Query 001757
Match_columns 1017
No_of_seqs 475 out of 2685
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0432 Valyl-tRNA synthetase 100.0 3E-245 7E-250 2101.4 74.2 875 122-1013 21-900 (995)
2 PLN02381 valyl-tRNA synthetase 100.0 4E-215 1E-219 2004.4 87.5 961 48-1010 2-963 (1066)
3 COG0525 ValS Valyl-tRNA synthe 100.0 8E-215 2E-219 1900.4 72.2 781 143-1011 1-783 (877)
4 PTZ00419 valyl-tRNA synthetase 100.0 3E-198 7E-203 1861.1 81.6 860 136-1010 17-893 (995)
5 PRK05729 valS valyl-tRNA synth 100.0 2E-185 4E-190 1726.8 73.7 775 142-1011 4-780 (874)
6 PLN02943 aminoacyl-tRNA ligase 100.0 1E-181 3E-186 1693.5 76.5 780 142-1009 56-855 (958)
7 TIGR00422 valS valyl-tRNA synt 100.0 2E-181 4E-186 1691.9 75.2 784 143-1012 1-787 (861)
8 PRK14900 valS valyl-tRNA synth 100.0 4E-181 9E-186 1699.7 77.0 788 140-1011 12-810 (1052)
9 PTZ00427 isoleucine-tRNA ligas 100.0 5E-179 1E-183 1678.3 77.2 810 141-1012 66-1020(1205)
10 PRK06039 ileS isoleucyl-tRNA s 100.0 6E-176 1E-180 1651.0 76.2 785 141-1008 5-857 (975)
11 COG0060 IleS Isoleucyl-tRNA sy 100.0 1E-175 3E-180 1581.0 56.1 757 125-967 6-827 (933)
12 PLN02882 aminoacyl-tRNA ligase 100.0 7E-173 2E-177 1629.2 76.4 790 144-1012 5-894 (1159)
13 PRK13804 ileS isoleucyl-tRNA s 100.0 2E-172 5E-177 1610.4 76.3 789 125-1010 12-896 (961)
14 PRK05743 ileS isoleucyl-tRNA s 100.0 2E-172 4E-177 1608.2 71.8 787 124-1011 6-857 (912)
15 PLN02843 isoleucyl-tRNA synthe 100.0 5E-172 1E-176 1606.9 75.2 793 150-1011 6-900 (974)
16 PRK13208 valS valyl-tRNA synth 100.0 3E-168 7E-173 1561.5 74.9 782 142-1012 5-790 (800)
17 TIGR00392 ileS isoleucyl-tRNA 100.0 4E-164 9E-169 1536.1 68.0 762 143-975 2-841 (861)
18 PLN02959 aminoacyl-tRNA ligase 100.0 9E-148 2E-152 1397.6 66.5 733 143-967 9-920 (1084)
19 TIGR00395 leuS_arch leucyl-tRN 100.0 4E-144 8E-149 1356.3 64.3 731 151-992 2-841 (938)
20 PF00133 tRNA-synt_1: tRNA syn 100.0 2E-145 5E-150 1316.2 38.5 562 155-779 1-601 (601)
21 KOG0433 Isoleucyl-tRNA synthet 100.0 1E-140 2E-145 1203.5 56.9 795 122-1007 17-888 (937)
22 PRK12300 leuS leucyl-tRNA synt 100.0 2E-138 4E-143 1299.7 56.3 701 190-1007 1-806 (897)
23 KOG0434 Isoleucyl-tRNA synthet 100.0 3E-135 6E-140 1145.7 48.9 785 144-1011 5-881 (1070)
24 TIGR00396 leuS_bact leucyl-tRN 100.0 1E-134 2E-139 1255.6 44.8 644 147-940 1-775 (842)
25 PRK00390 leuS leucyl-tRNA synt 100.0 4E-134 9E-139 1248.5 48.5 648 143-958 1-753 (805)
26 PLN02563 aminoacyl-tRNA ligase 100.0 2E-133 4E-138 1245.8 44.1 642 143-941 76-891 (963)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 7E-105 1E-109 958.8 44.0 649 143-944 1-752 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 2E-98 4E-103 850.4 38.3 649 151-941 34-798 (876)
29 PRK12268 methionyl-tRNA synthe 100.0 3E-88 6.5E-93 815.6 40.5 505 175-937 3-521 (556)
30 cd00817 ValRS_core catalytic c 100.0 4.1E-88 8.8E-93 776.8 33.5 380 175-778 1-382 (382)
31 TIGR00398 metG methionyl-tRNA 100.0 1.2E-86 2.6E-91 797.4 44.2 490 177-919 1-503 (530)
32 PRK12267 methionyl-tRNA synthe 100.0 9.4E-83 2E-87 778.4 43.2 470 174-919 3-478 (648)
33 PRK00133 metG methionyl-tRNA s 100.0 1.4E-82 3E-87 778.2 43.8 484 175-919 2-503 (673)
34 KOG0437 Leucyl-tRNA synthetase 100.0 4.5E-82 9.8E-87 719.8 36.3 722 150-963 15-906 (1080)
35 PLN02610 probable methionyl-tR 100.0 2.6E-80 5.6E-85 760.8 45.4 493 172-919 14-532 (801)
36 PRK11893 methionyl-tRNA synthe 100.0 1.8E-80 3.8E-85 741.8 42.7 464 175-919 1-476 (511)
37 PLN02224 methionine-tRNA ligas 100.0 4E-78 8.6E-83 722.5 43.0 478 162-919 51-546 (616)
38 cd00818 IleRS_core catalytic c 100.0 4.8E-78 1.1E-82 682.8 29.0 338 175-778 1-338 (338)
39 COG0143 MetG Methionyl-tRNA sy 100.0 9.6E-76 2.1E-80 687.6 41.8 488 174-919 4-512 (558)
40 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.3E-67 2.7E-72 593.0 26.8 312 176-778 1-312 (312)
41 KOG0436 Methionyl-tRNA synthet 100.0 1.4E-62 2.9E-67 534.2 32.1 471 174-920 38-528 (578)
42 PF09334 tRNA-synt_1g: tRNA sy 100.0 2.1E-61 4.6E-66 555.1 16.9 375 177-801 1-391 (391)
43 cd00814 MetRS_core catalytic c 100.0 1.5E-59 3.2E-64 528.9 25.4 309 176-778 1-319 (319)
44 cd00812 LeuRS_core catalytic c 100.0 9.9E-56 2.1E-60 496.4 21.9 296 176-780 1-314 (314)
45 KOG1247 Methionyl-tRNA synthet 100.0 7.8E-43 1.7E-47 379.5 23.9 496 172-919 11-520 (567)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 2.2E-41 4.7E-46 398.0 30.0 359 166-868 16-376 (463)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 4.6E-36 1E-40 362.7 31.7 380 166-867 53-437 (651)
48 TIGR00435 cysS cysteinyl-tRNA 100.0 5.2E-36 1.1E-40 351.8 27.2 355 166-857 14-371 (465)
49 PRK12418 cysteinyl-tRNA synthe 100.0 1.3E-34 2.7E-39 329.1 23.3 342 174-866 9-362 (384)
50 TIGR03447 mycothiol_MshC cyste 100.0 1.2E-34 2.5E-39 330.6 23.0 337 173-857 35-382 (411)
51 PRK14536 cysS cysteinyl-tRNA s 100.0 1.2E-31 2.7E-36 312.9 26.6 355 183-857 30-399 (490)
52 PLN02946 cysteine-tRNA ligase 100.0 5.2E-31 1.1E-35 310.4 23.9 368 166-867 73-443 (557)
53 PRK14535 cysS cysteinyl-tRNA s 100.0 1.7E-30 3.8E-35 306.8 24.1 333 184-857 256-607 (699)
54 cd00672 CysRS_core catalytic c 100.0 2.9E-30 6.2E-35 273.8 16.2 94 166-279 13-107 (213)
55 PRK01611 argS arginyl-tRNA syn 100.0 1.9E-28 4.2E-33 292.2 29.9 120 173-311 109-229 (507)
56 PRK14534 cysS cysteinyl-tRNA s 100.0 4.8E-28 1E-32 281.4 26.2 351 182-857 27-392 (481)
57 cd07961 Anticodon_Ia_Ile_ABEc 100.0 3.2E-27 6.9E-32 245.7 19.7 179 778-961 1-183 (183)
58 cd00674 LysRS_core_class_I cat 99.9 1.4E-26 3E-31 261.2 19.9 125 174-310 18-151 (353)
59 cd07960 Anticodon_Ia_Ile_BEm A 99.9 3.7E-25 8E-30 229.7 20.4 178 778-960 1-179 (180)
60 COG0215 CysS Cysteinyl-tRNA sy 99.9 6.9E-24 1.5E-28 241.8 20.1 335 184-857 30-368 (464)
61 PRK00750 lysK lysyl-tRNA synth 99.9 2.9E-22 6.2E-27 238.0 22.2 99 174-279 22-128 (510)
62 PF08264 Anticodon_1: Anticodo 99.9 1.2E-22 2.5E-27 204.7 13.8 147 823-977 1-148 (153)
63 PF13603 tRNA-synt_1_2: Leucyl 99.9 2.8E-22 6.1E-27 206.7 10.3 127 356-485 10-185 (185)
64 TIGR00456 argS arginyl-tRNA sy 99.9 9.5E-20 2.1E-24 220.2 33.5 221 661-903 334-559 (566)
65 PF01406 tRNA-synt_1e: tRNA sy 99.9 2.9E-21 6.2E-26 211.0 17.4 123 176-320 10-133 (300)
66 KOG2007 Cysteinyl-tRNA synthet 99.8 6.1E-19 1.3E-23 198.4 27.2 169 656-870 259-428 (586)
67 COG0018 ArgS Arginyl-tRNA synt 99.7 1.9E-15 4.1E-20 180.6 34.6 216 660-903 340-570 (577)
68 TIGR00467 lysS_arch lysyl-tRNA 99.7 4.1E-17 9E-22 192.9 19.0 97 175-280 18-122 (515)
69 PRK12451 arginyl-tRNA syntheta 99.7 4.9E-14 1.1E-18 170.3 37.3 210 660-903 330-555 (562)
70 cd07962 Anticodon_Ia_Val Antic 99.7 4.7E-16 1E-20 154.0 15.7 135 778-917 1-135 (135)
71 cd00671 ArgRS_core catalytic c 99.6 1.4E-15 3.1E-20 162.2 14.0 123 177-321 2-124 (212)
72 PLN02286 arginine-tRNA ligase 99.6 1E-12 2.2E-17 159.1 38.5 215 661-903 334-569 (576)
73 cd07959 Anticodon_Ia_Leu_AEc A 99.6 5.1E-15 1.1E-19 142.2 14.3 116 778-917 1-117 (117)
74 cd07958 Anticodon_Ia_Leu_BEm A 99.6 4.1E-14 8.8E-19 135.5 13.3 117 778-917 1-117 (117)
75 cd07957 Anticodon_Ia_Met Antic 99.5 1E-13 2.2E-18 135.2 11.9 96 819-917 34-129 (129)
76 PF00750 tRNA-synt_1d: tRNA sy 99.3 2.7E-11 5.9E-16 138.9 15.3 138 172-312 17-194 (354)
77 cd07375 Anticodon_Ia_like Anti 99.3 6.6E-11 1.4E-15 112.6 13.4 116 781-906 2-117 (117)
78 cd00802 class_I_aaRS_core cata 99.1 2.4E-10 5.1E-15 114.5 8.1 77 179-272 1-77 (143)
79 PF01921 tRNA-synt_1f: tRNA sy 98.6 5.3E-08 1.2E-12 110.0 4.9 100 173-280 21-128 (360)
80 COG1384 LysS Lysyl-tRNA synthe 98.5 2.3E-06 5E-11 99.5 16.2 98 175-279 19-124 (521)
81 cd09287 GluRS_non_core catalyt 98.1 7.7E-06 1.7E-10 88.5 7.7 92 182-310 6-97 (240)
82 PRK04156 gltX glutamyl-tRNA sy 97.9 3.1E-05 6.8E-10 93.1 8.7 94 182-312 106-199 (567)
83 TIGR00463 gltX_arch glutamyl-t 97.6 0.00031 6.7E-09 84.6 10.9 96 178-312 94-189 (560)
84 PLN03233 putative glutamate-tR 97.6 0.00025 5.5E-09 84.5 9.7 96 178-312 12-107 (523)
85 PLN02907 glutamate-tRNA ligase 97.5 0.00038 8.1E-09 86.8 10.7 94 178-310 214-307 (722)
86 PTZ00437 glutaminyl-tRNA synth 97.5 0.00033 7.2E-09 83.8 9.4 96 178-312 52-147 (574)
87 PTZ00402 glutamyl-tRNA synthet 97.5 0.00033 7.1E-09 84.5 9.4 93 178-309 53-146 (601)
88 TIGR03838 queuosine_YadB gluta 97.5 0.00029 6.4E-09 78.0 8.3 91 183-312 6-97 (272)
89 PF00749 tRNA-synt_1c: tRNA sy 97.4 0.00047 1E-08 78.2 9.4 92 183-312 7-98 (314)
90 cd00807 GlnRS_core catalytic c 97.4 0.00047 1E-08 74.6 8.9 91 181-310 5-95 (238)
91 TIGR00440 glnS glutaminyl-tRNA 97.3 0.00065 1.4E-08 81.1 8.7 93 182-312 5-97 (522)
92 COG0008 GlnS Glutamyl- and glu 97.3 0.00078 1.7E-08 79.8 9.2 96 178-312 10-106 (472)
93 PLN02859 glutamine-tRNA ligase 97.3 0.00082 1.8E-08 83.1 9.4 96 178-312 265-360 (788)
94 PRK05710 glutamyl-Q tRNA(Asp) 97.2 0.00093 2E-08 74.9 8.9 95 179-312 7-102 (299)
95 PRK05347 glutaminyl-tRNA synth 97.2 0.00096 2.1E-08 80.0 9.2 97 178-312 30-126 (554)
96 cd00418 GlxRS_core catalytic c 97.2 0.0012 2.7E-08 71.2 9.0 86 182-306 6-92 (230)
97 PRK12558 glutamyl-tRNA synthet 97.2 0.0012 2.6E-08 77.8 9.3 93 181-312 6-98 (445)
98 PRK14895 gltX glutamyl-tRNA sy 97.2 0.0011 2.4E-08 79.1 9.0 94 180-312 7-101 (513)
99 PRK12410 glutamylglutaminyl-tR 97.1 0.0013 2.8E-08 77.2 8.8 91 183-312 5-95 (433)
100 KOG4426 Arginyl-tRNA synthetas 97.1 0.37 8E-06 55.5 27.1 157 689-865 434-609 (656)
101 TIGR00464 gltX_bact glutamyl-t 97.1 0.0014 3.1E-08 78.2 8.6 92 182-312 6-98 (470)
102 PRK14703 glutaminyl-tRNA synth 97.0 0.0014 2.9E-08 81.9 8.3 96 178-312 32-128 (771)
103 cd00808 GluRS_core catalytic c 96.9 0.004 8.6E-08 67.9 9.1 86 182-306 6-100 (239)
104 PLN02627 glutamyl-tRNA synthet 96.8 0.0034 7.3E-08 75.2 8.5 96 178-312 46-150 (535)
105 PRK01406 gltX glutamyl-tRNA sy 96.6 0.0058 1.3E-07 73.2 9.2 95 179-312 6-108 (476)
106 cd07956 Anticodon_Ia_Arg Antic 95.5 0.39 8.5E-06 48.8 15.0 139 756-903 2-149 (156)
107 cd00805 TyrRS_core catalytic c 95.5 0.019 4.1E-07 63.9 5.6 58 656-718 152-210 (269)
108 KOG1147 Glutamyl-tRNA syntheta 95.3 0.043 9.4E-07 64.3 7.8 98 178-314 201-298 (712)
109 PRK13354 tyrosyl-tRNA syntheta 95.1 0.018 3.8E-07 67.8 4.1 60 654-716 185-244 (410)
110 cd00395 Tyr_Trp_RS_core cataly 95.0 0.043 9.3E-07 61.2 6.6 61 654-718 152-214 (273)
111 PRK05912 tyrosyl-tRNA syntheta 94.4 0.032 7E-07 65.6 3.9 59 654-716 187-246 (408)
112 cd00802 class_I_aaRS_core cata 93.3 0.086 1.9E-06 52.7 4.0 50 656-707 94-143 (143)
113 PF00579 tRNA-synt_1b: tRNA sy 92.8 0.12 2.6E-06 58.1 4.8 63 654-716 148-213 (292)
114 KOG1195 Arginyl-tRNA synthetas 92.7 1.6 3.5E-05 51.7 13.6 155 151-308 86-275 (567)
115 cd00418 GlxRS_core catalytic c 92.7 0.41 8.9E-06 52.0 8.4 22 688-709 139-160 (230)
116 PRK12556 tryptophanyl-tRNA syn 92.4 0.12 2.6E-06 59.2 4.1 60 654-714 148-214 (332)
117 PRK12284 tryptophanyl-tRNA syn 91.4 0.16 3.5E-06 59.6 3.6 60 654-714 147-214 (431)
118 COG0495 LeuS Leucyl-tRNA synth 91.2 0.19 4E-06 63.5 4.2 80 477-561 137-231 (814)
119 TIGR00396 leuS_bact leucyl-tRN 91.0 0.23 4.9E-06 63.9 4.7 82 475-561 130-226 (842)
120 cd00808 GluRS_core catalytic c 90.5 0.52 1.1E-05 51.5 6.4 51 656-709 119-169 (239)
121 PLN02563 aminoacyl-tRNA ligase 90.4 0.36 7.8E-06 62.7 5.9 80 475-560 212-305 (963)
122 PRK08560 tyrosyl-tRNA syntheta 90.4 0.3 6.4E-06 56.1 4.6 58 654-715 167-228 (329)
123 TIGR00234 tyrS tyrosyl-tRNA sy 89.7 0.32 7E-06 56.8 4.2 56 656-715 178-234 (377)
124 PRK12282 tryptophanyl-tRNA syn 89.3 0.31 6.8E-06 55.9 3.6 62 653-715 140-209 (333)
125 COG0180 TrpS Tryptophanyl-tRNA 88.8 0.37 8.1E-06 54.5 3.7 62 654-715 144-212 (314)
126 TIGR00233 trpS tryptophanyl-tR 88.7 0.32 7E-06 55.7 3.2 60 654-715 138-206 (328)
127 PTZ00126 tyrosyl-tRNA syntheta 88.4 0.42 9.1E-06 55.8 3.9 59 654-715 209-271 (383)
128 PRK12285 tryptophanyl-tRNA syn 88.1 0.33 7.2E-06 56.4 2.8 59 655-715 203-265 (368)
129 KOG1148 Glutaminyl-tRNA synthe 88.0 1.3 2.8E-05 53.1 7.5 97 177-312 248-344 (764)
130 COG0162 TyrS Tyrosyl-tRNA synt 87.8 0.49 1.1E-05 55.4 4.0 52 656-712 181-234 (401)
131 KOG1149 Glutamyl-tRNA syntheta 87.6 2.7 5.8E-05 48.9 9.5 39 183-223 39-77 (524)
132 cd00806 TrpRS_core catalytic c 85.8 0.8 1.7E-05 51.4 4.2 59 655-715 137-205 (280)
133 PRK12283 tryptophanyl-tRNA syn 84.9 0.47 1E-05 55.3 1.9 24 692-715 254-277 (398)
134 PRK00390 leuS leucyl-tRNA synt 84.8 1.2 2.6E-05 57.3 5.5 86 474-564 132-231 (805)
135 PRK00927 tryptophanyl-tRNA syn 83.9 0.79 1.7E-05 52.7 3.1 61 654-715 137-209 (333)
136 KOG0435 Leucyl-tRNA synthetase 83.6 0.38 8.2E-06 58.3 0.3 75 477-557 160-249 (876)
137 PRK04156 gltX glutamyl-tRNA sy 82.6 3.5 7.5E-05 50.6 7.9 78 688-793 325-409 (567)
138 TIGR00464 gltX_bact glutamyl-t 81.8 3.7 7.9E-05 49.5 7.7 110 657-785 199-310 (470)
139 cd00671 ArgRS_core catalytic c 79.6 2.5 5.3E-05 45.4 4.8 50 658-708 162-212 (212)
140 PRK12285 tryptophanyl-tRNA syn 79.2 12 0.00026 43.7 10.5 61 158-223 40-108 (368)
141 cd00807 GlnRS_core catalytic c 78.3 6.9 0.00015 42.8 7.7 31 756-786 197-227 (238)
142 cd00395 Tyr_Trp_RS_core cataly 75.7 3.7 8.1E-05 45.9 4.9 34 186-223 8-42 (273)
143 PLN02486 aminoacyl-tRNA ligase 75.4 2.9 6.4E-05 48.9 4.2 54 658-715 222-279 (383)
144 PLN02486 aminoacyl-tRNA ligase 75.1 12 0.00027 43.8 9.1 44 174-222 71-115 (383)
145 PRK01406 gltX glutamyl-tRNA sy 75.0 4.7 0.0001 48.7 5.9 108 657-785 209-319 (476)
146 PRK14895 gltX glutamyl-tRNA sy 68.6 12 0.00025 45.6 7.1 51 657-710 198-248 (513)
147 cd00805 TyrRS_core catalytic c 68.0 4.6 0.0001 45.0 3.5 36 185-224 8-44 (269)
148 PTZ00348 tyrosyl-tRNA syntheta 68.0 4.8 0.0001 50.4 3.9 58 654-715 174-236 (682)
149 KOG1195 Arginyl-tRNA synthetas 67.4 64 0.0014 38.9 12.4 192 684-902 355-559 (567)
150 PF05746 DALR_1: DALR anticodo 66.9 28 0.0006 33.2 8.2 81 820-903 32-112 (119)
151 PRK12410 glutamylglutaminyl-tR 65.8 16 0.00035 43.5 7.5 22 688-709 221-242 (433)
152 PF01927 Mut7-C: Mut7-C RNAse 62.1 7.2 0.00016 39.5 3.2 23 204-226 12-34 (147)
153 PLN03233 putative glutamate-tR 62.0 25 0.00053 42.9 8.2 77 690-793 234-317 (523)
154 cd09287 GluRS_non_core catalyt 60.5 27 0.00058 38.4 7.5 30 756-785 199-228 (240)
155 PRK12558 glutamyl-tRNA synthet 55.6 32 0.0007 41.2 7.6 33 675-709 215-247 (445)
156 TIGR00234 tyrS tyrosyl-tRNA sy 54.6 10 0.00023 44.4 3.3 39 177-220 31-70 (377)
157 PRK08560 tyrosyl-tRNA syntheta 54.0 11 0.00024 43.4 3.4 43 176-223 30-72 (329)
158 PRK13354 tyrosyl-tRNA syntheta 53.7 28 0.0006 41.4 6.7 45 175-224 32-77 (410)
159 cd00806 TrpRS_core catalytic c 52.0 10 0.00022 42.7 2.6 36 185-223 7-42 (280)
160 TIGR00463 gltX_arch glutamyl-t 50.7 40 0.00086 41.6 7.5 77 688-792 315-399 (560)
161 PLN02886 aminoacyl-tRNA ligase 48.8 17 0.00037 42.7 3.8 60 654-714 183-266 (389)
162 PRK12284 tryptophanyl-tRNA syn 47.3 36 0.00077 40.5 6.1 97 186-311 11-108 (431)
163 PRK05912 tyrosyl-tRNA syntheta 46.8 17 0.00036 43.2 3.4 41 176-221 33-74 (408)
164 PF00579 tRNA-synt_1b: tRNA sy 46.7 16 0.00035 41.1 3.1 43 176-223 5-47 (292)
165 COG0162 TyrS Tyrosyl-tRNA synt 45.4 31 0.00067 40.8 5.2 32 186-221 41-73 (401)
166 PTZ00402 glutamyl-tRNA synthet 45.0 59 0.0013 40.3 7.7 37 756-792 321-358 (601)
167 PLN02859 glutamine-tRNA ligase 42.5 58 0.0013 41.6 7.3 70 689-785 486-562 (788)
168 PLN02886 aminoacyl-tRNA ligase 41.2 28 0.00061 40.9 4.1 94 186-310 55-149 (389)
169 cd06545 GH18_3CO4_chitinase Th 40.3 1.1E+02 0.0023 33.7 8.3 102 184-308 33-134 (253)
170 KOG2145 Cytoplasmic tryptophan 39.7 30 0.00065 38.6 3.7 31 173-203 82-116 (397)
171 PRK05347 glutaminyl-tRNA synth 39.6 93 0.002 38.3 8.2 36 756-791 303-339 (554)
172 PRK00927 tryptophanyl-tRNA syn 39.3 19 0.00042 41.5 2.3 32 185-220 9-40 (333)
173 PRK05710 glutamyl-Q tRNA(Asp) 39.2 30 0.00066 39.3 3.8 30 679-710 215-244 (299)
174 TIGR00440 glnS glutaminyl-tRNA 38.9 59 0.0013 39.8 6.4 72 684-785 226-303 (522)
175 PLN02381 valyl-tRNA synthetase 38.3 53 0.0011 43.9 6.3 17 184-200 169-185 (1066)
176 PLN02627 glutamyl-tRNA synthet 37.5 96 0.0021 38.1 7.8 34 675-710 268-301 (535)
177 TIGR00233 trpS tryptophanyl-tR 37.4 20 0.00044 41.2 2.1 41 178-223 4-44 (328)
178 smart00836 DALR_1 DALR anticod 36.7 2.7E+02 0.0058 26.6 9.6 81 820-903 35-115 (122)
179 PF04918 DltD_M: DltD central 36.7 32 0.00069 35.5 3.2 25 507-532 24-48 (163)
180 TIGR03838 queuosine_YadB gluta 32.6 40 0.00087 37.8 3.4 30 679-710 208-237 (272)
181 PRK12556 tryptophanyl-tRNA syn 32.6 36 0.00079 39.2 3.1 36 186-223 12-47 (332)
182 PTZ00437 glutaminyl-tRNA synth 31.5 60 0.0013 40.0 4.8 72 696-794 280-358 (574)
183 COG0008 GlnS Glutamyl- and glu 31.4 72 0.0016 38.6 5.5 28 679-708 229-256 (472)
184 cd03016 PRX_1cys Peroxiredoxin 28.9 75 0.0016 33.7 4.6 55 450-511 119-174 (203)
185 PTZ00126 tyrosyl-tRNA syntheta 28.0 54 0.0012 38.6 3.6 41 176-220 66-106 (383)
186 KOG2623 Tyrosyl-tRNA synthetas 26.5 50 0.0011 38.5 2.8 59 654-715 226-286 (467)
187 COG0180 TrpS Tryptophanyl-tRNA 26.3 36 0.00077 38.9 1.7 45 176-226 5-50 (314)
188 PF00749 tRNA-synt_1c: tRNA sy 25.7 65 0.0014 36.9 3.6 49 659-711 203-252 (314)
189 PRK12283 tryptophanyl-tRNA syn 24.7 49 0.0011 39.1 2.4 28 186-218 11-39 (398)
190 PF12569 NARP1: NMDA receptor- 22.3 92 0.002 38.2 4.2 20 14-33 370-389 (517)
191 PRK12282 tryptophanyl-tRNA syn 21.0 47 0.001 38.3 1.3 15 186-200 11-25 (333)
192 cd00598 GH18_chitinase-like Th 20.7 4.1E+02 0.0089 27.6 8.4 44 265-308 94-143 (210)
No 1
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-245 Score=2101.44 Aligned_cols=875 Identities=60% Similarity=1.044 Sum_probs=838.4
Q ss_pred CCCCcCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC-CCCCcEEEECCCCCCCCCCCcchhHHHHH
Q 001757 122 NAEEFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAI 200 (1017)
Q Consensus 122 ~~~~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~-~~k~~f~i~~pPPy~nG~LHiGHal~~~i 200 (1017)
++...+.+.|+.|+|++++.+++..|+|..||++||.||+++|+|+|+.. ...+.|+|+.||||+||.||||||++.++
T Consensus 21 ~~~~~~~~~t~~ge~k~~~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~ai 100 (995)
T KOG0432|consen 21 EEVASYVPSTAPGEKKDLSGPLPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAI 100 (995)
T ss_pred CCcccccCCCCcchhhccCCcccccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHH
Confidence 44578899999999999999999999999999999999999999999986 34579999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001757 201 QDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1017)
Q Consensus 201 ~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW 280 (1017)
+|+++||+||+||+|+|+||+||+||+||++|||+++++.|++||++|||+|+++||+|+++|+++|.+||++||.|+||
T Consensus 101 qD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW 180 (995)
T KOG0432|consen 101 QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDW 180 (995)
T ss_pred HHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEee
Q 001757 281 SRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAY 360 (1017)
Q Consensus 281 ~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~ 360 (1017)
+|++|||||..+++|.++|++||++|+|||++|+|||||.++|+|||+||++++++++|++++|||+.+++||+|++|+|
T Consensus 181 ~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY 260 (995)
T KOG0432|consen 181 DREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAY 260 (995)
T ss_pred cHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchH
Q 001757 361 PLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDF 440 (1017)
Q Consensus 361 ~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy 440 (1017)
+++|+++.|+|+|||||||+||+||||||+|+||+|++|+++.|||+++.+|||+|.+ |||+||||+||||||||++||
T Consensus 261 ~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPiI~D~~-Vd~~fGTGaVKITPaHd~nDy 339 (995)
T KOG0432|consen 261 PVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPIICDIA-VDMEFGTGAVKITPAHDPNDY 339 (995)
T ss_pred eccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccceeeccc-ccccccccceEecCCCChhHH
Confidence 9999999999999999999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeecccccee
Q 001757 441 DVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYV 520 (1017)
Q Consensus 441 ~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi 520 (1017)
++|+||||++++||++||.++..|| +|+||+||+||++|++.|++.||+++.++|+|++|+|+||||+|||+++|||||
T Consensus 340 EvgkRh~L~~~ni~~~dG~l~~~~g-ef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v 418 (995)
T KOG0432|consen 340 EVGKRHNLEFINIFTDDGLLNNVCG-EFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFV 418 (995)
T ss_pred HHHHhcCCCceeEEcCCCceeccch-hccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchhee
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEec
Q 001757 521 NCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVAR 600 (1017)
Q Consensus 521 ~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~ 600 (1017)
+|++|+++|++++ ++|+++|.|+..+++|.+|++|++|||||||+||||+||+|++..+++ ....++|++|+
T Consensus 419 ~c~ema~~A~~av---~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~-----~~ee~~Wvvar 490 (995)
T KOG0432|consen 419 SCKEMAKKALKAV---ESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG-----RAEEDYWVVAR 490 (995)
T ss_pred ehHHHHHHHHHHH---hcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC-----CCccceeEEeC
Confidence 9999999999999 999999999999999999999999999999999999999999976532 23456999999
Q ss_pred CHHHHHHHHhhhc-CCCccccccCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhh
Q 001757 601 DEKEALAVANKKF-SGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIK 679 (1017)
Q Consensus 601 ~~~~~~~~~~~~~-~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~ 679 (1017)
++++|++++..++ |+..++++||+||||||||||+||||++|||++++||+.|||.++++||+||+|||++||+|+|+.
T Consensus 491 seeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~k 570 (995)
T KOG0432|consen 491 SEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLK 570 (995)
T ss_pred CHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhh
Confidence 9999999999999 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCc
Q 001757 680 LGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGT 759 (1017)
Q Consensus 680 l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~Ga 759 (1017)
|+|++||++|++||||||.+|||||||+||||||.|||+|++|++||++|++|||||+|+++|++||+++||+|||+||+
T Consensus 571 LtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGt 650 (995)
T KOG0432|consen 571 LTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGT 650 (995)
T ss_pred hcCCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHH
Q 001757 760 DALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLP-FSCKWILSVLNKAISRTA 838 (1017)
Q Consensus 760 DaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~-~~Drwil~~L~~~i~~v~ 838 (1017)
|||||+||+++.+++|||+|++++++||+|||||||++||+++.++++|.|.........+ .+|+||++||+.+++.|+
T Consensus 651 DALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~ 730 (995)
T KOG0432|consen 651 DALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVN 730 (995)
T ss_pred HHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888887654444333 399999999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCC
Q 001757 839 SSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLP 918 (1017)
Q Consensus 839 ~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~ 918 (1017)
++|+.|+|+.|++++++||+++|||+|+|.+||.+++++.. .+..|..||+.||+.+|+||||||||+||||||+||
T Consensus 731 ~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~---~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 731 ESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEA---LAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHH---HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcc
Confidence 99999999999999999999999999999999999987644 678899999999999999999999999999999999
Q ss_pred CCCCCCCCCCeeecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcceEEEEecCcchHHHHHHhHH
Q 001757 919 QPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHEL 996 (1017)
Q Consensus 919 ~~~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~--~~~~~~i~~~~~~~~~~l~~~~~ 996 (1017)
.+.+ ....||+.++||...+.|.|+++|.+|+.+++++..+|++|+.| ++. .+..+++...++....+++.+.+
T Consensus 808 ~r~~-~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y---~l~~~~~~~v~~~~s~~~~~~~~~~~~~ 883 (995)
T KOG0432|consen 808 RRKG-SKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEY---NLSPKPRGSVFIASSDEEDKSILKEFLD 883 (995)
T ss_pred cCCC-CCCCceEecCCCchhcccCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCceEEEEecCCCcchhHHHHHHH
Confidence 8765 35579999999988899999999999999999999999999999 874 35667787776666678899999
Q ss_pred HHHHhhccCcEEEeccC
Q 001757 997 EIVTLSTSSSLKRISVG 1013 (1017)
Q Consensus 997 ~I~~l~~v~~v~v~~~~ 1013 (1017)
.|.++.+++.|.++.++
T Consensus 884 ~i~~l~~~~~v~i~~~~ 900 (995)
T KOG0432|consen 884 EISTLTNLELVSISSPA 900 (995)
T ss_pred HHHHhhccceeEeccCC
Confidence 99999999999998654
No 2
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=4.5e-215 Score=2004.43 Aligned_cols=961 Identities=82% Similarity=1.349 Sum_probs=854.4
Q ss_pred cccCCcccccccchHHHhhhhhhhhhHHHHHHHHhHHHHHHHHH-HHHHHHHhhhcCCCccccccccccccCCCCCCCCc
Q 001757 48 SSIMTEPEKKIETAEDLERKKKKEEKAKEKELKKLKALEKAEQA-KLKAQQKQEQGGNSLKKSVKKNVKRDDGEDNAEEF 126 (1017)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1017)
++.++++++++..++++++..+++.+++++|.++.|+ .+|++ ++++++++..+.+.+++++|+..+++.+.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1066)
T PLN02381 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKA--AQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENPEDF 79 (1066)
T ss_pred CCcccchhcccCCHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHhccccCCCcccchhhhhhhhhhhcccccc
Confidence 4678889999999999998877665555444443333 33333 22222222121111222222222222222333344
Q ss_pred CCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHH
Q 001757 127 VDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIR 206 (1017)
Q Consensus 127 ~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~R 206 (1017)
..|+|++|+|++++.+|++.|||++||++||++|+++|+|++..+.++++|+|++|||||||.||||||+|++++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~R 159 (1066)
T PLN02381 80 IDPDTPFGQKKRLSSQMAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIR 159 (1066)
T ss_pred CCCCCCcchhhccchhcccCCCHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 58999999999998889999999999999999999999999987667889999999999999999999999999999999
Q ss_pred HHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccc
Q 001757 207 WRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFT 286 (1017)
Q Consensus 207 y~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T 286 (1017)
|+||+||+|+|+|||||||||||.+||++++++.|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+|
T Consensus 160 y~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T 239 (1066)
T PLN02381 160 WKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFT 239 (1066)
T ss_pred HHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCcccc
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCc
Q 001757 287 MDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL 366 (1017)
Q Consensus 287 ~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~ 366 (1017)
|||.|+++|+|+|++||++|||||+.++|||||.|+|+|||+||+|+++.+++++.||++...++||++++|+|++.+++
T Consensus 240 ~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~ 319 (1066)
T PLN02381 240 MDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGL 319 (1066)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHh
Q 001757 367 GEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRH 446 (1017)
Q Consensus 367 ~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~ 446 (1017)
.+|+|||||||||+|++||||||+|+||++|+|++|.|||.++.+|||+|+.+|++++|||+||+|||||++||++|++|
T Consensus 320 ~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~ 399 (1066)
T PLN02381 320 GEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRH 399 (1066)
T ss_pred CEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHc
Confidence 78999999999999999999999999999999999999999999999997645999999999999999999999999999
Q ss_pred CCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHH
Q 001757 447 NLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMA 526 (1017)
Q Consensus 447 ~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~ 526 (1017)
||+++++||++|+|++++|++|.||.+++||+.|++.|++.|++++.+++.|+||+|||||+||+|++++||||+|++++
T Consensus 400 ~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~ 479 (1066)
T PLN02381 400 NLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMA 479 (1066)
T ss_pred CCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHH
Confidence 99999999999999998765799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHH
Q 001757 527 MEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEAL 606 (1017)
Q Consensus 527 ~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 606 (1017)
++|++++..+++++|+|+|++++++|.+||+|++|||||||||||||||+|||..+++.+...+.+++.|+++++..++.
T Consensus 480 ~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 559 (1066)
T PLN02381 480 KQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDAL 559 (1066)
T ss_pred HHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhc
Confidence 99999883334689999999999999999999999999999999999999999744332223344557899888888777
Q ss_pred HHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCc
Q 001757 607 AVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF 686 (1017)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pf 686 (1017)
..++..|++....++|++||||||||||+||++++|||+++++|++|||+|++++|+||+||||+||+++|+.++|++||
T Consensus 560 ~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PF 639 (1066)
T PLN02381 560 LEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPF 639 (1066)
T ss_pred chhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCch
Confidence 66665666655579999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHH
Q 001757 687 TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFAL 766 (1017)
Q Consensus 687 k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L 766 (1017)
++|++||||+|++|+|||||+||||||.++|+|++++.|+.+|..|||+++|+++|.++|+++||+|||+||||||||||
T Consensus 640 k~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l 719 (1066)
T PLN02381 640 RKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFAL 719 (1066)
T ss_pred HHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCH
Q 001757 767 VSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEF 846 (1017)
Q Consensus 767 ~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f 846 (1017)
++++..++|++|+++++.++|+|||||||++||+++++.++|.|........++.+|+||+++|+.+++.++++|++|+|
T Consensus 720 ~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F 799 (1066)
T PLN02381 720 VSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEF 799 (1066)
T ss_pred HcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999888655654322222346789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCC
Q 001757 847 SDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATK 926 (1017)
Q Consensus 847 ~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~ 926 (1017)
+.|++.+++|+|++|||+||+.+|+|+++++...+.++++++.||+.+|+.+++||||||||+|||||+.|+...+....
T Consensus 800 ~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~~~~ 879 (1066)
T PLN02381 800 SDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRK 879 (1066)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccCCCC
Confidence 99999999999999999999999999886532111156789999999999999999999999999999999752111123
Q ss_pred CCeeecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceEEEEecCcchHHHHHHhHHHHHHhhccCc
Q 001757 927 ESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSS 1006 (1017)
Q Consensus 927 ~SI~~~~~P~~~~~~~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~~~~~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~ 1006 (1017)
+||++++||.+++.|.|++++..|+.+++++..+|++|+++.+...+.+.++++.+.+....+.++.+...|++|+++++
T Consensus 880 ~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~~~i~~k~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~ 959 (1066)
T PLN02381 880 DSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEVLEKQKNERLPAFALCRNQEIAAIIKSHQLEILTLANLSS 959 (1066)
T ss_pred CeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHccccccCcCCcEEEEcCCHHHHHHHHHHHHHHHHhhCCCe
Confidence 69999999999999999999999999999999999999997211225667777777776777889999999999999999
Q ss_pred EEEe
Q 001757 1007 LKRI 1010 (1017)
Q Consensus 1007 v~v~ 1010 (1017)
|+++
T Consensus 960 v~~~ 963 (1066)
T PLN02381 960 LKVL 963 (1066)
T ss_pred eeee
Confidence 9886
No 3
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-215 Score=1900.36 Aligned_cols=781 Identities=51% Similarity=0.921 Sum_probs=732.1
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccC
Q 001757 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1017)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D 222 (1017)
|++.|||.++|++||++|+++|+|++......++|+|.+|||||||.||||||++.+++|+++||+||+||+|+|+||||
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D 80 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD 80 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence 46789999999999999999999999975542559999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001757 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1017)
Q Consensus 223 ~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L 302 (1017)
|||||||.+||+++..+ |++++|+|||+|+++||+|++++++.|++||+|||+|+||+|+||||||.++++|+++|++|
T Consensus 81 hAGIaTq~~VEk~l~~~-g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~L 159 (877)
T COG0525 81 HAGIATQVVVEKQLAAE-GITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRL 159 (877)
T ss_pred CCCchHHHHHHHHHHHc-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHH
Confidence 99999999999999766 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccC
Q 001757 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGD 382 (1017)
Q Consensus 303 ~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~ 382 (1017)
|++|||||++++|||||.|+|||||+||+|++.+ |.|++|+||+++++++|+|||||||||+||
T Consensus 160 y~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~----------------g~L~~i~y~l~~~~~~i~VATTRPEtmlgd 223 (877)
T COG0525 160 YEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVE----------------GKLYYIKYPLADGDGYLVVATTRPETLLGD 223 (877)
T ss_pred HHCCceeecCCcccCCCccccchhhhhhccceee----------------eeEEEEEEecCCCCceEEEEecCccccccc
Confidence 9999999999999999999999999999999887 789999999999999999999999999999
Q ss_pred cEEEEcCCCcccccccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCcccc
Q 001757 383 TAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINS 462 (1017)
Q Consensus 383 tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e 462 (1017)
|||||||+|+||+||+|+.+++|++++++|||+|++ ||++||||+||||||||+|||++|+|||||+++++|+||++++
T Consensus 224 tAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~-VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~ 302 (877)
T COG0525 224 TAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEY-VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINE 302 (877)
T ss_pred eEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcc-cCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeecc
Confidence 999999999999999999999999999999999996 9999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceE
Q 001757 463 NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 542 (1017)
Q Consensus 463 ~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~ 542 (1017)
+++.+|+||+|++||++|++.|++.|++++.+++.|++|+|+|||+||||++++||||++..+++.+++++ ++|+++
T Consensus 303 ~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~---~~g~i~ 379 (877)
T COG0525 303 EAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAV---KDGKIK 379 (877)
T ss_pred CCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHH---hcCCce
Confidence 88549999999999999999999999999999999999999999999999999999999999999999999 888999
Q ss_pred EeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCcccccc
Q 001757 543 LIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQ 622 (1017)
Q Consensus 543 ~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1017)
|+|+++++++.+||++++|||||||||||||||+|||..| +.+++++.+.++... ...|+. ..++|
T Consensus 380 f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~-----------g~v~v~~~~~~~~~~-~~~~~~--~~~~q 445 (877)
T COG0525 380 FVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKEC-----------GNVVVAEEEPEDPAA-AEKCPK--EELEQ 445 (877)
T ss_pred EecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCC-----------CcEEeCCccccchhh-hccCch--hcccC
Confidence 9999999999999999999999999999999999999754 467888775544433 222332 56899
Q ss_pred CCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCcc
Q 001757 623 DPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRK 702 (1017)
Q Consensus 623 ~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~K 702 (1017)
|+||||||||||+|||+++|||+++++|++|||+|+++||+||||||++||+|+|+.++|++||++|++||+|+|++|+|
T Consensus 446 d~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~K 525 (877)
T COG0525 446 DEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRK 525 (877)
T ss_pred CcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHH
Q 001757 703 MSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQR 782 (1017)
Q Consensus 703 MSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~ 782 (1017)
||||+||||||+|+|+ +||||||||||++.+.+|+|++|+.++
T Consensus 526 MSKS~GNvIDP~d~I~-------------------------------------~yGaDAlRf~la~~~~~G~Di~~~~~~ 568 (877)
T COG0525 526 MSKSKGNVIDPLDVID-------------------------------------KYGADALRFTLASLASPGRDINFDEKR 568 (877)
T ss_pred CcccCCCcCCHHHHHH-------------------------------------HhChHHHHHHHHhccCCCcccCcCHHH
Confidence 9999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHh
Q 001757 783 VVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFC 862 (1017)
Q Consensus 783 v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~ 862 (1017)
++++|+|||||||+.||+++++.+ ..+... .....+.+||||+++|+++++.++++|++|+|..|.+++|+|+|++||
T Consensus 569 ~~~~rnF~nKlWNa~Rfv~~~~~~-~~~~~~-~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fc 646 (877)
T COG0525 569 VEGYRNFLNKLWNATRFVLMNLDD-LGPDDL-DLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFC 646 (877)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccc-cCcccc-cccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 999999999999999999998743 332211 112346899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCCC
Q 001757 863 DVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWT 942 (1017)
Q Consensus 863 ~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~ 942 (1017)
|+|||++|++++++ +. .+++++.||+++|+.+++||||||||+||||||+|+.. +|||+++||++++.+.
T Consensus 647 D~YlEl~K~~l~~~-~~---~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~------~si~~~~~P~~~~~~~ 716 (877)
T COG0525 647 DWYLELAKPRLYGG-EE---EKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT------ESIHLASWPEVDEELI 716 (877)
T ss_pred HHHHHHhhhhhcCc-HH---HHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC------CeEEeccCCCcchhhc
Confidence 99999999999987 44 67799999999999999999999999999999999862 7999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcceEEEEecCcchHHHHHHhHHHHHHhhccCcEEEec
Q 001757 943 DERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKRIS 1011 (1017)
Q Consensus 943 ~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~--~~~~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~v~~ 1011 (1017)
|+.++..++.+++++.+||++|+++ |++ .+.++++... .+..+.++.....|+.+.+++.+++..
T Consensus 717 d~~a~~~~~~l~~ii~~iR~~r~e~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~i~~~~ 783 (877)
T COG0525 717 DEEAEKEFELLKEIISAIRNLRAEM---NLSPSAPLKVVLVGS-EELEDRLEANEDDIKGLANLEELEILS 783 (877)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCceeEEEecc-HhHHHHHHHHHHHHHHhcCcceeeecc
Confidence 9999999999999999999999999 884 4555565554 566778888999999999999999886
No 4
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=3.2e-198 Score=1861.09 Aligned_cols=860 Identities=58% Similarity=1.005 Sum_probs=795.2
Q ss_pred ccccchhhhcCCCChhHHHHHHHHHHHcCCcccCC----CCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhC
Q 001757 136 KKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN----KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMS 211 (1017)
Q Consensus 136 k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~----~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~ 211 (1017)
||+++.++++.|||+.+|++||++|+++++|++.. ..++++|+|++|||||||.||||||+|++++|+++||+||+
T Consensus 17 ~~~~~~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~ 96 (995)
T PTZ00419 17 KKRNISSMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMK 96 (995)
T ss_pred hhhchhhcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 44577788999999999999999999999999862 34678999999999999999999999999999999999999
Q ss_pred CCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhh
Q 001757 212 GYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKR 291 (1017)
Q Consensus 212 G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y 291 (1017)
||+|+|+|||||||||||.+||+++.++.|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|
T Consensus 97 G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~ 176 (995)
T PTZ00419 97 GDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQR 176 (995)
T ss_pred CCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcc-eEE
Q 001757 292 SKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG-EIV 370 (1017)
Q Consensus 292 ~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~-~i~ 370 (1017)
+++|+++|++||++|||||+.++|||||.|+|+|||+||+|++..++++++||+|...+++|.+++++|++.+++. +|+
T Consensus 177 ~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~ 256 (995)
T PTZ00419 177 SKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIV 256 (995)
T ss_pred HHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987665 999
Q ss_pred EeeccccccccCcEEEEcCCCcccccccCCeeecCC-CCCccceEecC-ccccCCCCCCceecCCCCCcchHHHHHHhCC
Q 001757 371 VATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPF-NGRKIPIICDA-ILVDPKFGTGAVKITPAHDPNDFDVGKRHNL 448 (1017)
Q Consensus 371 v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~-~~~~ipIi~~~-~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L 448 (1017)
|||||||||+||+||||||+|+||++|+|++|.||+ .++.+|||+|+ + |++++|||+||+|||||++||++|++|||
T Consensus 257 vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L 335 (995)
T PTZ00419 257 VATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDEL-VDMEFGTGAVKITPAHDPNDYEIAKRHNL 335 (995)
T ss_pred EEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcc-cCCCcCCCCeEeCCCCChHHHHHHHHcCC
Confidence 999999999999999999999999999999999999 89999999999 7 99999999999999999999999999999
Q ss_pred ceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHH
Q 001757 449 EFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAME 528 (1017)
Q Consensus 449 ~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~ 528 (1017)
|++++||++|+|++++| +|.|+.+++||+.|++.|+++|++++.+++.|+||+|||||+||++++++||||+|++++++
T Consensus 336 ~~~~~i~~~G~~~~~~~-~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~ 414 (995)
T PTZ00419 336 PFINIFTLDGKINENGG-EFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKR 414 (995)
T ss_pred CeeeeeCCCceEcCCCc-ccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHH
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHH
Q 001757 529 ALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAV 608 (1017)
Q Consensus 529 al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 608 (1017)
+++++ ++++++|+|+.++++|.+||+|++|||||||||||||||+|||..|+.. ....+++.|+++.+.+++...
T Consensus 415 al~~v---~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 489 (995)
T PTZ00419 415 AVEAV---RNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPE--TDPSDEEPWVVARSEEEALEK 489 (995)
T ss_pred HHHHh---hcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCcc--ccCCCCceEEEcCCHHHHHhh
Confidence 99999 8889999999999999999999999999999999999999999876521 111234589988888777655
Q ss_pred Hhhhc--CCCccccccCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCc
Q 001757 609 ANKKF--SGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF 686 (1017)
Q Consensus 609 ~~~~~--~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pf 686 (1017)
+...+ +.++..++|++||||||||||+||++++|||+++.+|++|||+|++++|+||+||||+||+|+|+.++|++||
T Consensus 490 ~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pf 569 (995)
T PTZ00419 490 AKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPF 569 (995)
T ss_pred hccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCCh
Confidence 43333 2234579999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred eEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHH
Q 001757 687 TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFAL 766 (1017)
Q Consensus 687 k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L 766 (1017)
++|++||+|+|.+|+|||||+||||||.++|+|+++++|+.++..||+++.|+++|.++|+++||+|||+||||+|||||
T Consensus 570 k~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l 649 (995)
T PTZ00419 570 KTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGL 649 (995)
T ss_pred HHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC-----CCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 001757 767 VSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK-----LHPHNLPFSCKWILSVLNKAISRTASSL 841 (1017)
Q Consensus 767 ~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~-----~~~~~~~~~Drwil~~L~~~i~~v~~a~ 841 (1017)
+++++.++|++|+.+++.++++|||||||++||+++++.+...+... .....+..+|+||+++|+.+++.++++|
T Consensus 650 ~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~ 729 (995)
T PTZ00419 650 LAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGF 729 (995)
T ss_pred HhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887642211110 0112456789999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCC-CcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCC
Q 001757 842 NSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD-NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1017)
Q Consensus 842 e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~-~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~ 920 (1017)
++|+|+.|++.+++|++.++||+||+.+|+|++.. +.. .+++++.+|+.+|+.+++||||||||+|||||++|+..
T Consensus 730 e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~---~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~ 806 (995)
T PTZ00419 730 KEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGE---RKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNY 806 (995)
T ss_pred HccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcc
Confidence 99999999999999999999999999999998432 222 56789999999999999999999999999999999752
Q ss_pred CCCCCCCCeeecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcceEEEEecCcchHHHHHHhHHHH
Q 001757 921 KGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHELEI 998 (1017)
Q Consensus 921 ~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~--~~~~~~i~~~~~~~~~~l~~~~~~I 998 (1017)
. ...+||++++||.+++.|.|++++..++.++++++.+|++|+++ +++ .+..+++.+.++...+.++.+.+.|
T Consensus 807 ~--~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~~---~i~~~~~l~~~i~~~~~~~~~~~~~~~~~i 881 (995)
T PTZ00419 807 L--RKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATL---GIPNKTKPDCYVTAKDAELIELIESAENLI 881 (995)
T ss_pred C--CCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCceeEEEEeCCHHHHHHHHHHHHHH
Confidence 1 12369999999999988999999999999999999999999999 884 4445666666666678889999999
Q ss_pred HHhhccCcEEEe
Q 001757 999 VTLSTSSSLKRI 1010 (1017)
Q Consensus 999 ~~l~~v~~v~v~ 1010 (1017)
+.|+++++|+++
T Consensus 882 ~~l~~~~~v~~~ 893 (995)
T PTZ00419 882 STLAKIGSVSVI 893 (995)
T ss_pred HHhcCCCeeEEe
Confidence 999999999886
No 5
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-185 Score=1726.79 Aligned_cols=775 Identities=51% Similarity=0.920 Sum_probs=715.9
Q ss_pred hhhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccc
Q 001757 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1017)
Q Consensus 142 ~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1017)
+|++.|||+.+|++||++|+++|+|+++.+ .+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 4 ~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 82 (874)
T PRK05729 4 ELPKTYDPKEVEAKWYQKWEEKGYFKPDDN-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGT 82 (874)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcccCcC-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCC
Confidence 467899999999999999999999999775 3456999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001757 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1017)
Q Consensus 222 D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~ 301 (1017)
||||||||.+||+++.+ .|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+|||+.|+++|+++|++
T Consensus 83 D~~Gi~~e~~ve~~l~~-~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 161 (874)
T PRK05729 83 DHAGIATQMVVERQLAA-EGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVR 161 (874)
T ss_pred CccchhhHHHHHHHHHh-cCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999998854 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeecccccccc
Q 001757 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLG 381 (1017)
Q Consensus 302 L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g 381 (1017)
||++|||||+.++|||||.|+|+|||+||+|++.. |.+++++|++.+++.+|+|||||||||+|
T Consensus 162 L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~----------------~~~~~i~f~~~~~~~~l~vaTtrPeTl~~ 225 (874)
T PRK05729 162 LYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVK----------------GKLWHIRYPLADGSDYLVVATTRPETMLG 225 (874)
T ss_pred HHHCCCEeecCcccccCCCCCCcchhhhccccccc----------------ceEEEEEEEecCCCcEEEEEeCCcchhhc
Confidence 99999999999999999999999999999998866 56788999999888999999999999999
Q ss_pred CcEEEEcCCCcccccccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccc
Q 001757 382 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 461 (1017)
Q Consensus 382 ~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~ 461 (1017)
|+||||||+|+||++|+|++++||++++.+|||+|++ |++++|||+||+|||||++||++|++|||+++++||++|+|+
T Consensus 226 ~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~ 304 (874)
T PRK05729 226 DTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEY-VDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTIN 304 (874)
T ss_pred CeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCcc-CCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEc
Confidence 9999999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCce
Q 001757 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1017)
Q Consensus 462 e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i 541 (1017)
+++| +|+||+|++||+.|++.|++.|++++.+++.|++|+|||||++|++++++||||+|+++++++++++ +++++
T Consensus 305 ~~~~-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v---~~~~i 380 (874)
T PRK05729 305 ENPG-EYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAV---ENGEI 380 (874)
T ss_pred CCCc-ccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHH---hcCCc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 88899
Q ss_pred EEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccc
Q 001757 542 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 621 (1017)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1017)
+|+|+++++++.+||+|++|||||||||||||||+|+|.. +.+.++....++ ++ ...++
T Consensus 381 ~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~------------~~~~v~~~~~~~-------~~--~~~~~ 439 (874)
T PRK05729 381 KFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED------------GEVYVGREEPEA-------RE--KALLT 439 (874)
T ss_pred EEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC------------CcEEeCCccccc-------cc--ccCeE
Confidence 9999999999999999999999999999999999999853 124444332211 11 12489
Q ss_pred cCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCc
Q 001757 622 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR 701 (1017)
Q Consensus 622 ~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~ 701 (1017)
|++||||||||||+||++++|||+++.+|++|||+|++++|+||+|||++||+++|+.++|++||++|++||+|+|.+|+
T Consensus 440 ~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~ 519 (874)
T PRK05729 440 QDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGR 519 (874)
T ss_pred eCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHH
Q 001757 702 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 781 (1017)
Q Consensus 702 KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~ 781 (1017)
|||||+||||||.|+|+ +||+|+|||||++.++.++|++|+.+
T Consensus 520 KMSKSlGNvIdP~dvi~-------------------------------------~yGaDalR~~ll~~~~~~~Di~fs~~ 562 (874)
T PRK05729 520 KMSKSKGNVIDPLDLID-------------------------------------KYGADALRFTLAALASPGRDIRFDEE 562 (874)
T ss_pred CcccCCCCCCCHHHHHH-------------------------------------HhChHHHHHHHHhCCCCCCCceeCHH
Confidence 99999999999999999 89999999999998889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhH
Q 001757 782 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 861 (1017)
Q Consensus 782 ~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l 861 (1017)
.+.++++|+|||||++||+++++.+ +.+........++..|+||+++|+.+++.++++|++|+|+.|++.+++|+++++
T Consensus 563 ~l~~~~~~~nkl~N~~Rf~~~~~~~-~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~ 641 (874)
T PRK05729 563 RVEGYRNFANKLWNASRFVLMNLEG-ADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEF 641 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654 222111112245788999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCC
Q 001757 862 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 941 (1017)
Q Consensus 862 ~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~ 941 (1017)
||+|||.+|||++ + . .++.++.+|+.+|+.+++||||||||+||||||+|+.. ...+||++++||++++.+
T Consensus 642 ~~~Yle~~k~~l~-~--~---~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~---~~~~si~~~~~P~~~~~~ 712 (874)
T PRK05729 642 CDWYLELAKPVLQ-E--A---AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPL---GIEESIMLAPWPEADEAI 712 (874)
T ss_pred HHHHHHHHHHHhh-h--h---HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccC---CCCCceeecCCCCCCccc
Confidence 9999999999987 2 2 36688999999999999999999999999999999853 123589999999999888
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cceEEEEecCcchHHHHHHhHHHHHHhhccCcEEEec
Q 001757 942 TDERAEFEMDLVESTVRCIRSLRAEVLGKQKNE--RLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKRIS 1011 (1017)
Q Consensus 942 ~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~~--~~~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~v~~ 1011 (1017)
|+.++..++.++++++++|++|+++ +|+. +..+++.+.+....+.++.+.+.|+.|+++++|+++.
T Consensus 713 -~~~~~~~~~~~~~ii~~ir~~r~~~---~i~~~~~~~~~i~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~~ 780 (874)
T PRK05729 713 -DEAAEAEFEWLKELITAIRNIRAEM---NIPPSKKLPLLLKGADAEDRARLEANEAYIKRLARLESLEILA 780 (874)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHhCcCceEEec
Confidence 9999999999999999999999998 8844 4455666666666678899999999999999999864
No 6
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-181 Score=1693.50 Aligned_cols=780 Identities=46% Similarity=0.836 Sum_probs=711.7
Q ss_pred hhhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccc
Q 001757 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1017)
Q Consensus 142 ~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1017)
+|++.|||+. |++||++|+++|+|++..+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 56 ~~~~~y~~~~-E~~~~~~W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 134 (958)
T PLN02943 56 ETAKSFDFTS-EERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGT 134 (958)
T ss_pred ccCCCCChhh-hHHHHHHHHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCC
Confidence 3678899999 999999999999999987666788999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001757 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1017)
Q Consensus 222 D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~ 301 (1017)
||||||||.+||+++ ++.|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+++|++
T Consensus 135 D~~Gl~~e~~vek~l-~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~ 213 (958)
T PLN02943 135 DHAGIATQLVVEKML-ASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVR 213 (958)
T ss_pred CcccchhHHHHHHHH-HHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 999999999999988 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCc-ceEEEeeccccccc
Q 001757 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL-GEIVVATTRVETML 380 (1017)
Q Consensus 302 L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~-~~i~v~TTrPeTl~ 380 (1017)
||++|||||+.++|||||.|+|+|||+||+|++.. |.+++++|++.+++ .+|+|||||||||+
T Consensus 214 l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~----------------~~~~~i~f~l~~~~~~~l~vaTTrPeTl~ 277 (958)
T PLN02943 214 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGGSEDFLTIATTRPETLF 277 (958)
T ss_pred HHHCCCEEecCceeccCCCCCCCcCHHHhhccccc----------------ccEEEEEEEEcCCCCCEEEEEeCChhhhh
Confidence 99999999999999999999999999999998865 45678999997654 68999999999999
Q ss_pred cCcEEEEcCCCcccccccCCeeecCCC-CCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCc
Q 001757 381 GDTAIAIHPEDARYSHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGK 459 (1017)
Q Consensus 381 g~tavaV~P~d~ry~~L~G~~~~~P~~-~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~ 459 (1017)
||+||||||+|+||++|+|++++||++ ++.+|||+|++ |+++||||+||+|||||++||++|++|||+++++||++|+
T Consensus 278 ~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~ 356 (958)
T PLN02943 278 GDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRY-VDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 356 (958)
T ss_pred cceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCc-ccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCce
Confidence 999999999999999999999999996 99999999995 9999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCC
Q 001757 460 INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1017)
Q Consensus 460 ~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~ 539 (1017)
|++++| +.|++||+.|++.|+++|++++.+++.|++|+|||||+||++++++||||+|+++++++++++ +++
T Consensus 357 ~~~~~g-----~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v---~~~ 428 (958)
T PLN02943 357 LNEVAG-----LYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAV---ENG 428 (958)
T ss_pred eeccCC-----ccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHH---hcC
Confidence 997665 449999999999999999999999999999999999999999999999999999999999999 778
Q ss_pred ceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccc
Q 001757 540 KLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFE 619 (1017)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 619 (1017)
+++|+|+.+++++.+||+|++|||||||||||||||+|+|...+ ....|+++.+.+++...+..+|+. ...
T Consensus 429 ~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~g~-~~~ 499 (958)
T PLN02943 429 ELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKD--------CEEDYIVARSAEEALEKAREKYGK-DVE 499 (958)
T ss_pred CcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccC--------CCceEEecCcHHHHHHHhhhhcCC-chh
Confidence 99999999999999999999999999999999999999984211 012588888888887766656543 335
Q ss_pred cccCCCcEEEEeccCccccccccCCCC-ChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCC
Q 001757 620 MCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDA 698 (1017)
Q Consensus 620 ~~~~~dVlDtWFdSgl~p~s~lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~ 698 (1017)
++|++||||||||||+||++++|||+. +++|++|||+|++++|+||+|||+++|+++|+.++|++||++|++||+|+|.
T Consensus 500 ~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~ 579 (958)
T PLN02943 500 IYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDS 579 (958)
T ss_pred eeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECC
Confidence 889999999999999999999999984 5789999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001757 699 HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1017)
Q Consensus 699 ~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1017)
+|+|||||+||||+|.++|+ +||+|++||||++.. .++|++|
T Consensus 580 ~G~KMSKS~GN~i~p~~~i~-------------------------------------~ygaDalR~~l~~~~-~~~d~~f 621 (958)
T PLN02943 580 QGRKMSKTLGNVIDPLDTIK-------------------------------------EFGTDALRFTLALGT-AGQDLNL 621 (958)
T ss_pred CCCcccCcCCCCCCHHHHHH-------------------------------------hcCChHHHHHHHhCC-CCCCccc
Confidence 99999999999999999999 899999999999755 5899999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhCCC-------------CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCC
Q 001757 779 DIQRVVGYRQWCNKLWNAVRFSMSKLGEG-------------FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYE 845 (1017)
Q Consensus 779 ~~~~v~~~r~f~nkl~N~~rf~l~~l~~~-------------~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~ 845 (1017)
+.+.+.+.++|+|||||++||+++++.+. |.+. .....++..|+||+++|+.++++++++|++|+
T Consensus 622 s~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~ 699 (958)
T PLN02943 622 STERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKE--ESLLSLPLPECWVVSKLHELIDSVTTSYDKYF 699 (958)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCcc--ccccccCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999876431 2111 01124568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCC
Q 001757 846 FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCAT 925 (1017)
Q Consensus 846 f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~ 925 (1017)
|+.|++.+|+|+|+++||+|||.+||+++.++.. ..+++++.+|+.+++.+++||||||||+|||||++|+..
T Consensus 700 f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~--~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~----- 772 (958)
T PLN02943 700 FGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN--SALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR----- 772 (958)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccHhhccCCch--HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC-----
Confidence 9999999999998999999999999998865321 146788999999999999999999999999999999742
Q ss_pred CCCeeecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCcceEEEEecCcchHHHHHHhHHHHHHhhc
Q 001757 926 KESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQK--NERLPAIAFCQTKGVSEIIRSHELEIVTLST 1003 (1017)
Q Consensus 926 ~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i--~~~~~~~i~~~~~~~~~~l~~~~~~I~~l~~ 1003 (1017)
.+||+.++||+.+ .+.|+.+++.++.++++++++|++|+++ ++ +.+..+++.+.+ +..+.++.+.+.|+.|++
T Consensus 773 ~~si~~~~wP~~~-~~~d~~~~~~~~~v~~ii~~iR~~r~~~---~i~~~~~~~~~i~~~~-~~~~~~~~~~~~i~~l~~ 847 (958)
T PLN02943 773 KEALIVSPWPQTS-LPKDLKSIKRFENLQSLTRAIRNARAEY---SVEPAKRISASIVASA-EVIEYISKEKEVLALLSR 847 (958)
T ss_pred CCceeecCCCCCc-ccCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCcccEEEecCh-hHHHHHHHHHHHHHHHhc
Confidence 3599999999986 5778889999999999999999999999 77 455567776655 446778888999999987
Q ss_pred cC--cEEE
Q 001757 1004 SS--SLKR 1009 (1017)
Q Consensus 1004 v~--~v~v 1009 (1017)
++ +|++
T Consensus 848 ~~~~~~~~ 855 (958)
T PLN02943 848 LDLQNVHF 855 (958)
T ss_pred Cccccccc
Confidence 64 6655
No 7
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.7e-181 Score=1691.94 Aligned_cols=784 Identities=51% Similarity=0.888 Sum_probs=722.9
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccC
Q 001757 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1017)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D 222 (1017)
|++.|||+++|++||++|+++|+|++..+.++++|+|++|||||||.||||||+|++++|+++||+||+|++|+|+||||
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D 80 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTD 80 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcC
Confidence 46789999999999999999999999876677899999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001757 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1017)
Q Consensus 223 ~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L 302 (1017)
|||||||.+||+++. ..|++++++|||+|+++||+|+++|++.|++||++||+|+||+|+|+||||.|+++|+|+|.+|
T Consensus 81 ~~Glp~e~~vek~~~-~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 159 (861)
T TIGR00422 81 HAGIATQVKVEKKLG-AEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRL 159 (861)
T ss_pred cCCCcHHHHHHHHhc-ccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999999999884 4588999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCc-ceEEEeecccccccc
Q 001757 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL-GEIVVATTRVETMLG 381 (1017)
Q Consensus 303 ~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~-~~i~v~TTrPeTl~g 381 (1017)
|++|||||+.++|+|||.|+|+|||+||+|+++. |.+++++|++.+++ .+|+|||||||||+|
T Consensus 160 ~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~----------------~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~ 223 (861)
T TIGR00422 160 YEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVK----------------GKLYYIRYPLANGSKDYLVVATTRPETMFG 223 (861)
T ss_pred HHCCCeeecCcccccCCCCCCcchHhHhhccccc----------------ceEEEEEEEecCCCCCEEEEEeCCcchhhh
Confidence 9999999999999999999999999999998876 45778999997765 799999999999999
Q ss_pred CcEEEEcCCCcccccccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccc
Q 001757 382 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 461 (1017)
Q Consensus 382 ~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~ 461 (1017)
|+||||||+|+||++|+|+++.||++++++|||+|++ |++++|||+||+|||||++||++|++|||+++++||++|+++
T Consensus 224 ~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~ 302 (861)
T TIGR00422 224 DTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEY-VDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLN 302 (861)
T ss_pred CeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCC-CCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEc
Confidence 9999999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCce
Q 001757 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1017)
Q Consensus 462 e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i 541 (1017)
++|| .|+||++++||+.|++.|+++|++++.+++.|++|+|||||++|++++++||||+|+++++++++++ +++++
T Consensus 303 ~~~~-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~---~~~~i 378 (861)
T TIGR00422 303 ENAG-KYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAA---EEGEI 378 (861)
T ss_pred CCCc-ccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHh---hcCCe
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 77789
Q ss_pred EEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccc
Q 001757 542 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 621 (1017)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1017)
+|+|++.++++.+||++++|||||||||||||||+|+|..++ .+.++.+..++...+ .++ ....++
T Consensus 379 ~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~-----------~~~v~~~~~~~~~~~--~~~-~~~~~~ 444 (861)
T TIGR00422 379 KFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECG-----------EVYVAKEEPLPDDKT--NTG-PSVELE 444 (861)
T ss_pred EEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCC-----------cEEeccchHHhhhhh--ccC-CcccEE
Confidence 999999999999999999999999999999999999996552 344555555444332 222 224699
Q ss_pred cCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCc
Q 001757 622 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR 701 (1017)
Q Consensus 622 ~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~ 701 (1017)
|++||||||||||+||++++|||+++.+|++|||+|++++|+||+|||+++|++++++++|+.||++|++||+|+|.+|+
T Consensus 445 ~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~ 524 (861)
T TIGR00422 445 QDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGR 524 (861)
T ss_pred ECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCC
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHH
Q 001757 702 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 781 (1017)
Q Consensus 702 KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~ 781 (1017)
|||||+||+|+|.++|+ +||+|+|||||++.++.++|++|+.+
T Consensus 525 KMSKS~GN~i~p~~~i~-------------------------------------~ygaDalR~~l~~~~~~~~d~~f~~~ 567 (861)
T TIGR00422 525 KMSKSLGNVIDPLDVIE-------------------------------------KYGADALRFTLASLVTPGDDINFDWK 567 (861)
T ss_pred CCCcCCCCCCCHHHHHH-------------------------------------HhChHHHHHHHHhCCCCCCCceecHH
Confidence 99999999999999999 89999999999999888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhH
Q 001757 782 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 861 (1017)
Q Consensus 782 ~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l 861 (1017)
.+.++++|+|||||+.||+.+++.. +.. ........+..|+||+++|+.+++.++++|++|+|+.|++.+++|+|+++
T Consensus 568 ~~~~~~~~~nkl~N~~rf~~~~~~~-~~~-~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~ 645 (861)
T TIGR00422 568 RVESARNFLNKLWNASRFVLMNLSD-DLE-LSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDF 645 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-ccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876543 210 00001235678999999999999999999999999999999999988999
Q ss_pred hHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCC
Q 001757 862 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 941 (1017)
Q Consensus 862 ~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~ 941 (1017)
||+||+.+|||++.++.. +++.++.+|+.+|+.+++||||||||+|||||++|+.. .+||++++||.+++.+
T Consensus 646 ~n~Yie~~k~~~~~~~~~---~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~-----~~si~~~~~P~~~~~~ 717 (861)
T TIGR00422 646 CDWYIELVKYRLYNGNEA---EKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG-----ADSIMLQSYPVVDAEF 717 (861)
T ss_pred HHHHHHHhHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc-----CCceeecCCCCccccc
Confidence 999999999998765433 57789999999999999999999999999999999752 3699999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cceEEEEecCcchHHHHHHhHHHHHHhhccCcEEEecc
Q 001757 942 TDERAEFEMDLVESTVRCIRSLRAEVLGKQKNE--RLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKRISV 1012 (1017)
Q Consensus 942 ~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~~--~~~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~v~~~ 1012 (1017)
.|++++..|+.++++++.+|++|+++ +++. +.++++.+.+....+.++.+.+.|+.|+++++|+++..
T Consensus 718 ~d~~~e~~~~~l~~ii~~iR~~r~~~---~i~~~~~l~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~~~~~ 787 (861)
T TIGR00422 718 VDEEAEKAFELLKEIIVSIRNLKAES---NIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFSEVEVVIE 787 (861)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCcceEEEEeCCHHHHHHHHHHHHHHhhhcCCCceEeecc
Confidence 99999999999999999999999999 8854 44566656555566788999999999999999988653
No 8
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4e-181 Score=1699.73 Aligned_cols=788 Identities=50% Similarity=0.912 Sum_probs=719.8
Q ss_pred chhhhcCCCChhHHHHHHHHHHHcCCcccCC-CCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeee
Q 001757 140 SKQMAKEYNPSSVEKSWYSWWENSGYFIADN-KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 218 (1017)
Q Consensus 140 ~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~-~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~ 218 (1017)
...+++.|||..||.+||++|+++++|++.. ..++++|+|++||||+||.|||||++|++++|+++||+||+||+|+|+
T Consensus 12 ~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~ 91 (1052)
T PRK14900 12 RTELAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWL 91 (1052)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCC
Confidence 3457789999999999999999999999864 356789999999999999999999999999999999999999999999
Q ss_pred cccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q 001757 219 PGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEA 298 (1017)
Q Consensus 219 pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~ 298 (1017)
|||||||||||.+||+.+....|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+|+
T Consensus 92 ~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 171 (1052)
T PRK14900 92 PGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREV 171 (1052)
T ss_pred CCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHH
Confidence 99999999999999999877789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccc
Q 001757 299 FVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVET 378 (1017)
Q Consensus 299 F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeT 378 (1017)
|.+||++|||||+.++|+|||.|+|+|||+||+|+++.. |.+++++|++.+++.+|+||||||||
T Consensus 172 F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~---------------~~~~~i~f~l~~~~~~l~vaTTrPeT 236 (1052)
T PRK14900 172 FVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQ---------------GELWSFAYPLADGSGEIVVATTRPET 236 (1052)
T ss_pred HHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCC---------------CeEEEEEEEecCCCcEEEEEECchhh
Confidence 999999999999999999999999999999999986443 56778999998887899999999999
Q ss_pred cccCcEEEEcCCCcccccccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCC
Q 001757 379 MLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDG 458 (1017)
Q Consensus 379 l~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G 458 (1017)
|+||+||||||+|+||++|+|++|.||+.++.+|||.|..+|++++|||+||+|||||++||++|++|||+++++||++|
T Consensus 237 l~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G 316 (1052)
T PRK14900 237 MLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDG 316 (1052)
T ss_pred hhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCc
Confidence 99999999999999999999999999999999999977546999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCC
Q 001757 459 KINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDK 538 (1017)
Q Consensus 459 ~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~ 538 (1017)
+|++++| +|.|+.+++||+.|++.|+++|++++.+++.|+||||||||+||++++++||||+|+++++++++++ ++
T Consensus 317 ~~~~~~~-~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v---~~ 392 (1052)
T PRK14900 317 RMTAEAG-PLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAV---EQ 392 (1052)
T ss_pred EEecCCc-ccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHH---hc
Confidence 9999988 8999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCC-c
Q 001757 539 KKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGK-K 617 (1017)
Q Consensus 539 ~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~ 617 (1017)
++++|+|++.++++.+||++++|||||||||||||||+|+|.. +.|+++.... ..||.| +
T Consensus 393 ~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~------------~~~~v~~~~~-------~~~~~~~~ 453 (1052)
T PRK14900 393 GRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD------------GHVTVARETP-------EACSTCGK 453 (1052)
T ss_pred CCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC------------CcEEeccccc-------ccccccCc
Confidence 7899999999999999999999999999999999999999852 2355544321 123322 2
Q ss_pred cccccCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeC
Q 001757 618 FEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRD 697 (1017)
Q Consensus 618 ~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D 697 (1017)
..++|++||||||||||+||++++|||+++.+|++|||+|++++|+||+|||+++|+++|+.++|.+||++|++||||+|
T Consensus 454 ~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d 533 (1052)
T PRK14900 454 AELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRD 533 (1052)
T ss_pred cceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEEC
Confidence 35889999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCcccc
Q 001757 698 AHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKIN 777 (1017)
Q Consensus 698 ~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Din 777 (1017)
.+|+|||||+||||||.++|+ +||+|+|||||++.++.++|++
T Consensus 534 ~~G~KMSKSkGNvIdP~dvIe-------------------------------------~yGaDalR~~L~~~~~~g~D~~ 576 (1052)
T PRK14900 534 EKGQKMSKTKGNVIDPLVITE-------------------------------------QYGADALRFTLAALTAQGRDIK 576 (1052)
T ss_pred CCCCCccCCCCCCCCHHHHHH-------------------------------------HhCcHHHHHHHHhcCCCCCCCc
Confidence 999999999999999999999 8999999999999989999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCC-CCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 001757 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLH-PHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSW 856 (1017)
Q Consensus 778 f~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~-~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f 856 (1017)
|+.+.++++++|+|+|||+.||+++++.+ |.+..... ...++..|+||+++|+.++.++.++|++|+|+.|++.+++|
T Consensus 577 fs~~~l~~~~~f~nkl~N~~R~~~~~~~~-~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f 655 (1052)
T PRK14900 577 LAKERIEGYRAFANKLWNASRFALMNLSG-YQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAF 655 (1052)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999877643 53322111 12356789999999999999999999999999999999999
Q ss_pred HHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCC-CCCCCeeecCCC
Q 001757 857 WQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC-ATKESIMLCEYP 935 (1017)
Q Consensus 857 ~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~-~~~~SI~~~~~P 935 (1017)
+++++||+||+.+|+++++++.. .++.++.+|+.+|+.+++||||||||+|||||++|+...+. ...+||++++||
T Consensus 656 ~~~~~~n~Yie~~k~~l~~~~~~---~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP 732 (1052)
T PRK14900 656 VWHELCDWYIELAKEALASEDPE---ARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYP 732 (1052)
T ss_pred HHHhhhHHHHHhccHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCC
Confidence 99999999999999998876443 56678999999999999999999999999999999753110 113699999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc------eEEEEecCcchHHHHHH-hHHHHHHhhccCcEE
Q 001757 936 SAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERL------PAIAFCQTKGVSEIIRS-HELEIVTLSTSSSLK 1008 (1017)
Q Consensus 936 ~~~~~~~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~~~~------~~~i~~~~~~~~~~l~~-~~~~I~~l~~v~~v~ 1008 (1017)
.+++ .|+.++..|+.+++++..||++|+++ +|+.+. .++|.+.++...+.++. +...|+.|+++++|+
T Consensus 733 ~~~~--~d~~~e~~~~~v~~ii~~iR~~R~~~---~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~~i~~l~~~~~v~ 807 (1052)
T PRK14900 733 RKGE--ADEAAEAAFRPVLGIIDAVRNIRGEM---GIPWKVKLGAQAPVEIAVADPALRDLLQAGELARVHRVAGVEGSR 807 (1052)
T ss_pred CCCc--ccHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCccCCCCeEEEEcCCHHHHHHHHHHHHHHHHHhhCCCeeE
Confidence 9886 68889999999999999999999999 885433 45666667666777888 889999999999998
Q ss_pred Eec
Q 001757 1009 RIS 1011 (1017)
Q Consensus 1009 v~~ 1011 (1017)
++.
T Consensus 808 ~~~ 810 (1052)
T PRK14900 808 LVV 810 (1052)
T ss_pred eec
Confidence 864
No 9
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=5.2e-179 Score=1678.27 Aligned_cols=810 Identities=21% Similarity=0.350 Sum_probs=709.1
Q ss_pred hhhhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeee
Q 001757 141 KQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 218 (1017)
Q Consensus 141 ~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~ 218 (1017)
.+++..|||.++|++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+
T Consensus 66 ~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~ 145 (1205)
T PTZ00427 66 TGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERK 145 (1205)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccC
Confidence 4566779999999999999999999999765 45678999999999999999999999999999999999999999999
Q ss_pred cccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q 001757 219 PGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEA 298 (1017)
Q Consensus 219 pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~ 298 (1017)
|||||||||||.+|||+++........++|+++|+++|++|+.+|++.|++||+|||+|+||+++|+||||.|+++|+|+
T Consensus 146 ~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~ 225 (1205)
T PTZ00427 146 FGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWV 225 (1205)
T ss_pred CccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHH
Confidence 99999999999999998754333344579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcEEEcceeeeecCCCCcccccccc--ccccCCCcee-EeccCc-------------cccceeeeeeeEeeec
Q 001757 299 FVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREM-RNVPGY-------------EKQVEFGVLTSFAYPL 362 (1017)
Q Consensus 299 F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EV--e~~~~~~~t~-~~vp~y-------------~~~~e~g~l~~~~~~l 362 (1017)
|.+||++|||||+.++|+|||.|+|+|||+|| +|+++.++++ ++||.- ..+.++|.++++.|++
T Consensus 226 f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~ 305 (1205)
T PTZ00427 226 FSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNN 305 (1205)
T ss_pred HHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeecccc
Confidence 99999999999999999999999999999999 7999999875 566543 3355678888888876
Q ss_pred C-----------------CCcceEEEeeccccccccCcEEEEcCCCc--cc-----------------------------
Q 001757 363 E-----------------GGLGEIVVATTRVETMLGDTAIAIHPEDA--RY----------------------------- 394 (1017)
Q Consensus 363 ~-----------------~~~~~i~v~TTrPeTl~g~tavaV~P~d~--ry----------------------------- 394 (1017)
. .++.+++||||||||||||+||||||+++ +|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 385 (1205)
T PTZ00427 306 KRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVED 385 (1205)
T ss_pred ccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccc
Confidence 2 12468999999999999999999999965 22
Q ss_pred ---------ccccCCeeecCC---------CCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCC------ce
Q 001757 395 ---------SHLHGKFAIHPF---------NGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL------EF 450 (1017)
Q Consensus 395 ---------~~L~G~~~~~P~---------~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L------~~ 450 (1017)
++|+|.+|.||| .++.+|||+|++ |++++|||+||+|||||++||++|++||| ++
T Consensus 386 ~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~-V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~ 464 (1205)
T PTZ00427 386 LKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDF-VTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIF 464 (1205)
T ss_pred cEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCc-cCCCCCceeeEecCCCChhHHHHHHHcCCCCcccccc
Confidence 246688888887 267899999995 99999999999999999999999999999 27
Q ss_pred eeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHH
Q 001757 451 INIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEAL 530 (1017)
Q Consensus 451 i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al 530 (1017)
+++||++|+|++++| +|+||.+++||+.|++.|+++|++++.+++.|+||+|||||+||++++++||||++++++++++
T Consensus 465 ~~~vd~~G~~~~~~~-~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l 543 (1205)
T PTZ00427 465 IDPLDANGYFTNEVE-EVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELV 543 (1205)
T ss_pred ccccCCCceecCCCc-ccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHH
Confidence 899999999999988 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCceEEecccc-HHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHH
Q 001757 531 YAVMDDDKKKLELIPRQY-TAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVA 609 (1017)
Q Consensus 531 ~~v~~~~~~~i~~~P~~~-~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 609 (1017)
+++ ++++|+|+++ +++|.+||+|++|||||||||||||||+|+|..++ .+++..+.+++....
T Consensus 544 ~~~-----~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~-----------~~~~i~s~~el~~~~ 607 (1205)
T PTZ00427 544 KNN-----ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKME-----------TVICVESIKHLEELS 607 (1205)
T ss_pred HcC-----CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCC-----------eEeccCCHHHHHHHh
Confidence 876 7999999999 69999999999999999999999999999996542 222222333222111
Q ss_pred h----------------hhcCC-C-ccccccCCCcEEEEeccCccccccccCCC--CChhhhhhCCccccceeecccchH
Q 001757 610 N----------------KKFSG-K-KFEMCQDPDVLDTWFSSGLFPLSVLGWPD--DTDDLKAFYPTSVLETGHDILFFW 669 (1017)
Q Consensus 610 ~----------------~~~~~-~-~~~~~~~~dVlDtWFdSgl~p~s~lg~p~--~~~d~~~~~P~dl~~~G~Dil~fW 669 (1017)
. -.||. + ...++|++||||||||||+||++++|||. ++++|+++||+|++++|+||+|||
T Consensus 608 ~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 608 GVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGW 687 (1205)
T ss_pred ccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccH
Confidence 1 11221 1 12599999999999999999999999998 467899999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCC
Q 001757 670 VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKAD 749 (1017)
Q Consensus 670 ~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~ 749 (1017)
|++|+++|++++|++||++|++||||+|++|+|||||+||||||.++|+
T Consensus 688 f~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~------------------------------- 736 (1205)
T PTZ00427 688 FYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILD------------------------------- 736 (1205)
T ss_pred HHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHhccC-CCccccccHHHH-HHHHHHHHHHHHHHHHHHhhhCC-------CCCCCCCCCCCCCC
Q 001757 750 FPNGIPECGTDALRFALVSYTA-QSDKINLDIQRV-VGYRQWCNKLWNAVRFSMSKLGE-------GFVPPLKLHPHNLP 820 (1017)
Q Consensus 750 ~p~~i~~~GaDaLR~~L~~~~~-~~~Dinf~~~~v-~~~r~f~nkl~N~~rf~l~~l~~-------~~~p~~~~~~~~~~ 820 (1017)
+||||+|||||++.+. .++|++|+.+.+ +.+++|++++||+++|+++++.+ +|.+.........+
T Consensus 737 ------kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~ 810 (1205)
T PTZ00427 737 ------KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDN 810 (1205)
T ss_pred ------hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCC
Confidence 8999999999998766 478999999998 47999999999999999987642 22211100012356
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCC-cchHHHHHHHHHHHHHHHHHHH
Q 001757 821 FSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDN-PAFASERSAAQHVLWVCLETGL 899 (1017)
Q Consensus 821 ~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~-~~~~~~r~~a~~~L~~~l~~~l 899 (1017)
.+|+||+++|+.+++.|+++|++|+|+.|++.|++|+ .++|||||+.+|++++.+. .. ++.+++.||+++|..++
T Consensus 811 ~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi-~~lsnwYIe~~K~rl~~~~~~~---~~~~a~~tL~~vL~~~~ 886 (1205)
T PTZ00427 811 IMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFI-ENLTNWYIRLNRDRMRGSLGEE---NCLQSLCTTYRTLHLFT 886 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHhccHHHHHcchhhccCCCcH---HHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999998 4699999999999998652 32 56789999999999999
Q ss_pred HHhhchhhHHHHHHHHhCCCCCCC--------------------CCCCCeeecCCCCCCCCC-CChHHHHHHHHHHHHHH
Q 001757 900 RLLHPFMPFVTEELWQRLPQPKGC--------------------ATKESIMLCEYPSAVEGW-TDERAEFEMDLVESTVR 958 (1017)
Q Consensus 900 ~LL~PfmPfitEelwq~L~~~~~~--------------------~~~~SI~~~~~P~~~~~~-~~~~~e~~~~~v~~i~~ 958 (1017)
+||||||||+||+|||+|+..... ...+|||++.||++++.+ +|+++++.|+.+++++.
T Consensus 887 ~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii~ 966 (1205)
T PTZ00427 887 VLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDVIL 966 (1205)
T ss_pred HHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999742100 013699999999999886 79999999999999999
Q ss_pred HHHHHHHHhccCCCCCcceE---EEEecCcchHHHHHHhHHHHHHhhccCcEEEecc
Q 001757 959 CIRSLRAEVLGKQKNERLPA---IAFCQTKGVSEIIRSHELEIVTLSTSSSLKRISV 1012 (1017)
Q Consensus 959 ~iRslr~~~~~k~i~~~~~~---~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~v~~~ 1012 (1017)
.+|++|++. +++.+.++ .|...++...+.++.+.+.|+.++|+.+|++...
T Consensus 967 ~~R~~R~~~---~i~~r~pl~~~~v~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~~ 1020 (1205)
T PTZ00427 967 LGRVLRERR---KVASKKPLKSITILHPNESYFKNFDQISNYIKEELNVLNVECSND 1020 (1205)
T ss_pred HHHHHHHHc---CCCCCCccceeEEecCcHHHHHHHHHHHHHHHHhhCcceEEEEec
Confidence 999999999 88666554 3445555566778888999999999999998754
No 10
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.2e-176 Score=1651.00 Aligned_cols=785 Identities=28% Similarity=0.438 Sum_probs=703.2
Q ss_pred hhhhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeee
Q 001757 141 KQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 218 (1017)
Q Consensus 141 ~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~ 218 (1017)
.++++.|||.++|++|+++|+++++|++..+ +++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+
T Consensus 5 ~~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~ 84 (975)
T PRK06039 5 PEVDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERR 84 (975)
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCc
Confidence 3467889999999999999999999998764 56789999999999999999999999999999999999999999999
Q ss_pred cccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q 001757 219 PGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEA 298 (1017)
Q Consensus 219 pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~ 298 (1017)
|||||||||||.+|||+++.......+++|+++|+++|++|+.+|++.|++||+|||+|+||+|+|+||||.|+++|+|+
T Consensus 85 ~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~ 164 (975)
T PRK06039 85 AGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWA 164 (975)
T ss_pred CCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHH
Confidence 99999999999999998743333455689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcEEEcceeeeecCCCCccccccccc--cccCCCceeEeccCccccceeeeeeeEeeecCC-CcceEEEeecc
Q 001757 299 FVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD--YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEG-GLGEIVVATTR 375 (1017)
Q Consensus 299 F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe--~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~-~~~~i~v~TTr 375 (1017)
|.+||++|||||+.++|||||.|+|+|||+||+ |+++.++ .++++|++.+ ++.+|+|||||
T Consensus 165 F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~----------------~~~v~f~l~~~~~~~l~i~TTr 228 (975)
T PRK06039 165 LKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDP----------------SVYVKFKLKGEENEYLLAWTTT 228 (975)
T ss_pred HHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCc----------------eEEEEEEecCCCCCEEEEEECC
Confidence 999999999999999999999999999999999 8887754 4568899864 56799999999
Q ss_pred ccccccCcEEEEcCCC---------ccc-----------------------ccccCCeeecCCC---C--CccceEecCc
Q 001757 376 VETMLGDTAIAIHPED---------ARY-----------------------SHLHGKFAIHPFN---G--RKIPIICDAI 418 (1017)
Q Consensus 376 PeTl~g~tavaV~P~d---------~ry-----------------------~~L~G~~~~~P~~---~--~~ipIi~~~~ 418 (1017)
||||+||+||||||++ ++| ++|+|++|.|||. + +.+||+++++
T Consensus 229 P~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~ 308 (975)
T PRK06039 229 PWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADF 308 (975)
T ss_pred ccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCc
Confidence 9999999999999998 576 7899999999997 3 4799999995
Q ss_pred cccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccc
Q 001757 419 LVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEM 498 (1017)
Q Consensus 419 ~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~ 498 (1017)
|++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|+||.+++||+.|++.|+++|++++.+++.|
T Consensus 309 -V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h 386 (975)
T PRK06039 309 -VTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVP-DYAGKFVKDADKEIIRDLKERGLLFKAETYEH 386 (975)
T ss_pred -cCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCc-cccCCCHHHhhHHHHHHHHhCCCEeeeeeecC
Confidence 9999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred cccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHH-HHHHHHhhccCccceeecCCCCCcCcc
Q 001757 499 RLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTA-EWRRWLEAIRDWCVSRQLWWGHQIPAW 577 (1017)
Q Consensus 499 ~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~-~~~~wl~~l~DWcISRqr~WG~pIP~~ 577 (1017)
+||+|||||+||++++++||||+++++++++++++ ++++|+|++.++ ++.+||++++|||||||||||||||+|
T Consensus 387 ~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~-----~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw 461 (975)
T PRK06039 387 SYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELN-----QKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIW 461 (975)
T ss_pred CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhh-----CCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEE
Confidence 99999999999999999999999999999999988 579999999999 999999999999999999999999999
Q ss_pred eeccCchhhhccCCCCcceEEecCHHHHHHHH-----------------hhhcCCCccccccCCCcEEEEeccCcccccc
Q 001757 578 YVTLEDDELKELGSYNDHWIVARDEKEALAVA-----------------NKKFSGKKFEMCQDPDVLDTWFSSGLFPLSV 640 (1017)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~ 640 (1017)
+|..|+ .+.+..+.++..... ...||. +..++|++||||||||||++|+++
T Consensus 462 ~~~~~g-----------~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~-~~~~~r~~dVlDvWFdSg~~p~a~ 529 (975)
T PRK06039 462 RCEDCG-----------RIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPD-GGTMRRVPDVIDVWFDSGSMPYAQ 529 (975)
T ss_pred EecCCC-----------eEEEeccHHHHHHHhCCCcchhhhcccccccccccCCC-CcceEeccccccceeecCCccHHH
Confidence 997653 122322333332211 112332 446999999999999999999999
Q ss_pred ccCCCC-ChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccc
Q 001757 641 LGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING 719 (1017)
Q Consensus 641 lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g 719 (1017)
+|||++ ++.|++|||+|++++|+||+||||++|+++|+.++|+.||++|++||+|+|.+|+|||||+||||||.++|+
T Consensus 530 ~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~- 608 (975)
T PRK06039 530 LHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFD- 608 (975)
T ss_pred hCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHH-
Confidence 999986 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHH-HHHHHHHHHHHHHHHH
Q 001757 720 ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQR-VVGYRQWCNKLWNAVR 798 (1017)
Q Consensus 720 ~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~-v~~~r~f~nkl~N~~r 798 (1017)
+||+|+|||||++.++.++|++|+.+. +..+++++|+|||+++
T Consensus 609 ------------------------------------~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~ 652 (975)
T PRK06039 609 ------------------------------------KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYS 652 (975)
T ss_pred ------------------------------------HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHH
Confidence 899999999999988889999999999 7888999999999999
Q ss_pred HHHh--hhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccC
Q 001757 799 FSMS--KLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 875 (1017)
Q Consensus 799 f~l~--~l~~~~~p~~~-~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~ 875 (1017)
|++. ++. +|.+... .....++..|+||+++|+.+++.+.++|++|+|+.|++.+++|+ ++|||+|++.+|++++.
T Consensus 653 f~~~y~~~~-~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w~ 730 (975)
T PRK06039 653 FFVLYANLD-GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWK 730 (975)
T ss_pred HHHHHhhhc-cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhcc
Confidence 9863 332 2432211 11224578899999999999999999999999999999999998 99999999999998876
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCCCChHHHHHHHHHHH
Q 001757 876 DNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVES 955 (1017)
Q Consensus 876 ~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~ 955 (1017)
.... .++++++.+|+.+|+.+++||||||||+||+|||.|+.. ...+||++++||++++.+.|+.++..|+.+++
T Consensus 731 ~~~~--~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~---~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~~ 805 (975)
T PRK06039 731 EEDD--PDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTRE---DAPESVHLADWPEVDESLIDEELEEAMDLVRE 805 (975)
T ss_pred CCCc--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc---CCCCeeEecCCCCCccccCCHHHHHHHHHHHH
Confidence 5221 157789999999999999999999999999999999742 12469999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcceE---EEEecCcchHHHHHHhHHHHHHhhccCcEE
Q 001757 956 TVRCIRSLRAEVLGKQKNERLPA---IAFCQTKGVSEIIRSHELEIVTLSTSSSLK 1008 (1017)
Q Consensus 956 i~~~iRslr~~~~~k~i~~~~~~---~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~ 1008 (1017)
+++.+|++|++. +++.+.++ +|.+.++ ..+.++.+.+.|+.++||++|.
T Consensus 806 ii~~~r~~r~~~---~i~~~~pl~~~~v~~~~~-~~~~~~~~~~~i~~~~nv~~v~ 857 (975)
T PRK06039 806 IVSLGRSARKKA---GIKVRQPLSKITVAEDEE-VAEALERYEDLIKDELNVKEVP 857 (975)
T ss_pred HHHHHHHHHHHc---CCCCCCccceEEEecCHH-HHHHHHHHHHHHHHHhCcccch
Confidence 999999999998 88666543 3433333 5677888899999999999874
No 11
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-175 Score=1581.01 Aligned_cols=757 Identities=29% Similarity=0.500 Sum_probs=679.0
Q ss_pred CcCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC---CCCCcEEEECCCCCCCCCCCcchhHHHHHH
Q 001757 125 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK---SSKPSFVIVLPPPNVTGALHIGHALTTAIQ 201 (1017)
Q Consensus 125 ~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~---~~k~~f~i~~pPPy~nG~LHiGHal~~~i~ 201 (1017)
++++|+|.|+||.|+. .+|++|+++|+++++|++..+ +++|+|+++||||||||.+|||||+|++|+
T Consensus 6 tl~lp~T~fpmr~~l~----------~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilK 75 (933)
T COG0060 6 TLNLPKTDFPMRANLP----------KKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILK 75 (933)
T ss_pred cccCccCCCCccCChh----------hcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhh
Confidence 3899999999998885 699999999999999998763 678999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 001757 202 DTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWS 281 (1017)
Q Consensus 202 Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~ 281 (1017)
|+|.||++|+||+|.++|||||||||||..||++++. .+....++|.++|+++|++++.++.+.++++|+|||++.||+
T Consensus 76 DiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~-~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~ 154 (933)
T COG0060 76 DIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGI-GKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWE 154 (933)
T ss_pred hhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCC-CcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccC
Confidence 9999999999999999999999999999999999865 455567799999999999999999999999999999999999
Q ss_pred CccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeee
Q 001757 282 RECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYP 361 (1017)
Q Consensus 282 r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~ 361 (1017)
++|.|||+.|++.++++|.+|+++||||||.|||+|||+|+||||++||+|.++.++++ +++||
T Consensus 155 npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSI----------------yV~F~ 218 (933)
T COG0060 155 NPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSI----------------YVKFP 218 (933)
T ss_pred CCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceE----------------EEEEE
Confidence 99999999999999999999999999999999999999999999999999999888765 37788
Q ss_pred cCC----CcceEEEeeccccccccCcEEEEcCCCcc----------------------------c--------ccccCCe
Q 001757 362 LEG----GLGEIVVATTRVETMLGDTAIAIHPEDAR----------------------------Y--------SHLHGKF 401 (1017)
Q Consensus 362 l~~----~~~~i~v~TTrPeTl~g~tavaV~P~d~r----------------------------y--------~~L~G~~ 401 (1017)
+.+ .+.+|+||||||||||+|.|||||||.++ | ++|.|..
T Consensus 219 v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~ 298 (933)
T COG0060 219 VKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLR 298 (933)
T ss_pred eccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCE
Confidence 854 46899999999999999999999999642 1 3789999
Q ss_pred eecCCCC----CccceEecCccccCCCCCCceecCCCCCcchHHHHHHhC-CceeeeeCCCCccccCCCCCCCCCChhhH
Q 001757 402 AIHPFNG----RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHN-LEFINIFTDDGKINSNGGLEFEGMPRFKA 476 (1017)
Q Consensus 402 ~~~P~~~----~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~-L~~i~iid~~G~~~e~~g~~f~G~~~~~a 476 (1017)
|.|||.+ +..||+.+++ |+.+.|||+||+|||||++||.+|+++| ||++++||++|+|+++++ .|.|+.++||
T Consensus 299 y~hPf~~~~~~~~~~v~~gd~-VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~-~~~G~~v~dA 376 (933)
T COG0060 299 YEHPFYDFVYDRAFPVILGDH-VTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP-KYEGLFVKDA 376 (933)
T ss_pred eeCCcccccccceeeEEecCe-EecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccch-hhCCceeccC
Confidence 9999985 8999999995 9999999999999999999999999999 799999999999999998 9999999999
Q ss_pred HHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHH
Q 001757 477 REAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL 556 (1017)
Q Consensus 477 r~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl 556 (1017)
++.||+.|+++|+|++.+.+.|+|||||||++||+++.+|||||+++++++++++++ .+|+|+|++.++|+.+||
T Consensus 377 n~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i-----~~v~w~P~~~~~R~~~mv 451 (933)
T COG0060 377 NKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEI-----NKVNWVPDWGKNRFGNMV 451 (933)
T ss_pred CHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHH-----hcceEEChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 499999999999999999
Q ss_pred hhccCccceeecCCCCCcCcceeccCchhhhc---c---------CCCCcceEEecCHHHHHHHHhhhcCCCccccccCC
Q 001757 557 EAIRDWCVSRQLWWGHQIPAWYVTLEDDELKE---L---------GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDP 624 (1017)
Q Consensus 557 ~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~---~---------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1017)
+|++||||||||+||+|||+|+|+.+++.... . ..+.+.|.... . ......|+.++.+++|.+
T Consensus 452 e~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~-i----del~~~~~~~g~~~~rv~ 526 (933)
T COG0060 452 ENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPD-I----DELLPPCPEDGKEYRRVP 526 (933)
T ss_pred cCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccc-h----HhhcCCCCCCcceeEecC
Confidence 99999999999999999999999876543210 0 00001111100 0 001111223455899999
Q ss_pred CcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCcccc
Q 001757 625 DVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMS 704 (1017)
Q Consensus 625 dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMS 704 (1017)
||||||||||++|.++++ |.+...|..++ +|++.+|+||+||||++++++|++++|++||++|++|||++|++|+|||
T Consensus 527 DvlDVWFDSGs~~~a~~~-~~~~~~~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMS 604 (933)
T COG0060 527 DVLDVWFDSGSTPYAVLH-PRENLKFPALF-ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMS 604 (933)
T ss_pred cceEEEEcCCCCcccccC-CcccccCcccc-CcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCcc
Confidence 999999999999999999 77654444444 5999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHH
Q 001757 705 KSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVV 784 (1017)
Q Consensus 705 KSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~ 784 (1017)
||+||||+|.+|++ +||||+||||+++.. .+.|+.|+.+.++
T Consensus 605 KSlGN~v~P~~V~~-------------------------------------~yGADiLRLwv~ssd-~~~dl~~s~~il~ 646 (933)
T COG0060 605 KSLGNVVDPQDVID-------------------------------------KYGADILRLWVASSD-YWEDLRFSDEILK 646 (933)
T ss_pred ccCCCcCCHHHHHH-------------------------------------hhCchheeeeeeecC-chhccccCHHHHH
Confidence 99999999999999 999999999998755 7889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhH
Q 001757 785 GYRQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCD 863 (1017)
Q Consensus 785 ~~r~f~nkl~N~~rf~l~~l~~~~~p~~~-~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~ 863 (1017)
..++.+++|||++||+++++. +|+|... +....+..+|||||++|+.++++++++|++|+|+++++.+++|+..+|++
T Consensus 647 ~~~~~~r~irNt~rF~l~nl~-~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~ 725 (933)
T COG0060 647 QVREVYRKIRNTYRFLLGNLD-DFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSN 725 (933)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999986 4988754 34447888999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCC--CcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCC
Q 001757 864 VFIEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 941 (1017)
Q Consensus 864 ~Yle~~K~~l~~~--~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~ 941 (1017)
|||+.+|+++|++ ++. +|++|++|||++|..++++|+||+||+||||||.|+... ..+|||++.||.+.+.+
T Consensus 726 ~Yld~~kdr~y~~~~~s~---~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~---~~eSVhl~~~p~~~~~~ 799 (933)
T COG0060 726 WYLDIIKDRLYTEAADSP---DRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER---KEESVHLEDWPEVDEEL 799 (933)
T ss_pred HHHHHHHHHhhhcCCCCH---HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCC---CCceeEeccCCcccccc
Confidence 9999999999976 333 899999999999999999999999999999999998732 25899999999998877
Q ss_pred C--ChHHHHHHHHHHHHHHHHHHHHHHh
Q 001757 942 T--DERAEFEMDLVESTVRCIRSLRAEV 967 (1017)
Q Consensus 942 ~--~~~~e~~~~~v~~i~~~iRslr~~~ 967 (1017)
. +..+....+..+++...++.+....
T Consensus 800 ~~~~~~~~~r~~~~~k~R~~v~~~l~~~ 827 (933)
T COG0060 800 IDVEAALAARWEALLKLRDPVNKALEAA 827 (933)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 4556666777777777766665554
No 12
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.4e-173 Score=1629.15 Aligned_cols=790 Identities=23% Similarity=0.390 Sum_probs=692.2
Q ss_pred hcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccc
Q 001757 144 AKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1017)
Q Consensus 144 ~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1017)
.+.|||.++|++|+++|+++++|++..+ +++|+|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~Gw 84 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGW 84 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCcc
Confidence 3569999999999999999999999754 46789999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001757 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1017)
Q Consensus 222 D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~ 301 (1017)
||||||||.+||++++...+....++|+++|+++|++|+.+|.+.|+++++|||+|+||+++|+||||.|+++|+|+|.+
T Consensus 85 D~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~ 164 (1159)
T PLN02882 85 DCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQ 164 (1159)
T ss_pred CCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999999987643222234469999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcEEEcceeeeecCCCCcccccccc--ccccCCCceeEeccCccccceeeeeeeEeeecCCCc--ceEEEeecccc
Q 001757 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL--GEIVVATTRVE 377 (1017)
Q Consensus 302 L~ekGlIYr~~~~V~wcp~~~TaLsd~EV--e~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~--~~i~v~TTrPe 377 (1017)
|+++|||||+.++|+|||.|+|+|||+|+ +|+++.+++ ++++||+.++. .+++|||||||
T Consensus 165 l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~s----------------i~v~F~l~~~~~~~~l~iwTTtPw 228 (1159)
T PLN02882 165 LFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPA----------------VMVSFPIVGDPDNASFVAWTTTPW 228 (1159)
T ss_pred HHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcE----------------EEEEEEecCCCCCcEEEEEeCCcc
Confidence 99999999999999999999999999888 788887654 45888987643 68999999999
Q ss_pred ccccCcEEEEcCCCc------------------cc-------------------------------ccccCCeeecCCC-
Q 001757 378 TMLGDTAIAIHPEDA------------------RY-------------------------------SHLHGKFAIHPFN- 407 (1017)
Q Consensus 378 Tl~g~tavaV~P~d~------------------ry-------------------------------~~L~G~~~~~P~~- 407 (1017)
|||||+||||||+++ || ++|+|++|.|||.
T Consensus 229 TLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~ 308 (1159)
T PLN02882 229 TLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDY 308 (1159)
T ss_pred ccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccc
Confidence 999999999999976 22 1688999988872
Q ss_pred -----CCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCC-----ceeeeeCCCCccccCCCCCCCCCChhhHH
Q 001757 408 -----GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-----EFINIFTDDGKINSNGGLEFEGMPRFKAR 477 (1017)
Q Consensus 408 -----~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L-----~~i~iid~~G~~~e~~g~~f~G~~~~~ar 477 (1017)
++.+|||+|++ |++++|||+||+|||||++||++|++||| +++++||++|+|++++| +|+||.+++||
T Consensus 309 ~~~~~~~~~~Vi~~~~-V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~-~~~G~~v~eA~ 386 (1159)
T PLN02882 309 FSEFSDTAFRVVADDY-VTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVT-DFSGRYVKDAD 386 (1159)
T ss_pred cccccCceEEEEccCc-cCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCc-ccCCCCHHHhh
Confidence 46899999995 99999999999999999999999999999 79999999999999998 89999999999
Q ss_pred HHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEecccc-HHHHHHHH
Q 001757 478 EAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQY-TAEWRRWL 556 (1017)
Q Consensus 478 ~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~-~~~~~~wl 556 (1017)
+.|++.|+++|++++.+++.|+||+|||||+||++++++||||+++++++++++++ ++|+|+|++. +++|.+||
T Consensus 387 ~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~-----~~i~w~P~~~~~~r~~~wl 461 (1159)
T PLN02882 387 KDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN-----KQTYWVPDYVKEKRFHNWL 461 (1159)
T ss_pred HHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh-----CCcEEECCcchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999976 7899999999 58999999
Q ss_pred hhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhh-------------hcCC----Cccc
Q 001757 557 EAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANK-------------KFSG----KKFE 619 (1017)
Q Consensus 557 ~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-------------~~~~----~~~~ 619 (1017)
+|++|||||||||||||||+|+|+.++ .+++..+.++....... .+|. ....
T Consensus 462 ~~~~DW~ISRqR~WGtPIPvw~~~~~~-----------~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~ 530 (1159)
T PLN02882 462 ENARDWAVSRSRFWGTPLPIWISDDGE-----------EVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGV 530 (1159)
T ss_pred hcCcccceeeccccCCccceEEeCCCC-----------eEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhc
Confidence 999999999999999999999996442 23333333333221100 0121 1236
Q ss_pred cccCCCcEEEEeccCccccccccCCCC-ChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCC
Q 001757 620 MCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDA 698 (1017)
Q Consensus 620 ~~~~~dVlDtWFdSgl~p~s~lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~ 698 (1017)
++|++||||||||||+||++++|||.+ +++|+.+||+|++.+|+||+||||++|+++|++++|+.||++|++||||+|+
T Consensus 531 ~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde 610 (1159)
T PLN02882 531 LRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAE 610 (1159)
T ss_pred eEecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECC
Confidence 999999999999999999999999975 5678999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccC-CCcccc
Q 001757 699 HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTA-QSDKIN 777 (1017)
Q Consensus 699 ~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~-~~~Din 777 (1017)
+|+|||||+||||||.++|+ +||||+|||||++... .++|++
T Consensus 611 ~G~KMSKSlGNvIdP~evi~-------------------------------------~YGADaLR~~Ll~s~~~~~~d~~ 653 (1159)
T PLN02882 611 DGKKMSKSLKNYPDPNEVID-------------------------------------KYGADALRLYLINSPVVRAEPLR 653 (1159)
T ss_pred CCCCcccCCCCCCCHHHHHH-------------------------------------HhCcHHHHHHHHhCCcccCcCcc
Confidence 99999999999999999999 8999999999997543 378899
Q ss_pred ccHHHHHHH-HHHHHHHHHHHHHHHhhhCC-------CCCCCCCCCC-CCCChhhHHHHHHHHHHHHHHHHhhccCCHHH
Q 001757 778 LDIQRVVGY-RQWCNKLWNAVRFSMSKLGE-------GFVPPLKLHP-HNLPFSCKWILSVLNKAISRTASSLNSYEFSD 848 (1017)
Q Consensus 778 f~~~~v~~~-r~f~nkl~N~~rf~l~~l~~-------~~~p~~~~~~-~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~ 848 (1017)
|+.+.+.+. +++++++||+++|+++++.+ +|.|...... ...+.+|+||+++++.+++.+.++|++|+|+.
T Consensus 654 fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~ 733 (1159)
T PLN02882 654 FKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYT 733 (1159)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 999998754 67999999999999987642 3444311111 13467899999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhHHHHHhhcccccCCC-cchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCC
Q 001757 849 AASTVYSWWQYQFCDVFIEAIKPYFAGDN-PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKE 927 (1017)
Q Consensus 849 a~~~i~~f~~~~l~~~Yle~~K~~l~~~~-~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~ 927 (1017)
|++.|++|+ .++||+||+.+|||++.++ .. ++++++.||+.+|..+++||||||||+||+|||+|+.... ...+
T Consensus 734 A~~~I~~Fv-~~lsN~YIe~~Kprl~~~~~~~---~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~-~~~~ 808 (1159)
T PLN02882 734 VVPYLVKFI-DNLTNIYVRFNRKRLKGRTGEE---DCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLP-GSEE 808 (1159)
T ss_pred HHHHHHHHH-HHHhHHHHHhCCHhhhCCCChH---HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccC-CCCC
Confidence 999999998 5799999999999998653 33 6788999999999999999999999999999999975211 1247
Q ss_pred CeeecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc--eEE-EEecCcchHH-HHHHhHHHHHHhhc
Q 001757 928 SIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERL--PAI-AFCQTKGVSE-IIRSHELEIVTLST 1003 (1017)
Q Consensus 928 SI~~~~~P~~~~~~~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~~~~--~~~-i~~~~~~~~~-~l~~~~~~I~~l~~ 1003 (1017)
|||++.||++++.+.|+++|..|+.+++++..+|++|++. +++.+. ... +...+.+... ++..+.+.|+.++|
T Consensus 809 SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~---~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~i~~e~n 885 (1159)
T PLN02882 809 SIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRERH---NKPLKTPLKEMVVVHPDAEFLDDITGKLKEYVLEELN 885 (1159)
T ss_pred ceeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHc---CCCCCCccceeeEecCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999988 654443 333 3333333333 33678899999999
Q ss_pred cCcEEEecc
Q 001757 1004 SSSLKRISV 1012 (1017)
Q Consensus 1004 v~~v~v~~~ 1012 (1017)
+++|++..+
T Consensus 886 v~~v~~~~~ 894 (1159)
T PLN02882 886 VRSLVPCND 894 (1159)
T ss_pred cceEEEeec
Confidence 999998643
No 13
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-172 Score=1610.43 Aligned_cols=789 Identities=25% Similarity=0.405 Sum_probs=695.0
Q ss_pred CcCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHH
Q 001757 125 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQD 202 (1017)
Q Consensus 125 ~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D 202 (1017)
++++|+|.|+||.|+. ++|++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|
T Consensus 12 tl~lp~t~f~m~~~~~----------~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkD 81 (961)
T PRK13804 12 TLNLPQTAFPMRAGLP----------QKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKD 81 (961)
T ss_pred hcCCCCCCCCCCCChH----------HhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHH
Confidence 7899999999997764 799999999999999998754 4678999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 001757 203 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 282 (1017)
Q Consensus 203 ii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r 282 (1017)
+++||+||+||+|+|+|||||||||||.+||+++ ..+|++++++++++|+++|++|+.++++.|++||+|||+++||+|
T Consensus 82 ii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~-~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~ 160 (961)
T PRK13804 82 VIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKY-RAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDN 160 (961)
T ss_pred HHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhh-hhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCC
Confidence 9999999999999999999999999999999887 345778889999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeec
Q 001757 283 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 362 (1017)
Q Consensus 283 ~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l 362 (1017)
+|+||||.|+++++|+|.+|+++|||||+.+||+|||.|+|||||+||+|++..+.+ ++++|++
T Consensus 161 ~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~----------------~~v~F~~ 224 (961)
T PRK13804 161 PYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDT----------------IWVKFPV 224 (961)
T ss_pred CcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCce----------------EEEEEEe
Confidence 999999999999999999999999999999999999999999999999999877543 4577777
Q ss_pred CCC------cceEEEeeccccccccCcEEEEcCCCc-------------------c-------------------cc---
Q 001757 363 EGG------LGEIVVATTRVETMLGDTAIAIHPEDA-------------------R-------------------YS--- 395 (1017)
Q Consensus 363 ~~~------~~~i~v~TTrPeTl~g~tavaV~P~d~-------------------r-------------------y~--- 395 (1017)
.++ +.+++||||||||||||+||||||+++ + |+
T Consensus 225 ~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~ 304 (961)
T PRK13804 225 KDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLA 304 (961)
T ss_pred cCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEE
Confidence 542 468999999999999999999999973 4 23
Q ss_pred -----cccCCeeecCCCCC-----ccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCC-ceeeeeCCCCccccCC
Q 001757 396 -----HLHGKFAIHPFNGR-----KIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-EFINIFTDDGKINSNG 464 (1017)
Q Consensus 396 -----~L~G~~~~~P~~~~-----~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L-~~i~iid~~G~~~e~~ 464 (1017)
+|+|++|.|||.++ .+|||.+++ |++++|||+||+|||||++||++|++||| +++++||++|+|++++
T Consensus 305 ~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~-V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~ 383 (961)
T PRK13804 305 DVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDH-VTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENA 383 (961)
T ss_pred EEEhhhccCCEEECCCCCcccccceeEEEecCc-cCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCC
Confidence 79999999999998 899999995 99999999999999999999999999999 9999999999999988
Q ss_pred CCC--------CCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecch-------HHHHH
Q 001757 465 GLE--------FEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS-------MAMEA 529 (1017)
Q Consensus 465 g~~--------f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~-------l~~~a 529 (1017)
| + |.|+.+++||+.|++.|++.|++++.+++.|+||+|||||+||++++++||||+|++ +++++
T Consensus 384 ~-~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~a 462 (961)
T PRK13804 384 P-GFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRA 462 (961)
T ss_pred C-ccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHH
Confidence 7 6 899999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhcc-----------CCCCcceEE
Q 001757 530 LYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKEL-----------GSYNDHWIV 598 (1017)
Q Consensus 530 l~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~-----------~~~~~~w~~ 598 (1017)
++++ ++|+|+|+++++++.+||++++||||||||+||||||+|||.. ++.+.+. ..+.+.|+.
T Consensus 463 l~~i-----~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~w~~ 536 (961)
T PRK13804 463 LDAI-----DKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAED-GEILMDEEVNARIADAFEEEGADAWFA 536 (961)
T ss_pred HHHH-----hccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcCC-CCEeccHHHHHHHHHHHHhcCCccccc
Confidence 9999 6899999999999999999999999999999999999999953 2221110 012234442
Q ss_pred ecCHHHHHHHHhhhcCC---CccccccCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHH
Q 001757 599 ARDEKEALAVANKKFSG---KKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVM 675 (1017)
Q Consensus 599 ~~~~~~~~~~~~~~~~~---~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~ 675 (1017)
.. .. ..+++ +...++|++||||||||||++++..+++ +.++ .||+|++++|+||+||||+++++
T Consensus 537 ~~-~~-------~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~---~~~~--~~PaD~~~eG~Di~rgWF~s~ll 603 (961)
T PRK13804 537 EG-AK-------ERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLED---RPDL--KWPADLYLEGSDQHRGWFNSSLL 603 (961)
T ss_pred cC-HH-------HhcCcccCcccceEecCcceeeeecCCCCccccccC---Cccc--CCCceEEEEEcccccHHHHHHHH
Confidence 11 11 11221 2346999999999999999988776543 3344 58999999999999999999999
Q ss_pred HHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCC
Q 001757 676 LGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIP 755 (1017)
Q Consensus 676 ~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~ 755 (1017)
+++.++|..||++|++||||+|.+|+|||||+||||+|.++|+
T Consensus 604 ~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~------------------------------------- 646 (961)
T PRK13804 604 ESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK------------------------------------- 646 (961)
T ss_pred HHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHH
Q 001757 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAI 834 (1017)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~-~~~~~~~~~Drwil~~L~~~i 834 (1017)
+||+|+|||||++ +..++|++|+.+.+...++++++|||++||+++++.+ |.+... .....+..+|+||+++|+.++
T Consensus 647 ~yGaD~lRl~lls-~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~-~~~~~~~~~~~~~~~~D~wil~~l~~~~ 724 (961)
T PRK13804 647 QSGADILRLWVAS-VDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAH-FDPGEDVVAYADLPELERYMLHRLNELD 724 (961)
T ss_pred hcCHHHHHHHHHh-CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc-CCcccccCChhhcCHHHHHHHHHHHHHH
Confidence 8999999999997 5678999999999998899999999999999998864 654321 122356778999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 001757 835 SRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELW 914 (1017)
Q Consensus 835 ~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelw 914 (1017)
+.+.++|++|+|++|++.+++|++++|||+||+.+|||++++... +..|++++.+|+.+|+.+++||||||||+|||||
T Consensus 725 ~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~-~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw 803 (961)
T PRK13804 725 GLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPS-SLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAW 803 (961)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 999999999999999999999998999999999999999876221 1157789999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCeeecCCCCCCCCCCChHHHHHHHHHHH----HHHHHHHHHHHhccCCCCC--cceEEEEecCcchH
Q 001757 915 QRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVES----TVRCIRSLRAEVLGKQKNE--RLPAIAFCQTKGVS 988 (1017)
Q Consensus 915 q~L~~~~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~----i~~~iRslr~~~~~k~i~~--~~~~~i~~~~~~~~ 988 (1017)
++|+.. ..+||+++.||.+++.+.|++++..++.++. +..++|++|++. .|+. .+.+.|.+.+....
T Consensus 804 ~~L~~~----~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~---~i~~~~e~~v~l~~~~~~~~ 876 (961)
T PRK13804 804 LYRYPE----EEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAK---RIGSSLEAAPTVYIADPELL 876 (961)
T ss_pred HhcccC----CCCceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCcceeEEEEcCCHHHH
Confidence 999841 2369999999999988989999888776666 346788888876 6744 44555555553444
Q ss_pred HHHHHhHHHHHHhhccCcEEEe
Q 001757 989 EIIRSHELEIVTLSTSSSLKRI 1010 (1017)
Q Consensus 989 ~~l~~~~~~I~~l~~v~~v~v~ 1010 (1017)
+.++.. .|+.|++|++|++.
T Consensus 877 ~~l~~~--~l~~~~~vs~~~~~ 896 (961)
T PRK13804 877 AALEGL--DFAEICITSQLTVA 896 (961)
T ss_pred HHHHHH--HHHHHhhhCceEEe
Confidence 566665 49999999999986
No 14
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-172 Score=1608.24 Aligned_cols=787 Identities=28% Similarity=0.452 Sum_probs=699.3
Q ss_pred CCcCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHH
Q 001757 124 EEFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQ 201 (1017)
Q Consensus 124 ~~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~ 201 (1017)
.++++|+|.|+||.|+ .++|++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++
T Consensus 6 ~tl~lp~t~f~m~~~l----------~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~ 75 (912)
T PRK05743 6 DTLNLPKTDFPMRANL----------PKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILK 75 (912)
T ss_pred hhcCCCCCCCCCCCCh----------HHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHH
Confidence 3689999999999665 4799999999999999997643 567899999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 001757 202 DTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWS 281 (1017)
Q Consensus 202 Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~ 281 (1017)
|+++||+||+||+|+|+|||||||||||.+||+++ |.+++++++++|+++|++|++++++.|++||++||+++||+
T Consensus 76 Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l----~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~ 151 (912)
T PRK05743 76 DIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKL----GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWD 151 (912)
T ss_pred HHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHc----CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 99999999999999999999999999999999875 45677899999999999999999999999999999999999
Q ss_pred CccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeee
Q 001757 282 RECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYP 361 (1017)
Q Consensus 282 r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~ 361 (1017)
++|+||||.|+++|+++|.+|+++|+|||+.++|+|||.|+|+|||+||+|++..+. .++++|+
T Consensus 152 ~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~----------------~~yv~f~ 215 (912)
T PRK05743 152 NPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSP----------------SIYVAFP 215 (912)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCc----------------eEEEEEE
Confidence 999999999999999999999999999999999999999999999999999986643 3457888
Q ss_pred cCCC-------cceEEEeeccccccccCcEEEEcCCCc---------cc---------------------------cccc
Q 001757 362 LEGG-------LGEIVVATTRVETMLGDTAIAIHPEDA---------RY---------------------------SHLH 398 (1017)
Q Consensus 362 l~~~-------~~~i~v~TTrPeTl~g~tavaV~P~d~---------ry---------------------------~~L~ 398 (1017)
+.++ +.+++|||||||||+||+||||||+++ +| ++|+
T Consensus 216 l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 295 (912)
T PRK05743 216 VVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELE 295 (912)
T ss_pred ecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhc
Confidence 7653 368999999999999999999999984 66 4789
Q ss_pred CCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHH
Q 001757 399 GKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKARE 478 (1017)
Q Consensus 399 G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~ 478 (1017)
|++|.|||.++.+|||.+++ |++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|.|+++++||+
T Consensus 296 g~~~~~Pl~~~~~pvi~~~~-V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~-~~~Gl~v~ea~~ 373 (912)
T PRK05743 296 GLVAQHPFYDRDSPVILGDH-VTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAP-LFAGLFVFKANP 373 (912)
T ss_pred CCEEECCCCCCeeeEeCCCc-cCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCc-ccCCcCHHHhHH
Confidence 99999999999999999995 9999999999999999999999999999999999999999999988 899999999999
Q ss_pred HHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecch--HHHHHHHhhhccCCCceEEeccccHHHHHHHH
Q 001757 479 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWL 556 (1017)
Q Consensus 479 ~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~--l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl 556 (1017)
+|++.|+++|++++.+++.|+||||||||+||++++++||||++++ +++++++++ ++++|+|+++++++.+||
T Consensus 374 ~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~-----~~v~~~P~~~~~r~~~~i 448 (912)
T PRK05743 374 KIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAI-----EKVKWIPAWGKNRIESMV 448 (912)
T ss_pred HHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHH-----cccEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 999999999 579999999999999999
Q ss_pred hhccCccceeecCCCCCcCcceeccCchhhhc-c----------CCCCcceEEecCHHHHHHHHhhhcCCCccccccCCC
Q 001757 557 EAIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-L----------GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPD 625 (1017)
Q Consensus 557 ~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~-~----------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 625 (1017)
++++|||||||||||||||+|||..|++.... . ....+.|+... +...+|.+...+.|++|
T Consensus 449 ~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~--------~~~~~~~~~~~~~~~~D 520 (912)
T PRK05743 449 ENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELD--------AKELLPDEADEYEKETD 520 (912)
T ss_pred hcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccC--------HHHhcCCcccCEEECCc
Confidence 99999999999999999999999866432110 0 01122444221 11224433456899999
Q ss_pred cEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccc
Q 001757 626 VLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSK 705 (1017)
Q Consensus 626 VlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSK 705 (1017)
|||||||||++|++++++ +. +.+||+|++++|+||+||||++|++.++.++|..||++|++||||+|.+|+||||
T Consensus 521 vlDvWfdSg~s~~~~~~~---~~--~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSK 595 (912)
T PRK05743 521 ILDVWFDSGSSHAAVLEQ---RP--ELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSK 595 (912)
T ss_pred hhhhhhhhCCCHHHHhcC---cc--ccCCCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCC
Confidence 999999999999999885 22 2689999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH
Q 001757 706 SLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1017)
Q Consensus 706 SlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~ 785 (1017)
|+||||||.++|+ +||||+|||||++ ++.++|++|+.+.+.+
T Consensus 596 SlGNvIdP~~ii~-------------------------------------~yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 596 SLGNVIDPQDVIK-------------------------------------KYGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred CCCCcCCHHHHHH-------------------------------------hcChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 9999999999999 8999999999997 7789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHH
Q 001757 786 YRQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 864 (1017)
Q Consensus 786 ~r~f~nkl~N~~rf~l~~l~~~~~p~~~-~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~ 864 (1017)
.++++++|||++||+++++.+ |.+... ++...+..+|+||+++|+.+++.++++|++|+|+.|++.|++|+++++||+
T Consensus 638 ~~~~~~kl~N~~rf~~~nl~~-~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~ 716 (912)
T PRK05743 638 VAEAYRRIRNTLRFLLGNLND-FDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAF 716 (912)
T ss_pred HHHHHHHHHHHHHHHHhCccC-CCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhcee
Confidence 889999999999999998864 554221 122345788999999999999999999999999999999999998999999
Q ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCCCCh
Q 001757 865 FIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDE 944 (1017)
Q Consensus 865 Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~ 944 (1017)
||+.+|+++++.... +..|++++.+|+.+|+.+++||||||||+|||||++|+.. ..+||+++.||..++.+.|+
T Consensus 717 Yie~~K~rly~~~~~-~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~----~~~sv~~~~wP~~~~~~~~~ 791 (912)
T PRK05743 717 YLDIIKDRLYTDAAD-SLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGE----REESVFLEEWPEVPELADDE 791 (912)
T ss_pred eheeccHhhhcCCCC-cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccC----CCCceEEecCCCCccccCCH
Confidence 999999998875211 1157889999999999999999999999999999999731 24699999999999889999
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhccCCCCCc--ceEEEEecCcchHHHHHHhHHHHHHhhccCcEEEec
Q 001757 945 RAEFEMDLVES----TVRCIRSLRAEVLGKQKNER--LPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKRIS 1011 (1017)
Q Consensus 945 ~~e~~~~~v~~----i~~~iRslr~~~~~k~i~~~--~~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~v~~ 1011 (1017)
.++..++.+++ +++.+|..|++. .|+.. +.+.|.+.+ +.++...+.|..+++|++|++..
T Consensus 792 ~~~~~~~~~~~~r~~v~~~i~~~r~~~---~i~~~~~~~~~~~~~~----~~l~~~~~~l~~~~~vs~v~~~~ 857 (912)
T PRK05743 792 ELLAKWEELLEVRDEVNKALEEARKEK---VIGSSLEAEVTLYADA----ALLESLGDELRFLLIVSQVEVAD 857 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCcccceEEEEEcCH----HHHHHHHHHHHHHhhhCceEEec
Confidence 99999999986 566667777665 67544 445554432 66777778899999999999863
No 15
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=5e-172 Score=1606.91 Aligned_cols=793 Identities=24% Similarity=0.394 Sum_probs=683.9
Q ss_pred hhHHHHHHHHHHHcCCcccCCC-CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhH
Q 001757 150 SSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIAT 228 (1017)
Q Consensus 150 ~~vE~~w~~~W~~~~~f~~~~~-~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpi 228 (1017)
..+|++|+++|+++++|++..+ ..+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||||||||||
T Consensus 6 ~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpi 85 (974)
T PLN02843 6 VTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPI 85 (974)
T ss_pred HHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHH
Confidence 4799999999999999998764 335679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcE
Q 001757 229 QVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLI 308 (1017)
Q Consensus 229 q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlI 308 (1017)
|.+||+++.. .+++++++++|+++|++|++++++.|++||++||+++||+++|+||||.|+++|+++|.+|+++|+|
T Consensus 86 e~~vek~l~~---~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlI 162 (974)
T PLN02843 86 ELKVLQSLDQ---EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYI 162 (974)
T ss_pred HHHHHHHhch---hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 9999998732 2567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcceeeeecCCCCccccccccccccC-CCceeEeccCccccceeeeeeeEeeecCCC-------------cceEEEeec
Q 001757 309 YRDLRLVNWDCVLRTAISDIEVDYVDI-PKREMRNVPGYEKQVEFGVLTSFAYPLEGG-------------LGEIVVATT 374 (1017)
Q Consensus 309 Yr~~~~V~wcp~~~TaLsd~EVe~~~~-~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~-------------~~~i~v~TT 374 (1017)
||+.+||+|||+|+|||||+||+|++. .++ .++++|++.++ +.+|+||||
T Consensus 163 yr~~kpV~Wcp~~~Talae~Evey~e~~~~~----------------s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTT 226 (974)
T PLN02843 163 YRGRKPVHWSPSSRTALAEAELEYPEGHVSK----------------SIYVAFPVVSPSETSPEELEEFLPGLSLAIWTT 226 (974)
T ss_pred EecceeeeecCCCCCcchHhHhcccCCccCc----------------eEEEEEEecCCccccccccccccccceEEEEeC
Confidence 999999999999999999999999973 333 34466666532 248999999
Q ss_pred cccccccCcEEEEcCCCc-------------c-----------------------------------------------c
Q 001757 375 RVETMLGDTAIAIHPEDA-------------R-----------------------------------------------Y 394 (1017)
Q Consensus 375 rPeTl~g~tavaV~P~d~-------------r-----------------------------------------------y 394 (1017)
||||||||+||||||+++ | +
T Consensus 227 tPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g 306 (974)
T PLN02843 227 TPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPG 306 (974)
T ss_pred cchhhccCcEEEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeech
Confidence 999999999999999954 1 2
Q ss_pred ccccCCeeecCCCCCccceEe-cCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCCh
Q 001757 395 SHLHGKFAIHPFNGRKIPIIC-DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPR 473 (1017)
Q Consensus 395 ~~L~G~~~~~P~~~~~ipIi~-~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~ 473 (1017)
++|+|++|.|||.++.+|||. ++ ||++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|+|+.+
T Consensus 307 ~~L~g~~~~~P~~~~~~pii~~~~-~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~-~~~G~~v 384 (974)
T PLN02843 307 SDLEGCRYIHPLYNRESPVVIGGD-YITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAG-QFSGLSV 384 (974)
T ss_pred HHcCCCEEECCCCCCceeEEecCC-ccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCc-ccCCcEe
Confidence 689999999999999999975 67 59999999999999999999999999999999999999999999988 8999999
Q ss_pred h-hHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHH
Q 001757 474 F-KAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEW 552 (1017)
Q Consensus 474 ~-~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~ 552 (1017)
+ +||+.|++.|+++|++++.+++.|+||||||||+||++++++||||+++.+++++++++ ++|+|+|+.+++++
T Consensus 385 ~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~-----~~v~~~P~~~~~r~ 459 (974)
T PLN02843 385 LGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAI-----DKVKWIPAQGENRI 459 (974)
T ss_pred hhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHH-----hccEEEChHHHHHH
Confidence 8 89999999999999999999999999999999999999999999999999999999999 67999999999999
Q ss_pred HHHHhhccCccceeecCCCCCcCcceeccCchhhhc-----------cCCCCcceEEecCHHHHHHHHhhhcCCCccccc
Q 001757 553 RRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-----------LGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 621 (1017)
Q Consensus 553 ~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~-----------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1017)
.+||++++|||||||||||||||+|+|..+++.+.. .....+.|+.. +.++.. ...+.++...++
T Consensus 460 ~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~-~~~~l~---p~~~~~~~~~~~ 535 (974)
T PLN02843 460 RAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYM-DVEDLL---PEKYRDKASDYE 535 (974)
T ss_pred HHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccC-CHHHhC---cccccCchhhhE
Confidence 999999999999999999999999999766543110 01122344432 222221 111222234689
Q ss_pred cCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCc
Q 001757 622 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR 701 (1017)
Q Consensus 622 ~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~ 701 (1017)
|++||||||||||+++.+.+++. .+.+||+|++++|+||+||||++|++++++++|+.||++|++||+|+|.+|+
T Consensus 536 k~~DvlDvWFdSg~~~~~~~~~~-----~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~ 610 (974)
T PLN02843 536 KGTDTMDVWFDSGSSWAGVLGSR-----EGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGF 610 (974)
T ss_pred ecccccccchhcCCChHHHhccc-----cccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCC
Confidence 99999999999999887766532 1347999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHH
Q 001757 702 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 781 (1017)
Q Consensus 702 KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~ 781 (1017)
|||||+||||+|.++|+|++++ +++|+||+|+||||+++ +..++|++|+.+
T Consensus 611 KMSKSlGNvI~p~~vi~~~~~~----------------------------~~~~~yGaD~lR~~l~~-~~~~~d~~~s~~ 661 (974)
T PLN02843 611 KMSKSLGNVVDPRLVIEGGKNQ----------------------------KQEPAYGADVLRLWVAS-VDYTGDVLIGPQ 661 (974)
T ss_pred CcCCCCCCcCCHHHHHhhcccc----------------------------ccccccChHHHHHHHHh-cccCCCceeCHH
Confidence 9999999999999999975321 46789999999999986 556789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhH
Q 001757 782 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 861 (1017)
Q Consensus 782 ~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l 861 (1017)
.+.+.+++++||||++||+++|+.+ |.|....+...+..+|+||+++|+.+++++.++|++|+|++|++.|++|++.++
T Consensus 662 ~l~~~~~~~~kl~n~~rf~lgnl~~-~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dl 740 (974)
T PLN02843 662 ILKQMSDIYRKLRGTLRYLLGNLHD-WKPDNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDL 740 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccC-CCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 655222223345678999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCC
Q 001757 862 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 941 (1017)
Q Consensus 862 ~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~ 941 (1017)
||+||+.+|||++.+... +..|++++.+|+.+++.+++||||||||+|||||++|+...+....+||+++.||..++.+
T Consensus 741 sn~Yie~~Kprly~~~~~-~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~~ 819 (974)
T PLN02843 741 SNFYLDVAKDRLYVGGTT-SFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEEW 819 (974)
T ss_pred hHHHHHhcchhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchhh
Confidence 999999999999865221 1157789999999999999999999999999999999852110124699999999998887
Q ss_pred CC--hHHHHHH----HHHHHHHHHHHHHHHHhccCCCC--CcceEEEEecCcchHHHHHH------hHHHHHHhhccCcE
Q 001757 942 TD--ERAEFEM----DLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRS------HELEIVTLSTSSSL 1007 (1017)
Q Consensus 942 ~~--~~~e~~~----~~v~~i~~~iRslr~~~~~k~i~--~~~~~~i~~~~~~~~~~l~~------~~~~I~~l~~v~~v 1007 (1017)
.| +.++..+ +...++++++|++|++. .|+ .+..++|.+.+.+..+.++. ..+.|+.|++|++|
T Consensus 820 ~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~---~i~~~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~vs~v 896 (974)
T PLN02843 820 LSFPAEDVDFWSLLLEVRDEVNKVLESARNGK---LIGASLEAKVYLHASDASLAARLAELCGASNGADELRRIFITSQV 896 (974)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcccceeEEEEeCCHHHHHHHHhhccccchHHHHHHHhccCce
Confidence 65 4444434 44455778889998887 774 45566666655545566766 24779999999999
Q ss_pred EEec
Q 001757 1008 KRIS 1011 (1017)
Q Consensus 1008 ~v~~ 1011 (1017)
+++.
T Consensus 897 ~~~~ 900 (974)
T PLN02843 897 EVVS 900 (974)
T ss_pred Eeec
Confidence 9863
No 16
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-168 Score=1561.50 Aligned_cols=782 Identities=32% Similarity=0.566 Sum_probs=703.0
Q ss_pred hhhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccc
Q 001757 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1017)
Q Consensus 142 ~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1017)
++++.|||.++|++||++|+++++|++..+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~ 84 (800)
T PRK13208 5 ELPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGW 84 (800)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCc
Confidence 35678999999999999999999999987666789999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001757 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1017)
Q Consensus 222 D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~ 301 (1017)
||||+|||.+||+++ |++++++|+++|++.|++|++++++.|++||++||+|+||+|+|+||||.|+++|+|+|.+
T Consensus 85 D~~Glpie~~~ek~~----g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~ 160 (800)
T PRK13208 85 DDNGLPTERKVEKYY----GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLD 160 (800)
T ss_pred CCCcchHHHHHHHHh----CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHH
Confidence 999999999999754 7888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeecccccccc
Q 001757 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLG 381 (1017)
Q Consensus 302 L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g 381 (1017)
|+++|+|||+.++|+|||.|+|+|||+||+|++.. |.+++++|++.+ +.+|+|||||||||+|
T Consensus 161 L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~----------------~~~~~ikf~~~~-~~~l~v~TtrPeTl~g 223 (800)
T PRK13208 161 LYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRERE----------------GKLNYIKFPVED-GEEIEIATTRPELLPA 223 (800)
T ss_pred HHHCCCeeecCcccccCCCCCCccchhhhcccccc----------------ceEEEEEEEecC-CCEEEEEeCCcchhhh
Confidence 99999999999999999999999999999988765 346778999875 4689999999999999
Q ss_pred CcEEEEcCCCcccccccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccc
Q 001757 382 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 461 (1017)
Q Consensus 382 ~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~ 461 (1017)
|+||||||++++|++|+|+++.||++++++|||++++ |++++|||+||+||+||++||++|++|||+++++||++|+++
T Consensus 224 ~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~ 302 (800)
T PRK13208 224 CVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPL-VDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMT 302 (800)
T ss_pred CeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCc-cCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEe
Confidence 9999999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCce
Q 001757 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1017)
Q Consensus 462 e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i 541 (1017)
+++| +|+||++++||+.|++.|+++|++.+.+++.|+||+|||||++|++++++||||+++++++++++++ +++
T Consensus 303 ~~~g-~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~-----~~~ 376 (800)
T PRK13208 303 EAAG-KLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERG-----KEI 376 (800)
T ss_pred cCCc-ccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhh-----cCc
Confidence 9999 8999999999999999999999999999999999999999999999999999999999999999999 579
Q ss_pred EEeccccHHHHHHHHhhcc-CccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCc-cc
Q 001757 542 ELIPRQYTAEWRRWLEAIR-DWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKK-FE 619 (1017)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~-DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~ 619 (1017)
+|+|++.++++.+||++++ |||||||||||||||+|+|..|+.... .. ..|+.-....++.. ...|+.++ ..
T Consensus 377 ~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~---~~-~~~l~~~~~~d~~~--~~~~~~~g~~~ 450 (800)
T PRK13208 377 NWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPIL---PD-EEDLPVDPTKDEPP--GYKCPQCGSPG 450 (800)
T ss_pred EEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeec---Cc-hhhhccCchhhccc--cccccccCCcC
Confidence 9999999999999999988 999999999999999999987642110 00 01110000001100 01222222 35
Q ss_pred cccCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCC
Q 001757 620 MCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 699 (1017)
Q Consensus 620 ~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~ 699 (1017)
++|++||||||||||++|++++|||.++.+|++|||+|++++|+||++||+++|++++..++|..||++|++||+|+|.+
T Consensus 451 ~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~ 530 (800)
T PRK13208 451 FEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPD 530 (800)
T ss_pred EEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCC
Confidence 88999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCcccccc
Q 001757 700 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLD 779 (1017)
Q Consensus 700 G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~ 779 (1017)
|+|||||+||+|+|.++|+ +||+|++||||+ .++.++|++|+
T Consensus 531 G~KMSKS~GN~i~p~~~i~-------------------------------------~yg~D~lR~~l~-~~~~~~d~~fs 572 (800)
T PRK13208 531 GKKMSKSKGNVVTPEELLE-------------------------------------KYGADAVRYWAA-SARLGSDTPFD 572 (800)
T ss_pred CCCCCCCCCCCCCHHHHHH-------------------------------------HcCccHHHHHHh-cCCCCCCceec
Confidence 9999999999999999999 899999999999 78889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 001757 780 IQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQY 859 (1017)
Q Consensus 780 ~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~ 859 (1017)
.+.+.+.++|++||||+++|++. +.+.... .........|+|++++|+.+++.+.++|++|+|+.|++.+++|+++
T Consensus 573 ~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~~---~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~ 648 (800)
T PRK13208 573 EKQVKIGRRLLTKLWNASRFVLH-FSADPEP---DKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWH 648 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccccccc---CccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999873 3221101 0112456789999999999999999999999999999999999988
Q ss_pred hHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCC
Q 001757 860 QFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 939 (1017)
Q Consensus 860 ~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~ 939 (1017)
++||+||+.+|++++.++.. ..+++++.+|+.+|+.+++||||||||+|||||++|+. +||+.++||+.++
T Consensus 649 ~~~n~Yie~~k~~~~~~~~~--~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~~-------~si~~~~wP~~~~ 719 (800)
T PRK13208 649 VFCDDYLELVKSRAYGEDEE--EEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLYG-------GSVHRASWPEPDE 719 (800)
T ss_pred HhhHHHHHHhhHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCCC-------CceEeccCCCCCc
Confidence 99999999999998765332 02667889999999999999999999999999999971 4899999999988
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcce--EEEEecCcchHHHHHHhHHHHHHhhccCcEEEecc
Q 001757 940 GWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP--AIAFCQTKGVSEIIRSHELEIVTLSTSSSLKRISV 1012 (1017)
Q Consensus 940 ~~~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~~~~~--~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~v~~~ 1012 (1017)
.+.++.++..++.++++++.+|++|+++ +++.+.+ +.+...+.+ .+.++.+.+.|+.++||++|+++..
T Consensus 720 ~~~~~~~~~~~~~v~~ii~~iR~~r~~~---~i~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~~~~~ 790 (800)
T PRK13208 720 ELIDEEDEELGELAKEILSAVRKYKSEA---GLSLNAPLKKVEVYGPAD-LELLEAAEEDLKAAGNIEELELVEG 790 (800)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCccceEEEecchH-HHHHHHHHHHHHHHhCcCeEEEecC
Confidence 8888999999999999999999999998 7754544 343344444 7788889999999999999998654
No 17
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=4.3e-164 Score=1536.08 Aligned_cols=762 Identities=29% Similarity=0.483 Sum_probs=669.1
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecc
Q 001757 143 MAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1017)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG 220 (1017)
++..|||.++|++||++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 34569999999999999999999997653 4678999999999999999999999999999999999999999999999
Q ss_pred cCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHH
Q 001757 221 MDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFV 300 (1017)
Q Consensus 221 ~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~ 300 (1017)
|||||||||.+||++++.....+.+.+++++|+++|++|+.++++.+++||++||+|+||+|+|+||||.|+++|+|+|.
T Consensus 82 ~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~ 161 (861)
T TIGR00392 82 WDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFK 161 (861)
T ss_pred cCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHH
Confidence 99999999999998864322233445788999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcEEEcceeeeecCCCCcccccccccccc----CCCceeEeccCccccceeeeeeeEeeecCCCcc--------e
Q 001757 301 RLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD----IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG--------E 368 (1017)
Q Consensus 301 ~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~----~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~--------~ 368 (1017)
+|+++|||||+.++|+|||.|+|+|||+||+|++ ..+ ..++++|++.+++. +
T Consensus 162 ~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~----------------~~~~v~f~~~~~~~~~~~~~~~~ 225 (861)
T TIGR00392 162 EAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKD----------------PSIYVKFPVKKDKKTYLKVKLSS 225 (861)
T ss_pred HHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccC----------------ceEEEEEEecCCcccccccccce
Confidence 9999999999999999999999999999999875 333 34567888865544 8
Q ss_pred EEEeeccccccccCcEEEEcCCCc-----------cc--------------------------ccccCCeeecCCCCCcc
Q 001757 369 IVVATTRVETMLGDTAIAIHPEDA-----------RY--------------------------SHLHGKFAIHPFNGRKI 411 (1017)
Q Consensus 369 i~v~TTrPeTl~g~tavaV~P~d~-----------ry--------------------------~~L~G~~~~~P~~~~~i 411 (1017)
|+|||||||||+||+||||||+++ +| ++|+|++|.||+.++.+
T Consensus 226 l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~ 305 (861)
T TIGR00392 226 LLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVS 305 (861)
T ss_pred EEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCcccc
Confidence 999999999999999999999965 44 56899999999999988
Q ss_pred ------ceE-ecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCC------CCCCCChhhHHH
Q 001757 412 ------PII-CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGL------EFEGMPRFKARE 478 (1017)
Q Consensus 412 ------pIi-~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~------~f~G~~~~~ar~ 478 (1017)
||| +++ +|++++|||+||+|||||++||++|++|||+++++||++|+|+++.+. .|.|+++++||+
T Consensus 306 ~~~~~~p~v~~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~ 384 (861)
T TIGR00392 306 QLKEGAPVVIGGD-HVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANK 384 (861)
T ss_pred ccccCCcEEeCCC-CCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHH
Confidence 974 557 599999999999999999999999999999999999999998876652 489999999999
Q ss_pred HHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhh
Q 001757 479 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA 558 (1017)
Q Consensus 479 ~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~ 558 (1017)
.|++.|+++|++++.+++.|+||+|||||+||++++++||||+++++++++++++ ++++|+|++.++++.+||++
T Consensus 385 ~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~-----~~i~~~P~~~~~~~~~~l~~ 459 (861)
T TIGR00392 385 IIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQI-----KKVNWVPEWGEGRFGNWLEN 459 (861)
T ss_pred HHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHh-----CCcEEECchHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999 68999999999999999999
Q ss_pred ccCccceeecCCCCCcCcceeccCchhhhcc----------CCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEE
Q 001757 559 IRDWCVSRQLWWGHQIPAWYVTLEDDELKEL----------GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLD 628 (1017)
Q Consensus 559 l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~----------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlD 628 (1017)
++||||||||+||||||+|+|+.+++..... ..+.+.|..... .+........|+.+ ..++|++||||
T Consensus 460 l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~-~~~~~~~~~~~~~~-~~~~r~~dvlD 537 (861)
T TIGR00392 460 RPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLH-RDFLDKITLKSGDG-GEYRRVPDVLD 537 (861)
T ss_pred CCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccccccch-hhhcCchhccCCCC-cceEEcccccc
Confidence 9999999999999999999998665421000 001122322110 11111112234433 47899999999
Q ss_pred EEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCC
Q 001757 629 TWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLG 708 (1017)
Q Consensus 629 tWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlG 708 (1017)
||||||++|++.++||.++.+|++|||+|++++|+||+||||++|++.++.++|..||++|++||||+|.+|+|||||+|
T Consensus 538 vWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkG 617 (861)
T TIGR00392 538 VWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLG 617 (861)
T ss_pred chhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCC
Confidence 99999999999999998777899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHH
Q 001757 709 NVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ 788 (1017)
Q Consensus 709 NvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~ 788 (1017)
|||+|.|+|+ +||+|+|||||++. +.++|++|+.+.+.+.++
T Consensus 618 NvI~p~d~i~-------------------------------------~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~ 659 (861)
T TIGR00392 618 NVVDPLKVIN-------------------------------------KYGADILRLYVASS-DPWEDLRFSDEILKQVVE 659 (861)
T ss_pred CCCCHHHHHH-------------------------------------HcCHHHHHHHHHhC-CCCCCceECHHHHHHHHH
Confidence 9999999999 89999999999988 889999999999988665
Q ss_pred -HHHHHHHHHHHHH--hhhCCCCCCCC-CCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHH
Q 001757 789 -WCNKLWNAVRFSM--SKLGEGFVPPL-KLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 864 (1017)
Q Consensus 789 -f~nkl~N~~rf~l--~~l~~~~~p~~-~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~ 864 (1017)
++|++||+++|++ +++.+ |.|.. ......+...|+|++++++.+++.+.++|++|+|+.|++.+++|++.++||+
T Consensus 660 ~~~n~l~N~~~~~~~~~~l~~-~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~ 738 (861)
T TIGR00392 660 KYRKIRWNTYRFLLTYANLDK-FDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNW 738 (861)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 66643 54421 1112245678999999999999999999999999999999999998889999
Q ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCCCCh
Q 001757 865 FIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDE 944 (1017)
Q Consensus 865 Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~ 944 (1017)
|++.+|++++..... + .+++++.+|+.+++.+++||+|||||+|||||+.|+... ..+||+.++||+.++.+.|+
T Consensus 739 Yi~~~k~~lw~~~~~-~-~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~~---~~~si~~~~wP~~~~~~~d~ 813 (861)
T TIGR00392 739 YIRIIRDRLYCEAKD-N-DKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGE---EEESVHLNLWPEVDEEFIDE 813 (861)
T ss_pred HHHHhhHHhccCCCC-H-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccccC---CCCceeccCCCCCchhhcCH
Confidence 999999987754221 1 344789999999999999999999999999999997521 23699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 001757 945 RAEFEMDLVESTVRCIRSLRAEVLGKQKNER 975 (1017)
Q Consensus 945 ~~e~~~~~v~~i~~~iRslr~~~~~k~i~~~ 975 (1017)
.++..++.++++++.+|++|++. +++.+
T Consensus 814 ~~~~~~~~l~~~i~~ir~ir~~~---~~~~~ 841 (861)
T TIGR00392 814 ALEANMAIVREIVEAFLALRDAA---NKKLR 841 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---Chhhh
Confidence 99999999999999999999998 66433
No 18
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=9.3e-148 Score=1397.57 Aligned_cols=733 Identities=20% Similarity=0.287 Sum_probs=606.9
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCC----CCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeee
Q 001757 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKS----SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 218 (1017)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~----~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~ 218 (1017)
+++.+++.++|++||++|+++++|+++.+. ++++|++++||||+||.||||||+|++++|+++||+||+||+|+|+
T Consensus 9 ~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp 88 (1084)
T PLN02959 9 TARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLP 88 (1084)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCC
Confidence 345677889999999999999999998752 3478999999999999999999999999999999999999999999
Q ss_pred cccCccChhHHHHHHHHHH--HHhcCC----------------------ccccChHHHHHHHHHHHHH------------
Q 001757 219 PGMDHAGIATQVVVEKKLM--RERKLT----------------------RHDIGREQFVSEVWKWKDE------------ 262 (1017)
Q Consensus 219 pG~D~~Glpiq~~vEk~l~--~~~~~~----------------------~~~~g~e~f~~~~~~~~~~------------ 262 (1017)
|||||||+||+..|||... .+.|.. ..++++++|+++|++++.+
T Consensus 89 ~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~ 168 (1084)
T PLN02959 89 FAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMR 168 (1084)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHh
Confidence 9999999999999988531 223422 2356788999998887655
Q ss_pred ---------------------HHHHHHHHHHHhccccccCCccccCC--hhhHHHHHHHHHHHhhCCcEEEcceeeeecC
Q 001757 263 ---------------------YGGTILRQQRRLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGLIYRDLRLVNWDC 319 (1017)
Q Consensus 263 ---------------------~~~~i~~ql~rlG~s~DW~r~~~T~d--~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp 319 (1017)
|...++++|++||+++||+|+|+||| |.|.++|+|+|.+|+++|+||||.|||+|||
T Consensus 169 ~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp 248 (1084)
T PLN02959 169 SFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSP 248 (1084)
T ss_pred hcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCC
Confidence 33678999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCccccccccccccCCCce---eEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCc----
Q 001757 320 VLRTAISDIEVDYVDIPKRE---MRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDA---- 392 (1017)
Q Consensus 320 ~~~TaLsd~EVe~~~~~~~t---~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~---- 392 (1017)
.|+|+|||+|+++.+..++. +++|+..+.. .+. +. .+.+++.+++|||||||||+|||||||||+++
T Consensus 249 ~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~--~~~---~~-~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~ 322 (1084)
T PLN02959 249 LDGQPCADHDRASGEGVGPQEYVLIKMEVLPPF--PGK---LK-ALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAY 322 (1084)
T ss_pred CCCCCchhhHHhcCCCCCcceeEEEEEeecCcc--hhh---hh-hcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEE
Confidence 99999999999987644432 2333322110 000 00 12345679999999999999999999999976
Q ss_pred ------------c------c------------------ccccCCeeecCCCCCc-cceEecCccccCCCCCCceecCCCC
Q 001757 393 ------------R------Y------------------SHLHGKFAIHPFNGRK-IPIICDAILVDPKFGTGAVKITPAH 435 (1017)
Q Consensus 393 ------------r------y------------------~~L~G~~~~~P~~~~~-ipIi~~~~~V~~~~GTG~V~~~PaH 435 (1017)
+ | ++|+|+.|.||+.+++ +||+++.+ |++++|||+||+||||
T Consensus 323 ~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~-V~~~~GTGvV~~vPah 401 (1084)
T PLN02959 323 EINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLT-ILTDKGTGVVTSVPSD 401 (1084)
T ss_pred EecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEE-EeCCCCeeeEEeCCCC
Confidence 2 4 5799999999999887 89999995 9999999999999999
Q ss_pred CcchHHH----------HHHhCC--------ceeeeeCCCCc----------------------------------cccC
Q 001757 436 DPNDFDV----------GKRHNL--------EFINIFTDDGK----------------------------------INSN 463 (1017)
Q Consensus 436 ~~~Dy~~----------~~~~~L--------~~i~iid~~G~----------------------------------~~e~ 463 (1017)
||+||.+ +++||| +++++||.+|. |++.
T Consensus 402 ~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g 481 (1084)
T PLN02959 402 SPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDG 481 (1084)
T ss_pred CHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccc
Confidence 9999998 577887 56899998763 3333
Q ss_pred ---CCCCCCCCChhhHHHHHHHHHHHcCCccc-cccccccccccccCCCeeeeeccccceeecc--hHHHHHHHhhhccC
Q 001757 464 ---GGLEFEGMPRFKAREAVNEALKKKGLYRG-AKDNEMRLGLCSRSNDVVEPMIKPQWYVNCN--SMAMEALYAVMDDD 537 (1017)
Q Consensus 464 ---~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~-~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~--~l~~~al~~v~~~~ 537 (1017)
+| +|+|++|++||+.|++.|+++|+++. .++ ..|+|+|||++|++++++||||+++ ++++++++++
T Consensus 482 ~m~~g-~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l---- 553 (1084)
T PLN02959 482 TMLVG-EYAGRKVQEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCL---- 553 (1084)
T ss_pred cccCc-CcCCcCHHHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHH----
Confidence 67 89999999999999999999998764 443 3589999999999999999999998 6999999999
Q ss_pred CCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCC-
Q 001757 538 KKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGK- 616 (1017)
Q Consensus 538 ~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~- 616 (1017)
++|+|+|++++++|.+||+|++||||||||||||||| |++...-+.+.+++.++.++++++..+.. ..++..
T Consensus 554 -~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIP-Wd~~~~ieslsdstiy~a~yti~~~~~~~-----~~~g~~~ 626 (1084)
T PLN02959 554 -SKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIP-WDEQFLIESLSDSTIYMAYYTVAHLLQGG-----DMYGKDK 626 (1084)
T ss_pred -cccEEECHHHHHHHHHHHhCCCceeecccccCCCcCC-cccceeeccCCCCceeechhhHHHHHhhh-----hccCCcc
Confidence 6899999999999999999999999999999999999 75422111233455666655544332211 111111
Q ss_pred -cccccc-CCCcEEEEeccCccccccccCCCC-----ChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCc-eE
Q 001757 617 -KFEMCQ-DPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF-TK 688 (1017)
Q Consensus 617 -~~~~~~-~~dVlDtWFdSgl~p~s~lg~p~~-----~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pf-k~ 688 (1017)
.+...+ ++|||||||+||++|+++ |||.+ +.+|++|||+|++++|+||+|+|+.++++.+.+++++.|| +.
T Consensus 627 ~~i~~~~~~~dV~D~wF~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~ 705 (1084)
T PLN02959 627 SSIKPEQMTDEVWDFVFCGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRG 705 (1084)
T ss_pred ccCChhhcCccceeEeecCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 122233 689999999999999998 99985 5789999999999999999999999999999999999999 67
Q ss_pred EEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHh
Q 001757 689 VYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVS 768 (1017)
Q Consensus 689 V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~ 768 (1017)
|++||+|+ .+|+|||||+||||+|.++|+ +||||+|||||++
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~-------------------------------------kyGADalRl~la~ 747 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIE-------------------------------------EFSADATRFALAD 747 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHH-------------------------------------HhCchHHHHHHhh
Confidence 99999999 999999999999999999999 8999999999998
Q ss_pred ccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCH
Q 001757 769 YTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGE--GFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEF 846 (1017)
Q Consensus 769 ~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~--~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f 846 (1017)
.++..+|++|+.+.+.. +..+++|.++|+..++.. .+.+ ...+...|+||+++|+.+++.++++|++|+|
T Consensus 748 ~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~~~~~-----~~~~~~~D~wils~l~~~i~~v~~a~e~y~f 819 (1084)
T PLN02959 748 AGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAESSLRT-----GPPSTYADRVFENEINIAIAETEKNYEAMMF 819 (1084)
T ss_pred cCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhcccCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 88888999999887764 344567777776554431 1211 1124678999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHH-HHhhcc--cccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCC
Q 001757 847 SDAASTVYSWWQYQFCDVF-IEAIKP--YFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC 923 (1017)
Q Consensus 847 ~~a~~~i~~f~~~~l~~~Y-le~~K~--~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~ 923 (1017)
+.|++.. +| |+..++ ++++++. ..++.+|+.+|+.+++||||||||+|||||+.|+..
T Consensus 820 ~~A~~~~----------~Yel~~~k~~yr~~~~~~------~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~--- 880 (1084)
T PLN02959 820 REALKSG----------FYDLQAARDEYRLSCGSG------GMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKK--- 880 (1084)
T ss_pred HHHHHHH----------HHHHHHhHHHHhhccccc------hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCC---
Confidence 9999963 23 555555 4444321 145779999999999999999999999999999531
Q ss_pred CCCCCeeecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 001757 924 ATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEV 967 (1017)
Q Consensus 924 ~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~i~~~iRslr~~~ 967 (1017)
.+||++++||.++. .|+.++..++.+++++..+|+++..+
T Consensus 881 --~~sI~~~~wP~~~~--~d~~~e~~~~~l~~~i~~iR~~~~~~ 920 (1084)
T PLN02959 881 --EGFAVTAGWPVAGE--PDLTLKRANKYLQDSIVSFRKLLQKQ 920 (1084)
T ss_pred --CCeEEecCCCCCCc--cCHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 36999999999873 48889999999999999999999876
No 19
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=3.6e-144 Score=1356.27 Aligned_cols=731 Identities=21% Similarity=0.316 Sum_probs=622.1
Q ss_pred hHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHH
Q 001757 151 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQV 230 (1017)
Q Consensus 151 ~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~ 230 (1017)
+||++||++|+++++|+++.+ ++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||||+||+.
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~ 80 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHH
Confidence 599999999999999999764 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----cCCccccChHHHHHHH--HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHh
Q 001757 231 VVEKKLMRER-----KLTRHDIGREQFVSEV--WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLY 303 (1017)
Q Consensus 231 ~vEk~l~~~~-----~~~~~~~g~e~f~~~~--~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ 303 (1017)
++|+...... ..+.+++++++|.+.| ++|+++|.+.+++||++||+|+||+|+|+||||.|.++|+|+|.+|+
T Consensus 81 ~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~ 160 (938)
T TIGR00395 81 LAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK 160 (938)
T ss_pred HHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH
Confidence 9988532211 1255789999999987 99999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCc
Q 001757 304 KEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDT 383 (1017)
Q Consensus 304 ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~t 383 (1017)
++|+|||+.++|+|||.|+|+|||+||++.+..+. +.+++++|++.+++.+|+|||||||||+|+|
T Consensus 161 e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~--------------~~~~~ikf~~~~~~~~l~~aTtRPETl~g~t 226 (938)
T TIGR00395 161 ELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTI--------------VEYILIKFELEDGAFYFVAATLRPETVYGVT 226 (938)
T ss_pred HCCCEecCCeeEeecCCCCCCCchhHhccCCcccc--------------ceEEEEEEEcCCCceEEEEeeCCcchhhcce
Confidence 99999999999999999999999999987643221 3456688888776779999999999999999
Q ss_pred EEEEcCCCc---------------------cc-------------ccccCCeeecCCCCCccceEecCccccCCCCCCce
Q 001757 384 AIAIHPEDA---------------------RY-------------SHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAV 429 (1017)
Q Consensus 384 avaV~P~d~---------------------ry-------------~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V 429 (1017)
||||||+++ +| ++|+|+++.||+.++.+||+++++ |++++|||+|
T Consensus 227 av~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~-V~~~~GTGvV 305 (938)
T TIGR00395 227 NCWVNPTITYVIAEVGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEF-VDTTKGTGVV 305 (938)
T ss_pred eEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecce-eecCCCcceE
Confidence 999999986 23 689999999999999999999995 9999999999
Q ss_pred ecCCCCCcchHHHHHHh--------------CCceeeeeCC---------------------------------------
Q 001757 430 KITPAHDPNDFDVGKRH--------------NLEFINIFTD--------------------------------------- 456 (1017)
Q Consensus 430 ~~~PaH~~~Dy~~~~~~--------------~L~~i~iid~--------------------------------------- 456 (1017)
|+|||||++||.+++++ +|+++++|+.
T Consensus 306 ~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~ 385 (938)
T TIGR00395 306 MSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYH 385 (938)
T ss_pred EeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhcc
Confidence 99999999999998864 4666776642
Q ss_pred CCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeee-ccccceeecc--hHHHHHHHhh
Q 001757 457 DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPM-IKPQWYVNCN--SMAMEALYAV 533 (1017)
Q Consensus 457 ~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~-~~~QWFi~~~--~l~~~al~~v 533 (1017)
+|+|++++| +|+|+++++||+.|++.|+++|+++..+++. ..|+|||||++|++. +++||||+++ ++++++++++
T Consensus 386 ~G~m~~~~~-~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~-~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l 463 (938)
T TIGR00395 386 TGVMIYNIP-PYKGMKVSEAKEKVKADLIDAGLADVMYEFS-ESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECL 463 (938)
T ss_pred CceeccCCc-ccCCcCHHHhHHHHHHHHHHCCCceEeeecC-CCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHH
Confidence 467788888 8999999999999999999999999876653 358899999999987 9999999999 5999999999
Q ss_pred hccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCc---ceeccCchhhhccCCCCcceEEecCHHHHHHHHh
Q 001757 534 MDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDELKELGSYNDHWIVARDEKEALAVAN 610 (1017)
Q Consensus 534 ~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 610 (1017)
++++|+|+..++++.+||+|++||||||||+||||||+ |.+. .+++++.|+.++..++.....
T Consensus 464 -----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ie----slsdstiY~~~~~i~~~l~~~----- 529 (938)
T TIGR00395 464 -----EGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIE----SLSDSTIYMAYYTIAHYLNKD----- 529 (938)
T ss_pred -----hcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEee----ecchhhhhhhhccHHHHhhcc-----
Confidence 57999999999999999999999999999999999994 4442 123344454433332221100
Q ss_pred hhcCCCccccccCCCcEEEEeccCccccccccCCCC-----ChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCC
Q 001757 611 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVP 685 (1017)
Q Consensus 611 ~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~-----~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~P 685 (1017)
.++.. ...++++|+||+++..+ ...|||.. +.+|++|||+|++++|+||++||...+++++.++.+..|
T Consensus 530 -~~~~~----~l~~ev~D~~~~~~~~~-~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~ 603 (938)
T TIGR00395 530 -YYGNE----QMTDEFFDYIFLGKGDV-KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKF 603 (938)
T ss_pred -CCChH----HCCcccCceEEECCCCh-hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccc
Confidence 01100 12468999999865444 34477753 468999999999999999999999999999888888766
Q ss_pred c-eEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHH
Q 001757 686 F-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRF 764 (1017)
Q Consensus 686 f-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~ 764 (1017)
| +.|++||||++ +|+|||||+||||+|.++|+ +||+|++||
T Consensus 604 ~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~-------------------------------------~yGaDalRl 645 (938)
T TIGR00395 604 WPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVE-------------------------------------KFGADVARL 645 (938)
T ss_pred cCcEEEEeceEEe-CCccccCcCCCCCCHHHHHH-------------------------------------HcChHHHHH
Confidence 6 99999999996 89999999999999999999 899999999
Q ss_pred HHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccC
Q 001757 765 ALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSY 844 (1017)
Q Consensus 765 ~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~ 844 (1017)
||++.++.++|++|+.+.+.+.+++++++||++++++.... +... ...+..|+||+++++.+++++.++|++|
T Consensus 646 ~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~----~~~~---~~~~~~D~wlls~l~~~i~~v~~a~e~~ 718 (938)
T TIGR00395 646 YIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN----LETG---EETSFIDRWLESRMNAAIKETYEAMENF 718 (938)
T ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc----cCCC---ccCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99998889999999999999999999999999998765432 1100 1245789999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCC
Q 001757 845 EFSDAA-STVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC 923 (1017)
Q Consensus 845 ~f~~a~-~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~ 923 (1017)
+|+.|+ ..+++|+ ..||+|++..++ ....+|+.+++.+++||||||||+|||||+.|+.
T Consensus 719 ~~~~Al~~~l~~~~--~~~n~Yl~~~~~--------------~~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~---- 778 (938)
T TIGR00395 719 QTRKAVKYALFDLQ--ADVDWYRRRGGV--------------NHKDVLARYLETWIKLLAPFAPHFAEEMWEEVGN---- 778 (938)
T ss_pred CHHHHHHHHHHHHH--HHHHHHHHhCcc--------------hHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC----
Confidence 999999 6789996 348999885321 1234899999999999999999999999999964
Q ss_pred CCCCCeeecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCcceEEEEecCcchHHHHH
Q 001757 924 ATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQK--NERLPAIAFCQTKGVSEIIR 992 (1017)
Q Consensus 924 ~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i--~~~~~~~i~~~~~~~~~~l~ 992 (1017)
.+||+.++||++++.+.|+.++..++.++++++++|++ . ++ +....+.|.+.++...+.++
T Consensus 779 --~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~iR~~---~---~~~~~~p~~~~i~~~~~w~~~~~~ 841 (938)
T TIGR00395 779 --EGFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRDIQEI---A---KIDASKPKRVYLYTSEDWKSQCLK 841 (938)
T ss_pred --CCeEEecCCCCCCcccCCHHHHHHHHHHHHHHHHHHHh---h---ccCCCCCcEEEEEECcHHHHHHHH
Confidence 36999999999999899999999999999999888885 3 33 33446677776654444443
No 20
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=2.2e-145 Score=1316.22 Aligned_cols=562 Identities=41% Similarity=0.748 Sum_probs=489.7
Q ss_pred HHHHHHHHcCCcccC--CCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHH
Q 001757 155 SWYSWWENSGYFIAD--NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVV 232 (1017)
Q Consensus 155 ~w~~~W~~~~~f~~~--~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~v 232 (1017)
+||++|+++++|+.. ..+++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||||||||.+|
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 699999999999988 446788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 233 EKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 233 Ek~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
|++++.+.+++++++|+++|++.|++|++++.+.|++||++||+++||+|+|+||||.|+++|+|+|.+|+++|||||+.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 99987777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcc-eEEEeeccccccccCcEEEEcCC-
Q 001757 313 RLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG-EIVVATTRVETMLGDTAIAIHPE- 390 (1017)
Q Consensus 313 ~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~-~i~v~TTrPeTl~g~tavaV~P~- 390 (1017)
+||+|||+|+|+|||+||+|++.. +..++++|++.+++. +|+|||||||||+||+||||||+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~ 224 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVK----------------SPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDF 224 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEE----------------EEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTS
T ss_pred CCCCcCcccccchhhhhccccccc----------------CceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCc
Confidence 999999999999999999998876 455679999987765 99999999999999999999999
Q ss_pred ----------------------------CcccccccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHH
Q 001757 391 ----------------------------DARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDV 442 (1017)
Q Consensus 391 ----------------------------d~ry~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~ 442 (1017)
+.++++|+|++|.|||+++.+|||++++ |++++|||+||+|||||++||++
T Consensus 225 ~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~vi~~~~-V~~~~GTGiV~~~Pah~~~Dy~~ 303 (601)
T PF00133_consen 225 DYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKELVGLKYIHPLTGREVPVIPDDF-VDMDKGTGIVHSAPAHGPDDYEI 303 (601)
T ss_dssp EEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHHHTTSEEE-TTSSSSEEEEEETT-S-SSSTTSEEEE-TTT-HHHHHH
T ss_pred cceeCCeeehHHHHHHHHHHhhhhhcccccCcceecCcEeccccccceeEEEcccc-cccccchhhhhhcccCCHHHHHH
Confidence 7789999999999999999999999995 99999999999999999999999
Q ss_pred HHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeec
Q 001757 443 GKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNC 522 (1017)
Q Consensus 443 ~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~ 522 (1017)
|++|+|+++++||++|++++++| +|.||++++||+.|++.|+++|++++.+++.|+||+|||||++|++++++||||++
T Consensus 304 ~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~ 382 (601)
T PF00133_consen 304 GKKHNLPIINPIDEDGRFTEEAG-KFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKY 382 (601)
T ss_dssp HHHHHHCCGCCCCCTSTBBSCCS-TTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEH
T ss_pred HhhcCceeeEecCCCceEeeccc-ccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEec
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCc-ceEEecC
Q 001757 523 NSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYND-HWIVARD 601 (1017)
Q Consensus 523 ~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~-~w~~~~~ 601 (1017)
+++++++++++ ++|+|+|+..+++|.+||++++|||||||||||||||+|+|+.+++..... +. .++....
T Consensus 383 ~~~k~~~l~~~-----~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~---~~~~~~~~~~ 454 (601)
T PF00133_consen 383 DDWKKKALEAL-----EKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIE---STIELIADRV 454 (601)
T ss_dssp HHHHHHHHHHH-----HTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEECCG---GHHHHHHHHS
T ss_pred HHhHHHHHhhc-----ccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCccccccc---cccccccccc
Confidence 99999999999 599999999999999999999999999999999999999998764321100 00 0000000
Q ss_pred HHHHH-----HHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCC-ChhhhhhCCccccceeecccchHHHHHHH
Q 001757 602 EKEAL-----AVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVM 675 (1017)
Q Consensus 602 ~~~~~-----~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~~~~ 675 (1017)
..... ..+...++.++..++|++||||||||||++|+++++||.+ +.+|++|||+|++++|+||+|+|+++|++
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~ 534 (601)
T PF00133_consen 455 EKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLF 534 (601)
T ss_dssp THHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHH
T ss_pred ccccccccccccccccccccccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHh
Confidence 00000 0112234556677999999999999999999999999986 78999999999999999999999999999
Q ss_pred HHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCC
Q 001757 676 LGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIP 755 (1017)
Q Consensus 676 ~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~ 755 (1017)
++.+++++.||++|++||||+|.+|+|||||+||||+|.++|+
T Consensus 535 ~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~------------------------------------- 577 (601)
T PF00133_consen 535 LSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIE------------------------------------- 577 (601)
T ss_dssp HHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHH-------------------------------------
T ss_pred hccccccCCchheeeecccccccceeecccCCCcccCHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhccCCCcccccc
Q 001757 756 ECGTDALRFALVSYTAQSDKINLD 779 (1017)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~ 779 (1017)
+||||+||||++++++.++|++||
T Consensus 578 ~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 578 KYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp HT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred HhCcHHHHHHHHhcCCcccCcccC
Confidence 999999999999889999999996
No 21
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-140 Score=1203.52 Aligned_cols=795 Identities=22% Similarity=0.335 Sum_probs=664.0
Q ss_pred CCCCcCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC-CCCCcEEEECCCCCCCCCCCcchhHHHHH
Q 001757 122 NAEEFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAI 200 (1017)
Q Consensus 122 ~~~~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~-~~k~~f~i~~pPPy~nG~LHiGHal~~~i 200 (1017)
-....++|+| +.+.|... .+.+..+-|....++..... ..++.|++++ +||.||||||+|+++
T Consensus 17 ys~T~~lpKt--~v~~Ns~g----------r~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkIL 80 (937)
T KOG0433|consen 17 YSITSHLPKT--LVHFNSTG----------RIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKIL 80 (937)
T ss_pred ceeecCCCCC--cccccccc----------chHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHH
Confidence 4456789999 77766653 44556666666666655443 4567999999 999999999999999
Q ss_pred HHHHHHHHHhCCCeeeeecccCccChhHHH-HHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 001757 201 QDTIIRWRRMSGYNALWVPGMDHAGIATQV-VVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLD 279 (1017)
Q Consensus 201 ~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~-~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~D 279 (1017)
+||+.||+.++|++|+|+|||||||||+|. .+-+.+..+. ..++.-+.+++++.++++-++++++.|+|||++.|
T Consensus 81 kdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~----~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aD 156 (937)
T KOG0433|consen 81 KDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESE----GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTAD 156 (937)
T ss_pred HHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhcc----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeecc
Confidence 999999999999999999999999999994 5544442222 34666788999999999999999999999999999
Q ss_pred cCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEe
Q 001757 280 WSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFA 359 (1017)
Q Consensus 280 W~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~ 359 (1017)
|.++|.||||+|+.++.++|.+|+++|||||+++||+|||+.+|||++.|+||.+.+..+ -.||+
T Consensus 157 W~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~---------------S~Y~~ 221 (937)
T KOG0433|consen 157 WENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQST---------------SAYFR 221 (937)
T ss_pred CCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcce---------------eEEEE
Confidence 999999999999999999999999999999999999999999999999999999887654 23566
Q ss_pred eecCC------------CcceEEEeeccccccccCcEEEEcCCCcc-------------c--------------------
Q 001757 360 YPLEG------------GLGEIVVATTRVETMLGDTAIAIHPEDAR-------------Y-------------------- 394 (1017)
Q Consensus 360 ~~l~~------------~~~~i~v~TTrPeTl~g~tavaV~P~d~r-------------y-------------------- 394 (1017)
|||.+ ...+++||||+|||||+|.||||||+..+ |
T Consensus 222 F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i 301 (937)
T KOG0433|consen 222 FKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKI 301 (937)
T ss_pred EeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceee
Confidence 66643 13689999999999999999999998541 1
Q ss_pred ------ccccCCeeecCCC-CCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCC
Q 001757 395 ------SHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLE 467 (1017)
Q Consensus 395 ------~~L~G~~~~~P~~-~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~ 467 (1017)
.+|.|.+|.||+. +..+|++.++ ||+++.|||+||+|||||++||.+|.++||++.+++|++|+++.++|+.
T Consensus 302 ~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~-hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~ 380 (937)
T KOG0433|consen 302 VGTVKGANLIGRRYKHPLHNELGLPILEGP-HVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHD 380 (937)
T ss_pred eeecchhhccCceecCcCccccCCcccccc-ceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccc
Confidence 2688999999975 4679999999 5999999999999999999999999999999999999999999999989
Q ss_pred CCCCChhh-HHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEecc
Q 001757 468 FEGMPRFK-AREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPR 546 (1017)
Q Consensus 468 f~G~~~~~-ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~ 546 (1017)
+.|+.|.+ ..+.|+..|. ..+++.+++.|+||++|||++|++.|.++|||+++++++..|.+++ ++|+|+|.
T Consensus 381 l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al-----~~Vk~~P~ 453 (937)
T KOG0433|consen 381 LDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMAL-----DDVKVAPG 453 (937)
T ss_pred cccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHH-----hhceeCCc
Confidence 99999886 5678888888 7788999999999999999999999999999999999999999999 78999999
Q ss_pred ccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhc-----------cCCCCcceEEecCHHHHHHHHhhhcCC
Q 001757 547 QYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-----------LGSYNDHWIVARDEKEALAVANKKFSG 615 (1017)
Q Consensus 547 ~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~-----------~~~~~~~w~~~~~~~~~~~~~~~~~~~ 615 (1017)
...+++..+|..+++|||||||.||+|||++|....+..+.. ...+.+.|+....++-..++.-...|.
T Consensus 454 ~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~ 533 (937)
T KOG0433|consen 454 DSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPD 533 (937)
T ss_pred chHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccch
Confidence 999999999999999999999999999999998765543211 123346777665543322222223333
Q ss_pred CccccccCCCcEEEEeccCccccccccCCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEccee
Q 001757 616 KKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMI 695 (1017)
Q Consensus 616 ~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v 695 (1017)
....+.+++|+||||||||..+-++++- +.-.++|++.+|.||+||||+++++++++..+++||++|++|||+
T Consensus 534 ~a~ey~kgtDimDVWFDSGssWs~v~~~-------~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFt 606 (937)
T KOG0433|consen 534 IASEYKKGTDIMDVWFDSGSSWSAVLDN-------EREHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFT 606 (937)
T ss_pred hHHHhccCCceeeeEecCCCcceeecCC-------CCCcceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeE
Confidence 4456888999999999999988777752 223578999999999999999999999999999999999999999
Q ss_pred eCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCcc
Q 001757 696 RDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDK 775 (1017)
Q Consensus 696 ~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~D 775 (1017)
+|++|.|||||+||||||..||+|- ..-|.||||+||||++. +....|
T Consensus 607 lDE~G~KMSKSlGNVidP~~v~~G~-------------------------------~k~payGaD~LR~WVA~-~~~t~d 654 (937)
T KOG0433|consen 607 LDENGNKMSKSLGNVVDPTMVTDGS-------------------------------LKQPAYGADGLRFWVAG-SENTGE 654 (937)
T ss_pred ecCCccchhhcccCcCCHHHHhCCc-------------------------------ccCCCccccceeeeeec-ccccCc
Confidence 9999999999999999999999961 11358999999999885 555569
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC-CCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Q 001757 776 INLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPP-LKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVY 854 (1017)
Q Consensus 776 inf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~-~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~ 854 (1017)
+....+.+.....-+.|++|++||+++|+.+ |++. ..++...+..+|+++|.+|+.+++++.+.|++|+|+++++.+.
T Consensus 655 ~~iGp~il~qv~e~l~K~R~T~RfllGnl~d-~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq 733 (937)
T KOG0433|consen 655 SKIGPKILDQVDEKLIKFRNTFRFLLGNLQD-FDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQ 733 (937)
T ss_pred eecCHHHHHHHHHHHHHHHhHHHHHhhcccc-cCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999999986 7665 4566678889999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHHhhcccccCC--CcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeec
Q 001757 855 SWWQYQFCDVFIEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLC 932 (1017)
Q Consensus 855 ~f~~~~l~~~Yle~~K~~l~~~--~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~ 932 (1017)
.|+.++|+++|++++|++||++ ++. .|+++|+||+++|..+++.++||+||++||+||+||... +-++..
T Consensus 734 ~F~~~~lSa~YfdivKDRLY~~~~~s~---~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~-----~~~f~~ 805 (937)
T KOG0433|consen 734 QFLQRNLSAFYFDIVKDRLYCDKVGSE---SRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSH-----EKIFRL 805 (937)
T ss_pred HHHHHHhhHHHHHHHhhhhhcCCCCcH---HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCCC-----Cccccc
Confidence 9999999999999999999998 454 899999999999999999999999999999999999432 229999
Q ss_pred CCCCCCCCCCChHHHHH--HHHHHHHHHHHHHHHHHhccC-CCCCcceEEEEecCc-----chHHHHHHhHHHHHHhhcc
Q 001757 933 EYPSAVEGWTDERAEFE--MDLVESTVRCIRSLRAEVLGK-QKNERLPAIAFCQTK-----GVSEIIRSHELEIVTLSTS 1004 (1017)
Q Consensus 933 ~~P~~~~~~~~~~~e~~--~~~v~~i~~~iRslr~~~~~k-~i~~~~~~~i~~~~~-----~~~~~l~~~~~~I~~l~~v 1004 (1017)
.||..++.|..+..+.. +..+.++....-+......+. .++...+++.....+ ++.++++.+..++..+.+.
T Consensus 806 k~~~l~s~~~~~~~~~~~~~~~vl~~~~~~~~~l~la~~~~~~~s~L~~~~~~ht~~~~~~~L~~~l~~~~~~~~~~~~~ 885 (937)
T KOG0433|consen 806 KWEDLHSGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYHTIRIYESELPELLNVSQVILHENRDE 885 (937)
T ss_pred CccccchhhcCchhHHHHHHHHHHHHHHhHHHHHHhhhhhhhccceEEEEEeecccccchhHHHHHHHHhhhhhhhhhcc
Confidence 99999999988776655 555566554443332222111 234455555443332 3334444555555555444
Q ss_pred CcE
Q 001757 1005 SSL 1007 (1017)
Q Consensus 1005 ~~v 1007 (1017)
..+
T Consensus 886 ~~~ 888 (937)
T KOG0433|consen 886 NSV 888 (937)
T ss_pred cch
Confidence 333
No 22
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-138 Score=1299.75 Aligned_cols=701 Identities=25% Similarity=0.381 Sum_probs=587.3
Q ss_pred CCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHH---------H-hcCCccccChHHHHHHHHHH
Q 001757 190 LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMR---------E-RKLTRHDIGREQFVSEVWKW 259 (1017)
Q Consensus 190 LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~---------~-~~~~~~~~g~e~f~~~~~~~ 259 (1017)
||||||+|++++|+++||+||+||+|+|++||||||+||+.+||+.... + .|+++.++ ++| ..|++|
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f-~~~~~~ 77 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKF-KDPEYI 77 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHh-cCHHHH
Confidence 7999999999999999999999999999999999999999999863210 0 13333333 345 347999
Q ss_pred HHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCCCce
Q 001757 260 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKRE 339 (1017)
Q Consensus 260 ~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~~~t 339 (1017)
+++|.+.+++||++||+|+||+|+|+||||.|+++|+|+|.+|+++||||||.++|+|||.|+|+|||+||++.+..++
T Consensus 78 ~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~- 156 (897)
T PRK12300 78 VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEI- 156 (897)
T ss_pred HHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987533221
Q ss_pred eEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCc---------------------ccc---
Q 001757 340 MRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDA---------------------RYS--- 395 (1017)
Q Consensus 340 ~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~---------------------ry~--- 395 (1017)
+.+++++|+ .+++.+|+|||||||||+|||||||||+++ +|+
T Consensus 157 -------------~~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~ 222 (897)
T PRK12300 157 -------------VEYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRD 222 (897)
T ss_pred -------------ceEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCC
Confidence 334556776 555678999999999999999999999997 354
Q ss_pred ----------cccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhC--------Cceeeee---
Q 001757 396 ----------HLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHN--------LEFINIF--- 454 (1017)
Q Consensus 396 ----------~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~--------L~~i~ii--- 454 (1017)
+|+|++|.|||.++.+||+++++ |++++|||+||+|||||++||+++++++ |++++++
T Consensus 223 ~~~~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~-V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~ 301 (897)
T PRK12300 223 VEIIEEIKGSELIGKKVKNPVTGKEVPILPADF-VDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVE 301 (897)
T ss_pred ceEEEEeehHHhcCCEEECCCCCCeEEEeccCe-eecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecC
Confidence 79999999999999999999995 9999999999999999999999999998 7766555
Q ss_pred --------------------C---------------CCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccccccccc
Q 001757 455 --------------------T---------------DDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMR 499 (1017)
Q Consensus 455 --------------------d---------------~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~ 499 (1017)
| .+|+|++++| +|+|+++++||+.|++.|+++|++++..+++|
T Consensus 302 ~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g-~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~- 379 (897)
T PRK12300 302 GYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTG-EYAGKPVREAREKITKDLIEKGIADIMYEFSN- 379 (897)
T ss_pred CcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeeccc-CcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-
Confidence 3 4899999888 99999999999999999999999999888888
Q ss_pred ccccccCCCeeeeec-cccceeecc--hHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCc
Q 001757 500 LGLCSRSNDVVEPMI-KPQWYVNCN--SMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA 576 (1017)
Q Consensus 500 ~p~c~Rs~~~i~~~~-~~QWFi~~~--~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~ 576 (1017)
+|+|||||++|++++ ++||||+++ ++++++++++ ++|+|+|+++++++.+||+|++||||||||+||||||+
T Consensus 380 ~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~-----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~ 454 (897)
T PRK12300 380 RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKAL-----DNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPW 454 (897)
T ss_pred CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHH-----ccCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCc
Confidence 578889999999875 699999998 7999999998 68999999999999999999999999999999999995
Q ss_pred ---ceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccc---cccccCCCC----
Q 001757 577 ---WYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFP---LSVLGWPDD---- 646 (1017)
Q Consensus 577 ---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p---~s~lg~p~~---- 646 (1017)
|.++. +.+++.|+.++.+++..++ ++...-.+ .++++|+||.++..+ ....|||.+
T Consensus 455 ~~~w~~es----l~ds~iY~~~~~i~~~l~~--------~g~~~~~l--~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~ 520 (897)
T PRK12300 455 DEEWIIES----LSDSTIYMAYYTIAHKIRE--------YGIKPEQL--TPEFFDYVFLGKGDPEEVSKKTGIPKEILEE 520 (897)
T ss_pred cCCEEeee----ccccchhhhHHHHHHHHHH--------cCCChHHC--ChhhCceEEeCCCccccCchhcCCCHHHHHH
Confidence 55432 2233444333222211111 11000011 245666666543222 123345543
Q ss_pred -ChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCc-eEEEEcceeeCCCCccccccCCcccCccccccccchhh
Q 001757 647 -TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1017)
Q Consensus 647 -~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pf-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~ 724 (1017)
+.+|++|||+|++++|+||++||..++++++.++.+..|| ++|++||||++ +|+|||||+||||+|.++|+
T Consensus 521 ~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~------ 593 (897)
T PRK12300 521 MREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIE------ 593 (897)
T ss_pred HHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHH------
Confidence 4679999999999999999999988889999999998888 99999999998 89999999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001757 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 804 (1017)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l 804 (1017)
+||+|+|||||++.++.++|++|+.+.+.+++++++++||+++++.+..
T Consensus 594 -------------------------------~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~ 642 (897)
T PRK12300 594 -------------------------------EYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIG 642 (897)
T ss_pred -------------------------------HcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999889999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHH
Q 001757 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASER 884 (1017)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r 884 (1017)
. . ..+...|+|++++++.+++.+.++|++|+|+.|++.++.|+++ .+|+|++.+++
T Consensus 643 ~-----~-----~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~-~~n~Yi~~~k~------------- 698 (897)
T PRK12300 643 G-----E-----EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLN-DLRWYLRRVGE------------- 698 (897)
T ss_pred C-----c-----cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHhcch-------------
Confidence 1 1 1345789999999999999999999999999999998877644 47999998764
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 001757 885 SAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLR 964 (1017)
Q Consensus 885 ~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~i~~~iRslr 964 (1017)
.++.+|+.+++.+++||+|||||+|||||+.|+. .+||+.+.||++++.+.|+.++..++.++++++.+|++|
T Consensus 699 -~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~------~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~ir~~~ 771 (897)
T PRK12300 699 -ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGG------EGFVSLEKWPEPDESKIDEEAELAEEYVKRLIEDIREIL 771 (897)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC------CCeEEeCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999974 369999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcceEEEEecCcchHHHHHHhHHHHHHhhccCcE
Q 001757 965 AEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSL 1007 (1017)
Q Consensus 965 ~~~~~k~i~~~~~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v 1007 (1017)
+.. +++. ..++|.+.++...+. .+.|....|++++
T Consensus 772 ~~~---~~~~-~~~~i~~~~~~~~~~----~~~~~~~~n~k~~ 806 (897)
T PRK12300 772 KVA---KIKP-KKVYIYVAPDWKYEV----LEIAAENGDVKEA 806 (897)
T ss_pred HHc---CCCC-ceEEEEECCHHHHHH----HHHHHHhhcHHHH
Confidence 988 6643 457776665544332 3334444444443
No 23
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-135 Score=1145.73 Aligned_cols=785 Identities=23% Similarity=0.385 Sum_probs=686.0
Q ss_pred hcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccc
Q 001757 144 AKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1017)
Q Consensus 144 ~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1017)
++.+|+..-|++..++|.+.+.|+...+ +++|+|.+.+|||++||.+|.||.|+.+|+|++.||..|+||.|-..+||
T Consensus 5 ~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGW 84 (1070)
T KOG0434|consen 5 PENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGW 84 (1070)
T ss_pred cccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeeccc
Confidence 4567777899999999999999997654 77899999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhcCCcc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHH
Q 001757 222 DHAGIATQVVVEKKLMRERKLTRH----DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTE 297 (1017)
Q Consensus 222 D~~Glpiq~~vEk~l~~~~~~~~~----~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~ 297 (1017)
||||+|+|..+.|+| |++.. .+|.+++..+|+..+..|...+++...|||-|+|+++.|.||+|.|++.|||
T Consensus 85 D~HGlPVE~eIDKkL----gI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWw 160 (1070)
T KOG0434|consen 85 DTHGLPVEYEIDKKL----GITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWW 160 (1070)
T ss_pred ccCCCccceeechhc----CCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHH
Confidence 999999998888876 55543 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCcEEEcceeeeecCCCCcccccccc--ccccCCCceeEeccCccccceeeeeeeEeeecCC-CcceEEEeec
Q 001757 298 AFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEG-GLGEIVVATT 374 (1017)
Q Consensus 298 ~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EV--e~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~-~~~~i~v~TT 374 (1017)
+|.+||++|+||||.+.++||..|.|+|||.|- .|+|+.+++.+ +.||+.+ ....++.|||
T Consensus 161 vFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~----------------v~F~li~~~~~slvAWTT 224 (1070)
T KOG0434|consen 161 VFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVF----------------VAFPLIGDPNVSLVAWTT 224 (1070)
T ss_pred HHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEE----------------EEeeccCCcceeEEEEec
Confidence 999999999999999999999999999999988 58999988643 5677654 3568999999
Q ss_pred cccccccCcEEEEcCCCcc----------------------c----------------ccccCCeeecCCC-------CC
Q 001757 375 RVETMLGDTAIAIHPEDAR----------------------Y----------------SHLHGKFAIHPFN-------GR 409 (1017)
Q Consensus 375 rPeTl~g~tavaV~P~d~r----------------------y----------------~~L~G~~~~~P~~-------~~ 409 (1017)
+|||||+|.|+||||+..+ | +.|.|+.|..+|. ..
T Consensus 225 TPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~ 304 (1070)
T KOG0434|consen 225 TPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEG 304 (1070)
T ss_pred CCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccC
Confidence 9999999999999999531 1 3688999987763 34
Q ss_pred ccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCC-----ceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001757 410 KIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-----EFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1017)
Q Consensus 410 ~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L-----~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L 484 (1017)
...|+.|+| |+.+.|||+||++||.|+.||.+|..+|+ -++|+||++|+++.+.. .|+|..+.||.+.||+.|
T Consensus 305 aFrvl~d~y-Vt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~-dfaG~YVKDaDK~Ii~~l 382 (1070)
T KOG0434|consen 305 AFRVLSDDY-VTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVT-DFAGQYVKDADKLIIRSL 382 (1070)
T ss_pred ceEEeccCc-EecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccc-cccceeeccchHHHHHHH
Confidence 678999996 99999999999999999999999999886 46899999999999998 999999999999999999
Q ss_pred HHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccH-HHHHHHHhhccCcc
Q 001757 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYT-AEWRRWLEAIRDWC 563 (1017)
Q Consensus 485 ~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~-~~~~~wl~~l~DWc 563 (1017)
++.|.++....+.|+||+||||.+|+++++.|.||+++.++.+++++.. .+..|+|...+ ++|.|||+|.+||.
T Consensus 383 k~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn-----~~t~WVP~~ikeKRF~NWL~nARDW~ 457 (1070)
T KOG0434|consen 383 KASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNN-----MKTHWVPQNIKEKRFANWLKNARDWN 457 (1070)
T ss_pred HhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcc-----cccccCChhhhHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999999999999854 78999999875 79999999999999
Q ss_pred ceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHh-------------hhcCC--CccccccCCCcEE
Q 001757 564 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVAN-------------KKFSG--KKFEMCQDPDVLD 628 (1017)
Q Consensus 564 ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-------------~~~~~--~~~~~~~~~dVlD 628 (1017)
|||+|+||+|||.|..++-. ..-++| +..+..+... ...|. .+..++|.++|+|
T Consensus 458 iSRnR~WGTPIpLWVSdD~e----------evVcig-Si~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfD 526 (1070)
T KOG0434|consen 458 ISRNRYWGTPIPLWVSDDYE----------EVVCIG-SIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFD 526 (1070)
T ss_pred cccccccCCCcceEEccCCc----------eEEEec-cHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhh
Confidence 99999999999999764321 111121 2222221111 01232 2356899999999
Q ss_pred EEeccCccccccccCCCC-ChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccC
Q 001757 629 TWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSL 707 (1017)
Q Consensus 629 tWFdSgl~p~s~lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSl 707 (1017)
+||.||.||++..+||.+ ++.|+.-||+|+..+|-||+||||+.++.+|.+|+|++||++|+|+|+|+.++|+|||||+
T Consensus 527 CWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrl 606 (1070)
T KOG0434|consen 527 CWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRL 606 (1070)
T ss_pred hhhccCCCcchhhcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhh
Confidence 999999999999999995 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccC-CCccccccHHHHHH-
Q 001757 708 GNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTA-QSDKINLDIQRVVG- 785 (1017)
Q Consensus 708 GNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~-~~~Dinf~~~~v~~- 785 (1017)
.|.-||..||+ +|||||||+||+++.. ..+.+.|..+.+..
T Consensus 607 kNYPdP~~iin-------------------------------------kYGADalRlYLInSPVvraE~LkFkeeGVrev 649 (1070)
T KOG0434|consen 607 KNYPDPSLIIN-------------------------------------KYGADALRLYLINSPVVRAENLKFKEEGVREV 649 (1070)
T ss_pred hcCCCHHHHHH-------------------------------------hhcchheeeeeecCccccccccccchhhHHHH
Confidence 99999999999 9999999999997543 46788999988865
Q ss_pred HHHHHHHHHHHHHHHHhhhC-------CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 001757 786 YRQWCNKLWNAVRFSMSKLG-------EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQ 858 (1017)
Q Consensus 786 ~r~f~nkl~N~~rf~l~~l~-------~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~ 858 (1017)
....+-.+||++||+.+|.. ..|.+...+ ...+.+|+||++..+.++.-+.+-|++|++..++-.+..|+
T Consensus 650 vk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~--~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfi- 726 (1070)
T KOG0434|consen 650 VKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSV--TSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI- 726 (1070)
T ss_pred HHhhhhhhhHHHHHHHHHHHHhccccCCcccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHH-
Confidence 46678899999999988732 124433222 25578999999999999999999999999999999999997
Q ss_pred hhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCC----CCCCCCeeecCC
Q 001757 859 YQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKG----CATKESIMLCEY 934 (1017)
Q Consensus 859 ~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~----~~~~~SI~~~~~ 934 (1017)
.+|.||||...+.++.+++.. .+...|..+|+.+|-+++|+|+||+||+||.|||+|....+ .....|||...|
T Consensus 727 D~LTNwYiR~nRrrlkGe~G~--~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~ 804 (1070)
T KOG0434|consen 727 DELTNWYIRFNRRRLKGENGE--HDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSY 804 (1070)
T ss_pred HHhhhhheehhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeec
Confidence 999999999999999876432 15667899999999999999999999999999999964321 123579999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcce---EEEEecCcchHHHHHHhHHHHHHhhccCcEEEec
Q 001757 935 PSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP---AIAFCQTKGVSEIIRSHELEIVTLSTSSSLKRIS 1011 (1017)
Q Consensus 935 P~~~~~~~~~~~e~~~~~v~~i~~~iRslr~~~~~k~i~~~~~---~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~v~~ 1011 (1017)
|.+.++.+|+.+|..++.++.||..+|.+|... +|..+.+ +.|..+|++..+.+..+.+.|...+||.+|.+..
T Consensus 805 P~~~~~~~de~ve~~v~~m~siIdl~R~iRern---~islKtPLK~~ivi~~d~~~ledik~l~~yI~eElNVr~v~~~~ 881 (1070)
T KOG0434|consen 805 PTPKEELIDETVERRVERMQSIIDLARNIRERN---TISLKTPLKELIVIHSDEEYLEDIKSLERYILEELNVREVVFTS 881 (1070)
T ss_pred CCchhhhccchHHHHHHHHHHHHHHHHHHhhcc---CCcccCchhheEEEcCCHHHHHHHHHHHHHHHHhhcceeeeecc
Confidence 999999999999999999999999999999997 7744443 4555666777788888888899999999987654
No 24
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1.1e-134 Score=1255.62 Aligned_cols=644 Identities=28% Similarity=0.409 Sum_probs=535.9
Q ss_pred CCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccCh
Q 001757 147 YNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGI 226 (1017)
Q Consensus 147 y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Gl 226 (1017)
|||+++|++||++|+++++|++..+.++++|++++|||||||.||||||++++++|+++||+||+||+|+|++||||||+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl 80 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGL 80 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCCh
Confidence 89999999999999999999988767788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCC
Q 001757 227 ATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEG 306 (1017)
Q Consensus 227 piq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekG 306 (1017)
|||.++++ .|+++ ++|++++++.|++||++||+++||+|+|+||||.|.++++|+|.+|+++|
T Consensus 81 pie~~a~~-----~g~~p------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kG 143 (842)
T TIGR00396 81 PAENAAIK-----RGIHP------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKG 143 (842)
T ss_pred HHHHHHHH-----cCCCH------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 99988764 35554 48999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeecCCCCccccccccccccC---CCc---------eeEeccCccccce----------------------e
Q 001757 307 LIYRDLRLVNWDCVLRTAISDIEVDYVDI---PKR---------EMRNVPGYEKQVE----------------------F 352 (1017)
Q Consensus 307 lIYr~~~~V~wcp~~~TaLsd~EVe~~~~---~~~---------t~~~vp~y~~~~e----------------------~ 352 (1017)
+|||+.++|||||.|+|+|||+||++... .+. .+++++.|++.+. .
T Consensus 144 liy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~ 223 (842)
T TIGR00396 144 LAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGK 223 (842)
T ss_pred CeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccc
Confidence 99999999999999999999999954321 122 2566666653211 1
Q ss_pred eeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccc---------------------------------cccC
Q 001757 353 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYS---------------------------------HLHG 399 (1017)
Q Consensus 353 g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~---------------------------------~L~G 399 (1017)
+...+++|++.+++.+|+|||||||||+||+||||||+++++. .+.|
T Consensus 224 s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (842)
T TIGR00396 224 SEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTG 303 (842)
T ss_pred cceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecC
Confidence 2346678888876779999999999999999999999997532 2889
Q ss_pred CeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCC------------CCccccCCCCC
Q 001757 400 KFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD------------DGKINSNGGLE 467 (1017)
Q Consensus 400 ~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~------------~G~~~e~~g~~ 467 (1017)
++++||++++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++|++ +|++++ .| .
T Consensus 304 ~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~-~ 380 (842)
T TIGR00396 304 IKAIHPLTGEKIPIWVANY-VLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SG-E 380 (842)
T ss_pred CEEECCCCCCEeEEEEeCc-ccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-ch-h
Confidence 9999999999999999995 9999999999999999999999999999999999983 788874 47 8
Q ss_pred CCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccc
Q 001757 468 FEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQ 547 (1017)
Q Consensus 468 f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~ 547 (1017)
|.||.+++|++.|++.|+++|++.+ .+.+
T Consensus 381 ~~Gl~~~~A~~~Ii~~L~~~g~~~~-----------------------------------------------~v~y---- 409 (842)
T TIGR00396 381 FNGLNSSEAREAIIAMLEKEGKGKR-----------------------------------------------KVNY---- 409 (842)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCc-----------------------------------------------eEEe----
Confidence 9999999999999999999998521 1111
Q ss_pred cHHHHHHHHhhccCccceeecCCCCCcCcceeccCchh-hhc-----cCCCC-cceEEec-CHHHHHHHHhhhcCCCccc
Q 001757 548 YTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-LKE-----LGSYN-DHWIVAR-DEKEALAVANKKFSGKKFE 619 (1017)
Q Consensus 548 ~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~-~~~-----~~~~~-~~w~~~~-~~~~~~~~~~~~~~~~~~~ 619 (1017)
+++|||||||||||+|||+|||..|+.. .+. .-+.. ...-.+. ............||.|+..
T Consensus 410 ----------rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~ 479 (842)
T TIGR00396 410 ----------RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKP 479 (842)
T ss_pred ----------ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCC
Confidence 4789999999999999999999866531 110 00000 0000011 1122223334567777778
Q ss_pred cccCCCcEEEEeccCccccccccCCC------CChhhhhhCCccccceeecc--cchHHHHHHHHHh----hhcCCCCce
Q 001757 620 MCQDPDVLDTWFSSGLFPLSVLGWPD------DTDDLKAFYPTSVLETGHDI--LFFWVARMVMLGI----KLGGEVPFT 687 (1017)
Q Consensus 620 ~~~~~dVlDtWFdSgl~p~s~lg~p~------~~~d~~~~~P~dl~~~G~Di--l~fW~a~~~~~~~----~l~~~~Pfk 687 (1017)
++|++|||||||||| ||+..+.||. +++++++|||+|++++|.|+ +|+|++|+....+ .+.++.||+
T Consensus 480 ~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk 558 (842)
T TIGR00396 480 ALRETDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFK 558 (842)
T ss_pred cEeCCCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHH
Confidence 999999999999998 5555545554 45678999999999999985 4556665533222 257899999
Q ss_pred EEEEcceeeC----CCCc---------------------------cccccCCcccCccccccccchhhHHHHhhcCCCCh
Q 001757 688 KVYLHPMIRD----AHGR---------------------------KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDP 736 (1017)
Q Consensus 688 ~V~~Hg~v~D----~~G~---------------------------KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~ 736 (1017)
+|++||||+| ++|+ |||||+||+|+|.++|+
T Consensus 559 ~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~------------------ 620 (842)
T TIGR00396 559 KLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK------------------ 620 (842)
T ss_pred HHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH------------------
Confidence 9999999999 8999 99999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCC
Q 001757 737 KELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHP 816 (1017)
Q Consensus 737 ~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~ 816 (1017)
+||+|++|||+++.++..+|++|+.+.+++.++|+++|||+++++++++.+ +.. ...
T Consensus 621 -------------------~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~-~~~---~~~ 677 (842)
T TIGR00396 621 -------------------KHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDG-KTY---LTP 677 (842)
T ss_pred -------------------HcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc---CCc
Confidence 899999999999888888999999999999999999999999998877642 210 111
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHH
Q 001757 817 HNLPFSCKWILSVLNKAISRTASSLNSYE-FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCL 895 (1017)
Q Consensus 817 ~~~~~~Drwil~~L~~~i~~v~~a~e~~~-f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l 895 (1017)
..++..|+||+++|+.++++|+++|++|+ |+.|++++++|+ +++++. .. ..+|+.++
T Consensus 678 ~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~-n~L~~~------------------~~---~~~l~~~l 735 (842)
T TIGR00396 678 TILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILL-NALYKA------------------KK---DALYLEYL 735 (842)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHhh------------------hh---HHHHHHHH
Confidence 23467899999999999999999999998 999999999997 454431 00 13789999
Q ss_pred HHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCC
Q 001757 896 ETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEG 940 (1017)
Q Consensus 896 ~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~ 940 (1017)
+.+++||||||||+|||||+.|+.. ..||+.++||++++.
T Consensus 736 ~~ll~lLaPf~PhiaEElW~~l~~~-----~~sv~~~~wP~~d~~ 775 (842)
T TIGR00396 736 KGFLTVLSPFAPHLAEELWEKLGSE-----PFIIKQAKWPKVDET 775 (842)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhCCC-----CCeeecCCCCCCCHH
Confidence 9999999999999999999999741 258999999998754
No 25
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.9e-134 Score=1248.50 Aligned_cols=648 Identities=28% Similarity=0.427 Sum_probs=538.0
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccC
Q 001757 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1017)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D 222 (1017)
|.+.|+|.++|++||++|+++++|++..+.+ ++|++++|||||||.|||||+++++++|+++||+||+|++|+|++|||
T Consensus 1 ~~~~y~~~~iE~~w~~~W~~~~~f~~~~~~~-~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 79 (805)
T PRK00390 1 MMERYNPKEIEKKWQKYWEENKTFKTTEDSS-KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 79 (805)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCccCC-CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 3567999999999999999999999876544 379999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001757 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1017)
Q Consensus 223 ~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L 302 (1017)
|||+|||..+++ .|++ +++|++++++.|++||++||+++||+++|+||||+|.++++++|.+|
T Consensus 80 ~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 142 (805)
T PRK00390 80 AFGLPAENAAIK-----TGTH------------PAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKL 142 (805)
T ss_pred CCCCHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHH
Confidence 999999988764 3544 45899999999999999999999999999999999999999999999
Q ss_pred hhCCcEEEcceeeeecCCCCccccccccccc--cCCCce---------eEeccCccccc---------------------
Q 001757 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYV--DIPKRE---------MRNVPGYEKQV--------------------- 350 (1017)
Q Consensus 303 ~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~--~~~~~t---------~~~vp~y~~~~--------------------- 350 (1017)
+++|+|||+.++|+|||.|+|+|||+||++. ...+.. +++++.|++.+
T Consensus 143 ~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~w 222 (805)
T PRK00390 143 YEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNW 222 (805)
T ss_pred HHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhh
Confidence 9999999999999999999999999999742 222222 33444443211
Q ss_pred -eeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCccccc---------------------------------
Q 001757 351 -EFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSH--------------------------------- 396 (1017)
Q Consensus 351 -e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~--------------------------------- 396 (1017)
..+..++++|++.+++.+|+|||||||||+||+||||||+++++..
T Consensus 223 ig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 302 (805)
T PRK00390 223 IGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGV 302 (805)
T ss_pred ccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeee
Confidence 1234567889998777899999999999999999999999987543
Q ss_pred ccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCC--------------Ccccc
Q 001757 397 LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDD--------------GKINS 462 (1017)
Q Consensus 397 L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~--------------G~~~e 462 (1017)
|+|++|.||+.++++||+.+++ |++++|||+||+|||||++||++|++|||+++++||++ |++++
T Consensus 303 l~g~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~ 381 (805)
T PRK00390 303 FTGLYAIHPLTGEKIPVWIADY-VLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLIN 381 (805)
T ss_pred ecCcEEECCCCCCeeeEEEecc-ccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEe
Confidence 5899999999999999999995 99999999999999999999999999999999999854 44443
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceE
Q 001757 463 NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 542 (1017)
Q Consensus 463 ~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~ 542 (1017)
.| .|.|+.+++||+.|++.|+++|++. +.+.
T Consensus 382 -~~-~~~Gl~~~~a~~~Ii~~L~~~g~~~-----------------------------------------------~~v~ 412 (805)
T PRK00390 382 -SG-ELDGLDSEEAKEAIIAWLEEKGLGK-----------------------------------------------RKVN 412 (805)
T ss_pred -cc-ccCCCCHHHHHHHHHHHHHHcCCCC-----------------------------------------------CceE
Confidence 26 8999999999999999999999841 1222
Q ss_pred EeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchh-hhc--c---CC------CCcceEEecCHHHHHHHHh
Q 001757 543 LIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-LKE--L---GS------YNDHWIVARDEKEALAVAN 610 (1017)
Q Consensus 543 ~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~-~~~--~---~~------~~~~w~~~~~~~~~~~~~~ 610 (1017)
+ +++|||||||||||+|||+|||..|+.. .+. . -+ ..+.|. ..+..+..
T Consensus 413 ~--------------~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~ 473 (805)
T PRK00390 413 Y--------------RLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPL-----AKHPEWVN 473 (805)
T ss_pred E--------------ECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChh-----hhchhhhC
Confidence 2 4789999999999999999999766531 000 0 00 001111 11222233
Q ss_pred hhcCCCccccccCCCcEEEEeccCccccccccCCCC------ChhhhhhCCccccceeeccc-------chHHHHHHHHH
Q 001757 611 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD------TDDLKAFYPTSVLETGHDIL-------FFWVARMVMLG 677 (1017)
Q Consensus 611 ~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~------~~d~~~~~P~dl~~~G~Dil-------~fW~a~~~~~~ 677 (1017)
..|+.++..++|++|||||||||+ ||+..++||.+ +++|++|||+|++++|+|++ |||...|..++
T Consensus 474 ~~~~~~g~~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~ 552 (805)
T PRK00390 474 VTCPKCGKPARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLG 552 (805)
T ss_pred CCccccCCCceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhh
Confidence 456555567999999999999998 88888888863 56799999999999999965 45554444444
Q ss_pred hhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCC
Q 001757 678 IKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPEC 757 (1017)
Q Consensus 678 ~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~ 757 (1017)
+ +.++.||++|++|||| |||||+||||+|.++|+ +|
T Consensus 553 ~-~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~-------------------------------------~y 588 (805)
T PRK00390 553 L-VSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIE-------------------------------------KY 588 (805)
T ss_pred c-ccCCcchhhheecCcE------EeCCCCCCCCCHHHHHH-------------------------------------Hc
Confidence 4 4789999999999999 99999999999999999 89
Q ss_pred CchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q 001757 758 GTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRT 837 (1017)
Q Consensus 758 GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v 837 (1017)
|||++|||+++.++.++|++|+.+.+.+.++|++++||+++|.+++.. .+.+ .....|+|++++|+.+++++
T Consensus 589 gaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~-~~~~-------~~~~~D~~il~~l~~~i~~v 660 (805)
T PRK00390 589 GADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAG-ALDV-------AALSEDKELRRKLHKTIKKV 660 (805)
T ss_pred ChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhccc-ccCc-------ccChhhHHHHHHHHHHHHHH
Confidence 999999999988889999999999999999999999999999655432 1221 23468999999999999999
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhC
Q 001757 838 ASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1017)
Q Consensus 838 ~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L 917 (1017)
+++|++|+|+.|++.+++|+ ++++.+| + +.++.+|+.+++.+++||||||||+|||||+.|
T Consensus 661 ~~~~e~~~f~~ai~~l~~f~-n~lsk~~-~-----------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L 721 (805)
T PRK00390 661 TEDIERLRFNTAIAALMELV-NALYKAE-D-----------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKL 721 (805)
T ss_pred HHHHHcCCHHHHHHHHHHHH-HHHHHHH-H-----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHc
Confidence 99999999999999999997 5776665 1 135779999999999999999999999999999
Q ss_pred CCCCCCCCCCCeeecCCCCCCCCCCChHHHHHHHHHHHHHH
Q 001757 918 PQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVR 958 (1017)
Q Consensus 918 ~~~~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~i~~ 958 (1017)
+. .+||+.++||.+++.+. .+..++.+.+|++
T Consensus 722 ~~------~~sv~~~~wP~~~~~~~---~~~~~~~~iqing 753 (805)
T PRK00390 722 GH------EGSIANAPWPTADEAAL---VEDEVTIVVQVNG 753 (805)
T ss_pred CC------CCeeEecCCCCCCHHHh---hhhccEEEEEEcc
Confidence 74 36899999999876543 2334444444444
No 26
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.8e-133 Score=1245.77 Aligned_cols=642 Identities=26% Similarity=0.396 Sum_probs=532.0
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCC--CCCCCcEEEECCCCCCCCC-CCcchhHHHHHHHHHHHHHHhCCCeeeeec
Q 001757 143 MAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVP 219 (1017)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~--~~~k~~f~i~~pPPy~nG~-LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~p 219 (1017)
+++.|+|.+||++||++|+++++|++.. +.++|+|++++|||||||. |||||+++++++|+++||+||+||+|+|++
T Consensus 76 ~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~ 155 (963)
T PLN02563 76 AKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPM 155 (963)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccc
Confidence 5577999999999999999999999865 4578899999999999997 999999999999999999999999999999
Q ss_pred ccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHH
Q 001757 220 GMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAF 299 (1017)
Q Consensus 220 G~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F 299 (1017)
||||||||+|..+++ .|.+ +.+|+.++++.|++||++||+|+||+|+|+||||.|+++++|+|
T Consensus 156 G~D~~GlPiE~~a~~-----~g~~------------p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F 218 (963)
T PLN02563 156 GWDAFGLPAEQYAIE-----TGTH------------PKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIF 218 (963)
T ss_pred cccccCcHHHHHHHH-----cCCC------------hHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHH
Confidence 999999999876643 3544 34789999999999999999999999999999999999999999
Q ss_pred HHHhhCCcEEEcceeeeecCCCCccccccccccc--cCCCc---------eeEeccCccccceee---------------
Q 001757 300 VRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV--DIPKR---------EMRNVPGYEKQVEFG--------------- 353 (1017)
Q Consensus 300 ~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~--~~~~~---------t~~~vp~y~~~~e~g--------------- 353 (1017)
.+|+++|||||+.++|||||.|+|+||++||++. +..+. .+++++.|++.+.-+
T Consensus 219 ~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~ 298 (963)
T PLN02563 219 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQR 298 (963)
T ss_pred HHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999863 33333 355666666543321
Q ss_pred ------eeeeEeeecCC-----CcceEEEeeccccccccCcEEEEcCCCc---------------cccc-----------
Q 001757 354 ------VLTSFAYPLEG-----GLGEIVVATTRVETMLGDTAIAIHPEDA---------------RYSH----------- 396 (1017)
Q Consensus 354 ------~l~~~~~~l~~-----~~~~i~v~TTrPeTl~g~tavaV~P~d~---------------ry~~----------- 396 (1017)
...+++|++.+ .+.+|+|||||||||+|+++|||||+++ +|.+
T Consensus 299 nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~ 378 (963)
T PLN02563 299 NWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERT 378 (963)
T ss_pred HhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhh
Confidence 23567788765 2468999999999999999999999995 3321
Q ss_pred ---------ccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCC-----------
Q 001757 397 ---------LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD----------- 456 (1017)
Q Consensus 397 ---------L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~----------- 456 (1017)
+.|.+++||++++.+||+.+++ |++++|||+||+|||||++||++|++||||++++|+.
T Consensus 379 ~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~-V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~ 457 (963)
T PLN02563 379 ELQKEKTGVFTGSYAINPATGEAIPIWVADY-VLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKA 457 (963)
T ss_pred hccceecccccCcEEeccCCCCeeEEEEecc-cCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCcccccccccc
Confidence 4699999999999999999996 9999999999999999999999999999999999942
Q ss_pred ---CCccccCCC---CCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHH
Q 001757 457 ---DGKINSNGG---LEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEAL 530 (1017)
Q Consensus 457 ---~G~~~e~~g---~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al 530 (1017)
+|.+. |.| ..|.||.+++|++.|++.|+++|++.+
T Consensus 458 y~~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~-------------------------------------- 498 (963)
T PLN02563 458 YTGEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK-------------------------------------- 498 (963)
T ss_pred ccCceeEe-cCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC--------------------------------------
Confidence 24333 234 139999999999999999999998521
Q ss_pred HhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchhh-------hcc----C----CCCcc
Q 001757 531 YAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDEL-------KEL----G----SYNDH 595 (1017)
Q Consensus 531 ~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~-------~~~----~----~~~~~ 595 (1017)
.++| +++|||||||||||+|||+|||..|+... +.. . ...+.
T Consensus 499 ---------~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~ 555 (963)
T PLN02563 499 ---------KVNY--------------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGE 555 (963)
T ss_pred ---------eeEe--------------cCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCC
Confidence 2222 58999999999999999999998776311 100 0 01112
Q ss_pred eEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCCh------hhhhhCCccccceeeccc---
Q 001757 596 WIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD------DLKAFYPTSVLETGHDIL--- 666 (1017)
Q Consensus 596 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~------d~~~~~P~dl~~~G~Dil--- 666 (1017)
|. ......+....||.|+..++|++|||||||+|+++ +..+.||++++ .+++|||+|++++|.|+.
T Consensus 556 ~p----l~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy-~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailH 630 (963)
T PLN02563 556 PP----LAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWY-YLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLH 630 (963)
T ss_pred Cc----hhcchhhhcCcCcCCCCCcEECCCcCCchhhccHH-HHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhH
Confidence 21 11122334445777777899999999999999855 55567888532 346799999999999984
Q ss_pred ----chHHHHHHHHHhhhcCCCCceEEEEcceeeC---------CCCc--------------------------------
Q 001757 667 ----FFWVARMVMLGIKLGGEVPFTKVYLHPMIRD---------AHGR-------------------------------- 701 (1017)
Q Consensus 667 ----~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D---------~~G~-------------------------------- 701 (1017)
|||+.+|+++|+ +.++.||++|++||||+| ++|+
T Consensus 631 LlY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (963)
T PLN02563 631 LLYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVL 709 (963)
T ss_pred hHHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccccccccccc
Confidence 899999999999 578999999999999998 7888
Q ss_pred -------------cccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHh
Q 001757 702 -------------KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVS 768 (1017)
Q Consensus 702 -------------KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~ 768 (1017)
|||||+||||||.++|+ +||||+||||+++
T Consensus 710 ~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~-------------------------------------kYGADaLRl~ll~ 752 (963)
T PLN02563 710 KDDPSIRLIARAHKMSKSRGNVVNPDDVVS-------------------------------------EYGADSLRLYEMF 752 (963)
T ss_pred ccCCcccccccccccccccCCcCCHHHHHH-------------------------------------HcCcHHHHHHHHh
Confidence 99999999999999999 8999999999999
Q ss_pred ccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHH
Q 001757 769 YTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSD 848 (1017)
Q Consensus 769 ~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~ 848 (1017)
.++..+|++|+.+.+++.++|++++||++.....+. ..+.+.. . ......|+|++++|+.++++|+++|++|+|+.
T Consensus 753 ~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~-~~~~~~~-~--~~~~~~d~~ll~kl~~~ikkVte~~e~y~Fnt 828 (963)
T PLN02563 753 MGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPD-GSFRDGT-V--VTDEEPSLEQLRLLHKCIAKVTEEIESTRFNT 828 (963)
T ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcc-cccCccc-c--ccCCcchHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999986542111 1122111 0 11235799999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCC
Q 001757 849 AASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKES 928 (1017)
Q Consensus 849 a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~S 928 (1017)
|++++++|+ +.++++ . .+++.+++.+++||||||||+|||||++|+. .+|
T Consensus 829 Ai~~lmef~-n~l~~~------------------~-----~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~------~~s 878 (963)
T PLN02563 829 AISAMMEFT-NAAYKW------------------D-----KVPREAIEPFVLLLSPYAPHLAEELWFRLGH------SNS 878 (963)
T ss_pred HHHHHHHHH-HHHhCc------------------h-----HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCC------CCe
Confidence 999999997 444321 0 1346789999999999999999999999974 269
Q ss_pred eeecCCCCCCCCC
Q 001757 929 IMLCEYPSAVEGW 941 (1017)
Q Consensus 929 I~~~~~P~~~~~~ 941 (1017)
|+.++||++++.+
T Consensus 879 v~~~~WP~~d~~~ 891 (963)
T PLN02563 879 LAYEPWPEANPSY 891 (963)
T ss_pred eeeCCCCCCCHHH
Confidence 9999999987654
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-105 Score=958.75 Aligned_cols=649 Identities=27% Similarity=0.438 Sum_probs=509.9
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCCCC-CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccc
Q 001757 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSK-PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1017)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k-~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1017)
|...|+|.+||++||+.|+++++|+.+.+.++ +||++++|+|||||.|||||++||++.|+++||+||+|||||+++||
T Consensus 1 ~~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGw 80 (814)
T COG0495 1 MMSRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGW 80 (814)
T ss_pred CCcccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcc
Confidence 35679999999999999999999999887666 59999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001757 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1017)
Q Consensus 222 D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~ 301 (1017)
|++|+|++..+++. |.+ +..|+.++++.+++||++||+|+||+|++.|+||+|++++||+|.+
T Consensus 81 dafGlPae~~A~~~-----~~~------------P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~k 143 (814)
T COG0495 81 DAFGLPAENAAIKI-----GTD------------PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLK 143 (814)
T ss_pred cccCchHHHHHHHh-----CCC------------hHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHH
Confidence 99999998888753 443 4699999999999999999999999999999999999999999999
Q ss_pred HhhCCcEEEcceeeeecCCCCccccccccccc-------cCCCc----eeEeccCcccc-------ce------------
Q 001757 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV-------DIPKR----EMRNVPGYEKQ-------VE------------ 351 (1017)
Q Consensus 302 L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~-------~~~~~----t~~~vp~y~~~-------~e------------ 351 (1017)
|+++||||++..+|||||.|+|+|+|+||... .+..+ .++++..|++. ..
T Consensus 144 L~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~ 223 (814)
T COG0495 144 LYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQR 223 (814)
T ss_pred HHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHH
Confidence 99999999999999999999999999999743 22211 34677777521 11
Q ss_pred ----eeeeeeEeeecCCC--cceEEEeeccccccccCcEEEEcCCCcc---------------c----------------
Q 001757 352 ----FGVLTSFAYPLEGG--LGEIVVATTRVETMLGDTAIAIHPEDAR---------------Y---------------- 394 (1017)
Q Consensus 352 ----~g~l~~~~~~l~~~--~~~i~v~TTrPeTl~g~tavaV~P~d~r---------------y---------------- 394 (1017)
...-+.+.|.+.+. ...+.|+||||.|++|.+.+++.|+++. |
T Consensus 224 nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~ 303 (814)
T COG0495 224 NWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAH 303 (814)
T ss_pred cCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeecc
Confidence 01123455666554 4689999999999999999999999752 1
Q ss_pred ----ccccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCC-----------Cc
Q 001757 395 ----SHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDD-----------GK 459 (1017)
Q Consensus 395 ----~~L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~-----------G~ 459 (1017)
.-..|.+++||+.+..+||+.+++ |.+.+|||+||.+||||..||+.+++|+||+..+|... |.
T Consensus 304 ~~k~gv~~g~~a~~p~~~e~iPi~~a~~-vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~ 382 (814)
T COG0495 304 AEKDGVFLGGYAINPVNGEKIPVWIANY-VLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGV 382 (814)
T ss_pred CCCcceeccccccCCCCCCcCCEEEeCc-ccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCce
Confidence 013467889999999999999996 99999999999999999999999999999999888643 44
Q ss_pred cccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCC
Q 001757 460 INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1017)
Q Consensus 460 ~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~ 539 (1017)
+. |.| .|.|+...+|...++.. ++-....|||+++
T Consensus 383 li-nS~-~~~gl~~e~a~~~~~~~--------------------------l~~~~~~q~~v~Y----------------- 417 (814)
T COG0495 383 LI-NSG-GLDGLDYEEAKVKIRCG--------------------------LVKRGLGQWFVNY----------------- 417 (814)
T ss_pred Ee-ccc-cccCcchhHHHHHHHHh--------------------------HHHhcCCceEEec-----------------
Confidence 33 444 57888777664444433 3445567999987
Q ss_pred ceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceeccCchh------hhccCCCCcce-EEecCHHHHHHHHhhh
Q 001757 540 KLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELGSYNDHW-IVARDEKEALAVANKK 612 (1017)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~------~~~~~~~~~~w-~~~~~~~~~~~~~~~~ 612 (1017)
.++||++||||+||.|||+.+|+.|+.. ++...+..... -.+..+.-...+....
T Consensus 418 ------------------~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s 479 (814)
T COG0495 418 ------------------RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIES 479 (814)
T ss_pred ------------------ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEe
Confidence 4689999999999999999999877521 11100000000 0000111111122234
Q ss_pred cCCCccccccCCCcEEEEeccCccccccccC------CCCChhhhhhCCccccceeecccchHHHHHHHHHhhhc-----
Q 001757 613 FSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW------PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLG----- 681 (1017)
Q Consensus 613 ~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~------p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~----- 681 (1017)
||. .+..|+.||||+|++|+++++..+.. +..++.|++|||.|++++|.|..-.+.....+...+|.
T Consensus 480 ~~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~ 557 (814)
T COG0495 480 LPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLV 557 (814)
T ss_pred cCC--CceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcC
Confidence 544 56889999999999999877666532 33457899999999999998875444444444444442
Q ss_pred -CCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCch
Q 001757 682 -GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD 760 (1017)
Q Consensus 682 -~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaD 760 (1017)
...||++++++|||+-.+|+|||||+||||+|+++|+ +||||
T Consensus 558 p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~-------------------------------------~yGAD 600 (814)
T COG0495 558 PKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE-------------------------------------KYGAD 600 (814)
T ss_pred CCccchhhhhccceEEecCCCccccccCCCCCHHHHHH-------------------------------------HhCch
Confidence 3568999999999996589999999999999999999 99999
Q ss_pred HHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 001757 761 ALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASS 840 (1017)
Q Consensus 761 aLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a 840 (1017)
++|+|+++.++..+|++|+.+.+++.++|++++|+++.-......... .......|+|.+|++...+. +.
T Consensus 601 t~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~~~v~---~~ 670 (814)
T COG0495 601 TVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEEL-------TKEQGKEDRWLLHRTIKKVT---ED 670 (814)
T ss_pred HHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcccccc-------cchhhHHHHHHHHHHHHHHH---HH
Confidence 999999999999999999999999999999999998876543221100 01112678898777665555 55
Q ss_pred hcc-CCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCC
Q 001757 841 LNS-YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 841 ~e~-~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
+++ +.|+.|+..+|.|. ++ ...|...... . ..+|..+++.+++||+||+||+|||||+.|+.
T Consensus 671 ~e~~~~~nt~i~~~m~l~-N~-l~~~~~~~~~-----------~----~~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~ 733 (814)
T COG0495 671 FEARQTFNTAIAALMELL-NA-LRKYLRRTEG-----------D----RKVLREALETWVRLLAPFAPHIAEELWEELGN 733 (814)
T ss_pred HHHHHHHHHHHHHHHHHH-HH-HHHHHhcccc-----------h----HHHHHHHHHHHHHHhcccccHHHHHHHHHhcC
Confidence 555 89999999999984 33 3455433211 1 15888999999999999999999999999985
Q ss_pred CCCCCCCCCeeecCCCCCCCCCCCh
Q 001757 920 PKGCATKESIMLCEYPSAVEGWTDE 944 (1017)
Q Consensus 920 ~~~~~~~~SI~~~~~P~~~~~~~~~ 944 (1017)
.++|..++||++++...++
T Consensus 734 ------~~~v~~~~wP~~de~~l~~ 752 (814)
T COG0495 734 ------EGFVSNAPWPEPDEEALVE 752 (814)
T ss_pred ------CCceeeCCCCCCChhhccc
Confidence 2489999999999875543
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-98 Score=850.36 Aligned_cols=649 Identities=27% Similarity=0.397 Sum_probs=519.2
Q ss_pred hHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHH
Q 001757 151 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQV 230 (1017)
Q Consensus 151 ~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~ 230 (1017)
.||+.|.++|.+.-.|..+.+.++++ +|++++|||+|.|||||.+.|+|.|+++||+||+||+|+.++|||.+|||.|.
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAEN 112 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAEN 112 (876)
T ss_pred HHHHHHHHHHhcCCccccccccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhh
Confidence 79999999999988887666677788 78899999999999999999999999999999999999999999999999765
Q ss_pred HHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEE
Q 001757 231 VVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1017)
Q Consensus 231 ~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr 310 (1017)
++ .+.|+.+. .|+..+++.+++||++||+++||+|+..|++|+|+++.||+|.+||++||.|+
T Consensus 113 AA-----iergv~P~------------sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 113 AA-----IERGVHPA------------SWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred HH-----HhcCCCch------------hhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhc
Confidence 54 35677764 89999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeecCCCCccccccccccccCCCc------------eeEeccCccccce-------------------ee--eeee
Q 001757 311 DLRLVNWDCVLRTAISDIEVDYVDIPKR------------EMRNVPGYEKQVE-------------------FG--VLTS 357 (1017)
Q Consensus 311 ~~~~V~wcp~~~TaLsd~EVe~~~~~~~------------t~~~vp~y~~~~e-------------------~g--~l~~ 357 (1017)
...+|||||.++|+|+|++|+......| ++++++.|+++.. .| +-..
T Consensus 176 ~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~e 255 (876)
T KOG0435|consen 176 AEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAE 255 (876)
T ss_pred cccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceE
Confidence 9999999999999999999987665554 3677888875421 12 1235
Q ss_pred EeeecCCC---cceEEEeeccccccccCcEEEEcCCCcc------c------cccc------CCeeecCCCCCccceEec
Q 001757 358 FAYPLEGG---LGEIVVATTRVETMLGDTAIAIHPEDAR------Y------SHLH------GKFAIHPFNGRKIPIICD 416 (1017)
Q Consensus 358 ~~~~l~~~---~~~i~v~TTrPeTl~g~tavaV~P~d~r------y------~~L~------G~~~~~P~~~~~ipIi~~ 416 (1017)
+.|+|.++ ++.|.|+|||||||+|.+.+++.|++.. | .+|. +..+.||++++.+||+.+
T Consensus 256 l~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a 335 (876)
T KOG0435|consen 256 LMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVA 335 (876)
T ss_pred EEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEe
Confidence 67787543 4899999999999999999999999852 1 1222 346899999999999999
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHhCCceee----eeCCCCccccCCCCCCCC-CChhhHHHHHHHHHHHcCCcc
Q 001757 417 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFIN----IFTDDGKINSNGGLEFEG-MPRFKAREAVNEALKKKGLYR 491 (1017)
Q Consensus 417 ~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~----iid~~G~~~e~~g~~f~G-~~~~~ar~~Vi~~L~~~gl~~ 491 (1017)
++ |..-.|||+|+.+|+|+..|++++++-++..+. +++++|+.+++. .|.| +.+.+|+..|++.+.++|+..
T Consensus 336 ~~-v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~--~~tn~~~~q~a~~~l~~~~~~~g~g~ 412 (876)
T KOG0435|consen 336 DY-VLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQK--AFTNLDIRQNAALKLFQFAERKGVGG 412 (876)
T ss_pred ch-hccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccc--cccchhHHHHHHHHHHHHHHhcCCCc
Confidence 96 999999999999999999999999996665443 456788877654 5788 667778999999998888631
Q ss_pred ccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCC
Q 001757 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 571 (1017)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG 571 (1017)
.. +. ..++||.||||||||
T Consensus 413 ~~-----------------------------------------------vs--------------~kLkDWLiSRQRyWG 431 (876)
T KOG0435|consen 413 YV-----------------------------------------------VS--------------YKLKDWLISRQRYWG 431 (876)
T ss_pred ce-----------------------------------------------ec--------------chhhhhhhhhhhccC
Confidence 11 00 158899999999999
Q ss_pred CCcCcceeccCchh------hhccCC-CCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCC
Q 001757 572 HQIPAWYVTLEDDE------LKELGS-YNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1017)
Q Consensus 572 ~pIP~~~~~~~~~~------~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p 644 (1017)
+|||+.+|..|+.. ++...+ -++...-|.....+.++....||.|+...+|++|+||||+||+|+||..+. |
T Consensus 432 TPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylD-p 510 (876)
T KOG0435|consen 432 TPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLD-P 510 (876)
T ss_pred CCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecC-C
Confidence 99999999888641 121111 123334455556666677778888888999999999999999999999885 3
Q ss_pred CC------ChhhhhhCCcccccee--ecccchHHHHHHHHHhhh----cCCCCceEEEEcceeeCC------CC------
Q 001757 645 DD------TDDLKAFYPTSVLETG--HDILFFWVARMVMLGIKL----GGEVPFTKVYLHPMIRDA------HG------ 700 (1017)
Q Consensus 645 ~~------~~d~~~~~P~dl~~~G--~Dil~fW~a~~~~~~~~l----~~~~Pfk~V~~Hg~v~D~------~G------ 700 (1017)
.| +.--.+|.|+|+|+.| |.+++..++|++...++- .+..||++++++|||+.. .|
T Consensus 511 kN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ 590 (876)
T KOG0435|consen 511 KNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPE 590 (876)
T ss_pred CCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHH
Confidence 33 3335689999999999 678898999988765543 456899999999999841 12
Q ss_pred -------------------------ccccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCC
Q 001757 701 -------------------------RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIP 755 (1017)
Q Consensus 701 -------------------------~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~ 755 (1017)
+|||||++|+|||.++++
T Consensus 591 ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~------------------------------------- 633 (876)
T KOG0435|consen 591 EVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVL------------------------------------- 633 (876)
T ss_pred HhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHH-------------------------------------
Confidence 799999999999999999
Q ss_pred CCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHH
Q 001757 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAIS 835 (1017)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~ 835 (1017)
+||+|++|++++..++..+++||+.+.+.|..+|+.++|+++.-++..-.++-.+......+.....++-+.+..|.+++
T Consensus 634 ~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~ 713 (876)
T KOG0435|consen 634 EYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIK 713 (876)
T ss_pred HhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976665422211111111112335567789999999999
Q ss_pred HHHHhhcc-CCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 001757 836 RTASSLNS-YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELW 914 (1017)
Q Consensus 836 ~v~~a~e~-~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelw 914 (1017)
.|+.+||. +.++.|+..++.|. +.|...+ |..+.. ++ ....+|+.++.||+|++||+|+|+|
T Consensus 714 ~vt~~~e~~~slNtaIS~~m~lt-N~l~~a~----k~~~~h-~~-----------~~~~al~~lv~mlaP~aPh~asE~W 776 (876)
T KOG0435|consen 714 QVTEHYEVLFSLNTAISDMMGLT-NALKKAL----KIVLVH-SP-----------EFERALEALVIMLAPFAPHVASELW 776 (876)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH-HHHHHhh----hhhhhc-Ch-----------HHHHHHHHHHHHHhccCchhHHHHH
Confidence 99999987 77999999999885 5554443 222211 12 1234577889999999999999999
Q ss_pred HhCCCCCCCCCCCCeeecCCCCCCCCC
Q 001757 915 QRLPQPKGCATKESIMLCEYPSAVEGW 941 (1017)
Q Consensus 915 q~L~~~~~~~~~~SI~~~~~P~~~~~~ 941 (1017)
..|.... .-.++ ..||.+++.+
T Consensus 777 s~l~~~~--~~~~~---~~WP~vd~~~ 798 (876)
T KOG0435|consen 777 SALANDL--SWVSD---VKWPEVDPDY 798 (876)
T ss_pred HHHhccc--cchhc---cCCccCChhh
Confidence 9998521 11122 2599887643
No 29
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-88 Score=815.59 Aligned_cols=505 Identities=20% Similarity=0.284 Sum_probs=411.5
Q ss_pred CcEEEECCCCCCCCCCCcchhHHH-HHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHH
Q 001757 175 PSFVIVLPPPNVTGALHIGHALTT-AIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1017)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~-~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1017)
++|+|++|||||||.||||||+++ ++.|+++||+||+|++|+|++|+||||+||+.++++ .|+++
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~-----~g~~~--------- 68 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK-----EGVTP--------- 68 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-----cCCCH---------
Confidence 479999999999999999999997 999999999999999999999999999999998875 36653
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccc
Q 001757 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1017)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~ 333 (1017)
++|++++.+.+.++|++||+++| .+++|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.+|..
T Consensus 69 ---~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g- 142 (556)
T PRK12268 69 ---QELADKYHEEHKEDFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEG- 142 (556)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceec-
Confidence 58899999999999999999776 688999999999999999999999999999999999999999999854420
Q ss_pred cCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccce
Q 001757 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1017)
Q Consensus 334 ~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipI 413 (1017)
.+|.|+
T Consensus 143 ---------------------------------------------------------------------~cp~c~----- 148 (556)
T PRK12268 143 ---------------------------------------------------------------------TCPYCG----- 148 (556)
T ss_pred ---------------------------------------------------------------------cCCCCC-----
Confidence 123221
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccc
Q 001757 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1017)
Q Consensus 414 i~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~ 493 (1017)
. .+.+|..||.||..+
T Consensus 149 -----------------------~----------------~~~~G~~ce~cg~~~------------------------- 164 (556)
T PRK12268 149 -----------------------Y----------------EGARGDQCDNCGALL------------------------- 164 (556)
T ss_pred -----------------------C----------------cccCCchhhhccccC-------------------------
Confidence 1 123788899998321
Q ss_pred ccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHh-hccCccceeecCCCC
Q 001757 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQLWWGH 572 (1017)
Q Consensus 494 ~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRqr~WG~ 572 (1017)
+......|+|+|||++++++.++|||++++++++++++++ +++.++|+..++++.+||+ +++||||||||+||+
T Consensus 165 ~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~-----~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGi 239 (556)
T PRK12268 165 DPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWI-----ESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGI 239 (556)
T ss_pred ChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHH-----hhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCe
Confidence 1123345999999999999999999999999999999998 3688999999999999999 899999999999999
Q ss_pred CcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCcccccccc-CCC---CCh
Q 001757 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLG-WPD---DTD 648 (1017)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg-~p~---~~~ 648 (1017)
||| |.+. +..++|||||+.+.+++.++ |.+ +..
T Consensus 240 piP-~~~~------------------------------------------~~~~iyvW~da~~~y~~~~~~~~~~~g~~~ 276 (556)
T PRK12268 240 PVP-WPGF------------------------------------------EGKVFYVWFDAVIGYISASKEWAERTGDPE 276 (556)
T ss_pred eCC-CCCC------------------------------------------CCcEEEEeehHhhHHHHHHHHHHHhcCCch
Confidence 999 6431 23689999998877776543 222 235
Q ss_pred hhhhhC----CccccceeecccchHHHHHHHHHhhhc--CCCCceEEEEcceeeCCCCccccccCCcccCccccccccch
Q 001757 649 DLKAFY----PTSVLETGHDILFFWVARMVMLGIKLG--GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISL 722 (1017)
Q Consensus 649 d~~~~~----P~dl~~~G~Dil~fW~a~~~~~~~~l~--~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l 722 (1017)
+|..|| |.+++++|+||++||......+-+... ...| +++++||||++ +|+|||||+||||+|.|+|+
T Consensus 277 ~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P-~~v~~~G~v~~-~G~KMSKS~GN~I~p~dli~---- 350 (556)
T PRK12268 277 AWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLP-DEIVSSEYLTL-EGGKFSKSRGWGIWVDDALE---- 350 (556)
T ss_pred HHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCC-CEeeccCCEEE-CCeeeccCCCcccCHHHHHH----
Confidence 687788 778999999999987654333222222 4566 79999999984 89999999999999999999
Q ss_pred hhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH--HHHHHHHHHHHHHHH
Q 001757 723 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFS 800 (1017)
Q Consensus 723 ~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~--~r~f~nkl~N~~rf~ 800 (1017)
+||+|+|||||++.++.++|++|+.+.+.. .+++++++||.+.++
T Consensus 351 ---------------------------------~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~ 397 (556)
T PRK12268 351 ---------------------------------RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRV 397 (556)
T ss_pred ---------------------------------HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHH
Confidence 899999999999988889999999998753 456889999987655
Q ss_pred HhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcch
Q 001757 801 MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAF 880 (1017)
Q Consensus 801 l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~ 880 (1017)
...+...+... .+....+..|+||+++|+.+++.+.++|++|+|+.|++.+++|+ ++||+|++..|||...++..
T Consensus 398 ~~~~~~~~~~~--~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw~~~~~~~- 472 (556)
T PRK12268 398 LSFIEKYFGGI--VPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPWKLAKTDR- 472 (556)
T ss_pred HHHHHHhcCCc--CCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCChhhhcCCH-
Confidence 44332111110 11123567899999999999999999999999999999999996 69999999999985433211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCC
Q 001757 881 ASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSA 937 (1017)
Q Consensus 881 ~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~ 937 (1017)
...+.+..++..+++.+++||+|||||+|||||++|+. +++..+.||..
T Consensus 473 -~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~-------~~~~~~~w~~~ 521 (556)
T PRK12268 473 -ERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-------ENIEKLTWESL 521 (556)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC-------CCCcccchhhh
Confidence 02334444555678889999999999999999999974 24555667653
No 30
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.1e-88 Score=776.84 Aligned_cols=380 Identities=63% Similarity=1.117 Sum_probs=345.6
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHH
Q 001757 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1017)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~ 254 (1017)
|+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++||||||+|||.+||+++.. .+++++++++++|++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~-~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGI-EGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcc-cccchhcCCHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998753 344667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCcccccccccccc
Q 001757 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1017)
Q Consensus 255 ~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~ 334 (1017)
.|++|++++++.++++|++||+++||++++.|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+|||.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~e----- 154 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIE----- 154 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcch-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999721
Q ss_pred CCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceE
Q 001757 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1017)
Q Consensus 335 ~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi 414 (1017)
T Consensus 155 -------------------------------------------------------------------------------- 154 (382)
T cd00817 155 -------------------------------------------------------------------------------- 154 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccc
Q 001757 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1017)
Q Consensus 415 ~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~ 494 (1017)
|
T Consensus 155 -----v-------------------------------------------------------------------------- 155 (382)
T cd00817 155 -----V-------------------------------------------------------------------------- 155 (382)
T ss_pred -----h--------------------------------------------------------------------------
Confidence 1
Q ss_pred cccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCc
Q 001757 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 574 (1017)
Q Consensus 495 ~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pI 574 (1017)
|+|||++++++.++|||++++++++++++.+ +++.++|+|++.++++.+||++++|||||||++||+||
T Consensus 156 --------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~---~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipv 224 (382)
T cd00817 156 --------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAV---KEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRI 224 (382)
T ss_pred --------cccCCCeEEEEecCeeEEehHHHHHHHHHHH---hcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCcc
Confidence 8999999999999999999999999999999 66669999999999999999999999999999999999
Q ss_pred CcceeccCchhhhccCCCCcceEEecCHHHHHHHH--hhhcCCCccccccCCCcEEEEeccCccccccccCCCCChhhhh
Q 001757 575 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVA--NKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKA 652 (1017)
Q Consensus 575 P~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~ 652 (1017)
|+|+|..++ ..+++...++....+ ...++.....+++++||||||||||++|++.++||.++.+|++
T Consensus 225 P~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~ 293 (382)
T cd00817 225 PAWYCKDGG-----------HWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKK 293 (382)
T ss_pred ceEEeCCCC-----------cEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhh
Confidence 999997653 233333333332222 1123333446899999999999999999999999988778999
Q ss_pred hCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcC
Q 001757 653 FYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 732 (1017)
Q Consensus 653 ~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~ 732 (1017)
+||+|++++|+||+|||+.++++++..+.|..||++|++||+|+|.+|+|||||+||+|+|.|+++
T Consensus 294 ~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~-------------- 359 (382)
T cd00817 294 FYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVID-------------- 359 (382)
T ss_pred cCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001757 733 NLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1017)
Q Consensus 733 nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1017)
+||+|++|||+++.++.++|.+|
T Consensus 360 -----------------------~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 360 -----------------------GYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred -----------------------hcCcHHHHHHHHhCCCccCCCCC
Confidence 89999999999999989999876
No 31
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.2e-86 Score=797.45 Aligned_cols=490 Identities=24% Similarity=0.328 Sum_probs=417.5
Q ss_pred EEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHH
Q 001757 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1017)
Q Consensus 177 f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~ 256 (1017)
|+|++|||||||.|||||++++++.|+++||+||+|++|+|++|+|+||+||+..+++ +|+++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~-----~g~~~------------ 63 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-----EGLTP------------ 63 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-----cCCCH------------
Confidence 6899999999999999999999999999999999999999999999999999888865 46553
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCC
Q 001757 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIP 336 (1017)
Q Consensus 257 ~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~ 336 (1017)
+++++.+.+.+++++++||+++| ....|+++.|...++++|.+|+++|+||++.++|+|||.|+|+|+|.+|++
T Consensus 64 ~e~~~~~~~~~~~~l~~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g---- 137 (530)
T TIGR00398 64 KELVDKYHEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEG---- 137 (530)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcC----
Confidence 47889999999999999999988 567899999999999999999999999999999999999999999965531
Q ss_pred CceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceEec
Q 001757 337 KREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICD 416 (1017)
Q Consensus 337 ~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~ 416 (1017)
.+|.|
T Consensus 138 ------------------------------------------------------------------~cp~c--------- 142 (530)
T TIGR00398 138 ------------------------------------------------------------------TCPKC--------- 142 (530)
T ss_pred ------------------------------------------------------------------CCCCC---------
Confidence 12332
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccc
Q 001757 417 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDN 496 (1017)
Q Consensus 417 ~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~ 496 (1017)
+.. |.+|.+|++||. ..++.
T Consensus 143 -------------------~~~----------------~~~g~~ce~cg~-------------------------~~~~~ 162 (530)
T TIGR00398 143 -------------------GSE----------------DARGDHCEVCGR-------------------------HLEPT 162 (530)
T ss_pred -------------------CCc----------------ccccchhhhccc-------------------------cCCHH
Confidence 222 236888999982 23556
Q ss_pred cccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCC-CceEEeccccHHHHHHHHhh-ccCccceeecC-CCCC
Q 001757 497 EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDK-KKLELIPRQYTAEWRRWLEA-IRDWCVSRQLW-WGHQ 573 (1017)
Q Consensus 497 ~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~-~~i~~~P~~~~~~~~~wl~~-l~DWcISRqr~-WG~p 573 (1017)
.+.+|+|+|||+++|++.++|||++++++++++++.+ ++ .+..+.|+..++.+.+||++ ++|||||||++ ||+|
T Consensus 163 ~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGip 239 (530)
T TIGR00398 163 ELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWI---RKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239 (530)
T ss_pred HhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHH---HhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCee
Confidence 6789999999999999999999999999999999998 43 23556788889999999998 99999999999 9999
Q ss_pred cCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCC-Chhhhh
Q 001757 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKA 652 (1017)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~-~~d~~~ 652 (1017)
||.| +.+|+|||||+++.|++.++++.. +.+|+.
T Consensus 240 vP~~---------------------------------------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~ 274 (530)
T TIGR00398 240 VPND---------------------------------------------PNKVVYVWFDALIGYISSLGILSGDTEDWKK 274 (530)
T ss_pred CCCC---------------------------------------------CCcEEEEeecchHHhHhhhccccCChhhHHH
Confidence 9965 126899999999999998888753 467999
Q ss_pred hCCcc-----ccceeecccchHHHH--HHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhH
Q 001757 653 FYPTS-----VLETGHDILFFWVAR--MVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1017)
Q Consensus 653 ~~P~d-----l~~~G~Dil~fW~a~--~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l 725 (1017)
|||.+ ++++|+||++||... .+++++ |..||++|++||||++. |+|||||+||+|+|.|+|+
T Consensus 275 ~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~---~~~~~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~------- 343 (530)
T TIGR00398 275 WWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGL---GLPLPTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLA------- 343 (530)
T ss_pred hCCCCCCceEEEEEecccchhHHHHHHHHHHhC---CCCCCCEEEeeccEEEC-CceecccCCceecHHHHHH-------
Confidence 99999 999999999964332 222332 24578999999999976 9999999999999999999
Q ss_pred HHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHH--HHHHHHHHHHHHHHHhh
Q 001757 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSMSK 803 (1017)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~--r~f~nkl~N~~rf~l~~ 803 (1017)
+||+|++||||++.++.++|++|+.+.+... +++++++||++.++++.
T Consensus 344 ------------------------------~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~ 393 (530)
T TIGR00398 344 ------------------------------RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGF 393 (530)
T ss_pred ------------------------------HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998888889999999998765 57899999999776654
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHH
Q 001757 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASE 883 (1017)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~ 883 (1017)
+.+.+.... .........|+|++++++.+++.+.++|++|+|+.|++.+++|+ +++|.|++.+|||....+.. .
T Consensus 394 ~~~~~~~~~-~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~~~~~~---~ 467 (530)
T TIGR00398 394 IKKYFNGVL-PSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWELFKQSP---R 467 (530)
T ss_pred HHHhcCCcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhhcCChH---H
Confidence 432121100 00112357899999999999999999999999999999999995 79999999999997654332 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCC
Q 001757 884 RSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 884 r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
+++++.+++.+++.+++||+|||||+||+||+.|+.
T Consensus 468 ~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 468 LKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 678899999999999999999999999999999975
No 32
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.4e-83 Score=778.43 Aligned_cols=470 Identities=24% Similarity=0.352 Sum_probs=397.3
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHH
Q 001757 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1017)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1017)
+++|+|++|+|||||.|||||++++++.|+++||+||+|++|+|++|+|+||+||+..+++ .|+++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-----~g~~~--------- 68 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-----AGKTP--------- 68 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH-----cCCCH---------
Confidence 3579999999999999999999999999999999999999999999999999999876643 57665
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccc
Q 001757 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1017)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~ 333 (1017)
.++++++.+.|+++|++||+++| .++.|+|+.|.+.|+++|.+|+++|+||++...++|||.|+++|+|.++.
T Consensus 69 ---~e~~d~~~~~fk~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-- 141 (648)
T PRK12267 69 ---QEYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-- 141 (648)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--
Confidence 37889999999999999999988 78889999999999999999999999999999999999999988873320
Q ss_pred cCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccce
Q 001757 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1017)
Q Consensus 334 ~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipI 413 (1017)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccc
Q 001757 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1017)
Q Consensus 414 i~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~ 493 (1017)
+
T Consensus 142 -------~------------------------------------------------------------------------ 142 (648)
T PRK12267 142 -------D------------------------------------------------------------------------ 142 (648)
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHH-HHHhh-ccCccceeec-CC
Q 001757 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWR-RWLEA-IRDWCVSRQL-WW 570 (1017)
Q Consensus 494 ~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~-~wl~~-l~DWcISRqr-~W 570 (1017)
.|+|+|||.+++++.++|||++++++++++++++ ++....+.|+..++.+. +||++ ++|||||||+ .|
T Consensus 143 ------~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~W 213 (648)
T PRK12267 143 ------GGKCPDCGREVELVKEESYFFRMSKYQDRLLEYY---EENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDW 213 (648)
T ss_pred ------CCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHH---hhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCc
Confidence 1679999999999999999999999999999999 54444567999999999 99987 9999999996 69
Q ss_pred CCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCC-CChh
Q 001757 571 GHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD-DTDD 649 (1017)
Q Consensus 571 G~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~-~~~d 649 (1017)
|+|||.+ +.+|+||||||++.|++.++||. +..+
T Consensus 214 GipvP~~---------------------------------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~ 248 (648)
T PRK12267 214 GIPVPFD---------------------------------------------PKHVVYVWIDALLNYITALGYGSDDDEL 248 (648)
T ss_pred ceECCCC---------------------------------------------CCCEEEEcccchHHHHHHcCCCCCCchH
Confidence 9999941 13799999999999999999986 3457
Q ss_pred hhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHh
Q 001757 650 LKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 729 (1017)
Q Consensus 650 ~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l 729 (1017)
|+.|||+|++++|+||++||.....++-+. .|..||++|++|||+++ +|+|||||+||||+|.++++
T Consensus 249 ~~~~wp~~~~~~GkDii~fH~i~wpa~l~~-~~~~~p~~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~----------- 315 (648)
T PRK12267 249 FKKFWPADVHLVGKDILRFHAIYWPIMLMA-LGLPLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVD----------- 315 (648)
T ss_pred HHhhcccceEEEeeeecchhHHHHHHHHHh-CCCCCCcEEEecceEEE-CCceecccCCcccCHHHHHH-----------
Confidence 999999999999999998644332111111 24568899999999995 69999999999999999998
Q ss_pred hcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH--HHHHHHHHHHHHHHHHhhhCCC
Q 001757 730 EEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFSMSKLGEG 807 (1017)
Q Consensus 730 ~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~--~r~f~nkl~N~~rf~l~~l~~~ 807 (1017)
.||+|+|||||++.++.++|.+|+++.+.. .+.|+|+++|++.+++..+...
T Consensus 316 --------------------------~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~ 369 (648)
T PRK12267 316 --------------------------RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKY 369 (648)
T ss_pred --------------------------HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 899999999999988899999999999854 3468999999987776554322
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHH
Q 001757 808 FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAA 887 (1017)
Q Consensus 808 ~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a 887 (1017)
|..... .....+..|+|++++++.+++.+.++|++|+|++|++.+++|+ .+||+|++..|||....++....+.+.+
T Consensus 370 ~~~~~p-~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~~~~~~~~~~~~ 446 (648)
T PRK12267 370 FDGEIP-APGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAKDEGKKERLATV 446 (648)
T ss_pred cCCcCC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhcCcccHHHHHHH
Confidence 221100 0123467899999999999999999999999999999999995 5899999999999543221101123445
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHhCCC
Q 001757 888 QHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 888 ~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
..+++.++..+++||+|||||+||+||+.|+.
T Consensus 447 l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 447 MYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 66777788888999999999999999999985
No 33
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-82 Score=778.16 Aligned_cols=484 Identities=20% Similarity=0.280 Sum_probs=408.3
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHH
Q 001757 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1017)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~ 254 (1017)
.+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+||+..+++ .|+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-----~g~~p---------- 66 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-----EGITP---------- 66 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH-----cCCCH----------
Confidence 369999999999999999999999999999999999999999999999999999998875 46665
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCcccccccccccc
Q 001757 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1017)
Q Consensus 255 ~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~ 334 (1017)
.+|+++|++.++++|++||+++| .+++|+++.|.+.|+++|.+|+++|+||++..+|+|||.|+++|+|.+|+
T Consensus 67 --~e~~~~~~~~~~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~--- 139 (673)
T PRK00133 67 --EELIARYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK--- 139 (673)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee---
Confidence 37899999999999999999988 67889999999999999999999999999999999999999999996543
Q ss_pred CCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceE
Q 001757 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1017)
Q Consensus 335 ~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi 414 (1017)
| .||.|+.
T Consensus 140 ----------------------------------------------------------------g---~cp~C~~----- 147 (673)
T PRK00133 140 ----------------------------------------------------------------G---TCPKCGA----- 147 (673)
T ss_pred ----------------------------------------------------------------c---ccCCCCC-----
Confidence 1 1343321
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccc
Q 001757 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1017)
Q Consensus 415 ~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~ 494 (1017)
. |.+|..|++||..+.
T Consensus 148 -----------------------~----------------d~~g~~ce~cg~~~~------------------------- 163 (673)
T PRK00133 148 -----------------------E----------------DQYGDNCEVCGATYS------------------------- 163 (673)
T ss_pred -----------------------c----------------ccCCchhhhccccCC-------------------------
Confidence 1 236778889983222
Q ss_pred cccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHh-hccCccceeecCC-CC
Q 001757 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQLWW-GH 572 (1017)
Q Consensus 495 ~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRqr~W-G~ 572 (1017)
+.+...|+|.+||.+++++.++|||++++++++.+++.+ ++ +..| |++.++.+.+||+ +++|||||||++| |+
T Consensus 164 ~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~---~~-~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gi 238 (673)
T PRK00133 164 PTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWI---TR-SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGF 238 (673)
T ss_pred hHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHH---hc-CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccce
Confidence 223345899999999999999999999999999999998 42 3445 8899999999996 5999999999999 99
Q ss_pred CcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccc-cCCCC--Chh
Q 001757 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GWPDD--TDD 649 (1017)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~l-g~p~~--~~d 649 (1017)
|+|. + +..|++||||+.+.|++.+ +|++. .++
T Consensus 239 pvP~------~---------------------------------------~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~ 273 (673)
T PRK00133 239 EIPG------A---------------------------------------PGKVFYVWLDAPIGYISSTKNLCDKRGGLD 273 (673)
T ss_pred ECCC------C---------------------------------------CCeEEEEcccchhhhhHHHhhhcccccchh
Confidence 9992 0 2379999999999999887 68764 457
Q ss_pred hhhhCC-cc----ccceeecccch----HHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCcccccccc
Q 001757 650 LKAFYP-TS----VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI 720 (1017)
Q Consensus 650 ~~~~~P-~d----l~~~G~Dil~f----W~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~ 720 (1017)
|+.||| .+ +++.|+||++| |++++++.++ .++++|++||||++ +|+|||||+||||+|.|+|+
T Consensus 274 ~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~-----~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie-- 345 (673)
T PRK00133 274 WDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY-----RLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLD-- 345 (673)
T ss_pred HHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC-----CCCCEEeeeccEEe-cCCcccccCCcccCHHHHHH--
Confidence 899994 42 89999999995 7887766433 34499999999997 99999999999999999999
Q ss_pred chhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCC-ccccccHHHHHH--HHHHHHHHHHHH
Q 001757 721 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQS-DKINLDIQRVVG--YRQWCNKLWNAV 797 (1017)
Q Consensus 721 ~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~-~Dinf~~~~v~~--~r~f~nkl~N~~ 797 (1017)
+||+|++||||++.++.+ +|++|+++.+.. ..+++|++||.+
T Consensus 346 -----------------------------------~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 346 -----------------------------------HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred -----------------------------------HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988888 999999998743 556899999988
Q ss_pred HHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCC-
Q 001757 798 RFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD- 876 (1017)
Q Consensus 798 rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~- 876 (1017)
.++...+...|.... .....|+|++++++.+++.+.++|++|+|+.|++.+++|+ ++||+|++.+|||....
T Consensus 391 ~R~~~~~~k~~~~~~-----~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kpw~~~~~ 463 (673)
T PRK00133 391 SRTAGFINKRFDGKL-----PDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEPWKLAKQ 463 (673)
T ss_pred HHHHHHHHHhcCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcC
Confidence 877654433232211 1245699999999999999999999999999999999994 79999999999985432
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCC
Q 001757 877 NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 877 ~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
+.+ +...+..+++.+++.+++||+|||||+||+||++|+.
T Consensus 464 ~~~---~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 464 DGE---RLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred CHH---HHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 222 3445566777778899999999999999999999985
No 34
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-82 Score=719.77 Aligned_cols=722 Identities=21% Similarity=0.281 Sum_probs=555.4
Q ss_pred hhHHHHHHHHHHHcCCcccCCC----CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccC
Q 001757 150 SSVEKSWYSWWENSGYFIADNK----SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225 (1017)
Q Consensus 150 ~~vE~~w~~~W~~~~~f~~~~~----~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~G 225 (1017)
.+||+++|++|+.+++|+.+.. +++|+|+.+.|.||+||.||+||+++.+-.|+.+-|+||+|++|||++|++|.|
T Consensus 15 ~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTG 94 (1080)
T KOG0437|consen 15 LEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTG 94 (1080)
T ss_pred HHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCC
Confidence 3799999999999999998763 567899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh---------------------------------cCC----------c------cc--cChH---H
Q 001757 226 IATQVVVEKKLMRER---------------------------------KLT----------R------HD--IGRE---Q 251 (1017)
Q Consensus 226 lpiq~~vEk~l~~~~---------------------------------~~~----------~------~~--~g~e---~ 251 (1017)
+||-+.+.|- .++- |+. . .+ ++++ +
T Consensus 95 MPI~A~AdKL-krEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~ 173 (1080)
T KOG0437|consen 95 MPIKASADKL-KREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKK 173 (1080)
T ss_pred CccHHhHHHH-HHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhc
Confidence 9998876542 2110 110 0 01 1233 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCC--hhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccc
Q 001757 252 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIE 329 (1017)
Q Consensus 252 f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d--~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~E 329 (1017)
|.+ +..|..+|.....+++++||.-+||+|.|.|+| |.|-.+|.|+|.+|.+.|.|..|.|...|||.+++++.|++
T Consensus 174 F~d-~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD 252 (1080)
T KOG0437|consen 174 FAD-PKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD 252 (1080)
T ss_pred ccC-hhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccc
Confidence 433 679999999999999999999999999999987 88999999999999999999999999999999999999998
Q ss_pred cccc---cCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcc-------------
Q 001757 330 VDYV---DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDAR------------- 393 (1017)
Q Consensus 330 Ve~~---~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~r------------- 393 (1017)
.... ..++.|++++...+.... ..-.+.+.+.+++.||.|||||+|.|+++|+|+.+.
T Consensus 253 R~sGEgV~PqeytliKle~le~~p~------~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi 326 (1080)
T KOG0437|consen 253 RASGEGVGPQEYTLIKLEVLEPFPK------ALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFI 326 (1080)
T ss_pred cccCCCCCcceEEEEEEEecccchh------hccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEE
Confidence 8533 334456665533321100 001123445789999999999999999999999531
Q ss_pred ----------c------------------ccccCCeeecCCC-CCccceEecCccccCCCCCCceecCCCCCcchHHHHH
Q 001757 394 ----------Y------------------SHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGK 444 (1017)
Q Consensus 394 ----------y------------------~~L~G~~~~~P~~-~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~ 444 (1017)
| .+++|..+..|+. ...+.+++... |..+.|||+|.++|+.+||||..++
T Consensus 327 ~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlT-i~~~KGTGvVtsVpsdsPDDf~al~ 405 (1080)
T KOG0437|consen 327 ATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLT-ILATKGTGVVTSVPSDSPDDFAALQ 405 (1080)
T ss_pred eehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeecccee-eeccCCceeEEeCCCCCchhhhHHH
Confidence 2 3577888888885 45566666664 8899999999999999999999885
Q ss_pred H-------hCC-------ceeeeeCC---------------------------------------CCccccCCCCCCCCC
Q 001757 445 R-------HNL-------EFINIFTD---------------------------------------DGKINSNGGLEFEGM 471 (1017)
Q Consensus 445 ~-------~~L-------~~i~iid~---------------------------------------~G~~~e~~g~~f~G~ 471 (1017)
. ||| +++.||.- +|.|. .| +|.|.
T Consensus 406 dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~ml--ig-~y~G~ 482 (1080)
T KOG0437|consen 406 DLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTML--IG-KYKGE 482 (1080)
T ss_pred hhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEE--Ee-ccccc
Confidence 4 233 45555542 33332 35 89999
Q ss_pred ChhhHHHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecc--hHHHHHHHhhhccCCCceEEeccccH
Q 001757 472 PRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCN--SMAMEALYAVMDDDKKKLELIPRQYT 549 (1017)
Q Consensus 472 ~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~--~l~~~al~~v~~~~~~~i~~~P~~~~ 549 (1017)
++.++++.|...|.+.|.++... +..-++-+|||+.|+..|++||||++. ++++.+.+++ .+++..-+..|
T Consensus 483 KVe~~K~~i~~~li~~g~a~~y~--EPEkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cL-----e~l~~f~dEtR 555 (1080)
T KOG0437|consen 483 KVEDAKPKIKTDLIETGDALKYN--EPEKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECL-----ENLNTFSDETR 555 (1080)
T ss_pred cHHhhhhHHHHHHHhcccceeec--CcchhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHH-----hhhhccCHHHH
Confidence 99999999999999999877652 233467899999999999999999997 4888898888 57877888899
Q ss_pred HHHHHHHhhccCccceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccC-CCcEE
Q 001757 550 AEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQD-PDVLD 628 (1017)
Q Consensus 550 ~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dVlD 628 (1017)
+.|..-|+|+..|.+||..+.|++||+ --..--+.+.++++|+.+|+++|-...+...... +.-++.-.|- ++|+|
T Consensus 556 ~~fE~tLdWL~~wacsRsyGLGTrlPW-D~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~--~plgi~~~QMtdeVwd 632 (1080)
T KOG0437|consen 556 NGFEDTLDWLGQWACSRSYGLGTRLPW-DEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVE--GPLGIKPDQMTDEVWD 632 (1080)
T ss_pred HHHHHHHHHHHhhhhhccccCCCCCCC-cHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCc--ccCCCChhhcCHHHHH
Confidence 999999999999999999999999995 1110012367789999999998876653221100 0012233333 35777
Q ss_pred EEeccCccccccccCCCC-----ChhhhhhCCccccceeecccchHHHHHHHHHhhhc--CCCCceEEEEcceeeCCCCc
Q 001757 629 TWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLG--GEVPFTKVYLHPMIRDAHGR 701 (1017)
Q Consensus 629 tWFdSgl~p~s~lg~p~~-----~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~--~~~Pfk~V~~Hg~v~D~~G~ 701 (1017)
.-|--+..+- .+..|.+ +.+|++|||.|++++|+|++..+...++....++. .+.| +.|.++|+++ .+++
T Consensus 633 YvF~~~~~~k-~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHLm-LNsE 709 (1080)
T KOG0437|consen 633 YVFLNEPYPK-NTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHLM-LNSE 709 (1080)
T ss_pred HhhccCCCCc-CCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceEE-ecch
Confidence 6665444332 2223332 46899999999999999999888777777777764 4678 9999999999 9999
Q ss_pred cccccCCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHH
Q 001757 702 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 781 (1017)
Q Consensus 702 KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~ 781 (1017)
|||||.||+.+..+.|+ ++|||+.|+.|+..++.-+|.||...
T Consensus 710 KMSKSTGNfmTL~qaie-------------------------------------KFgad~tRlalAdaGD~veDANF~ea 752 (1080)
T KOG0437|consen 710 KMSKSTGNFMTLEQAIE-------------------------------------KFGADGTRLALADAGDGVEDANFVEA 752 (1080)
T ss_pred hhccccCCeeeHHHHHH-------------------------------------HhCccceeeeeecccCCcccchhHHh
Confidence 99999999999999998 99999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCC-CCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHH-HHHHHHh
Q 001757 782 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPH-NLPFSCKWILSVLNKAISRTASSLNSYEFSDAAST-VYSWWQY 859 (1017)
Q Consensus 782 ~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~-~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~-i~~f~~~ 859 (1017)
...+ ++-+|++...++...+... . .+... ...+.||.+.+.+|.++....++|+...|..|++. +|+| .
T Consensus 753 ~AnA---aILRLyt~~ew~eEm~~~~-s---~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~--q 823 (1080)
T KOG0437|consen 753 NANA---AILRLYTYVEWIEEMCENR-S---SLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDL--Q 823 (1080)
T ss_pred cccH---HHHHHHHHHHHHHHHHhhH-H---hhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH--H
Confidence 6543 4556777777765443210 0 01111 23488999999999999999999999999999996 7887 6
Q ss_pred hHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCC
Q 001757 860 QFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 939 (1017)
Q Consensus 860 ~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~ 939 (1017)
...|+|-+.+- +. .....++..+++...||+||+||++|.||+.+... ++++..+||.+++
T Consensus 824 aArD~Yrel~g-----~~--------mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~------~~~v~~~wP~~s~ 884 (1080)
T KOG0437|consen 824 AARDMYRELCG-----EG--------MHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKK------NFSVNVGWPFVSP 884 (1080)
T ss_pred HHHHHHHHHhc-----cc--------ccHHHHHHHHHHHHHHHhccchHHHHHHHHHhccC------CceeecCCCCCCC
Confidence 77788877653 11 12457888899999999999999999999998752 4455569999875
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Q 001757 940 GWTDERAEFEMDLVESTVRCIRSL 963 (1017)
Q Consensus 940 ~~~~~~~e~~~~~v~~i~~~iRsl 963 (1017)
. ++.+-..-.++++.+..+|..
T Consensus 885 ~--~e~~~~~~~yl~~~l~r~~~~ 906 (1080)
T KOG0437|consen 885 P--DEKLGSSALYLKRTLKRLRAE 906 (1080)
T ss_pred H--HHHhhhhHHHHHHHHHHHHHH
Confidence 3 333333333455555555444
No 35
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=2.6e-80 Score=760.83 Aligned_cols=493 Identities=15% Similarity=0.211 Sum_probs=405.5
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHH-HHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChH
Q 001757 172 SSKPSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGRE 250 (1017)
Q Consensus 172 ~~k~~f~i~~pPPy~nG~LHiGHal~-~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e 250 (1017)
.++++|+|++|||||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+..+++ .|+++
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-----~g~~p------ 82 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-----ENCTP------ 82 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-----cCCCH------
Confidence 45668999999999999999999996 6779999999999999999999999999999988864 46664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCcccccccc
Q 001757 251 QFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV 330 (1017)
Q Consensus 251 ~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EV 330 (1017)
++|++++++.++++|++||+++| ++++|+||.|.++|+++|.+|+++|+||++.+.++|||+|+|+|+|..|
T Consensus 83 ------~e~~d~~~~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v 154 (801)
T PLN02610 83 ------KEICDKYHAIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLV 154 (801)
T ss_pred ------HHHHHHHHHHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHh
Confidence 58899999999999999998888 8899999999999999999999999999999999999999999999765
Q ss_pred ccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCC--CC
Q 001757 331 DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPF--NG 408 (1017)
Q Consensus 331 e~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~--~~ 408 (1017)
+. .||. |+
T Consensus 155 ~G----------------------------------------------------------------------~CP~~~C~ 164 (801)
T PLN02610 155 EG----------------------------------------------------------------------TCPTEGCN 164 (801)
T ss_pred cC----------------------------------------------------------------------cCCccccC
Confidence 41 1454 32
Q ss_pred CccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcC
Q 001757 409 RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKG 488 (1017)
Q Consensus 409 ~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~g 488 (1017)
. . +.+|..|++||.
T Consensus 165 ~----------------------------~----------------~a~Gd~Ce~Cg~---------------------- 178 (801)
T PLN02610 165 Y----------------------------D----------------SARGDQCEKCGK---------------------- 178 (801)
T ss_pred c----------------------------c----------------ccccchhhhccc----------------------
Confidence 1 0 136778899982
Q ss_pred CccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHH---HHHHHHh-hccCccc
Q 001757 489 LYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTA---EWRRWLE-AIRDWCV 564 (1017)
Q Consensus 489 l~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~---~~~~wl~-~l~DWcI 564 (1017)
...+..+..|+|++||.+++.+-+.|||++++++++++++.+ +... +.|....+ ...+||+ +++||||
T Consensus 179 ---~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~---~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~I 250 (801)
T PLN02610 179 ---LLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYI---NETS--VAGGWSQNAIQTTNAWLRDGLKPRCI 250 (801)
T ss_pred ---cCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHH---HhCC--CCCCcCHHHHHHHHHHHhCCCCCcce
Confidence 234566778999999999999999999999999999999998 4332 44655444 4458996 5999999
Q ss_pred eeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccc-cC
Q 001757 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GW 643 (1017)
Q Consensus 565 SRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~l-g~ 643 (1017)
||...||+|+|. .+ -+..|++||||+.+.|++.+ +|
T Consensus 251 sR~~~WGipvP~-----~~--------------------------------------~~~~v~YVWfDAl~~Yis~~~~~ 287 (801)
T PLN02610 251 TRDLKWGVPVPL-----EK--------------------------------------YKDKVFYVWFDAPIGYVSITACY 287 (801)
T ss_pred eeecCCcccCCC-----CC--------------------------------------CCCcEEEEehhhHHHHHHHHhhh
Confidence 999999999994 00 02379999999999999987 77
Q ss_pred CCCChhhhhhCCc--c---ccceeecccch----HHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCcc
Q 001757 644 PDDTDDLKAFYPT--S---VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPL 714 (1017)
Q Consensus 644 p~~~~d~~~~~P~--d---l~~~G~Dil~f----W~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~ 714 (1017)
.. +|+.|||. + +++.|+||++| |++.+++.+... .+| ++|++|||+. .+|+|||||+||||+|.
T Consensus 288 ~~---~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~--~~p-~~i~~~g~l~-~eG~KMSKS~GNvV~p~ 360 (801)
T PLN02610 288 TP---EWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW--TMM-KTISVTEYLN-YEGGKFSKSKGVGVFGN 360 (801)
T ss_pred hh---HHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCc--CCC-CEEEeccCEe-cCCceecCcCCcccCHH
Confidence 53 58889976 6 79999999986 666665544211 134 9999999997 89999999999999999
Q ss_pred ccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCCCccccccHHHHHHH-H-HHHH
Q 001757 715 EVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGY-R-QWCN 791 (1017)
Q Consensus 715 dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~-~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~-r-~f~n 791 (1017)
++++ . ||+|++||||++..+.++|.+|+++.+... + .++|
T Consensus 361 ~~i~-------------------------------------~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n 403 (801)
T PLN02610 361 DAKD-------------------------------------TNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLN 403 (801)
T ss_pred HHHh-------------------------------------ccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 9998 5 999999999999999999999999987653 3 3899
Q ss_pred HHHHHHHHHHhhhC----CCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHH
Q 001757 792 KLWNAVRFSMSKLG----EGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFI 866 (1017)
Q Consensus 792 kl~N~~rf~l~~l~----~~~~p~~~-~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yl 866 (1017)
+|+|++.+++..+. +.|..... ........+|+|++++++++++++.++|++|+|+.|++.|++| .++||+||
T Consensus 404 ~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l--~~~~NkYI 481 (801)
T PLN02610 404 NLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSI--SSEGNAYL 481 (801)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHHHHH
Confidence 99998776665443 22322110 0011234679999999999999999999999999999999998 79999999
Q ss_pred Hhhccccc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCC
Q 001757 867 EAIKPYFA-GDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 867 e~~K~~l~-~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
+..+||-. .++.. +...+..++..+++.+++||+||||++||+||++|+.
T Consensus 482 e~~kPW~L~k~d~~---~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 482 QESQFWKLYKEDKP---SCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HhcCchhhhCCCHH---HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 99999943 33221 2334555566688889999999999999999999984
No 36
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-80 Score=741.83 Aligned_cols=464 Identities=24% Similarity=0.371 Sum_probs=401.1
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHH
Q 001757 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1017)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~ 254 (1017)
++|+|++|||||||.|||||++++++.|+++||+||+|++|.+++|+|+||.||+..++ +.|+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~-----~~g~~~---------- 65 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE-----EAGISP---------- 65 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHH-----HcCCCH----------
Confidence 36999999999999999999999999999999999999999999999999999876654 346664
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCcccccccccccc
Q 001757 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1017)
Q Consensus 255 ~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~ 334 (1017)
.++++.+...|+++|++||+.+| ..+.|+++.|...|+++|.+|+++|+||++.+.|+||+.|+|+|++.|+.
T Consensus 66 --~~~~~~~~~~~~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~--- 138 (511)
T PRK11893 66 --QELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI--- 138 (511)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc---
Confidence 37889999999999999999877 66789999999999999999999999999999999999999999874421
Q ss_pred CCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceE
Q 001757 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1017)
Q Consensus 335 ~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi 414 (1017)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccc
Q 001757 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1017)
Q Consensus 415 ~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~ 494 (1017)
+ +
T Consensus 139 ------------------------------------------------~-~----------------------------- 140 (511)
T PRK11893 139 ------------------------------------------------E-D----------------------------- 140 (511)
T ss_pred ------------------------------------------------C-C-----------------------------
Confidence 0 0
Q ss_pred cccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhh-ccCcccee-ecCCCC
Q 001757 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSR-QLWWGH 572 (1017)
Q Consensus 495 ~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISR-qr~WG~ 572 (1017)
.|+|||||++++++.++|||++++.+++++.+.+ +++...+.|+..++.+.+||++ ++|||||| |++||+
T Consensus 141 -----~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGi 212 (511)
T PRK11893 141 -----GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELY---EANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGI 212 (511)
T ss_pred -----CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCc
Confidence 1799999999999999999999999999999988 4322335799999999999984 99999999 999999
Q ss_pred CcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCC----h
Q 001757 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT----D 648 (1017)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~----~ 648 (1017)
|||.+ +.+|+||||||++.|++.++||.+. +
T Consensus 213 piP~~---------------------------------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~ 247 (511)
T PRK11893 213 PVPGD---------------------------------------------PKHVIYVWFDALTNYLTALGYPDDEELLAE 247 (511)
T ss_pred cCCCC---------------------------------------------CCceEEEEecCcHHHHhHhccccccccchh
Confidence 99941 2379999999999999999998753 3
Q ss_pred hhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHH
Q 001757 649 DLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKR 728 (1017)
Q Consensus 649 d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~ 728 (1017)
+|.+|||.|++++|+||++||....+++..++.+..| +.+++||||++ +|+|||||+||+|+|.|+++
T Consensus 248 ~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~---------- 315 (511)
T PRK11893 248 LFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVD---------- 315 (511)
T ss_pred HHHhcCCCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEE-CCeeecccCCcEEcHHHHHH----------
Confidence 6889999999999999999988888777777666778 99999999995 89999999999999999999
Q ss_pred hhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHH--HHHHHHHHHHHHHHHhhhC-
Q 001757 729 LEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSMSKLG- 805 (1017)
Q Consensus 729 l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~--r~f~nkl~N~~rf~l~~l~- 805 (1017)
+||+|++||||++.++.++|++|+.+.+... ..++++++|++..+...+.
T Consensus 316 ---------------------------~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~ 368 (511)
T PRK11893 316 ---------------------------EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAK 368 (511)
T ss_pred ---------------------------HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888889999999998553 3488999998764433322
Q ss_pred --CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCC-CcchHH
Q 001757 806 --EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD-NPAFAS 882 (1017)
Q Consensus 806 --~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~-~~~~~~ 882 (1017)
+++.|.. ..+...|+|++++++.+++.+.++|++|+|+.|++.+++|+ ..+|.|++..+||.... +..
T Consensus 369 ~~~~~~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~~~~~~~~--- 439 (511)
T PRK11893 369 NFDGKVPEP----GALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWSLAKTDPE--- 439 (511)
T ss_pred hcCCCCCCC----cccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChhhhcCCHH---
Confidence 2223321 13467899999999999999999999999999999999996 67899999999985433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCC
Q 001757 883 ERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 883 ~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
..+.+..+++.++..+++||+|||||+||+||+.|+.
T Consensus 440 ~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 440 RLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 4566778888899999999999999999999999974
No 37
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=4e-78 Score=722.46 Aligned_cols=478 Identities=20% Similarity=0.314 Sum_probs=392.6
Q ss_pred HcCCcccCCC-----CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHH
Q 001757 162 NSGYFIADNK-----SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 236 (1017)
Q Consensus 162 ~~~~f~~~~~-----~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l 236 (1017)
+..+|.++.+ ..+++|+|++|||||||.||||||++++++|+++||+||+|++|+|++|||+||+||+..+++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~-- 128 (616)
T PLN02224 51 KRALYCTSSSQESTVDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA-- 128 (616)
T ss_pred cceeeccCCCcccCCCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH--
Confidence 4456666543 235689999999999999999999999999999999999999999999999999998876643
Q ss_pred HHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeee
Q 001757 237 MRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVN 316 (1017)
Q Consensus 237 ~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~ 316 (1017)
.|+++ .++++++...+++++++||+++| ++++|++|.|.+.|+++|.+|+++|+||++.++++
T Consensus 129 ---~g~~p------------~e~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~ 191 (616)
T PLN02224 129 ---NGRNP------------PEHCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGL 191 (616)
T ss_pred ---cCCCh------------HHHHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeee
Confidence 46654 36778888899999999998666 99999999999999999999999999999999999
Q ss_pred ecCCCCccccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCccccc
Q 001757 317 WDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSH 396 (1017)
Q Consensus 317 wcp~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~ 396 (1017)
|||+|++.+.+.|+.
T Consensus 192 yc~~ce~f~~~~~l~----------------------------------------------------------------- 206 (616)
T PLN02224 192 YCVNCEEYKDEKELL----------------------------------------------------------------- 206 (616)
T ss_pred ecCCCCCCCCHHHHc-----------------------------------------------------------------
Confidence 999998765542220
Q ss_pred ccCCeeecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhH
Q 001757 397 LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKA 476 (1017)
Q Consensus 397 L~G~~~~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~a 476 (1017)
+
T Consensus 207 ------------------------------------------------------------~------------------- 207 (616)
T PLN02224 207 ------------------------------------------------------------E------------------- 207 (616)
T ss_pred ------------------------------------------------------------C-------------------
Confidence 0
Q ss_pred HHHHHHHHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHH
Q 001757 477 REAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL 556 (1017)
Q Consensus 477 r~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl 556 (1017)
-+.|..||.+++.+-+++||++++++++.+.+.+ ++..-.+.|+..++...+||
T Consensus 208 -----------------------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~---~~~~~~~~p~~~~~~~~~~l 261 (616)
T PLN02224 208 -----------------------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDIL---AQNPRFVQPSYRLNEVQSWI 261 (616)
T ss_pred -----------------------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHH
Confidence 0236667899999999999999999999999998 43332467999999999999
Q ss_pred hh-ccCccceeec-CCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccC
Q 001757 557 EA-IRDWCVSRQL-WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSG 634 (1017)
Q Consensus 557 ~~-l~DWcISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSg 634 (1017)
++ ++||||||.+ .||+|+|.. +..|++||||+.
T Consensus 262 ~~gL~d~~ISR~~~~WGIpvP~~---------------------------------------------~~~viYVWfDAl 296 (616)
T PLN02224 262 KSGLRDFSISRALVDWGIPVPDD---------------------------------------------DKQTIYVWFDAL 296 (616)
T ss_pred hcCCCCccccCCCCCCceECCCC---------------------------------------------CCcEEEEehhhH
Confidence 85 9999999986 799999931 237999999999
Q ss_pred ccccccccCCCCCh----hhhhhCCccccceeecccch----HHHHHHHHHhhhcCCCCceEEEEcceeeCCCCcccccc
Q 001757 635 LFPLSVLGWPDDTD----DLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 706 (1017)
Q Consensus 635 l~p~s~lg~p~~~~----d~~~~~P~dl~~~G~Dil~f----W~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKS 706 (1017)
+.|++.++++.+.. .+..|||.++++.|+||++| |++.+++.++ ..| ++|++||++ +.+|+|||||
T Consensus 297 ~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~----~~P-~~i~~~g~l-~~eG~KMSKS 370 (616)
T PLN02224 297 LGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGL----ELP-KMVFGHGFL-TKDGMKMGKS 370 (616)
T ss_pred HHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCC----CCC-cEEEecccE-ecCCcccccc
Confidence 99999998765321 24568999999999999996 8876554332 345 999999997 5999999999
Q ss_pred CCcccCccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH-
Q 001757 707 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG- 785 (1017)
Q Consensus 707 lGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~- 785 (1017)
+||+|+|.++++ +||+|++||||++.++.++|.+|+.+.+..
T Consensus 371 ~GN~i~p~e~l~-------------------------------------~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~ 413 (616)
T PLN02224 371 LGNTLEPFELVQ-------------------------------------KFGPDAVRYFFLREVEFGNDGDYSEDRFIKI 413 (616)
T ss_pred CCccCCHHHHHH-------------------------------------HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHH
Confidence 999999999998 899999999999999999999999998643
Q ss_pred -HHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHH
Q 001757 786 -YRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 864 (1017)
Q Consensus 786 -~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~ 864 (1017)
...++|.++|++.+++......+.... .........|+|++++++.+++.+.++|++|+|++|++.+++| ...+|+
T Consensus 414 ~NseLan~lgNll~R~l~~~~k~~~~~~-~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el--~~~~N~ 490 (616)
T PLN02224 414 VNAHLANTIGNLLNRTLGLLKKNCESTL-VEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEI--GNAGNT 490 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcC-CCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHH
Confidence 345999999998776654432221110 0011224568999999999999999999999999999999999 589999
Q ss_pred HHHhhccccc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCC
Q 001757 865 FIEAIKPYFA-GDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 865 Yle~~K~~l~-~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
|++..+||.. .++.........+..+++.+++.+++||+|||||+||+||++|+.
T Consensus 491 Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 491 YMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred HHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 9999999942 221110002345566888999999999999999999999999985
No 38
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.8e-78 Score=682.77 Aligned_cols=338 Identities=34% Similarity=0.640 Sum_probs=311.4
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHH
Q 001757 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1017)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~ 254 (1017)
++|+|++|||||||.||||||++++++|+++||+||+|++|++++||||||+|||.+++++++......+.++++++|.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999876433334557899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCcccccccccccc
Q 001757 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1017)
Q Consensus 255 ~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~ 334 (1017)
.|++|++++.+.+.++|++||++.||+++++|++++|.+.|+++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999977766
Q ss_pred CCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceE
Q 001757 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1017)
Q Consensus 335 ~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi 414 (1017)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccc
Q 001757 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1017)
Q Consensus 415 ~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~ 494 (1017)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCc
Q 001757 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 574 (1017)
Q Consensus 495 ~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pI 574 (1017)
+++++.++|||++++++++++++.+ ++++|+|+..++++.+||++++|||||||++||+||
T Consensus 144 --------------~v~~~~~~qwf~~l~~~~~~l~~~~-----~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~ 204 (338)
T cd00818 144 --------------PLIYRATPQWFIRVTKIKDRLLEAN-----DKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPI 204 (338)
T ss_pred --------------EEEEEecCeEEEEcHHHHHHHHHHH-----hcCcEECHHHHHHHHHHHhcchhcceeeecccCcee
Confidence 2345567899999999999999999 458899999999999999999999999999999999
Q ss_pred CcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCChhhhhhC
Q 001757 575 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 654 (1017)
Q Consensus 575 P~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~ 654 (1017)
|+|+|..++. .. +.++++|+|||||||++|++.++||.++.+|++||
T Consensus 205 P~~~~~~~~~-----------~~----------------------~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~ 251 (338)
T cd00818 205 PVWYCEDCGE-----------VL----------------------VRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELF 251 (338)
T ss_pred eEEEecCCCe-----------EE----------------------EecCCceEEEEEeCCCCHHHHcCCCCcchhhhccC
Confidence 9998864421 11 14678999999999999999999998777899999
Q ss_pred CccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCC
Q 001757 655 PTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL 734 (1017)
Q Consensus 655 P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl 734 (1017)
|+|++++|+||+++|+.++++.++.+.+..||++|++||++++.+|+|||||+||+|+|.|+++
T Consensus 252 p~d~~~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~---------------- 315 (338)
T cd00818 252 PADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD---------------- 315 (338)
T ss_pred CCeEEeecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001757 735 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1017)
Q Consensus 735 ~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1017)
+||+|++||||++.++.++|++|
T Consensus 316 ---------------------~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 316 ---------------------KYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred ---------------------HcCcHHHHHHHHhCCCccCCCCC
Confidence 89999999999999988999876
No 39
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-76 Score=687.61 Aligned_cols=488 Identities=25% Similarity=0.391 Sum_probs=418.7
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHH
Q 001757 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1017)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1017)
.++|+|++|+|||||.|||||+++++.+||++||+||+|++|+|++|+|+||+||+..+++ +|++++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~-----~g~tP~-------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-----EGITPQ-------- 70 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-----cCCCHH--------
Confidence 4689999999999999999999999999999999999999999999999999999998875 588875
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccc
Q 001757 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1017)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~ 333 (1017)
+++++++..+++.++.|+|++| ++.+|.++.|.+.|+++|.+|+++|+||.+...+.||++|++.|.|.+|+.
T Consensus 71 ----el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g- 143 (558)
T COG0143 71 ----ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG- 143 (558)
T ss_pred ----HHHHHHHHHHHHHHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheec-
Confidence 7789999999999999999999 888999999999999999999999999999999999999999999988763
Q ss_pred cCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccce
Q 001757 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1017)
Q Consensus 334 ~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipI 413 (1017)
.||.|+..
T Consensus 144 ---------------------------------------------------------------------~cp~cg~~--- 151 (558)
T COG0143 144 ---------------------------------------------------------------------TCPKCGGE--- 151 (558)
T ss_pred ---------------------------------------------------------------------cCCCcCcc---
Confidence 14444311
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccc
Q 001757 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1017)
Q Consensus 414 i~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~ 493 (1017)
+..|.-|++||. ..
T Consensus 152 -----------------------------------------~arGD~Ce~Cg~-------------------------~~ 165 (558)
T COG0143 152 -----------------------------------------DARGDQCENCGR-------------------------TL 165 (558)
T ss_pred -----------------------------------------ccCcchhhhccC-------------------------cC
Confidence 014566888982 22
Q ss_pred ccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhh-ccCcccee-ecCCC
Q 001757 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSR-QLWWG 571 (1017)
Q Consensus 494 ~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISR-qr~WG 571 (1017)
.+....-|+|+.||...+.+.+++||++++++.+.+++.+ +++.-.+.|.+.++.+.+||++ ++|||||| ...||
T Consensus 166 ~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~---~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 166 DPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWY---ESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred CchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHH---HhCccccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 3444567999999999999999999999999999999999 6555678999999999999975 99999999 89999
Q ss_pred CCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCC---CCh
Q 001757 572 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD---DTD 648 (1017)
Q Consensus 572 ~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~---~~~ 648 (1017)
+|+|- + ...|++||||+.+.|++.++... +..
T Consensus 243 ipvP~------~---------------------------------------p~kv~YVWfDAligYisa~~~~~~~~~~~ 277 (558)
T COG0143 243 IPVPG------D---------------------------------------PGKVIYVWFDALIGYISALGELAEIGDDE 277 (558)
T ss_pred ccCCC------C---------------------------------------CCCEEEEeeccHHHHHHHhcchhccCChH
Confidence 99992 0 23799999999999999998764 557
Q ss_pred hhhhhCCcc----ccceeecccch----HHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCcccccccc
Q 001757 649 DLKAFYPTS----VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI 720 (1017)
Q Consensus 649 d~~~~~P~d----l~~~G~Dil~f----W~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~ 720 (1017)
+|+.|||.+ +++.|+||++| |+++++..+.. .| +.|++||++. .+|+|||||+||||+|.++++
T Consensus 278 ~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~----lP-~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~-- 349 (558)
T COG0143 278 DFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP----LP-TRIFAHGFLT-LEGQKMSKSRGNVVDPDELLE-- 349 (558)
T ss_pred HHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCC----CC-CEEEeeeeEE-ECCccccccCCcEEeHHHHHH--
Confidence 899999998 99999999985 88887766654 46 9999999998 899999999999999999998
Q ss_pred chhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHH--HHHHHHHHHHHH
Q 001757 721 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVR 798 (1017)
Q Consensus 721 ~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~--r~f~nkl~N~~r 798 (1017)
+||+|+|||||+...+.++|.+|+++.+..- ..+.|++.|.+.
T Consensus 350 -----------------------------------~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~ 394 (558)
T COG0143 350 -----------------------------------QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLAN 394 (558)
T ss_pred -----------------------------------HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998754 348999999998
Q ss_pred HHHhhhCCCCC---CCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccC
Q 001757 799 FSMSKLGEGFV---PPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 875 (1017)
Q Consensus 799 f~l~~l~~~~~---p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~ 875 (1017)
.+++.....|. |... . ... ..|+.++.+...+...+.++|++++|++|+..++++ ...+|.||+..+||...
T Consensus 395 R~~~fi~k~~~g~vp~~~-~-~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l--~~~~N~Yi~~~~PW~l~ 469 (558)
T COG0143 395 RTLGFINKYFDGVVPAAG-A-PDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMAL--ASRANKYIDEQAPWKLA 469 (558)
T ss_pred HHHHHHHhccCCcCCccc-c-ccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHhhcCCCchhh
Confidence 88775544333 2221 1 123 688999999999999999999999999999999998 58999999999999433
Q ss_pred CCcchHHHHHHHHHHH---HHHHHHHHHHhhchhhHHHHHHHHhCCC
Q 001757 876 DNPAFASERSAAQHVL---WVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 876 ~~~~~~~~r~~a~~~L---~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
.+. .+..+.++| ..++..+..||+||||.++++||+.|+.
T Consensus 470 k~~----~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~ 512 (558)
T COG0143 470 KED----KRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGL 512 (558)
T ss_pred ccC----cHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCC
Confidence 321 233444444 4455667889999999999999999985
No 40
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.3e-67 Score=593.01 Aligned_cols=312 Identities=39% Similarity=0.704 Sum_probs=289.0
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHH
Q 001757 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1017)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~ 255 (1017)
+|+|++|||||||.||||||++++++|+++||+||+|++|+|++||||||+||+.++++++ +.......+++|.+.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~----~~~~~~~~~~~~~~~ 76 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG----GRKKKTIWIEEFRED 76 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc----CcccccccHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999998764 333344558999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccC
Q 001757 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1017)
Q Consensus 256 ~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~ 335 (1017)
|++|++++.+.|+++|++||+++||++.|.|+++.|.+.|+++|.+|+++|+||++.++|
T Consensus 77 ~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v-------------------- 136 (312)
T cd00668 77 PKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV-------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee--------------------
Confidence 999999999999999999999999999999999999999999999999999999987332
Q ss_pred CCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceEe
Q 001757 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1017)
Q Consensus 336 ~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~ 415 (1017)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccccc
Q 001757 416 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495 (1017)
Q Consensus 416 ~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~ 495 (1017)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcC
Q 001757 496 NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIP 575 (1017)
Q Consensus 496 ~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP 575 (1017)
+..+|||++++++++++++.+ + ++++.|+..++++.+||++..|||||||++||+|+|
T Consensus 137 -----------------~~~~~~f~~~~~l~~~~~~~~---~--~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P 194 (312)
T cd00668 137 -----------------RITEQWFFDMPKFKEKLLKAL---R--RGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP 194 (312)
T ss_pred -----------------EeeeeEEEEcHHHHHHHHHHH---h--cCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC
Confidence 224689999999999999998 4 445899999999999999988999999999999999
Q ss_pred cceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCChhhhhhCC
Q 001757 576 AWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYP 655 (1017)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P 655 (1017)
- +|+||||||+++|+++++|+.++.+|+++||
T Consensus 195 ~------------------------------------------------~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
T cd00668 195 E------------------------------------------------DVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP 226 (312)
T ss_pred c------------------------------------------------ccccchhhccHHHHHHcCCCccchhhhhcCC
Confidence 1 6899999999999999999987778999999
Q ss_pred ccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCC
Q 001757 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 735 (1017)
Q Consensus 656 ~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~ 735 (1017)
.|++++|+||+++|+..+++++.++.+..||+++++||+|++.+|+|||||+||+|+|.|+++
T Consensus 227 ~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~----------------- 289 (312)
T cd00668 227 ADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE----------------- 289 (312)
T ss_pred ceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHH-----------------
Confidence 999999999999999999999999988888999999999998888999999999999999998
Q ss_pred hHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001757 736 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1017)
Q Consensus 736 ~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1017)
+||+|++||||++..+.++|++|
T Consensus 290 --------------------~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 290 --------------------KYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred --------------------HcCcHHHHHHHHhcCCccCCCCC
Confidence 89999999999999888899876
No 41
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-62 Score=534.15 Aligned_cols=471 Identities=23% Similarity=0.338 Sum_probs=388.7
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHH
Q 001757 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1017)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1017)
.+.|++++|.-|||..+||||+++.++.|+|+||+|++|..|.|..|+|+||+.||.+++. .|.++.
T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat-----nG~~P~-------- 104 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT-----NGRNPP-------- 104 (578)
T ss_pred CceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh-----cCCChH--------
Confidence 3589999999999999999999999999999999999999999999999999999998864 566654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccc
Q 001757 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1017)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~ 333 (1017)
+.++...+.+.+.++..|+.++ ++.+|+||.|++.|++++.++.++|+||++.+...||.+|+|.+.+.+|...
T Consensus 105 ----e~cDr~s~~f~qL~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~ 178 (578)
T KOG0436|consen 105 ----ELCDRISQSFRQLWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN 178 (578)
T ss_pred ----HHHhhhhHHHHHHHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC
Confidence 5567777888889999999998 9999999999999999999999999999999999999999999988776421
Q ss_pred cCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccce
Q 001757 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1017)
Q Consensus 334 ~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipI 413 (1017)
. -+.
T Consensus 179 p-----------------------------------------------------------------------~~~----- 182 (578)
T KOG0436|consen 179 P-----------------------------------------------------------------------CPP----- 182 (578)
T ss_pred C-----------------------------------------------------------------------CCC-----
Confidence 0 000
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccc
Q 001757 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1017)
Q Consensus 414 i~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~ 493 (1017)
...|.|+
T Consensus 183 ---gk~vsmE---------------------------------------------------------------------- 189 (578)
T KOG0436|consen 183 ---GKVVSME---------------------------------------------------------------------- 189 (578)
T ss_pred ---Cceeeec----------------------------------------------------------------------
Confidence 0013332
Q ss_pred ccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHh-hccCcccee--e-cC
Q 001757 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR--Q-LW 569 (1017)
Q Consensus 494 ~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR--q-r~ 569 (1017)
||.+|...-...+|++++.+.+.+.+.+ +.+---+.|+...+....||+ +++|..||| + +.
T Consensus 190 ------------sg~~vv~~kE~NY~FrLSkfqk~l~d~l---rkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~ 254 (578)
T KOG0436|consen 190 ------------SGNPVVWRKEDNYFFRLSKFQKPLEDHL---RKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLD 254 (578)
T ss_pred ------------cCCceeEecccceeeeHHhhhhHHHHHH---hcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcc
Confidence 4566667777899999999999999998 544555788888999999996 599999999 4 79
Q ss_pred CCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCC---
Q 001757 570 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD--- 646 (1017)
Q Consensus 570 WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~--- 646 (1017)
||+|+|. .+.++++||||+.+.|++++|+|.+
T Consensus 255 WGIPvP~---------------------------------------------ddsQtIYVWfDAL~nYiSvig~~~~~~N 289 (578)
T KOG0436|consen 255 WGIPVPG---------------------------------------------DDSQTIYVWFDALLNYISVIGYPNKQQN 289 (578)
T ss_pred cCCCCCC---------------------------------------------CCcceEEEeHHHHhhHHHhhcCCchhcc
Confidence 9999992 1357999999999999999999963
Q ss_pred -ChhhhhhCCccccceeecccch----HHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccc
Q 001757 647 -TDDLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGIS 721 (1017)
Q Consensus 647 -~~d~~~~~P~dl~~~G~Dil~f----W~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~ 721 (1017)
...+..+||++++++|+||++| |++.+|..|+.+ | +.|++||++. .+|.|||||+||||||.++++
T Consensus 290 ~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlpl----P-~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~--- 360 (578)
T KOG0436|consen 290 LKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPL----P-KMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQ--- 360 (578)
T ss_pred ccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCC----c-cEEEEeeeee-ecceecchhhccccCHHHHHH---
Confidence 3457789999999999999986 999988887753 5 9999999998 999999999999999999998
Q ss_pred hhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHH--HHHHHHHHHHHH
Q 001757 722 LEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRF 799 (1017)
Q Consensus 722 l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r--~f~nkl~N~~rf 799 (1017)
+||+|++||||+..+..+.|-+|+++.+...+ .+.++|.|++..
T Consensus 361 ----------------------------------kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnR 406 (578)
T KOG0436|consen 361 ----------------------------------KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNR 406 (578)
T ss_pred ----------------------------------HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987654 588999999988
Q ss_pred HHhhhCCCCCCCC-----CCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhccccc
Q 001757 800 SMSKLGEGFVPPL-----KLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFA 874 (1017)
Q Consensus 800 ~l~~l~~~~~p~~-----~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~ 874 (1017)
++++- +++.. ..+.......+.-+.+.++.+.+.+.+.|+++.+..|++++.+. ..-.|-|++..+||..
T Consensus 407 c~gkk---ln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si--~n~~ntlvq~~aPWkl 481 (578)
T KOG0436|consen 407 CLGKK---LNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSI--GNAGNTLVQQRAPWKL 481 (578)
T ss_pred Hhhcc---cChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHH--HHhhhhhhhhcCCcee
Confidence 77631 11111 00000112233447889999999999999999999999999887 4668999999999954
Q ss_pred CC-CcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCC
Q 001757 875 GD-NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1017)
Q Consensus 875 ~~-~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~ 920 (1017)
.. .+.....-.....++.+||+++..||+|+||.++.+++.+|+-.
T Consensus 482 ~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 482 FKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 33 22211122223345667788889999999999999999999864
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=2.1e-61 Score=555.10 Aligned_cols=375 Identities=26% Similarity=0.432 Sum_probs=297.1
Q ss_pred EEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHH
Q 001757 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1017)
Q Consensus 177 f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~ 256 (1017)
|+|++|+|||||.|||||+.+++.+|+++||+||+|++|+++.|+|+||++|+.++++ .|+++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~-----~g~~p------------ 63 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK-----QGIDP------------ 63 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-----TTS-H------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-----cCCCH------------
Confidence 7999999999999999999999999999999999999999999999999999988875 46665
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccCC
Q 001757 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIP 336 (1017)
Q Consensus 257 ~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~~ 336 (1017)
.++++++++.+++.|++|||++| ++..|.|+.|.++|+++|.+|+++|+||++...++||+.|++.|+|.+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g---- 137 (391)
T PF09334_consen 64 EEFCDKYSAKFKELLEALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEG---- 137 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETC----
T ss_pred HHHHHHHHHHHHHHHHHcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeec----
Confidence 47899999999999999999999 788899999999999999999999999999999999999999999988752
Q ss_pred CceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceEec
Q 001757 337 KREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICD 416 (1017)
Q Consensus 337 ~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~ 416 (1017)
.+|.|+..
T Consensus 138 ------------------------------------------------------------------~CP~C~~~------ 145 (391)
T PF09334_consen 138 ------------------------------------------------------------------TCPYCGSD------ 145 (391)
T ss_dssp ------------------------------------------------------------------EETTT--S------
T ss_pred ------------------------------------------------------------------cccCcCcc------
Confidence 24554310
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccc
Q 001757 417 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDN 496 (1017)
Q Consensus 417 ~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~ 496 (1017)
...|..|++||. ..++.
T Consensus 146 --------------------------------------~a~g~~Ce~cG~-------------------------~~~~~ 162 (391)
T PF09334_consen 146 --------------------------------------KARGDQCENCGR-------------------------PLEPE 162 (391)
T ss_dssp --------------------------------------SCTTTEETTTSS-------------------------BEECC
T ss_pred --------------------------------------ccCCCcccCCCC-------------------------Ccccc
Confidence 025677888882 23445
Q ss_pred cccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhh-ccCccceeecCCCCCcC
Q 001757 497 EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQLWWGHQIP 575 (1017)
Q Consensus 497 ~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRqr~WG~pIP 575 (1017)
+..-|+|..||.+++.+..+|||++++++++.+.+.+ +.+..+ .|+..++...+||++ ++||||||...||+|+|
T Consensus 163 ~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l--~~~~~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP 238 (391)
T PF09334_consen 163 ELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWL--ESNPDF--PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP 238 (391)
T ss_dssp CSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHH--HHSTTS--SHHHHHHHHHHHHHT----EE-ECTTSSSEEET
T ss_pred cccCCccccccccCccccceEEEEehHHhHHHHHHHH--hcCCCC--CChhHHHHHHHHhhcccCceeeecCCCCcceee
Confidence 6678999999999999999999999999999999988 122223 677778888899976 99999999999999999
Q ss_pred cceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCC----CChhhh
Q 001757 576 AWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD----DTDDLK 651 (1017)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~----~~~d~~ 651 (1017)
. + +..|++||||+.+.|++.++++. +..+++
T Consensus 239 ~------~---------------------------------------~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~ 273 (391)
T PF09334_consen 239 G------D---------------------------------------PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFK 273 (391)
T ss_dssp T------E---------------------------------------EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHH
T ss_pred c------c---------------------------------------CCceEEEcchHHHHHHHHhccccccccccchhh
Confidence 2 1 23799999999999999998875 446788
Q ss_pred hhCC-----ccccceeecccch----HHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccch
Q 001757 652 AFYP-----TSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISL 722 (1017)
Q Consensus 652 ~~~P-----~dl~~~G~Dil~f----W~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l 722 (1017)
.+|+ ..+++.|+||++| |++.+++.++ .+| +.+++|||++ .+|+|||||+||+|+|.++++
T Consensus 274 ~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~----~lP-~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~---- 343 (391)
T PF09334_consen 274 KWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGL----PLP-RRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLE---- 343 (391)
T ss_dssp HHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB--------SEEEEE--EE-ETTCCEETTTTESSBHHHHHH----
T ss_pred hhccccCCceEEEEEccchhHHHHHHhHHHHhcccC----CCC-CEEEeeeeEE-ECCeeccccCCcccCHHHHHH----
Confidence 8882 2389999999987 5655544222 345 9999999998 899999999999999999999
Q ss_pred hhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH-HH-HHHHHHHHHHHHH
Q 001757 723 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG-YR-QWCNKLWNAVRFS 800 (1017)
Q Consensus 723 ~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~-~r-~f~nkl~N~~rf~ 800 (1017)
+||+|++||||++.++.++|.+|+.+.+.. ++ .+.|++.|++.++
T Consensus 344 ---------------------------------~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 344 ---------------------------------EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp ---------------------------------HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred ---------------------------------hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 899999999999999999999999998765 33 3777888887665
Q ss_pred H
Q 001757 801 M 801 (1017)
Q Consensus 801 l 801 (1017)
+
T Consensus 391 ~ 391 (391)
T PF09334_consen 391 L 391 (391)
T ss_dssp H
T ss_pred C
Confidence 3
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.5e-59 Score=528.85 Aligned_cols=309 Identities=26% Similarity=0.412 Sum_probs=272.6
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHH
Q 001757 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1017)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~ 255 (1017)
+|+|++|||||||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..+++ .|+++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~-----~g~~~----------- 64 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-----EGVTP----------- 64 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH-----cCCCH-----------
Confidence 58999999999999999999999999999999999999999999999999999888864 46654
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccC
Q 001757 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1017)
Q Consensus 256 ~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~ 335 (1017)
.++++.+.+.|++++++||+++| ..++|+++.|...|+++|.+|+++|+||++...++|||.|+++|+
T Consensus 65 -~e~~~~~~~~~~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------- 132 (319)
T cd00814 65 -QELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------- 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------
Confidence 47789999999999999999877 678899999999999999999999999999999999999987655
Q ss_pred CCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceEe
Q 001757 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1017)
Q Consensus 336 ~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~ 415 (1017)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccccc
Q 001757 416 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495 (1017)
Q Consensus 416 ~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~ 495 (1017)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhh-ccCccceeec-CCCCC
Q 001757 496 NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQL-WWGHQ 573 (1017)
Q Consensus 496 ~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRqr-~WG~p 573 (1017)
+++.++|||++++++++.+++.+ +++...+.|+..++.+.+||++ ++|||||||+ +||+|
T Consensus 133 ---------------e~~~~~~~ff~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGip 194 (319)
T cd00814 133 ---------------EWREEEHYFFRLSKFQDRLLEWL---EKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIP 194 (319)
T ss_pred ---------------EEEeeeeEEEEhHHHHHHHHHHH---HhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCee
Confidence 12335699999999999999998 6555568999999999999997 9999999999 99999
Q ss_pred cCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCCh----h
Q 001757 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD----D 649 (1017)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~----d 649 (1017)
+|.. +.+|++|||||.+.|++..+++.+.. .
T Consensus 195 vp~~---------------------------------------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~ 229 (319)
T cd00814 195 VPLD---------------------------------------------PGKVIYVWFDALIGYISATGYYNEEWGNSWW 229 (319)
T ss_pred CCCC---------------------------------------------CCcEEEEehhhHHHHHHHcccccccccchhh
Confidence 9941 23799999999999999999876432 3
Q ss_pred hhhhCCccccceeecccch----HHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhH
Q 001757 650 LKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1017)
Q Consensus 650 ~~~~~P~dl~~~G~Dil~f----W~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l 725 (1017)
+...+|.++++.|+||++| |++.++. .|..|++.+++||+++ .+|+|||||+||+|+|.++++
T Consensus 230 ~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~-----~~~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~------- 296 (319)
T cd00814 230 WKDGWPELVHFIGKDIIRFHAIYWPAMLLG-----AGLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLE------- 296 (319)
T ss_pred hhcCCCceEEEEeechhhhhHHHHHHHHHh-----CCCCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHH-------
Confidence 5667899999999999996 5553322 2345679999999999 569999999999999999998
Q ss_pred HHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001757 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1017)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1017)
.||+|++||+|++.++.++|.||
T Consensus 297 ------------------------------~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 297 ------------------------------RYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred ------------------------------HcCchHHHHHHHhcCCCCCCCCC
Confidence 89999999999999999999987
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9.9e-56 Score=496.42 Aligned_cols=296 Identities=29% Similarity=0.480 Sum_probs=255.9
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHH
Q 001757 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1017)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~ 255 (1017)
+|+|++|||||||.+||||+++++++|+++||+||+|++|.+++|+|+||+|++..+++ .|.+
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~-----~g~~------------ 63 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK-----IGRD------------ 63 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHH-----cCCC------------
Confidence 69999999999999999999999999999999999999999999999999999887764 3443
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccccccC
Q 001757 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1017)
Q Consensus 256 ~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~~~~ 335 (1017)
|.+|++++.+.++++|++||+++||++.+.|++|.|.++|+++|.+|+++|+||++..+|+||
T Consensus 64 ~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~----------------- 126 (314)
T cd00812 64 PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC----------------- 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee-----------------
Confidence 679999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceEe
Q 001757 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1017)
Q Consensus 336 ~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~ 415 (1017)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccccc
Q 001757 416 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495 (1017)
Q Consensus 416 ~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~ 495 (1017)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCeeeeeccccceeec--chHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCC
Q 001757 496 NEMRLGLCSRSNDVVEPMIKPQWYVNC--NSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQ 573 (1017)
Q Consensus 496 ~~~~~p~c~Rs~~~i~~~~~~QWFi~~--~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~p 573 (1017)
+.++|||+++ +++++++.+.+ + ++.+.|+..++.+.+||+ ||||+.||+|
T Consensus 127 -----------------~~~~~~f~~l~~~~~~~~l~~~l---~--~~~~~p~~~~~~~~~~l~------isR~~~wGip 178 (314)
T cd00812 127 -----------------KLLDQWFLKYSETEWKEKLLKDL---E--KLDGWPEEVRAMQENWIG------CSRQRYWGTP 178 (314)
T ss_pred -----------------CccceEEEEcCcHHHHHHHHHHH---H--hcCcCCHHHHHHHHHHhe------eeeecCCcCC
Confidence 0135899999 89999999999 4 445799999999999997 9999999999
Q ss_pred cCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccc---cCCC-----
Q 001757 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL---GWPD----- 645 (1017)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~l---g~p~----- 645 (1017)
+|. .+|+||||||.++++..+ ....
T Consensus 179 vP~-----------------------------------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~ 211 (314)
T cd00812 179 IPW-----------------------------------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGD 211 (314)
T ss_pred cCc-----------------------------------------------ccccccccccHHHHHHHHhcccccCcchhh
Confidence 993 268999999998543332 2111
Q ss_pred ---CChhhhhhCCccccceeecccchHHHHHHHHHhhhc--C---CCCceEEEEcceeeCCCCccccccCCcccCccccc
Q 001757 646 ---DTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLG--G---EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVI 717 (1017)
Q Consensus 646 ---~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~--~---~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi 717 (1017)
..++|++|||.|++++|+||++||...+++....+. | ..|++++++||+|. .+|+|||||+||+|+|.|++
T Consensus 212 ~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll 290 (314)
T cd00812 212 LEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAI 290 (314)
T ss_pred hhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHH
Confidence 234689999999999999999888644444433332 3 24679999999998 68999999999999999999
Q ss_pred cccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccH
Q 001757 718 NGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDI 780 (1017)
Q Consensus 718 ~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~ 780 (1017)
+ ++|+|++||||++.++ .|++|++
T Consensus 291 ~-------------------------------------~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 291 K-------------------------------------KYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred H-------------------------------------HhCcHHHHHHHHhcCC--cCCCCCC
Confidence 9 8999999999998777 6888864
No 45
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-43 Score=379.53 Aligned_cols=496 Identities=18% Similarity=0.226 Sum_probs=372.0
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHH-HHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChH
Q 001757 172 SSKPSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGRE 250 (1017)
Q Consensus 172 ~~k~~f~i~~pPPy~nG~LHiGHal~-~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e 250 (1017)
.++..-+|+..-||+|..+|+|+... ...+||++||.+.+|++.+|++|+|..|.+++..+- ++|.+|+
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkal-----eeg~tP~----- 80 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKAL-----EEGLTPQ----- 80 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHH-----HccCCHH-----
Confidence 34567899999999999999999886 556999999999999999999999999999877652 4788876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCcccccccc
Q 001757 251 QFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV 330 (1017)
Q Consensus 251 ~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EV 330 (1017)
+.+++|+...+....=+++++| .+-+|+.+...+.+|.+|.+|+++|++-...--+.+|..|++.|+|..|
T Consensus 81 -------elcdKyh~ihk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v 151 (567)
T KOG1247|consen 81 -------ELCDKYHGIHKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV 151 (567)
T ss_pred -------HHHHhcchhHHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhh
Confidence 5678888888888888998888 6667999999999999999999999999999999999999999999766
Q ss_pred ccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCc
Q 001757 331 DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRK 410 (1017)
Q Consensus 331 e~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ 410 (1017)
+. .+|+|+..
T Consensus 152 eg----------------------------------------------------------------------~cp~C~yd 161 (567)
T KOG1247|consen 152 EG----------------------------------------------------------------------KCPFCGYD 161 (567)
T ss_pred hc----------------------------------------------------------------------cCCCCCCc
Confidence 52 25665421
Q ss_pred cceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCc
Q 001757 411 IPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLY 490 (1017)
Q Consensus 411 ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~ 490 (1017)
|..|..+++||. .
T Consensus 162 --------------------------------------------~ARGDqcd~cG~-l---------------------- 174 (567)
T KOG1247|consen 162 --------------------------------------------DARGDQCDKCGK-L---------------------- 174 (567)
T ss_pred --------------------------------------------cccchhhhhhhh-h----------------------
Confidence 125777888881 1
Q ss_pred cccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCC-ceEEeccccHHHHHHHHh-hccCccceeec
Q 001757 491 RGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK-KLELIPRQYTAEWRRWLE-AIRDWCVSRQL 568 (1017)
Q Consensus 491 ~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~-~i~~~P~~~~~~~~~wl~-~l~DWcISRqr 568 (1017)
....+...|.|.-|....+++-+..-|++++++++++-+.+. ++. +-.| ..+.++....||. +++..||+|.+
T Consensus 175 --~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~--~~~~~~~W-S~Na~~it~sWlk~gl~pRCiTRDL 249 (567)
T KOG1247|consen 175 --VNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLR--RTLVEGDW-SQNAQNITRSWLKDGLKPRCITRDL 249 (567)
T ss_pred --cCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHH--hccccCCC-ccchHHHHHHHHHcccccccccccc
Confidence 112234468999998888999999999999999999988871 221 1123 4467788899995 69999999999
Q ss_pred CCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCCh
Q 001757 569 WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD 648 (1017)
Q Consensus 569 ~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~ 648 (1017)
-||+|+|. + + -...|++||||+-+.|+|.+. .-++
T Consensus 250 kWGtpVPl-----e-----------------------------~---------fk~KVfYVWFDA~IGYlsit~--~yt~ 284 (567)
T KOG1247|consen 250 KWGTPVPL-----E-----------------------------K---------FKDKVFYVWFDAPIGYLSITK--NYTD 284 (567)
T ss_pred ccCCCcCh-----h-----------------------------h---------hcccEEEEEEcCcceEEEeeh--hhhH
Confidence 99999994 0 0 134799999999999888764 1247
Q ss_pred hhhhhCCcc-----ccceeecccchHHHHHHHHHhhhcCCCC-ceEEEEcceeeCCCCccccccCCcccCccccccccch
Q 001757 649 DLKAFYPTS-----VLETGHDILFFWVARMVMLGIKLGGEVP-FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISL 722 (1017)
Q Consensus 649 d~~~~~P~d-----l~~~G~Dil~fW~a~~~~~~~~l~~~~P-fk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l 722 (1017)
+|++||-.- +.+.|+|..-|+-..+-..-+....+.+ -+++.+.-++ .-+..|+|||+|-+|-..++.++
T Consensus 285 ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYL-nyE~gKFSKSrgvGvFG~~aqd~--- 360 (567)
T KOG1247|consen 285 EWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYL-NYEDGKFSKSRGVGVFGNDAQDT--- 360 (567)
T ss_pred HHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhhh-ccccCcccccccccccccccccC---
Confidence 888888432 4556888765532222111111111112 1122222222 23556999999999998888763
Q ss_pred hhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH--HHHHHHHHHHHHHHH
Q 001757 723 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFS 800 (1017)
Q Consensus 723 ~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~--~r~f~nkl~N~~rf~ 800 (1017)
..++|+.||||+...+.++|.+|+++.+.. ...++|.|.|++..+
T Consensus 361 ---------------------------------gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~ 407 (567)
T KOG1247|consen 361 ---------------------------------GIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRV 407 (567)
T ss_pred ---------------------------------CCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHH
Confidence 466999999999999999999999998753 456888899888776
Q ss_pred HhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcch
Q 001757 801 MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAF 880 (1017)
Q Consensus 801 l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~ 880 (1017)
+......|+.. ++.-.+..-|+-++..++.+..+..++||.-.+++|++.+++. ....|.||+..+.+-.. .+
T Consensus 408 l~fv~~~~~g~--Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~i--s~~GNqylQ~~~~~k~~--~~- 480 (567)
T KOG1247|consen 408 LKFVAAKYNGV--VPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEI--SRRGNQYLQENTDNKLY--EE- 480 (567)
T ss_pred HHHHHHhhCCc--ccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHhcccccchh--hh-
Confidence 66544333211 1111344458889999999999999999999999999999997 68899999998754211 11
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhhchhhHHHHHHHHhCCC
Q 001757 881 ASERSAAQH---VLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 881 ~~~r~~a~~---~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
.|..+-. +-..++-.+..||+||||.++.+|...|.-
T Consensus 481 --~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 481 --SRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred --cccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCC
Confidence 2222222 234445556789999999999999998864
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.2e-41 Score=398.00 Aligned_cols=359 Identities=21% Similarity=0.293 Sum_probs=272.4
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCcc
Q 001757 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 245 (1017)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~ 245 (1017)
|+|.. .++.++++|. |+|+|.+|||||+++++.|+++||+||+||+|+|+.|+|.+|.+|...++ +.|.+
T Consensus 16 f~p~~-~~~v~~yvcg--Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~-----~~g~~-- 85 (463)
T PRK00260 16 FKPLE-PGKVKMYVCG--PTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRAN-----EEGES-- 85 (463)
T ss_pred cccCC-CCcceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHH-----HcCCC--
Confidence 44432 3445677666 45669999999999999999999999999999999999999999866553 34554
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCcc
Q 001757 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGA-SLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTA 324 (1017)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~-s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~Ta 324 (1017)
|+++++.+.+.+.++|++||+ +.||.... | .|...+++++.+|+++|++|++..+|+||+..-.
T Consensus 86 ----------~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~-t---~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~- 150 (463)
T PRK00260 86 ----------IKELTERYIAAFHEDMDALNVLPPDIEPRA-T---EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFP- 150 (463)
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCCCCCccccc-c---ccHHHHHHHHHHHHHCCCEEEecCeEEEeccccc-
Confidence 568899999999999999999 56764322 2 4888899999999999999999999999987321
Q ss_pred ccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeec
Q 001757 325 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 404 (1017)
Q Consensus 325 Lsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~ 404 (1017)
.| |. |.|.....
T Consensus 151 --------------------~y------g~------------------------------------------ls~~~~~~ 162 (463)
T PRK00260 151 --------------------DY------GK------------------------------------------LSGRNLDE 162 (463)
T ss_pred --------------------cc------cc------------------------------------------CCCCCHHH
Confidence 11 21 11110000
Q ss_pred CCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001757 405 PFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1017)
Q Consensus 405 P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L 484 (1017)
-..+.. |+.+.+ -++|.||.++|+. .+|.
T Consensus 163 ~~~~~~---------~~~~~~--------K~~~~DF~Lwk~~----------------~~~~------------------ 191 (463)
T PRK00260 163 LQAGAR---------VEVAEE--------KRDPLDFALWKAA----------------KPGE------------------ 191 (463)
T ss_pred HhccCc---------CCcccC--------CCCccccceecCC----------------CCCC------------------
Confidence 000000 111111 3667777776532 1110
Q ss_pred HHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccc
Q 001757 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCV 564 (1017)
Q Consensus 485 ~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcI 564 (1017)
| +|
T Consensus 192 ----------------~-~w------------------------------------------------------------ 194 (463)
T PRK00260 192 ----------------P-SW------------------------------------------------------------ 194 (463)
T ss_pred ----------------C-CC------------------------------------------------------------
Confidence 0 11
Q ss_pred eeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCC
Q 001757 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1017)
Q Consensus 565 SRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p 644 (1017)
.-.||.--|-|+++++- +-...+|
T Consensus 195 --~s~~g~grpgWhiecsa----------------------------------------------------m~~~~lg-- 218 (463)
T PRK00260 195 --ESPWGKGRPGWHIECSA----------------------------------------------------MSTKYLG-- 218 (463)
T ss_pred --CCCCCCCCCChhHHHHH----------------------------------------------------HHHHhcC--
Confidence 01467777888875320 0001122
Q ss_pred CCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhh
Q 001757 645 DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1017)
Q Consensus 645 ~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~ 724 (1017)
-|.|++.+|.|++|.|...+++.+.+++| .||.++++|+.+++.+|+|||||+||+|+|.|+++
T Consensus 219 ---------~~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~------ 282 (463)
T PRK00260 219 ---------ETFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK------ 282 (463)
T ss_pred ---------CCcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHH------
Confidence 26789999999999999999999999999 89999999988889999999999999999999998
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001757 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 804 (1017)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l 804 (1017)
+||+|++||++++ +...++++|+.+.+...+++++++||+++++..
T Consensus 283 -------------------------------~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-- 328 (463)
T PRK00260 283 -------------------------------KYDPEVLRFFLLS-AHYRSPLNFSEEALEQAKKALERLYNALAETAL-- 328 (463)
T ss_pred -------------------------------HcCchHhHHHHHh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 8999999999996 667889999999999999999999999998741
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHhhHhHHHHHh
Q 001757 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIEA 868 (1017)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e-~~~f~~a~~~i~~f~~~~l~~~Yle~ 868 (1017)
...|+|++++++.++..+.++|+ +|+++.|+..|++|+ ...|.|++.
T Consensus 329 ---------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv--~~~n~~~~~ 376 (463)
T PRK00260 329 ---------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELA--REINRALET 376 (463)
T ss_pred ---------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHHHHhhc
Confidence 12568999999999999999995 899999999999984 445677653
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=4.6e-36 Score=362.69 Aligned_cols=380 Identities=17% Similarity=0.255 Sum_probs=280.6
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHH-hCCCeeeeecccCccChhHHHHHHHHHHHHhcCCc
Q 001757 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRR-MSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTR 244 (1017)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~r-m~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~ 244 (1017)
|.|.. .++=.+|+|.|-+| +.+|||||++++..|++.||.| +.||+|.|++|+|.||-.|...+++ .|++.
T Consensus 53 f~p~~-~~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~-----~g~~~ 124 (651)
T PTZ00399 53 FVPQN-GRQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRARE-----EKLSI 124 (651)
T ss_pred cccCC-CCeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHH-----hCCCc
Confidence 55433 23348999998888 9999999999999999999999 9999999999999999998766643 46651
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCcc
Q 001757 245 HDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTA 324 (1017)
Q Consensus 245 ~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~Ta 324 (1017)
++++++.|.+.+.++|++|||..+ ..+.|. .+|...|..++.+|.++|++|.+..-|+++.+.
T Consensus 125 -----------~~el~~~~~~~f~~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~--- 187 (651)
T PTZ00399 125 -----------FLELARKWEKEFFEDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA--- 187 (651)
T ss_pred -----------HHHHHHHHHHHHHHHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh---
Confidence 247788889999999999999987 444444 799999999999999999999987666666531
Q ss_pred ccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeec
Q 001757 325 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 404 (1017)
Q Consensus 325 Lsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~ 404 (1017)
|... ...|..| .
T Consensus 188 ---------------------f~~~-----------------------------------------~~~Yg~L------~ 199 (651)
T PTZ00399 188 ---------------------FRKA-----------------------------------------GHVYPKL------E 199 (651)
T ss_pred ---------------------cccc-----------------------------------------hhhHHhh------C
Confidence 0000 0001111 1
Q ss_pred CCCCCccceEecCccccCCCCCCce-ecC-CCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHH
Q 001757 405 PFNGRKIPIICDAILVDPKFGTGAV-KIT-PAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNE 482 (1017)
Q Consensus 405 P~~~~~ipIi~~~~~V~~~~GTG~V-~~~-PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~ 482 (1017)
|-..+. ...+..|.|.| ... =..++.||.+++..
T Consensus 200 p~~~~~--------~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~------------------------------------ 235 (651)
T PTZ00399 200 PESVAD--------EDRIAEGEGALGKVSGEKRSPNDFALWKAS------------------------------------ 235 (651)
T ss_pred hhhcCC--------HHHHhcccCCccccCcCCCCCccHHhhCCC------------------------------------
Confidence 111110 12223344422 112 14556666555311
Q ss_pred HHHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCc
Q 001757 483 ALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDW 562 (1017)
Q Consensus 483 ~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DW 562 (1017)
..++.. |
T Consensus 236 ------------------------------------------------------kpgep~-------------------W 242 (651)
T PTZ00399 236 ------------------------------------------------------KPGEPS-------------------W 242 (651)
T ss_pred ------------------------------------------------------CCCCCC-------------------C
Confidence 001110 2
Q ss_pred cceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCcccccccc
Q 001757 563 CVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLG 642 (1017)
Q Consensus 563 cISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg 642 (1017)
- -.||---|.|++++.- +-...+|
T Consensus 243 ~----SpwG~GrPGWHiECsa----------------------------------------------------m~~~~lg 266 (651)
T PTZ00399 243 D----SPWGKGRPGWHIECSA----------------------------------------------------MASNILG 266 (651)
T ss_pred C----CCCCCCCCCchHHHHH----------------------------------------------------HHHHHcC
Confidence 1 2577778888875320 0011122
Q ss_pred CCCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEc-ceeeCCCCccccccCCcccCccccccccc
Q 001757 643 WPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGIS 721 (1017)
Q Consensus 643 ~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~H-g~v~D~~G~KMSKSlGNvIdP~dvi~g~~ 721 (1017)
+|.|++..|.|++|.+.-.-++.+.+++|+.||.++++| |||. .+|+|||||+||+|+|.|+|+
T Consensus 267 -----------~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLe--- 331 (651)
T PTZ00399 267 -----------DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALS--- 331 (651)
T ss_pred -----------CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEE-eccchhhhcCCCcccHHHHHH---
Confidence 378999999999999999999999999999999999999 9975 899999999999999999999
Q ss_pred hhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Q 001757 722 LEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSM 801 (1017)
Q Consensus 722 l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l 801 (1017)
+||+|+|||+|++. ....|++|+.+.+....+..++++|.+..+.
T Consensus 332 ----------------------------------kygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~ 376 (651)
T PTZ00399 332 ----------------------------------KYTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKVFFNFFANVK 376 (651)
T ss_pred ----------------------------------HcChHHHHHHHHhc-CCCCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999964 8888999999999988888888999887765
Q ss_pred hhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHhhHhHHHHH
Q 001757 802 SKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIE 867 (1017)
Q Consensus 802 ~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~-e~~~f~~a~~~i~~f~~~~l~~~Yle 867 (1017)
..+.....+. .......|+|++..++.+...+.++| ++|+++.|+..|++|+ ..+|.|++
T Consensus 377 s~l~~~~~~~----~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv--~~~N~yi~ 437 (651)
T PTZ00399 377 IKLRESELTS----PQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLI--SATNTYLN 437 (651)
T ss_pred HHHhhccccc----cccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHHHHHHh
Confidence 5443211110 11235679999999999999999999 7899999999999995 56899996
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=5.2e-36 Score=351.84 Aligned_cols=355 Identities=19% Similarity=0.243 Sum_probs=255.3
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCcc
Q 001757 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 245 (1017)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~ 245 (1017)
|+|.. .++.+++++.| +|+|.+|||||++++..|+++||+||+||+|.|+.|+|.||.+|...++ +.|+++
T Consensus 14 f~p~~-~~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~-----~~g~~~- 84 (465)
T TIGR00435 14 FEPLV-QGKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAR-----ENGESV- 84 (465)
T ss_pred cccCC-CCcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHH-----HcCCCH-
Confidence 44433 34567777765 7778999999999999999999999999999999999999999866553 357765
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc-eeeeecCCCCcc
Q 001757 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL-RLVNWDCVLRTA 324 (1017)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~-~~V~wcp~~~Ta 324 (1017)
+++++.+.+.+.+++++||+++|+-....| .|...+.++|.+|.++|++|++. ..|+||+.+-.
T Consensus 85 -----------~e~a~~~~~~f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~- 149 (465)
T TIGR00435 85 -----------YEVSERFIEAYFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK- 149 (465)
T ss_pred -----------HHHHHHHHHHHHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc-
Confidence 367889999999999999999995333333 78899999999999999999998 89999987521
Q ss_pred ccccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeec
Q 001757 325 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 404 (1017)
Q Consensus 325 Lsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~ 404 (1017)
+| |.| .|..+
T Consensus 150 ------~y--------------------G~l------------------------------------------s~~~~-- 159 (465)
T TIGR00435 150 ------DY--------------------GKL------------------------------------------SKQDL-- 159 (465)
T ss_pred ------hh--------------------ccC------------------------------------------CCCCH--
Confidence 11 111 11000
Q ss_pred CCCCCccceEecCccccCCCCCCceecCC-CCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHH
Q 001757 405 PFNGRKIPIICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEA 483 (1017)
Q Consensus 405 P~~~~~ipIi~~~~~V~~~~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~ 483 (1017)
-++..|.++ -..+ -++|.||.+++
T Consensus 160 ---------------~~~~~~~~~-~~~~~K~~p~DF~Lwk--------------------------------------- 184 (465)
T TIGR00435 160 ---------------DQLEAGARV-DVDEAKRNKLDFVLWK--------------------------------------- 184 (465)
T ss_pred ---------------HHHhccccc-CcccccCCCCCceeeC---------------------------------------
Confidence 000001110 0000 24445554432
Q ss_pred HHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCcc
Q 001757 484 LKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWC 563 (1017)
Q Consensus 484 L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWc 563 (1017)
+..+ +++ .|
T Consensus 185 ----------------------~~~~-----------------------------~~~-------------------~w- 193 (465)
T TIGR00435 185 ----------------------SSKE-----------------------------GEP-------------------KW- 193 (465)
T ss_pred ----------------------CCCC-----------------------------CCC-------------------CC-
Confidence 2210 111 11
Q ss_pred ceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccC
Q 001757 564 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW 643 (1017)
Q Consensus 564 ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~ 643 (1017)
.-.||.--|-|+++++- +-...+|
T Consensus 194 ---~spwG~grpgWhiecsa----------------------------------------------------m~~~~lg- 217 (465)
T TIGR00435 194 ---DSPWGKGRPGWHIECSA----------------------------------------------------MNDKYLG- 217 (465)
T ss_pred ---cCCCCCCCCCcHhHHHH----------------------------------------------------HHHHhcC-
Confidence 12588888999875320 0001122
Q ss_pred CCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchh
Q 001757 644 PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723 (1017)
Q Consensus 644 p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~ 723 (1017)
.|.|++.+|.|++|.|....++.+.+++|+ ||.++++|+.+++.+|+|||||+||+|+|.|+++
T Consensus 218 ----------~~~Dih~gG~Dl~fpHhene~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~----- 281 (465)
T TIGR00435 218 ----------DQIDIHGGGVDLIFPHHENEIAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLK----- 281 (465)
T ss_pred ----------CCceeeccccccccchHHHHHHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHH-----
Confidence 256899999999999999999999999995 7788888877677999999999999999999998
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 001757 724 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSK 803 (1017)
Q Consensus 724 ~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~ 803 (1017)
+||+|++|||+++ +...++++|+.+.+...++++++|||+++++...
T Consensus 282 --------------------------------~~~~dalR~~ll~-~~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~ 328 (465)
T TIGR00435 282 --------------------------------NYDPEILRYFLLS-VHYRSPLDFSEELLEAAKNALERLYKALRVLDTT 328 (465)
T ss_pred --------------------------------HCCHHHHHHHHHh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999996 4678899999999999999999999999987543
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHH
Q 001757 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1017)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1017)
+.... .. . .. .......+.+.+.++|+ ++++..|+..|++++
T Consensus 329 ~~~~~--~~--~-~~-------~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~ 371 (465)
T TIGR00435 329 LAYSG--NQ--S-LN-------KFPDEKEFEARFVEAMDDDLNTANALAVLFELA 371 (465)
T ss_pred hcccc--cc--c-cc-------cchhHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 32100 00 0 00 00122345566777774 599999999999985
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-34 Score=329.12 Aligned_cols=342 Identities=18% Similarity=0.171 Sum_probs=253.5
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHH
Q 001757 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1017)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1017)
+-++++|-|.|| |.+||||+++++..|++.||+|++||+|.|+.|+|.||-+|+..+++ +|+++
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~-----~G~~~--------- 72 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR-----DGVDW--------- 72 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHH-----cCCCH---------
Confidence 347888998888 99999999999999999999999999999999999999999877754 57775
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-ccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcce----eeeecCCCCcccccc
Q 001757 254 SEVWKWKDEYGGTILRQQRRLGA-SLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR----LVNWDCVLRTAISDI 328 (1017)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~-s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~----~V~wcp~~~TaLsd~ 328 (1017)
+++++.|.+.+.+.|++||+ +.| ....|++. ...+++++.+|.++|++|+... -|+++...
T Consensus 73 ---~e~a~~~~~~f~~d~~~Lni~~~~--~~~raTe~--i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~------- 138 (384)
T PRK12418 73 ---RDLAEREIALFREDMEALRVLPPR--DYVGAVES--IPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA------- 138 (384)
T ss_pred ---HHHHHHHHHHHHHHHHHhCCCCCC--ccccCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc-------
Confidence 47889999999999999997 565 66677764 8999999999999999999887 68887652
Q ss_pred ccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCC
Q 001757 329 EVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNG 408 (1017)
Q Consensus 329 EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~ 408 (1017)
+|.| |.+ .|...
T Consensus 139 --------------~~~Y------G~l------------------------------------------s~~~~------ 150 (384)
T PRK12418 139 --------------TPQF------GYE------------------------------------------SGYDR------ 150 (384)
T ss_pred --------------hhhc------ccc------------------------------------------cCCCH------
Confidence 1111 211 11000
Q ss_pred CccceEecCccccCCC--CCCceec-CC-CCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001757 409 RKIPIICDAILVDPKF--GTGAVKI-TP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1017)
Q Consensus 409 ~~ipIi~~~~~V~~~~--GTG~V~~-~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L 484 (1017)
-++.. |...|-. .+ -.+|.||.++|..
T Consensus 151 -----------~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~-------------------------------------- 181 (384)
T PRK12418 151 -----------ATMLELFAERGGDPDRPGKRDPLDALLWRAA-------------------------------------- 181 (384)
T ss_pred -----------HHHHhhhcccccCcccccCCCcccceeeccC--------------------------------------
Confidence 00000 0000000 01 2445555444311
Q ss_pred HHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccc
Q 001757 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCV 564 (1017)
Q Consensus 485 ~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcI 564 (1017)
+.+++. |
T Consensus 182 ----------------------------------------------------~~~~~~-------------------w-- 188 (384)
T PRK12418 182 ----------------------------------------------------RPGEPS-------------------W-- 188 (384)
T ss_pred ----------------------------------------------------CCCCCc-------------------c--
Confidence 001111 1
Q ss_pred eeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCC
Q 001757 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1017)
Q Consensus 565 SRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p 644 (1017)
.--||---|-|+++++- +-...+|
T Consensus 189 --~spwG~GRPGWHiECsa----------------------------------------------------m~~~~lg-- 212 (384)
T PRK12418 189 --PSPFGPGRPGWHIECSA----------------------------------------------------IALNRLG-- 212 (384)
T ss_pred --cCCCCCCCChhHHHHHH----------------------------------------------------HHHHHcC--
Confidence 22688888999876430 1111222
Q ss_pred CCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhh
Q 001757 645 DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1017)
Q Consensus 645 ~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~ 724 (1017)
-|.|++..|.|++|.|...+++.+.+++|+.||.++++||.+++.+|+|||||+||+|+|.++++
T Consensus 213 ---------~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~------ 277 (384)
T PRK12418 213 ---------SGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRA------ 277 (384)
T ss_pred ---------CCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHh------
Confidence 25689999999999999999999999999999999999999999999999999999999999764
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCch--HHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 001757 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD--ALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMS 802 (1017)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaD--aLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~ 802 (1017)
+|.| ++|||++ .+...++++|+.+.+...++.+++++|++...
T Consensus 278 --------------------------------~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~-- 322 (384)
T PRK12418 278 --------------------------------AGVDPAAIRLALL-AGHYRADREWTDAVLAEAEARLARWRAAAALP-- 322 (384)
T ss_pred --------------------------------ccCChhheeEEEe-ccCCCCCcccCHHHHHHHHHHHHHHHHHHhcc--
Confidence 5555 9999987 67788899999999999999999999876421
Q ss_pred hhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHhhHhHHHH
Q 001757 803 KLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFI 866 (1017)
Q Consensus 803 ~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e-~~~f~~a~~~i~~f~~~~l~~~Yl 866 (1017)
.. . .+..+.+.+.++|+ ++++..|+..|++++ ...|.|+
T Consensus 323 --~~-----------~----------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~--~~~n~~~ 362 (384)
T PRK12418 323 --AG-----------P----------DAADVVARVRAALADDLDTPGALAAVDGWA--TDALEGG 362 (384)
T ss_pred --cc-----------c----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH--HHHHhcc
Confidence 00 0 12344677888885 499999999999985 4466664
No 50
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.2e-34 Score=330.63 Aligned_cols=337 Identities=17% Similarity=0.160 Sum_probs=249.2
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHH
Q 001757 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1017)
Q Consensus 173 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f 252 (1017)
++-++++|.|.|| +.+||||+++++..|+++||+|++||+|.|+.|+|+||-+|+..+++ +|+++.
T Consensus 35 ~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~-----~g~t~~------- 100 (411)
T TIGR03447 35 PEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAER-----DGVDWR------- 100 (411)
T ss_pred CcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHH-----cCCCHH-------
Confidence 3457999999999 89999999999999999999999999999999999999999877754 577654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cccCCccccCChhhHHHHHHHHHHHhhCCcEEEcce----eeeecCCCCccccc
Q 001757 253 VSEVWKWKDEYGGTILRQQRRLGAS-LDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR----LVNWDCVLRTAISD 327 (1017)
Q Consensus 253 ~~~~~~~~~~~~~~i~~ql~rlG~s-~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~----~V~wcp~~~TaLsd 327 (1017)
++++.|...+.+.+++||+. .| .+..|++. ...+++++.+|.++|++|...- -|+++.+.
T Consensus 101 -----ela~~y~~~f~~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~------ 165 (411)
T TIGR03447 101 -----ELGTSQIDLFREDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA------ 165 (411)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc------
Confidence 77899999999999999986 55 55566665 7999999999999999998774 57777641
Q ss_pred cccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCC
Q 001757 328 IEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFN 407 (1017)
Q Consensus 328 ~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~ 407 (1017)
+|. +|.| .|....
T Consensus 166 ---------------~~~------YG~L------------------------------------------s~~~~~---- 178 (411)
T TIGR03447 166 ---------------TEQ------FGYE------------------------------------------SGYDRA---- 178 (411)
T ss_pred ---------------hhc------cccc------------------------------------------cCCCHH----
Confidence 111 1211 111000
Q ss_pred CCccceEecCccccCCCCCCc--eec-CC-CCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHH
Q 001757 408 GRKIPIICDAILVDPKFGTGA--VKI-TP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEA 483 (1017)
Q Consensus 408 ~~~ipIi~~~~~V~~~~GTG~--V~~-~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~ 483 (1017)
++..|.|. |-. .+ -.+|.||.++|+.+
T Consensus 179 -------------~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~------------------------------------ 209 (411)
T TIGR03447 179 -------------TMLELFAERGGDPDRPGKRDPLDALLWRAAR------------------------------------ 209 (411)
T ss_pred -------------HHHhhhcccccCcccccCCCCcccceeCCCC------------------------------------
Confidence 00000000 000 01 24566665554210
Q ss_pred HHHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCcc
Q 001757 484 LKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWC 563 (1017)
Q Consensus 484 L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWc 563 (1017)
.+++. |
T Consensus 210 ------------------------------------------------------~~e~~-------------------w- 215 (411)
T TIGR03447 210 ------------------------------------------------------EGEPS-------------------W- 215 (411)
T ss_pred ------------------------------------------------------CCCCC-------------------c-
Confidence 01111 1
Q ss_pred ceeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccC
Q 001757 564 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW 643 (1017)
Q Consensus 564 ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~ 643 (1017)
.--||.--|-|+++++- +-...+|
T Consensus 216 ---~spwG~GRPGWHiECsa----------------------------------------------------m~~~~lg- 239 (411)
T TIGR03447 216 ---DSPFGPGRPGWHIECSA----------------------------------------------------IATNRLG- 239 (411)
T ss_pred ---cCCCCCCCChhHHHHHH----------------------------------------------------HHHHHcC-
Confidence 12588888999886431 0011122
Q ss_pred CCCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchh
Q 001757 644 PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723 (1017)
Q Consensus 644 p~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~ 723 (1017)
-+.|++..|.|++|.|....++.+.+++|+.||.++++|+..++.+|+|||||+||+|+|.++++
T Consensus 240 ----------~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~----- 304 (411)
T TIGR03447 240 ----------AGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRA----- 304 (411)
T ss_pred ----------CceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHh-----
Confidence 13478999999999999999999999999999999999999999999999999999999999876
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 001757 724 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMS 802 (1017)
Q Consensus 724 ~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~-~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~ 802 (1017)
. +++|++|||++ ++...++++|+.+.+++.++.++++++++..+
T Consensus 305 --------------------------------~g~dp~~lRl~ll-s~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~-- 349 (411)
T TIGR03447 305 --------------------------------AGVDPAAIRLGLL-AGHYRQDRDWTDAVLAEAEARLARWRAALAAT-- 349 (411)
T ss_pred --------------------------------cCCCcccEEEEEe-cCCCCCCCccCHHHHHHHHHHHHHHHHHHhhc--
Confidence 3 78889999998 57788899999999999999999998877421
Q ss_pred hhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHH
Q 001757 803 KLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1017)
Q Consensus 803 ~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1017)
.. . .+..+...+.++|+ ++++..|+..|++++
T Consensus 350 --~~-----------~----------~~~~~~~~~~~al~dDln~p~a~~~l~~~~ 382 (411)
T TIGR03447 350 --DA-----------P----------DATDLIARLRQHLANDLDTPAALAAVDNWA 382 (411)
T ss_pred --cc-----------c----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00 0 12334556667774 599999999998875
No 51
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-31 Score=312.85 Aligned_cols=355 Identities=17% Similarity=0.189 Sum_probs=252.2
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeec----------ccCccChhHHHHHHHHHHHHhcCCccccChHHH
Q 001757 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVP----------GMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1017)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~p----------G~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f 252 (1017)
=|+|++.+|||||++++..|++.||.|++||+|.|+. |.|+||-.|...++ +.|+++
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~-----~~g~~~-------- 96 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQ-----EHGKSV-------- 96 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHH-----HcCCCH--------
Confidence 3899999999999999999999999999999999996 99999999866554 357765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCcccccccccc
Q 001757 253 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDY 332 (1017)
Q Consensus 253 ~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe~ 332 (1017)
.++++.|.+.+.+.+++||+..+ .++|..++|...+++++.+|.++|++|.+..-|+||+..
T Consensus 97 ----~e~a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----------- 158 (490)
T PRK14536 97 ----LEIAAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----------- 158 (490)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc-----------
Confidence 37789999999999999999987 344667999999999999999999999999999999842
Q ss_pred ccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccc
Q 001757 333 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 412 (1017)
Q Consensus 333 ~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ip 412 (1017)
+|. |..|.|...
T Consensus 159 ----------~~~------------------------------------------------YG~Ls~~~~---------- 170 (490)
T PRK14536 159 ----------FPS------------------------------------------------YGSLASAAV---------- 170 (490)
T ss_pred ----------ccc------------------------------------------------hhhhcCCCH----------
Confidence 111 111111100
Q ss_pred eEecCccccCCCCCCceecCC-CCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcc
Q 001757 413 IICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 491 (1017)
Q Consensus 413 Ii~~~~~V~~~~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~ 491 (1017)
-++..|.. |-..+ -++|.||.+++...
T Consensus 171 -------~~l~~g~~-v~~~~~K~np~DFaLWK~~~-------------------------------------------- 198 (490)
T PRK14536 171 -------EDLQAGAR-IEHDTNKRNPHDFVLWFTRS-------------------------------------------- 198 (490)
T ss_pred -------HHhhcCCc-CCCCCCCCCchhchhccccc--------------------------------------------
Confidence 00000100 00001 23455555443110
Q ss_pred ccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCC
Q 001757 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 571 (1017)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG 571 (1017)
...+.++++.-.||
T Consensus 199 ------------------------------------------------------------------~~~~~~~~W~SpWG 212 (490)
T PRK14536 199 ------------------------------------------------------------------KFENHALTWDSPWG 212 (490)
T ss_pred ------------------------------------------------------------------CCCCCCCcccCCCC
Confidence 00112234455799
Q ss_pred CCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCChhhh
Q 001757 572 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLK 651 (1017)
Q Consensus 572 ~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~ 651 (1017)
...|-|+++++- +....+|
T Consensus 213 ~GRPGWHIECsa----------------------------------------------------Ms~~~lg--------- 231 (490)
T PRK14536 213 RGYPGWHIECSA----------------------------------------------------MSMKYLG--------- 231 (490)
T ss_pred CCCCChHHHHHH----------------------------------------------------HHHHHcC---------
Confidence 999999875431 0011112
Q ss_pred hhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhc
Q 001757 652 AFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE 731 (1017)
Q Consensus 652 ~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~ 731 (1017)
-..|++..|.|++|+|.-..++.+.+++|+ ||-++++|+..+..+|+|||||+||+|++.|+++
T Consensus 232 --~~~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~------------- 295 (490)
T PRK14536 232 --EQCDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQE------------- 295 (490)
T ss_pred --CceeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHh-------------
Confidence 023899999999999999999999988886 8899999988888999999999999999999998
Q ss_pred CCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 001757 732 GNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVP 810 (1017)
Q Consensus 732 ~nl~~~e~~~a~~~~~~~~p~~i~~-~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p 810 (1017)
+ |+++++||++++ +....+++|+.+.+...++-+.+|.|++.-+....... .+
T Consensus 296 ------------------------~g~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~-~~ 349 (490)
T PRK14536 296 ------------------------KGFQPLDYRFFLLG-GHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARAT-TG 349 (490)
T ss_pred ------------------------cCCCHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cc
Confidence 5 899999999987 77788999999999988888888888776543222110 00
Q ss_pred CCCCCC-CC-CChhhHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHH
Q 001757 811 PLKLHP-HN-LPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1017)
Q Consensus 811 ~~~~~~-~~-~~~~Drwil~~L~~~i~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1017)
...... .. ....+.-....+..+...+.++|+ +++...|+..|++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~ 399 (490)
T PRK14536 350 SVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLV 399 (490)
T ss_pred cccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 000000 00 000000011234566778888885 599999999999985
No 52
>PLN02946 cysteine-tRNA ligase
Probab=99.97 E-value=5.2e-31 Score=310.39 Aligned_cols=368 Identities=17% Similarity=0.185 Sum_probs=260.7
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCcc
Q 001757 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 245 (1017)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~ 245 (1017)
|.|.. .++-..|+|- |+|-|.+|||||++++..|++.||.|+.||+|.|+.|+|.||-+|...+++ .|+++
T Consensus 73 f~P~~-~~~v~~Y~CG--pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~-----~g~~~- 143 (557)
T PLN02946 73 FKPKV-EGKVGMYVCG--VTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANE-----LGEDP- 143 (557)
T ss_pred cccCC-CCceeEEEeC--CccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHH-----cCCCH-
Confidence 44433 2333455553 788999999999999999999999999999999999999999998776643 57665
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccc
Q 001757 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAI 325 (1017)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaL 325 (1017)
+++++.|.+.+.+.+++||+. + ..+.|...+|...+++++.+|.++|++|.+..-|+||+..
T Consensus 144 -----------~ela~~y~~~f~~d~~~LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~---- 205 (557)
T PLN02946 144 -----------ISLSRRYCEEFLSDMAYLHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK---- 205 (557)
T ss_pred -----------HHHHHHHHHHHHHHHHHCCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc----
Confidence 478899999999999999987 3 4677888899999999999999999999999999999752
Q ss_pred cccccccccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecC
Q 001757 326 SDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHP 405 (1017)
Q Consensus 326 sd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P 405 (1017)
+|. |..|.|..+.
T Consensus 206 -----------------f~~------------------------------------------------YG~Ls~~~l~-- 218 (557)
T PLN02946 206 -----------------FPE------------------------------------------------YGKLSGRKLE-- 218 (557)
T ss_pred -----------------chh------------------------------------------------hhhcCCCChh--
Confidence 111 1122221100
Q ss_pred CCCCccceEecCccccCCCCCCceecCC-CCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001757 406 FNGRKIPIICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1017)
Q Consensus 406 ~~~~~ipIi~~~~~V~~~~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L 484 (1017)
++..|.. |...+ -.+|.||.++|+.+
T Consensus 219 ---------------~l~~g~r-v~~~~~K~np~DFaLWK~~k------------------------------------- 245 (557)
T PLN02946 219 ---------------DNRAGER-VAVDSRKKNPADFALWKAAK------------------------------------- 245 (557)
T ss_pred ---------------HhhcCCC-CCcccccCCccccceeccCC-------------------------------------
Confidence 0001111 00001 34566776664321
Q ss_pred HHcCCccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccc
Q 001757 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCV 564 (1017)
Q Consensus 485 ~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcI 564 (1017)
.++.. |
T Consensus 246 -----------------------------------------------------~ge~~-------------------W-- 251 (557)
T PLN02946 246 -----------------------------------------------------EGEPF-------------------W-- 251 (557)
T ss_pred -----------------------------------------------------CCCCC-------------------c--
Confidence 01111 1
Q ss_pred eeecCCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCC
Q 001757 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1017)
Q Consensus 565 SRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p 644 (1017)
.--||.--|-||++++- |-...+|
T Consensus 252 --~SPWG~GRPGWHIECSa----------------------------------------------------Ms~~~lG-- 275 (557)
T PLN02946 252 --DSPWGPGRPGWHIECSA----------------------------------------------------MSAAYLG-- 275 (557)
T ss_pred --cCCCCCCCCcHHHHHHH----------------------------------------------------HHHHHcC--
Confidence 12588888999986431 0111122
Q ss_pred CCChhhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEE-EEcceeeCCCCccccccCCcccCccccccccchh
Q 001757 645 DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKV-YLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723 (1017)
Q Consensus 645 ~~~~d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V-~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~ 723 (1017)
.+.|+|..|.|++|.+.-.-++.+.+..|. ||-+. +.||||. .+|+|||||+||+|++.|+++
T Consensus 276 ---------~~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~----- 339 (557)
T PLN02946 276 ---------HSFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVID----- 339 (557)
T ss_pred ---------CCeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHH-----
Confidence 245899999999999988888888887776 44444 4458887 999999999999999999998
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 001757 724 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSK 803 (1017)
Q Consensus 724 ~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~ 803 (1017)
+||+|++|||+++ +...++++|+.+.+....+-+.+++++++.+...
T Consensus 340 --------------------------------~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~ 386 (557)
T PLN02946 340 --------------------------------LYHPLALRLFLLG-THYRSPINYSDVQLESASERIFYIYQTLHDCEES 386 (557)
T ss_pred --------------------------------hcCccceeeeeec-cCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999987 5678899999999988888778888887765433
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHhhHhHHHHH
Q 001757 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIE 867 (1017)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e-~~~f~~a~~~i~~f~~~~l~~~Yle 867 (1017)
+........ ... .+.-+...+..+...+.++|+ +++...|+..|++++ ...|.++.
T Consensus 387 l~~~~~~~~-----~~~-~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~v--k~~N~~~~ 443 (557)
T PLN02946 387 LQQHDSTFE-----KDS-VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPL--KTINDLLH 443 (557)
T ss_pred hhhhccccc-----ccc-cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHHHHhh
Confidence 321100000 000 111123345667788888885 599999999999985 44566664
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.7e-30 Score=306.81 Aligned_cols=333 Identities=20% Similarity=0.303 Sum_probs=245.9
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHH
Q 001757 184 PNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEY 263 (1017)
Q Consensus 184 Py~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~ 263 (1017)
|+|-+.+|||||++++..|++.||.|++||+|.|+.|+|+||-+|...+++ .|+++ +++++.|
T Consensus 256 PTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e-----~G~sp------------~ela~~y 318 (699)
T PRK14535 256 MTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAE-----NGETI------------GELTARF 318 (699)
T ss_pred CcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHH-----cCCCH------------HHHHHHH
Confidence 778899999999999999999999999999999999999999998776653 57765 4778899
Q ss_pred HHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcce-eeeecCCCCccccccccccccCCCceeEe
Q 001757 264 GGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR-LVNWDCVLRTAISDIEVDYVDIPKREMRN 342 (1017)
Q Consensus 264 ~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~-~V~wcp~~~TaLsd~EVe~~~~~~~t~~~ 342 (1017)
.+.+.+.+++||++.| .++|...+|...+..++.+|.++|++|++.. -|+||+.+-
T Consensus 319 ~~~F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f-------------------- 375 (699)
T PRK14535 319 IQAMHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF-------------------- 375 (699)
T ss_pred HHHHHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc--------------------
Confidence 9999999999999988 3577778999999999999999999998743 688887631
Q ss_pred ccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCccceEecCccccC
Q 001757 343 VPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDP 422 (1017)
Q Consensus 343 vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~ipIi~~~~~V~~ 422 (1017)
|.| | .|.|... -++
T Consensus 376 -~~Y------G------------------------------------------~LS~~~~-----------------~~l 389 (699)
T PRK14535 376 -AAY------G------------------------------------------QLSGKSL-----------------DDL 389 (699)
T ss_pred -ccc------c------------------------------------------cccCCCh-----------------HHh
Confidence 111 2 1111100 000
Q ss_pred CCCCCceecCC-CCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccccccccccc
Q 001757 423 KFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLG 501 (1017)
Q Consensus 423 ~~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p 501 (1017)
..|.. |-..+ -++|.||.++|+.+ .
T Consensus 390 ~~g~r-ve~d~~Krnp~DFaLWK~sk----------------~------------------------------------- 415 (699)
T PRK14535 390 RAGER-VEVDGFKRDPLDFVLWKAAK----------------A------------------------------------- 415 (699)
T ss_pred cCCCc-cccccccCCccccceeccCC----------------C-------------------------------------
Confidence 00110 00011 35667776664321 0
Q ss_pred ccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceecc
Q 001757 502 LCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTL 581 (1017)
Q Consensus 502 ~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~ 581 (1017)
|+.. | .--||---|-|++++
T Consensus 416 -------------------------------------Gep~-------------------W----~SPWG~GRPGWHIEC 435 (699)
T PRK14535 416 -------------------------------------GEPA-------------------W----ESPWGNGRPGWHIEC 435 (699)
T ss_pred -------------------------------------CCCC-------------------c----cCCCCCCCCchHHHH
Confidence 1110 1 125888889998764
Q ss_pred CchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCChhhhhhCCccccce
Q 001757 582 EDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLET 661 (1017)
Q Consensus 582 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~ 661 (1017)
+- |....+| -+.|+|..
T Consensus 436 SA----------------------------------------------------Ms~~~LG-----------~~~DIHgG 452 (699)
T PRK14535 436 SA----------------------------------------------------MSENLFG-----------DTFDIHGG 452 (699)
T ss_pred HH----------------------------------------------------HHHHHcC-----------CcceeECC
Confidence 30 1111222 13489999
Q ss_pred eecccchHHHHHHHHHhhhcCCC---------------CceEEEEc-ceeeCCCCccccccCCcccCccccccccchhhH
Q 001757 662 GHDILFFWVARMVMLGIKLGGEV---------------PFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1017)
Q Consensus 662 G~Dil~fW~a~~~~~~~~l~~~~---------------Pfk~V~~H-g~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l 725 (1017)
|.|++|.+.-.-++.+.+.+|+. ||-+.++| |||. .+|+|||||+||+|+|.++++
T Consensus 453 G~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlLe------- 524 (699)
T PRK14535 453 GADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVLK------- 524 (699)
T ss_pred ccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHHH-------
Confidence 99999999999999888877762 57777777 6676 999999999999999999998
Q ss_pred HHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 001757 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLG 805 (1017)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~ 805 (1017)
+||+|++|||+++ +...++++|+.+.+++.++.+++++++++-+.. .
T Consensus 525 ------------------------------~ygpdalRl~lLs-shYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~-~- 571 (699)
T PRK14535 525 ------------------------------QYDPEVVRFFILR-AHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPA-A- 571 (699)
T ss_pred ------------------------------hCCHHHHHHHHHc-CCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhh-c-
Confidence 8999999999997 668889999999999999999999988754310 0
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHH
Q 001757 806 EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1017)
Q Consensus 806 ~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1017)
.+ . ....+..+.+.+.++|+ ++++..|+..|++++
T Consensus 572 ---~~----------~----~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lv 607 (699)
T PRK14535 572 ---EF----------M----LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607 (699)
T ss_pred ---cc----------h----hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 00 0 11234456677888885 599999999999885
No 54
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.97 E-value=2.9e-30 Score=273.79 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=82.0
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCcc
Q 001757 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 245 (1017)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~ 245 (1017)
|++.. +++.+++++.|.|| |.+||||++++++.|+++||+||+|++|+|+.|+|.||.||+..+++ .|+++
T Consensus 13 ~~p~~-~~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~-----~g~~p- 83 (213)
T cd00672 13 FVPLN-PGLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE-----EGLSW- 83 (213)
T ss_pred eecCC-CCCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH-----cCCCH-
Confidence 44433 35668999998888 78999999999999999999999999999999999999999888875 46654
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c
Q 001757 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASL-D 279 (1017)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~-D 279 (1017)
++|++.+.+.+++++++||++. |
T Consensus 84 -----------~e~~~~~~~~f~~~~~~l~i~~~d 107 (213)
T cd00672 84 -----------KEVADYYTKEFFEDMKALNVLPPD 107 (213)
T ss_pred -----------HHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5889999999999999999988 5
No 55
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.9e-28 Score=292.15 Aligned_cols=120 Identities=23% Similarity=0.259 Sum_probs=103.7
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHH
Q 001757 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1017)
Q Consensus 173 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f 252 (1017)
.+++++|..+.|||||.|||||+++.++.|+++|+.|+.||+|.++.|+|++|.++...++...
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~---------------- 172 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLE---------------- 172 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHH----------------
Confidence 3468999999999999999999999999999999999999999999999999999877765421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEE-Ec
Q 001757 253 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIY-RD 311 (1017)
Q Consensus 253 ~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIY-r~ 311 (1017)
....++++.+.+.+++++++||+.+| ..+.+.+..+...+.+++.+|.++|++| +.
T Consensus 173 -~~~~~~~~~~~~~~~~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~ 229 (507)
T PRK01611 173 -LLWRKAVDISLDEIKEDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVES 229 (507)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEee
Confidence 02457788999999999999999998 3345566666778999999999999999 44
No 56
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=4.8e-28 Score=281.41 Aligned_cols=351 Identities=16% Similarity=0.181 Sum_probs=244.9
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeee---------eccc-CccChhHHHHHHHHHHHHhcCCccccChHH
Q 001757 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALW---------VPGM-DHAGIATQVVVEKKLMRERKLTRHDIGREQ 251 (1017)
Q Consensus 182 pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~---------~pG~-D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~ 251 (1017)
-=|+|-..+||||+++++..|++.||.|++||+|.| +.|. |+||-+|...++ +.|+++
T Consensus 27 CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~-----~~g~~~------- 94 (481)
T PRK14534 27 CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAAR-----ERGLTV------- 94 (481)
T ss_pred CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHH-----HcCCCH-------
Confidence 347888999999999999999999999999999999 7898 777778766654 357765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCCCccccccccc
Q 001757 252 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 331 (1017)
Q Consensus 252 f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~~TaLsd~EVe 331 (1017)
+++++.|.+.+.+.+++||+..| ..+.| .++|...+++++.+|.++|++|.....|+||+.+-
T Consensus 95 -----~e~a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~--------- 157 (481)
T PRK14534 95 -----YEISRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF--------- 157 (481)
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc---------
Confidence 47789999999999999999988 44444 57999999999999999999999999999998641
Q ss_pred cccCCCceeEeccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeeecCCCCCcc
Q 001757 332 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 411 (1017)
Q Consensus 332 ~~~~~~~t~~~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~~P~~~~~i 411 (1017)
|+ |..|.|...
T Consensus 158 ------------~~------------------------------------------------YG~ls~~~l--------- 168 (481)
T PRK14534 158 ------------KS------------------------------------------------YGQMAGINL--------- 168 (481)
T ss_pred ------------cc------------------------------------------------hhhhcCCCH---------
Confidence 11 112222110
Q ss_pred ceEecCccccCC--CCCCceecCC-CCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcC
Q 001757 412 PIICDAILVDPK--FGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKG 488 (1017)
Q Consensus 412 pIi~~~~~V~~~--~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~g 488 (1017)
-++. .|++ |...+ -++|.||.+++..
T Consensus 169 --------~~l~~~~~~~-v~~~~~K~np~DFaLWK~~------------------------------------------ 197 (481)
T PRK14534 169 --------NDFKDMSVSR-VEIDKSKRNKSDFVLWFTN------------------------------------------ 197 (481)
T ss_pred --------HHHhhhccCc-CCcccCCCCcccchhcCcC------------------------------------------
Confidence 0000 0110 00000 2333444333210
Q ss_pred CccccccccccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeec
Q 001757 489 LYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQL 568 (1017)
Q Consensus 489 l~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr 568 (1017)
..+++.++++.-
T Consensus 198 --------------------------------------------------------------------~~~~~~~~~w~s 209 (481)
T PRK14534 198 --------------------------------------------------------------------SKFKDQEMKWDS 209 (481)
T ss_pred --------------------------------------------------------------------CcCCCCCCeecC
Confidence 012334456677
Q ss_pred CCCCCcCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCCh
Q 001757 569 WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD 648 (1017)
Q Consensus 569 ~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~ 648 (1017)
.||.--|-|++++.- +-...+|
T Consensus 210 pWG~GrPgWHiECsa----------------------------------------------------m~~~~lg------ 231 (481)
T PRK14534 210 PWGFGYPSWHLECAA----------------------------------------------------MNLEYFK------ 231 (481)
T ss_pred CCCCcCCcHHHHHHH----------------------------------------------------HHHHHcC------
Confidence 899999999875430 0001111
Q ss_pred hhhhhCCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHH
Q 001757 649 DLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKR 728 (1017)
Q Consensus 649 d~~~~~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~ 728 (1017)
-..|++..|.|++|++.-..++++.+.+|+ ||-+.++|+-.+..+|+|||||+||+|...|+++
T Consensus 232 -----~~~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~---------- 295 (481)
T PRK14534 232 -----STLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLED---------- 295 (481)
T ss_pred -----CcceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHh----------
Confidence 124899999999999999999998888876 6666776654444899999999999999999997
Q ss_pred hhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001757 729 LEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEG 807 (1017)
Q Consensus 729 l~~~nl~~~e~~~a~~~~~~~~p~~i~~-~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~ 807 (1017)
+ ++++++||++++ +....+++|+.+.++..++-+++|++.++.+...+..
T Consensus 296 ---------------------------~~~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~- 346 (481)
T PRK14534 296 ---------------------------QGFSPLDFRYFCLT-AHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQ- 346 (481)
T ss_pred ---------------------------cCCChhHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 4 889999999875 6677899999999999998889999887754333311
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHH
Q 001757 808 FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1017)
Q Consensus 808 ~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1017)
.... .......+ .....+..+...+.++|+ .++...|+..|++++
T Consensus 347 ~~~~-~~~~~~~~----~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~ 392 (481)
T PRK14534 347 FDLN-LLNKDLEN----IEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDII 392 (481)
T ss_pred cccc-cccccccc----chhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 0000 00000000 000112344567778884 599999999999885
No 57
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.95 E-value=3.2e-27 Score=245.74 Aligned_cols=179 Identities=30% Similarity=0.449 Sum_probs=149.9
Q ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHh--hhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Q 001757 778 LDIQRVVGYRQ-WCNKLWNAVRFSMS--KLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTV 853 (1017)
Q Consensus 778 f~~~~v~~~r~-f~nkl~N~~rf~l~--~l~~~~~p~~~-~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i 853 (1017)
|+.+.+++.++ |||||||++||+++ ++.+ +.|... .....++..|+||+++++.++++++++|++|+|+.|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~-~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDG-FDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 57788998888 99999999999987 4432 444321 1223467899999999999999999999999999999999
Q ss_pred HHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecC
Q 001757 854 YSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCE 933 (1017)
Q Consensus 854 ~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~ 933 (1017)
+.|++ .++++|++.+|+++++++.. ..++.++.+|+.+++.+++||||||||+|||||++++...+ +..+||+.++
T Consensus 80 ~~f~~-~~~~~Y~e~~K~~~~~~~~~--~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~-~~~~si~~~~ 155 (183)
T cd07961 80 LEFID-ELTNWYIRRNRKRFWGEEGD--DDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELG-DAPESVHLLD 155 (183)
T ss_pred HHHHH-HhhhhHhhhchHHhcCCCCc--hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcC-CCCCceeeec
Confidence 99996 67799999999998865311 14667889999999999999999999999999999975211 1236899999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 001757 934 YPSAVEGWTDERAEFEMDLVESTVRCIR 961 (1017)
Q Consensus 934 ~P~~~~~~~~~~~e~~~~~v~~i~~~iR 961 (1017)
||++++.+.|+.++..++.++++++++|
T Consensus 156 wP~~~~~~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 156 WPEVDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHhhC
Confidence 9999888889999999999999999887
No 58
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.94 E-value=1.4e-26 Score=261.19 Aligned_cols=125 Identities=15% Similarity=0.188 Sum_probs=98.6
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCcc--------ChhHHHHHHHHHHHHhcCCcc
Q 001757 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA--------GIATQVVVEKKLMRERKLTRH 245 (1017)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~--------Glpiq~~vEk~l~~~~~~~~~ 245 (1017)
+++|+|++|++ |||.+||||++.++..|+++||+||+|++|.+++|+|+| |+|.+ +++. .|+...
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~----~G~pi~ 90 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQY----IGMPLS 90 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHh----cCccch
Confidence 45799999985 999999999999999999999999999999999999999 57654 4443 355544
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCCh-hhHHHHHHHHHHHhhCCcEEE
Q 001757 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDE-KRSKAVTEAFVRLYKEGLIYR 310 (1017)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~-~y~~~v~~~F~~L~ekGlIYr 310 (1017)
.++.. | ..|.+|++.+...+.+.|++||+++| .+.|++. ..-.....++..|.+.+.|.+
T Consensus 91 ~ip~p-~-g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~ 151 (353)
T cd00674 91 SVPDP-F-GCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMA 151 (353)
T ss_pred hchhh-c-CCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHH
Confidence 44322 2 33569999999999999999999999 3444443 333778888888988877753
No 59
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.93 E-value=3.7e-25 Score=229.67 Aligned_cols=178 Identities=25% Similarity=0.432 Sum_probs=149.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCC-CCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 001757 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL-HPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSW 856 (1017)
Q Consensus 778 f~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~-~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f 856 (1017)
++.+.+.+.+++++|+||++||+++++.+ +.|.... .....+..|+|++++++.+++++.++|++|+|+.|++.+++|
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f 79 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLND-FDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNF 79 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccC-CCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35677889999999999999999988754 5543211 123567899999999999999999999999999999999999
Q ss_pred HHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCC
Q 001757 857 WQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPS 936 (1017)
Q Consensus 857 ~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~ 936 (1017)
+++++||+|++.+|||++++... +..++.+..+|+.+++.+++||+|||||+|||||+.|+.. .+..||+.++||+
T Consensus 80 ~~~~l~n~Yi~~~k~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~---~~~~~v~~~~wP~ 155 (180)
T cd07960 80 CTVDLSAFYLDIIKDRLYCDAKD-SLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE---KKEESVFLEDWPE 155 (180)
T ss_pred HHHHHHHHHHHhcccceecCCCC-CHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc---CCCCCeeccCCCC
Confidence 98899999999999998854211 0145678889999999999999999999999999999752 1136899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHH
Q 001757 937 AVEGWTDERAEFEMDLVESTVRCI 960 (1017)
Q Consensus 937 ~~~~~~~~~~e~~~~~v~~i~~~i 960 (1017)
+++.+.|++++..|+.++++...+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 156 LPEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred CcccccCHHHHHHHHHHHHHHHhh
Confidence 998899999999999888876654
No 60
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.9e-24 Score=241.79 Aligned_cols=335 Identities=22% Similarity=0.350 Sum_probs=239.2
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHH
Q 001757 184 PNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEY 263 (1017)
Q Consensus 184 Py~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~ 263 (1017)
|+|-...|||||++++.-|++.||.+..||.|.|+.-+-.--=+ +-++. .+.|.+ ++++++.|
T Consensus 30 pTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDK----Ii~rA-~~~g~~------------~~ev~~~~ 92 (464)
T COG0215 30 PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDK----IINRA-REEGLS------------IREVAERY 92 (464)
T ss_pred CccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHH----HHHHH-HHhCCC------------HHHHHHHH
Confidence 88999999999999999999999999999999999887552222 22221 234543 46889999
Q ss_pred HHHHHHHHHHhccc-cccCCccccCChhhHHHHHHHHHHHhhCCcEEEc-ceeeeecCCCCccccccccccccCCCceeE
Q 001757 264 GGTILRQQRRLGAS-LDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRD-LRLVNWDCVLRTAISDIEVDYVDIPKREMR 341 (1017)
Q Consensus 264 ~~~i~~ql~rlG~s-~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~-~~~V~wcp~~~TaLsd~EVe~~~~~~~t~~ 341 (1017)
+..+.+++..||+. .| ..+..| +|...+.++..+|.++|+.|.. .--|+++...
T Consensus 93 i~~f~~D~~aL~v~~p~-~~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~-------------------- 148 (464)
T COG0215 93 IAAFFEDMDALNVLPPD-IEPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK-------------------- 148 (464)
T ss_pred HHHHHHHHHHhCCCCCc-ccCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEeccc--------------------
Confidence 99999999999994 45 234445 7888999999999999999998 4577777642
Q ss_pred eccCccccceeeeeeeEeeecCCCcceEEEeeccccccccCcEEEEcCCCcccccccCCeee-cCCCCCccceEecCccc
Q 001757 342 NVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAI-HPFNGRKIPIICDAILV 420 (1017)
Q Consensus 342 ~vp~y~~~~e~g~l~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry~~L~G~~~~-~P~~~~~ipIi~~~~~V 420 (1017)
+|. |..|.|..-. --..+..+. +
T Consensus 149 -f~~------------------------------------------------YG~LS~~~~le~l~~gar~~-------~ 172 (464)
T COG0215 149 -FKD------------------------------------------------YGKLSGRDSLEELQAGARVE-------V 172 (464)
T ss_pred -chh------------------------------------------------hHhhcCCCChhHHhhccccc-------c
Confidence 111 2222221000 000000000 1
Q ss_pred cCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccc
Q 001757 421 DPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRL 500 (1017)
Q Consensus 421 ~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~ 500 (1017)
+.+ -.+|.||.++|..
T Consensus 173 ~~~----------Krnp~DFvLWK~s------------------------------------------------------ 188 (464)
T COG0215 173 DEE----------KRNPLDFVLWKAA------------------------------------------------------ 188 (464)
T ss_pred ccc----------cCCchhheeeccC------------------------------------------------------
Confidence 111 3456666555421
Q ss_pred cccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeecCCCCCcCcceec
Q 001757 501 GLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVT 580 (1017)
Q Consensus 501 p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~ 580 (1017)
+.++..| .-.||.-=|-|+++
T Consensus 189 ------------------------------------k~gEp~W-----------------------~SPWG~GRPGWHIE 209 (464)
T COG0215 189 ------------------------------------KPGEPSW-----------------------DSPWGKGRPGWHIE 209 (464)
T ss_pred ------------------------------------CCCCCCC-----------------------CCCCCCCCCchhHH
Confidence 0011111 23688888999986
Q ss_pred cCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCccccccCCCcEEEEeccCccccccccCCCCChhhhhhCCccccc
Q 001757 581 LEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLE 660 (1017)
Q Consensus 581 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~ 660 (1017)
++ .|-...+| + ..|+|.
T Consensus 210 CS----------------------------------------------------aM~~~~LG-----~------~~DIHg 226 (464)
T COG0215 210 CS----------------------------------------------------AMSTKYLG-----E------TFDIHG 226 (464)
T ss_pred HH----------------------------------------------------HHHHHHhC-----C------Ccceec
Confidence 43 11122233 1 238999
Q ss_pred eeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCChHHHH
Q 001757 661 TGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELE 740 (1017)
Q Consensus 661 ~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~~e~~ 740 (1017)
.|.|++|.+.-.-++.+.+.+|..||-+.++|.-.+.-+|+|||||+||+|...|+++
T Consensus 227 GG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~---------------------- 284 (464)
T COG0215 227 GGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLK---------------------- 284 (464)
T ss_pred CcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHh----------------------
Confidence 9999999999999999999999889999999954445999999999999999999998
Q ss_pred HHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCC
Q 001757 741 VAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLP 820 (1017)
Q Consensus 741 ~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~ 820 (1017)
+|++.+|||+|++ +.....++|+.+.++.+++.+.+|+|+++.+.....+ .. ..
T Consensus 285 ---------------~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~-~~---------~~ 338 (464)
T COG0215 285 ---------------KYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGD-AE---------LA 338 (464)
T ss_pred ---------------hcCHHHHHHHHHH-HHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhccc-cc---------cc
Confidence 8999999999986 5667799999999999999999999999876533221 10 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHH
Q 001757 821 FSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWW 857 (1017)
Q Consensus 821 ~~Drwil~~L~~~i~~v~~a~-e~~~f~~a~~~i~~f~ 857 (1017)
.+......+.++| ++|++..|+..|+++.
T Consensus 339 --------~~~~~~~~f~~al~DDfnt~~al~~l~~l~ 368 (464)
T COG0215 339 --------DLKEFEARFREALDDDFNTPKALAVLFELA 368 (464)
T ss_pred --------hhHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 3445566677777 5599999999999985
No 61
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=2.9e-22 Score=238.00 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=79.7
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccC--------hhHHHHHHHHHHHHhcCCcc
Q 001757 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTRH 245 (1017)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~G--------lpiq~~vEk~l~~~~~~~~~ 245 (1017)
++.++|.+|+ +|||.+||||++..+..|+++|+.|++|++|.+++|+|.|| +|.+..+++.+ |+...
T Consensus 22 ~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~----G~pl~ 96 (510)
T PRK00750 22 KPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYL----GKPLT 96 (510)
T ss_pred CCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhc----Ccccc
Confidence 4458888888 59999999999999999999999999999999999999998 77654455443 54432
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 001757 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLD 279 (1017)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~D 279 (1017)
.+.. .|= .+..|++.+...+.+.|.++|+++|
T Consensus 97 ~~p~-p~G-~~~~~~~~~~~~~~~~~~~~gi~~d 128 (510)
T PRK00750 97 EIPD-PFG-CHESYAEHFNAPLREFLDRFGIEYE 128 (510)
T ss_pred cCCC-CCC-CchHHHHHHHHHHHHHHHHcCCceE
Confidence 2211 111 1578999999999999999999998
No 62
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.89 E-value=1.2e-22 Score=204.69 Aligned_cols=147 Identities=33% Similarity=0.585 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 001757 823 CKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLL 902 (1017)
Q Consensus 823 Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL 902 (1017)
|+||+++++.+++.++++|++|+|+.|++.+++|+++++||+|++.+||++++++... .|+ ++.+|+.+++.+++||
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~--~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDE--SRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCH--HHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchh--HHH-HHHHHHHHHHHHhhcc
Confidence 8999999999999999999999999999999999889999999999999998764431 355 8999999999999999
Q ss_pred hchhhHHHHHHHHhCCCCCCCCCCCCeeecCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCcce
Q 001757 903 HPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERA-EFEMDLVESTVRCIRSLRAEVLGKQKNERLP 977 (1017)
Q Consensus 903 ~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~~~-e~~~~~v~~i~~~iRslr~~~~~k~i~~~~~ 977 (1017)
+|||||+||||||+|+... ....+||+.+.||. .....++.. +..++.+.+++..+|++|+.. +++...+
T Consensus 78 ~P~~P~~aEeiw~~l~~~~-~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~~---~i~~~~~ 148 (153)
T PF08264_consen 78 SPFMPFIAEEIWQRLKSEK-LGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKEK---NIKPKEP 148 (153)
T ss_dssp TTTSHHHHHHHHHHCTTHH-TTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHCC---EESTTCG
T ss_pred CCCCcHHHHHHHHHhhhcc-CCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCC
Confidence 9999999999999884211 13458999999998 544335556 789999999999999999987 7644433
No 63
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.87 E-value=2.8e-22 Score=206.73 Aligned_cols=127 Identities=39% Similarity=0.626 Sum_probs=97.2
Q ss_pred eeEeeecCCCcceEEEeeccccccccCcEEEEcCCCccc---------------------------------ccccCCee
Q 001757 356 TSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARY---------------------------------SHLHGKFA 402 (1017)
Q Consensus 356 ~~~~~~l~~~~~~i~v~TTrPeTl~g~tavaV~P~d~ry---------------------------------~~L~G~~~ 402 (1017)
..+.|++.+++..|.|+||||+||+|.+.||++|+++.- .-+.|.++
T Consensus 10 ~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~~a 89 (185)
T PF13603_consen 10 AEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGLYA 89 (185)
T ss_dssp EEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEEEE
T ss_pred EEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCCEE
Confidence 346778888888999999999999999999999998621 01468899
Q ss_pred ecCCCCCccceEecCccccCCCCCCceecCCCCCcchHHHHHHhCCceeeeeCC----------------CCccccCCCC
Q 001757 403 IHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD----------------DGKINSNGGL 466 (1017)
Q Consensus 403 ~~P~~~~~ipIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~----------------~G~~~e~~g~ 466 (1017)
.||++++++||+.++| |.+++||||||.+||||++||++|++||||+..||.. +|.+. |+|
T Consensus 90 ihP~t~~~iPI~va~y-Vl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~- 166 (185)
T PF13603_consen 90 IHPLTGKKIPIYVANY-VLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSG- 166 (185)
T ss_dssp E-TTTS-EEEEEEETT-S-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSG-
T ss_pred ECCCCCCCccEEEECc-eeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCC-
Confidence 9999999999999996 9999999999999999999999999999999887753 36666 778
Q ss_pred CCCCCChhhHHHHHHHHHH
Q 001757 467 EFEGMPRFKAREAVNEALK 485 (1017)
Q Consensus 467 ~f~G~~~~~ar~~Vi~~L~ 485 (1017)
+|.||+..+|+++|++.|+
T Consensus 167 ~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 167 EFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GGTTSBHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999984
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.87 E-value=9.5e-20 Score=220.17 Aligned_cols=221 Identities=18% Similarity=0.127 Sum_probs=137.4
Q ss_pred eeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCC-ChHHH
Q 001757 661 TGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL-DPKEL 739 (1017)
Q Consensus 661 ~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl-~~~e~ 739 (1017)
.|.|| .++|.++.....++.-..| +++.+|++.+ .+|.|||||+||+|+|.|+++... +.....+...+. +.+++
T Consensus 334 ~g~~q-~~h~~~v~~~l~~lG~~~~-~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~-~ra~~~i~~~~~~~~~~~ 409 (566)
T TIGR00456 334 WGSDH-HLHIAQFFAILEKLGFYKK-KELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEAS-KRAGNVITIKNDLEEEDV 409 (566)
T ss_pred ecCcH-HHHHHHHHHHHHHcCCCCC-CceEEEEEEE-EECCCCCccCCceeeHHHHHHHHH-HHHHHHHHhcCCccHHHH
Confidence 36664 3667776655444432334 7888888876 567899999999999999987311 001111111111 11122
Q ss_pred HHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHH-HHHHHHHHHHHHHHhhhCC---CCCCCCCCC
Q 001757 740 EVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR-QWCNKLWNAVRFSMSKLGE---GFVPPLKLH 815 (1017)
Q Consensus 740 ~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r-~f~nkl~N~~rf~l~~l~~---~~~p~~~~~ 815 (1017)
+..+|+|++||++++.. ...|++||++.+.... +..+.+-|+..++.+.+.. +..+....+
T Consensus 410 --------------~~~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~ 474 (566)
T TIGR00456 410 --------------ADAVGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADD 474 (566)
T ss_pred --------------HHHhcccceeeHHhhcC-CCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccc
Confidence 23899999999999877 5789999998754321 2233344444333222211 101111111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHH
Q 001757 816 PHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCL 895 (1017)
Q Consensus 816 ~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l 895 (1017)
.......++-++..+..+...+.+++++++++.+++.++++ ...+|.|++.+ +.+..++++....|.........+|
T Consensus 475 ~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~L--a~~~N~yy~~~-~Vl~~~~~~~~~~RL~L~~a~~~vl 551 (566)
T TIGR00456 475 FSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYEL--ASLFSSFYKAC-PVLDAENENLAAARLALLKATRQTL 551 (566)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH--HHHHHHHHhcC-ccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11235567889999999999999999999999999999998 47778888866 4454333321224555555566667
Q ss_pred HHHHHHhh
Q 001757 896 ETGLRLLH 903 (1017)
Q Consensus 896 ~~~l~LL~ 903 (1017)
..++.||.
T Consensus 552 ~~gL~lLG 559 (566)
T TIGR00456 552 KNGLQLLG 559 (566)
T ss_pred HHHHHhcC
Confidence 77777774
No 65
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.86 E-value=2.9e-21 Score=211.00 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=90.1
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHH
Q 001757 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1017)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~ 255 (1017)
+.++|- |+|-..+|||||++++..|++.||.+..||+|.++.+.-.-.=.| -++. ++.|++.
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKi----i~~A-~~~g~~~----------- 71 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKI----IKRA-REEGVSP----------- 71 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHH----HHHH-HHTTS-H-----------
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHH----HHHH-HhccCCH-----------
Confidence 445444 788899999999999999999999999999999999987654333 2222 2456553
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc-eeeeecCC
Q 001757 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL-RLVNWDCV 320 (1017)
Q Consensus 256 ~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~-~~V~wcp~ 320 (1017)
++.+..|.+.+.++|++||+.-...-+..| ++...+.+...+|.++|+.|... .-|+++..
T Consensus 72 -~ela~~y~~~f~~dm~~Lnv~~p~~~prat---e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 72 -QELARRYEEEFFEDMKALNVLPPDHYPRAT---EHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp -HHHHHHHHHHHHHHHHHTT----SEEEEGG---GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCCccccchh---ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 477888999999999999998763333344 79999999999999999999998 88877764
No 66
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=6.1e-19 Score=198.35 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=139.1
Q ss_pred ccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCC
Q 001757 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 735 (1017)
Q Consensus 656 ~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~ 735 (1017)
.|+|-.|.|+-|.+.-.-++.+.+.....++-+.++|.--+..+|+||||||+|+|+..++++
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk----------------- 321 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALK----------------- 321 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHH-----------------
Confidence 478999999999999999999999988888999999944445999999999999999999998
Q ss_pred hHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCC
Q 001757 736 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLH 815 (1017)
Q Consensus 736 ~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~ 815 (1017)
.|.+++||++++. ......++|+.+.++...++.+.+.|++.-+...... -.|
T Consensus 322 --------------------~~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~-~~~----- 374 (586)
T KOG2007|consen 322 --------------------KYSPRQLRLAFLL-HQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRG-AKP----- 374 (586)
T ss_pred --------------------hcCHHHHHHHHHH-HHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-----
Confidence 8999999999875 5566799999998888887777777766433322211 111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHhhHhHHHHHhhc
Q 001757 816 PHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIEAIK 870 (1017)
Q Consensus 816 ~~~~~~~Drwil~~L~~~i~~v~~a~-e~~~f~~a~~~i~~f~~~~l~~~Yle~~K 870 (1017)
.+.++..+.-++.++..+..++..++ ++++-..++..+.++ ...+|.||....
T Consensus 375 ~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~l--vs~~N~~i~~~~ 428 (586)
T KOG2007|consen 375 FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIREL--VSQGNAYIRESG 428 (586)
T ss_pred hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHH--HhhhhHHHHHhc
Confidence 33667788889999999999998888 789999999999998 578999998776
No 67
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.9e-15 Score=180.57 Aligned_cols=216 Identities=20% Similarity=0.227 Sum_probs=130.1
Q ss_pred ceeecccchHHHHHHHHHhhhcCCCCceEEEEc---ceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCCCCh
Q 001757 660 ETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH---PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDP 736 (1017)
Q Consensus 660 ~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~H---g~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~nl~~ 736 (1017)
+.|.||. +++.++...... .|..|-+.+++| |++++.+|.||||..||+|...|+++-. +...+
T Consensus 340 V~gadq~-~~~~ql~~~l~~-~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~-----------~era~ 406 (577)
T COG0018 340 VLGADQH-GHFKQLKAVLEL-LGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEA-----------GERAP 406 (577)
T ss_pred EeCCcch-hHHHHHHHHHHH-hcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHH-----------HHHhh
Confidence 3366643 566666543222 233343456655 7888899999999999999999998722 11111
Q ss_pred HHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH------------HHHHHHHHHHHHHHHHhhh
Q 001757 737 KELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSKL 804 (1017)
Q Consensus 737 ~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~------------~r~f~nkl~N~~rf~l~~l 804 (1017)
.+++.. .+.+ -+.....|.||+||++++.+. ..++.||++.+.. +.+.|.-+.++- ..
T Consensus 407 ~~~~~~---~~~~-~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~----e~- 476 (577)
T COG0018 407 EEMEEK---EEKN-EEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAG----ED- 476 (577)
T ss_pred hHhhhh---hhhh-HHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcc----cc-
Confidence 111111 0000 112236899999999998665 4599999987643 222322222211 10
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHH
Q 001757 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASER 884 (1017)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r 884 (1017)
...+. ...........++-++.+|..+..-+.++.++++.+..+..++++. ..|+++|=. + +.+..++++....|
T Consensus 477 ~~~~~--~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~-~-~Vl~~~~~~~~~aR 551 (577)
T COG0018 477 ELDLS--TEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNA-C-PVLGAENEELRAAR 551 (577)
T ss_pred ccccc--cccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhh-C-CcCCCCcHHHHHHH
Confidence 00010 0000011223367799999999999999999999999999999986 889999833 2 33433333222245
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 001757 885 SAAQHVLWVCLETGLRLLH 903 (1017)
Q Consensus 885 ~~a~~~L~~~l~~~l~LL~ 903 (1017)
.........+|..++.||-
T Consensus 552 L~L~~a~~~vL~ngL~LLG 570 (577)
T COG0018 552 LALVKATRQVLKNGLDLLG 570 (577)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 5555566667777777774
No 68
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.74 E-value=4.1e-17 Score=192.90 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=75.4
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCcc--------ChhHHHHHHHHHHHHhcCCccc
Q 001757 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA--------GIATQVVVEKKLMRERKLTRHD 246 (1017)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~--------Glpiq~~vEk~l~~~~~~~~~~ 246 (1017)
.+++|.+|.+ |||.+||||++..+..|+++|+.|++|++|.+++|+|+| ++| +. .++.+ |+....
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-~~-~~~yl----G~Pl~~ 90 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-EE-LETYL----GMPLTR 90 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-HH-HHHhC----CCccee
Confidence 4699999999 999999999999999999999999999999999999999 555 11 33332 332211
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001757 247 IGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1017)
Q Consensus 247 ~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW 280 (1017)
++ +-| ..+..|++.|...+.+.|.+||+.+++
T Consensus 91 vp-dp~-g~~~s~~~h~~~~~~~~l~~~gi~~e~ 122 (515)
T TIGR00467 91 IP-DPE-GCKTSYAEHFLIPFLESLPVLGINPEF 122 (515)
T ss_pred cC-CCC-CCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 11 111 114689999999999999999998773
No 69
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.69 E-value=4.9e-14 Score=170.25 Aligned_cols=210 Identities=23% Similarity=0.201 Sum_probs=127.5
Q ss_pred ceeecccchHHHHHHHHHhhhcCCCC--ceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcCC--CC
Q 001757 660 ETGHDILFFWVARMVMLGIKLGGEVP--FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN--LD 735 (1017)
Q Consensus 660 ~~G~Dil~fW~a~~~~~~~~l~~~~P--fk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~n--l~ 735 (1017)
+.|.|| .++|.++....-.+ |..+ --.++.+|+|. .+|+||||..||+|...|+++.. .+.....+.+-+ ++
T Consensus 330 V~g~dq-~~h~~~l~~~~~~l-g~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea-~~~a~~~~~~~~~~l~ 405 (562)
T PRK12451 330 VVGPEQ-SLHFNQFFTVLKKL-GYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEA-IELAKQNIEEKNPNLK 405 (562)
T ss_pred EeCCcH-HHHHHHHHHHHHHc-CCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHH-HHHHHHHHHhhccccc
Confidence 336664 35666665544433 4222 12457788997 68899999999999999999831 111112222222 22
Q ss_pred hHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH------------HHHHHHHHHHHHHHHHhh
Q 001757 736 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSK 803 (1017)
Q Consensus 736 ~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~------------~r~f~nkl~N~~rf~l~~ 803 (1017)
+.|. .|. ..|.||+||++++... ..++.||++.+.. +.+.|.-+..+
T Consensus 406 ~~~~-~a~------------~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka------- 464 (562)
T PRK12451 406 QKEE-VAK------------QVGVGAVIFHDLKNER-MHNIEFSLENMLKFEGETGPYVQYTHARACSILRKE------- 464 (562)
T ss_pred cHHH-HHH------------HhccceeeeHHhhcCC-CCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhc-------
Confidence 2111 111 6799999999998655 5699999988432 22333333332
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHH
Q 001757 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASE 883 (1017)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~ 883 (1017)
+..+.. ....-..+.++-++..+..+...+.+++++++++.+++.+++++ ...|.|++.+ +.+. + ++....
T Consensus 465 -~~~~~~---~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA--~~fN~fy~~~-~Vl~-~-~~~~~~ 535 (562)
T PRK12451 465 -SVEFET---CTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA--QSFNKYYGNV-RILE-E-SAEKDS 535 (562)
T ss_pred -CCCccc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhC-CCCC-C-HHHHHH
Confidence 101110 11111245667789999999999999999999999999999984 5666777654 3342 2 221124
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 001757 884 RSAAQHVLWVCLETGLRLLH 903 (1017)
Q Consensus 884 r~~a~~~L~~~l~~~l~LL~ 903 (1017)
|.........+|..++.||.
T Consensus 536 RL~L~~a~~~vL~~gL~LLG 555 (562)
T PRK12451 536 RLALVYAVTVVLKEGLRLLG 555 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 44444555666777777763
No 70
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.69 E-value=4.7e-16 Score=154.01 Aligned_cols=135 Identities=47% Similarity=0.895 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 001757 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 857 (1017)
Q Consensus 778 f~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~ 857 (1017)
||.+.+.+.++|++|+||+++|+.++... +.+... +.......|+|+++.++.+++++.++|++|+|++|++.+++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLED-DDEPEE-DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccc-cCcccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 57788999999999999999998653221 222110 1123456799999999999999999999999999999999997
Q ss_pred HhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhC
Q 001757 858 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1017)
Q Consensus 858 ~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L 917 (1017)
..+++|+|++..+||....+.. .......++..++..+++||+|||||+||+||+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~~~~~---~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYGEDEE---EKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcCCChH---HHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 5569999999999995543222 34556778889999999999999999999999875
No 71
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.64 E-value=1.4e-15 Score=162.17 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=105.8
Q ss_pred EEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHH
Q 001757 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1017)
Q Consensus 177 f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~ 256 (1017)
.+|=-.+|||||.|||||+++.++.|+++||.|+.|++|.+..|+|++|.+++..++... .+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~------------------~~ 63 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE------------------KW 63 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH------------------HH
Confidence 456668999999999999999999999999999999999999999999999988775431 16
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcceeeeecCCC
Q 001757 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVL 321 (1017)
Q Consensus 257 ~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~V~wcp~~ 321 (1017)
+++++.+.+.+.+.+++||+++| ....|.+. ...+..++.+|.++|++|+..--+..|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVRFD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 78899999999999999999998 33345543 788999999999999999998777777643
No 72
>PLN02286 arginine-tRNA ligase
Probab=99.63 E-value=1e-12 Score=159.13 Aligned_cols=215 Identities=10% Similarity=0.085 Sum_probs=132.7
Q ss_pred eeecccchHHHHHHHHHhhhcCCC-C----ceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHhhcC---
Q 001757 661 TGHDILFFWVARMVMLGIKLGGEV-P----FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG--- 732 (1017)
Q Consensus 661 ~G~Dil~fW~a~~~~~~~~l~~~~-P----fk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l~~~--- 732 (1017)
.|.|| .++|.++....-.+ |.. + --.++.+|||+..+|+||||..||+|...|+++.. .+.....+.+.
T Consensus 334 vg~~q-~~hf~~v~~~l~~l-G~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea-~~~a~~~~~~~~~~ 410 (576)
T PLN02286 334 TDVGQ-QQHFDMVFKAAKRA-GWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEA-KSRSKAALIERGKD 410 (576)
T ss_pred EeCcH-HHHHHHHHHHHHHc-CCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHH-HHHHHHHHHhccCc
Confidence 35554 35666665444333 322 2 13568899998788999999999999999999831 11111112211
Q ss_pred -CCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH------------HHHHHHHHHHHHHH
Q 001757 733 -NLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRF 799 (1017)
Q Consensus 733 -nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~------------~r~f~nkl~N~~rf 799 (1017)
.+++.+..... ...|.||+||++++.+. ..++.||++.+.. +.+.|.-+.++-
T Consensus 411 ~~~~~~~~~~~a-----------~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~-- 476 (576)
T PLN02286 411 SEWTPEELEQAA-----------EAVGYGAVKYADLKNNR-LTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSG-- 476 (576)
T ss_pred cccchhhHHHHH-----------HHhhhhhhhhhhhhcCC-CCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhcc--
Confidence 23333322111 16899999999987655 5699999988532 223333332210
Q ss_pred HHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcc
Q 001757 800 SMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPA 879 (1017)
Q Consensus 800 ~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~ 879 (1017)
... ..+... ....-....++-++..|..+...+.++.++++.+..+..++++. ..|+.+|=+ + +.+..++..
T Consensus 477 --~~~-~~~~~~--~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~~-~-~Vl~~~~~~ 548 (576)
T PLN02286 477 --KDI-DELKKT--GKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYSN-C-KVNGSEEET 548 (576)
T ss_pred --Ccc-cccccc--ccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhc-C-ccCCCCchh
Confidence 000 001000 01112245677889999999999999999999999999999986 888888843 2 444322222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 001757 880 FASERSAAQHVLWVCLETGLRLLH 903 (1017)
Q Consensus 880 ~~~~r~~a~~~L~~~l~~~l~LL~ 903 (1017)
.|.........+|..++.||-
T Consensus 549 ---aRL~L~~a~~~vL~~gL~LLG 569 (576)
T PLN02286 549 ---SRLLLCEATAIVMRKCFHLLG 569 (576)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcC
Confidence 566666666777788888774
No 73
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.62 E-value=5.1e-15 Score=142.16 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=96.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHH
Q 001757 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTV-YSW 856 (1017)
Q Consensus 778 f~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i-~~f 856 (1017)
|+.+.+.++.+|++++|+.+....+. ..|. ..++..|+|++++++.+++++.++|++|+|+.|++.+ +.|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~----~~~~-----~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~ 71 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIET----EGEL-----EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYEL 71 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc----cCCc-----cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56678899999999999988753211 1221 2346789999999999999999999999999999997 777
Q ss_pred HHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhC
Q 001757 857 WQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1017)
Q Consensus 857 ~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L 917 (1017)
+ ++||+|++..+|+ .++.+++.+++.+++||+|||||+|||||+.|
T Consensus 72 ~--~~~~~Y~~~~~~~-------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 72 Q--NDLDWYRERGGAG-------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H--HHHHHHHHHhCcc-------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 3 5899999998886 12458999999999999999999999999975
No 74
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.55 E-value=4.1e-14 Score=135.54 Aligned_cols=117 Identities=25% Similarity=0.345 Sum_probs=94.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 001757 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 857 (1017)
Q Consensus 778 f~~~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~ 857 (1017)
||.+.+.++++|+|++||++++..+.. .|.. ........|+|++++++.+++++.++|++|+|++|++.+++|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~----~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 74 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL----AAPA--AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV 74 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc----cccc--cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 577889999999999999987643221 1210 0123456799999999999999999999999999999999996
Q ss_pred HhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhC
Q 001757 858 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1017)
Q Consensus 858 ~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L 917 (1017)
..+|.|++..+| .+.++..+++.+++||+|||||+||+||+.|
T Consensus 75 --~~~n~~~~~~~p---------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 75 --NALYKYKKKDAQ---------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred --HHHHHhhccccc---------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 457888654322 3568899999999999999999999999875
No 75
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.51 E-value=1e-13 Score=135.18 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=81.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHH
Q 001757 819 LPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETG 898 (1017)
Q Consensus 819 ~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~ 898 (1017)
....|+|++++++++++++.++|++|+|+.|++.+++|+ ++||+|++..|||...+++. ....+.+..++..++..+
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~-~~~~~~~l~~~~~~l~~~ 110 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEED-PERLATVLYVLLELLRIL 110 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCC-HHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999995 79999999999996543211 013344556777778899
Q ss_pred HHHhhchhhHHHHHHHHhC
Q 001757 899 LRLLHPFMPFVTEELWQRL 917 (1017)
Q Consensus 899 l~LL~PfmPfitEelwq~L 917 (1017)
++||+|||||+|||||+.|
T Consensus 111 ~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 111 AILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHHhcCCCChHHHHHHHhC
Confidence 9999999999999999975
No 76
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.29 E-value=2.7e-11 Score=138.90 Aligned_cols=138 Identities=23% Similarity=0.279 Sum_probs=88.8
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHH---HHHHH---------
Q 001757 172 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEK---KLMRE--------- 239 (1017)
Q Consensus 172 ~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk---~l~~~--------- 239 (1017)
...++.+|-..-|||||+|||||+++.+|.|+|+|-.+..||+|.-..=....|..+-..+.. ....+
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 345678888899999999999999999999999999999999999999888899876433211 10000
Q ss_pred -------------hcCC----ccccC---hHHHHH-------HHHHHHHHHHHHHHHHHHHhccccc-cCCccccCChhh
Q 001757 240 -------------RKLT----RHDIG---REQFVS-------EVWKWKDEYGGTILRQQRRLGASLD-WSRECFTMDEKR 291 (1017)
Q Consensus 240 -------------~~~~----~~~~g---~e~f~~-------~~~~~~~~~~~~i~~ql~rlG~s~D-W~r~~~T~d~~y 291 (1017)
.... ..++. ++.|.+ ....|.....+.++++|.++|+.+| |..+ .+-.|
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E---~Es~~ 173 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDE---SESFY 173 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEH---CHHHH
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc---chhhh
Confidence 0000 00000 011111 0123444467788999999999999 4333 33356
Q ss_pred HHHHHHHHHHHhhCCcEEEcc
Q 001757 292 SKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 292 ~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
...+..++.+|.++|++|+..
T Consensus 174 ~~~v~~vl~~L~e~g~~~~~d 194 (354)
T PF00750_consen 174 SGKVDEVLERLKEKGLLYESD 194 (354)
T ss_dssp TTHHHHHHHHHHCTTTEEEET
T ss_pred hhHHHHHHHHHHhCCcEEecC
Confidence 677899999999999999754
No 77
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.26 E-value=6.6e-11 Score=112.64 Aligned_cols=116 Identities=23% Similarity=0.373 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 001757 781 QRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQ 860 (1017)
Q Consensus 781 ~~v~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~ 860 (1017)
+.+.+.++|+|++||+++|+.....+ ..|... .......|+|++++++.+++.+.++|++|+|+.|++.+++|+ ..
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~-~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~-~~ 77 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGG-TQPKWD--NELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFT-NE 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcC--hhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-Hh
Confidence 46788899999999999997655432 222110 012346799999999999999999999999999999999996 44
Q ss_pred HhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 001757 861 FCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFM 906 (1017)
Q Consensus 861 l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~Pfm 906 (1017)
+ |+|++..|||.+.+. ....+..+++.++..++++|+|||
T Consensus 78 ~-n~y~~~~~pw~~~~~-----~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 78 L-NWYLDELKPALQTEE-----LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred c-cHHHHHhhHHHcCch-----hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4 999999999977541 344567789999999999999997
No 78
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.08 E-value=2.4e-10 Score=114.46 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=65.6
Q ss_pred EECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHH
Q 001757 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1017)
Q Consensus 179 i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~ 258 (1017)
|+.+.|||||.|||||+++.++.|+++||+|++|++|.++.|+|.+|.++...+.+ .+.+ +++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~-----~~~~------------~~~ 63 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK-----KGEN------------AKA 63 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHh-----cCCC------------HHH
Confidence 35678999999999999999999999999999999999999999999998766643 2333 347
Q ss_pred HHHHHHHHHHHHHH
Q 001757 259 WKDEYGGTILRQQR 272 (1017)
Q Consensus 259 ~~~~~~~~i~~ql~ 272 (1017)
|++.+.+.++++++
T Consensus 64 ~~~~~~~~~~~~~~ 77 (143)
T cd00802 64 FVERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888887
No 79
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.55 E-value=5.3e-08 Score=109.97 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=62.2
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccC--------hhHHHHHHHHHHHHhcCCc
Q 001757 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTR 244 (1017)
Q Consensus 173 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~G--------lpiq~~vEk~l~~~~~~~~ 244 (1017)
++..+++-+| =.|+|.+|||+.+-.+..|++.|-.|.+|.+|-++..||..- +|-+ ..++.+ |+..
T Consensus 21 ~~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~yl----g~Pl 94 (360)
T PF01921_consen 21 GKEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKYL----GKPL 94 (360)
T ss_dssp --SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCCT----TSBT
T ss_pred CCccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHhc----CCcc
Confidence 3567777777 578999999999999999999999999999999999999853 3322 122211 2221
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001757 245 HDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1017)
Q Consensus 245 ~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW 280 (1017)
..++ +=| ..+..|++.|...+.+.|..||+-+++
T Consensus 95 t~VP-dP~-G~~~SyaeH~~~~~~~~L~~~gie~e~ 128 (360)
T PF01921_consen 95 TRVP-DPF-GCHESYAEHFNAPFEEFLDEFGIEYEF 128 (360)
T ss_dssp TTSB--TT-SSSSCHHHHHHHHHHHHHHTTT---EE
T ss_pred ccCC-CCC-CCCccHHHHHHHHHHHHHHHcCCceEE
Confidence 1111 111 124578999999999999999997764
No 80
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2.3e-06 Score=99.46 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=74.9
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccC--------hhHHHHHHHHHHHHhcCCccc
Q 001757 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTRHD 246 (1017)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~G--------lpiq~~vEk~l~~~~~~~~~~ 246 (1017)
..+++-+| =.|+|.+|||.++-.+..|++.|-.|-+|+.|.+++=||..- +|-+...|+.+ |+....
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Yl----g~Plt~ 93 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYL----GMPLTE 93 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHc----CCcccc
Confidence 46777776 579999999999999999999999999999999999998864 35444555544 443333
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 001757 247 IGREQFVSEVWKWKDEYGGTILRQQRRLGASLD 279 (1017)
Q Consensus 247 ~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~D 279 (1017)
++- -| -.|..|++.+...+.+-|.++|+-+.
T Consensus 94 IPd-P~-G~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 94 IPD-PF-GCCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred CCC-Cc-cccchHHHHHHHHHHHHHHhcCCceE
Confidence 221 01 13678899999999999999997765
No 81
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.07 E-value=7.7e-06 Score=88.48 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=66.1
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHH
Q 001757 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1017)
Q Consensus 182 pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~ 261 (1017)
=+|.|||.||||||++.++.++++| ++++.|+-=+|..--+. . ....
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r----------------~------------~~~~ 52 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT----------------K------------RPDP 52 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc----------------c------------cchH
Confidence 3799999999999999999999999 45555555554432110 0 0123
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEE
Q 001757 262 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1017)
Q Consensus 262 ~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr 310 (1017)
.+.+.|.++|+.||+ +|+..++.+ ++.+...++..+|.++|++|.
T Consensus 53 ~~~~~i~~dL~wLGl--~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 53 EAYDMIPEDLEWLGV--KWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHHcCC--CCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 334568999999998 777665544 455666777899999999997
No 82
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.87 E-value=3.1e-05 Score=93.10 Aligned_cols=94 Identities=26% Similarity=0.310 Sum_probs=68.9
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHH
Q 001757 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1017)
Q Consensus 182 pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~ 261 (1017)
=||+|||.||||||++.++.+.++| ...|.-++..=-+|.- +.+ ...
T Consensus 106 FaPsPtG~LHIGharaalln~~~Ar--~~~G~~iLRidDTDpk-----------------~~R--------------~~~ 152 (567)
T PRK04156 106 FAPNPSGPLHLGHARAAILNDEYAK--MYGGKFILRFEDTDPR-----------------TKR--------------PDP 152 (567)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEeEccCCCC-----------------ccc--------------chH
Confidence 4899999999999999999999999 3455555544444320 011 123
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 262 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 262 ~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
++.+.|.++|+.||+ +|+..++++ +|.....+...+|.++|++|...
T Consensus 153 e~~~~I~edL~wLGl--~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C~ 199 (567)
T PRK04156 153 EAYDMILEDLKWLGV--KWDEVVIQS--DRLEIYYEYARKLIEMGGAYVCT 199 (567)
T ss_pred HHHHHHHHHHHHcCC--CCCCccCcc--cCHHHHHHHHHHHHHcCCCccCC
Confidence 445789999999997 677766654 56677788889999999999653
No 83
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.57 E-value=0.00031 Score=84.62 Aligned_cols=96 Identities=24% Similarity=0.292 Sum_probs=71.2
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
+++==||.|||.||||||++.++.+.++| ...|.-++..==+|- + +.
T Consensus 94 vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G~~iLRidDTDp---~----------------R~------------ 140 (560)
T TIGR00463 94 VVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKGKLIIRFDDTDP---R----------------RV------------ 140 (560)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCEEEEEeCcCCc---c----------------cc------------
Confidence 55666899999999999999999999997 335555544433332 1 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
..+|.+.|.++|+.||+. |+..++++ +|.....+...+|.++|+.|...
T Consensus 141 --~~e~~~~I~edL~wLGi~--~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~C~ 189 (560)
T TIGR00463 141 --KPEAYDMILEDLDWLGVK--GDEVVYQS--DRIEEYYDYCRKLIEMGKAYVCD 189 (560)
T ss_pred --cHHHHHHHHHHHHHcCCC--CCcccccc--ccHHHHHHHHHHHHHcCCceeec
Confidence 234667899999999977 55655544 56777888999999999999764
No 84
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.56 E-value=0.00025 Score=84.47 Aligned_cols=96 Identities=25% Similarity=0.346 Sum_probs=72.7
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
+++==||.|||.||||||++.++...++|- ..|.-+|..==+|- .+
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLRiEDTDp-------------------~R------------- 57 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILRFDDTNP-------------------SK------------- 57 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCCC-------------------Cc-------------
Confidence 556668999999999999999999999985 35766665433332 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
-..+|.+.|.++|+-||+. |+..+++. +|-..-.+...+|.++|++|...
T Consensus 58 -~~~e~~~~I~~dL~WLGl~--wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C~ 107 (523)
T PLN03233 58 -EKAEFEESIIEDLGKIEIK--PDSVSFTS--DYFEPIRCYAIILIEEGLAYMDD 107 (523)
T ss_pred -cchHHHHHHHHHHHHhCCC--CCCCcccc--ccHHHHHHHHHHHHHcCCeEecC
Confidence 1245668999999999965 66766664 55667788899999999999764
No 85
>PLN02907 glutamate-tRNA ligase
Probab=97.50 E-value=0.00038 Score=86.76 Aligned_cols=94 Identities=28% Similarity=0.413 Sum_probs=71.6
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
+++==||.|||.||||||++.++...++| +..|.-+|..==+|- ++.
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTdp-------------------~r~------------ 260 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTNP-------------------SKE------------ 260 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC-------------------CcC------------
Confidence 66667999999999999999999999998 446766665433332 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEE
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr 310 (1017)
..+|.+.|.++|+-||+ +|+..++++ +|-..-.+...+|.++|+.|.
T Consensus 261 --~~e~~~~I~~dl~wLG~--~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 261 --SDEFVENILKDIETLGI--KYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred --ChHHHHHHHHHHHHcCC--CCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 24566899999999996 555776665 455667888999999999996
No 86
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.48 E-value=0.00033 Score=83.77 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=70.1
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
+++==||.|||.||||||++.++...++|.+ .|.-+|..==+|. ++
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRiEDTDp-------------------~r------------- 97 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRYDDTNP-------------------ET------------- 97 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCc-------------------cc-------------
Confidence 4455589999999999999999999999864 5666655444432 01
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
-..++.+.|.++|+-||+. |+..+++ ..|.....+...+|.++|++|...
T Consensus 98 -~~~e~~~~I~~dL~wLGi~--~D~~~~q--S~y~~~~ye~A~~Li~~G~AY~C~ 147 (574)
T PTZ00437 98 -EEQVYIDAIMEMVKWMGWK--PDWVTFS--SDYFDQLHEFAVQLIKDGKAYVDH 147 (574)
T ss_pred -cChHHHHHHHHHHHHcCCC--CCCCCcC--chhHHHHHHHHHHHHHcCCEEEcC
Confidence 1245667899999999965 5565544 455566667778999999999764
No 87
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.48 E-value=0.00033 Score=84.45 Aligned_cols=93 Identities=26% Similarity=0.424 Sum_probs=70.1
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
+++==||.|||.||||||++.++...++|-+ .|.-+|..==+|- ++
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRiEDTDp-------------------~R------------- 98 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRFDDTNP-------------------SK------------- 98 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEcCCCC-------------------cc-------------
Confidence 5566689999999999999999999999854 5665555433331 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHhhCCcEE
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIY 309 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r-~~~T~d~~y~~~v~~~F~~L~ekGlIY 309 (1017)
-..+|.+.|.++|+-||+ +|+. .+++. +|-..-.++..+|.++|+.|
T Consensus 99 -~~~e~~d~IleDL~WLGl--~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 99 -EKEHFEQAILDDLATLGV--SWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred -cCHHHHHHHHHHHHHCCC--CCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 124566899999999996 6765 56654 46677788899999999999
No 88
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.47 E-value=0.00029 Score=77.96 Aligned_cols=91 Identities=24% Similarity=0.337 Sum_probs=68.6
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHH
Q 001757 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1017)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~ 262 (1017)
+|.|||.||||||++.++...++| +..|.=+|.+==+|.. + -..+
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~-------------------R--------------~~~~ 50 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPP-------------------R--------------EVPG 50 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC-------------------C--------------CChH
Confidence 699999999999999999999999 4477777766555541 1 0234
Q ss_pred HHHHHHHHHHHhccccccCCc-cccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 263 YGGTILRQQRRLGASLDWSRE-CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 263 ~~~~i~~ql~rlG~s~DW~r~-~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
+.+.|.++|+-||+ +|+.. |+.. ++...-.++..+|.++|++|...
T Consensus 51 ~~~~I~~dL~wLGl--~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C~ 97 (272)
T TIGR03838 51 AADDILRTLEAYGL--HWDGEVVYQS--QRHALYQAALDRLLAAGLAYPCQ 97 (272)
T ss_pred HHHHHHHHHHHcCC--CCCCCeeeee--CCHHHHHHHHHHHHHcCCEEecC
Confidence 55789999999996 55543 4443 45566778889999999999764
No 89
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.43 E-value=0.00047 Score=78.23 Aligned_cols=92 Identities=30% Similarity=0.417 Sum_probs=63.5
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHH
Q 001757 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1017)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~ 262 (1017)
+|.|||.||||||++.++.-.++| +..|.=++.+==+|.. +. ..+
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~~-------------------R~--------------~~~ 51 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDPE-------------------RC--------------RPE 51 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSSTT-------------------TC--------------HHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEeccccccc-------------------cc--------------hhh
Confidence 699999999999999999999998 5567777665555531 11 234
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 263 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 263 ~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
+.+.|.++|+-||+..| ..+|+.. ++...-.++..+|.++|++|...
T Consensus 52 ~~~~i~~~L~wlGl~~D-~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~C~ 98 (314)
T PF00749_consen 52 FYDAILEDLRWLGLEWD-YGPYYQS--DRLEIYQEAAEKLIDKGKAYPCF 98 (314)
T ss_dssp HHHHHHHHHHHHT---S-TCEEEGG--GGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhheeEEEEecC-CeEEeHH--HHHHHHHHHHHHHhhcCCCcccc
Confidence 55789999999996555 2555543 45566777888999999999764
No 90
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.43 E-value=0.00047 Score=74.62 Aligned_cols=91 Identities=23% Similarity=0.269 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHH
Q 001757 181 LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK 260 (1017)
Q Consensus 181 ~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~ 260 (1017)
==+|.|||.||+||+++.++.-.++|-+ .|.-++.+==+|- +| -.
T Consensus 5 RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRieDtD~-------------------~R--------------~~ 49 (238)
T cd00807 5 RFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRFDDTNP-------------------EK--------------EE 49 (238)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------cc--------------cc
Confidence 3479999999999999999999998754 5655554333331 11 12
Q ss_pred HHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEE
Q 001757 261 DEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1017)
Q Consensus 261 ~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr 310 (1017)
.++.+.|.++|+-||+ +|+..++.. ++.+.-.++..+|.++|++|.
T Consensus 50 ~~~~~~I~~dL~wlGl--~wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 50 EEYVDSIKEDVKWLGI--KPYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred hHHHHHHHHHHHHcCC--CCCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 3456789999999996 555655543 455667888999999999998
No 91
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.28 E-value=0.00065 Score=81.14 Aligned_cols=93 Identities=26% Similarity=0.371 Sum_probs=66.4
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHH
Q 001757 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1017)
Q Consensus 182 pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~ 261 (1017)
=||.|||.||||||++.++...++|- ..|.-+|..==+|- .+. ..
T Consensus 5 FaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRieDTd~-------------------~r~--------------~~ 49 (522)
T TIGR00440 5 FPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFDDTNP-------------------VKE--------------DP 49 (522)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEcCCCc-------------------ccC--------------Ch
Confidence 48999999999999999999999984 45766665444442 111 24
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 262 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 262 ~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
++.+.|.++|+-||+..| +..+++.| |.....+.-.+|.++|+.|...
T Consensus 50 e~~~~I~~dL~wLG~~~d-~~~~~qS~--~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 50 EYVESIKRDVEWLGFKWE-GKIRYSSD--YFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred HHHHHHHHHHHHcCCCCC-CCceEccc--cHHHHHHHHHHHHHcCCEEeec
Confidence 566899999999996543 34455543 3344445668999999999764
No 92
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00078 Score=79.85 Aligned_cols=96 Identities=30% Similarity=0.366 Sum_probs=72.2
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
|++==+|.|||.||||||++.++...++|-+ .|.-++..==+|- .|.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiEDTD~-------------------~R~------------ 56 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIEDTDP-------------------ERE------------ 56 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------CCC------------
Confidence 6666689999999999999999999999865 5777766544442 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r-~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
..++.+.|.++|+-|| ++|+. .|+.+ ++-..-.+.-.+|.++|+.|...
T Consensus 57 --~~e~~~~I~~~L~WLG--l~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~c~ 106 (472)
T COG0008 57 --TPEAEDAILEDLEWLG--LDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYVCY 106 (472)
T ss_pred --CHHHHHHHHHHHHhcC--CCCCCceeehh--hhHHHHHHHHHHHHHCCCeEEec
Confidence 2345578999999999 56667 45554 45556677788999999999764
No 93
>PLN02859 glutamine-tRNA ligase
Probab=97.26 E-value=0.00082 Score=83.08 Aligned_cols=96 Identities=27% Similarity=0.296 Sum_probs=69.2
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
+++==||.|||.||||||++..+...++|.+ .|.-.|..==+|- ++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRieDTdp-------------------~r------------- 310 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFDDTNP-------------------EA------------- 310 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------Cc-------------
Confidence 5566689999999999999999999999974 5766655444332 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
-..+|.+.|.++|+-|| ++|+..+++.| |.....+.-.+|.++|+.|...
T Consensus 311 -~~~e~~~~I~edL~WLG--~~~d~~~~qSd--~f~~~Y~~A~~Li~~G~AY~C~ 360 (788)
T PLN02859 311 -EKKEYIDHIEEIVEWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYVDH 360 (788)
T ss_pred -cchHHHHHHHHHHHHcC--CCCCCcccccH--hHHHHHHHHHHHHHcCCeEecc
Confidence 12456689999999999 56777777654 2222333456799999999764
No 94
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.24 E-value=0.00093 Score=74.89 Aligned_cols=95 Identities=25% Similarity=0.328 Sum_probs=68.2
Q ss_pred EECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHH
Q 001757 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1017)
Q Consensus 179 i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~ 258 (1017)
++==+|.|||.|||||+++.++.-.++|-+ .|.=++.+==+|. +|.
T Consensus 7 ~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~-------------------~R~------------- 52 (299)
T PRK05710 7 IGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP-------------------PRE------------- 52 (299)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC-------------------Ccc-------------
Confidence 344479999999999999999999988764 4655555433332 111
Q ss_pred HHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 259 WKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 259 ~~~~~~~~i~~ql~rlG~s~DW~r-~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
..++.+.|.++|+.||+ +|+. .|+.+ ++...-.++..+|.++|++|.-.
T Consensus 53 -~~~~~~~I~~dL~wlGl--~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C~ 102 (299)
T PRK05710 53 -VPGAADAILADLEWLGL--HWDGPVLYQS--QRHDAYRAALDRLRAQGLVYPCF 102 (299)
T ss_pred -chHHHHHHHHHHHHCCC--CCCCCceEee--ccHHHHHHHHHHHHHCCCceecC
Confidence 23456789999999995 5663 56654 35566778889999999999754
No 95
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.22 E-value=0.00096 Score=79.95 Aligned_cols=97 Identities=27% Similarity=0.320 Sum_probs=68.1
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
+++==||.|||.||||||++.++...++|- ..|.-+|..==+|- ++.
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRieDTd~-------------------~r~------------ 76 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRFDDTNP-------------------EKE------------ 76 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCCC-------------------CcC------------
Confidence 556668999999999999999999999985 35666655433332 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
..++.+.|.++|+-||+..| +..+++.| |.....+.-.+|.++|++|...
T Consensus 77 --~~e~~~~I~~dL~wLGi~~d-~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c~ 126 (554)
T PRK05347 77 --DQEYVDSIKEDVRWLGFDWS-GELRYASD--YFDQLYEYAVELIKKGKAYVDD 126 (554)
T ss_pred --ChHHHHHHHHHHHHcCCCCC-CCceeeec--CHHHHHHHHHHHHHcCCEeeCC
Confidence 23556789999999997554 34566543 3333334446999999999764
No 96
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.20 E-value=0.0012 Score=71.22 Aligned_cols=86 Identities=31% Similarity=0.383 Sum_probs=63.5
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHH
Q 001757 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1017)
Q Consensus 182 pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~ 261 (1017)
=+|.|||.||+||+++.++.-.++|-+ .|.=++..==+|. .| -..
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~-------------------~R--------------~~~ 50 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTDP-------------------ER--------------SRP 50 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCC-------------------CC--------------CCh
Confidence 379999999999999999999998864 5666665544443 11 023
Q ss_pred HHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHhhCC
Q 001757 262 EYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEG 306 (1017)
Q Consensus 262 ~~~~~i~~ql~rlG~s~DW~r-~~~T~d~~y~~~v~~~F~~L~ekG 306 (1017)
++.+.|.++|+.||+ +|+. .|+.. ++...-+++..+|.++|
T Consensus 51 ~~~~~I~~dL~wlGl--~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 51 EYVESILEDLKWLGL--DWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHHHHHHHHcCC--CCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 456789999999996 5556 56544 44555677888999999
No 97
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.18 E-value=0.0012 Score=77.77 Aligned_cols=93 Identities=29% Similarity=0.336 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHH
Q 001757 181 LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK 260 (1017)
Q Consensus 181 ~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~ 260 (1017)
==+|.|||.||||||++.+..-.++|-+ .|.=++.+==+|. + .-.
T Consensus 6 RFAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRIEDTD~---------~------------------------Rs~ 50 (445)
T PRK12558 6 RFAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRIDDTDL---------E------------------------RSK 50 (445)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeccCCc---------c------------------------cch
Confidence 3479999999999999999998888753 5666666555552 0 012
Q ss_pred HHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 261 DEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 261 ~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
+++.+.|.++|+.||+.+| ..|+- ..+...+.++..+|.++|++|+..
T Consensus 51 ~~~~~~I~e~L~wLGI~~D--e~y~Q--Ser~~~y~~~~e~L~e~G~AY~C~ 98 (445)
T PRK12558 51 QEYADAIAEDLKWLGINWD--RTFRQ--SDRFDRYDEAAEKLKAAGRLYPCY 98 (445)
T ss_pred HHHHHHHHHHHHHcCCCCC--ccccH--HHHHHHHHHHHHHHHHCCCEEEec
Confidence 4456789999999998766 43332 233457889999999999998764
No 98
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.17 E-value=0.0011 Score=79.06 Aligned_cols=94 Identities=29% Similarity=0.381 Sum_probs=70.5
Q ss_pred ECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHH
Q 001757 180 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 259 (1017)
Q Consensus 180 ~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~ 259 (1017)
+==.|.|||.||||||++.++.-.++| ...|.=++.+==+|. +| -
T Consensus 7 tRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~-------------------~R--------------~ 51 (513)
T PRK14895 7 TRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK-------------------ER--------------S 51 (513)
T ss_pred EeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc-------------------cc--------------c
Confidence 344799999999999999999999998 557877776655553 01 1
Q ss_pred HHHHHHHHHHHHHHhccccccC-CccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 260 KDEYGGTILRQQRRLGASLDWS-RECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 260 ~~~~~~~i~~ql~rlG~s~DW~-r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
..++.+.|.+.|+-||+ ||+ .+|+.++ +...-.++..+|.++|.+|+..
T Consensus 52 ~~~~~~~i~~~L~WLGl--~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~Cf 101 (513)
T PRK14895 52 TKEAVEAIFSGLKWLGL--DWNGEVIFQSK--RNNLYKEAALKLLQNGKAYYCF 101 (513)
T ss_pred ChHHHHHHHHHHHHcCC--CCCCCceeEeC--cHHHHHHHHHHHHHcCCeEEec
Confidence 23456789999999995 666 4676654 3455677888999999999764
No 99
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.12 E-value=0.0013 Score=77.24 Aligned_cols=91 Identities=16% Similarity=0.251 Sum_probs=68.7
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHH
Q 001757 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1017)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~ 262 (1017)
.|.|||.||||||++.++.-.++|- ..|.=+|.+==+|.. | -..+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD~~-------------------R--------------~~~e 49 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTDKE-------------------R--------------NIEG 49 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCCC-------------------c--------------CChH
Confidence 6999999999999999999998875 457777766555531 1 1234
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 263 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 263 ~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
+.+.|.+.|+-||+ ||+..|+.++ +...-.++..+|.++|.+|...
T Consensus 50 ~~~~I~~~L~WlGl--~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~C~ 95 (433)
T PRK12410 50 KDKEILEILNLFGI--SWDKLVYQSE--NLKFHRQMAEKLLSEKKAFACF 95 (433)
T ss_pred HHHHHHHHHHHcCC--CCCCCeehhc--cHHHHHHHHHHHHHcCCeeeec
Confidence 56789999999996 5667777654 3345667888999999999764
No 100
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.37 Score=55.48 Aligned_cols=157 Identities=18% Similarity=0.271 Sum_probs=91.7
Q ss_pred EEEcceeeCCCCccccccCCcccCcccccccc---chhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHH
Q 001757 689 VYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI---SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFA 765 (1017)
Q Consensus 689 V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~---~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~ 765 (1017)
-+--|+|+..+|+|+-...|.+|-..|+++.. +.+.|..+=+.--+.|.|+..|...- .|| ++.|+
T Consensus 434 HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eav---------ayG--ciKYa 502 (656)
T KOG4426|consen 434 HVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAV---------AYG--CIKYA 502 (656)
T ss_pred eeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH---------Hhc--chhHh
Confidence 34458899999999999999999999998732 22333333334468899997665432 344 45665
Q ss_pred HHhccCCCccccccHHHHHH------------HHHHHHHHHHHHHH-H--HhhhCCCCCCCCCCCCCCCChhhHHHH-HH
Q 001757 766 LVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRF-S--MSKLGEGFVPPLKLHPHNLPFSCKWIL-SV 829 (1017)
Q Consensus 766 L~~~~~~~~Dinf~~~~v~~------------~r~f~nkl~N~~rf-~--l~~l~~~~~p~~~~~~~~~~~~Drwil-~~ 829 (1017)
=++.+. -.|--|+.+.+-. |.+.|.-+++.-.- . ...+.. .+ .+ .+...+.|-| ..
T Consensus 503 DL~hnR-~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkk--T~--ki---~LDH~~E~kLg~~ 574 (656)
T KOG4426|consen 503 DLSHNR-ITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKK--TG--KI---ALDHEKEWKLGKH 574 (656)
T ss_pred hhcccc-ccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHh--cC--cc---ccCCHHHHHHHHH
Confidence 443332 2466777765432 33444433332110 0 000000 00 11 2333445544 34
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHH
Q 001757 830 LNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVF 865 (1017)
Q Consensus 830 L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Y 865 (1017)
|-++.+.+..+.++.-.+..+..+|+.. ..|..+|
T Consensus 575 lLkf~e~v~~~~~~L~lh~lC~y~y~l~-t~Ft~FY 609 (656)
T KOG4426|consen 575 LLKFAEIVEKALDSLFLHVLCDYLYELA-TLFTEFY 609 (656)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 5667777778888888888888888875 6777777
No 101
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.06 E-value=0.0014 Score=78.18 Aligned_cols=92 Identities=28% Similarity=0.361 Sum_probs=67.0
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHH
Q 001757 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1017)
Q Consensus 182 pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~ 261 (1017)
=+|.|||.||||||++.++.-.++|- ..|.=++.+==+|. .| -..
T Consensus 6 fAPsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLRieDtD~-------------------~R--------------~~~ 50 (470)
T TIGR00464 6 FAPSPTGYLHIGGARTALFNYLFAKH--TGGEFILRIEDTDL-------------------ER--------------NIE 50 (470)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-------------------cc--------------CCh
Confidence 37999999999999999999999984 35666665544442 11 123
Q ss_pred HHHHHHHHHHHHhccccccC-CccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 262 EYGGTILRQQRRLGASLDWS-RECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 262 ~~~~~i~~ql~rlG~s~DW~-r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
++.+.|.+.|+-||+ +|+ .+|+.++ +...-.++..+|.++|++|+..
T Consensus 51 ~~~~~i~~~L~wlGl--~~de~~~~QS~--r~~~y~~~~~~L~~~g~aY~C~ 98 (470)
T TIGR00464 51 EAEEAILEGLKWLGI--SWDEGPYYQSQ--RLDIYKKYAKELLEEGLAYRCY 98 (470)
T ss_pred HHHHHHHHHHHHCCC--CCCCCeeehhC--CHHHHHHHHHHHHHcCCEEecC
Confidence 456789999999995 566 5666554 3344567778999999999764
No 102
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.03 E-value=0.0014 Score=81.87 Aligned_cols=96 Identities=28% Similarity=0.348 Sum_probs=70.3
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
+++==||.|||.||||||++.++...++|- ..|.-.|..==+|- .+
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR~eDTd~-------------------~r------------- 77 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLRMDDTNP-------------------ET------------- 77 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeCCCCC-------------------Cc-------------
Confidence 667779999999999999999999999974 35655555433331 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r-~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
-..+|.+.|.++|+-||+. |+. .|++. +|.....+...+|.++|+.|...
T Consensus 78 -~~~e~~~~I~~dl~wLG~~--wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~c~ 128 (771)
T PRK14703 78 -EDTEYVEAIKDDVRWLGFD--WGEHLYYAS--DYFERMYAYAEQLIKMGLAYVDS 128 (771)
T ss_pred -CChHHHHHHHHHHHHcCCC--CCCCceEee--cCHHHHHHHHHHHHHcCCcccCc
Confidence 1245668999999999965 544 35554 56666778888999999999754
No 103
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.86 E-value=0.004 Score=67.86 Aligned_cols=86 Identities=28% Similarity=0.346 Sum_probs=60.3
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHH
Q 001757 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1017)
Q Consensus 182 pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~ 261 (1017)
=+|.|||.||+||+++.++.-.++|- ..|.=.+.+==+|. .+. ..
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~-------------------~r~--------------~~ 50 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQ-------------------ERS--------------VP 50 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCC-------------------CCC--------------ch
Confidence 37999999999999999999998884 35644443333332 110 13
Q ss_pred HHHHHHHHHHHHhccccccCC---------ccccCChhhHHHHHHHHHHHhhCC
Q 001757 262 EYGGTILRQQRRLGASLDWSR---------ECFTMDEKRSKAVTEAFVRLYKEG 306 (1017)
Q Consensus 262 ~~~~~i~~ql~rlG~s~DW~r---------~~~T~d~~y~~~v~~~F~~L~ekG 306 (1017)
++.+.|.++|..||+ ||+. .|+..+ +.....++..+|.++|
T Consensus 51 ~~~~~i~~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 51 EAEEAILEALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHHHHHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 445788899999995 6667 566654 4555667788898888
No 104
>PLN02627 glutamyl-tRNA synthetase
Probab=96.79 E-value=0.0034 Score=75.22 Aligned_cols=96 Identities=28% Similarity=0.373 Sum_probs=70.1
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
+.+==+|.|||.||||||++.++.-.++| ...|.=++.+==+|.. |
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~~-------------------R------------- 91 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDLA-------------------R------------- 91 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC-------------------C-------------
Confidence 44555789999999999999999999998 4567777766555531 1
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC---------ccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSR---------ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r---------~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
-..++.+.|.++|+-||+ ||+. +|+-+ ++...-.++..+|.++|.+|+..
T Consensus 92 -~~~e~~~~I~~~L~WLGl--~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~Cf 150 (535)
T PLN02627 92 -STKESEEAVLRDLKWLGL--DWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYPCF 150 (535)
T ss_pred -CChHHHHHHHHHHHHcCC--CCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeeecc
Confidence 124456789999999995 6664 24443 33455577888999999999764
No 105
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.64 E-value=0.0058 Score=73.19 Aligned_cols=95 Identities=28% Similarity=0.320 Sum_probs=69.2
Q ss_pred EECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHH
Q 001757 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1017)
Q Consensus 179 i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~ 258 (1017)
.+==+|-|||.||||||++.++.-.++|-+ .|.-+|.+==+|.. |
T Consensus 6 ~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRieDtD~~-------------------R-------------- 50 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIEDTDQE-------------------R-------------- 50 (476)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcCCCC-------------------C--------------
Confidence 344479999999999999999999998863 57666665444431 1
Q ss_pred HHHHHHHHHHHHHHHhccccccCCc--------cccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 259 WKDEYGGTILRQQRRLGASLDWSRE--------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 259 ~~~~~~~~i~~ql~rlG~s~DW~r~--------~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
-...+.+.|.++|+-||+ +|+.. |+.++ +...-.+...+|.++|++|+..
T Consensus 51 ~~~~~~~~i~~~L~wlGl--~~De~p~~~~~gpy~QS~--r~~~y~~~~~~L~~~g~aY~C~ 108 (476)
T PRK01406 51 STEEAEEAILEGLKWLGL--DWDEGPDGGPYGPYRQSE--RLDIYKEYAEQLLEEGKAYYCY 108 (476)
T ss_pred CChHHHHHHHHHHHHCCC--CCCCCCccCCCCceehhc--CHHHHHHHHHHHHHcCCeeecC
Confidence 124456789999999995 56544 55543 3456677888999999999764
No 106
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.54 E-value=0.39 Score=48.84 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=81.8
Q ss_pred CCCchHHHHHHHhccCCCccccccHHHHHHHH--------HHHHHHHHHHHHHHhhhCCCCCCCCCCCCC-CCChhhHHH
Q 001757 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGYR--------QWCNKLWNAVRFSMSKLGEGFVPPLKLHPH-NLPFSCKWI 826 (1017)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r--------~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~-~~~~~Drwi 826 (1017)
+.|.|++||.+++.+. ..++.||++.+.... .-..++.|+++-. ..........+.. -....++-+
T Consensus 2 ~i~~~a~~~~~l~~~~-~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~----~~~~~~~~~~~~~ll~~~~E~~L 76 (156)
T cd07956 2 EVGVGAVKYQDLSNKR-IKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKA----GETIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred ccchhHHHHHHHhcCC-CCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhC----CCcCccccccchhhcCCHHHHHH
Confidence 5789999999998665 458999998754211 1122333333221 1000000011111 123456677
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 001757 827 LSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLH 903 (1017)
Q Consensus 827 l~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~ 903 (1017)
+..+..+.+.+..++++.+++.++..++++. ..+.++ ++.+ .+..++.+....|......+..++..++.||.
T Consensus 77 ~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~f-fd~v--~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llg 149 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKF-YNAC--PVLGAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHH-HhcC--cccCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888899999999999999999984 455444 4543 22223333222455555566666777777763
No 107
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.49 E-value=0.019 Score=63.88 Aligned_cols=58 Identities=29% Similarity=0.265 Sum_probs=40.0
Q ss_pred ccccceeecccchH-HHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCcccccc
Q 001757 656 TSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 718 (1017)
Q Consensus 656 ~dl~~~G~Dil~fW-~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~ 718 (1017)
.++...|.||.... .+|-++- .+....|| .++|.++.+.+|+|||||.||.++ ..+.+
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~--r~~~~~~~--~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d 210 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIR--KLGYKKVV--GLTTPLLTGLDGGKMSKSEGNAIW-DPVLD 210 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHH--HhCCCCcE--EEeeccccCCCCCcccCCCCCccc-ccCCC
Confidence 47888899996332 2222322 22333454 578999999999999999999997 55544
No 108
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.043 Score=64.32 Aligned_cols=98 Identities=29% Similarity=0.398 Sum_probs=70.5
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHH
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1017)
|++-=||-|+|.||||||-...+-- |... -|+=-.+.-||..--+
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNq----Yfa~-~~~G~LIvRFDDTNPa------------------------------ 245 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQ----YFAQ-AYQGKLIVRFDDTNPA------------------------------ 245 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHH----HHHH-hcCceEEEEecCCCcc------------------------------
Confidence 4455589999999999998766532 3222 2233355667765422
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEccee
Q 001757 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRL 314 (1017)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~~~ 314 (1017)
+=.++|.+.|.+++..|||-.| .+|...+|-..+...=++|.++|..|-+..|
T Consensus 246 KE~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 246 KENEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hhhHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCc
Confidence 1135567899999999999998 4566677888888899999999999987754
No 109
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.13 E-value=0.018 Score=67.79 Aligned_cols=60 Identities=27% Similarity=0.141 Sum_probs=41.6
Q ss_pred CCccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCcccc
Q 001757 654 YPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dv 716 (1017)
+.+++...|.||....... .-+.-.+.+..| -.+++.++.+.+|.|||||.||.|+..|=
T Consensus 185 ~~~~iq~gG~DQ~~ni~~g-rdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMG-RDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCCEEEecHHHHHHHHHH-HHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 4678888999996432211 111223344445 46688899999999999999999987664
No 110
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.04 E-value=0.043 Score=61.22 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=40.3
Q ss_pred CCccccceeecccch-HHHHHHHHHhhhcC-CCCceEEEEcceeeCCCCccccccCCcccCcccccc
Q 001757 654 YPTSVLETGHDILFF-WVARMVMLGIKLGG-EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 718 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~f-W~a~~~~~~~~l~~-~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~ 718 (1017)
+..++...|.||... =.+|-++- .+.+ ..| ..+++.++.+.+|.|||||.||.|+...+.+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~--r~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~d 214 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELAR--RFNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKWLDTEKT 214 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHH--HhCCCCCC--eEEeeccccCCCCCcCCCCCCCCccccccCC
Confidence 345788889999532 22233322 2222 245 3566689999999999999999987655544
No 111
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=94.41 E-value=0.032 Score=65.64 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=41.9
Q ss_pred CCccccceeecccchHH-HHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCcccc
Q 001757 654 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~fW~-a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dv 716 (1017)
|.+++...|.||..... .|-++- .+..+.+| .++..++.+.+|+|||||.||.|+..|-
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~--r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d~ 246 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQR--RYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDEE 246 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHH--HhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCCC
Confidence 57889999999974322 233332 23334444 4678888899999999999999988763
No 112
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.27 E-value=0.086 Score=52.72 Aligned_cols=50 Identities=28% Similarity=0.173 Sum_probs=34.9
Q ss_pred ccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccC
Q 001757 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSL 707 (1017)
Q Consensus 656 ~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSl 707 (1017)
.++++.|.||.. ++.....+.-++.+..+ ...+.+|+|...+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 578889999976 44444444444434322 356778999988899999995
No 113
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.82 E-value=0.12 Score=58.09 Aligned_cols=63 Identities=22% Similarity=0.140 Sum_probs=39.5
Q ss_pred CCccccceeecccch-HHHHHHHHHhhhcCCCCceEEEEcceeeCCCCc-cccccCCc-ccCcccc
Q 001757 654 YPTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR-KMSKSLGN-VIDPLEV 716 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~f-W~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~-KMSKSlGN-vIdP~dv 716 (1017)
+-+++...|.||... =++|-++-.+......|--..+++.++...+|. |||||.+| .|+..|-
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 345688889999643 333433333222111222467888899999999 99999999 7766543
No 114
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.74 E-value=1.6 Score=51.65 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeee------------
Q 001757 151 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV------------ 218 (1017)
Q Consensus 151 ~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~------------ 218 (1017)
-++.-....|++...|....-...++-++-..-||.+-..|+||.++.+|.-.++.-++-.|+.|.-+
T Consensus 86 ~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgl 165 (567)
T KOG1195|consen 86 LIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGL 165 (567)
T ss_pred HHHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhH
Confidence 35566677788777776653233467888889999999999999999999999999999999999763
Q ss_pred --cccCccCh-------hHHHHHHHHHHHHhc----CCccccChHHHH-------HHH--HH-HHHHHHHHHHHHHHHhc
Q 001757 219 --PGMDHAGI-------ATQVVVEKKLMRERK----LTRHDIGREQFV-------SEV--WK-WKDEYGGTILRQQRRLG 275 (1017)
Q Consensus 219 --pG~D~~Gl-------piq~~vEk~l~~~~~----~~~~~~g~e~f~-------~~~--~~-~~~~~~~~i~~ql~rlG 275 (1017)
-||--.|- ||+...+..+..... .+..+.-++-|. +.. |+ +.+.-+....+...|||
T Consensus 166 l~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~ 245 (567)
T KOG1195|consen 166 LALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLN 245 (567)
T ss_pred HhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhc
Confidence 24444443 444333332211111 111111122221 112 22 44555666677889999
Q ss_pred cccccCCccccCChhhHHHHHHHHHHHhhCCcE
Q 001757 276 ASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLI 308 (1017)
Q Consensus 276 ~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlI 308 (1017)
+-+| .|---+.-+.+..+.+...+...||+
T Consensus 246 v~FD---~y~gESqv~~e~~~~~~d~~rs~~l~ 275 (567)
T KOG1195|consen 246 VKFD---EYSGESQVSNEKMQEALDLLRSANLT 275 (567)
T ss_pred eeee---eccchHHHHHHHHHHHHHHHHhcCCc
Confidence 9999 22222335667777777777777754
No 115
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=92.70 E-value=0.41 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEcceeeCCCCccccccCCc
Q 001757 688 KVYLHPMIRDAHGRKMSKSLGN 709 (1017)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlGN 709 (1017)
...-+++++|.+|+|||||.|+
T Consensus 139 ~~~H~pll~~~~g~KLSKr~~~ 160 (230)
T cd00418 139 RFYHFPRLLLEDGTKLSKRKLN 160 (230)
T ss_pred eEEEeeeeeCCCCCCccCcCCC
Confidence 5677799999999999999998
No 116
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=92.42 E-value=0.12 Score=59.22 Aligned_cols=60 Identities=30% Similarity=0.399 Sum_probs=38.7
Q ss_pred CCccccceeecccc-hHHHHHHHHHhhh-cC---CCCceEEE--EcceeeCCCCccccccCCcccCcc
Q 001757 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVY--LHPMIRDAHGRKMSKSLGNVIDPL 714 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~~~~~~~~l-~~---~~Pfk~V~--~Hg~v~D~~G~KMSKSlGNvIdP~ 714 (1017)
|.+|+...|.||.. +=++|-++....- .| ..| ..++ .|.++...+|+|||||.+|.|...
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~ 214 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPLF 214 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCccccc
Confidence 56678888999973 4455665543221 11 234 3333 367777889999999999988543
No 117
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.36 E-value=0.16 Score=59.65 Aligned_cols=60 Identities=27% Similarity=0.325 Sum_probs=38.3
Q ss_pred CCccccceeecccc-hHHHHHHHHHhhh-cC----CCCceEEEE--cceeeCCCCccccccCCcccCcc
Q 001757 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG----EVPFTKVYL--HPMIRDAHGRKMSKSLGNVIDPL 714 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~~~~~~~~l-~~----~~Pfk~V~~--Hg~v~D~~G~KMSKSlGNvIdP~ 714 (1017)
|-+++...|.||.. .=++|-++..... .| ..| ..++. +..|.+.+|+|||||.||.|...
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~ 214 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLF 214 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeec
Confidence 55677778999963 4445655543221 11 134 33332 45777889999999999999554
No 118
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.23 E-value=0.19 Score=63.49 Aligned_cols=80 Identities=25% Similarity=0.298 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCccccccc--------------cccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCceE
Q 001757 477 REAVNEALKKKGLYRGAKDN--------------EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 542 (1017)
Q Consensus 477 r~~Vi~~L~~~gl~~~~~~~--------------~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~ 542 (1017)
-+-+.-.|.++||+...+.. .-....|||||.+|+.+-.+|||++.++.++++++.+ ..+.
T Consensus 137 ~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l-----~~l~ 211 (814)
T COG0495 137 IQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDL-----DKLA 211 (814)
T ss_pred HHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhh-----hhhc
Confidence 34577889999997654321 1223579999999999999999999999999999887 4565
Q ss_pred -EeccccHHHHHHHHhhccC
Q 001757 543 -LIPRQYTAEWRRWLEAIRD 561 (1017)
Q Consensus 543 -~~P~~~~~~~~~wl~~l~D 561 (1017)
..|+..+..-.+||..-..
T Consensus 212 ~~wPE~Vk~mq~nWIg~s~g 231 (814)
T COG0495 212 TLWPETVKGMQRNWIGPSEG 231 (814)
T ss_pred cCCchhHHHHHHcCcCCCCC
Confidence 5899999888888864433
No 119
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=90.96 E-value=0.23 Score=63.91 Aligned_cols=82 Identities=22% Similarity=0.262 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHcCCccccccc--------------c-ccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCC
Q 001757 475 KAREAVNEALKKKGLYRGAKDN--------------E-MRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1017)
Q Consensus 475 ~ar~~Vi~~L~~~gl~~~~~~~--------------~-~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~ 539 (1017)
++-..+...|-++|++...+.. + ...++|||||.+++.+-.+|||++++++++++++.+ +
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l-----~ 204 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDL-----E 204 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHH-----h
Confidence 3455677888899986533211 1 112689999999999999999999999999999988 4
Q ss_pred ceEEeccccHHHHHHHHhhccC
Q 001757 540 KLELIPRQYTAEWRRWLEAIRD 561 (1017)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~D 561 (1017)
.+...|++.++...+||..-.-
T Consensus 205 ~~~~wp~~v~~~q~~wig~s~g 226 (842)
T TIGR00396 205 ELDHWPESVKEMQRNWIGKSEG 226 (842)
T ss_pred hhccccHHHHHHHHhcccccce
Confidence 5666899999999999865443
No 120
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.51 E-value=0.52 Score=51.54 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=34.6
Q ss_pred ccccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCc
Q 001757 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN 709 (1017)
Q Consensus 656 ~dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGN 709 (1017)
.+..+-|.|.+ ....++..+.-+|.-..| .+..++++++.+|+||||+.||
T Consensus 119 ithViRG~D~~-~~t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~ 169 (239)
T cd00808 119 ITHVIRGEEHL-SSTPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD 169 (239)
T ss_pred CCEEEEChhhh-hChHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC
Confidence 34455577754 445555555555544445 4666788889999999999999
No 121
>PLN02563 aminoacyl-tRNA ligase
Probab=90.44 E-value=0.36 Score=62.66 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHcCCccccccc--------------cccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCc
Q 001757 475 KAREAVNEALKKKGLYRGAKDN--------------EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKK 540 (1017)
Q Consensus 475 ~ar~~Vi~~L~~~gl~~~~~~~--------------~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~ 540 (1017)
..-..+...|-++|++...+.. +-.+++|+|||.+++.+-..|||++++++++++++.+ + .
T Consensus 212 ~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l---~--~ 286 (963)
T PLN02563 212 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDL---D--D 286 (963)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhh---h--h
Confidence 4556788999999997654321 2235789999999999999999999999999999998 3 4
Q ss_pred eEEeccccHHHHHHHHhhcc
Q 001757 541 LELIPRQYTAEWRRWLEAIR 560 (1017)
Q Consensus 541 i~~~P~~~~~~~~~wl~~l~ 560 (1017)
+. .|+..++.-.+||..-.
T Consensus 287 ~~-wp~~v~~~q~nwiG~s~ 305 (963)
T PLN02563 287 LD-WPESIKEMQRNWIGRSE 305 (963)
T ss_pred cC-CCHHHHHHHHHhccccc
Confidence 55 59999999999986543
No 122
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=90.40 E-value=0.3 Score=56.09 Aligned_cols=58 Identities=29% Similarity=0.323 Sum_probs=41.7
Q ss_pred CCccccceeecccc-hHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCc--cccccC-CcccCccc
Q 001757 654 YPTSVLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR--KMSKSL-GNVIDPLE 715 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~--KMSKSl-GNvIdP~d 715 (1017)
|.+|+...|.||.. +=++|-++-. +....| ..+.|.++.+.+|. |||||. ||.|...|
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 56788888999974 3444444432 233456 46679999999988 999999 99997654
No 123
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=89.71 E-value=0.32 Score=56.77 Aligned_cols=56 Identities=23% Similarity=0.188 Sum_probs=36.2
Q ss_pred ccccceeecccchH-HHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccc
Q 001757 656 TSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 715 (1017)
Q Consensus 656 ~dl~~~G~Dil~fW-~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~d 715 (1017)
.|+...|.||...- ..++++ -.+.+..+| .+++.++...+|.|||||.||.|+..+
T Consensus 178 ~di~~gG~DQ~~ni~~g~dLa--r~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 178 VDLQIGGSDQWGNIRKGRDLI--RRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCeeEecchhHHHHHHHHHHH--HHhcCCCce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 56888899996321 122222 222334343 366667777889999999999997643
No 124
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=89.28 E-value=0.31 Score=55.92 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=39.3
Q ss_pred hCCccccceeecccc-hHHHHHHHHHhhh-cCC----CCceEEEE-cceeeCCCC-ccccccCCcccCccc
Q 001757 653 FYPTSVLETGHDILF-FWVARMVMLGIKL-GGE----VPFTKVYL-HPMIRDAHG-RKMSKSLGNVIDPLE 715 (1017)
Q Consensus 653 ~~P~dl~~~G~Dil~-fW~a~~~~~~~~l-~~~----~Pfk~V~~-Hg~v~D~~G-~KMSKSlGNvIdP~d 715 (1017)
.|.+|+...|.||.. +=++|-++-.+.. .++ .| +.++. |.+|.+.+| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p-~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP-EALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc-hhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 367788889999963 4556666544331 121 12 22221 567777777 899999999886544
No 125
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.82 E-value=0.37 Score=54.47 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=37.3
Q ss_pred CCccccceeecccc-hHHHHHHHHHhhh-c-CCCCceEEEEcc--eeeCCCC-ccccccCCc-ccCccc
Q 001757 654 YPTSVLETGHDILF-FWVARMVMLGIKL-G-GEVPFTKVYLHP--MIRDAHG-RKMSKSLGN-VIDPLE 715 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~~~~~~~~l-~-~~~Pfk~V~~Hg--~v~D~~G-~KMSKSlGN-vIdP~d 715 (1017)
|-+++.-.|.||-- .=.+|=++.-... . ...|--..+.|. .+.+.+| +|||||.+| +|...|
T Consensus 144 ~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 144 YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred ccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 34456667888852 3344444433221 0 111222667777 8888999 899999999 775433
No 126
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=88.67 E-value=0.32 Score=55.73 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCccccceeecccc-hHHHHHHHHHhhh-cC---CCCceEEEEcce---eeCCCCccccccCCc-ccCccc
Q 001757 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVYLHPM---IRDAHGRKMSKSLGN-VIDPLE 715 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~~~~~~~~l-~~---~~Pfk~V~~Hg~---v~D~~G~KMSKSlGN-vIdP~d 715 (1017)
|-+|+...|.||.. +=++|-++--+.- .| ..| ..+.|.+ +...+|+|||||.+| .|...|
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 34567788999963 4555655543321 11 345 3445555 556677899999997 765443
No 127
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=88.38 E-value=0.42 Score=55.84 Aligned_cols=59 Identities=27% Similarity=0.233 Sum_probs=38.1
Q ss_pred CCccccceeecc-cchHHHHHHHHHhhhcCCCCceEEEEcceeeCC-CC-ccccccCCc-ccCccc
Q 001757 654 YPTSVLETGHDI-LFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDA-HG-RKMSKSLGN-VIDPLE 715 (1017)
Q Consensus 654 ~P~dl~~~G~Di-l~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~-~G-~KMSKSlGN-vIdP~d 715 (1017)
|-+|+...|.|| -++=++|-++-.... ...| -++.|.+|... +| .|||||.+| .|...|
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~~~-~~~~--~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKKKI-KKKP--IILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHhCC-CCCc--eeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 567788889999 455556655543321 1123 34468888877 45 799999987 576544
No 128
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.10 E-value=0.33 Score=56.40 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=38.5
Q ss_pred Cccccceeecccc-hHHHHHHHHHh--hhcCCCCceEEEEcceeeCCCCccccccC-CcccCccc
Q 001757 655 PTSVLETGHDILF-FWVARMVMLGI--KLGGEVPFTKVYLHPMIRDAHGRKMSKSL-GNVIDPLE 715 (1017)
Q Consensus 655 P~dl~~~G~Dil~-fW~a~~~~~~~--~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSl-GNvIdP~d 715 (1017)
-.++...|.||.. +=++|-++-.+ ...-..| ..+.|.++...+|.|||||. +|.|...|
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 4456777999963 44555555433 0112235 34557788889999999998 67887654
No 129
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.99 E-value=1.3 Score=53.06 Aligned_cols=97 Identities=27% Similarity=0.293 Sum_probs=61.6
Q ss_pred EEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHH
Q 001757 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1017)
Q Consensus 177 f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~ 256 (1017)
-|.+-=||-|||.||||||-..-+-==++++ +.|..-|. +|..- | |+
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyLR---fDDTN-P-----Ek---------------------- 294 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYLR---FDDTN-P-----EK---------------------- 294 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEEe---cCCCC-c-----ch----------------------
Confidence 3566679999999999998654443334443 23433322 33321 1 11
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcEEEcc
Q 001757 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1017)
Q Consensus 257 ~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlIYr~~ 312 (1017)
=.++|-..|++...-|| |.-.-.|.+.+|-....+.=+.|..+|+.|-..
T Consensus 295 --Eee~yf~sI~e~V~WLG----~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcH 344 (764)
T KOG1148|consen 295 --EEEEYFESIKEMVAWLG----FEPYKVTYSSDYFDQLYELAVELIRKGKAYVCH 344 (764)
T ss_pred --hhHHHHHHHHHHHHHhC----CCceeeecchhHHHHHHHHHHHHHhcCceeEEe
Confidence 12344566676666666 556667888888777777778899999998543
No 130
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.82 E-value=0.49 Score=55.38 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=35.6
Q ss_pred ccccceeecccchHHHHHHHHHh--hhcCCCCceEEEEcceeeCCCCccccccCCcccC
Q 001757 656 TSVLETGHDILFFWVARMVMLGI--KLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVID 712 (1017)
Q Consensus 656 ~dl~~~G~Dil~fW~a~~~~~~~--~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvId 712 (1017)
.|+.+.|.|| |..-++..-+ .+.+.. .-.+++.++.+.+|.|||||.||.++
T Consensus 181 ~dlq~GG~DQ---~~ni~~grdl~rr~g~~~--~~~lt~PLL~~ldG~KmgKs~~~a~~ 234 (401)
T COG0162 181 KDLQLGGSDQ---WGNILAGRDLIRRLGQKK--VVGLTTPLLTGLDGKKMGKSEGGAVW 234 (401)
T ss_pred cchhcCChHH---HHHHHHHHHHHHHhCCCC--eEEEEeccccCCCCCcccccCCCceE
Confidence 4588889998 4444433222 223333 45788899999999999999999443
No 131
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=87.63 E-value=2.7 Score=48.94 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCc
Q 001757 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1017)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1017)
-|-|||.||+|-++|...-=+++|- ..|.-++.+=-+|-
T Consensus 39 APSPTGfLHlGgLRTALfNYLfArk--~gGkFiLRiEDTDq 77 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFARK--KGGKFILRIEDTDQ 77 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHHh--cCCeEEEEeccccc
Confidence 5888999999999998888777774 46888888777774
No 132
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=85.76 E-value=0.8 Score=51.36 Aligned_cols=59 Identities=22% Similarity=0.159 Sum_probs=36.9
Q ss_pred Cccccceeecccc-hHHHHHHHHHhhhc----CCCCceEEEEc--ceeeCCCC--ccccccCC-cccCccc
Q 001757 655 PTSVLETGHDILF-FWVARMVMLGIKLG----GEVPFTKVYLH--PMIRDAHG--RKMSKSLG-NVIDPLE 715 (1017)
Q Consensus 655 P~dl~~~G~Dil~-fW~a~~~~~~~~l~----~~~Pfk~V~~H--g~v~D~~G--~KMSKSlG-NvIdP~d 715 (1017)
-+++...|.||.. +=++|-++-.+.-. -..| ..+.| .+|...+| .|||||.| |.|...|
T Consensus 137 ~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P--~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 137 KACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKP--AALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred cCCEEeeccccHHHHHHHHHHHHHhccccccccCCC--eeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 3466777999953 23334433322200 1234 56667 88887777 59999999 9997655
No 133
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.92 E-value=0.47 Score=55.32 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=20.1
Q ss_pred cceeeCCCCccccccCCcccCccc
Q 001757 692 HPMIRDAHGRKMSKSLGNVIDPLE 715 (1017)
Q Consensus 692 Hg~v~D~~G~KMSKSlGNvIdP~d 715 (1017)
|..|.+.+|+|||||.||.|...|
T Consensus 254 ~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 254 ASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCcccCCCCCcCCCCCCCeeeCcC
Confidence 677888899999999999887544
No 134
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=84.83 E-value=1.2 Score=57.29 Aligned_cols=86 Identities=27% Similarity=0.322 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHcCCccccccc--------------cccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCC
Q 001757 474 FKAREAVNEALKKKGLYRGAKDN--------------EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1017)
Q Consensus 474 ~~ar~~Vi~~L~~~gl~~~~~~~--------------~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~ 539 (1017)
.++-..+...|-++|++...+.. +...++|+|||.+++.+..+|||+++.++++++++.+ +
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l---~-- 206 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDL---D-- 206 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHH---H--
Confidence 34556788889999987654221 2224789999999999999999999999999999887 3
Q ss_pred ceEEeccccHHHHHHHHhhccCccc
Q 001757 540 KLELIPRQYTAEWRRWLEAIRDWCV 564 (1017)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DWcI 564 (1017)
.+.=.|++.+..-.+||....-+.|
T Consensus 207 ~~~~w~~~v~~~~~~wig~~~~~~i 231 (805)
T PRK00390 207 KLEDWPEKVKTMQRNWIGRSEGAEV 231 (805)
T ss_pred hhccCcHHHHHHHHhhccccceEEE
Confidence 3322488888888899875544444
No 135
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=83.85 E-value=0.79 Score=52.73 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=39.4
Q ss_pred CCccccceeecccc-hHHHHHHHHHhhh-cC---CCCceEEEE-c-ceeeCCCCc--cccccCC---cccCccc
Q 001757 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVYL-H-PMIRDAHGR--KMSKSLG---NVIDPLE 715 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~~~~~~~~l-~~---~~Pfk~V~~-H-g~v~D~~G~--KMSKSlG---NvIdP~d 715 (1017)
|-+|+...|.||.. +=++|-++--+.. .| ..| ..++. | .+|...+|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 46788888999974 4555665543321 11 245 33443 2 668777877 9999999 7886554
No 136
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.61 E-value=0.38 Score=58.27 Aligned_cols=75 Identities=24% Similarity=0.273 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCccccccc---------------cccccccccCCCeeeeeccccceeecchHHHHHHHhhhccCCCce
Q 001757 477 REAVNEALKKKGLYRGAKDN---------------EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1017)
Q Consensus 477 r~~Vi~~L~~~gl~~~~~~~---------------~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i 541 (1017)
.+-|.=.|-++||....+-- .-.-..+||||.++|.....||||+.+++++++++.+ ..+
T Consensus 160 TQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L-----~~L 234 (876)
T KOG0435|consen 160 TQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGL-----ETL 234 (876)
T ss_pred HHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHH-----Hhh
Confidence 34566667777876543321 1134689999999999999999999999999999998 344
Q ss_pred EEeccccHHHHHHHHh
Q 001757 542 ELIPRQYTAEWRRWLE 557 (1017)
Q Consensus 542 ~~~P~~~~~~~~~wl~ 557 (1017)
.=.|+ .++.-.+||.
T Consensus 235 ~~W~~-vk~mQrnWIG 249 (876)
T KOG0435|consen 235 PEWPE-VKDMQRNWIG 249 (876)
T ss_pred hhhhh-HHHHHHhhcc
Confidence 33454 5555566664
No 137
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=82.62 E-value=3.5 Score=50.57 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=49.6
Q ss_pred EEEEcceeeCCCCccccccCCccc------CccccccccchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchH
Q 001757 688 KVYLHPMIRDAHGRKMSKSLGNVI------DPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDA 761 (1017)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlGNvI------dP~dvi~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDa 761 (1017)
..+-+|++. .+|.|||||++... +.-|=-.-.++.+|+.. .|-++|
T Consensus 325 ~~~H~~~L~-~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrr---------------------------G~~PeA 376 (567)
T PRK04156 325 ETIHYGRLK-IEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRR---------------------------GILPEA 376 (567)
T ss_pred eEEEcceec-CCCceeecccchhccccCccccccCCchHHHHHHHHc---------------------------CCCHHH
Confidence 456667776 68999999984311 11111111233444333 577999
Q ss_pred HHHHHHhccCCCccccccHHHHHHH-HHHHHHH
Q 001757 762 LRFALVSYTAQSDKINLDIQRVVGY-RQWCNKL 793 (1017)
Q Consensus 762 LR~~L~~~~~~~~Dinf~~~~v~~~-r~f~nkl 793 (1017)
+|.|++..+....|..|+++.+... |+.++..
T Consensus 377 i~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~ 409 (567)
T PRK04156 377 IRELIIEVGVKETDATISWENLYAINRKLIDPI 409 (567)
T ss_pred HHHHHHHhCCCCCCcccCHHHHHHHHHHHHhcc
Confidence 9999998776667999999988753 4455543
No 138
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=81.79 E-value=3.7 Score=49.54 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=61.3
Q ss_pred cccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccc-cchhhHHHHhh-cCCC
Q 001757 657 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING-ISLEGLHKRLE-EGNL 734 (1017)
Q Consensus 657 dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g-~~l~~l~~~l~-~~nl 734 (1017)
+..+-|.|++. ...+.+.+.-+|.-..| .+..++++++.+|+||||..| .+...++++. +.-+.+...+. .|..
T Consensus 199 thvIrG~d~~~-~t~~~~~l~~aLg~~~p--~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~ 274 (470)
T TIGR00464 199 THVIRGEDHIS-NTPKQILIYQALGWKIP--VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWS 274 (470)
T ss_pred CEEEECchhhc-CHHHHHHHHHHcCCCCC--eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCC
Confidence 44456777653 33444444334433334 566668888999999999999 6666666552 23233333321 2222
Q ss_pred ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH
Q 001757 735 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1017)
Q Consensus 735 ~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~ 785 (1017)
++.+ .. ..--.+++|++.+...+ ..++.||++.+.-
T Consensus 275 ~~~~-------------~e-~~~~~~~i~~f~l~~~~-~~~~~fd~~kL~~ 310 (470)
T TIGR00464 275 PPDD-------------QE-FFSLEELIEIFSLNRVS-KSPAKFDWKKLQW 310 (470)
T ss_pred CCCc-------------cc-cCCHHHHHHhcCcccCC-CCCCeecHHHHHH
Confidence 2110 00 01124889988766444 3588999988654
No 139
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=79.59 E-value=2.5 Score=45.39 Aligned_cols=50 Identities=22% Similarity=0.130 Sum_probs=32.5
Q ss_pred ccceeecccchHHHHHHHHHhhhcCC-CCceEEEEcceeeCCCCccccccCC
Q 001757 658 VLETGHDILFFWVARMVMLGIKLGGE-VPFTKVYLHPMIRDAHGRKMSKSLG 708 (1017)
Q Consensus 658 l~~~G~Dil~fW~a~~~~~~~~l~~~-~Pfk~V~~Hg~v~D~~G~KMSKSlG 708 (1017)
+++.|.||. .++.++..+.-.+.-. .|--..+.+|+|+..+|.||||..|
T Consensus 162 i~v~g~~~~-~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHH-GHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHH-HHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 457888865 4555555444333222 3433456679999888999999987
No 140
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=79.17 E-value=12 Score=43.75 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=39.8
Q ss_pred HHHHHcCCcccCCC--------CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCc
Q 001757 158 SWWENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1017)
Q Consensus 158 ~~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1017)
..+-..|+|-...+ ..+++|.+.+|. -|||.+||||.+. -..+.+++. .|+.+.+..+=+|
T Consensus 40 h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~h 108 (368)
T PRK12285 40 HPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDE 108 (368)
T ss_pred chHHhcCeeeecCCHHHHHHHHhcCCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchH
Confidence 45566777765443 234567777764 4679999999753 334566666 7888877776555
No 141
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=78.29 E-value=6.9 Score=42.85 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=25.0
Q ss_pred CCCchHHHHHHHhccCCCccccccHHHHHHH
Q 001757 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1017)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~ 786 (1017)
.+-++|++=|++..+....++.|+++.+...
T Consensus 197 G~~peal~~~l~~lG~s~~~~~~~~~~l~~~ 227 (238)
T cd00807 197 GVTPEAIRQFILRQGVSKADSTIDWDKLEAC 227 (238)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Confidence 3558999999988887778999999887653
No 142
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.68 E-value=3.7 Score=45.90 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=24.2
Q ss_pred CCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCc
Q 001757 186 VTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1017)
Q Consensus 186 ~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1017)
||| .|||||.+. -..+.++++ .|+++.+..|=.|
T Consensus 8 PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~d~~ 42 (273)
T cd00395 8 PTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIGGQT 42 (273)
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEecCc
Confidence 699 799999877 334555655 6889888777433
No 143
>PLN02486 aminoacyl-tRNA ligase
Probab=75.40 E-value=2.9 Score=48.91 Aligned_cols=54 Identities=26% Similarity=0.186 Sum_probs=33.6
Q ss_pred ccceeecccc-hHHHHHHHHHhhhcCCCCceEEEEcceeeCCCC--ccccccCCc-ccCccc
Q 001757 658 VLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 715 (1017)
Q Consensus 658 l~~~G~Dil~-fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G--~KMSKSlGN-vIdP~d 715 (1017)
+.-.|.||.. +=++|-++-- +....| .++.|.++....| .|||||.+| .|...|
T Consensus 222 lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred eeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC
Confidence 4445999863 4445554433 334456 3444566766666 799999988 687655
No 144
>PLN02486 aminoacyl-tRNA ligase
Probab=75.10 E-value=12 Score=43.82 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=28.6
Q ss_pred CCcEEEECCCCCCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeecccC
Q 001757 174 KPSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1017)
Q Consensus 174 k~~f~i~~pPPy~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D 222 (1017)
+++|++.+| --||| .|||||.... ..+..+++..|..+....+ |
T Consensus 71 ~~~~~vYtG-~~PSg~~lHlGHlv~~---~~~~~lQ~~~~~~~~I~ia-D 115 (383)
T PLN02486 71 GEKFYLYTG-RGPSSEALHLGHLIPF---MFTKYLQDAFKVPLVIQLT-D 115 (383)
T ss_pred CCCeEEEeC-CCCCCccccHHHHHHH---HHHHHHHHhCCCeEEEEec-C
Confidence 457888887 46898 5999996543 3344555566766655533 5
No 145
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=75.01 E-value=4.7 Score=48.68 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=60.2
Q ss_pred cccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcccCccccccc-cchhhHHHHhh-cCCC
Q 001757 657 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING-ISLEGLHKRLE-EGNL 734 (1017)
Q Consensus 657 dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g-~~l~~l~~~l~-~~nl 734 (1017)
+-.+-|.|++- ...+.+.+.-+|....| ++.-++++++.+|+||||..| .++..++++. +.-+.+...+. -|..
T Consensus 209 thvIrG~d~~~-~t~~q~~l~~alG~~~p--~~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG~s 284 (476)
T PRK01406 209 THVIRGEDHLS-NTPKQILLYEALGWEVP--VFAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLGWS 284 (476)
T ss_pred CEEEECchhhc-CHHHHHHHHHHhCCCCC--eEEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 44446777543 33444444444443444 455568888999999999999 6666666652 23333333332 1211
Q ss_pred -ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCCCccccccHHHHHH
Q 001757 735 -DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1017)
Q Consensus 735 -~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~ 785 (1017)
+..|+ .--.+++|++.+...+ ..++.||++.+.-
T Consensus 285 ~~~~e~----------------~~~~~~i~~f~l~~~~-~s~~~fd~~kL~~ 319 (476)
T PRK01406 285 HGDQEI----------------FSLEELIELFDLERVS-KSPARFDIKKLDW 319 (476)
T ss_pred CCcccc----------------CCHHHHHHhcChhhCC-CCCccccHHHHHH
Confidence 11110 1123788887665443 3578898887754
No 146
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=68.57 E-value=12 Score=45.58 Aligned_cols=51 Identities=31% Similarity=0.416 Sum_probs=34.2
Q ss_pred cccceeecccchHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCcc
Q 001757 657 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1017)
Q Consensus 657 dl~~~G~Dil~fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNv 710 (1017)
+-.+-|.|++ ....+.+.+.-+|.-..| ....+++|++.+|+||||+.|.+
T Consensus 198 thVIRG~d~~-~~t~~q~~l~~aLG~~~p--~~~H~plv~~~~g~KLSKR~g~~ 248 (513)
T PRK14895 198 THIIRGDDHL-TNAARQLAIYQAFGYAVP--SMTHIPLIHGADGAKLSKRHGAL 248 (513)
T ss_pred CEEEECchHh-hhHHHHHHHHHHcCCCCC--eEEEEEeEEcCCCCccccccCch
Confidence 3344577754 344455555455543444 67777999999999999999875
No 147
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=68.05 E-value=4.6 Score=45.03 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=27.0
Q ss_pred CCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCcc
Q 001757 185 NVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA 224 (1017)
Q Consensus 185 y~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~ 224 (1017)
-||| .|||||.+. + -.+.|++++ |++|.+..|=.|+
T Consensus 8 ~PTg~~lHLG~~~~-~--~~~~~lq~~-g~~~~ilI~D~~a 44 (269)
T cd00805 8 DPTAPSLHLGHLVP-L--MKLRDFQQA-GHEVIVLIGDATA 44 (269)
T ss_pred CCCCCcccHHHHHH-H--HHHHHHHHC-CCeEEEEECCCee
Confidence 3699 899999875 2 267777775 9998887775543
No 148
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=68.04 E-value=4.8 Score=50.42 Aligned_cols=58 Identities=26% Similarity=0.155 Sum_probs=35.9
Q ss_pred CCccccceeeccc-chHHHHHHHHHhhhcCCCCceEE-EEcceeeCCCC--ccccccC-CcccCccc
Q 001757 654 YPTSVLETGHDIL-FFWVARMVMLGIKLGGEVPFTKV-YLHPMIRDAHG--RKMSKSL-GNVIDPLE 715 (1017)
Q Consensus 654 ~P~dl~~~G~Dil-~fW~a~~~~~~~~l~~~~Pfk~V-~~Hg~v~D~~G--~KMSKSl-GNvIdP~d 715 (1017)
|.+|+...|.||. ++=++|-+.-.+ |..| +.+ +.|.++.+.+| .|||||. +|.|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~~---g~~~-kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDLI---GRKL-KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHh---CCCC-CceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 4567777899995 344455544322 3222 223 45677766653 6999999 68887655
No 149
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.41 E-value=64 Score=38.86 Aligned_cols=192 Identities=12% Similarity=0.096 Sum_probs=99.4
Q ss_pred CCceEEEEcceeeCCCCccccccCCcccCccccccccchhhHHHHh---hc---CCCChHHHHHHHhccCCCCCCCCCCC
Q 001757 684 VPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL---EE---GNLDPKELEVAKKGQKADFPNGIPEC 757 (1017)
Q Consensus 684 ~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g~~l~~l~~~l---~~---~nl~~~e~~~a~~~~~~~~p~~i~~~ 757 (1017)
.|+.+ ++-|+| +=||.-+|+++-..|+++..... +++.. ++ -+.+|+++.. ..
T Consensus 355 ~~~qH-V~~G~v-----~GmsTRkG~~~fl~dil~e~re~-m~e~M~s~~t~~~~~~~~~~vad--------------~l 413 (567)
T KOG1195|consen 355 KKLQH-VNFGRV-----QGMSTRKGKVVFLDDILEEAREQ-MLEVMASNKTKPVQMANPDEVAD--------------RL 413 (567)
T ss_pred hhcce-eccccc-----ccccccCCceeeHHHHHHHHHHH-HHHHHHhccCCCCCCCCHHHHHH--------------HH
Confidence 35433 344555 47999999999999999842211 11111 11 1234444433 46
Q ss_pred CchHHHHHHHhccCCCccccccHHHHHHHHHH--HHHHHHHHH--HHHhhhCCCCCCCC--CCCCCCCChh-hHHHHHHH
Q 001757 758 GTDALRFALVSYTAQSDKINLDIQRVVGYRQW--CNKLWNAVR--FSMSKLGEGFVPPL--KLHPHNLPFS-CKWILSVL 830 (1017)
Q Consensus 758 GaDaLR~~L~~~~~~~~Dinf~~~~v~~~r~f--~nkl~N~~r--f~l~~l~~~~~p~~--~~~~~~~~~~-Drwil~~L 830 (1017)
|+-|+.+-..-. .-..+..|+++++-....= .--.++-.| =+..+..+ +.+.. ......+..- -.-++..|
T Consensus 414 g~sAviv~d~k~-rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~-~~~~~l~~~d~~~l~ep~~~~Lv~~L 491 (567)
T KOG1195|consen 414 GLSAVIVQDFKG-RRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSD-VTLDDLDEIDFSLLTEPDALLLVRLL 491 (567)
T ss_pred hhHHHHHHHHHH-HhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccc-cCchhhhccchhhcCChhHHHHHHHH
Confidence 777777665432 2335778888876421100 000111111 11222221 21211 1111111111 23367788
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 001757 831 NKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLL 902 (1017)
Q Consensus 831 ~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL 902 (1017)
..+.+.+..+++.++-+..+..+++.. ..++..|=. -|..+...+..-.|.........+|..++++|
T Consensus 492 ~~fp~vve~s~e~lE~~~lV~YL~~La-~a~s~~yk~---l~V~d~~~eia~aRL~Lf~AvRqVL~ngm~lL 559 (567)
T KOG1195|consen 492 LQFPEVVEKSMEQLEPCTLVTYLFKLA-HAVSSAYKI---LWVKDSPMEIALARLLLFSAVRQVLNNGMRLL 559 (567)
T ss_pred hhhHHHHHHHHHhhcchhHHHHHHHHH-HHHHhHHhh---eeecCCcHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 888999999999999999999988875 666666621 12222222222234444444555666667766
No 150
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=66.90 E-value=28 Score=33.23 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 001757 820 PFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGL 899 (1017)
Q Consensus 820 ~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l 899 (1017)
...++-++..+..+...+..+++.++++.+++.++++. ..++.+| +.. +.+..+++.....|.........++..++
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy-~~~-~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l 108 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY-DNV-RILDEDEEIRKNNRLALLKAVRQVLKNGL 108 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH-HHS--STTSTTCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH-hhc-cccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999999985 6776666 433 33333333100245555555566666666
Q ss_pred HHhh
Q 001757 900 RLLH 903 (1017)
Q Consensus 900 ~LL~ 903 (1017)
.||.
T Consensus 109 ~llg 112 (119)
T PF05746_consen 109 DLLG 112 (119)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6664
No 151
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=65.76 E-value=16 Score=43.53 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.4
Q ss_pred EEEEcceeeCCCCccccccCCc
Q 001757 688 KVYLHPMIRDAHGRKMSKSLGN 709 (1017)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlGN 709 (1017)
...-++++++.+|+||||+.|.
T Consensus 221 ~f~Hlpli~~~~g~KLSKR~~~ 242 (433)
T PRK12410 221 TYAHLPIILNEEGKKMSKRDNA 242 (433)
T ss_pred eEEEeeeeeCCCCCeeecccCh
Confidence 4455589999999999999984
No 152
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=62.09 E-value=7.2 Score=39.47 Aligned_cols=23 Identities=35% Similarity=0.842 Sum_probs=19.6
Q ss_pred HHHHHHhCCCeeeeecccCccCh
Q 001757 204 IIRWRRMSGYNALWVPGMDHAGI 226 (1017)
Q Consensus 204 i~Ry~rm~G~~Vl~~pG~D~~Gl 226 (1017)
++||.|+.||+|.+..+.+..-+
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~i 34 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDEI 34 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHHH
Confidence 69999999999999998766544
No 153
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=61.98 E-value=25 Score=42.92 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=50.0
Q ss_pred EEcceeeCCCCccccccCCcccCccccccc------cchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHH
Q 001757 690 YLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALR 763 (1017)
Q Consensus 690 ~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR 763 (1017)
+.|-..++..|.||||++..-.-=.-.++| -|+.+|+.+ .|-++|+|
T Consensus 234 ~~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrr---------------------------G~~peAi~ 286 (523)
T PLN03233 234 IHAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRR---------------------------GIDIDALK 286 (523)
T ss_pred eeeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHC---------------------------CCCHHHHH
Confidence 467777889999999997322100011111 123344433 57799999
Q ss_pred HHHHhccCCCccccccHHHHHH-HHHHHHHH
Q 001757 764 FALVSYTAQSDKINLDIQRVVG-YRQWCNKL 793 (1017)
Q Consensus 764 ~~L~~~~~~~~Dinf~~~~v~~-~r~f~nkl 793 (1017)
=|++..+....|..++++.+.. .|+.++..
T Consensus 287 ~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~ 317 (523)
T PLN03233 287 MFMCSQGASRRVVNLDWAKFWAENKKEIDKR 317 (523)
T ss_pred HHHHHhCCCCCCceecHHHHHHHHHHHhccc
Confidence 9999888877899999998875 34455543
No 154
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=60.47 E-value=27 Score=38.41 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=22.2
Q ss_pred CCCchHHHHHHHhccCCCccccccHHHHHH
Q 001757 756 ECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1017)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~ 785 (1017)
.+-+++++-++...+-...+..++++.+..
T Consensus 199 G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~ 228 (240)
T cd09287 199 GIRPEAIRDFIIEVGVKQTDATISWENLYA 228 (240)
T ss_pred CCCHHHHHHHHHHhCCCCCCCccCHHHHHH
Confidence 466889998887776666677888777654
No 155
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=55.61 E-value=32 Score=41.21 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=23.5
Q ss_pred HHHhhhcCCCCceEEEEcceeeCCCCccccccCCc
Q 001757 675 MLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN 709 (1017)
Q Consensus 675 ~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGN 709 (1017)
++--+|.-..| ...-++++++.+|+||||+.|.
T Consensus 215 ~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~ 247 (445)
T PRK12558 215 QIFEALGAKPP--VFAHLSLLTGADGKGLSKRLGG 247 (445)
T ss_pred HHHHHhCCCCC--eEEEcccccCCCcccccccCCC
Confidence 33334433456 5566699999999999999875
No 156
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=54.56 E-value=10 Score=44.37 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=26.7
Q ss_pred EEEECCCCCCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeecc
Q 001757 177 FVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1017)
Q Consensus 177 f~i~~pPPy~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG 220 (1017)
+.+..| --||| .|||||... --.+.|+++ .|++|.+..|
T Consensus 31 ~~vy~G-~dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 31 IKLYVG-FDPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CEEEEe-eCCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEe
Confidence 444554 24699 899999774 223556665 6999988775
No 157
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=54.02 E-value=11 Score=43.35 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=27.0
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCc
Q 001757 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1017)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1017)
++.+.+| =-|||.+||||.. .+.. +.++++. |+++.+..|=.|
T Consensus 30 ~~~v~~G-~~PTG~lHLG~~~-~~~~--~~~lq~~-g~~~~i~IaD~h 72 (329)
T PRK08560 30 EPKAYIG-FEPSGKIHLGHLL-TMNK--LADLQKA-GFKVTVLLADWH 72 (329)
T ss_pred CCEEEEc-cCCCCcchhhhhH-HHHH--HHHHHHC-CCeEEEEEccch
Confidence 4445554 3568999999965 2332 6666663 887766655443
No 158
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=53.66 E-value=28 Score=41.36 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=29.4
Q ss_pred CcEEEECCCCCCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCcc
Q 001757 175 PSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA 224 (1017)
Q Consensus 175 ~~f~i~~pPPy~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~ 224 (1017)
+++.+..| --||| +|||||+.. + -.+.+++ ..|+++.+..|=-|+
T Consensus 32 ~~~~iy~G-~dPT~~sLHlGhlv~-l--~~l~~lq-~~G~~~~~ligd~ta 77 (410)
T PRK13354 32 KPLTLYLG-FDPTAPSLHIGHLVP-L--MKLKRFQ-DAGHRPVILIGGFTG 77 (410)
T ss_pred CCcEEEEc-ccCCCCCcchhhHHH-H--HHHHHHH-HcCCeEEEEEccccc
Confidence 45666665 35798 599999554 2 2244444 579999888876553
No 159
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=52.02 E-value=10 Score=42.66 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCc
Q 001757 185 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1017)
Q Consensus 185 y~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1017)
-|||.|||||.++.+.. +.+.+.. |+++.+..+=+|
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~a-g~~~~~~IaD~h 42 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQEA-GYELFFFIADLH 42 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHhC-CCCEEEEecchH
Confidence 36999999998884432 3333333 888877766443
No 160
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=50.73 E-value=40 Score=41.60 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=51.0
Q ss_pred EEEEcceeeCCCCccccccCC-cccCccccccc------cchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCch
Q 001757 688 KVYLHPMIRDAHGRKMSKSLG-NVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD 760 (1017)
Q Consensus 688 ~V~~Hg~v~D~~G~KMSKSlG-NvIdP~dvi~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaD 760 (1017)
.+..++++++..|+|+||+.. ..+.- -.+.| .++.+|+.. .+-++
T Consensus 315 ~~~h~~~l~~~~~~kLskk~k~~~l~~-g~~~gWdDPr~~ti~~lrrr---------------------------G~~pe 366 (560)
T TIGR00463 315 EFIHWGRLKINDVRTLSTSSKLKGIVR-GDYSGWDDPRLPTLRAVRRR---------------------------GITPE 366 (560)
T ss_pred eEEEEcceecCCCcEecchhhhhhhhc-cCccCcCCccHHHHHHHHHC---------------------------CCCHH
Confidence 788889999999999998873 11110 01111 123333332 46689
Q ss_pred HHHHHHHhccCCCccccccHHHHHHH-HHHHHH
Q 001757 761 ALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1017)
Q Consensus 761 aLR~~L~~~~~~~~Dinf~~~~v~~~-r~f~nk 792 (1017)
|||=|++..+....|..++++.+... |+.++.
T Consensus 367 Ai~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~ 399 (560)
T TIGR00463 367 AIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDP 399 (560)
T ss_pred HHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCc
Confidence 99999998887778999999888653 444443
No 161
>PLN02886 aminoacyl-tRNA ligase
Probab=48.82 E-value=17 Score=42.73 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=31.7
Q ss_pred CCccccceeeccc-chHHHHHHHHHhhh-cC---------------CCCceEEEE--cceeeCCC-C-ccccccCC---c
Q 001757 654 YPTSVLETGHDIL-FFWVARMVMLGIKL-GG---------------EVPFTKVYL--HPMIRDAH-G-RKMSKSLG---N 709 (1017)
Q Consensus 654 ~P~dl~~~G~Dil-~fW~a~~~~~~~~l-~~---------------~~Pfk~V~~--Hg~v~D~~-G-~KMSKSlG---N 709 (1017)
|-+++...|.||. +.=++|-++-...- .| .+| ..++. +..|.+.. | .|||||.. |
T Consensus 183 ~~a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P-~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s 261 (389)
T PLN02886 183 YQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVP-EALIPPAGARVMSLTDGTSKMSKSAPSDQS 261 (389)
T ss_pred cCCCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCC-eeccCcccceeeeCCCCCCcCCCCCCCCCC
Confidence 4567777899996 34445555433211 11 123 22331 23454443 3 69999995 4
Q ss_pred ccCcc
Q 001757 710 VIDPL 714 (1017)
Q Consensus 710 vIdP~ 714 (1017)
.|...
T Consensus 262 ~I~L~ 266 (389)
T PLN02886 262 RINLL 266 (389)
T ss_pred eEEec
Confidence 66543
No 162
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=47.27 E-value=36 Score=40.55 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=53.8
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Q 001757 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGG 265 (1017)
Q Consensus 186 ~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~ 265 (1017)
|||.|||||.++.+-. .++.+...|+++.|... |-|-+-. . ...++..+ . .-
T Consensus 11 PTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT~---------------~--~dp~~lr~----~----~~ 62 (431)
T PRK12284 11 TTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALIK---------------C--DDPARIQR----S----TL 62 (431)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhccC---------------C--CCHHHHHH----H----HH
Confidence 7999999997765432 33344445888765443 3333310 0 11222222 2 22
Q ss_pred HHHHHHHHhccccccCCccccCC-hhhHHHHHHHHHHHhhCCcEEEc
Q 001757 266 TILRQQRRLGASLDWSRECFTMD-EKRSKAVTEAFVRLYKEGLIYRD 311 (1017)
Q Consensus 266 ~i~~ql~rlG~s~DW~r~~~T~d-~~y~~~v~~~F~~L~ekGlIYr~ 311 (1017)
.+...+...|+..+=...|+-.| |.+ .-..|++..+--.|.+-|-
T Consensus 63 e~aa~~LA~GlDPek~~if~QSdvpeh-~EL~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 63 EIAATWLAAGLDPERVTFYRQSDIPEI-PELTWLLTCVAGKGLLNRA 108 (431)
T ss_pred HHHHHHHHhCCCccceEEEECCcchhH-HHHHHHHHhhhhHHHHHhh
Confidence 34566777887666334455555 444 4557788877777776654
No 163
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=46.75 E-value=17 Score=43.21 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=27.4
Q ss_pred cEEEECCCCCCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeeccc
Q 001757 176 SFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1017)
Q Consensus 176 ~f~i~~pPPy~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1017)
++.+..| --||| +|||||.+. -..+.++++ .|+++.+..|=
T Consensus 33 ~~~vy~G-~dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~ligd 74 (408)
T PRK05912 33 PLRIYLG-FDPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIGG 74 (408)
T ss_pred CCEEEEe-ecCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEcC
Confidence 4555555 35699 599999874 245555555 68888877763
No 164
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=46.67 E-value=16 Score=41.10 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=27.4
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCc
Q 001757 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1017)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1017)
++.+.+|. -|||.|||||.... ..+.+.++ .|++|.+..|=+|
T Consensus 5 ~~~~y~G~-~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~iaD~~ 47 (292)
T PF00579_consen 5 PFRVYTGI-DPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIADLH 47 (292)
T ss_dssp SEEEEEEE-ESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEEHHH
T ss_pred CcEEEEeE-CCCCcccchHHHHH---HHHHHHHh-cCCccceEecchh
Confidence 44455442 46999999987754 23444444 8999988887444
No 165
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.45 E-value=31 Score=40.78 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=22.9
Q ss_pred CCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeeccc
Q 001757 186 VTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1017)
Q Consensus 186 ~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1017)
||| +|||||..... .+.|+ ...|++|....|-
T Consensus 41 PTa~slHlGhlv~l~---kL~~f-Q~aGh~~ivLigd 73 (401)
T COG0162 41 PTAPSLHLGHLVPLM---KLRRF-QDAGHKPIVLIGD 73 (401)
T ss_pred CCCCccchhhHHHHH---HHHHH-HHCCCeEEEEecc
Confidence 499 89999976532 23334 4579999998873
No 166
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=44.99 E-value=59 Score=40.34 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=27.7
Q ss_pred CCCchHHHHHHHhccCCCccccccHHHHHHH-HHHHHH
Q 001757 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1017)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~-r~f~nk 792 (1017)
.+-++++|=++...+....+..||++.+... |+.++.
T Consensus 321 G~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~ 358 (601)
T PTZ00402 321 GLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDP 358 (601)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhh
Confidence 4678999998887777777999999988753 334443
No 167
>PLN02859 glutamine-tRNA ligase
Probab=42.52 E-value=58 Score=41.58 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=46.3
Q ss_pred EEEcceeeCCCCccccccCCcccCccccccc------cchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHH
Q 001757 689 VYLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDAL 762 (1017)
Q Consensus 689 V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaL 762 (1017)
.+.|=-.++.+|.||||+++...-=.-+++| .|+.+|+.+ .|-++|+
T Consensus 486 ~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrr---------------------------G~~PeAi 538 (788)
T PLN02859 486 YVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRR---------------------------GVTPTAI 538 (788)
T ss_pred cEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHC---------------------------CCCHHHH
Confidence 3444337789999999999875422233333 345555544 5779999
Q ss_pred HHHHHhccCCCccc-cccHHHHHH
Q 001757 763 RFALVSYTAQSDKI-NLDIQRVVG 785 (1017)
Q Consensus 763 R~~L~~~~~~~~Di-nf~~~~v~~ 785 (1017)
|=|++..+....+. .++++.++.
T Consensus 539 ~nFi~~lG~s~~~~e~i~~~~Le~ 562 (788)
T PLN02859 539 NAFCRGIGITRSDNSLIRMDRLEH 562 (788)
T ss_pred HHHHHHhCCCCCCCceecHHHHHh
Confidence 99988776555565 688887754
No 168
>PLN02886 aminoacyl-tRNA ligase
Probab=41.21 E-value=28 Score=40.93 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=48.7
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Q 001757 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGG 265 (1017)
Q Consensus 186 ~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~ 265 (1017)
|||.+||||.++.+ .-+++++. |+++.+..- |-|-+- .+. ..+++.+ +..
T Consensus 55 PSG~lHLGnylGai--~~~v~lQ~--~~~~~~~IA-DlHAlt---------------~~~--~~~~lr~--------~~~ 104 (389)
T PLN02886 55 PTGSIHLGNYLGAI--KNWVALQE--TYDTFFCVV-DLHAIT---------------LPH--DPRELGK--------ATR 104 (389)
T ss_pred CCCccHHHHHHHHH--HHHHHHhc--cCCEEEEEe-cHHHhh---------------CCC--CHHHHHH--------HHH
Confidence 58999999977654 23334443 777654433 333221 011 2222222 223
Q ss_pred HHHHHHHHhccccccCCccccCC-hhhHHHHHHHHHHHhhCCcEEE
Q 001757 266 TILRQQRRLGASLDWSRECFTMD-EKRSKAVTEAFVRLYKEGLIYR 310 (1017)
Q Consensus 266 ~i~~ql~rlG~s~DW~r~~~T~d-~~y~~~v~~~F~~L~ekGlIYr 310 (1017)
.+...+..+|+..+=...|+-.| +.+ ....|++..+..-|.+.|
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~-~eL~wil~~~t~~g~L~R 149 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAH-AELMWLLSCSTPIGWLNK 149 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchh-HHHHHHHHhhCcHHHHHh
Confidence 45667888898776444444444 444 334566666544444443
No 169
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=40.26 E-value=1.1e+02 Score=33.67 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCccChhHHHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHH
Q 001757 184 PNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEY 263 (1017)
Q Consensus 184 Py~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glpiq~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~ 263 (1017)
++.+|.+++.+-.. -+.. +.+..+-.|-+|+...|-...+-... .+. + .-.|++|++.+.++..+|
T Consensus 33 i~~~G~l~~~~~~~-~~~~-~~~~~~~~~~kvl~sigg~~~~~~~~-~~~---------~--~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 33 PDANGTLNANPVRS-ELNS-VVNAAHAHNVKILISLAGGSPPEFTA-ALN---------D--PAKRKALVDKIINYVVSY 98 (253)
T ss_pred ECCCCeEEecCcHH-HHHH-HHHHHHhCCCEEEEEEcCCCCCcchh-hhc---------C--HHHHHHHHHHHHHHHHHh
Confidence 45688888864211 1222 23344457888887665433331111 111 1 112456665554443322
Q ss_pred HHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHhhCCcE
Q 001757 264 GGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLI 308 (1017)
Q Consensus 264 ~~~i~~ql~rlG~s~DW~r~~~T~d~~y~~~v~~~F~~L~ekGlI 308 (1017)
.-=|+.+||+.+..+ ...|..++.++-..|.+.|++
T Consensus 99 --------~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 99 --------NLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred --------CCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 113789999876543 467888888888888777754
No 170
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.67 E-value=30 Score=38.60 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHH----HHHHHH
Q 001757 173 SKPSFVIVLPPPNVTGALHIGHALT----TAIQDT 203 (1017)
Q Consensus 173 ~k~~f~i~~pPPy~nG~LHiGHal~----~~i~Di 203 (1017)
.+++|++.+|-=--+|.+|+||... +-+||+
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPFiftKwlQe~ 116 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPFIFTKWLQDV 116 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhHHHHHHHHHH
Confidence 4567999998777899999999654 445555
No 171
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=39.57 E-value=93 Score=38.34 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=27.3
Q ss_pred CCCchHHHHHHHhccCCCccccccHHHHHHH-HHHHH
Q 001757 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCN 791 (1017)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~v~~~-r~f~n 791 (1017)
.|-++|||=|++..+....+..++++.+... |+.++
T Consensus 303 G~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~nRk~ld 339 (554)
T PRK05347 303 GYTPESIREFCERIGVTKQDSVIDMSMLESCIREDLN 339 (554)
T ss_pred CCCHHHHHHHHHHhCCCCCCCeecHHHHHHHHHHHhc
Confidence 5779999999988887777888998887653 33433
No 172
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=39.33 E-value=19 Score=41.47 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecc
Q 001757 185 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1017)
Q Consensus 185 y~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG 220 (1017)
-|||.|||||.++.+.+ +.+++. +++|.+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia 40 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA 40 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe
Confidence 36999999998866533 445554 366666554
No 173
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=39.17 E-value=30 Score=39.25 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=22.0
Q ss_pred hhcCCCCceEEEEcceeeCCCCccccccCCcc
Q 001757 679 KLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1017)
Q Consensus 679 ~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNv 710 (1017)
+|.-..| ...-|++++|.+|+||||+.|..
T Consensus 215 aLg~~~P--~y~H~pll~~~~g~kLSKr~~~~ 244 (299)
T PRK05710 215 LLGLPTP--RYLHLPLVLNADGQKLSKQNGAP 244 (299)
T ss_pred HcCCCCC--eEEEeecccCCCCCcccccCCcc
Confidence 3334456 45555899999999999998764
No 174
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=38.92 E-value=59 Score=39.79 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=43.5
Q ss_pred CCceEEEEcceeeCCCCccccccCCcccCccccccc------cchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCC
Q 001757 684 VPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPEC 757 (1017)
Q Consensus 684 ~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dvi~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~ 757 (1017)
.|..--|.| ++.+|.||||+++...-=.-+++| .|+.+|+.+ .|
T Consensus 226 ~P~~~~F~r---ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrr---------------------------G~ 275 (522)
T TIGR00440 226 RPAQYEFSR---LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRR---------------------------GY 275 (522)
T ss_pred CCceEEEEE---ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHC---------------------------CC
Confidence 364445555 578999999999764211122222 134444443 57
Q ss_pred CchHHHHHHHhccCCCccccccHHHHHH
Q 001757 758 GTDALRFALVSYTAQSDKINLDIQRVVG 785 (1017)
Q Consensus 758 GaDaLR~~L~~~~~~~~Dinf~~~~v~~ 785 (1017)
-++|||=|++..+....+...++..+..
T Consensus 276 ~PeAi~nfl~~lG~s~~~~~~e~~~l~~ 303 (522)
T TIGR00440 276 TPASIREFCNRIGVTKQDNNIEVVRLES 303 (522)
T ss_pred CHHHHHHHHHHhCCCCCCCceehhhHHH
Confidence 7999999988776544454456655544
No 175
>PLN02381 valyl-tRNA synthetase
Probab=38.28 E-value=53 Score=43.87 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=11.7
Q ss_pred CCCCCCCCcchhHHHHH
Q 001757 184 PNVTGALHIGHALTTAI 200 (1017)
Q Consensus 184 Py~nG~LHiGHal~~~i 200 (1017)
.++.|-=|-|-+-...+
T Consensus 169 l~~~G~D~~Glp~e~~v 185 (1066)
T PLN02381 169 LWVPGVDHAGIATQVVV 185 (1066)
T ss_pred cccCCCCCCcChHHHHH
Confidence 56678877788765544
No 176
>PLN02627 glutamyl-tRNA synthetase
Probab=37.46 E-value=96 Score=38.09 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHHhhhcCCCCceEEEEcceeeCCCCccccccCCcc
Q 001757 675 MLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1017)
Q Consensus 675 ~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNv 710 (1017)
.+--+|.-..| ...-+++|++.+|+||||..|.+
T Consensus 268 ~ly~aLg~~~P--~f~Hlpli~~~~g~KLSKR~~~~ 301 (535)
T PLN02627 268 LIYKALGFPMP--RFAHVSLILAPDRSKLSKRHGAT 301 (535)
T ss_pred HHHHHcCCCCC--eEEEccceeCCCCCccccccCCc
Confidence 33334444556 56667999999999999998653
No 177
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=37.41 E-value=20 Score=41.24 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=26.8
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCc
Q 001757 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1017)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1017)
.+.+| =-|||.|||||.++.+.. ++....|+++.+..+=.|
T Consensus 4 ~v~~G-~~PTG~~HlG~~l~~~~~----~~~~q~~~~~~i~IaD~h 44 (328)
T TIGR00233 4 RVLTG-IQPSGKMHLGHYLGAIQT----KWLQQFGVELFICIADLH 44 (328)
T ss_pred EEEEe-eCCCcHhHHHHHHHHHHH----HHHHhCCCCEEEEeecch
Confidence 34444 357999999998875543 233356888877766555
No 178
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=36.72 E-value=2.7e+02 Score=26.58 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=50.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 001757 820 PFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGL 899 (1017)
Q Consensus 820 ~~~Drwil~~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l 899 (1017)
...++-++..+..+.+.+..++.+.+++.++..++++. ..+.++ ++.. ..+..++.+....|......+..++..++
T Consensus 35 ~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~f-y~~v-~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~ 111 (122)
T smart00836 35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLA-SAFHSF-YNKC-RVLGEENPELRAARLALLKAVRQVLANGL 111 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHH-HccC-cccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888888999999999999999984 455444 4543 22222222212234444445555566666
Q ss_pred HHhh
Q 001757 900 RLLH 903 (1017)
Q Consensus 900 ~LL~ 903 (1017)
++|.
T Consensus 112 ~llg 115 (122)
T smart00836 112 RLLG 115 (122)
T ss_pred HHcC
Confidence 6664
No 179
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=36.71 E-value=32 Score=35.47 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=12.4
Q ss_pred CCeeeeeccccceeecchHHHHHHHh
Q 001757 507 NDVVEPMIKPQWYVNCNSMAMEALYA 532 (1017)
Q Consensus 507 ~~~i~~~~~~QWFi~~~~l~~~al~~ 532 (1017)
|.-++++++||||.+-. +...+...
T Consensus 24 ~KK~V~iiSPQWF~k~G-~~~~aF~~ 48 (163)
T PF04918_consen 24 NKKAVFIISPQWFTKKG-VDPDAFQS 48 (163)
T ss_dssp T-EEEEE--GGG--TT--S-HHHHHH
T ss_pred CCcEEEEECCcccCCCC-cCHHHHHH
Confidence 67789999999999743 44444443
No 180
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=32.61 E-value=40 Score=37.80 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=21.9
Q ss_pred hhcCCCCceEEEEcceeeCCCCccccccCCcc
Q 001757 679 KLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1017)
Q Consensus 679 ~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNv 710 (1017)
+|.-..| ...-|+++++.+|+|+||+.|-.
T Consensus 208 aLg~~~P--~y~H~pll~~~~g~kLSKR~~~~ 237 (272)
T TIGR03838 208 LLGLPPP--RYLHLPLVVNADGEKLSKQNGAP 237 (272)
T ss_pred HhCCCCC--eEEechhhhCCCCCeeeccCCcc
Confidence 3333456 45556899999999999998753
No 181
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=32.56 E-value=36 Score=39.25 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecccCc
Q 001757 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1017)
Q Consensus 186 ~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1017)
|||.|||||.++.+.. .++.+.-.|.++.+...=.|
T Consensus 12 PTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IADlH 47 (332)
T PRK12556 12 PTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIADYH 47 (332)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEechh
Confidence 5899999997764432 22233334665655544333
No 182
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=31.49 E-value=60 Score=40.03 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=49.7
Q ss_pred eCCCCccccccCCcccCccccccc------cchhhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhc
Q 001757 696 RDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSY 769 (1017)
Q Consensus 696 ~D~~G~KMSKSlGNvIdP~dvi~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~p~~i~~~GaDaLR~~L~~~ 769 (1017)
++.+|.||||+++...-=.-+++| .|+.+|+.+ .|-++|||=|++..
T Consensus 280 ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrr---------------------------G~~peAi~~f~~~~ 332 (574)
T PTZ00437 280 LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRR---------------------------GYTPAAINRFCELV 332 (574)
T ss_pred ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHC---------------------------CCCHHHHHHHHHHh
Confidence 578999999999875322233333 234444444 57799999999888
Q ss_pred cCCCccccccHHHHHH-HHHHHHHHH
Q 001757 770 TAQSDKINLDIQRVVG-YRQWCNKLW 794 (1017)
Q Consensus 770 ~~~~~Dinf~~~~v~~-~r~f~nkl~ 794 (1017)
+....|..++++.+.+ .|+.+++..
T Consensus 333 G~sk~~~~i~~~~Le~~nR~~ld~~a 358 (574)
T PTZ00437 333 GITRSMNVIQISMLENTLREDLDERC 358 (574)
T ss_pred CCCccceEeeHHHHHHHHHHHhcccC
Confidence 7777788999998876 355555543
No 183
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=31.45 E-value=72 Score=38.60 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=21.5
Q ss_pred hhcCCCCceEEEEcceeeCCCCccccccCC
Q 001757 679 KLGGEVPFTKVYLHPMIRDAHGRKMSKSLG 708 (1017)
Q Consensus 679 ~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlG 708 (1017)
++.-..| ..+-++++++.+|+|||||.|
T Consensus 229 ~lg~~~P--~~~H~~li~~~~g~kLSKr~~ 256 (472)
T COG0008 229 ALGWPPP--VYAHLPLLLNEDGKKLSKRKG 256 (472)
T ss_pred HcCCCCC--cEEEeeeeecCCCCeecCccC
Confidence 3333445 566679999999999999999
No 184
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=28.89 E-value=75 Score=33.74 Aligned_cols=55 Identities=13% Similarity=-0.043 Sum_probs=30.7
Q ss_pred eeeeeCCCCccccC-CCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCeee
Q 001757 450 FINIFTDDGKINSN-GGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVE 511 (1017)
Q Consensus 450 ~i~iid~~G~~~e~-~g~~f~G~~~~~ar~~Vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~ 511 (1017)
..-+||.+|++... .++.-.|.+..+ +++.|++. ...+.+...-|..|+-|+.++
T Consensus 119 ~~fiID~~G~I~~~~~~~~~~gr~~~e----ll~~l~~l---q~~~~~~~~~p~~w~~g~~~~ 174 (203)
T cd03016 119 AVFIIDPDKKIRLILYYPATTGRNFDE----ILRVVDAL---QLTDKHKVATPANWKPGDDVI 174 (203)
T ss_pred EEEEECCCCeEEEEEecCCCCCCCHHH----HHHHHHHH---hhHhhcCcCcCCCCCCCCcee
Confidence 35689999987532 121223554333 44444432 223344556699999987654
No 185
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=27.97 E-value=54 Score=38.63 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=22.4
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecc
Q 001757 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1017)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG 220 (1017)
++.+..| -=|||.|||||..-.. --+.+++ -.|++|.+..|
T Consensus 66 ~~~v~~G-~~PTG~lHLG~g~i~~--~~~~~lq-~~G~~v~~~Ia 106 (383)
T PTZ00126 66 RPICYDG-FEPSGRMHIAQGILKA--INVNKLT-KAGCVFVFWVA 106 (383)
T ss_pred CCEEEEE-ECCCCcccccchHhHh--HHHHHHH-hCCCeEEEEEc
Confidence 3444444 2359999999932111 1222233 23888877665
No 186
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.51 E-value=50 Score=38.49 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=37.2
Q ss_pred CCccccceeecccchHHHHHHHHHhhhcC--CCCceEEEEcceeeCCCCccccccCCcccCccc
Q 001757 654 YPTSVLETGHDILFFWVARMVMLGIKLGG--EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 715 (1017)
Q Consensus 654 ~P~dl~~~G~Dil~fW~a~~~~~~~~l~~--~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~d 715 (1017)
|-..+.+.|.||.-.--+-.-+.. .+.+ ..+| =++-.++.+..|.|.-||-||.|+.+-
T Consensus 226 ~g~~~QlGGsDQwGNitaG~dlI~-ki~~~~~~vf--GlT~PLlTsstG~KlGKSaGnAvWLdp 286 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNITAGTDLIR-KIMPIQAFVF--GLTFPLLTSSTGAKLGKSAGNAVWLDP 286 (467)
T ss_pred cCeeEEecccccccccchHHHHHH-Hhccccccee--eeeeeeEecCcchhhccCCCceEEecC
Confidence 456688899999643111111111 1111 2233 466778889999999999999998754
No 187
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.35 E-value=36 Score=38.89 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=27.8
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCC-eeeeecccCccCh
Q 001757 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGY-NALWVPGMDHAGI 226 (1017)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~-~Vl~~pG~D~~Gl 226 (1017)
++.+++| =-|||.|||||.++.+. .+|+...++ ++. .+=.|-|.+
T Consensus 5 ~~~vlSG-~~PSG~lHLGny~ga~~----~~v~~q~~~~~~f-~~IaDlha~ 50 (314)
T COG0180 5 KFRVLSG-IQPSGKLHLGNYLGAIR----NWVLLQEEYYECF-FFIADLHAI 50 (314)
T ss_pred CceEEec-CCCCCCcchhHhHHHHH----HHHHHhcccCceE-EEEecHHHh
Confidence 4455555 34699999999887653 455555564 554 444555544
No 188
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=25.67 E-value=65 Score=36.85 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=29.1
Q ss_pred cceeecccc-hHHHHHHHHHhhhcCCCCceEEEEcceeeCCCCccccccCCccc
Q 001757 659 LETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVI 711 (1017)
Q Consensus 659 ~~~G~Dil~-fW~a~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvI 711 (1017)
.+=|.|.+. ...+..+.- +|.-..| ...-|.+++|.+|+|+||+.|-.-
T Consensus 203 ViRG~D~l~~t~~Q~~L~~--~Lg~~~P--~~~H~pl~l~~~g~kLSKR~~~~~ 252 (314)
T PF00749_consen 203 VIRGEDLLSSTPRQILLYE--ALGWPPP--PYAHLPLILNEDGKKLSKRKGAKS 252 (314)
T ss_dssp EEEEGGGTTCHHHHHHHHH--HCTSSS---EEEEEEEEEETTSSBSSTTCSHHB
T ss_pred EEEccccccccHHHHHHHH--HhCCCCc--ceEeeeeeecCCCcEechhhcccc
Confidence 344666553 233433333 3322334 345558889999999999998664
No 189
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=24.73 E-value=49 Score=39.07 Aligned_cols=28 Identities=29% Similarity=0.704 Sum_probs=19.0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHh-CCCeeeee
Q 001757 186 VTGALHIGHALTTAIQDTIIRWRRM-SGYNALWV 218 (1017)
Q Consensus 186 ~nG~LHiGHal~~~i~Dii~Ry~rm-~G~~Vl~~ 218 (1017)
|||.+||||.++.+ + .|..| .|+++.+.
T Consensus 11 PSG~~HLGnylG~i-k----~wv~lq~~~~~~~~ 39 (398)
T PRK12283 11 PTGRLHLGHYHGVL-K----NWVKLQHEYECFFF 39 (398)
T ss_pred CCCcchHHHHHHHH-H----HHHHHhcCCcEEEE
Confidence 69999999988833 3 44443 57766443
No 190
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=22.27 E-value=92 Score=38.21 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=12.2
Q ss_pred hhhhhhhhhhhhhhhHHHhh
Q 001757 14 LSPLLHSAAASVSDAIVSLA 33 (1017)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (1017)
-.|...-||...+...+.|.
T Consensus 370 ~~~~y~raa~~ai~iYl~l~ 389 (517)
T PF12569_consen 370 SHPFYRRAAKGAIRIYLELH 389 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 35666667766666655554
No 191
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=21.00 E-value=47 Score=38.34 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.3
Q ss_pred CCCCCCcchhHHHHH
Q 001757 186 VTGALHIGHALTTAI 200 (1017)
Q Consensus 186 ~nG~LHiGHal~~~i 200 (1017)
|||.+||||.++.+.
T Consensus 11 PTG~~HLGn~l~~~~ 25 (333)
T PRK12282 11 PTGKLHLGHYVGSLK 25 (333)
T ss_pred CCCcchHHHHHHHHH
Confidence 489999999887554
No 192
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=20.67 E-value=4.1e+02 Score=27.61 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=28.3
Q ss_pred HHHHHHHHHh---ccccccCCccccC---ChhhHHHHHHHHHHHhhCCcE
Q 001757 265 GTILRQQRRL---GASLDWSRECFTM---DEKRSKAVTEAFVRLYKEGLI 308 (1017)
Q Consensus 265 ~~i~~ql~rl---G~s~DW~r~~~T~---d~~y~~~v~~~F~~L~ekGlI 308 (1017)
+.+.+.+++. |+.+||+.+...- -..|..++.++=.+|..+|++
T Consensus 94 ~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ 143 (210)
T cd00598 94 NSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYL 143 (210)
T ss_pred HHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcE
Confidence 3344444555 7889998765543 267777777777777765543
Done!