Query 001755
Match_columns 1017
No_of_seqs 639 out of 3943
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 17:11:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001755.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1051-1055//hhsearch_pdb/001755hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 1.0 1 1 362.1 40.7 362 34-463 163-575 (679)
2 2ooe_A Cleavage stimulation fa 1.0 1 1 289.3 41.7 418 35-490 29-517 (530)
3 2uy1_A Cleavage stimulation fa 1.0 1 1 284.6 34.7 334 27-460 63-415 (493)
4 4e6h_A MRNA 3'-END-processing 1.0 1 1 253.1 39.4 378 34-461 82-536 (679)
5 3q90_A RAS GTPase-activating p 1.0 1 1 228.9 9.8 124 567-691 8-140 (140)
6 3ujm_A Rasputin; NTF2-like fol 1.0 1 1 222.0 8.8 116 567-686 2-120 (120)
7 2ond_A Cleavage stimulation fa 1.0 1 1 221.8 27.2 250 199-463 3-275 (308)
8 2ooe_A Cleavage stimulation fa 1.0 1 1 220.7 38.0 360 24-419 92-496 (530)
9 3nv0_B NTF2-related export pro 1.0 1 1 211.0 10.5 115 568-687 33-154 (154)
10 2uy1_A Cleavage stimulation fa 1.0 1 1 209.0 25.8 353 20-455 2-380 (493)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=362.06 Aligned_cols=362 Identities=14% Similarity=0.194 Sum_probs=295.9
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf 49999999999897299-78892689999999998---------123899999999998512111999999999986149
Q 001755 34 LLICFRLFERGLAYVGT-DYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 103 (1017)
Q Consensus 34 ~~~iR~~fEral~~~G~-d~~s~~lW~~Yi~fE~~---------~~~~~~~~~iy~R~l~~P~~~~~~~~~~f~~~~~~~ 103 (1017)
...+|++||+||..+|. |+.|+.+|++||+||++ ++.+++++.||.|+|.+|+++++.+|..|..|....
T Consensus 163 r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~ 242 (679)
T 4e6h_A 163 RNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV 242 (679)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 89999999999998196655653999999999986354576778768999999999998286377999999999999735
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98434797899999997740687655111125346798653357876347820599999999999999999999997655
Q 001755 104 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 183 (1017)
Q Consensus 104 ~~~~~~~~ee~~~~~~~v~~~~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~~~~k~~ 183 (1017)
.. .+...+.+ +....|.. .......+.
T Consensus 243 --~~-~~a~~~~~------------------------------------------e~~~~y~~--------Ar~~~~e~~ 269 (679)
T 4e6h_A 243 --NQ-LTARRHIG------------------------------------------ELSAQYMN--------ARSLYQDWL 269 (679)
T ss_dssp --CT-TTHHHHHH------------------------------------------HHHHHHHH--------HHHHHHHHH
T ss_pred --CC-CHHHHHHH------------------------------------------HHHHHHHH--------HHHHHHHHH
T ss_conf --83-11889998------------------------------------------73377788--------999999999
Q ss_pred HHHHHHCCCCCCC------------CCCCCCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 6764211687545------------7899100999999999999809-------96799999999998657999999999
Q 001755 184 GFETAIRRPYFHV------------KPLSVTELENWHNYLDFIERDG-------DFNKVVKLYERCLIACANYPEYWIRY 244 (1017)
Q Consensus 184 ~fE~~I~r~y~~~------------~~l~~~~l~~W~~yl~~e~~~g-------~~~~a~~lyeRal~~~p~~~~~W~~y 244 (1017)
.++.+|.+.+.+. ..++..++.+|..|++||+.++ ..+|++.+|++||..||.++++|+.|
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~y 349 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNM 349 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99986751166543200002589986648999999999999998487666410168999999999998769977999999
Q ss_pred HHHHHHCCCHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----------CCC-------
Q ss_conf 99999809979999-999999986117996999999999999099999999999986512----------999-------
Q 001755 245 VLCMEASGSMDLAH-NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET----------SPG------- 306 (1017)
Q Consensus 245 a~~l~~~g~~e~A~-~v~~rAl~~~~p~~~~i~l~~A~~ee~~g~~~~Ar~iy~~~~~~l----------~P~------- 306 (1017)
+.|+...++.+.|+ .+|+||+. ++|++..+|+.|+.+++..|++++||++|++++..+ .|.
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99998628678999999999998-68987799999999999848899999999999988787766664116741245554
Q ss_pred ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf ----0999999999999909988999999999985118775572899999999999996089999999999985406999
Q 001755 307 ----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 382 (1017)
Q Consensus 307 ----~~~~~~~~a~le~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~~~Ar~i~~~al~~~p~~ 382 (1017)
...+|+.++++++|.++++.||.+|++|++..+... +.+|+.++.++++..++.+.||++|+++|+.+|.+
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 1133699999999999870888999999999997368988-----69999999999996898899999999999878995
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999627994688999999999851189999999999899999999999996199999999999999751999
Q 001755 383 KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 462 (1017)
Q Consensus 383 ~~l~~~~a~lE~~~~~~~~~~~a~~l~e~al~~~~~~~~~~~~~~r~~l~~~~l~f~~~~Gd~~~~~~~~~r~~~~~~~~ 462 (1017)
..+|+.|++||...+.. +++|++|++++...++ .+....||..|++||..+|+.+.+.++++|+.+.+|+.
T Consensus 504 ~~~w~~y~~fe~~~~~~---~~AR~lferal~~~~~------~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEE---SQVKSLFESSIDKISD------SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCH---HHHHHHHHHHTTTSSS------TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 39999999999808977---8999999999871688------78999999999999998699999999999999868997
Q ss_pred C
Q ss_conf 8
Q 001755 463 R 463 (1017)
Q Consensus 463 ~ 463 (1017)
.
T Consensus 575 ~ 575 (679)
T 4e6h_A 575 N 575 (679)
T ss_dssp C
T ss_pred C
T ss_conf 3
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=289.32 Aligned_cols=418 Identities=19% Similarity=0.240 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 9999999999897299788926899999999981238999999999985-121119999999999861499843479789
Q 001755 35 LICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE-NPIQQLDRYFSSFKEFAASRPLSELRTAEE 113 (1017)
Q Consensus 35 ~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy~R~l~-~P~~~~~~~~~~f~~~~~~~~~~~~~~~ee 113 (1017)
..+|.+|++++...|. +..+|..|+++|.++++++.++.+|.|++. +|..++|..|..|...... .... ..+
T Consensus 29 ~~a~~~~e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~-~~~~---a~~ 101 (530)
T 2ooe_A 29 DKARKTYERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKG-KLPS---YKE 101 (530)
T ss_dssp HHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT-TSTT---HHH
T ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CHHH---HHH
T ss_conf 9999999999987899---79999999999986698899999999987228984899999999999746-5046---899
Q ss_pred HHHHHHHHHHCCCCCCCC--------------CCCC--------CCCC------CCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999999774068765511--------------1125--------3467------98653357876347820599999999
Q 001755 114 VDAAAVAVAAAPSETGAE--------------VKAN--------EEEV------QPDATEQTSKPVSAGLTEAEELEKYI 165 (1017)
Q Consensus 114 ~~~~~~~v~~~~~e~~~~--------------~~~~--------~g~~------~~~~~~~~~~~~~~~~~~~~~l~~~i 165 (1017)
. ...+|..+++..+. .... .|+. .-..++ .| .. .....+..|.
T Consensus 102 ~---~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~---~P-~~--~~~~~~~~~~ 172 (530)
T 2ooe_A 102 K---MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV---NP-MI--NIEQLWRDYN 172 (530)
T ss_dssp H---HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT---SC-CT--THHHHHHHHH
T ss_pred H---HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH---CH-HH--HHHHHHHHHH
T ss_conf 9---99999999997788866079999999999607776537877379999999999996---66-63--5999999999
Q ss_pred H---------------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCHHHHHHHHHHHHHHCC----CH--
Q ss_conf 9---------------999999999999976556764211687545789----9100999999999999809----96--
Q 001755 166 A---------------VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL----SVTELENWHNYLDFIERDG----DF-- 220 (1017)
Q Consensus 166 ~---------------~~~~~y~~~~~~~~k~~~fE~~I~r~y~~~~~l----~~~~l~~W~~yl~~e~~~g----~~-- 220 (1017)
. .+...|.........+..+++.+.+....+.+. +..++.+|..|++|+..+. +.
T Consensus 173 ~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~ 252 (530)
T 2ooe_A 173 KYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 252 (530)
T ss_dssp HHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 99972166679999998528888799999999999997420345589999865799999999999998709755775126
Q ss_pred --HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf --799999999998657999999999999998-------09979-------99999999998611799699999999999
Q 001755 221 --NKVVKLYERCLIACANYPEYWIRYVLCMEA-------SGSMD-------LAHNALARATHVFVKRLPEIHLFAARFKE 284 (1017)
Q Consensus 221 --~~a~~lyeRal~~~p~~~~~W~~ya~~l~~-------~g~~e-------~A~~v~~rAl~~~~p~~~~i~l~~A~~ee 284 (1017)
.+++.+|++||..+|.++++|+.|+.++.. .|+++ +|+.+|+||+....|++..+|+.++.+++
T Consensus 253 ~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 253 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 88999999999998578977999999999998354655326512212114999999999999868665799999999998
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 909999999999998651299909-9999999999990998899999999998511877557289999999999999608
Q 001755 285 QNGDIDGARAAYQLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 363 (1017)
Q Consensus 285 ~~g~~~~Ar~iy~~~~~~l~P~~~-~~~~~~a~le~r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g 363 (1017)
..|++++|+.+|++++ .+.|... .+|+.++.++.+.|++++|+.+|++++...+.. ..++...+.+++...|
T Consensus 333 ~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSK 405 (530)
T ss_dssp HTTCHHHHHHHHHHHH-HSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC------THHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHHCC
T ss_conf 6388999999999985-76456830999999999998068899999999997355775------0899999999998807
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999854069999999999999962799468899999999985118999999999989999999999999619
Q 001755 364 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 443 (1017)
Q Consensus 364 ~~~~Ar~i~~~al~~~p~~~~l~~~~a~lE~~~~~~~~~~~a~~l~e~al~~~~~~~~~~~~~~r~~l~~~~l~f~~~~G 443 (1017)
++++|+.+|+++++.+|.+..+|..++.++...++. ++++.+|++++...+.+ ++....+|..|+.|+..+|
T Consensus 406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~---~~Ar~~~~~al~~~~~~-----~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED---NNTRVLFERVLTSGSLP-----PEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH---HHHHHHHHHHHHSCCSC-----GGGCHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHCC
T ss_conf 835999999999987899789999999999867988---66999999998415798-----7889999999999999829
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHCCCHHHHHHCCCCC
Q ss_conf 99999999999997519998842432000222013538874004899
Q 001755 444 DAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSG 490 (1017)
Q Consensus 444 d~~~~~~~~~r~~~~~~~~~~~~~~kkr~~~~~~~~~~~k~~~~~~~ 490 (1017)
+.+++.++++++.+.+|+ +.+.+. .....++-|....++.
T Consensus 478 ~~~~~~~~~~r~~~~~p~-----~~~~~~--~~~~~~r~~~~~~~~~ 517 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFRE-----EYEGKE--TALLVDRYKFMDLYPC 517 (530)
T ss_dssp CHHHHHHHHHHHHHHTHH-----HHTTCH--HHHHGGGTCBTTBCSS
T ss_pred CHHHHHHHHHHHHHHCCH-----HCCCCH--HHHHHHHHHHCCCCCC
T ss_conf 999999999999987731-----115854--8999999874266789
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=284.60 Aligned_cols=334 Identities=16% Similarity=0.173 Sum_probs=258.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
Q ss_conf 9874032499999999998972997889268999999999----812389999999999851211199999999998614
Q 001755 27 CPNNFFFLLICFRLFERGLAYVGTDYLSFPLWDKYIEYEY----MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS 102 (1017)
Q Consensus 27 ~~~~~~~~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~----~~~~~~~~~~iy~R~l~~P~~~~~~~~~~f~~~~~~ 102 (1017)
.++. +|.+||+|+..+|.|+.|+.+|.+||+|++ +++++++++.||.|+|.+|+.+++.+|..|..|...
T Consensus 63 ~~~~------i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~ 136 (493)
T 2uy1_A 63 KKFK------LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE 136 (493)
T ss_dssp ---C------THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHH------HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 6999------9999999998768886618999999999973606567999999999999827354699999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99843479789999999774068765511112534679865335787634782059999999999999999999999765
Q 001755 103 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 182 (1017)
Q Consensus 103 ~~~~~~~~~ee~~~~~~~v~~~~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~~~~k~ 182 (1017)
... .+.+.+.. +....|...+ .+|.....
T Consensus 137 ~~~---~~~~~~~~------------------------------------------~~~~~y~~ar-~~y~~~~~----- 165 (493)
T 2uy1_A 137 LNK---ITGKKIVG------------------------------------------DTLPIFQSSF-QRYQQIQP----- 165 (493)
T ss_dssp HCH---HHHHHHHH------------------------------------------HHHHHHHHHH-HHHHHHHH-----
T ss_pred HCC---CCHHHHHH------------------------------------------HHHHHHHHHH-HHHHHHHH-----
T ss_conf 461---01788999------------------------------------------9817889999-99999998-----
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 5676421168754578991009999999999998099-------679999999999865799999999999999809979
Q 001755 183 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD-------FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 255 (1017)
Q Consensus 183 ~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~-------~~~a~~lyeRal~~~p~~~~~W~~ya~~l~~~g~~e 255 (1017)
+ +.+ .++++|..|++||..++. .+++..+|++||..+|.++.+|+.|+.|+...|+.+
T Consensus 166 --~---~~~----------~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 166 --L---IRG----------WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp --H---HHT----------CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHH
T ss_pred --H---HHH----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf --8---743----------4299999999998629865762125999999999998728998999999999998759989
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HH-------CCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999986117996999999999999099999999999986-51-------2999099999999999990998899
Q 001755 256 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH-TE-------TSPGLLEAIIKHANMERRLGNLEDA 327 (1017)
Q Consensus 256 ~A~~v~~rAl~~~~p~~~~i~l~~A~~ee~~g~~~~Ar~iy~~~~-~~-------l~P~~~~~~~~~a~le~r~g~~e~A 327 (1017)
.|+.+|+||+.. |.+..+|+.++.+++.. +. -..+++... .+ ..+....+|+.|+.++++.+++++|
T Consensus 231 ~ar~i~erAi~~--P~~~~l~~~y~~~~e~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 231 KAKKVVERGIEM--SDGMFLSLYYGLVMDEE-AV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHHH--CCSSHHHHHHHHHTTCT-HH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHHHCCHH-HH--HHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999998718--99699999987651056-89--99999999861110122320456189999999999871788999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999851187755728999999999999960899999999999854069999999999999962799468899999
Q 001755 328 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQ 407 (1017)
Q Consensus 328 ~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~~~Ar~i~~~al~~~p~~~~l~~~~a~lE~~~~~~~~~~~a~~ 407 (1017)
|.+|++| . .+.. ...+|+.+|.+++...++.+.||.+|+.+++.+|++..+|..|++||...++. +++|.
T Consensus 306 R~i~~~A-~-~~~~-----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~---~~aR~ 375 (493)
T 2uy1_A 306 RKLFIEL-G-NEGV-----GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE---ENARA 375 (493)
T ss_dssp HHHHHHH-T-TSCC-----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH---HHHHH
T ss_pred HHHHHHH-H-CCCC-----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH---HHHHH
T ss_conf 9999986-2-7788-----85999999999998789968999999999987899789999999999875987---77999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 99998511899999999998999999999999961999999999999997519
Q 001755 408 LVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 460 (1017)
Q Consensus 408 l~e~al~~~~~~~~~~~~~~r~~l~~~~l~f~~~~Gd~~~~~~~~~r~~~~~~ 460 (1017)
+|+++... ..+|..|++||..+||.+++++++++..+.+.
T Consensus 376 l~er~~k~-------------~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 376 LFKRLEKT-------------SRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHSCCB-------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 99999989-------------99999999999977999999999999999845
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=253.10 Aligned_cols=378 Identities=11% Similarity=0.098 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHH-HHHC---CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4999999999989729978892689999999998123---8999999999-9851---2111999999999986149984
Q 001755 34 LLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE---WSRVAMIYTR-ILEN---PIQQLDRYFSSFKEFAASRPLS 106 (1017)
Q Consensus 34 ~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~---~~~~~~iy~R-~l~~---P~~~~~~~~~~f~~~~~~~~~~ 106 (1017)
+..+|.+|||+|...|+ +..+|..||++|+++++ .++++.||.| +..+ |..++|..|..|....++
T Consensus 82 ~~~aR~vyEraL~~fP~---~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~---- 154 (679)
T 4e6h_A 82 WKQVYETFDKLHDRFPL---MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKND---- 154 (679)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC----
T ss_conf 99999999999998899---87999999999986378505999999999998754778989999999999998554----
Q ss_pred CCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHH
Q ss_conf 3479-789999999774068765511112534679865335787634782059999999999999-----9999999997
Q 001755 107 ELRT-AEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE-----MYKKAKEFDS 180 (1017)
Q Consensus 107 ~~~~-~ee~~~~~~~v~~~~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-----~y~~~~~~~~ 180 (1017)
+++ .++.....+.+|+.+++.++. + .......+..|+..... -+....+...
T Consensus 155 -~~~~~~~~r~~vr~~FErAl~~vG~--------~-------------d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 155 -IITGGEEARNIVIQAFQVVVDKCAI--------F-------------EPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp -STTTHHHHHHHHHHHHHHHHHHTTT--------T-------------CSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHCC--------C-------------CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf -3456501389999999999998196--------6-------------55653999999999986354576778768999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHH------HHH-CCC----
Q ss_conf 655676421168754578991009999999999998099-------------67999999999------986-579----
Q 001755 181 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD-------------FNKVVKLYERC------LIA-CAN---- 236 (1017)
Q Consensus 181 k~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g~-------------~~~a~~lyeRa------l~~-~p~---- 236 (1017)
.|..|+++|..|..+. -.+|..|..|+...+. +..++..|... |.. .|.
T Consensus 213 ~R~iy~raL~iP~~~~-------~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCL-------ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHTTSCCSSH-------HHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHHHHHHHHHCCCHHH-------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999982863779-------999999999997358311889998733777889999999999998675116654320
Q ss_pred ---------------CHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH-
Q ss_conf ---------------9999999999999809-------97999999999998611799699999999999909999999-
Q 001755 237 ---------------YPEYWIRYVLCMEASG-------SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR- 293 (1017)
Q Consensus 237 ---------------~~~~W~~ya~~l~~~g-------~~e~A~~v~~rAl~~~~p~~~~i~l~~A~~ee~~g~~~~Ar- 293 (1017)
...+|..|+.|+...+ ..+.++.+|++|+..+ |..+++|+.||.+++.+|+.++|+
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred CHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 000258998664899999999999999848766641016899999999999876-9977999999999986286789999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-----------CCCC-----CCCHHHHHHHHHHH
Q ss_conf 9999986512999099999999999990998899999999998511-----------8775-----57289999999999
Q 001755 294 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK-----------GKEH-----SQTLPMLYAQYSRF 357 (1017)
Q Consensus 294 ~iy~~~~~~l~P~~~~~~~~~a~le~r~g~~e~A~~iye~al~~~~-----------~~~~-----~~~~~~l~~~~a~~ 357 (1017)
++|++++. .+|....+|+.++.++.+.|++++|+.+|++++...+ ..+. ......+|+.|++|
T Consensus 365 ~il~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999998-68987799999999999848899999999999988787766664116741245554113369999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999608999999999998540-6999999999999996279946889999999998511899999999998999999999
Q 001755 358 LHLVSRNAEKARQILVDSLDH-VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL 436 (1017)
Q Consensus 358 l~~~~g~~~~Ar~i~~~al~~-~p~~~~l~~~~a~lE~~~~~~~~~~~a~~l~e~al~~~~~~~~~~~~~~r~~l~~~~l 436 (1017)
+.+ .++++.||++|.+|++. .+....+|+.++.+|...+. +.+.++++|+++++.+++++ .+|..|+
T Consensus 444 erR-~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~--d~e~Ar~ife~~Lk~~p~~~---------~~w~~y~ 511 (679)
T 4e6h_A 444 MKR-IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK--DTKTACKVLELGLKYFATDG---------EYINKYL 511 (679)
T ss_dssp HHH-HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS--CCHHHHHHHHHHHHHHTTCH---------HHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCCCH---------HHHHHHH
T ss_conf 987-08889999999999973689886999999999999689--88999999999998789953---------9999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999619999999999999975199
Q 001755 437 EFLGLFGDAQLIKKAEDRHARLFLP 461 (1017)
Q Consensus 437 ~f~~~~Gd~~~~~~~~~r~~~~~~~ 461 (1017)
+|+...|+.+.++.+++++.+..++
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9998089778999999999871688
No 5
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=1.00 E-value=1 Score=228.92 Aligned_cols=124 Identities=38% Similarity=0.657 Sum_probs=110.3
Q ss_pred CCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEEE----CCCCCCCCCCHHHHHHHHHCCCCCC--EEEEEEECCCCC
Q ss_conf 7221111028788882015903231015688418977----5985444010587999763199832--568741024448
Q 001755 567 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRV----DGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSW 640 (1017)
Q Consensus 567 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~----~g~~~~~~~~~~~I~~~i~~l~~~~--~~i~s~d~q~s~ 640 (1017)
.+.+||+.||++||++|+++|+.||+||.++|++++. +|+....+.|..+|+++|++||+++ ++|.++||||++
T Consensus 8 ~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qps~ 87 (140)
T 3q90_A 8 SPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATL 87 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEECG
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEC
T ss_conf 99999999999999998629999875613685499974577984601145799999999708975625998768878808
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC---CEEEEECCEEEEECCCCC
Q ss_conf 995699999898836976542136899977709---917998456884038876
Q 001755 641 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFLDEEPV 691 (1017)
Q Consensus 641 ~~~ilv~V~G~~~~~~~~~~~~F~qtF~L~~~~---~~y~V~ndifr~~~~~~~ 691 (1017)
++||||+|+|.++.++. ++++|+|||+|+|++ ++|||+||||||+|+.+.
T Consensus 88 ~~gilI~V~G~l~~~~~-~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~~ 140 (140)
T 3q90_A 88 NDGVVVQVMGLLSNNNQ-ALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFG 140 (140)
T ss_dssp GGCEEEEEEEEEECTTC-CCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC--
T ss_pred CCCEEEEEEEEEECCCC-CCCEEEEEEEEEECCCCCCCEEEEEEEEEEEHHHCC
T ss_conf 99999999999961999-861788999995668778989999878585566559
No 6
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=221.98 Aligned_cols=116 Identities=35% Similarity=0.612 Sum_probs=105.4
Q ss_pred CCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCC--EEEEEEECCCCCCCCE
Q ss_conf 72211110287888820159032310156884189775985444010587999763199832--5687410244489956
Q 001755 567 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGV 644 (1017)
Q Consensus 567 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~i~~l~~~~--~~i~s~d~q~s~~~~i 644 (1017)
.|.+||+.||++||++|+++|+.||+||.++|++++++|+.+. |..+|+++|++||+++ ++|.++||||++++||
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~~~~---G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~gi 78 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVV---GQREIHNRIQQLNFNDCHAKISQVDAQATLGNGV 78 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCCCEE---SHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGGEE
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHECCCCEEEECCCCEEC---CHHHHHHHHHCCCCCCEEEEEECCCCEECCCCCE
T ss_conf 9899999999999998846999986435046369975886840---8999999998099864289996144168399989
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEEEC-CEEEEECCEEEEE
Q ss_conf 99999898836976542136899977709-9179984568840
Q 001755 645 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 686 (1017)
Q Consensus 645 lv~V~G~~~~~~~~~~~~F~qtF~L~~~~-~~y~V~ndifr~~ 686 (1017)
+|+|+|.++.++. +.|+|+|||+|+|++ ++|||+||||||+
T Consensus 79 li~V~G~l~~~~~-~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 79 VVQVTGELSNDGQ-PMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEESTTC-CCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEECCC-CCCEEEEEEEEEECCCCCEEEEEEEEECC
T ss_conf 9999999975899-87258899999886999799998897549
No 7
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=221.85 Aligned_cols=250 Identities=20% Similarity=0.277 Sum_probs=219.0
Q ss_pred CCCCHHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------CCCH-------HH
Q ss_conf 9910099999999999980----996----799999999998657999999999999998-------0997-------99
Q 001755 199 LSVTELENWHNYLDFIERD----GDF----NKVVKLYERCLIACANYPEYWIRYVLCMEA-------SGSM-------DL 256 (1017)
Q Consensus 199 l~~~~l~~W~~yl~~e~~~----g~~----~~a~~lyeRal~~~p~~~~~W~~ya~~l~~-------~g~~-------e~ 256 (1017)
.++.++.+|..|++||.++ ++. ++++.+|++||..+|.++++|+.|+.++.. .|++ ++
T Consensus 3 ~~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 82 (308)
T 2ond_A 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 82 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHCCCCHHH
T ss_conf 57999999999999987496668855899999999999999876898799999999998735343312540000001699
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999986117996999999999999099999999999986512999099-99999999999099889999999999
Q 001755 257 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE-AIIKHANMERRLGNLEDAFSLYEQAI 335 (1017)
Q Consensus 257 A~~v~~rAl~~~~p~~~~i~l~~A~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~-~~~~~a~le~r~g~~e~A~~iye~al 335 (1017)
|+.+|+||+....|++..+|+.++.+++..|++++|+.+|++++ .+.|.... +|+.++.++.+.|++++|+.+|++++
T Consensus 83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999998595247999998999885589999999999998-15366735899999999998448899999999998
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf 85118775572899999999999996089999999999985406999999999999996279946889999999998511
Q 001755 336 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 415 (1017)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~~~Ar~i~~~al~~~p~~~~l~~~~a~lE~~~~~~~~~~~a~~l~e~al~~ 415 (1017)
...+.. +.+++.++.+++...|++++|+++|+++++.+|.+..+|..++.++...+.. +.++.+|++++..
T Consensus 162 ~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~---~~A~~~~~~al~~ 232 (308)
T 2ond_A 162 EDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED---NNTRVLFERVLTS 232 (308)
T ss_dssp TSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHS
T ss_pred HCCCCC------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHC
T ss_conf 568988------7999999999998759979999999999876788299999999999988998---9999999999745
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999999998999999999999961999999999999997519998
Q 001755 416 NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHR 463 (1017)
Q Consensus 416 ~~~~~~~~~~~~r~~l~~~~l~f~~~~Gd~~~~~~~~~r~~~~~~~~~ 463 (1017)
.+ +++.....+|..|+.|+..+|+.+.+..+++++.+.+|+..
T Consensus 233 ~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 233 GS-----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 68-----99899999999999999984998999999999998765302
No 8
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=220.72 Aligned_cols=360 Identities=15% Similarity=0.227 Sum_probs=261.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 65798740324999999999989729978892689999999998---------123899999999998512111999999
Q 001755 24 YYLCPNNFFFLLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILENPIQQLDRYFS 94 (1017)
Q Consensus 24 ~~~~~~~~~~~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~---------~~~~~~~~~iy~R~l~~P~~~~~~~~~ 94 (1017)
..++.+. -...++++|++++..+|.|+.++.+|..|++||.+ ++++++++.+|+|++.+|..++..+|.
T Consensus 92 ~~~~~~~--a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 92 TKGKLPS--YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HTTTSTT--HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HCCCHHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 7465046--89999999999999778886607999999999960777653787737999999999999666635999999
Q ss_pred HHHHHHCCCCCC---CCC--CHHHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 999986149984---347--978999999977406------876551111253467986533578763478205999999
Q 001755 95 SFKEFAASRPLS---ELR--TAEEVDAAAVAVAAA------PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 163 (1017)
Q Consensus 95 ~f~~~~~~~~~~---~~~--~~ee~~~~~~~v~~~------~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (1017)
.|..+....... .++ ...++..++ .++.. .++.. .. ..|+.. .. ........+..
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~-~~~~~~~~~~~~l~~~-----~~--~~~p~~----~~--~~~~~~~~w~~ 235 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNAR-RVAKEYETVMKGLDRN-----AP--SVPPQN----TP--QEAQQVDMWKK 235 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHCCSS-----SC--CCCCC------C--CHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-----CC--CCCCCC----CH--HHHHHHHHHHH
T ss_conf 99999972166679999998528888799-9999999999974203-----45--589999----86--57999999999
Q ss_pred HHHHHHHHHH---HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-------CCCHH-------HHHH
Q ss_conf 9999999999---99-99997655676421168754578991009999999999998-------09967-------9999
Q 001755 164 YIAVREEMYK---KA-KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER-------DGDFN-------KVVK 225 (1017)
Q Consensus 164 ~i~~~~~~y~---~~-~~~~~k~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~-------~g~~~-------~a~~ 225 (1017)
|+...+.-.. .. ....+.+..|+++|.. .|...++|..|+.++.. .|+++ .++.
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99998709755775126889999999999985--------7897799999999999835465532651221211499999
Q ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9999998-65799999999999999809979999999999986117996-999999999999099999999999986512
Q 001755 226 LYERCLI-ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-EIHLFAARFKEQNGDIDGARAAYQLVHTET 303 (1017)
Q Consensus 226 lyeRal~-~~p~~~~~W~~ya~~l~~~g~~e~A~~v~~rAl~~~~p~~~-~i~l~~A~~ee~~g~~~~Ar~iy~~~~~~l 303 (1017)
+|+|++. .+|.+..+|+.|+.++...|++++|+.+|++++.+. |.++ .+|+.++.++.+.|++++|+++|++++ ..
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al-~~ 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-ED 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HC
T ss_conf 99999998686657999999999986388999999999985764-56830999999999998068899999999997-35
Q ss_pred CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9990999999999999-909988999999999985118775572899999999999996089999999999985406999
Q 001755 304 SPGLLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 382 (1017)
Q Consensus 304 ~P~~~~~~~~~a~le~-r~g~~e~A~~iye~al~~~~~~~~~~~~~~l~~~~a~~l~~~~g~~~~Ar~i~~~al~~~p~~ 382 (1017)
.|....+++..+.++. ..|+.++|+.+|+++++..|++ +.+|..|+.++.. .|++++||.+|++++...|.+
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~~-~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHTT-TTCHHHHHHHHHHHHHSCCSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCCCCC
T ss_conf 577508999999999988078359999999999878997------8999999999986-798866999999998415798
Q ss_pred H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9----999999999962799468899999999985118999
Q 001755 383 K----PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 419 (1017)
Q Consensus 383 ~----~l~~~~a~lE~~~~~~~~~~~a~~l~e~al~~~~~~ 419 (1017)
+ .+|..|+.||..+|+. +.+..++.+++..+|++
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~---~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDL---ASILKVEKRRFTAFREE 496 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHCCHH
T ss_conf 788999999999999982999---99999999999877311
No 9
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=211.02 Aligned_cols=115 Identities=23% Similarity=0.436 Sum_probs=104.4
Q ss_pred CCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCC-------
Q ss_conf 2211110287888820159032310156884189775985444010587999763199832568741024448-------
Q 001755 568 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW------- 640 (1017)
Q Consensus 568 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~i~~l~~~~~~i~s~d~q~s~------- 640 (1017)
+.+||+.||++||++|+++|+.|++||.++|.|+ |+|+.+ .|..+|.++|++||+++++|.++||||++
T Consensus 33 a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls-~~g~~~---~G~~~I~~~l~~Lp~~~h~I~s~D~qp~~~~~~~q~ 108 (154)
T 3nv0_B 33 LCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAV-WNGNPI---NGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDM 108 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-ETTEEE---ESHHHHHHHHHHSCCEEEEEEEEEEEECCTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEE-ECCEEC---CCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCC
T ss_conf 9999999999999999579999999866995799-999462---269999999983998579998799877475356777
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCEEEEECCEEEEEC
Q ss_conf 99569999989883697654213689997770991799845688403
Q 001755 641 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 687 (1017)
Q Consensus 641 ~~~ilv~V~G~~~~~~~~~~~~F~qtF~L~~~~~~y~V~ndifr~~~ 687 (1017)
+++|+|+|+|.++.++. +.|+|+|||+|+|++++|||+||||||+|
T Consensus 109 ~~~ilI~V~G~l~~~~~-~~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 109 SGGMLLNVAGAVTVDGD-SKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp TTCEEEEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred CCEEEEEEEEEEEECCC-CCEEEEEEEEEEEECCEEEEEEEEEEECC
T ss_conf 87599999999997997-86267799999970998999963888459
No 10
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=208.97 Aligned_cols=353 Identities=12% Similarity=0.062 Sum_probs=239.5
Q ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCHHHHHHHHHHHH
Q ss_conf 3568657-987403249999999999897299788926899999999981238999999999-98512111999999999
Q 001755 20 SVDGYYL-CPNNFFFLLICFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR-ILENPIQQLDRYFSSFK 97 (1017)
Q Consensus 20 ~~~~~~~-~~~~~~~~~~iR~~fEral~~~G~d~~s~~lW~~Yi~fE~~~~~~~~~~~iy~R-~l~~P~~~~~~~~~~f~ 97 (1017)
+.+++.+ +-+. +|.+||+||.+.|. ++.++++.||.| +..+|..++|..|..|.
T Consensus 2 ~~e~~~~~~i~~------aR~vyer~l~~~P~------------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~ 57 (493)
T 2uy1_A 2 DAEEKMGVELSS------PSAIMEHARRLYMS------------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYV 57 (493)
T ss_dssp ----------CC------HHHHHHHHHHHHHT------------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred CHHHHCCCCHHH------HHHHHHHHHHHCCC------------------CCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 867770764688------99999999987799------------------999999999999856699979999999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98614998434797899999997740687655111125346798653357876347820599999999999999999999
Q 001755 98 EFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKE 177 (1017)
Q Consensus 98 ~~~~~~~~~~~~~~ee~~~~~~~v~~~~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~y~~~~~ 177 (1017)
...+. ....+. .+|..++..++ . .......+.+|+...+..-.....
T Consensus 58 ~~~~~-~~~~i~----------~~fe~al~~vg----------~------------d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 58 RKVSQ-KKFKLY----------EVYEFTLGQFE----------N------------YWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp HHHC-----CTH----------HHHHHHHHHST----------T------------CTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred HHHCC-HHHHHH----------HHHHHHHHHCC----------C------------CCCCHHHHHHHHHHHHHCHHHHHH
T ss_conf 98475-699999----------99999998768----------8------------866189999999999736065679
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHHHCCC-CHHHHHH
Q ss_conf 99765567642116875457899100999999999999809-------------967999999999986579-9999999
Q 001755 178 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-------------DFNKVVKLYERCLIACAN-YPEYWIR 243 (1017)
Q Consensus 178 ~~~k~~~fE~~I~r~y~~~~~l~~~~l~~W~~yl~~e~~~g-------------~~~~a~~lyeRal~~~p~-~~~~W~~ 243 (1017)
....+..|+++|..|..+. -.+|..|..|+...+ .+.+++.+|+.+....+. ...+|..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~-------~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~ 177 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSL-------SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAAR 177 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTH-------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHH-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999999999982735469-------999999999998746101788999981788999999999998874342999999
Q ss_pred HHHHHHHCC--C-----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999809--9-----799999999999861179969999999999990999999999999865129990999999999
Q 001755 244 YVLCMEASG--S-----MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 316 (1017)
Q Consensus 244 ya~~l~~~g--~-----~e~A~~v~~rAl~~~~p~~~~i~l~~A~~ee~~g~~~~Ar~iy~~~~~~l~P~~~~~~~~~a~ 316 (1017)
|+.|+.... . .+.++.+|++|+..+ |..+.+|+.|+.++++.|++++|+.+|++++. . |....+|+.++.
T Consensus 178 y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~-~-P~~~~l~~~y~~ 254 (493)
T 2uy1_A 178 LIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-M-SDGMFLSLYYGL 254 (493)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CCSSHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-C-CCCHHHHHHHHH
T ss_conf 99998629865762125999999999998728-99899999999999875998999999999871-8-996999999876
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99990998899999999998511---877557289999999999999608999999999998540699999999999999
Q 001755 317 MERRLGNLEDAFSLYEQAIAIEK---GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 393 (1017)
Q Consensus 317 le~r~g~~e~A~~iye~al~~~~---~~~~~~~~~~l~~~~a~~l~~~~g~~~~Ar~i~~~al~~~p~~~~l~~~~a~lE 393 (1017)
++. .++ ....++++.+.... ..........+|+.|++|+.+ .++++.||.+|+++ ...+.+..+|..++.||
T Consensus 255 ~~e-~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r-~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 255 VMD-EEA--VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK-KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIE 329 (493)
T ss_dssp HTT-CTH--HHHHHHHHTC----------CHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHH
T ss_pred HCC-HHH--HHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHH
T ss_conf 510-568--99999999986111012232045618999999999987-17889999999986-27788859999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 62799468899999999985118999999999989999999999999619999999999999
Q 001755 394 SIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 455 (1017)
Q Consensus 394 ~~~~~~~~~~~a~~l~e~al~~~~~~~~~~~~~~r~~l~~~~l~f~~~~Gd~~~~~~~~~r~ 455 (1017)
...+. +.+.++++|++++..+++.+ .+|..|++|+...|+.+.++.++++.
T Consensus 330 ~~~~~--d~~~ar~ife~al~~~~~~~---------~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 330 YYATG--SRATPYNIFSSGLLKHPDST---------LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHC--CSHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCC--CHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98789--96899999999998789978---------99999999998759877799999999
Done!