
Confidence 1223444556666665532 2333333321 1222
Q ss_pred -------------------CcHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHH
Q 001755 306 -------------------GLLEAIIKHANM----------ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 356 (1017)
Q Consensus 306 -------------------~~~~~~~~~a~~----------e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~ 356 (1017)
....+|+.++.. +...++.+....+.++++...|. ..++..|..
T Consensus 1825 ~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~-------Y~f~ta~sQ 1897 (2382)
T KOG0890|consen 1825 YFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPT-------YQFYTAYSQ 1897 (2382)
T ss_pred HHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcc-------hHHHHHHHH
Confidence 222222221110 00111222233333334444433 345556666
Q ss_pred HHHHhhCCHHHHHHHHHHHhh----hcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001755 357 FLHLVSRNAEKARQILVDSLD----HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 418 (1017)
Q Consensus 357 ~l~~~~g~~e~Ar~i~~~al~----~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~ 418 (1017)
++-+.+...++...++...+. ..|. ..+|...+.+-... +.+.+++..++.++....++
T Consensus 1898 LlSRicH~~~dV~~vl~~II~~l~~~YPq-q~lW~~~a~~kS~~--p~R~~R~keIL~k~~~~~~~ 1960 (2382)
T KOG0890|consen 1898 LLSRICHPNQDVARVLKHIIAKLVLAYPQ-QTLWQSAALSKSNV--PSRVERCKEILTKSRRQKPD 1960 (2382)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHhCch-HHHHHHHHHHhccc--HHHHHHHHHHHHHHHhcCcc
Confidence 666666666666555555443 4554 56888888776654 55678888888877665444
No 379
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.78 E-value=13 Score=41.01 Aligned_cols=232 Identities=14% Similarity=0.000 Sum_probs=136.2
Q ss_pred HHcCChHHHHHHHHHHHHhc-CCCHH-------HHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcC------C-------C
Q 001755 215 ERDGDFNKVVKLYERCLIAC-ANYPE-------YWIRYVLCMEASG-SMDLAHNALARATHVFVK------R-------L 272 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~-p~~~~-------lW~~ya~~l~~~g-~~e~A~~v~~rAl~~~~p------~-------~ 272 (1017)
.++|+++.|..+|.||-... ...++ +.+..+.-+...+ +++.|...++||.+++.. . .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45799999999999987665 44443 5566666666778 999999999999997411 1 2
Q ss_pred hHHHHHHHHHHHHcCCH---HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHH
Q 001755 273 PEIHLFAARFKEQNGDI---DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 349 (1017)
Q Consensus 273 ~~i~l~~a~~ee~~g~~---~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~ 349 (1017)
..+...++..+...+.. ++|..+.+.+-. -.|+.+.+++-...++.+.++.+++.+++.+++....-.+.. ..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~---~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESN---FD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccch---HH
Confidence 33455567777666654 446666666543 378888888888888888999999999999999987622111 33
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHhh-hcCCCHHHHHHHHHHH-----hhC---CChhHHHHHHHHHHHHhhcCCCCC
Q 001755 350 LYAQYSRFLHLVSRNAEKARQILVDSLD-HVQLSKPLLEALIHFE-----SIQ---SSPKQIDFLEQLVDKFLMSNSDSP 420 (1017)
Q Consensus 350 l~~~~a~~l~~~~g~~e~Ar~i~~~al~-~~P~~~~lw~~~a~~E-----~~~---~~~~~~~~ar~l~e~al~~~~~~~ 420 (1017)
+.+...+.+.. .....|..++..+|. +.-.+.+-|..-+-+. ... ....+++.+..+++........
T Consensus 160 ~~l~~i~~l~~--~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~-- 235 (278)
T PF08631_consen 160 SILHHIKQLAE--KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGK-- 235 (278)
T ss_pred HHHHHHHHHHh--hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcC--
Confidence 33443433333 334556666666554 3222222143222221 111 1222356666666644333222
Q ss_pred CCCCHHHHHH----HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001755 421 STANAAEREE----LSCVFLEFLGLFGDAQLIKKAEDRHA 456 (1017)
Q Consensus 421 ~~l~~~~~~~----l~~~~l~fe~~~Gd~~~~~~~~~r~~ 456 (1017)
.++.+++.. ||.. ..-.-..++.+.+...++-.+
T Consensus 236 -~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 236 -QLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred -CCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 245554433 3332 222233456677766666544
No 380
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.24 Score=51.62 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001755 252 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLY 331 (1017)
Q Consensus 252 g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iy 331 (1017)
.+++.|...|-||+.+. |..+.+|.+-|..+.+..+++.+..-..+++ ++.|+.+...+.++.......++++|+.++
T Consensus 24 k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrral-ql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRAL-QLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHH-hcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 46889999999999865 9999999999999999999999999999986 689999999999999999999999999999
Q ss_pred HHHHHhhcC
Q 001755 332 EQAIAIEKG 340 (1017)
Q Consensus 332 e~al~~~~~ 340 (1017)
.+|..+...
T Consensus 102 qra~sl~r~ 110 (284)
T KOG4642|consen 102 QRAYSLLRE 110 (284)
T ss_pred HHHHHHHhc
Confidence 999776653
No 381
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.17 Score=58.11 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=54.9
Q ss_pred CccEEEEecCCCCCCH--H----HHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccC-e
Q 001755 880 EVKSVYVRNLPSTVTA--F----EIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-R 951 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~--~----~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g-~ 951 (1017)
-...|+|-|+|---.. + -|..+|+++|+|..+-+.+ +.. |.++||.|++|.+..+|+.|++. +|..|+- +
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~-~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPI-DEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeecc-Ccc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3468899999853222 2 3568899999998865433 444 44999999999999999999998 7888764 4
Q ss_pred EEEE
Q 001755 952 QVYI 955 (1017)
Q Consensus 952 ~l~V 955 (1017)
...|
T Consensus 135 tf~v 138 (698)
T KOG2314|consen 135 TFFV 138 (698)
T ss_pred eEEe
Confidence 4555
No 382
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.41 E-value=0.22 Score=48.21 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEeccCCC
Q 001755 897 EIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNT 962 (1017)
Q Consensus 897 ~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~r~~~ 962 (1017)
+|-+.|..||++.-+++ + .+.-+|+|.+..+|.+|+..+|..++|+.|+|..+.+..
T Consensus 52 ~ll~~~~~~GevvLvRf-v--------~~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRF-V--------GDTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEE-E--------TTCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEE-e--------CCeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 67788999999865432 2 135699999999999999999999999999999887654
No 383
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.40 E-value=1.8 Score=44.20 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIACAN---YPEYWIRYVLCMEASGSMDLAHNALARATHVF 268 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~---~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~ 268 (1017)
..|..+++++.+.|+++.|++.|.|+...|-. -.++|+..+......+++..+...+.+|-.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998854 34688888888888899999999999988754
No 384
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=29 Score=43.78 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-cCC-ChHHHHHHHH
Q 001755 204 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF-VKR-LPEIHLFAAR 281 (1017)
Q Consensus 204 l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~-~p~-~~~i~l~~a~ 281 (1017)
-..|..++..-.+.|....|+.-|=|| .++.-+...+....+.|.+++...++.-|-+.. .|. +.++.+.||+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 467888888777777777777777665 566677777777777777777777666555422 111 2333333332
Q ss_pred HHH------------------------HcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 282 FKE------------------------QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 337 (1017)
Q Consensus 282 ~ee------------------------~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~ 337 (1017)
... ..+.++.|+-+|. +...|-+++..+..+|++..|...-++|-..
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 211 1112222222222 2345777777777777776665554444221
Q ss_pred ---------hcCCCccC----------cHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhC
Q 001755 338 ---------EKGKEHSQ----------TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 396 (1017)
Q Consensus 338 ---------~~~~~~~~----------~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~ 396 (1017)
+-+..... ....-+-.+.++ |+..|-+++-..+++.+|-...-+-.++..++-+....
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~-Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEY-YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHH-HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 11110000 000111122233 34467777777888777766554444555555554443
No 385
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.38 E-value=1.2 Score=49.92 Aligned_cols=161 Identities=17% Similarity=0.066 Sum_probs=90.2
Q ss_pred cCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhhcCCChHH--
Q 001755 217 DGDFNKVVKLYERCLIACA------NYPEYWIRYVLCMEASGS-------------MDLAHNALARATHVFVKRLPEI-- 275 (1017)
Q Consensus 217 ~g~~~~a~~lyeraL~~~p------~~~~lW~~ya~~l~~~g~-------------~e~A~~v~~rAl~~~~p~~~~i-- 275 (1017)
.|.+++|+.+.+|-|.... .....+++++..+...|+ -++++..|++|++.+. .+.++
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~-eNL~l~~ 186 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM-ENLELSE 186 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3455555555555443321 123466777777765443 4567777777776431 11111
Q ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHHhh---hcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001755 276 -----------HLFAARFKEQNGDIDGARAAYQLVHT---ETS--PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 339 (1017)
Q Consensus 276 -----------~l~~a~~ee~~g~~~~Ar~iy~~~~~---~l~--P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~ 339 (1017)
+=.++..+.-+|+++.|+..-+.-+. ++. -....++.++++.+.-+|+++.|.+.|++.+.+..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 11223344445788887765553221 100 00134567788888889999999999999887654
Q ss_pred CCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc
Q 001755 340 GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 340 ~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~ 379 (1017)
.-.....-......++.-+.. ..++++|..++.+-|.+.
T Consensus 267 elg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 211111113344455555454 778888888887776543
No 386
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.37 E-value=0.38 Score=52.37 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=58.0
Q ss_pred CccEEEEecCC----CCCCH-------HHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCc
Q 001755 880 EVKSVYVRNLP----STVTA-------FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 947 (1017)
Q Consensus 880 ~~~~l~V~nl~----~~~t~-------~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~ 947 (1017)
..++|.++|+= ...+. ++|++--++||.|.+|- |.++ .+.|.+-|.|.+.+.|..||+. +|..
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vv--v~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVV--VYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEE--Eecc---CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 34899999983 23332 44556678999999964 4444 3679999999999999999998 6999
Q ss_pred ccCeEEEEEecc
Q 001755 948 LAGRQVYIEERR 959 (1017)
Q Consensus 948 i~g~~l~Ve~~r 959 (1017)
|+||+|..+.-.
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999887543
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.23 E-value=9.5 Score=47.22 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=110.1
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcC-CCh
Q 001755 200 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP----EYWIRYVLCMEA-SGSMDLAHNALARATHVFVK-RLP 273 (1017)
Q Consensus 200 ~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~----~lW~~ya~~l~~-~g~~e~A~~v~~rAl~~~~p-~~~ 273 (1017)
++.++..+++++.. +++.++-++...+-.+ .+.++|+.++.. ..+++.|+.+++|++.+... +..
T Consensus 26 ~~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 26 SEEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred ChhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44555566666543 5566777775443333 478899998885 78999999999999876522 222
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhhcCCCcc
Q 001755 274 ----EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME-----RRLGNLEDAFSLYEQAIAIEKGKEHS 344 (1017)
Q Consensus 274 ----~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e-----~r~g~~e~A~~iye~al~~~~~~~~~ 344 (1017)
.....+++++++.+... |...+++.+..........|.-..++. ...++...|...++.+........+.
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 22344588888877766 999999876543332223343333332 23379999999999999887522221
Q ss_pred CcHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHhhhcC----------CCHHHHHHHHHHHh
Q 001755 345 QTLPMLYAQYSRF-LHLVSRNAEKARQILVDSLDHVQ----------LSKPLLEALIHFES 394 (1017)
Q Consensus 345 ~~~~~l~~~~a~~-l~~~~g~~e~Ar~i~~~al~~~P----------~~~~lw~~~a~~E~ 394 (1017)
. ..++..+... +....+..+.+.+..++++...- ....+|..++++-.
T Consensus 176 ~--~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~ 234 (608)
T PF10345_consen 176 A--VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCC 234 (608)
T ss_pred H--HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH
Confidence 1 1222222221 12226767778777777744222 22347766666653
No 388
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.19 E-value=0.39 Score=56.02 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=79.0
Q ss_pred cccchHHHHHHhcccChhhh-hccccCCceEEE-EcCCcc------------------------------ccccchHHHH
Q 001755 571 VGSYFVGQYYQVLQQQPDLV-HQFYSDASSMIR-VDGDST------------------------------ESASSMLDIH 618 (1017)
Q Consensus 571 vg~~Fv~~YY~~l~~~p~~l-~~fY~~~ss~~~-~~g~~~------------------------------~~~~~~~~I~ 618 (1017)
+=..|+++||...+.+...+ ...|+++|+|.+ .+.... ....+..+|.
T Consensus 340 LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g~~~Iv 419 (585)
T KOG3763|consen 340 LVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHGACDIV 419 (585)
T ss_pred HHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhccchHHH
Confidence 34599999999998776665 455556888863 221110 1234556899
Q ss_pred HHhhcCCCccee----EEeeeccccCCCceEEEEEEEEEecCC---ccccc---eeEEEEEEEeC-CeEEEEcceEEeec
Q 001755 619 SLVISLNFTAIE----IKTINSLGSWNGGVLVMVSGSVKTKEF---CRRRK---FVQTFFLAPQE-KGYFVLNDIFHFLD 687 (1017)
Q Consensus 619 ~~i~~l~~~~~~----i~~~d~q~s~~~~ilv~V~G~~~~~~~---~~~~~---F~q~F~L~~~~-~~y~V~nDifr~~~ 687 (1017)
..|..||-+.|. |..+-.|.. .++.+.|.|.+.-.+. ..-+. |+-||+..|-+ .+--|.||.+-.-.
T Consensus 420 ~aLs~LPkT~Hdl~s~vvDv~~~~~--~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d~Lfi~~ 497 (585)
T KOG3763|consen 420 VALSALPKTQHDLDSFVVDVWYQTG--NLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVNDQLFIAS 497 (585)
T ss_pred HHHHhCccchhhhhhhheeeeeccc--ceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEeceeEEee
Confidence 999999988774 444555553 5799999999853221 11234 99999999998 58999999765544
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.17 E-value=15 Score=42.68 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC--ChHHHHHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAARFK 283 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~--~~~i~l~~a~~e 283 (1017)
.+...+..+.++ ..+....+.||.+++|-++..+=-.++.++++ .+.+.+...|.+|+..+.|+ +..+.-.|+.+-
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~ 178 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP 178 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 556667777766 45677889999999999999999999999998 78889999999999988774 445555566655
Q ss_pred HHc-CCHHHHHHHHHHHhhhcCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 284 EQN-GDIDGARAAYQLVHTETSPGLLEAIIKHA-NMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 284 e~~-g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a-~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
+-. .+.|.-..+..++-+.+.-+...+.+... .-+....|+++|+.++...++....+
T Consensus 179 ~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 179 ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchh
Confidence 433 35666666666655555555566666666 34555689999999999988876543
No 390
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.02 E-value=4.2 Score=41.63 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCc--H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHH
Q 001755 276 HLFAARFKEQNGDIDGARAAYQLVHTETSPGL--L--EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 351 (1017)
Q Consensus 276 ~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~--~--~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~ 351 (1017)
-+.+|..+...|++++|...++.++. .|.+ + -+-++++.+...+|.+|+|..+++..-.. + ....+.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~--~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~------~-w~~~~~ 162 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALA--QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE------S-WAAIVA 162 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHc--cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc------c-HHHHHH
Confidence 34567777788999999999998763 3332 1 23567888888899999998887643221 1 012223
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhhcCCC
Q 001755 352 AQYSRFLHLVSRNAEKARQILVDSLDHVQLS 382 (1017)
Q Consensus 352 ~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~ 382 (1017)
.--++++.. .|+-++||+.|+++++..+..
T Consensus 163 elrGDill~-kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 163 ELRGDILLA-KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHhhhHHHH-cCchHHHHHHHHHHHHccCCh
Confidence 344666666 999999999999999987543
No 391
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.90 E-value=0.029 Score=66.33 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKL-YERCLIACANYPEYWIRYVLCMEASGSMDL 256 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~l-yeraL~~~p~~~~lW~~ya~~l~~~g~~e~ 256 (1017)
++...++|+++... . .++.. +.-.-..|..++++--+.++.|.+.-..|+
T Consensus 59 ~Ai~a~~DLcEDed-~-~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 59 EAINAQLDLCEDED-V-QIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp HHHHHHHHHHT-SS-H-HHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhccc-H-HHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhccc
Confidence 57788888887433 2 23333 333335566677788888888777443443
No 392
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.85 E-value=0.23 Score=53.29 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=55.7
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 001755 215 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 281 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~ 281 (1017)
...|+.++|..+|+.||...|.++++.+.++.|.+..+++-+|-.+|-||+.+ .|.+.+...+.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti-sP~nseALvnR~R 192 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI-SPGNSEALVNRAR 192 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee-CCCchHHHhhhhc
Confidence 45788899999999999999999999999999999888888999999999975 4777776666544
No 393
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.84 E-value=0.21 Score=35.49 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001755 309 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 309 ~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~ 340 (1017)
.+|+.++.++..+|++++|...|++++++.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666667777777777777666553
No 394
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.46 E-value=12 Score=41.81 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcH
Q 001755 274 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 347 (1017)
Q Consensus 274 ~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~------~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~ 347 (1017)
+.++++++-.++..++.+++.+-...+ . .|.- -.+...+++.+.-++.++++.+.|+.|+....+..+...-
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l-~-lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCL-G-LPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh-c-CCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 456667777777777777776655433 2 2221 1245557777888899999999999999988766554333
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc
Q 001755 348 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 348 ~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~ 379 (1017)
-.+++.++.+..+ .+|+++|.-...+|+++.
T Consensus 162 lqvcv~Lgslf~~-l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQ-LKDYEKALFFPCKAAELV 192 (518)
T ss_pred eehhhhHHHHHHH-HHhhhHHhhhhHhHHHHH
Confidence 4566778888666 999999999988888754
No 395
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.44 E-value=0.037 Score=65.52 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=5.7
Q ss_pred chHHHHHHhc
Q 001755 574 YFVGQYYQVL 583 (1017)
Q Consensus 574 ~Fv~~YY~~l 583 (1017)
..++..|++|
T Consensus 306 ~~L~~i~~~L 315 (556)
T PF05918_consen 306 QLLPSIFQLL 315 (556)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4556666655
No 396
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.34 E-value=0.61 Score=55.82 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=6.3
Q ss_pred chHHHHHHhccc
Q 001755 574 YFVGQYYQVLQQ 585 (1017)
Q Consensus 574 ~Fv~~YY~~l~~ 585 (1017)
+|-.|||.+...
T Consensus 419 ~~rpqYykLIEe 430 (1102)
T KOG1924|consen 419 YIRPQYYKLIEE 430 (1102)
T ss_pred hhhHHHHHHHHH
Confidence 344566665543
No 397
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.32 E-value=0.51 Score=56.42 Aligned_cols=9 Identities=11% Similarity=-0.201 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 001755 206 NWHNYLDFI 214 (1017)
Q Consensus 206 ~W~~yl~~e 214 (1017)
.|..++.-.
T Consensus 144 eyV~~l~~g 152 (1102)
T KOG1924|consen 144 EYVVELRSG 152 (1102)
T ss_pred HHHHHHHcc
Confidence 555555433
No 398
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.29 E-value=1.8 Score=51.53 Aligned_cols=123 Identities=15% Similarity=0.055 Sum_probs=89.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChH----HHHHHHHHHHHcCCHHHH
Q 001755 217 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE----IHLFAARFKEQNGDIDGA 292 (1017)
Q Consensus 217 ~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~----i~l~~a~~ee~~g~~~~A 292 (1017)
..+.+.+..+.++.+...|+..-+.+.-++++...|++++|...|++|+..- ..-+. .+..++-.+.-+.++++|
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ-SEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4577889999999999999977666777888888999999999999988521 22122 223346666778999999
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhhcC
Q 001755 293 RAAYQLVHTETSPGLLEAIIKHANMERRLGNL-------EDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 293 r~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~-------e~A~~iye~al~~~~~ 340 (1017)
...|.++..+..=...-..+..|.++..+|+. ++|..+|+++-.....
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999976532222222334445567778888 8888888888776653
No 399
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.23 E-value=0.17 Score=59.64 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=55.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
..++||||+...+..+-++.+...||.|.++. +.. |||.+|..+....+|+.. ....++|..+.+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~k---r~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWK---RDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhh---hhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 37999999999999999999999999998643 222 999999999999999887 5788888876553
No 400
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.92 E-value=4.4 Score=46.47 Aligned_cols=139 Identities=15% Similarity=0.071 Sum_probs=94.8
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------------------------CCCHHHH---HHHHHHHHHc
Q 001755 201 VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------------------------ANYPEYW---IRYVLCMEAS 251 (1017)
Q Consensus 201 ~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~--------------------------p~~~~lW---~~ya~~l~~~ 251 (1017)
|-+++......+.+..+|+...|..+.||||-.+ +.|-.+| ++|+..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 3344699999999999999887777777776443 2333455 4667777778
Q ss_pred CCHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhcCCC----cHHHHHHHHHHHHHcCCH-
Q 001755 252 GSMDLAHNALARATHVFVKR-LPEIHLFAARFK-EQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNL- 324 (1017)
Q Consensus 252 g~~e~A~~v~~rAl~~~~p~-~~~i~l~~a~~e-e~~g~~~~Ar~iy~~~~~~l~P~----~~~~~~~~a~~e~r~g~~- 324 (1017)
|.+..|.++.+=.+.+. |. +|---+.+..++ .+.++++--.++++........+ .+..-+..+-.+.++++.
T Consensus 117 G~~rTAlE~~KlLlsLd-p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~ 195 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLD-PDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEE 195 (360)
T ss_pred CcHHHHHHHHHHHHhcC-CCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcc
Confidence 99999999988788765 55 777666666665 56778877777777653310111 112334444445555665
Q ss_pred --------------HHHHHHHHHHHHhhcC
Q 001755 325 --------------EDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 325 --------------e~A~~iye~al~~~~~ 340 (1017)
+.|...+.+|+...|.
T Consensus 196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 196 SSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8999999999998864
No 401
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.79 E-value=0.33 Score=34.47 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALARATHV 267 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~rAl~~ 267 (1017)
++|+..+.++...|++++|...|++|+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666666666666666666666666664
No 402
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=30 Score=40.14 Aligned_cols=199 Identities=14% Similarity=0.143 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhc--CCCcHH----HHHHHHHHHHHcC
Q 001755 253 SMDLAHNALARATHVFVKR---LPEIHLFAARFKEQ-NGDIDGARAAYQLVHTET--SPGLLE----AIIKHANMERRLG 322 (1017)
Q Consensus 253 ~~e~A~~v~~rAl~~~~p~---~~~i~l~~a~~ee~-~g~~~~Ar~iy~~~~~~l--~P~~~~----~~~~~a~~e~r~g 322 (1017)
++..+..+++..+. +.+. ...-++.++.++.. ..|++-|+..+++++... -|++.+ +...++.++....
T Consensus 24 kIkk~IkClqA~~~-~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~ 102 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQ-FQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLA 102 (629)
T ss_pred hHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhc
Confidence 44455555543332 2222 23345566665543 367777777777765322 355433 3444555555555
Q ss_pred -CHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHH------HHHHHHhh
Q 001755 323 -NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE------ALIHFESI 395 (1017)
Q Consensus 323 -~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~------~~a~~E~~ 395 (1017)
.+..|+.+++++++...+.-- -.-.+..++|.+... .+|+.-|.+++.-..+....-...|. ...++...
T Consensus 103 ~s~~~~KalLrkaielsq~~p~--wsckllfQLaql~~i-dkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~m 179 (629)
T KOG2300|consen 103 QSFPPAKALLRKAIELSQSVPY--WSCKLLFQLAQLHII-DKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIM 179 (629)
T ss_pred CCCchHHHHHHHHHHHhcCCch--hhHHHHHHHHHHHhh-hccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHh
Confidence 888999999999998765421 112355677777444 88999999886655443221112222 22222233
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH----HHHHhhCCHHHHHHHHHHHHHhcC
Q 001755 396 QSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL----EFLGLFGDAQLIKKAEDRHARLFL 460 (1017)
Q Consensus 396 ~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l----~fe~~~Gd~~~~~~~~~r~~~~~~ 460 (1017)
..+..+++.+............. ++.+++.|--.|+ .+...-|....++.+.++.++...
T Consensus 180 e~d~~dV~~ll~~~~qi~~n~~s-----dk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 180 ERDDYDVEKLLQRCGQIWQNISS-----DKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred CccHHHHHHHHHHHHHHHhccCC-----ChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 33444455555555555544333 2344444444443 345556788888888777666554
No 403
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=91.71 E-value=0.38 Score=56.09 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCCeeEeeEEee--cCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEec
Q 001755 896 FEIEEEFQNFGRIKPDGVFVR--NRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 958 (1017)
Q Consensus 896 ~~L~~~F~~~G~i~~v~i~~~--~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~~ 958 (1017)
++++.-+++||.|++|.|... +.....+-|..||+|.+.+++++|.+. .|..|+||.|...+-
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 355667789999999765322 111233567899999999999999998 699999999887653
No 404
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.50 E-value=0.23 Score=54.50 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=59.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCC-eeE--eeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGR-IKP--DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~-i~~--v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
..|-.++||+.++.++|-++|..|.. |+. |++ +. +..|++.|-|||+|.+.+++..|... .+..+.+|-|.|-.
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHm-v~-N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHM-VL-NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEE-EE-cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 57899999999999999999998874 333 443 32 34588899999999999999999887 45555688888754
Q ss_pred c
Q 001755 958 R 958 (1017)
Q Consensus 958 ~ 958 (1017)
.
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 3
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.41 E-value=0.31 Score=55.88 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 330 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~i 330 (1017)
.+.++.|...|.+|+++. |++..++-.-+....+.+++..|..=+.+++ +++|.+...|++.+....+++.+.+|+..
T Consensus 17 ~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kai-e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAI-ELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhh-hcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 355666667777777644 6666666666666666667766766666655 45777777777777777777777777777
Q ss_pred HHHHHHhhcCC
Q 001755 331 YEQAIAIEKGK 341 (1017)
Q Consensus 331 ye~al~~~~~~ 341 (1017)
|+......|++
T Consensus 95 l~~~~~l~Pnd 105 (476)
T KOG0376|consen 95 LEKVKKLAPND 105 (476)
T ss_pred HHHhhhcCcCc
Confidence 77777777765
No 406
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=91.37 E-value=2 Score=47.36 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=62.4
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 880 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 880 ~~~~l~V~nl~~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
+++-+.|-+|.. .+.-+.|-.+|..||.|..|+. ++.+ .|-|.|++.|..++++||.. |+..+-|.+|.|..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkF-mkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKF-MKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEE-eecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 578999999976 4677889999999999999774 3322 37899999999999999988 78888888999877
Q ss_pred ccC
Q 001755 958 RRP 960 (1017)
Q Consensus 958 ~r~ 960 (1017)
.+.
T Consensus 360 SkQ 362 (494)
T KOG1456|consen 360 SKQ 362 (494)
T ss_pred ccc
Confidence 653
No 407
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=91.37 E-value=0.45 Score=52.81 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=60.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCe-EEEEE
Q 001755 879 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR-QVYIE 956 (1017)
Q Consensus 879 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~-~l~Ve 956 (1017)
++..+|...|+|.++++++|+.+|..-|-..+..... ++.+-++.+.+++.+.|-.|+-. ..+.+++. .|+|.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 4568999999999999999999999888765432222 23445999999999999988876 57788765 69999
Q ss_pred eccC
Q 001755 957 ERRP 960 (1017)
Q Consensus 957 ~~r~ 960 (1017)
+.+.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 8764
No 408
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=4.3 Score=42.80 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 001755 238 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 316 (1017)
Q Consensus 238 ~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~ 316 (1017)
..+.++|+++++..+++-++.+.-...|... |.+.++++.-|+.....=+.++|++-|..++ +++|....+..+-..
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL-~ldpslasvVsrElr 306 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVL-ELDPSLASVVSRELR 306 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHH-hcChhhHHHHHHHHH
Confidence 4578899999999999999998888888744 8889999999888888889999999999987 578887666555443
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.00 E-value=8.5 Score=44.10 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=41.2
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 216 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 268 (1017)
Q Consensus 216 ~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~ 268 (1017)
..+|.+..+.+ |..+|.+.+..+.++.++...|+.+.|.++++||+-++
T Consensus 22 ~~~Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~ 70 (360)
T PF04910_consen 22 QSHDPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF 70 (360)
T ss_pred HccCHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34577766544 57899999999999999999999999999999998654
No 410
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=90.95 E-value=2.5 Score=40.07 Aligned_cols=109 Identities=10% Similarity=0.142 Sum_probs=62.1
Q ss_pred cchHHHHHHhccc-ChhhhhccccCCceEEEEcCCccccccchHHHHHHhhcCCCc--ceeEEeeeccccCCCceEEEEE
Q 001755 573 SYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLVMVS 649 (1017)
Q Consensus 573 ~~Fv~~YY~~l~~-~p~~l~~fY~~~ss~~~~~g~~~~~~~~~~~I~~~i~~l~~~--~~~i~~~d~q~s~~~~ilv~V~ 649 (1017)
...+..|+..+++ +++.+..+|.+++.+....|....|...|.+.-+.+...... .+.++....+-..++.+++.+.
T Consensus 7 ~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~~~ 86 (128)
T TIGR02246 7 RALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVHAI 86 (128)
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEEEE
Confidence 3578889988855 999999999999998744555555655555433333322222 2333333322222233333333
Q ss_pred EEEEecCCccc---cceeEEEEEEEeCCeEEEEcc
Q 001755 650 GSVKTKEFCRR---RKFVQTFFLAPQEKGYFVLND 681 (1017)
Q Consensus 650 G~~~~~~~~~~---~~F~q~F~L~~~~~~y~V~nD 681 (1017)
..+...+.... ....-||++...+++|.|..|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~ 121 (128)
T TIGR02246 87 QTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAAD 121 (128)
T ss_pred EEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEec
Confidence 33444322111 234456677788899999988
No 411
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.73 E-value=0.58 Score=33.10 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001755 309 EAIIKHANMERRLGNLEDAFSLYEQAIAIEK 339 (1017)
Q Consensus 309 ~~~~~~a~~e~r~g~~e~A~~iye~al~~~~ 339 (1017)
++|+.++.++..+|++++|...|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566777777777777777777777776655
No 412
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=90.70 E-value=12 Score=43.24 Aligned_cols=12 Identities=0% Similarity=0.050 Sum_probs=6.6
Q ss_pred CHHHHHHHHHhC
Q 001755 933 DISGVQNAIQAS 944 (1017)
Q Consensus 933 ~~~~a~~Al~~~ 944 (1017)
+.+.++.+....
T Consensus 301 ~~~~l~~~Fk~F 312 (419)
T KOG0116|consen 301 TPAELEEVFKQF 312 (419)
T ss_pred CHHHHHHHHhhc
Confidence 455566665543
No 413
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=90.68 E-value=0.33 Score=50.80 Aligned_cols=76 Identities=25% Similarity=0.277 Sum_probs=60.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C----CCcccCeEEEEE
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S----PIQLAGRQVYIE 956 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~----~~~i~g~~l~Ve 956 (1017)
..|||.||+..++-+.|.+.|+.||+|...-+.+.++ ++.-+=++|+|...-.+.+|+.. + +....++.+-|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r--~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR--GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc--ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 6899999999999999999999999998764444443 56667889999999999998876 2 455667777776
Q ss_pred ecc
Q 001755 957 ERR 959 (1017)
Q Consensus 957 ~~r 959 (1017)
...
T Consensus 110 P~e 112 (275)
T KOG0115|consen 110 PME 112 (275)
T ss_pred hhh
Confidence 543
No 414
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.60 E-value=0.1 Score=57.09 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 330 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~i 330 (1017)
.|.++.|.+.|.+|+.+. |....+|-..+....+++....|++-|..++ +++|+...-+.-++..++.+|+.++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~-ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI-EINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh-ccCcccccccchhhHHHHHhhchHHHHHH
Confidence 356777777777777744 6666666666777777777777777777765 46777777777777777778888888888
Q ss_pred HHHHHHhhcCC
Q 001755 331 YEQAIAIEKGK 341 (1017)
Q Consensus 331 ye~al~~~~~~ 341 (1017)
|..++++.-+.
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 88777765543
No 415
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.40 E-value=0.53 Score=34.20 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001755 310 AIIKHANMERRLGNLEDAFSLYEQAIAIEK 339 (1017)
Q Consensus 310 ~~~~~a~~e~r~g~~e~A~~iye~al~~~~ 339 (1017)
+|..+++++.+.|++++|+.+|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467888999999999999999999775543
No 416
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.39 E-value=2.2 Score=43.57 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcH-HHHHHHHH
Q 001755 242 IRYVLCMEASGSMDLAHNALARATHVFVKRL----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHAN 316 (1017)
Q Consensus 242 ~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~----~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~-~~~~~~a~ 316 (1017)
+.++.-....++++.|...++.++. . +.+ .-+-+.+|++...+|.+|+|.+.++..- .+... ..-...++
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~-~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---~~~w~~~~~elrGD 167 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALA-Q-TKDENLKALAALRLARVQLQQKKADAALKTLDTIK---EESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHc-c-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---cccHHHHHHHHhhh
Confidence 4555666678899999999999886 2 433 3345667999999999999999998842 23222 23455788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcC
Q 001755 317 MERRLGNLEDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 317 ~e~r~g~~e~A~~iye~al~~~~~ 340 (1017)
++...|+-++||.-|++++....+
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCC
Confidence 999999999999999999998744
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.03 E-value=1.3 Score=51.62 Aligned_cols=106 Identities=19% Similarity=0.155 Sum_probs=83.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHH
Q 001755 280 ARFKEQNGDIDGARAAYQLVHTETSPGLLE-AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 358 (1017)
Q Consensus 280 a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~-~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l 358 (1017)
+.+....|+...|.+++.+++. +.|.... -+.++++++...|-.-.|-.++.+++.+.-.. +.+.+..++..
T Consensus 614 glywr~~gn~~~a~~cl~~a~~-~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se------pl~~~~~g~~~ 686 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALN-LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSE------PLTFLSLGNAY 686 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhc-cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC------chHHHhcchhH
Confidence 4444567999999999999875 4665333 37889999999998899999999999988443 45666667764
Q ss_pred HHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 001755 359 HLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 393 (1017)
Q Consensus 359 ~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E 393 (1017)
.. ++++++|.+.|+.|++..|.++..-..+..+.
T Consensus 687 l~-l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 687 LA-LKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HH-HhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 44 89999999999999999999987665555443
No 418
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.00 E-value=0.66 Score=32.81 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 239 EYWIRYVLCMEASGSMDLAHNALARATHVF 268 (1017)
Q Consensus 239 ~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~ 268 (1017)
++|+.++.++...|++++|...|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456666666666666666666666666643
No 419
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.44 E-value=10 Score=40.55 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhh-cCCChHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPEYW-IRYVLCMEASGSMDLAHNALARATHVF-VKRLPEIHL 277 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~~~-----p~~~~lW-~~ya~~l~~~g~~e~A~~v~~rAl~~~-~p~~~~i~l 277 (1017)
.+....+......+++++....|.+.|... .++.+-- .....|.....+++...+.|+--+... ..++..+|+
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWF 145 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWF 145 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeee
Confidence 345556666677788888888888777543 3444333 333444445667777777887666533 124666776
Q ss_pred H----HHHHHHHcCCHHHHHHHHHHHhhhc-----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 001755 278 F----AARFKEQNGDIDGARAAYQLVHTET-----------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE 342 (1017)
Q Consensus 278 ~----~a~~ee~~g~~~~Ar~iy~~~~~~l-----------~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~ 342 (1017)
. ++.++...+++.+..+++..+...+ ....+++|-.-++++..+.+-.+...+|++++.....--
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 4 6888877888888888887653211 233566777777888888888999999999998765443
Q ss_pred ccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCC
Q 001755 343 HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 381 (1017)
Q Consensus 343 ~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~ 381 (1017)
|...+..+..+=+.+-.+ .|.+++|-.-|=.|++....
T Consensus 226 HPlImGvIRECGGKMHlr-eg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 226 HPLIMGVIRECGGKMHLR-EGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred chHHHhHHHHcCCccccc-cchHHHHHhHHHHHHhcccc
Confidence 322222222222333333 78888888888888876544
No 420
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.32 E-value=0.65 Score=53.39 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=88.2
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHH
Q 001755 216 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 295 (1017)
Q Consensus 216 ~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~i 295 (1017)
..+.++.|+.+|.+||...|++..+|-.-+..+.+.+++-.|..=+.+|+++. |.....++.-|......+.+.+|+..
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999965 88888888889999999999999999
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHH
Q 001755 296 YQLVHTETSPGLLEAIIKHANME 318 (1017)
Q Consensus 296 y~~~~~~l~P~~~~~~~~~a~~e 318 (1017)
|+.+. .+.|+...+...+-...
T Consensus 95 l~~~~-~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 95 LEKVK-KLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHhh-hcCcCcHHHHHHHHHHH
Confidence 99975 57999887766654443
No 421
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.00 E-value=19 Score=42.57 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 001755 207 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 286 (1017)
Q Consensus 207 W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~ 286 (1017)
-.+.+.|+++.|-. |.||....+ ++.-+.+ ..+.|+++.|.++.+. -+++..|-.++.....+
T Consensus 298 ~~~i~~fL~~~G~~-------e~AL~~~~D-~~~rFeL---Al~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 298 GQSIARFLEKKGYP-------ELALQFVTD-PDHRFEL---ALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHTT-H-------HHHHHHSS--HHHHHHH---HHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCH-------HHHHhhcCC-hHHHhHH---HHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHc
Confidence 45556677777744 444444433 4444433 3456777776654421 24678899999988899
Q ss_pred CCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHH
Q 001755 287 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 366 (1017)
Q Consensus 287 g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e 366 (1017)
|+++-|..+|+++- . +-.+.-++.-.|+.+..+++.+.|..... +.+.+..+ +. +|+++
T Consensus 361 g~~~lAe~c~~k~~-d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----------~n~af~~~-~~-lgd~~ 419 (443)
T PF04053_consen 361 GNIELAEECYQKAK-D--------FSGLLLLYSSTGDREKLSKLAKIAEERGD----------INIAFQAA-LL-LGDVE 419 (443)
T ss_dssp TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----------HHHHHHHH-HH-HT-HH
T ss_pred CCHHHHHHHHHhhc-C--------ccccHHHHHHhCCHHHHHHHHHHHHHccC----------HHHHHHHH-HH-cCCHH
Confidence 99999999988842 1 33444456667888877777766655422 11222222 12 78888
Q ss_pred HHHHHHHHH
Q 001755 367 KARQILVDS 375 (1017)
Q Consensus 367 ~Ar~i~~~a 375 (1017)
++.++|.+.
T Consensus 420 ~cv~lL~~~ 428 (443)
T PF04053_consen 420 ECVDLLIET 428 (443)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 888877664
No 422
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.94 E-value=0.55 Score=48.75 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=50.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 213 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 271 (1017)
Q Consensus 213 ~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~ 271 (1017)
...+.++.+.+..+|.|+|...|....-|++++.+.++.|+++.|...|++.+++..+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567888889999999999999999999999999999999999999999999866333
No 423
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.90 E-value=1.1 Score=47.73 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEEe
Q 001755 896 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 957 (1017)
Q Consensus 896 ~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve~ 957 (1017)
+++++...+||.|..|-|+.....--.-----||+|+..+++.+|+-. ||..|+||.++..+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 466778889999999866544221111123479999999999999876 89999999987755
No 424
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.87 E-value=0.43 Score=58.07 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=61.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccC--eEEEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 956 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g--~~l~Ve 956 (1017)
..+.+||++|+.++....|...|..||.|..|++ +. +--|++|.+++...++.|+.. .|..|+| +.|+|+
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeec--cc-----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 5689999999999999999999999999997543 22 235999999999999999987 6888886 558888
Q ss_pred ecc
Q 001755 957 ERR 959 (1017)
Q Consensus 957 ~~r 959 (1017)
++.
T Consensus 527 la~ 529 (975)
T KOG0112|consen 527 LAS 529 (975)
T ss_pred ccc
Confidence 765
No 425
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.84 E-value=0.39 Score=53.31 Aligned_cols=72 Identities=28% Similarity=0.428 Sum_probs=55.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C-CCcccCeEEEEEecc
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S-PIQLAGRQVYIEERR 959 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~-~~~i~g~~l~Ve~~r 959 (1017)
..+|++||.+.++.++|+.+|...----+-.+++ -.||+||...+..-+.+|++. + ...+.|+++.|+..-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999997442111111233 137999999999999999998 4 578999999998654
Q ss_pred C
Q 001755 960 P 960 (1017)
Q Consensus 960 ~ 960 (1017)
+
T Consensus 75 ~ 75 (584)
T KOG2193|consen 75 P 75 (584)
T ss_pred h
Confidence 4
No 426
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.78 E-value=0.79 Score=31.99 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCC
Q 001755 351 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 382 (1017)
Q Consensus 351 ~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~ 382 (1017)
+..+|....+ .|++++|+++|+++++.+|++
T Consensus 3 ~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence 4456666666 999999999999999999985
No 427
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=88.78 E-value=2.3 Score=39.74 Aligned_cols=108 Identities=10% Similarity=0.079 Sum_probs=65.4
Q ss_pred chHHHHHHhc-ccChhhhhccccCCceEEEEcCC-ccccccchHHHHHH-hhcCCCcceeEEeeeccccCCCceEEEEEE
Q 001755 574 YFVGQYYQVL-QQQPDLVHQFYSDASSMIRVDGD-STESASSMLDIHSL-VISLNFTAIEIKTINSLGSWNGGVLVMVSG 650 (1017)
Q Consensus 574 ~Fv~~YY~~l-~~~p~~l~~fY~~~ss~~~~~g~-~~~~~~~~~~I~~~-i~~l~~~~~~i~~~d~q~s~~~~ilv~V~G 650 (1017)
.++++|++.+ ..+-+.+..+|.++.+++..+.. ...|...+.+.-+. +..++.-.+.+..+..+.. ++.+++...+
T Consensus 3 ~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~a~~~~~~ 81 (121)
T PF13474_consen 3 ALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVS-GDVAVVTGEF 81 (121)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEEC-CCEEEEEEEE
Confidence 5788888877 55778999999988888642222 23455554433222 2223222234445555543 3445555555
Q ss_pred EEEe--cCCccccceeEEEEEEEeCCeEEEEcce
Q 001755 651 SVKT--KEFCRRRKFVQTFFLAPQEKGYFVLNDI 682 (1017)
Q Consensus 651 ~~~~--~~~~~~~~F~q~F~L~~~~~~y~V~nDi 682 (1017)
.+.. ++......+..||+|...+++|.|.+.=
T Consensus 82 ~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H 115 (121)
T PF13474_consen 82 RLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIH 115 (121)
T ss_dssp EEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCccceeeEEEEEEEEEECCEEEEEEEE
Confidence 5543 3333356789999999999999998763
No 428
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=13 Score=41.00 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 248 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~-~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l 248 (1017)
.-|-+.+.+-.++..|.++|+. ..-|+. +.-++.+.+....-.|++.+++.-..++|...|.+...+++=+.++
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~-----kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKK-----KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhh-----cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3344555555556666666643 112221 2344555555555556666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHH
Q 001755 249 EASGSMDLAHNALARAT 265 (1017)
Q Consensus 249 ~~~g~~e~A~~v~~rAl 265 (1017)
....++++|.+-.+..+
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 65555555554444443
No 429
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.61 E-value=4 Score=41.71 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhc-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHH
Q 001755 275 IHLFAARFKEQNGDIDGARAAYQLVHTET-S-PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 352 (1017)
Q Consensus 275 i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l-~-P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~ 352 (1017)
.|..+|.++.+.|++++|.+.|.++.... . -...++++..+.+..-.+++..+.....++-.......+......+-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455555556666666666666543211 0 112445555555555566666666666555554433211000111112
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhhhcC
Q 001755 353 QYSRFLHLVSRNAEKARQILVDSLDHVQ 380 (1017)
Q Consensus 353 ~~a~~l~~~~g~~e~Ar~i~~~al~~~P 380 (1017)
.-+-... ..+++.+|-+.|-.++..+.
T Consensus 118 ~~gL~~l-~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 118 YEGLANL-AQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHH-HhchHHHHHHHHHccCcCCC
Confidence 2222222 37888888888888776554
No 430
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.46 E-value=35 Score=42.69 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=113.2
Q ss_pred hhhHhhhhccCCcccCCCCcchHHHHHHHH-HHHHHcCChHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHcCCHH
Q 001755 182 IIGFETAIRRPYFHVKPLSVTELENWHNYL-DFIERDGDFNKVVKLYERCLIACANYPE-----YWIRYVLCMEASGSMD 255 (1017)
Q Consensus 182 ~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl-~~e~~~g~~~~a~~lyeraL~~~p~~~~-----lW~~ya~~l~~~g~~e 255 (1017)
|..+|..++.+ ........+..|..+- .+....|+++.+..+.++++...|.... .....+....-.|+++
T Consensus 438 i~~l~~~l~~~---~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~ 514 (894)
T COG2909 438 IARLEHFLKAP---MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELT 514 (894)
T ss_pred HHHHHHHhCcC---cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHH
Confidence 34456666543 1112333445676663 4557789999999999999999876432 2233444445579999
Q ss_pred HHHHHHHHHHHhhcCC---ChHHHHHH--HHHHHHcCCH--HHHHHHHHHHhhh---cCCCcHHHHHHHHHHHHHcCCHH
Q 001755 256 LAHNALARATHVFVKR---LPEIHLFA--ARFKEQNGDI--DGARAAYQLVHTE---TSPGLLEAIIKHANMERRLGNLE 325 (1017)
Q Consensus 256 ~A~~v~~rAl~~~~p~---~~~i~l~~--a~~ee~~g~~--~~Ar~iy~~~~~~---l~P~~~~~~~~~a~~e~r~g~~e 325 (1017)
.|+.+..++.+..-.. .-.+|..+ +.+++.+|+. .+....|...... -.|.+--...-++.+++..-+++
T Consensus 515 ~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~ 594 (894)
T COG2909 515 QALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLD 594 (894)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHh
Confidence 9999998888754222 22333333 6677788832 2333333332211 12322223333444433333344
Q ss_pred HHHHHHHHHHHhhcCCCccCcHHH-HHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCC--HHHHHHHHH
Q 001755 326 DAFSLYEQAIAIEKGKEHSQTLPM-LYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIH 391 (1017)
Q Consensus 326 ~A~~iye~al~~~~~~~~~~~~~~-l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~--~~lw~~~a~ 391 (1017)
.+..-...+++........+.... .+..+|++++. .|++++|...+.+.......+ ...|...+.
T Consensus 595 ~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~-~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 595 LAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL-RGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred hhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 444444444443332221111111 22367777776 999999999998877654443 345555444
No 431
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.32 E-value=0.81 Score=31.92 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001755 310 AIIKHANMERRLGNLEDAFSLYEQAIAIEKG 340 (1017)
Q Consensus 310 ~~~~~a~~e~r~g~~e~A~~iye~al~~~~~ 340 (1017)
+++.++.++.+.|+.++|+.+|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666677777777777777766654
No 432
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.13 E-value=2.3 Score=46.78 Aligned_cols=93 Identities=14% Similarity=0.031 Sum_probs=64.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 001755 245 VLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 321 (1017)
Q Consensus 245 a~~l~~~g~~e~A~~v~~rAl~~~~p~---~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~ 321 (1017)
+..+.+.+++..|+..|.+++..-+++ +.-+|.+.|....-.||+-.|+.-..+++ .++|.++.++++-+.++..+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al-~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL-KLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhhhhhhHHHHHH
Confidence 444555556666666666666644332 33344455555666788877777777766 47999999999999998888
Q ss_pred CCHHHHHHHHHHHHHhh
Q 001755 322 GNLEDAFSLYEQAIAIE 338 (1017)
Q Consensus 322 g~~e~A~~iye~al~~~ 338 (1017)
..++.|....+..+...
T Consensus 167 e~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 88888888777766554
No 433
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=88.05 E-value=2.8 Score=41.69 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=7.6
Q ss_pred cCCCeeEeeEEee
Q 001755 904 NFGRIKPDGVFVR 916 (1017)
Q Consensus 904 ~~G~i~~v~i~~~ 916 (1017)
-||.|.++.+.|+
T Consensus 97 IfG~i~d~~fsIK 109 (215)
T KOG3262|consen 97 IFGPINDVHFSIK 109 (215)
T ss_pred hcccccccEEEEe
Confidence 3677776655443
No 434
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.96 E-value=0.74 Score=50.87 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=56.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEe--ecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEE
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV--RNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 955 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~--~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~V 955 (1017)
.-|-|.||.+.++.++++.+|...|+|..+.+.- ++..-....-.|||.|.|...+..|--+..+.+-|+-|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEE
Confidence 4889999999999999999999999999876532 2222222345899999999988887666556666666555
No 435
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.95 E-value=47 Score=36.58 Aligned_cols=104 Identities=11% Similarity=-0.026 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhhcC----CCccC----cHHHHHHHHHHHHHH--hhCCHHHHHHHHHHHhhhc
Q 001755 311 IIKHANMERRLG-NLEDAFSLYEQAIAIEKG----KEHSQ----TLPMLYAQYSRFLHL--VSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 311 ~~~~a~~e~r~g-~~e~A~~iye~al~~~~~----~~~~~----~~~~l~~~~a~~l~~--~~g~~e~Ar~i~~~al~~~ 379 (1017)
.+..+.-....+ +++.|...++++.+.... ...+. ....++..++..+.. .....++|.++++.+-...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 444444455555 777777777777776421 11111 112223334444332 1245677888888888888
Q ss_pred CCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCC
Q 001755 380 QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 417 (1017)
Q Consensus 380 P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~ 417 (1017)
|+.+.++.-.+++-...++. +.+.+.+.+.+....
T Consensus 118 ~~~~~~~~L~l~il~~~~~~---~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDE---EEYEEILMRMIRSVD 152 (278)
T ss_pred CCCcHHHHHHHHHHhccCCh---hHHHHHHHHHHHhcc
Confidence 88777775555555443333 667777777777643
No 436
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.82 E-value=17 Score=36.27 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 286 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 337 (1017)
Q Consensus 286 ~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~ 337 (1017)
.++.+.+..++..+ .-+.|+..++-+--+.++.+.|++++|+.+|+.+...
T Consensus 23 ~~~~~D~e~lL~AL-rvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 23 LGDPDDAEALLDAL-RVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cCChHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34555555555543 2345555555555555555555555555555554433
No 437
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.73 E-value=0.38 Score=52.86 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=74.1
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHH
Q 001755 215 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 294 (1017)
Q Consensus 215 ~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~ 294 (1017)
...|.++.++.+|-+++..+|....++-..+..+.++++...|..=+..|++++ ++...-+-+-+..+..+|+.++|..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHH
Confidence 356789999999999999999999999999999999999999999999999865 7666656666666777899999999
Q ss_pred HHHHHhh
Q 001755 295 AYQLVHT 301 (1017)
Q Consensus 295 iy~~~~~ 301 (1017)
.|..++.
T Consensus 204 dl~~a~k 210 (377)
T KOG1308|consen 204 DLALACK 210 (377)
T ss_pred HHHHHHh
Confidence 9998874
No 438
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.68 E-value=24 Score=41.81 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhc------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001755 220 FNKVVKLYERCLIAC------------ANYPEYWIRYVLCMEASGSMDLAHNALARATH 266 (1017)
Q Consensus 220 ~~~a~~lyeraL~~~------------p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~ 266 (1017)
++++...|.-|++.. |.+.+-.+..+.+...+|+.+.|..+.+|||=
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 455555555555443 44445555556665566666666666666553
No 439
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.66 E-value=31 Score=41.76 Aligned_cols=29 Identities=17% Similarity=0.008 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 001755 431 LSCVFLEFLGLFGDAQLIKKAEDRHARLF 459 (1017)
Q Consensus 431 l~~~~l~fe~~~Gd~~~~~~~~~r~~~~~ 459 (1017)
+...|..|+++-|..+++.+.|-+++++.
T Consensus 997 vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 997 VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 67778889999999999999999888764
No 440
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.66 E-value=63 Score=37.72 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=106.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhc---C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHH----
Q 001755 211 LDFIERDGDFNKVVKLYERCLIAC---A-------NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH---- 276 (1017)
Q Consensus 211 l~~e~~~g~~~~a~~lyeraL~~~---p-------~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~---- 276 (1017)
+....-.|++..|+.-...+..-| | ..+.+.+-++.+....+.++.|...|..|++.- ...++|
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t--~~~dl~a~~n 407 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT--ESIDLQAFCN 407 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh--hHHHHHHHHH
Confidence 333355678777666555555444 2 234566777778888889999999999998854 333443
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHH
Q 001755 277 LFAARFKEQNGDIDGARAAYQLVHTETSPGL-------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 349 (1017)
Q Consensus 277 l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~-------~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~ 349 (1017)
+++|-.+.+.++-+.-.++++.+.. .+... ..+++-++-+....+++.+|+..+.+.++..... +...+-.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~p-~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae-d~~rL~a 485 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIGP-LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE-DLNRLTA 485 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCC-CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh-hHHHHHH
Confidence 3468888888887777777776421 11111 2356667778888999999999999999887432 2111111
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHhhhc
Q 001755 350 LYAQYSRFLHLVSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 350 l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~ 379 (1017)
+..-+...+....||-.+++++..-++..-
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 222222223445899999999998888643
No 441
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=87.48 E-value=9.8 Score=45.48 Aligned_cols=77 Identities=13% Similarity=0.023 Sum_probs=57.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEec
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 958 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~ 958 (1017)
+.+.+-+++.+++.+..+++++|... .|..+++ ..+...+...|-++|+|....++++|+..|..++-.|.+.|...
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l-~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDL-SENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccch-hhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 34667778999999999999999643 2334333 22333333368999999999999999999888888888877644
No 442
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.21 E-value=68 Score=37.66 Aligned_cols=178 Identities=13% Similarity=-0.044 Sum_probs=119.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 001755 207 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 286 (1017)
Q Consensus 207 W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~ 286 (1017)
...+++...++....-+..++.|.|...-+ .-.++.+++++..+ ..+.--.+++|.++.+ -++..+--.++..+|+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~~yEk- 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHHHHHH-
Confidence 344555544444555678889998887654 56677888888877 4667788999998843 6677777888999987
Q ss_pred CCHHHHHHHHHHHhhhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHh
Q 001755 287 GDIDGARAAYQLVHTETSPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 361 (1017)
Q Consensus 287 g~~~~Ar~iy~~~~~~l~P~-----~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~ 361 (1017)
++...+...|.+++-..-|. -.++|-++..+- -.+.|.-..+..+.-....... ..+..+...--|..
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~-----~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGR-----GSVLMQDVYKKYSE 217 (711)
T ss_pred hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHhcc
Confidence 88889999999987555552 233455544221 2455655555555444433321 23333333223455
Q ss_pred hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhh
Q 001755 362 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 395 (1017)
Q Consensus 362 ~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~ 395 (1017)
..++++|.+++...|+.+-.+..+-..++.+...
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 7899999999999999998877777777776543
No 443
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=87.18 E-value=1.7 Score=50.61 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=58.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHh-cCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcc---cCeEEE
Q 001755 880 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL---AGRQVY 954 (1017)
Q Consensus 880 ~~~~l~V~nl~~~~t~~~L~~~F~-~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i---~g~~l~ 954 (1017)
.++.|||.||-.-.|.-+|+.++. .+|.|... ++ | +-|..|||.|.+.++|.+.+.+ +|+.. |++.|.
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH--HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 568999999999999999999998 56666652 34 3 2456899999999999988887 67655 677788
Q ss_pred EEecc
Q 001755 955 IEERR 959 (1017)
Q Consensus 955 Ve~~r 959 (1017)
|++.+
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88765
No 444
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.07 E-value=75 Score=37.95 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=93.3
Q ss_pred hHhhhhccCCcccCCCC-----------cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 001755 184 GFETAIRRPYFHVKPLS-----------VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 252 (1017)
Q Consensus 184 ~fE~~I~r~y~~~~~l~-----------~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g 252 (1017)
.||++-+..|..+...+ |-+++.....+++...+|+.+-+..+.+|||-..-. +|.-.. ..-+|
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~---a~hp~F--~~~sg 327 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR---ALHPNF--IPFSG 327 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH---Hhcccc--ccccc
Confidence 48877766555554433 567888889999999999999999999999855311 110000 00000
Q ss_pred CHHHHHHHHHHHHHh--hcCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHH-HHcCCHH
Q 001755 253 SMDLAHNALARATHV--FVKRLPEIH---LFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANME-RRLGNLE 325 (1017)
Q Consensus 253 ~~e~A~~v~~rAl~~--~~p~~~~i~---l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~-~~~~~~~~a~~e-~r~g~~e 325 (1017)
+|++ ..|.+-.++ ..+...+.+.|=+..|.++..-++ .++|. ++-..+.++.++ .|..+|.
T Consensus 328 -----------~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlll-sLdp~eDPl~~l~~ID~~ALrareYq 395 (665)
T KOG2422|consen 328 -----------NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLL-SLDPSEDPLGILYLIDIYALRAREYQ 395 (665)
T ss_pred -----------cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-hcCCcCCchhHHHHHHHHHHHHHhHH
Confidence 0000 001111111 112333445555555666555544 35555 444444444432 3344555
Q ss_pred HHHHHHHHH-----HHhhcCCCccCcHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHhhhcCC
Q 001755 326 DAFSLYEQA-----IAIEKGKEHSQTLPMLYAQYSRFLHLVSR--NAEKARQILVDSLDHVQL 381 (1017)
Q Consensus 326 ~A~~iye~a-----l~~~~~~~~~~~~~~l~~~~a~~l~~~~g--~~e~Ar~i~~~al~~~P~ 381 (1017)
=.+.+++.. +...|+ +.+-+.+|+|+....- +...|+..+.+|++.+|.
T Consensus 396 wiI~~~~~~e~~n~l~~~PN-------~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 396 WIIELSNEPENMNKLSQLPN-------FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHHHhhccHhhcCC-------chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 555555444 222222 2334667777655233 367889999999999874
No 445
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.84 E-value=1.3 Score=32.20 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 001755 241 WIRYVLCMEASGSMDLAHNALARAT 265 (1017)
Q Consensus 241 W~~ya~~l~~~g~~e~A~~v~~rAl 265 (1017)
|..++.++.+.|++++|..+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555544
No 446
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.81 E-value=13 Score=47.47 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 220 FNKVVKLYERCLIACANYP-EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 298 (1017)
Q Consensus 220 ~~~a~~lyeraL~~~p~~~-~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~ 298 (1017)
++.-++-|++||....... ..|-....+..+++-+.+|..+|.--.+ ....++..||..+.+...+++|.-.|++
T Consensus 889 ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4445555555554432222 2444444555555555555444432221 1344555555555555555555555544
No 447
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.78 E-value=50 Score=35.60 Aligned_cols=184 Identities=14% Similarity=0.032 Sum_probs=98.6
Q ss_pred CCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhhcCCChHHH
Q 001755 199 LSVTELENWHNYLDFIERD-GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD-LAHNALARATHVFVKRLPEIH 276 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~-g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e-~A~~v~~rAl~~~~p~~~~i~ 276 (1017)
++|.++.+|+-.-..+... .++.+-....++.+..+|.+..+|..-=-+.+..|+.. .-+++.++++... .++-.+|
T Consensus 72 lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNYHaW 150 (318)
T KOG0530|consen 72 LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNYHAW 150 (318)
T ss_pred hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccchhhh
Confidence 5777888887665544332 34556666778888888888888887777777677665 5556666666633 3333333
Q ss_pred HHHHHHHHHcCCHHH----HHHHHH------------------------------------HHhhhcCCCcHHHHHHHHH
Q 001755 277 LFAARFKEQNGDIDG----ARAAYQ------------------------------------LVHTETSPGLLEAIIKHAN 316 (1017)
Q Consensus 277 l~~a~~ee~~g~~~~----Ar~iy~------------------------------------~~~~~l~P~~~~~~~~~a~ 316 (1017)
..---+....+.++. |.++++ ..+ .+.|++..+|.-+..
T Consensus 151 shRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I-~~vP~NeSaWnYL~G 229 (318)
T KOG0530|consen 151 SHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI-LLVPNNESAWNYLKG 229 (318)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH-HhCCCCccHHHHHHH
Confidence 331111111122222 111111 111 358888889988888
Q ss_pred HHHH-cC--CHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHH-----HHhhCCHH---HHHHHHHHHh-hhcCCCHH
Q 001755 317 MERR-LG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL-----HLVSRNAE---KARQILVDSL-DHVQLSKP 384 (1017)
Q Consensus 317 ~e~r-~g--~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l-----~~~~g~~e---~Ar~i~~~al-~~~P~~~~ 384 (1017)
++.. .| ...+........+...+. . + +.++..+..++ ....+.-+ +|.++|+.+- +.+|-...
T Consensus 230 ~l~~d~gl~s~s~vv~f~~~l~~~~~~-~-s---P~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~n 304 (318)
T KOG0530|consen 230 LLELDSGLSSDSKVVSFVENLYLQLPK-R-S---PFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKN 304 (318)
T ss_pred HHHhccCCcCCchHHHHHHHHhhccCC-C-C---hhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHH
Confidence 8775 33 122222322222211111 1 1 34443333332 32244444 5666677655 67787777
Q ss_pred HHHHH
Q 001755 385 LLEAL 389 (1017)
Q Consensus 385 lw~~~ 389 (1017)
+|.-.
T Consensus 305 yW~~~ 309 (318)
T KOG0530|consen 305 YWRHK 309 (318)
T ss_pred HHHHH
Confidence 77654
No 448
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=86.60 E-value=3.3 Score=34.18 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=40.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcC----CCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNF----GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 943 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~----G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~ 943 (1017)
..|+|.|+. +++.++++.+|..| ++. . |...|.. .|=|.|.+.+.|.+||.+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~--IEWIdDt------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-R--IEWIDDT------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-e--EEEecCC------cEEEEECCHHHHHHHHHc
Confidence 589999995 68889999999998 543 3 3333432 577999999999999864
No 449
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.88 E-value=11 Score=39.74 Aligned_cols=97 Identities=16% Similarity=0.292 Sum_probs=60.2
Q ss_pred cCChHHHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCH
Q 001755 217 DGDFNKVVKLYERCLIAC----AN---YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI 289 (1017)
Q Consensus 217 ~g~~~~a~~lyeraL~~~----p~---~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~ 289 (1017)
.-+++.|+..|.-||... .. -..+|+++|=++...++.+.....+++|+..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~---------------------- 147 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF---------------------- 147 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH----------------------
Confidence 346778888888877553 11 1346666665555566655555556665553
Q ss_pred HHHHHHHHHHhhhc-CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 290 DGARAAYQLVHTET-SP----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 290 ~~Ar~iy~~~~~~l-~P----~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
|++++..- .| +...+.+..|.+.+|+|++++|...|.+++......
T Consensus 148 ------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 148 ------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred ------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 22222110 11 124566777888899999999999999988776543
No 450
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.84 E-value=18 Score=43.08 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=64.2
Q ss_pred HHHHHHcCChHHHHH----------HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 001755 211 LDFIERDGDFNKVVK----------LYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 280 (1017)
Q Consensus 211 l~~e~~~g~~~~a~~----------lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a 280 (1017)
+++++..|+.++|+. +|+-+-+.+...-+-....+.++.+...+-.|.++|.+.-.. -...
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence 345556666555433 333343444444445555555555555555566565543221 1123
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 281 RFKEQNGDIDGARAAYQLVHTETSPGL-LEAIIKHANMERRLGNLEDAFSLYEQA 334 (1017)
Q Consensus 281 ~~ee~~g~~~~Ar~iy~~~~~~l~P~~-~~~~~~~a~~e~r~g~~e~A~~iye~a 334 (1017)
.+....++.++|.++-++ +|.+ ..+++.+++++....++++|.+.|-+|
T Consensus 781 qlHve~~~W~eAFalAe~-----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEK-----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhh-----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 344456777888776555 4443 357899999999999999988877554
No 451
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=14 Score=46.25 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=65.6
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 330 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~i 330 (1017)
.+++|+|.+.-+|+ +.|.+|..+|....+.|.+.+|++.|-++- +| ..++.-++...+.|++++....
T Consensus 1088 i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyikad---Dp---s~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKAD---DP---SNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhcC---Cc---HHHHHHHHHHHhcCcHHHHHHH
Confidence 34555555544442 468999999999999999999999998852 44 5677777788899999999999
Q ss_pred HHHHHHhhcCCCccCcHHHHHHHHH
Q 001755 331 YEQAIAIEKGKEHSQTLPMLYAQYS 355 (1017)
Q Consensus 331 ye~al~~~~~~~~~~~~~~l~~~~a 355 (1017)
+..|.+....... ...|...||
T Consensus 1156 L~MaRkk~~E~~i---d~eLi~AyA 1177 (1666)
T KOG0985|consen 1156 LLMARKKVREPYI---DSELIFAYA 1177 (1666)
T ss_pred HHHHHHhhcCccc---hHHHHHHHH
Confidence 9998887654322 244555555
No 452
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.72 E-value=1.1 Score=46.57 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=34.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC
Q 001755 247 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG 306 (1017)
Q Consensus 247 ~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~ 306 (1017)
.+.+.++.+.|.++|.+|+.+. |....-|+.++.+.++.|+++.|.+.|++++ +++|.
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L-~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL-ELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHH-cCCcc
Confidence 3344556666666666666643 5556666666666666666666666666654 34554
No 453
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=84.32 E-value=3 Score=49.60 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=5.6
Q ss_pred ccEEEEEECCHH
Q 001755 924 VCYAFVEFEDIS 935 (1017)
Q Consensus 924 kg~aFVeF~~~~ 935 (1017)
.+..||...+..
T Consensus 344 ~ai~l~~~~d~~ 355 (456)
T PRK10590 344 EALSLVCVDEHK 355 (456)
T ss_pred eEEEEecHHHHH
Confidence 344455544433
No 454
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.05 E-value=12 Score=39.61 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcC
Q 001755 308 LEAIIKHANMERRLGNLE-------DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 380 (1017)
Q Consensus 308 ~~~~~~~a~~e~r~g~~e-------~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P 380 (1017)
..++++.+.+++..|+.+ .|...|++++..............++.-.|.+.++ .|++++|...|.+++....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcCCC
Confidence 345666676777666644 45555666655443211111123455556777666 9999999999999997654
Q ss_pred CC
Q 001755 381 LS 382 (1017)
Q Consensus 381 ~~ 382 (1017)
.+
T Consensus 197 ~s 198 (214)
T PF09986_consen 197 AS 198 (214)
T ss_pred CC
Confidence 43
No 455
>PRK10941 hypothetical protein; Provisional
Probab=84.01 E-value=11 Score=41.28 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=57.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001755 213 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 283 (1017)
Q Consensus 213 ~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~e 283 (1017)
.+.+.+++++|..+-++.|...|.++.-|-.-+.++.+.|....|+.=|+..++ .+|..+.+-+.-..+.
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~-~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE-QCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-hCCCchhHHHHHHHHH
Confidence 346788999999999999999999999999999999999999999999999888 4588777665544433
No 456
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.62 E-value=1.6 Score=49.99 Aligned_cols=79 Identities=24% Similarity=0.190 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH-hc-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001755 205 ENWHNYLDFIERDGDFNKVVKLYERCLI-AC-----------------ANYPEYWIRYVLCMEASGSMDLAHNALARATH 266 (1017)
Q Consensus 205 ~~W~~yl~~e~~~g~~~~a~~lyeraL~-~~-----------------p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~ 266 (1017)
-.|.+++....+.+.+.-...+|.+||. .| ....++.++.+..+...|+.-.|-.+|.+|+.
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 4577777766777888889999999996 34 34457888889989889999999999999999
Q ss_pred hhcCCChHHHHHHHHHHH
Q 001755 267 VFVKRLPEIHLFAARFKE 284 (1017)
Q Consensus 267 ~~~p~~~~i~l~~a~~ee 284 (1017)
++ ..+|.+|+.+|....
T Consensus 364 vf-h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 364 VF-HRNPRLWLRLAECCI 380 (696)
T ss_pred HH-hcCcHHHHHHHHHHH
Confidence 88 888999999877653
No 457
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=83.39 E-value=8.2 Score=34.84 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCc
Q 001755 308 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 343 (1017)
Q Consensus 308 ~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~ 343 (1017)
..+++.++.+....|+.++|...+++++.+.....+
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 345777888899999999999999999998876544
No 458
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=82.93 E-value=26 Score=41.75 Aligned_cols=137 Identities=15% Similarity=-0.045 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHH-H-cCChHHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHH
Q 001755 204 LENWHNYLDFIE-R-DGDFNKVVKLYERCLIACANYPEYWIRY--VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 279 (1017)
Q Consensus 204 l~~W~~yl~~e~-~-~g~~~~a~~lyeraL~~~p~~~~lW~~y--a~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~ 279 (1017)
+.+|...+..+. . .+...-++..+...+..++.++++.+.+ ..++...++...+.-.+..++.+. +.....+.++
T Consensus 29 l~ll~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~L 107 (620)
T COG3914 29 LSLLDLAIVLEWLNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVN-PENCPAVQNL 107 (620)
T ss_pred hhhHHHHHHHHHhcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcC-cccchHHHHH
Confidence 446666554442 2 2333335666666777888999998777 344444667767777777788765 6667777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 280 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH------ANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 280 a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~------a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
+..++..|....+...+........|.+.+..... +++..-+|+..++...++++.+..+..
T Consensus 108 ~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 108 AAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 77777788877777777776666778877765555 666777788888888888888777664
No 459
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.62 E-value=10 Score=44.66 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001755 221 NKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-LPEIHLFAARFKEQNGDIDGARAAYQLV 299 (1017)
Q Consensus 221 ~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~-~~~i~l~~a~~ee~~g~~~~Ar~iy~~~ 299 (1017)
+....+.-.+++..+.+..+.+.-+-|-...|+..+|..++.+|+....+. ..-+.+.+|.++.+.|...+|--|+..+
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA 275 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAA 275 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehh
Confidence 345566777788888766665554444444899999999999999744332 3346677899999999998888888776
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 001755 300 HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 341 (1017)
Q Consensus 300 ~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~ 341 (1017)
+. -.|....-++-+++++..++++....-.|..+.+..+..
T Consensus 276 ~~-dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 276 LD-DADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred cc-CCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 53 356666667888888888888888888888888776654
No 460
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=82.50 E-value=5.3 Score=38.37 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=52.8
Q ss_pred CCCccEEEEecCCCCCCH-HHH---HHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEE
Q 001755 878 EGEVKSVYVRNLPSTVTA-FEI---EEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV 953 (1017)
Q Consensus 878 ~~~~~~l~V~nl~~~~t~-~~L---~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l 953 (1017)
+++-.+|.|+-|..++.. +|| -..++.||+|.+|.. . ++--|.|.|.|..+|-.|+.+.+....|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~--c------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL--C------GRQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee--c------CCceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 445678989877665533 344 455689999999653 1 3457999999999999999986656667666
Q ss_pred EEEec
Q 001755 954 YIEER 958 (1017)
Q Consensus 954 ~Ve~~ 958 (1017)
...+-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 66553
No 461
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=82.10 E-value=22 Score=45.65 Aligned_cols=117 Identities=18% Similarity=0.238 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHc----CC-HHHHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCC
Q 001755 238 PEYWIRYVLCMEAS----GS-MDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-TSPG 306 (1017)
Q Consensus 238 ~~lW~~ya~~l~~~----g~-~e~A~~v~~rAl~~~~p-----~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~-l~P~ 306 (1017)
...|.+|+.|+... +. ....+.+++|++..+.. .++.+...|.- ++....+.+++++|..+... +...
T Consensus 34 l~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg~~ 112 (974)
T KOG1166|consen 34 LDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGIGTT 112 (974)
T ss_pred hhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccccch
Confidence 56777777777652 23 45667777777764422 23443333332 33456778889999886532 4567
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHH
Q 001755 307 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 360 (1017)
Q Consensus 307 ~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~ 360 (1017)
+...|..|+.++.+.+.+.+|..+|..+++..... ...|..++..|..+
T Consensus 113 lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP-----~~rL~~~~~~F~~r 161 (974)
T KOG1166|consen 113 LALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEP-----LERLLRQYSNFQQR 161 (974)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----HHHHHHHHHHHHHH
Confidence 77888999999999999999999999998766543 13455666666444
No 462
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.81 E-value=21 Score=42.05 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 001755 172 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 251 (1017)
Q Consensus 172 y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~ 251 (1017)
..+...+..+.-..|.++.- ..|+ ..-.++..+.|+++.|..+.+ .-+++..|.+++...+..
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~------~~D~------~~rFeLAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQF------VTDP------DHRFELALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHH------SS-H------HHHHHHHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHhh------cCCh------HHHhHHHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHc
Confidence 45555666666556666631 1122 223445567787766644322 124788999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001755 252 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLY 331 (1017)
Q Consensus 252 g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iy 331 (1017)
|+++.|..+|+++-. +-.+..++...|+.+.-+++...+.. .-+ ..+ ......-+|++++...+|
T Consensus 361 g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~--~~~-~n~---af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 361 GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE--RGD-INI---AFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH--TT--HHH---HHHHHHHHT-HHHHHHHH
T ss_pred CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH--ccC-HHH---HHHHHHHcCCHHHHHHHH
Confidence 999999999988654 22334445567888887777776532 111 111 112233468888887777
Q ss_pred HHH
Q 001755 332 EQA 334 (1017)
Q Consensus 332 e~a 334 (1017)
.++
T Consensus 426 ~~~ 428 (443)
T PF04053_consen 426 IET 428 (443)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 463
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=81.71 E-value=5.6 Score=34.78 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=38.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 943 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~ 943 (1017)
.-.||+ .|......||.++|+.||.|. |...+. .-|||...+.+.+..++..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~---VsWi~d------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY---VSWIND------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE---EEEECT------TEEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE---EEEEcC------CcEEEEeecHHHHHHHHHH
Confidence 344555 999999999999999999986 444443 3799999999999988876
No 464
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=81.27 E-value=0.41 Score=58.30 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=55.5
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCccc
Q 001755 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 949 (1017)
Q Consensus 877 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~ 949 (1017)
+...+++||+|||+..+++.+|+..|..+|.|..|+|..... +..--|+||.|.+...+-.|... .+..|+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~--~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI--KTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC--CcccchhhhhhhccccCcccchhhcCCccc
Confidence 344678999999999999999999999999999987654333 33456999999998888777655 344443
No 465
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.26 E-value=1.1e+02 Score=35.33 Aligned_cols=131 Identities=15% Similarity=0.048 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHHhhcC--CChHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPE--YWIRYVLCMEA--SGSMDLAHNALARATHVFVK--RLPEIHLFA 279 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~--lW~~ya~~l~~--~g~~e~A~~v~~rAl~~~~p--~~~~i~l~~ 279 (1017)
.|.....+. +.+++..|..+|+.++...+.... .+..++..+.. .-++++|.+.|++.+....+ ...+.+...
T Consensus 134 ~~~~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 134 EWRRAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 455555443 678999999999999987454444 44444444443 56788999999988764322 112223333
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhc
Q 001755 280 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL--GNLEDAFSLYEQAIAIEK 339 (1017)
Q Consensus 280 a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~--g~~e~A~~iye~al~~~~ 339 (1017)
.........+........... ..+...-+.--+.+.++|. |+++.|...+=|+++...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 213 VEVLKALESILSALEDKKQRQ--KKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA 272 (379)
T ss_pred HHHHHHHHhhccchhhhhccc--cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 333222222222211111100 0112233444556667654 999999999999988764
No 466
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=80.67 E-value=8.1 Score=49.35 Aligned_cols=118 Identities=20% Similarity=0.319 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHc----CC-hHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hcCC
Q 001755 204 LENWHNYLDFIERD----GD-FNKVVKLYERCLIACA------NYPEYWIRYVLCMEASGSMDLAHNALARATHV-FVKR 271 (1017)
Q Consensus 204 l~~W~~yl~~e~~~----g~-~~~a~~lyeraL~~~p------~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~-~~p~ 271 (1017)
+..|..|+.|.... +. ....+.+.+||+.... +++.+.+.|.. ++....+.+++.+|..+... +...
T Consensus 34 l~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg~~ 112 (974)
T KOG1166|consen 34 LDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGIGTT 112 (974)
T ss_pred hhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccccch
Confidence 56899999998542 33 5567888899987764 33342222222 23345677888888776652 2245
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHcCC
Q 001755 272 LPEIHLFAARFKEQNGDIDGARAAYQLVHTET-SPGLLEAIIKHANMERRLGN 323 (1017)
Q Consensus 272 ~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l-~P~~~~~~~~~a~~e~r~g~ 323 (1017)
...+|..|+.++++.+.+.+|.++|+..+... .| ...+..++..|..|.+.
T Consensus 113 lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP-~~rL~~~~~~F~~r~~r 164 (974)
T KOG1166|consen 113 LALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEP-LERLLRQYSNFQQRLMR 164 (974)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhh
Confidence 77888899999999999999999999875432 23 24455555566655544
No 467
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.11 E-value=21 Score=37.01 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHH
Q 001755 288 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 367 (1017)
Q Consensus 288 ~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~ 367 (1017)
+-+.|+..|..+-..-.=+.+++.+.+|.++.+ -+.++++.+|-++++...... ...+.++..+|.+.++ +|+++.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~-~~~~e~ 196 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQK-LKNYEQ 196 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH-hcchhh
Confidence 335677777775322122457888888988874 577999999999999887652 2237888889988777 888887
Q ss_pred HH
Q 001755 368 AR 369 (1017)
Q Consensus 368 Ar 369 (1017)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 468
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.60 E-value=3.6 Score=27.23 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 310 AIIKHANMERRLGNLEDAFSLYEQAIAIE 338 (1017)
Q Consensus 310 ~~~~~a~~e~r~g~~e~A~~iye~al~~~ 338 (1017)
+|..++.++...++++.|...|+++++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 44555555555566666666665555543
No 469
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.26 E-value=39 Score=35.08 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=65.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC
Q 001755 227 YERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG 306 (1017)
Q Consensus 227 yeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~ 306 (1017)
.+|......++.+..+.|- +.....-+.|+..|-++-..-.=+.+++.+.+|.++. .-+.++|+.+|.+++....++
T Consensus 97 l~~L~~~tk~S~dP~llYy--~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~ 173 (203)
T PF11207_consen 97 LERLQEETKNSQDPYLLYY--HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD 173 (203)
T ss_pred HHHHHHHHccCCCccHHHH--HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC
Confidence 3344433333333333332 3333345667777765543221258999999999997 468899999999987654444
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHH
Q 001755 307 ---LLEAIIKHANMERRLGNLEDA 327 (1017)
Q Consensus 307 ---~~~~~~~~a~~e~r~g~~e~A 327 (1017)
+++++..++.+..++++++.|
T Consensus 174 ~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 174 DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCHHHHHHHHHHHHHhcchhhh
Confidence 588999999999999998876
No 470
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.23 E-value=43 Score=35.96 Aligned_cols=54 Identities=30% Similarity=0.325 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhcCCC--ccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 001755 324 LEDAFSLYEQAIAIEKGKE--HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 377 (1017)
Q Consensus 324 ~e~A~~iye~al~~~~~~~--~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~ 377 (1017)
.++|...|+.|+......- .....-.+.++|+-|++...|+.++|+++-+.+++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4788999999988765421 12234456688999999989999999998888764
No 471
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.58 E-value=24 Score=35.23 Aligned_cols=66 Identities=27% Similarity=0.345 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcH
Q 001755 241 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 308 (1017)
Q Consensus 241 W~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~ 308 (1017)
.+..+..-...++.+.+..++. |+.+.-|+.+++.+.-+.+....|++.+|+.+|+.+. +-.|...
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~-ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~-~~~~~~p 78 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLD-ALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE-ERAPGFP 78 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHH-HHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh-ccCCCCh
Confidence 3455555556789999999885 6666779999999999999999999999999999975 3355544
No 472
>PRK12798 chemotaxis protein; Reviewed
Probab=77.43 E-value=1.5e+02 Score=34.41 Aligned_cols=194 Identities=14% Similarity=0.091 Sum_probs=103.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHH--HHHHHHcC
Q 001755 210 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA--ARFKEQNG 287 (1017)
Q Consensus 210 yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~--a~~ee~~g 287 (1017)
-+-|...-|+..-+..+..+-..- +.+.=+..+..-.-.|+.+++++.|....-..+|..--.++.+ +.+. ...
T Consensus 87 a~iy~lSGGnP~vlr~L~~~d~~~---~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~-~~~ 162 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLLARDKLG---NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLM-VAT 162 (421)
T ss_pred HHhhHhcCCCHHHHHHHHHcCCCC---hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHh-ccc
Confidence 355666777776655555443211 2223233333333357788887777554332223322233333 3333 335
Q ss_pred CHHHHHHHHHHHhhhcCCCcH--HH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCC
Q 001755 288 DIDGARAAYQLVHTETSPGLL--EA-IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 364 (1017)
Q Consensus 288 ~~~~Ar~iy~~~~~~l~P~~~--~~-~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~ 364 (1017)
+..+|.+.|+.+-. +.|+-+ ++ +.+-+-+....|+.++...+-.+.+..+.. |....+++..++..+.+...+
T Consensus 163 dP~~Al~~lD~aRL-laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~---S~YA~~F~~~F~~~~~~~~d~ 238 (421)
T PRK12798 163 DPATALKLLDQARL-LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRH---SPYASQFAQRFVDLVVRLDDE 238 (421)
T ss_pred CHHHHHHHHHHHHH-hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcccc
Confidence 77788888887643 466632 22 333333445667888877777777766654 333345555555554442333
Q ss_pred HHHHHHHHHHHhhh-cCCCH-HHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcC
Q 001755 365 AEKARQILVDSLDH-VQLSK-PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN 416 (1017)
Q Consensus 365 ~e~Ar~i~~~al~~-~P~~~-~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~ 416 (1017)
... ..+...|.. +|... .+|+..+.--...|+. +.++-.-++++...
T Consensus 239 ~~~--~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~---~lA~~As~~A~~L~ 287 (421)
T PRK12798 239 IRD--ARLVEILSFMDPERQRELYLRIARAALIDGKT---ELARFASERALKLA 287 (421)
T ss_pred ccH--HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHhc
Confidence 322 235556654 44433 3777777766666655 55666667776654
No 473
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.17 E-value=10 Score=34.29 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=43.6
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCccC---cHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCC
Q 001755 319 RRLGNLEDAFSLYEQAIAIEKGKEHSQ---TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 381 (1017)
Q Consensus 319 ~r~g~~e~A~~iye~al~~~~~~~~~~---~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~ 381 (1017)
.+.|++..|.+.+.+.++......... .....++.+|.+... .|+.++|...++++++.-..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHH
Confidence 457888888888888887766543322 223344566776555 89999999999999985543
No 474
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=76.99 E-value=92 Score=34.49 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 001755 242 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 321 (1017)
Q Consensus 242 ~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~ 321 (1017)
+...+-..+..+...-...-..|++++ |.|...++.+| ++...-+.+|.++|.+++.. .+..++..+.....
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN-~eCA~AyvLLA--EEEa~Ti~~AE~l~k~ALka-----~e~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEIN-NECATAYVLLA--EEEATTIVDAERLFKQALKA-----GETIYRQSQQCQHQ 259 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcC-chhhhHHHhhh--hhhhhhHHHHHHHHHHHHHH-----HHHHHhhHHHHhhh
Q ss_pred CCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCHH--HHHHHHHHHhhCCCh
Q 001755 322 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP--LLEALIHFESIQSSP 399 (1017)
Q Consensus 322 g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~--lw~~~a~~E~~~~~~ 399 (1017)
|..-+|.. ..+...+..+-..+|..-.+ +|+..+|.++++.+.+..|-..- ++.++++-.....-.
T Consensus 260 ~~~~da~~-----------rRDtnvl~YIKRRLAMCARk-lGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 260 SPQHEAQL-----------RRDTNVLVYIKRRLAMCARK-LGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred ccchhhhh-----------hcccchhhHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHH
Q 001755 400 KQIDFLEQLVD 410 (1017)
Q Consensus 400 ~~~~~ar~l~e 410 (1017)
.+...+..-|+
T Consensus 328 ADvqavLakYD 338 (556)
T KOG3807|consen 328 ADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHhhc
No 475
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.61 E-value=22 Score=45.56 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001755 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 266 (1017)
Q Consensus 206 ~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~ 266 (1017)
.|..-.++.++++.+.++..+|.--.+. +..++..||..+.....+++|.-.|+++..
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk 967 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYERCGK 967 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHHhcc
Confidence 5666667777777666665555333222 345777888888887777777777766544
No 476
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.42 E-value=1.2e+02 Score=37.10 Aligned_cols=147 Identities=19% Similarity=0.126 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh----hcCCChHHHHHHHHHHHHcC---
Q 001755 220 FNKVVKLYERCLIACANYPEYWIRYVLCMEA-----SGSMDLAHNALARATHV----FVKRLPEIHLFAARFKEQNG--- 287 (1017)
Q Consensus 220 ~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~-----~g~~e~A~~v~~rAl~~----~~p~~~~i~l~~a~~ee~~g--- 287 (1017)
...+.+.|+.+-... +...-..++.++.. ..+++.|...|+++.+. .....+.....++.++.+..
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 345666666655443 23333344444332 34789999999988762 11123344555677776642
Q ss_pred --CHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHH--
Q 001755 288 --DIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL-- 360 (1017)
Q Consensus 288 --~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~---g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~-- 360 (1017)
+.+.|..+|.++... +++...+.++.++..- .++.+|-.+|..|....-. .....++.++..
T Consensus 306 ~~d~~~A~~~~~~aA~~---g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~--------~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL---GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI--------LAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHHHhc---CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHhCC
Confidence 677899999987532 3455666666665543 3567899999888766432 233444555332
Q ss_pred -hhCCHHHHHHHHHHHhhhc
Q 001755 361 -VSRNAEKARQILVDSLDHV 379 (1017)
Q Consensus 361 -~~g~~e~Ar~i~~~al~~~ 379 (1017)
...+.++|..+|.++.++.
T Consensus 375 gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc
Confidence 2458899999999998877
No 477
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=76.40 E-value=37 Score=40.68 Aligned_cols=148 Identities=11% Similarity=0.057 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHH---------HhhhcCCCcHHHH
Q 001755 242 IRYVLCMEASGSMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQL---------VHTETSPGLLEAI 311 (1017)
Q Consensus 242 ~~ya~~l~~~g~~e~A~~v~~rAl~~~-~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~---------~~~~l~P~~~~~~ 311 (1017)
+.|++=+...|+-++-..+.++-.+-. .-+.|. ..|.++...|+.++|..+.-. +...++-...+..
T Consensus 674 FD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l 750 (1081)
T KOG1538|consen 674 FDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPL 750 (1081)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHH
Confidence 344554455555554444443322211 011222 246667777777777665331 0111222233444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhcCCCH-HHHHHHH
Q 001755 312 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK-PLLEALI 390 (1017)
Q Consensus 312 ~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~-~lw~~~a 390 (1017)
...+..+.++..+--|-++|.+.=+.. ....+ ....++..+|..+-++. |.-. ++|+.|+
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD~k--------------siVql-Hve~~~W~eAFalAe~h----Pe~~~dVy~pya 811 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGDLK--------------SLVQL-HVETQRWDEAFALAEKH----PEFKDDVYMPYA 811 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhccHH--------------HHhhh-eeecccchHhHhhhhhC----ccccccccchHH
Confidence 444444444444444444444321110 00011 11256666666655443 3332 3667777
Q ss_pred HHHhhCCChhHHHHHHHHHHHHhh
Q 001755 391 HFESIQSSPKQIDFLEQLVDKFLM 414 (1017)
Q Consensus 391 ~~E~~~~~~~~~~~ar~l~e~al~ 414 (1017)
.+.... ++.+++.+.|-+|=.
T Consensus 812 qwLAE~---DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 812 QWLAEN---DRFEEAQKAFHKAGR 832 (1081)
T ss_pred HHhhhh---hhHHHHHHHHHHhcc
Confidence 765543 344666666666543
No 478
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.33 E-value=8.2 Score=41.05 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=36.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCH
Q 001755 879 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI 934 (1017)
Q Consensus 879 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~ 934 (1017)
.-..-||++||+.++...||+..+.+-|.+- ..|. ..| .+|-||+.|-+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~is----wkg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSIS----WKG-HFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCc-eeEe----eec-CCcceeEecCCc
Confidence 3446799999999999999999998877542 1121 222 467899999865
No 479
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=76.18 E-value=38 Score=38.55 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHhhcCC------ChHHHHHHHH
Q 001755 221 NKVVKLYERCLIACANYPEYWIRYVLCM-------------EASGSMDLAHNALARATHVFVKR------LPEIHLFAAR 281 (1017)
Q Consensus 221 ~~a~~lyeraL~~~p~~~~lW~~ya~~l-------------~~~g~~e~A~~v~~rAl~~~~p~------~~~i~l~~a~ 281 (1017)
+++...+++|+...-.+.++--.+++-+ .-.|+++.|...-+.-|.+. .. .-..|.+++.
T Consensus 165 ~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia-~efGDrAaeRRA~sNlgN 243 (639)
T KOG1130|consen 165 AEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA-QEFGDRAAERRAHSNLGN 243 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcccch
Confidence 4455666666655544444444443322 22366777766554444432 11 2345667778
Q ss_pred HHHHcCCHHHHHHHHHHHhh---hcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001755 282 FKEQNGDIDGARAAYQLVHT---ETSPGLL--EAIIKHANMERRLGNLEDAFSLYEQAIAIEK 339 (1017)
Q Consensus 282 ~ee~~g~~~~Ar~iy~~~~~---~l~P~~~--~~~~~~a~~e~r~g~~e~A~~iye~al~~~~ 339 (1017)
.+.-.|+++.|.+.|.+.+. ++.-.-. ...+.+++.+.-+.++++|+..+.+-+.+..
T Consensus 244 ~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 244 CHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999997642 1222222 2345566666666677777777666555543
No 480
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=75.58 E-value=1 Score=49.30 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=55.8
Q ss_pred ccEEEEecCCCCCCHHHH---HHHHhcCCCeeEeeEEeecC--CCcc-cccEEEEEECCHHHHHHHHHh-CCCcccCeEE
Q 001755 881 VKSVYVRNLPSTVTAFEI---EEEFQNFGRIKPDGVFVRNR--KDVV-GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 953 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L---~~~F~~~G~i~~v~i~~~~~--~~g~-~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l 953 (1017)
..-+||-+|+.....+.+ .+.|.+||.|..|.+ .++. ..+. +..-++|+|...+++..||.. .|+.++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~-~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVK-NKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEee-cCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 356788888877655544 367889999988643 2222 1111 123489999999999999998 8999999987
Q ss_pred EEEeccC
Q 001755 954 YIEERRP 960 (1017)
Q Consensus 954 ~Ve~~r~ 960 (1017)
+..+..+
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7765543
No 481
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=75.53 E-value=5.5 Score=29.94 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 001755 226 LYERCLIACANYPEYWIRYVLCMEASGSMDLA 257 (1017)
Q Consensus 226 lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A 257 (1017)
.|.+||...|.+...|+.|+.|+..+|+.+.|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 57889999999999999999999999887654
No 482
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.50 E-value=26 Score=31.39 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 224 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHV 267 (1017)
Q Consensus 224 ~~lyeraL~~~p~~~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~ 267 (1017)
+.-+++.+..+|.+.+..+.++..+...|+++.|.+.|-..+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34567888888888888888888888888888888877777663
No 483
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.91 E-value=65 Score=31.79 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001755 251 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 300 (1017)
Q Consensus 251 ~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~ 300 (1017)
.++++++..++. ++.+.-|+.+++.++-+.+....|++++|..+|+.+.
T Consensus 23 ~~d~~D~e~lLd-ALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLD-ALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHH-HHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 566777777765 4445557777777777777777777777777777754
No 484
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=74.35 E-value=2.2e+02 Score=34.92 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=22.6
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 303 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 333 (1017)
Q Consensus 303 l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~ 333 (1017)
..|++.++.-.++++..+.|--++|.+.|-|
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 3577777777788888888877777776643
No 485
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.89 E-value=6 Score=26.03 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001755 240 YWIRYVLCMEASGSMDLAHNALARATH 266 (1017)
Q Consensus 240 lW~~ya~~l~~~g~~e~A~~v~~rAl~ 266 (1017)
.|..++.++...++++.|...|++++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 355555555555555555555555554
No 486
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.34 E-value=2.4e+02 Score=34.94 Aligned_cols=162 Identities=12% Similarity=0.104 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhhhhHhhhhccCCcccCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 001755 170 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-PEYWIRYVLCM 248 (1017)
Q Consensus 170 ~~y~~~~~~~~~~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~~~~a~~lyeraL~~~p~~-~~lW~~ya~~l 248 (1017)
-.+..+.........+++++..... ..+.+-.+..=.-++.++.+.+... |.....+++..+-.+ ...|....+++
T Consensus 68 iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll 144 (608)
T PF10345_consen 68 ILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLL 144 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 3556777777777788888743222 1112212223333355556656554 999999999887662 23454444433
Q ss_pred -----HHcCCHHHHHHHHHHHHHhhc-CCChHHHHHH----HHHHHHcCCHHHHHHHHHHHhhhc---------CCCcHH
Q 001755 249 -----EASGSMDLAHNALARATHVFV-KRLPEIHLFA----ARFKEQNGDIDGARAAYQLVHTET---------SPGLLE 309 (1017)
Q Consensus 249 -----~~~g~~e~A~~v~~rAl~~~~-p~~~~i~l~~----a~~ee~~g~~~~Ar~iy~~~~~~l---------~P~~~~ 309 (1017)
...++...|...+++...... ..++.+.... +.+....+..+++.+..+++.... .+..+.
T Consensus 145 ~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~ 224 (608)
T PF10345_consen 145 KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLK 224 (608)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHH
Confidence 123689999999999887543 3455555443 444456676777777777652211 223466
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHH
Q 001755 310 AIIKHANMER--RLGNLEDAFSLYEQA 334 (1017)
Q Consensus 310 ~~~~~a~~e~--r~g~~e~A~~iye~a 334 (1017)
+|.....+.. +.|+++.+...++..
T Consensus 225 ~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 225 ALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777666543 457766665554433
No 487
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=73.32 E-value=12 Score=33.76 Aligned_cols=100 Identities=13% Similarity=0.066 Sum_probs=60.9
Q ss_pred chHHHHHHhc-ccChhhhhccccCCceEEEEcCCccccccchHHHHHHhhc--CCCcceeEEeeeccccCCCceEEEEEE
Q 001755 574 YFVGQYYQVL-QQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVIS--LNFTAIEIKTINSLGSWNGGVLVMVSG 650 (1017)
Q Consensus 574 ~Fv~~YY~~l-~~~p~~l~~fY~~~ss~~~~~g~~~~~~~~~~~I~~~i~~--l~~~~~~i~~~d~q~s~~~~ilv~V~G 650 (1017)
..+++|...+ +.+++.+..+|.++.++++.+|... +..++.+.+.. +.....++..+..+.. ++..++....
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~----~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~~ 77 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTIL----GKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGRW 77 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEE----EHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEe----CHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEEE
Confidence 3567788766 5569999999999988886554443 33444455554 2233445555666666 4455555555
Q ss_pred EEEecCCc--cccceeEEEEEEEeCCeEEE
Q 001755 651 SVKTKEFC--RRRKFVQTFFLAPQEKGYFV 678 (1017)
Q Consensus 651 ~~~~~~~~--~~~~F~q~F~L~~~~~~y~V 678 (1017)
.++..... ....+..+.++..++++|-|
T Consensus 78 ~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 78 TFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 56554321 12456666677777888865
No 488
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.24 E-value=2.8e+02 Score=35.77 Aligned_cols=83 Identities=13% Similarity=0.017 Sum_probs=43.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH
Q 001755 354 YSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSC 433 (1017)
Q Consensus 354 ~a~~l~~~~g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~ 433 (1017)
-+.++|...|++++...+|-+++... .+...|..+++-.+.. -+.+.....+. -.......+..
T Consensus 606 ~a~lcYi~agsv~k~v~~w~~~~~~~-~~~~~y~~~~e~l~~~-------------~~~l~~~~~~~--~~s~~l~~~~~ 669 (1049)
T KOG0307|consen 606 AAILCYICAGSVDKLVEIWLKALDLE-LAPTSYQDLAEDLMEL-------------TLKLAQFSANK--TYSAGLAKKFS 669 (1049)
T ss_pred hhhHHhhhccChhhhHHHHHHhcccc-cchHHHHHHHHHHHHH-------------HhhhhhcccCc--cccHHHHHHHH
Confidence 34455666888888888888887765 3334444444322211 11112222221 12233445556
Q ss_pred HHHHHHHhhCCHHHHHHHH
Q 001755 434 VFLEFLGLFGDAQLIKKAE 452 (1017)
Q Consensus 434 ~~l~fe~~~Gd~~~~~~~~ 452 (1017)
.|++.+-..|....+...+
T Consensus 670 ~yanllasQG~~~~A~~~l 688 (1049)
T KOG0307|consen 670 EYANLLASQGALAAAMSFL 688 (1049)
T ss_pred HHHHHHHhcChHHHHHhhc
Confidence 6666677777776666554
No 489
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.13 E-value=35 Score=30.58 Aligned_cols=65 Identities=12% Similarity=-0.059 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001755 259 NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 338 (1017)
Q Consensus 259 ~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~ 338 (1017)
..+++++... |.+....+.+|..+...|++++|.+.|..++. .++++ +-+.|++.+-.+++..
T Consensus 9 ~al~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~-~dr~~---------------~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 9 AALEAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVR-RDRDY---------------EDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C-TTC---------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCccc---------------cccHHHHHHHHHHHHc
Confidence 4566777744 88888899999988889999999888888764 35543 2245555555555555
Q ss_pred cC
Q 001755 339 KG 340 (1017)
Q Consensus 339 ~~ 340 (1017)
+.
T Consensus 72 g~ 73 (90)
T PF14561_consen 72 GP 73 (90)
T ss_dssp -T
T ss_pred CC
Confidence 54
No 490
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=72.95 E-value=13 Score=31.15 Aligned_cols=56 Identities=13% Similarity=0.319 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 891 STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 891 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
..++-++++..+.+|+-.. | +..+| || ||.|.+..+|+++... ++..+.+-.+.++
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~---I--~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR---I--RDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CCccHHHHHHHHhcCCcce---E--EecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 4578899999999998764 3 34444 34 8999999999999988 7888877776653
No 491
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.70 E-value=15 Score=39.83 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=51.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeE-EEEEe
Q 001755 881 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQ-VYIEE 957 (1017)
Q Consensus 881 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~-l~Ve~ 957 (1017)
...|-|-++|+. ...-|..+|++||.|.+. +. +..-.+-.|-|.+.-++++||..||..|+|-. |-|..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkh---v~----~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKH---VT----PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeee---ec----CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 356667788765 345677999999999763 21 12335899999999999999999999999865 44443
No 492
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=72.44 E-value=1.2e+02 Score=35.20 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCC
Q 001755 214 IERDGDFNKVVKLYERCLIACANY-----PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 288 (1017)
Q Consensus 214 e~~~g~~~~a~~lyeraL~~~p~~-----~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~ 288 (1017)
+.+++++..+.++|.|........ .++....+.--.-.++++.-...+...-+.+ ++++.+.++-+....+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~-~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQF-GKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCCc---cCcHHHH
Q 001755 289 IDGARAAYQLVHTETSPGLLEAIIK---------------HANMERRLGNLEDAFSLYEQAIAIEKGKEH---SQTLPML 350 (1017)
Q Consensus 289 ~~~Ar~iy~~~~~~l~P~~~~~~~~---------------~a~~e~r~g~~e~A~~iye~al~~~~~~~~---~~~~~~l 350 (1017)
+.+|.+.+..+-.. ..+....|+. .|..+...|.+.++|.++++.+...-..+. ......+
T Consensus 95 ~~kal~~ls~w~~~-~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 95 YRKALQALSVWKEQ-IKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred HHHHHHHHHHHHhh-hcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Q ss_pred HHHHHH---HHHHhhCCHHHHHHHHHHHh
Q 001755 351 YAQYSR---FLHLVSRNAEKARQILVDSL 376 (1017)
Q Consensus 351 ~~~~a~---~l~~~~g~~e~Ar~i~~~al 376 (1017)
.+-+++ ++.+.....+-+-..|+-++
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemil 202 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMIL 202 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHH
No 493
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.33 E-value=1.6e+02 Score=32.39 Aligned_cols=185 Identities=15% Similarity=0.029 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH----cCCH
Q 001755 218 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEA----SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDI 289 (1017)
Q Consensus 218 g~~~~a~~lyeraL~~~p~~~~lW~~ya~~l~~----~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~----~g~~ 289 (1017)
+++..+...|+++-. -.....-..++.++.. ..+...|...|+.+.+ ...+.....++.++.. ..++
T Consensus 55 ~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~---~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 55 PDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA---DGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh---cccHHHHHhHHHHHhcCCCcccCH
Q ss_pred HHHHHHHHHHhhhcCCCcHHH---HHHHHHHHHHc-----CCHH--HHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHH
Q 001755 290 DGARAAYQLVHTETSPGLLEA---IIKHANMERRL-----GNLE--DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 359 (1017)
Q Consensus 290 ~~Ar~iy~~~~~~l~P~~~~~---~~~~a~~e~r~-----g~~e--~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~ 359 (1017)
.+|...|+++. .-++... .+.++.++..- -..+ .|+..|.++....... ....++.++.
T Consensus 130 ~~A~~~~~~Aa---~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~--------a~~~lg~~y~ 198 (292)
T COG0790 130 VKALKYYEKAA---KLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPD--------AQLLLGRMYE 198 (292)
T ss_pred HHHHHHHHHHH---HcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHH--------HHHHHHHHHH
Q ss_pred HhhC---CHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhCCChh----------HHHHHHHHHHHHhhcCCCC
Q 001755 360 LVSR---NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK----------QIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 360 ~~~g---~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~~~~~----------~~~~ar~l~e~al~~~~~~ 419 (1017)
.-.| |+++|...|.++.+.......++.. +.+....+... +...+...+.++.......
T Consensus 199 ~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 199 KGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 494
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.18 E-value=2.8e+02 Score=35.18 Aligned_cols=234 Identities=13% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001755 225 KLYERCLIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 298 (1017)
Q Consensus 225 ~lyeraL~~~p~~------~~lW~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~g~~~~Ar~iy~~ 298 (1017)
.+|...|...+.. .++..+-+.|...+|..++|....-+|-+.- .-.++....+.-+...+++.-.+.+.+.
T Consensus 328 ~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~--~aa~lle~~~~~L~~~~~lsll~~~~~~ 405 (894)
T COG2909 328 HLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPE--MAADLLEQLEWQLFNGSELSLLLAWLKA 405 (894)
T ss_pred HHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHH--HHHHHHHhhhhhhhcccchHHHHHHHHh
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCccCcHHHHH--HHHHHHHHHhhCCHHHHHHHHHHHh
Q 001755 299 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSL 376 (1017)
Q Consensus 299 ~~~~l~P~~~~~~~~~a~~e~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~--~~~a~~l~~~~g~~e~Ar~i~~~al 376 (1017)
+-..+.-.++.+.+.++......+.+++|..+..++....+...++..-..+. ..+........|++++|.++-+.++
T Consensus 406 lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al 485 (894)
T COG2909 406 LPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL 485 (894)
T ss_pred CCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q ss_pred hhcCCCHH-----HHHHHHHHHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH-----HHhhC--C
Q 001755 377 DHVQLSKP-----LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF-----LGLFG--D 444 (1017)
Q Consensus 377 ~~~P~~~~-----lw~~~a~~E~~~~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~f-----e~~~G--d 444 (1017)
...|.+.. +.......-...|+. .+++.+...+.+........ ....|... +...| .
T Consensus 486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~---~~Al~~~~~a~~~a~~~~~~--------~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 486 VQLPEAAYRSRIVALSVLGEAAHIRGEL---TQALALMQQAEQMARQHDVY--------HLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred HhcccccchhhhhhhhhhhHHHHHhchH---HHHHHHHHHHHHHHHHcccH--------HHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhc
Q 001755 445 AQLIKKAEDRHARLFLPHRSTSELRKR 471 (1017)
Q Consensus 445 ~~~~~~~~~r~~~~~~~~~~~~~~kkr 471 (1017)
.....+.+.+....+...+...+-+.|
T Consensus 555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHH
No 495
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=72.12 E-value=2.5 Score=48.18 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred CHHHHHHHHhcCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCcccCeEEEEEeccCCC
Q 001755 894 TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNT 962 (1017)
Q Consensus 894 t~~~L~~~F~~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~~~~~i~g~~l~Ve~~r~~~ 962 (1017)
+.++|..+|.+||+|.. |.++.... .|.|+|.+..++-.|....+..|++|.|+|-+-.+..
T Consensus 386 t~a~ln~hfA~fG~i~n--~qv~~~~~-----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIEN--IQVDYSSL-----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCcccc--ccccCchh-----hheeeeeccccccchhccccceecCceeEEEEecCCc
No 496
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=71.38 E-value=12 Score=32.16 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=0.0
Q ss_pred cEEEEe-cCCCCCCHHHHHHHHhcCCCeeEe---eEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCcccCeEEEEE
Q 001755 882 KSVYVR-NLPSTVTAFEIEEEFQNFGRIKPD---GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 956 (1017)
Q Consensus 882 ~~l~V~-nl~~~~t~~~L~~~F~~~G~i~~v---~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~-~~~~i~g~~l~Ve 956 (1017)
.++||. +--..++..+|..++...+.|..- +|.+.+. |.||+- ..+.+..++.. ++..+.|++|+|+
T Consensus 1 vrl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev-~~~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 1 VRLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEV-PEEVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp -EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE--TT-HHHHHHHHTT--SSS----EE
T ss_pred CEEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEE-CHHHHHHHHHHhcCCCCCCeeEEEE
Q ss_pred ec
Q 001755 957 ER 958 (1017)
Q Consensus 957 ~~ 958 (1017)
.+
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
No 497
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=70.62 E-value=6 Score=46.00 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHh--cCCCeeEeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCcccCeEEEEE
Q 001755 882 KSVYVRNLPSTVTAFEIEEEFQ--NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIE 956 (1017)
Q Consensus 882 ~~l~V~nl~~~~t~~~L~~~F~--~~G~i~~v~i~~~~~~~g~~kg~aFVeF~~~~~a~~Al~~---~~~~i~g~~l~Ve 956 (1017)
+.|.++-||..+..++++.+|+ .|-++.+|..-.-+.+ ||+|++..+|+.|.+. .-.+|.|+.|...
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW--------yITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW--------YITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce--------EEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Q ss_pred ec
Q 001755 957 ER 958 (1017)
Q Consensus 957 ~~ 958 (1017)
.+
T Consensus 248 IK 249 (684)
T KOG2591|consen 248 IK 249 (684)
T ss_pred hh
No 498
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.58 E-value=1.8e+02 Score=35.63 Aligned_cols=184 Identities=13% Similarity=0.002 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHhh----hcCCCcHHHHHHHHHHHHHcC-
Q 001755 253 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQN-----GDIDGARAAYQLVHT----ETSPGLLEAIIKHANMERRLG- 322 (1017)
Q Consensus 253 ~~e~A~~v~~rAl~~~~p~~~~i~l~~a~~ee~~-----g~~~~Ar~iy~~~~~----~l~P~~~~~~~~~a~~e~r~g- 322 (1017)
+...|...|+.+.. ..+......++.++..- .|++.|..+|..+.. ...-.+..+...++.++.+..
T Consensus 227 ~~~~a~~~~~~~a~---~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 227 ELSEAFKYYREAAK---LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhhHHHHHHHHHHh---hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Q ss_pred ----CHHHHHHHHHHHHHhhcCCCccCcHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhC
Q 001755 323 ----NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS--RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 396 (1017)
Q Consensus 323 ----~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~--g~~e~Ar~i~~~al~~~P~~~~lw~~~a~~E~~~ 396 (1017)
+.+.|..+|.++-+....+ ....++.+...-. .|+.+|.++|..|.+..-...-+|+......- .
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~--------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G-~ 374 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPD--------AQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELG-L 374 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCch--------HHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-C
Q ss_pred CChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 001755 397 SSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 458 (1017)
Q Consensus 397 ~~~~~~~~ar~l~e~al~~~~~~~~~l~~~~~~~l~~~~l~fe~~~Gd~~~~~~~~~r~~~~ 458 (1017)
+-..+.+.+..++.++-... ++.. .+....-++-..++.+.....+.....+
T Consensus 375 gv~r~~~~A~~~~k~aA~~g--~~~A--------~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG--NPSA--------AYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc--Chhh--------HHHHHHHHHHccccccHHHHHHHHHHHh
No 499
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.29 E-value=9.8 Score=27.81 Aligned_cols=30 Identities=37% Similarity=0.467 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001755 308 LEAIIKHANMERRLGNLEDAFSLYEQAIAI 337 (1017)
Q Consensus 308 ~~~~~~~a~~e~r~g~~e~A~~iye~al~~ 337 (1017)
...+..++.++...|++++|+.++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
No 500
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=70.25 E-value=13 Score=38.08 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001755 954 YIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDGGDYNRSRGNGFYQRGSQ 1017 (1017)
Q Consensus 954 ~Ve~~r~~~~~~~rg~~~g~grgg~~~~~~rg~~ggrg~gr~~~~~g~~~~~~~g~g~~~~~~~ 1017 (1017)
.|++-..+......+.+...++-+.+++++++++++++.+.+++.+.+..+.+.+.|+.+|+.+
T Consensus 104 ~V~fL~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (182)
T PRK06958 104 QMQMLGGRGGSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASRPSA 167 (182)
T ss_pred EEEECCCCccCcCcccCcccCCccCCCCCCCCCcCCccccCCccccccCCCCCCCCCcccCcCC
Done!