Query 001757
Match_columns 1017
No_of_seqs 372 out of 2685
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 15:47:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001757.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1056-1059//hhsearch_pdb/001757hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 1.0 1 1 1609.6 64.2 766 143-1007 3-771 (862)
2 1ffy_A Isoleucyl-tRNA syntheta 1.0 1 1 1502.4 51.1 791 125-1011 6-862 (917)
3 1ile_A Ilers, isoleucyl-tRNA s 1.0 1 1 1448.2 46.4 743 145-967 6-819 (821)
4 1wz2_A Leucyl-tRNA synthetase; 1.0 1 1 1312.0 53.7 746 145-991 2-874 (967)
5 4arc_A Leucine--tRNA ligase; l 1.0 1 1 1206.3 50.8 650 140-940 18-813 (880)
6 2v0c_A Aminoacyl-tRNA syntheta 1.0 1 1 1197.4 50.2 671 146-966 3-833 (878)
7 1wkb_A Leucyl-tRNA synthetase; 1.0 1 1 1170.6 49.1 682 145-918 2-810 (810)
8 3u1f_A Methionyl-tRNA syntheta 1.0 1 1 796.5 33.2 473 172-920 6-500 (542)
9 1rqg_A Methionyl-tRNA syntheta 1.0 1 1 796.4 37.6 492 175-919 2-521 (722)
10 3h99_A Methionyl-tRNA syntheta 1.0 1 1 752.1 29.1 490 171-919 14-521 (560)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=1.00 E-value=1 Score=1609.60 Aligned_cols=766 Identities=43% Similarity=0.764 Sum_probs=703.1
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 21189973677999999998398645889999928997799987998886246788999999999883799443303568
Q 001757 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1017)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~~G~D 222 (1017)
|++.|+|..+|++||++|++ ++|++..+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||||
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D 81 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEB
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 86689948988999999986-77756767899818997489999898663466888999999999994799502456528
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 64814899999999998068743349588999999999999999999998865633357830259834599999999999
Q 001757 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1017)
Q Consensus 223 ~~Glp~q~~vEk~l~~~~~~~~~~i~~e~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1017)
|||||||.+||+++. .+|++++++||++|++.||+|++++++.|++||++||+|+||+|+|+|||+.|+++|+|+|.+|
T Consensus 82 ~~Glp~e~~vek~l~-~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 160 (862)
T 1gax_A 82 HAGIATQVVVERLLL-KEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRY 160 (862)
T ss_dssp CCTHHHHHHHHTTTT-TTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 777199999999998-7499968839999999999999999999999999828503578982169889999999999999
Q ss_pred HHCCCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCC
Q ss_conf 66795999026442117988313543202335777406720576543100026657432279861399864455423458
Q 001757 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGD 382 (1017)
Q Consensus 303 ~~~GlIYr~~~~V~Wcp~~~TaLSd~EVe~~e~~~~t~~~vp~y~~~~e~g~l~~f~~~l~~~~~~i~v~TTrPeTl~g~ 382 (1017)
+++|+|||+.++|||||.|+|+|||+||+|++.. |.+++++|++.++ .+|+|||||||||+||
T Consensus 161 ~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~----------------g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~ 223 (862)
T 1gax_A 161 YHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTP----------------GKLYTLRYEVEGG-GFIEIATVRPETVFAD 223 (862)
T ss_dssp HTTSSEEEECCEEEEETTTTEEECGGGEEECCEE----------------EEEEEEECCCSSS-CCCEEEESCSGGGTTC
T ss_pred HHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC----------------CEEEEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf 8779888324136637875855565223344556----------------5389999994699-7799995885534513
Q ss_pred CEEEECCCCCCCCCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 27997589711112248766468899831057268523588899830118999955389999809941134179991125
Q 001757 383 TAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINS 462 (1017)
Q Consensus 383 taiaV~P~d~ry~~l~Gk~~~~P~~~r~~pIi~~~~~Vd~~~GTG~V~~~PaHd~~Dy~~~~~~~L~~i~iid~dG~~~~ 462 (1017)
+||||||+|+||++|+|+++.||++++.+||++|++ |++++|||+||+|||||++||++|++||||++++||++|++++
T Consensus 224 ~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~ 302 (862)
T 1gax_A 224 QAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPA-VEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEG 302 (862)
T ss_dssp CCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTT-CCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCS
T ss_pred EEEEECCCCCHHHHHCCCEEECCCCCCEEEEEECCC-CCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCC
T ss_conf 589989986078887597897888898336970452-1268897625855788823799999839986433579870423
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 89--9888997755479999999997597222234555544102599903620133210114068999998621137996
Q 001757 463 NG--GLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKK 540 (1017)
Q Consensus 463 ~~--g~~~~G~~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~~~~~a~~~v~~~~~~~ 540 (1017)
+| | +|.||.|++||+.|++.|++.|+++..+++.|+||+|||||++|++++++|||++++++++++++++ ++++
T Consensus 303 ~~~~g-~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v---~~~~ 378 (862)
T 1gax_A 303 ERVPE-ALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGL---RRGD 378 (862)
T ss_dssp SSSCT-TTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHH---HHTC
T ss_pred CCCCC-CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCEECCCCCEEEEEECCEEEEEHHHHHHHHHHHH---HCCC
T ss_conf 56775-5489699999999999998679845423444658720588976899951527988699999999999---7099
Q ss_pred EEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCEECCCCHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCC-CC
Q ss_conf 08936020899999983046810020048898768210036730110158888623770677889999745249986-55
Q 001757 541 LELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKK-FE 619 (1017)
Q Consensus 541 i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~-~~ 619 (1017)
++|+|++.++++.+||++++|||||||||||||||+|+|..++. ..++... +... ....|+.++ ..
T Consensus 379 ~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~-----------i~v~~~~-~l~~-~~~~~~~~g~~~ 445 (862)
T 1gax_A 379 IAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQA-----------VNVPRPE-RYLE-DPTSCEACGSPR 445 (862)
T ss_dssp CEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCC-----------EECCCGG-GTTC-CCCSCTTTCCSC
T ss_pred CEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEECCCCCE-----------EEEECCC-CCCC-CCHHHHHCCCHH
T ss_conf 56717899999999972665636753567875568434589998-----------9971211-0355-550234448211
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEECCC
Q ss_conf 33589727888526862100026999981454208866321001200119999999996525999860899755023889
Q 001757 620 MCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 699 (1017)
Q Consensus 620 l~~~~dvlDtWFdSgl~p~s~~g~p~~~~d~~~~~P~dl~~~G~Dil~fW~~~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~ 699 (1017)
++|++||||||||||+||++++|||+++++|++|||+|++++|+||+|||+++|+++++.++|+.||++|++||+|+|.+
T Consensus 446 ~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~ 525 (862)
T 1gax_A 446 LKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEK 525 (862)
T ss_dssp EEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTT
T ss_pred EECCCCCCCEEECCCCCCHHHCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC
T ss_conf 02477645621005775022116887658898419953896273022129999999999861999612799944698379
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 95211148950382101026550557887430999947899987136788999988779137899997526777644442
Q 001757 700 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLD 779 (1017)
Q Consensus 700 G~KMSKSlGNvIdP~dii~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~~Dinf~ 779 (1017)
|+|||||+||+|+|.++|+ +||+|+|||||++.++.++|++|+
T Consensus 526 G~KMSKSlGNvIdP~dli~-------------------------------------~yGaDalR~~ll~~~~~~~D~~fs 568 (862)
T 1gax_A 526 GQKMSKSKGNVIDPLEMVE-------------------------------------RYGADALRFALIYLATGGQDIRLD 568 (862)
T ss_dssp SCBCCTTTTCCCCHHHHHH-------------------------------------HHCHHHHHHHHHHHCCTTCCEECC
T ss_pred CCCCCCCCCCCCCHHHHHH-------------------------------------HCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9776666888789999998-------------------------------------749089999998468777888468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 78889999999999999999876208999999899999999305999999999999999850047989999999999876
Q 001757 780 IQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQY 859 (1017)
Q Consensus 780 ~~~i~~~r~f~nkl~N~~rf~l~~l~~~f~p~~~~~~~~~~~~D~wils~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~ 859 (1017)
.+.+.++++|+|++||++||+++++.+ +.+.. ..++..|+||+++++.+++.+.++|++|+|+.|++.+++|+++
T Consensus 569 ~~~l~~~~~f~nkl~N~~rf~~~~~~~-~~~~~----~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~ 643 (862)
T 1gax_A 569 LRWLEMARNFANKLYNAARFVLLSREG-FQAKE----DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWS 643 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS-CCCCB----CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 899999999999999999999860257-88865----4478889999999999999999999723887999999999988
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 57589998604643699941077799999999999999999960211489999998689999999988714207999887
Q 001757 860 QFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 939 (1017)
Q Consensus 860 ~l~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~ 939 (1017)
++||||++.+|++++.+ +++++.+|+.+|+.+++||||||||+||||||+|+. .+||++++||+.+
T Consensus 644 ~~~n~Yie~~k~~l~~~-------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~------~~sv~~~~wP~~~- 709 (862)
T 1gax_A 644 EFCDWYLEAAKPALKAG-------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG------KEELALEAWPEPG- 709 (862)
T ss_dssp HTTTTHHHHHHHHHHTT-------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC------CSCGGGSCCCCCC-
T ss_pred HHHHHHHHHCCHHHHCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCEEEECCCCCCC-
T ss_conf 76579998704343132-------899999999999999999703215799999996689------9817854899998-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 88986899999999999999999999850689997410899935900599999769999874626808
Q 001757 940 GWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSL 1007 (1017)
Q Consensus 940 ~~~d~~~e~~~e~i~~ii~~iRslr~~~~~~~i~~~~~~~i~~~~~~~~~~l~~~~~~I~~L~~v~~v 1007 (1017)
+.|+.++..++.++++++.+|++|++. +++.+.++.+.+.+ .. +.++.+.+.|+.++|+++|
T Consensus 710 -~~d~~~~~~~~~~~~v~~~~r~~r~~~---~i~~~~~~~~~v~~-~~-~~~~~~~~~i~~~~~~~~~ 771 (862)
T 1gax_A 710 -GRDEEAERAFEALKQAVTAVRALKAEA---GLPPAQEVRVYLEG-ET-APVEENLEVFRFLSRADLL 771 (862)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHH---TCCTTCCEEEEEEE-SC-HHHHHTHHHHHHHHCEEEC
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCEEEEEEEC-HH-HHHHHHHHHHHHHHCCCCC
T ss_conf -678999999999999999999765551---47888704899947-49-9999999999987386656
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=1.00 E-value=1 Score=1502.40 Aligned_cols=791 Identities=24% Similarity=0.379 Sum_probs=693.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7678999997345342332118997367799999999839864588--99999289977999879988862467889999
Q 001757 125 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQD 202 (1017)
Q Consensus 125 ~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~--~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D 202 (1017)
++++|+|.|++| |+|..+|.+||++|+++++|++.. +.++|+|+|++|||||||.||||||+|++++|
T Consensus 6 tl~lp~t~fpm~----------~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~D 75 (917)
T 1ffy_A 6 TLLMPKTDFPMR----------GGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKD 75 (917)
T ss_dssp GSCCCCCCCCSS----------CCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHH
T ss_pred HHCCCCCCCCCC----------CCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 315899999988----------8968886999999998799554532356898645277899999951677899899999
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999883799443303568648148999999999980687433495889999999999999999999988656333578
Q 001757 203 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 282 (1017)
Q Consensus 203 ii~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vEk~l~~~~~~~~~~i~~e~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r 282 (1017)
+++||+||+||+|+|+|||||||||||.+||++ |++++++++++|++.|++|+.++++.|++||++||+|+||+|
T Consensus 76 ii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~-----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~ 150 (917)
T 1ffy_A 76 FIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK-----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFND 150 (917)
T ss_dssp HHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH-----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTS
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC-----CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCC
T ss_conf 999999967998898001763439999999981-----999022899999999999999999999999998190771688
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEEEC
Q ss_conf 30259834599999999999667959990264421179883135432023357774067205765431000266574322
Q 001757 283 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 362 (1017)
Q Consensus 283 ~~~T~d~~~~~~v~~~F~~L~~~GlIYr~~~~V~Wcp~~~TaLSd~EVe~~e~~~~t~~~vp~y~~~~e~g~l~~f~~~l 362 (1017)
+|+|||+.|+++++|+|.+|+++|+|||+.++|||||.|+|+|||+||+|+|..++ .++++|++
T Consensus 151 ~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~----------------~~~v~f~~ 214 (917)
T 1ffy_A 151 PYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSA----------------SIYVAFNV 214 (917)
T ss_dssp CEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEE----------------EEECCBCC
T ss_pred CEECCCHHHHHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCCCHHHHHCCCCCCC----------------EEEEEEEE
T ss_conf 86817989999999999999976996740443112388896844355203456576----------------28999982
Q ss_pred CC------CCCEEEEEECCCCCCCCCCEEEECCC---------CC-------------------CCC----------CCC
Q ss_conf 79------86139986445542345827997589---------71-------------------111----------224
Q 001757 363 EG------GLGEIVVATTRVETMLGDTAIAIHPE---------DA-------------------RYS----------HLH 398 (1017)
Q Consensus 363 ~~------~~~~i~v~TTrPeTl~g~taiaV~P~---------d~-------------------ry~----------~l~ 398 (1017)
.+ ++.+++||||||||||||+||||||+ ++ +|+ +|.
T Consensus 215 ~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 294 (917)
T 1ffy_A 215 KDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELE 294 (917)
T ss_dssp CSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCT
T ss_pred CCCCCCCCCCCEEEEEECCCCHHHHCEEEEECCCCCEEEEEECCCEEEHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 16656547987699996883234345289998998268897178434068999999998608454302222233230046
Q ss_pred CCEEECCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87664688998310572685235888998301189999553899998099411341799911258998889977554799
Q 001757 399 GKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKARE 478 (1017)
Q Consensus 399 Gk~~~~P~~~r~~pIi~~~~~Vd~~~GTG~V~~~PaHd~~Dy~~~~~~~L~~i~iid~dG~~~~~~g~~~~G~~~~~ar~ 478 (1017)
|++++|||.++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++||++|.+++++| +|+||.+++||+
T Consensus 295 g~~~~~P~~~~~~pvi~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~-~~~G~~v~~A~~ 372 (917)
T 1ffy_A 295 WVVAQHPFLDRESLVINGDH-VTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGG-QFEGMFYDKANK 372 (917)
T ss_dssp TCCCBCCTTCCSBCCCCCCS-SCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCS-SCSSSCSSHHHH
T ss_pred CCEEECCCCCCEEEEEECCC-CCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCEECCCCC-CCCCCCHHHHHH
T ss_conf 88897888887124883251-4568997615767989988999999859980001789861677661-138959999899
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 99999997597222234555544102599903620133210114068999998621137996089360208999999830
Q 001757 479 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA 558 (1017)
Q Consensus 479 ~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~ 558 (1017)
.|++.|++.|++++.+++.|+||+|||||+++++++++|||++++++++++++++ .+++|+|++.++++.+||++
T Consensus 373 ~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i-----~~~~~~P~~~~~r~~~~l~~ 447 (917)
T 1ffy_A 373 AVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAI-----ENTNFKVNWGKTRIYNMVRD 447 (917)
T ss_dssp TTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHH-----HTSEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEHHHHHHHHHHHH-----HCCCCCCHHHHHHHHHHHHC
T ss_conf 9999999679843544443458774588977899823604765899999999998-----63851078999999999844
Q ss_pred CCCCCCEEECCCCCCCCCCEECCCCHH-HHCC----------CCCCCCEEEECCHHHHHHHHHHHCCCCC-CCCCCCCCC
Q ss_conf 468100200488987682100367301-1015----------8888623770677889999745249986-553358972
Q 001757 559 IRDWCVSRQLWWGHQIPAWYVTLEDDE-LKEL----------GSYNDHWIVARDEKEALAVANKKFSGKK-FEMCQDPDV 626 (1017)
Q Consensus 559 l~DWcISRqr~WG~pIP~~~~~~~~~~-~~~~----------~~~~~~w~~~~~~~ea~~~~~~~~~~~~-~~l~~~~dv 626 (1017)
++|||||||||||+|||+|+|.. +.. +.+. ......|+.+. ..+... ....||.++ ..++|++||
T Consensus 448 ~~DW~ISRqr~WG~PIP~~~~~~-g~~~~~~~~~~~i~~~~~~~g~~~W~~~~-~~~~~~-~~~~~~~~g~~~~~~~~D~ 524 (917)
T 1ffy_A 448 RGEWVISRQRVWGVPLPVFYAEN-GEIIMTKETVNHVADLFAEHGSNIWFERE-AKDLLP-EGFTHPGSPNGTFTKETDI 524 (917)
T ss_dssp CCCEECEESCSSSCBCCCEECTT-SCEECCHHHHHHHHHHHHHHCTHHHHHSC-HHHHSS-TTCCCSSCTTSCCEECCCE
T ss_pred CCCCEEECCCCCCCCCCEEECCC-CCEECCHHHHHHHHHHHHHCCCCCCCCCC-HHHHCC-CCCCCCCCCCCCCCCCCCC
T ss_conf 75340542677686546036799-98836788989999875422875445679-778465-5443556774444445787
Q ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCC
Q ss_conf 78885268621000269999814542088663210012001199999999965259998608997550238899521114
Q 001757 627 LDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 706 (1017)
Q Consensus 627 lDtWFdSgl~p~s~~g~p~~~~d~~~~~P~dl~~~G~Dil~fW~~~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKS 706 (1017)
||||||||++|++++++. +++ .||+|++++|+||+||||++|++.+..+.|..||++|++||||+|.+|+|||||
T Consensus 525 lD~WfdSg~~~~~~l~~~---~~~--~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKS 599 (917)
T 1ffy_A 525 MDVWFDSGSSHRGVLETR---PEL--SFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKS 599 (917)
T ss_dssp ECHHHHHHTHHHHTTTTS---TTC--CSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSS
T ss_pred CCEECCCCCCHHHHCCCC---HHC--CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 673168999888871883---114--898549999856113199999999999629985532037613884788681012
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 89503821010265505578874309999478999871367889999887791378999975267776444427888999
Q 001757 707 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1017)
Q Consensus 707 lGNvIdP~dii~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~~Dinf~~~~i~~~ 786 (1017)
+||||+|.++|+ +||+|++||||++ ++.++|++|+.+.+.+.
T Consensus 600 lGNvV~P~dvi~-------------------------------------~yGaDalR~~lls-~~~~~D~~fs~~~l~~~ 641 (917)
T 1ffy_A 600 LGNVIVPDQVVK-------------------------------------QKGADIARLWVSS-TDYLADVRISDEILKQT 641 (917)
T ss_dssp SSCCCCHHHHHH-------------------------------------HTCHHHHHHHHHT-SCTTSCEECCHHHHHHH
T ss_pred CCCCCCHHHHHH-------------------------------------HCCHHHHHHHHHC-CCCCCCCCCCHHHHHHH
T ss_conf 688478589987-------------------------------------5798999988760-58888862489999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999876208999999-899999999305999999999999999850047989999999999876575899
Q 001757 787 RQWCNKLWNAVRFSMSKLGEGFVPP-LKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVF 865 (1017)
Q Consensus 787 r~f~nkl~N~~rf~l~~l~~~f~p~-~~~~~~~~~~~D~wils~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Y 865 (1017)
++++++|||++||+++++.+ |.+. .......+...|+|++++++.+++.+.++|++|+|+.|++.+++|+++++||+|
T Consensus 642 ~~~~~kl~n~~r~~l~nl~~-~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Y 720 (917)
T 1ffy_A 642 SDDYRKIRNTLRFMLGNIND-FNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 720 (917)
T ss_dssp HHHHHHHHHHHHHHHHTSTT-CCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999988765420-57433567810058879999999999999999999766989999999999999988899
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHH
Q ss_conf 98604643699941077799999999999999999960211489999998689999999988714207999887889868
Q 001757 866 IEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDER 945 (1017)
Q Consensus 866 ie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~ 945 (1017)
++.+|++++.+... +..|++++.+|+.+++.+++||+|||||+|||||++|+.. ..+||+.++||+.++ .|+.
T Consensus 721 l~~~k~rl~~~~~~-~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~----~~~sv~~~~wP~~~~--~~~~ 793 (917)
T 1ffy_A 721 LDYGKDILYIEQRD-SHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV----KEESVHLADMPKVVE--VDQA 793 (917)
T ss_dssp HHHHHHHHTTSCTT-CHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC----SSSSGGGSCCCCCCC--CCHH
T ss_pred HHHCCHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC----CCCCEEECCCCCCCC--CHHH
T ss_conf 87500244236778-0999999999999999999972153558999999973567----899758137999983--1089
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCE--EEEEECCCC-HHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999999----999999999850689997410--899935900-5999997699998746268089931
Q 001757 946 AEFEMDLVEST----VRCIRSLRAEVLGKQKNERLP--AIAFCQTKG-VSEIIRSHELEIVTLSTSSSLKRIS 1011 (1017)
Q Consensus 946 ~e~~~e~i~~i----i~~iRslr~~~~~~~i~~~~~--~~i~~~~~~-~~~~l~~~~~~I~~L~~v~~v~i~~ 1011 (1017)
++..++.++++ ++.+|.+|++. +++.+.+ +.|.+.++. ..+.++.+ +.|+.++++++|++..
T Consensus 794 l~~~~~~~~~v~~~v~~~~~~~R~~~---~i~~~l~~~v~i~~~~~~~~~~~l~~~-~~l~~~~~~s~~~~~~ 862 (917)
T 1ffy_A 794 LLDKWRTFMNLRDDVNRALETARNEK---VIGKSLEAKVTIASNDKFNASEFLTSF-DALHQLFIVSQVKVVD 862 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---SCSSGGGEEEEEECCSSCCHHHHGGGC-SCHHHHTTSSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCEEEEEEECCHHHHHHHHHHH-HHHHHHHCCCCEEEEC
T ss_conf 99999999999999999999999836---889877047999958706699998647-9999986636249956
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=1.00 E-value=1 Score=1448.19 Aligned_cols=743 Identities=24% Similarity=0.409 Sum_probs=664.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 189973677999999998398645889--999928997799987998886246788999999999883799443303568
Q 001757 145 KEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1017)
Q Consensus 145 ~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~~G~D 222 (1017)
+.|+|..+|++||++|+++++|++..+ .++|+|+|++|||||||.||||||+|++++|+++||+||+||+|+|++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 68997898899999998779903570015899968995289999998704455737999999999995699403436436
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 64814899999999998068743349588999999999999999999998865633357830259834599999999999
Q 001757 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1017)
Q Consensus 223 ~~Glp~q~~vEk~l~~~~~~~~~~i~~e~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1017)
|||+|||.+|+++++...+..++++|+++|++.|++|++++++.|++||++||+|+||+|+|+|||+.|+++|+|+|.+|
T Consensus 86 ~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L 165 (821)
T 1ile_A 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (821)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEECCHHHHHHHHHHHHHH
T ss_conf 77865799999984625552076559999999999999999999999999828757157985878989999999999999
Q ss_pred HHCCCEEECCEEEEECCCCCCCCCCCCCC--CCCCCCCEEEECCCCCCCCEEEEEEEEEEECCCC------CCEEEEEEC
Q ss_conf 66795999026442117988313543202--3357774067205765431000266574322798------613998644
Q 001757 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVD--YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGG------LGEIVVATT 374 (1017)
Q Consensus 303 ~~~GlIYr~~~~V~Wcp~~~TaLSd~EVe--~~e~~~~t~~~vp~y~~~~e~g~l~~f~~~l~~~------~~~i~v~TT 374 (1017)
+++|+|||+.++|||||.|+|+|||+||+ |++.. +..++++|++++. +.+|+||||
T Consensus 166 ~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~----------------~~~~~v~f~~~~~~~~~~~~~~l~v~TT 229 (821)
T 1ile_A 166 FDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQ----------------DPSVYVRFPLKEPKKLGLEKASLLIWTT 229 (821)
T ss_dssp HHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEE----------------EEEEEEEEEBSSGGGGTCSSEEEEEEES
T ss_pred HHCCCEEECCCCEEECCCCCCCCCHHHHHCCCCCCC----------------CCEEEEEEEECCCCCCCCCCCEEEEECC
T ss_conf 986985544742573178897631767515720466----------------8459999983587666788988999949
Q ss_pred CCCCCCCCCEEEECCC---------CCCC-----------------------CCCCCCEEECCCC---CCCCCEEECCCC
Q ss_conf 5542345827997589---------7111-----------------------1224876646889---983105726852
Q 001757 375 RVETMLGDTAIAIHPE---------DARY-----------------------SHLHGKFAIHPFN---GRKIPIICDAIL 419 (1017)
Q Consensus 375 rPeTl~g~taiaV~P~---------d~ry-----------------------~~l~Gk~~~~P~~---~r~~pIi~~~~~ 419 (1017)
||||||||+||||||+ +++| ++|+|+.+.|||. ++.+||+++++
T Consensus 230 rP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~- 308 (821)
T 1ile_A 230 TPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADY- 308 (821)
T ss_dssp CGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTT-
T ss_pred CCHHHHHCEEEEECCCCCEEEEECCCCEEEEHHHHHHHHHHHCCEEEEEECHHHHCCCEEECCCCCCCCCEEEEEECCC-
T ss_conf 9721434579999899715678717947986289999998408589887506874598898677666898779985471-
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 35888998301189999553899998099411341799911258998889977554799999999975972222345555
Q 001757 420 VDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMR 499 (1017)
Q Consensus 420 Vd~~~GTG~V~~~PaHd~~Dy~~~~~~~L~~i~iid~dG~~~~~~g~~~~G~~~~~ar~~vi~~L~~~gl~~~~~~~~~~ 499 (1017)
|++++|||+||+|||||++||++|++|||+++++||++|+++++ | |+||.+++||+.|++.|++.|++++.+++.|+
T Consensus 309 V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~--~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~ 385 (821)
T 1ile_A 309 VSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P--FKGLYFREANRAILRDLRGRGLLFKEESYLHS 385 (821)
T ss_dssp CCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G--GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCEEECCCCCCCCC-C--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 86688976447447798789999998599832047899737336-7--68979899889999999967991300023125
Q ss_pred CCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCEEEECCCC-HHHHHHHHHHCCCCCCEEECCCCCCCCCCE
Q ss_conf 4410259990362013321011406899999862113799608936020-899999983046810020048898768210
Q 001757 500 LGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQY-TAEWRRWLEAIRDWCVSRQLWWGHQIPAWY 578 (1017)
Q Consensus 500 ~p~c~Rs~~~i~~~~~~QWFi~~~~~~~~a~~~v~~~~~~~i~~~P~~~-~~~~~~wl~~l~DWcISRqr~WG~pIP~~~ 578 (1017)
||+|||||+++++++++|||++++++++++++++ ++++|+|+.. ++++.+||++++|||||||||||||||+|+
T Consensus 386 ~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~-----~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~ 460 (821)
T 1ile_A 386 YPHCWRCSTPLMYYATESWFIKNTLFKDELIRNN-----QEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWV 460 (821)
T ss_dssp EEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHH-----HHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEE
T ss_pred CCEECCCCCEEEEEECCHHHHCHHHHHHHHHHHH-----CCEEEECCHHHHHHHHHHHHCCCHHEECCCCCCCCEEEEEE
T ss_conf 8774688997999835515526699999999975-----68189783446769999983771310004677788231899
Q ss_pred ECCCCHHHHCCCCCCCCEEEECCHHHHHH------------------HHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 03673011015888862377067788999------------------974524998655335897278885268621000
Q 001757 579 VTLEDDELKELGSYNDHWIVARDEKEALA------------------VANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSV 640 (1017)
Q Consensus 579 ~~~~~~~~~~~~~~~~~w~~~~~~~ea~~------------------~~~~~~~~~~~~l~~~~dvlDtWFdSgl~p~s~ 640 (1017)
|..++. .++++ .+++... .....|| ++..++|++||||||||||++|++.
T Consensus 461 ~~~~~~----------~~vi~-~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~~ 528 (821)
T 1ile_A 461 CQACGK----------EEAIG-SFQELKARATKPLPEPFDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFAS 528 (821)
T ss_dssp ESSSSC----------CEECC-SHHHHHHHBSSCCCSSCCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHHT
T ss_pred ECCCCC----------EEEEC-CHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCC-CCCCHHHCCCCCCEECCCCCCHHHH
T ss_conf 659996----------78527-59999750556662122204310012335788-9976321653000132366124765
Q ss_pred CCCCCCC-HHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2699998-145420886632100120011999999999652599986089975502388995211148950382101026
Q 001757 641 LGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING 719 (1017)
Q Consensus 641 ~g~p~~~-~d~~~~~P~dl~~~G~Dil~fW~~~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~dii~g 719 (1017)
++||.++ ++|++|||+|++++|.||+|||+++|++++..++++.||++|++||+|++.+|+|||||+||+|+|.|+|+
T Consensus 529 ~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~- 607 (821)
T 1ile_A 529 LHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR- 607 (821)
T ss_dssp TTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHT-
T ss_pred CCCCCCCHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHH-
T ss_conf 0898546677853388610033065660199999998998629877655999800998999877765788999999998-
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHH
Q ss_conf 550557887430999947899987136788999988779137899997526777644442788899-9999999999999
Q 001757 720 ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG-YRQWCNKLWNAVR 798 (1017)
Q Consensus 720 ~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~~Dinf~~~~i~~-~r~f~nkl~N~~r 798 (1017)
+||+|++||||++.++.++|++|+.+.+.+ +++++|+|||+++
T Consensus 608 ------------------------------------~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~ 651 (821)
T 1ile_A 608 ------------------------------------KFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYS 651 (821)
T ss_dssp ------------------------------------TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHH
T ss_pred ------------------------------------HHCHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------------------72979999999837898888575499987999999999999999
Q ss_pred HHHH--HHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9876--20899999-98999999993059999999999999998500479899999999998765758999860464369
Q 001757 799 FSMS--KLGEGFVP-PLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 875 (1017)
Q Consensus 799 f~l~--~l~~~f~p-~~~~~~~~~~~~D~wils~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~ 875 (1017)
|++. ++. ++.| ... ....+...|+|++++++.+++.+.++|++|+|+.|++.+++|+++++||+|++.+|++++.
T Consensus 652 ~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~ 729 (821)
T 1ile_A 652 FFVTYANLD-RPDLKNPP-PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWK 729 (821)
T ss_dssp HHHHHHHHH-CCCTTSCC-CSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHT
T ss_pred HHHHHHCCC-CCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999851113-68853333-4333888899999999999999999997668999999999999999999999985211025
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCC-CEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99-41077799999999999999999960211489999998689999999988-71420799988788986899999999
Q 001757 876 DN-PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKE-SIMLCEYPSAVEGWTDERAEFEMDLV 953 (1017)
Q Consensus 876 ~~-~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~-SI~~a~~P~~~~~~~d~~~e~~~e~i 953 (1017)
.. .. .+++++.+|+.+|+.+++||+|||||+|||||++|+...+ ...+ ||+.++||+.++.+.|+.++..++.+
T Consensus 730 ~~~~~---~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~-~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~ 805 (821)
T 1ile_A 730 NEDAL---DREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVR-LEAKESVHLADWPEADPALADEALVAQMRAV 805 (821)
T ss_dssp CTTTS---STTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTS-TTSCSSGGGSCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC-CCCCCCEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 77767---7899999999999999987088666579999986633346-7788865821689997100898999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999985
Q 001757 954 ESTVRCIRSLRAEV 967 (1017)
Q Consensus 954 ~~ii~~iRslr~~~ 967 (1017)
+++++.+|++|+++
T Consensus 806 ~~~~~~~r~~r~~~ 819 (821)
T 1ile_A 806 LKVVDLARAARAKS 819 (821)
T ss_dssp HHHHHHHTTCTTSC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999875
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=1312.00 Aligned_cols=746 Identities=22% Similarity=0.348 Sum_probs=624.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCC---CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 189973677999999998398645889999---92899779998799888624678899999999988379944330356
Q 001757 145 KEYNPSSVEKSWYSWWENSGYFIADNKSSK---PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1017)
Q Consensus 145 ~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k---~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~~G~ 221 (1017)
..|+|.++|++||++|+++++|++..+ ++ |+|+|++|||||||.|||||++|++++|+++||+||+||+|+|+|||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 989989999999999986798034722-2688996899848998888750123587899999999998179960888727
Q ss_pred CCCCHHHHHHHHHHHHH-----HHCCCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHH
Q ss_conf 86481489999999999-----806874334958899--99999999999999999988656333578302598--3459
Q 001757 222 DHAGIATQVVVEKKLMR-----ERKLTRHDIGREQFV--SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--EKRS 292 (1017)
Q Consensus 222 D~~Glp~q~~vEk~l~~-----~~~~~~~~i~~e~f~--~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d--~~~~ 292 (1017)
||||+|++..+++.... +.-...+.++++++. ..|++|+.++++.+++||++||+|+||+|+|+||| |.|+
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~ 160 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHH
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEECCCCHHHH
T ss_conf 99881889999986036536899999860998788888888999999999999999998194273589768788983589
Q ss_pred HHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEEECCCCC--CEEE
Q ss_conf 99999999996679599902644211798831354320233577740672057654310002665743227986--1399
Q 001757 293 KAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL--GEIV 370 (1017)
Q Consensus 293 ~~v~~~F~~L~~~GlIYr~~~~V~Wcp~~~TaLSd~EVe~~e~~~~t~~~vp~y~~~~e~g~l~~f~~~l~~~~--~~i~ 370 (1017)
++|+|+|.+|+++|+|||+.++|||||.|+|+|||+||++.+.... +..++++|++.+++ .+++
T Consensus 161 ~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~--------------~~~~~v~f~~~~~~~~~~l~ 226 (967)
T 1wz2_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPI--------------LDYIIIKFELRENGEVIYLP 226 (967)
T ss_dssp HHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCE--------------ECCEEEEEECCCSSSCCEEE
T ss_pred HHHHHHHHHHHHCCCEEEECEEECCCCCCCCCCCHHHHCCCCCCEE--------------CEEEEEEEEECCCCCCEEEE
T ss_conf 9999999999978998971467623587788716656506987401--------------21699999835888756999
Q ss_pred EEECCCCCCCCCCEEEECCC---------C----C------------CC-------------CCCCCCEEECCCCCCCCC
Q ss_conf 86445542345827997589---------7----1------------11-------------122487664688998310
Q 001757 371 VATTRVETMLGDTAIAIHPE---------D----A------------RY-------------SHLHGKFAIHPFNGRKIP 412 (1017)
Q Consensus 371 v~TTrPeTl~g~taiaV~P~---------d----~------------ry-------------~~l~Gk~~~~P~~~r~~p 412 (1017)
|||||||||+||+||||||+ + + +| ++|+|+++.||++++.+|
T Consensus 227 i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ip 306 (967)
T 1wz2_A 227 AATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVI 306 (967)
T ss_dssp EEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEE
T ss_pred EECCCCHHHHHHEEEEECCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECHHHCCCEEECCCCCCCEE
T ss_conf 98388507556508998889837999916987542321199999999864058489999881550689898889998037
Q ss_pred EEECCCCCCCCCCCCCEECCCCCCCCHHHH----------HHHHCCC--------EEEEECC------------------
Q ss_conf 572685235888998301189999553899----------9980994--------1134179------------------
Q 001757 413 IICDAILVDPKFGTGAVKITPAHDPNDFDV----------GKRHNLE--------FINIFTD------------------ 456 (1017)
Q Consensus 413 Ii~~~~~Vd~~~GTG~V~~~PaHd~~Dy~~----------~~~~~L~--------~i~iid~------------------ 456 (1017)
|+++++ |++++|||+||+|||||++||++ +++|||+ ++++|+.
T Consensus 307 i~~~~~-V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~ 385 (967)
T 1wz2_A 307 ILPAEF-VDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIK 385 (967)
T ss_dssp EEECSS-CCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSC
T ss_pred EEECCC-CCCCCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCC
T ss_conf 994052-4589886217860689877899998640013579872996010256562233514775653135555530677
Q ss_pred ---------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE-C
Q ss_conf ---------------------991125899888997755479999999997597222234555544102599903620-1
Q 001757 457 ---------------------DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPM-I 514 (1017)
Q Consensus 457 ---------------------dG~~~~~~g~~~~G~~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~-~ 514 (1017)
+|+|+ +| +|+|+.+++||+.|++.|++.|+++....+.| +|+|||||++++++ +
T Consensus 386 ~~~d~~~l~~a~~~~y~~~~~~G~~~--~g-~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~ 461 (967)
T 1wz2_A 386 SQKDKEKLEQATKTIYKAEYHKGIFK--VP-PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKII 461 (967)
T ss_dssp CCSSCTTHHHHTTHHHHHHHHSCBCC--SS-SSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEE--CC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCEECCCCCEEEEECC
T ss_conf 86416777777777654014682694--56-74881889989999999996798157886587-9637899988999536
Q ss_pred CCCCEEECCH--HHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCCCC---CEECCCCHHHHCC
Q ss_conf 3321011406--8999998621137996089360208999999830468100200488987682---1003673011015
Q 001757 515 KPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDELKEL 589 (1017)
Q Consensus 515 ~~QWFi~~~~--~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~---~~~~~~~~~~~~~ 589 (1017)
++|||+++++ +++.+++++ ++++|+|++.++++.+||++++||||||||+||||||+ |.+. .+.++
T Consensus 462 ~~qWFi~~~~~~~k~~~l~~~-----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~----~~~ds 532 (967)
T 1wz2_A 462 HDQWFIDYGNPEWKEKARKAL-----ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIE----SLSDS 532 (967)
T ss_dssp SSCEEEESCCTTHHHHHHHHH-----TTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEEC----HHHHT
T ss_pred CCCCCEECCCHHHHHHHHHHH-----HCCEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC----CCCCC
T ss_conf 776414468067899999866-----123762745436688866204371414678788508867553346----67787
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC----CC-CCC-CCCCCCCC-----CHHHHHHCCCCC
Q ss_conf 88886237706778899997452499865533589727888526----86-210-00269999-----814542088663
Q 001757 590 GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSS----GL-FPL-SVLGWPDD-----TDDLKAFYPTSV 658 (1017)
Q Consensus 590 ~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~~~dvlDtWFdS----gl-~p~-s~~g~p~~-----~~d~~~~~P~dl 658 (1017)
+.|..++.+++..++.. ..++..... -.++++|+||.+ |. +++ ...|||.. +++|++|||+|+
T Consensus 533 ~iYv~~~~~~~~~~~~~----~~~g~~~~~--l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di 606 (967)
T 1wz2_A 533 TIYMAYYTISRHINKLR----QEGKLDPEK--LTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDW 606 (967)
T ss_dssp TSTHHHHHHHHHHHHHH----HTTCCCGGG--CCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSE
T ss_pred CEEEEHHHHHHHHHHHH----HHCCCCHHH--CCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 25754000356898877----762999688--491104054137656576320155419997887653799983389707
Q ss_pred CCEEECCCCHHHHHHHHHHHHHCCCCCC-EEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHH
Q ss_conf 2100120011999999999652599986-089975502388995211148950382101026550557887430999947
Q 001757 659 LETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPK 737 (1017)
Q Consensus 659 ~~~G~Dil~fW~~~~~~~~~~l~~~~Pf-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dii~g~~l~~l~~~l~~~nl~~~ 737 (1017)
+.+|+||+|||...+++++.++++..|| +.+++||||++ +|+|||||+||+|+|.++|+
T Consensus 607 ~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~------------------- 666 (967)
T 1wz2_A 607 RCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIE------------------- 666 (967)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHH-------------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEE-CCEECCCCCCCCCCHHHHHH-------------------
T ss_conf 8653273032899999999997096644546899427960-88781214467799999998-------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 89998713678899998877913789999752677764444278889999999999999999876208999999899999
Q 001757 738 ELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPH 817 (1017)
Q Consensus 738 e~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~~Dinf~~~~i~~~r~f~nkl~N~~rf~l~~l~~~f~p~~~~~~~ 817 (1017)
+||+|++||||++.++.++|++|+.+.+.+++++++++||+++++++.. .|. ..
T Consensus 667 ------------------~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~----~~~----~~ 720 (967)
T 1wz2_A 667 ------------------ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE----VKG----NV 720 (967)
T ss_dssp ------------------TTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC----CCC----CC
T ss_pred ------------------HHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC----CCC----CC
T ss_conf ------------------7195899999995799777864078999999999999999999986478----877----44
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99930599999999999999985004798999999999987657589998604643699941077799999999999999
Q 001757 818 NLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLET 897 (1017)
Q Consensus 818 ~~~~~D~wils~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~ 897 (1017)
.++..|+||+++++.+++.+.++|++|+|+.|+..++.|++ ..+|+|++.+|+. .+++++.+|+.+|+.
T Consensus 721 ~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~-~~~n~Yi~~~k~~----------~~~~~~~~l~~~l~~ 789 (967)
T 1wz2_A 721 ELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM-NDLRWYLRRTEGR----------DDEAKRYVLRTLADV 789 (967)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH-HHHHHHHHHTTTC----------CCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHCCCH----------HHHHHHHHHHHHHHH
T ss_conf 27888999999999999999999982489999999999999-9999888751564----------478999999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 99996021148999999868999999998871420799988788986899999999999999999999850689997410
Q 001757 898 GLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP 977 (1017)
Q Consensus 898 ~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~~e~~~e~i~~ii~~iRslr~~~~~~~i~~~~~ 977 (1017)
+++||||||||+|||||+.|+. .+||+.++||++++.+.|+.++..++.++++++.+|++|+.+ +++.+..
T Consensus 790 l~~LLaP~~P~~aEeiw~~L~~------~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~~~~~~---~~~~p~~ 860 (967)
T 1wz2_A 790 WVRLMAPFTPHICEELWEKLGG------EGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVA---KIENAKR 860 (967)
T ss_dssp HHHHHTTTSHHHHHHHHHHSSC------CSCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHTS---CCCCSBE
T ss_pred HHHHHCCCCCHHHHHHHHHCCC------CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCE
T ss_conf 9998355455589999996599------985540389999810089899999999999999999999982---8999976
Q ss_pred EEEEECCCCHHHHH
Q ss_conf 89993590059999
Q 001757 978 AIAFCQTKGVSEII 991 (1017)
Q Consensus 978 ~~i~~~~~~~~~~l 991 (1017)
+.|.+.++...+.+
T Consensus 861 ~~i~~~~~~~~~~~ 874 (967)
T 1wz2_A 861 AYIYTAEDWKWKVA 874 (967)
T ss_dssp EEECCCTTTTTTTH
T ss_pred EEEEECCHHHHHHH
T ss_conf 89997988999999
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=1.00 E-value=1 Score=1206.28 Aligned_cols=650 Identities=24% Similarity=0.380 Sum_probs=544.0
Q ss_pred CHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 23321189973677999999998398645889999928997799987998886246788999999999883799443303
Q 001757 140 SKQMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVP 219 (1017)
Q Consensus 140 ~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~~ 219 (1017)
..+|.+.|+|.++|++||++|+++++|++..+.++++|++++|||||||.|||||+++++++|+++||+||+||+|+|++
T Consensus 18 ~~~m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~ 97 (880)
T 4arc_A 18 GSHMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPI 97 (880)
T ss_dssp ---CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 50014569959999999999986698146876899988997589999898353244889999999999997299368735
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 56864814899999999998068743349588999999999999999999998865633357830259834599999999
Q 001757 220 GMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAF 299 (1017)
Q Consensus 220 G~D~~Glp~q~~vEk~l~~~~~~~~~~i~~e~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F 299 (1017)
||||||+|+|..+++ .|.+ +++|++++++.|++||++||+|+||+|+++|||+.|+++++|+|
T Consensus 98 G~D~~Glpie~~a~~-----~g~~------------p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f 160 (880)
T 4arc_A 98 GWDAFGLPAEGAAVK-----NNTA------------PAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFF 160 (880)
T ss_dssp EECCCSTHHHHHHHH-----TTSC------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH-----CCCC------------HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHH
T ss_conf 716658699999998-----2998------------99999999999999999828975778887738878999999999
Q ss_pred HHHHHCCCEEECCEEEEECCCCCCCCCCCCCC------------CCCCCCCEEEECCCCCCC--------------CE--
Q ss_conf 99966795999026442117988313543202------------335777406720576543--------------10--
Q 001757 300 VRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD------------YVDIPKREMRNVPGYEKQ--------------VE-- 351 (1017)
Q Consensus 300 ~~L~~~GlIYr~~~~V~Wcp~~~TaLSd~EVe------------~~e~~~~t~~~vp~y~~~--------------~e-- 351 (1017)
.+|+++|+|||+.++|||||.|+|+|||.||. +++.. ..+++++.|.+. +.
T Consensus 161 ~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~-~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~ 239 (880)
T 4arc_A 161 TELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIP-QWFIKITAYADELLNDLDKLDHWPDTVKTM 239 (880)
T ss_dssp HHHHHTTCEEEEEECC------------------------------CEE-EEEECGGGGHHHHHHHGGGCTTSCHHHHHH
T ss_pred HHHHHCCCEEEECEEEEECCCCCCEECCHHHHCCCCCCCCCCCEEEECC-CEEEEECHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 9999779889926347634876888051664168576789841799714-258861254788998876403565889999
Q ss_pred ------EEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCC----------------------------
Q ss_conf ------0026657432279861399864455423458279975897111122----------------------------
Q 001757 352 ------FGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHL---------------------------- 397 (1017)
Q Consensus 352 ------~g~l~~f~~~l~~~~~~i~v~TTrPeTl~g~taiaV~P~d~ry~~l---------------------------- 397 (1017)
-..-.+++|++++++.+|+|||||||||+|++||||||++++++++
T Consensus 240 ~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (880)
T 4arc_A 240 QRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATME 319 (880)
T ss_dssp HHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC---------------
T ss_pred HHHHHCCCCCEEEEEEECCCCCEEEEEECCCHHHCCCEEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCE
T ss_conf 98650446623899884699855899938843413870899899867799871470999999999860671243430242
Q ss_pred -----CCCEEECCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEEECC---------------C
Q ss_conf -----48766468899831057268523588899830118999955389999809941134179---------------9
Q 001757 398 -----HGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD---------------D 457 (1017)
Q Consensus 398 -----~Gk~~~~P~~~r~~pIi~~~~~Vd~~~GTG~V~~~PaHd~~Dy~~~~~~~L~~i~iid~---------------d 457 (1017)
+|++++||++++++||+.++| |++++|||+||+|||||++||++|++||||++++|+. +
T Consensus 320 ~~g~~~g~~~~~P~~~~~ipi~~~~y-V~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~ 398 (880)
T 4arc_A 320 KKGVDTGFKAVHPLTGEEIPVWAANF-VLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEK 398 (880)
T ss_dssp -CEEEEEEEEECTTTCCEEEEEEETT-SCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSC
T ss_pred EECCCCCCEEECCCCCCEEEEEEECC-CCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 22102583895689998857998376-04678986089835898789999998399814753367665432110131577
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCC
Q ss_conf 91125899888997755479999999997597222234555544102599903620133210114068999998621137
Q 001757 458 GKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDD 537 (1017)
Q Consensus 458 G~~~~~~g~~~~G~~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~~~~~a~~~v~~~~ 537 (1017)
|.+. |+| .|+||.+++||+.|++.|+++|++.+.
T Consensus 399 g~~~-ns~-~~~Gl~~~eA~~~ii~~L~~~g~~~~~-------------------------------------------- 432 (880)
T 4arc_A 399 GVLF-NSG-EFNGLDHEAAFNAIADKLTAMGVGERK-------------------------------------------- 432 (880)
T ss_dssp CCBC-SSG-GGTTCCHHHHHHHHHHHHHHTTSEEEE--------------------------------------------
T ss_pred CEEE-CCC-CCCCCCHHHHHHHHHHHHHHCCCCCEE--------------------------------------------
T ss_conf 5162-574-569979999999999999976986416--------------------------------------------
Q ss_pred CCCEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCEECCCCHH------HHCCCCCCC-CEEEECCHHHHHHHHH
Q ss_conf 996089360208999999830468100200488987682100367301------101588886-2377067788999974
Q 001757 538 KKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELGSYND-HWIVARDEKEALAVAN 610 (1017)
Q Consensus 538 ~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~------~~~~~~~~~-~w~~~~~~~ea~~~~~ 610 (1017)
+++ +++|||||||||||+|||+|||..|+.. ++...+.+. ..-.+.++..+..+..
T Consensus 433 ---v~y--------------rlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~ 495 (880)
T 4arc_A 433 ---VNY--------------RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAK 495 (880)
T ss_dssp ---EEE--------------SCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTE
T ss_pred ---EEE--------------ECCCCEEEEEECCCCCCEEEEECCCCEEECCHHHCCCCCCHHCCCCCCCCCHHHCCCCEE
T ss_conf ---899--------------735440112204578500899789975857768774226201154788993576756414
Q ss_pred HHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC------HHHHHHCCCCCCCEEEC--CCCHHHHHHH-----HHH
Q ss_conf 5249986553358972788852686210002699998------14542088663210012--0011999999-----999
Q 001757 611 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT------DDLKAFYPTSVLETGHD--ILFFWVARMV-----MLG 677 (1017)
Q Consensus 611 ~~~~~~~~~l~~~~dvlDtWFdSgl~p~s~~g~p~~~------~d~~~~~P~dl~~~G~D--il~fW~~~~~-----~~~ 677 (1017)
..||+ ..++|++|||||||||+ |||+.++||.++ +++++|||+|++++|.| |+|+|++|+. .+|
T Consensus 496 ~~cpg--~~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g 572 (880)
T 4arc_A 496 TTVNG--MPALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAG 572 (880)
T ss_dssp EESSS--SEEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTT
T ss_pred ECCCC--CCCEECCCCCCCCCCCC-HHHHHHCCCCCCCCCCCHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02589--76266897677701072-8888661997434445857785158924810353467888989999999999822
Q ss_pred HHHCCCCCCEEEEECCEEE-------CCCCC------------------------------------CCCCCCCCCCCCC
Q ss_conf 6525999860899755023-------88995------------------------------------2111489503821
Q 001757 678 IKLGGEVPFTKVYLHPMIR-------DAHGR------------------------------------KMSKSLGNVIDPL 714 (1017)
Q Consensus 678 ~~l~~~~Pfk~V~~Hg~v~-------D~~G~------------------------------------KMSKSlGNvIdP~ 714 (1017)
+ +.++.||++|++||||+ |.+|+ |||||+||+|+|.
T Consensus 573 ~-~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~ 651 (880)
T 4arc_A 573 M-VNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQ 651 (880)
T ss_dssp S-CCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHH
T ss_pred C-CCCCCCHHHEEEECEEEECCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 4-367887688588332961231012567850101778810012455542100014786212555532468699978989
Q ss_pred CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 01026550557887430999947899987136788999988779137899997526777644442788899999999999
Q 001757 715 EVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLW 794 (1017)
Q Consensus 715 dii~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~~Dinf~~~~i~~~r~f~nkl~ 794 (1017)
++|+ +||||++|||+++.++.++|++|+.+.++++++|++++|
T Consensus 652 diIe-------------------------------------kYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlw 694 (880)
T 4arc_A 652 VMVE-------------------------------------RYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVW 694 (880)
T ss_dssp HHHH-------------------------------------HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHH
T ss_pred HHHH-------------------------------------HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9998-------------------------------------809328999998448877886148999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999998762089999998999999993059999999999999998500-4798999999999987657589998604643
Q 001757 795 NAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIEAIKPYF 873 (1017)
Q Consensus 795 N~~rf~l~~l~~~f~p~~~~~~~~~~~~D~wils~L~~~i~~v~~a~e-~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l 873 (1017)
|++++.+..... + ......++..|+|++++++.+++.++++|+ +|+|+.|++++|+|+ ++++. |
T Consensus 695 n~~~~~~~~~~~---~--~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efv-n~l~k-~-------- 759 (880)
T 4arc_A 695 KLVYEHTAKGDV---A--ALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM-NKLAK-A-------- 759 (880)
T ss_dssp HHHHHHHHTCCC---C--CCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHT-S--------
T ss_pred HHHHHHHHCCCC---C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHHHH-H--------
T ss_conf 999998742554---5--5663327877899999999999999999986556469999999999-99986-3--------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 6999410777999999999999999999602114899999986899999999887142079998878
Q 001757 874 AGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEG 940 (1017)
Q Consensus 874 ~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~ 940 (1017)
.++. ..++.+|+.+++.+++||||||||+|||||++|+. .+||+.++||++++.
T Consensus 760 -~~~~------~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~Lg~------~~sv~~~~wP~~d~~ 813 (880)
T 4arc_A 760 -PTDG------EQDRALMQEALLAVVRMLNPFTPHICFTLWQELKG------EGDIDNAPWPVADEK 813 (880)
T ss_dssp -CCSS------HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC------SSCGGGSCCCCCCHH
T ss_pred -HCCC------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC------CCEEEECCCCCCCHH
T ss_conf -1243------67899999999999999730209999999997289------974785789988977
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=1.00 E-value=1 Score=1197.41 Aligned_cols=671 Identities=23% Similarity=0.373 Sum_probs=558.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 8997367799999999839864588-999992899779998799888624678899999999988379944330356864
Q 001757 146 EYNPSSVEKSWYSWWENSGYFIADN-KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA 224 (1017)
Q Consensus 146 ~y~p~~vE~~w~~~W~~~~~f~~~~-~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~~G~D~~ 224 (1017)
.|+|.++|++||++|+++++|++.. +.++++|++++|||||||.|||||+++++++|+++||+||+||+|+|++|||||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~ 82 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 89978999999999987698146866589999899778999999835124488999999999999659956720621752
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 81489999999999806874334958899999999999999999999886563335783025983459999999999966
Q 001757 225 GIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYK 304 (1017)
Q Consensus 225 Glp~q~~vEk~l~~~~~~~~~~i~~e~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~ 304 (1017)
|+||+..+++ .|.+ +++|++++++.+++||++||+++||+|+++|||+.|+++++|+|.+|++
T Consensus 83 Glpie~~a~k-----~g~~------------~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 145 (878)
T 2v0c_A 83 GLPAENAALK-----FGVH------------PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWE 145 (878)
T ss_dssp SHHHHHHHHH-----TTCC------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-----CCCC------------HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHH
T ss_conf 5899999998-----3999------------9999999999999999996886376777345888999999999999997
Q ss_pred CCCEEECCEEEEECCCCCCCCCCCCCCCCC--C-CCC---------EEEECCCCCCCC---------------------E
Q ss_conf 795999026442117988313543202335--7-774---------067205765431---------------------0
Q 001757 305 EGLIYRDLRLVNWDCVLRTAISDIEVDYVD--I-PKR---------EMRNVPGYEKQV---------------------E 351 (1017)
Q Consensus 305 ~GlIYr~~~~V~Wcp~~~TaLSd~EVe~~e--~-~~~---------t~~~vp~y~~~~---------------------e 351 (1017)
+|+||++.++|||||.|+|+|||.||++.. . .+. .+++++.|.+.+ .
T Consensus 146 kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 146 KGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIG 225 (878)
T ss_dssp TTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHC
T ss_pred CCCEEECCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCEEEEECCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 89989746238873888988689998568775568985178750323676235689999876426797899999998745
Q ss_pred EEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCC----------------------------------
Q ss_conf 0026657432279861399864455423458279975897111122----------------------------------
Q 001757 352 FGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHL---------------------------------- 397 (1017)
Q Consensus 352 ~g~l~~f~~~l~~~~~~i~v~TTrPeTl~g~taiaV~P~d~ry~~l---------------------------------- 397 (1017)
-..-..++|++++++.+|+|||||||||+|++||||||+++++.++
T Consensus 226 ~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 305 (878)
T 2v0c_A 226 RSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGV 305 (878)
T ss_dssp EEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCHHHHCCEEEEECCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 56671599883588856999837844550747999867974320122625689999999997643335553124401347
Q ss_pred -CCCEEECCCCCCCCCEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEEECC---------------CCCCC
Q ss_conf -48766468899831057268523588899830118999955389999809941134179---------------99112
Q 001757 398 -HGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD---------------DGKIN 461 (1017)
Q Consensus 398 -~Gk~~~~P~~~r~~pIi~~~~~Vd~~~GTG~V~~~PaHd~~Dy~~~~~~~L~~i~iid~---------------dG~~~ 461 (1017)
+|++++||++++++||+.+++ |++++|||+||+|||||++||++|++||||++++|+. +|.+.
T Consensus 306 ~~g~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ 384 (878)
T 2v0c_A 306 FLGAYALNPATGERIPIWTADY-VLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMV 384 (878)
T ss_dssp EEEEEEECTTTCCEEEEEECTT-SCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEEC
T ss_pred ECCCEEECCCCCCEEEEEEECC-CCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf 6186897778898768998276-357899860796788987789999985998145557877554311001445770584
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCE
Q ss_conf 58998889977554799999999975972222345555441025999036201332101140689999986211379960
Q 001757 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1017)
Q Consensus 462 ~~~g~~~~G~~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~~~~~a~~~v~~~~~~~i 541 (1017)
|+| .|.||.+++|++.|++.|+++|+... .+
T Consensus 385 -ns~-~~~Gl~~~eA~~~Ii~~L~~~g~~~~-----------------------------------------------~v 415 (878)
T 2v0c_A 385 -NSG-PFDGTESEEGKRKVIAWLEEKGLGKG-----------------------------------------------RV 415 (878)
T ss_dssp -SSG-GGTTCBHHHHHHHHHHHHHHHTSEEE-----------------------------------------------EE
T ss_pred -CCC-CCCCCCHHHHHHHHHHHHHHCCCCCC-----------------------------------------------CE
T ss_conf -377-77995999999999999997799877-----------------------------------------------26
Q ss_pred EEECCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCEECCCCHH------HHCCCCCCCCE--EE---ECCHHHHHHHHH
Q ss_conf 89360208999999830468100200488987682100367301------10158888623--77---067788999974
Q 001757 542 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELGSYNDHW--IV---ARDEKEALAVAN 610 (1017)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~~~~~~~~~~------~~~~~~~~~~w--~~---~~~~~ea~~~~~ 610 (1017)
.+ +++|||||||||||+|||+|||..|+.. ++..-+....+ +. +..+..+..+..
T Consensus 416 ~~--------------rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~ 481 (878)
T 2v0c_A 416 TY--------------RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYE 481 (878)
T ss_dssp EE--------------SCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHE
T ss_pred EE--------------ECCCCHHHCCCCCCCCCCEEEECCCCEEECCHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf 87--------------6321300001456885408998799758567797430020044310336679895564276527
Q ss_pred HHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC------CHHHHHHCCCCCCCEEEC--CCCHHHHHHHHHHHH---
Q ss_conf 524998655335897278885268621000269999------814542088663210012--001199999999965---
Q 001757 611 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD------TDDLKAFYPTSVLETGHD--ILFFWVARMVMLGIK--- 679 (1017)
Q Consensus 611 ~~~~~~~~~l~~~~dvlDtWFdSgl~p~s~~g~p~~------~~d~~~~~P~dl~~~G~D--il~fW~~~~~~~~~~--- 679 (1017)
..||.|+..++|++|||||||||+ ||+..++||.+ ++++++|||+|++++|.| |+|+|++||....+.
T Consensus 482 ~~cp~cg~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g 560 (878)
T 2v0c_A 482 TTCPKCGGPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLG 560 (878)
T ss_dssp EECTTTCSEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCEECCCCCCCCCCCC-CHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 767778876254366434212342-3433025853224656978871689974988356787889999999999998724
Q ss_pred -HCCCCCCEEEEECCEEECC----------------------------------------------CC-------CCCCC
Q ss_conf -2599986089975502388----------------------------------------------99-------52111
Q 001757 680 -LGGEVPFTKVYLHPMIRDA----------------------------------------------HG-------RKMSK 705 (1017)
Q Consensus 680 -l~~~~Pfk~V~~Hg~v~D~----------------------------------------------~G-------~KMSK 705 (1017)
+.++.||++|++||||+|. +| +||||
T Consensus 561 ~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSK 640 (878)
T 2v0c_A 561 MVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSK 640 (878)
T ss_dssp SCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSG
T ss_pred CCCCCCCHHHHEECCEEECCCEECCCCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHC
T ss_conf 03578753745336648666344166665431000332222223467302210135543200025799702456787621
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 48950382101026550557887430999947899987136788999988779137899997526777644442788899
Q 001757 706 SLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1017)
Q Consensus 706 SlGNvIdP~dii~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~~Dinf~~~~i~~ 785 (1017)
|+||+|+|.++|+ +||||++|||+++.++.++|++|+.+.+.+
T Consensus 641 SkGNvVdP~diI~-------------------------------------~yGADalRl~ll~~~~~~~D~~fs~~~v~~ 683 (878)
T 2v0c_A 641 SKGNGVMVGPFVK-------------------------------------EQGADIARITILFAAPPENEMVWTEEGVQG 683 (878)
T ss_dssp GGTCCCBHHHHHH-------------------------------------HSCHHHHHHHHHHHSCTTSCEEECHHHHHH
T ss_pred CCCCCCCHHHHHH-------------------------------------HCCCCHHHHHHHCCCCCCCCCEECHHHHHH
T ss_conf 6787356899998-------------------------------------709318999986058977786158999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999876208999999899999999305999999999999999850047989999999999876575899
Q 001757 786 YRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVF 865 (1017)
Q Consensus 786 ~r~f~nkl~N~~rf~l~~l~~~f~p~~~~~~~~~~~~D~wils~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Y 865 (1017)
.++|++++||++++....+..... ......++..|+|++++++.+++.+.++|++|+|+.|++.+++|+ ++++. |
T Consensus 684 ~~~~l~Rl~n~~~~~~~~~~~~~~---~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~-~~l~k-~ 758 (878)
T 2v0c_A 684 AWRFLNRIYRRVAEDREALLETSG---VFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NALYE-Y 758 (878)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC---CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHH-H
T ss_conf 999999999999999851565545---567443898899999999999999999997056999999999999-99865-2
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHH
Q ss_conf 98604643699941077799999999999999999960211489999998689999999988714207999887889868
Q 001757 866 IEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDER 945 (1017)
Q Consensus 866 ie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~a~~P~~~~~~~d~~ 945 (1017)
.+. + .. +.+|+.+|+.+++||+|||||+|||||++|+ .+||+.++||++++.+.
T Consensus 759 ~~~-------~-~~--------~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-------~~sv~~~~wP~~d~~~l--- 812 (878)
T 2v0c_A 759 RKD-------R-PV--------TPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-------PDSLFEAGWPELDEKAL--- 812 (878)
T ss_dssp HHH-------C-CS--------CHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-------SSCGGGSCCCCCCGGGG---
T ss_pred CCC-------C-HH--------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC-------CCCEEECCCCCCCHHHH---
T ss_conf 101-------2-36--------7999999999999973300599999999728-------88534057998997887---
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999998
Q 001757 946 AEFEMDLVESTVRCIRSLRAE 966 (1017)
Q Consensus 946 ~e~~~e~i~~ii~~iRslr~~ 966 (1017)
.+..++.+.++++++|.....
T Consensus 813 ~~~~~~~~vqvngkvR~~i~v 833 (878)
T 2v0c_A 813 EKDVVEVAVQVNGAVAGTIHI 833 (878)
T ss_dssp C--------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 798889999607998877435
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=1170.57 Aligned_cols=682 Identities=23% Similarity=0.348 Sum_probs=564.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 1899736779999999983986458899--99928997799987998886246788999999999883799443303568
Q 001757 145 KEYNPSSVEKSWYSWWENSGYFIADNKS--SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1017)
Q Consensus 145 ~~y~p~~vE~~w~~~W~~~~~f~~~~~~--~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~~G~D 222 (1017)
..|+|.++|++||++|+++++|++..+. ++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 98997887799999998679801470023789828998589988899825521257889999999982898507677358
Q ss_pred CCCHHHHHHHHHHHH-----HHHCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHHH
Q ss_conf 648148999999999-----980687433495889--999999999999999999988656333578302598--34599
Q 001757 223 HAGIATQVVVEKKLM-----RERKLTRHDIGREQF--VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--EKRSK 293 (1017)
Q Consensus 223 ~~Glp~q~~vEk~l~-----~~~~~~~~~i~~e~f--~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d--~~~~~ 293 (1017)
|||+|++..+++... .+.-...+.+.++++ ...|++|++++.+.+++||++||+++||+++|+||| +.|++
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~ 161 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEECCCCHHHHH
T ss_conf 98976899999850367138999998709977787878879999999999999999981858836996076578667999
Q ss_pred HHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEEEECCCCC--CEEEE
Q ss_conf 9999999996679599902644211798831354320233577740672057654310002665743227986--13998
Q 001757 294 AVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL--GEIVV 371 (1017)
Q Consensus 294 ~v~~~F~~L~~~GlIYr~~~~V~Wcp~~~TaLSd~EVe~~e~~~~t~~~vp~y~~~~e~g~l~~f~~~l~~~~--~~i~v 371 (1017)
+++|+|.+|+++|+|||+.++|+|||.|+|+|||+||++.+.... +..+.++|++.+++ .+++|
T Consensus 162 ~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~--------------~~~~~v~f~~~~~~~~~~l~v 227 (810)
T 1wkb_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPI--------------LDYIIIKFELRENGEVIYLPA 227 (810)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCE--------------EEEEEEEEECCSSCSCCEEEE
T ss_pred HHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCC--------------CEEEEEEEECCCCCCCEEEEE
T ss_conf 999999999987998987743212587588952878845988765--------------414899997068877569999
Q ss_pred EECCCCCCCCCCEEEECCCC-------------C------------CC-------------CCCCCCEEECCCCCCCCCE
Q ss_conf 64455423458279975897-------------1------------11-------------1224876646889983105
Q 001757 372 ATTRVETMLGDTAIAIHPED-------------A------------RY-------------SHLHGKFAIHPFNGRKIPI 413 (1017)
Q Consensus 372 ~TTrPeTl~g~taiaV~P~d-------------~------------ry-------------~~l~Gk~~~~P~~~r~~pI 413 (1017)
||||||||+||+||||||+. + +| ++|+|++++||++++.+||
T Consensus 228 ~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi 307 (810)
T 1wkb_A 228 ATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVII 307 (810)
T ss_dssp EESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEE
T ss_pred ECCCCHHHHHHHEEEECCCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCEEEEEEEECHHHCCCEEECCCCCCEEEE
T ss_conf 83884376544179988998479999469875246641899999998540463999999804406998878999973579
Q ss_pred EECCCCCCCCCCCCCEECCCCCCCCHHHHH----------HHHCCC--------EEEEECC-------------------
Q ss_conf 726852358889983011899995538999----------980994--------1134179-------------------
Q 001757 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVG----------KRHNLE--------FINIFTD------------------- 456 (1017)
Q Consensus 414 i~~~~~Vd~~~GTG~V~~~PaHd~~Dy~~~----------~~~~L~--------~i~iid~------------------- 456 (1017)
+++++ |++++|||+||+|||||++||+++ ++|||+ ++++|+.
T Consensus 308 ~~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~ 386 (810)
T 1wkb_A 308 LPAEF-VDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKS 386 (810)
T ss_dssp EECTT-SCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCC
T ss_pred EECCC-CCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCCCC
T ss_conf 84482-64898830388578799889999875121145798729970212555612123157755431233333216777
Q ss_pred --------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE-CC
Q ss_conf --------------------991125899888997755479999999997597222234555544102599903620-13
Q 001757 457 --------------------DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPM-IK 515 (1017)
Q Consensus 457 --------------------dG~~~~~~g~~~~G~~~~~ar~~vi~~L~~~gl~~~~~~~~~~~p~c~Rs~~~i~~~-~~ 515 (1017)
+|+|+ +| +|+|+.+++|++.|++.|++.|++....++.| +|+|||||.+++++ ++
T Consensus 387 ~~d~~~~~~~~~~~~~~~~~~G~~~--~g-~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~ 462 (810)
T 1wkb_A 387 QKDKEKLEQATKTIYKAEYHKGIFK--VP-PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIH 462 (810)
T ss_dssp CTTCSCTHHHHHHHHHHHHHSCEEC--SG-GGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEE--CC-CCCCEEHHHHHHHHHHHHHHCCCEEEEEECCC-CCCCCCCCCEEEEEECC
T ss_conf 3204566666666543025683694--25-74982889869999999995897266776488-97488999879997257
Q ss_pred CCCEEECCH--HHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCCCC---CEECCCCHHHHCCC
Q ss_conf 321011406--8999998621137996089360208999999830468100200488987682---10036730110158
Q 001757 516 PQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDELKELG 590 (1017)
Q Consensus 516 ~QWFi~~~~--~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRqr~WG~pIP~---~~~~~~~~~~~~~~ 590 (1017)
+|||+++++ +++.+++++ ++++|+|+..++++.+||++++||||||||+||+|||+ |.+.. ..++.
T Consensus 463 ~qwF~~~~~~~~~~~~l~~~-----~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~----~~~~~ 533 (810)
T 1wkb_A 463 DQWFIDYGNPEWKEKARKAL-----ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIES----LSDST 533 (810)
T ss_dssp EEEEECTTCHHHHHHHHHHH-----HTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECT----TTSSS
T ss_pred CCEEEECCHHHHHHHHHHHH-----CCCEEECCCHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCC----CCCCC
T ss_conf 74258658177799998603-----3558987000144898863256731455688887288676600256----77870
Q ss_pred CCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC----CCC-C-CCCCCCCCC-----CHHHHHHCCCCCC
Q ss_conf 8886237706778899997452499865533589727888526----862-1-000269999-----8145420886632
Q 001757 591 SYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSS----GLF-P-LSVLGWPDD-----TDDLKAFYPTSVL 659 (1017)
Q Consensus 591 ~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~~~dvlDtWFdS----gl~-p-~s~~g~p~~-----~~d~~~~~P~dl~ 659 (1017)
.|...+.+.+..+++ ...++.... ...++++|+||.+ |.+ + ....|||.+ +++|++|||+|++
T Consensus 534 iYv~~~~~~~~~~~~----~~~~~~~~~--~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~ 607 (810)
T 1wkb_A 534 IYMAYYTISRHINKL----RQEGKLDPE--KLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWR 607 (810)
T ss_dssp SHHHHHHHHHHHHHH----HHTTCCCGG--GCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEE
T ss_pred EEEEHHHHHHHHHHH----HHHCCCCHH--HCCCCCEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 464123217889876----765399978--94954204640166566760006454099889997628998722884487
Q ss_pred CEEECCCCHHHHHHHHHHHHHCCCCCC-EEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHH
Q ss_conf 100120011999999999652599986-0899755023889952111489503821010265505578874309999478
Q 001757 660 ETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKE 738 (1017)
Q Consensus 660 ~~G~Dil~fW~~~~~~~~~~l~~~~Pf-k~V~~Hg~v~D~~G~KMSKSlGNvIdP~dii~g~~l~~l~~~l~~~nl~~~e 738 (1017)
++|+||+|||...+++.+..+.+..|+ +.+++||||++ +|+|||||+||||+|.++|+
T Consensus 608 ~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~-------------------- 666 (810)
T 1wkb_A 608 CSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIE-------------------- 666 (810)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHH--------------------
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEE-CCEEHHHCCCCCCCHHHHHH--------------------
T ss_conf 303041200899999999997296523657999769984-77041211788389899987--------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99987136788999988779137899997526777644442788899999999999999998762089999998999999
Q 001757 739 LEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHN 818 (1017)
Q Consensus 739 ~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~~Dinf~~~~i~~~r~f~nkl~N~~rf~l~~l~~~f~p~~~~~~~~ 818 (1017)
+||+|++||||++.++.++|++|+.+.+.+++++++++||+++++.+.. .|. ...
T Consensus 667 -----------------~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~----~~~----~~~ 721 (810)
T 1wkb_A 667 -----------------ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE----VKG----NVE 721 (810)
T ss_dssp -----------------HHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC----CCS----CCC
T ss_pred -----------------HCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC----CCC----CCC
T ss_conf -----------------7296899999984689888853388999999999999999999987356----765----332
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH-HHHHHHHHHH
Q ss_conf 993059999999999999998500479899999999998765758999860464369994107779999-9999999999
Q 001757 819 LPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAA-QHVLWVCLET 897 (1017)
Q Consensus 819 ~~~~D~wils~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~l~~~~~~~~~~r~~a-~~~L~~~l~~ 897 (1017)
....|+|++++++.+++.+.++|++|+|+.|+.+++.+++ ..+|+|++.+|+. + . ++ +.+|+.+++.
T Consensus 722 ~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~-~~~n~yi~~~k~~---~------~--~~~~~~l~~~l~~ 789 (810)
T 1wkb_A 722 LKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM-NDLRWYLRRTEGR---D------D--EAKRYVLRTLADV 789 (810)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH-HHHHHHHHHTTTC---C------C--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHCCC---C------H--HHHHHHHHHHHHH
T ss_conf 7888999999999999999999982499999999999999-9999999874572---1------5--5799999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHCC
Q ss_conf 999960211489999998689
Q 001757 898 GLRLLHPFMPFVTEELWQRLP 918 (1017)
Q Consensus 898 ~l~LL~PfmPfitEelwq~L~ 918 (1017)
+++||+|||||+|||||++|+
T Consensus 790 l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 790 WVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999985562088999999639
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=1.00 E-value=1 Score=796.51 Aligned_cols=473 Identities=20% Similarity=0.247 Sum_probs=392.7
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99992899779998799888624678899999999988379944330356864814899999999998068743349588
Q 001757 172 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQ 251 (1017)
Q Consensus 172 ~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vEk~l~~~~~~~~~~i~~e~ 251 (1017)
+..++|+|++|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||..+++ +|+++
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k-----~g~~~------- 73 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ-----KQVSP------- 73 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH-----TTSCH-------
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH-----CCCCH-------
T ss_conf 889988983899888985456778999999999999994199740448327376999999998-----49999-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCCCC
Q ss_conf 99999999999999999999886563335783025983459999999999966795999026442117988313543202
Q 001757 252 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 331 (1017)
Q Consensus 252 f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIYr~~~~V~Wcp~~~TaLSd~EVe 331 (1017)
++|++++++.+++|+++||+++|| ++.|||+.|.++|+++|.+|+++|+||++.++|+|||.|+|+|+|.||+
T Consensus 74 -----~e~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~ 146 (542)
T 3u1f_A 74 -----YDFTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNIT 146 (542)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCHHHHHH
T ss_conf -----999999999999999993994675--8647988999999999999965696796011488604676300123420
Q ss_pred CCCCCCCEEEECCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 33577740672057654310002665743227986139986445542345827997589711112248766468899831
Q 001757 332 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 411 (1017)
Q Consensus 332 ~~e~~~~t~~~vp~y~~~~e~g~l~~f~~~l~~~~~~i~v~TTrPeTl~g~taiaV~P~d~ry~~l~Gk~~~~P~~~r~~ 411 (1017)
..
T Consensus 147 ~~------------------------------------------------------------------------------ 148 (542)
T 3u1f_A 147 DG------------------------------------------------------------------------------ 148 (542)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
T ss_conf 11------------------------------------------------------------------------------
Q ss_pred CEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 05726852358889983011899995538999980994113417999112589988899775547999999999759722
Q 001757 412 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 491 (1017)
Q Consensus 412 pIi~~~~~Vd~~~GTG~V~~~PaHd~~Dy~~~~~~~L~~i~iid~dG~~~~~~g~~~~G~~~~~ar~~vi~~L~~~gl~~ 491 (1017)
++ .+|
T Consensus 149 ---~~----------------------------------------------~~g-------------------------- 153 (542)
T 3u1f_A 149 ---VD----------------------------------------------KDG-------------------------- 153 (542)
T ss_dssp ---EC----------------------------------------------TTS--------------------------
T ss_pred ---CC----------------------------------------------CCC--------------------------
T ss_conf ---13----------------------------------------------467--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHH-CCCCCCEEECC-
Q ss_conf 2234555544102599903620133210114068999998621137996089360208999999830-46810020048-
Q 001757 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQLW- 569 (1017)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRqr~- 569 (1017)
+.+++|+|||++++++.++|||++++++++++++++ +++...+.|+..++.+.+|+++ ++||||||||+
T Consensus 154 ------~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~ 224 (542)
T 3u1f_A 154 ------NPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWY---HANPGCIVPEFRRREVIRAVEKGLPDLSVSRARAT 224 (542)
T ss_dssp ------CEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHH---HHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGG
T ss_pred ------CCCCCCCCCCCCCEEECCCCCEECCHHHHHHHHHHH---HHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf ------654555789980024315421001215789998777---50466668724567675545405644674555567
Q ss_pred ---CCCCCCCCEECCCCHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-
Q ss_conf ---8987682100367301101588886237706778899997452499865533589727888526862100026999-
Q 001757 570 ---WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD- 645 (1017)
Q Consensus 570 ---WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~~~dvlDtWFdSgl~p~s~~g~p~- 645 (1017)
||+|||.+- ..++++|||+...+++..+++.
T Consensus 225 ~~~WGipiP~~~---------------------------------------------~~~~~vw~da~~~~~~~~~~~~~ 259 (542)
T 3u1f_A 225 LHNWAIPVPGNP---------------------------------------------DHXVYVWLDALTNYLTGSRLRVD 259 (542)
T ss_dssp GTTCSCEETTEE---------------------------------------------EEEECHHHHHHTHHHHHHTEEEC
T ss_pred CCCCCCCCCCCC---------------------------------------------CEEEEEEECCCHHHHHHHHCCCC
T ss_conf 677898658886---------------------------------------------72025652031011124431533
Q ss_pred ---------CCHHHHHHCCCCCCCEEECCCCH----HHHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf ---------98145420886632100120011----99999999965259998608997550238899521114895038
Q 001757 646 ---------DTDDLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVID 712 (1017)
Q Consensus 646 ---------~~~d~~~~~P~dl~~~G~Dil~f----W~~~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvId 712 (1017)
+..+....||+|++.+|+||++| |+++|++. |..|++.|++||++. .+|+|||||+||||+
T Consensus 260 ~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~-----g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~ 333 (542)
T 3u1f_A 260 ESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSA-----GLPLPKKIVAHGWWT-KDRKKISKSLGNVFD 333 (542)
T ss_dssp TTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCCE-ETTBCCBTTTTBCCC
T ss_pred CCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHH-----CCCCCCEECCCCCEE-CCCCEECCCCCCCCC
T ss_conf 45886445420566607952188723005633531148998763-----135652010364161-488350304688788
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH--HHH
Q ss_conf 210102655055788743099994789998713678899998877913789999752677764444278889999--999
Q 001757 713 PLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWC 790 (1017)
Q Consensus 713 P~dii~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~~Dinf~~~~i~~~r--~f~ 790 (1017)
|.++|+ +||+|+|||||++.++.++|++|+.+.+.+.. .|+
T Consensus 334 p~~~i~-------------------------------------~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~ 376 (542)
T 3u1f_A 334 PVEKAE-------------------------------------EFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELA 376 (542)
T ss_dssp HHHHHH-------------------------------------HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTT
T ss_pred HHHHHH-------------------------------------HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 567876-------------------------------------0693088999985286334654668887887655777
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999987620899999989999999930599999999999999985004798999999999987657589998604
Q 001757 791 NKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIK 870 (1017)
Q Consensus 791 nkl~N~~rf~l~~l~~~f~p~~~~~~~~~~~~D~wils~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K 870 (1017)
|+|||++++++....+ +... ......++..|+|++++++.+++.+.++|++|+|+.|++.+++|+ ++||+|++..|
T Consensus 377 n~l~N~~~r~~~~~~~-~~~~-~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~Y~~~~~ 452 (542)
T 3u1f_A 377 DTLGNLVMRCTSAKIN-VNGE-WPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINAYVTDMA 452 (542)
T ss_dssp TTHHHHHHHHHCTTTS-TTSB-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHC-CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCC
T ss_conf 7787999999975110-2577-786200027799999876424777777888789999999999999--99999999658
Q ss_pred CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
Q ss_conf 643-69994107779999999999999999996021148999999868999
Q 001757 871 PYF-AGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1017)
Q Consensus 871 ~~l-~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~~ 920 (1017)
||. ..++++ +.++++.++..+++.+++||||||||+||||||+|+..
T Consensus 453 pw~l~k~d~~---~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~ 500 (542)
T 3u1f_A 453 PWKLVKTDPE---RLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVP 500 (542)
T ss_dssp HHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred CHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6644358999---99999999999999999999869679999999987999
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=1.00 E-value=1 Score=796.40 Aligned_cols=492 Identities=19% Similarity=0.269 Sum_probs=405.7
Q ss_pred CCEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 92899779998799888624678-89999999998837994433035686481489999999999806874334958899
Q 001757 175 PSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1017)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~-~~i~Dii~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vEk~l~~~~~~~~~~i~~e~f~ 253 (1017)
++|+|++|||||||.|||||+++ ++++|+++||+||+||+|+|++||||||+|||..+++. |++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~-----G~~---------- 66 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE-----GRS---------- 66 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-----TCC----------
T ss_pred CCEEEECCCCCCCCCHHHCHHHCCHHHHHHHHHHHHHCCCCEEECCEECCCCHHHHHHHHHC-----CCC----------
T ss_conf 87899538988998400030211189999999999966996571360378878999999985-----999----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999988656333578302598345999999999996679599902644211798831354320233
Q 001757 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1017)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIYr~~~~V~Wcp~~~TaLSd~EVe~~ 333 (1017)
|++|++++++.++++|++||+++|| +++|+|+.|.++++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+.
T Consensus 67 --p~e~~~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g- 141 (722)
T 1rqg_A 67 --PREIVDEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG- 141 (722)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS-
T ss_pred --HHHHHHHHHHHHHHHHHHHCCCCCC--CEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCHHHCCC-
T ss_conf --9999999999999999980997899--72688888999999999999978978941166602188896854343033-
Q ss_pred CCCCCEEEECCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCE
Q ss_conf 57774067205765431000266574322798613998644554234582799758971111224876646889983105
Q 001757 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1017)
Q Consensus 334 e~~~~t~~~vp~y~~~~e~g~l~~f~~~l~~~~~~i~v~TTrPeTl~g~taiaV~P~d~ry~~l~Gk~~~~P~~~r~~pI 413 (1017)
.+|.|+.
T Consensus 142 ---------------------------------------------------------------------tcP~c~~---- 148 (722)
T 1rqg_A 142 ---------------------------------------------------------------------TCPYCGA---- 148 (722)
T ss_dssp ---------------------------------------------------------------------BCSSSCC----
T ss_pred ---------------------------------------------------------------------CCCCCCC----
T ss_conf ---------------------------------------------------------------------2676677----
Q ss_pred EECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 72685235888998301189999553899998099411341799911258998889977554799999999975972222
Q 001757 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1017)
Q Consensus 414 i~~~~~Vd~~~GTG~V~~~PaHd~~Dy~~~~~~~L~~i~iid~dG~~~~~~g~~~~G~~~~~ar~~vi~~L~~~gl~~~~ 493 (1017)
. +..|..|++||..+
T Consensus 149 ------------------------~----------------~~~Gd~c~~~G~~l------------------------- 163 (722)
T 1rqg_A 149 ------------------------E----------------DQKGDQCEVCGRPL------------------------- 163 (722)
T ss_dssp ------------------------S----------------CCCTTTCSSSCCCC-------------------------
T ss_pred ------------------------C----------------CCCCCHHHHCCCCC-------------------------
T ss_conf ------------------------5----------------67863554136626-------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHH-HHCCCCCCEEECCCCC
Q ss_conf 345555441025999036201332101140689999986211379960893602089999998-3046810020048898
Q 001757 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL-EAIRDWCVSRQLWWGH 572 (1017)
Q Consensus 494 ~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl-~~l~DWcISRqr~WG~ 572 (1017)
.+..+.+|+|||||++++++.++|||++++++++.+++++ ++. . .|+..++++.+|| ++++|||||||++||+
T Consensus 164 ~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~---~~~--~-wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~ 237 (722)
T 1rqg_A 164 TPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWI---EKQ--P-WKPNVKNMVLSWIEEGLEERAITRDLNWGI 237 (722)
T ss_dssp CTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHH---HSS--C-CCHHHHHHHHHHHTTCCCCEECEECCSSSC
T ss_pred CHHHCCCCCCCCCCCEEEEEEECCEEEEHHHHHHHHHHHH---HHC--C-CCHHHHHHHHHHHHCCCCCCCEECCCCCCC
T ss_conf 8555038864687967699981528998599999999999---858--9-998999999999977986553241356860
Q ss_pred CCCCCEECCCCHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCC---CCH
Q ss_conf 7682100367301101588886237706778899997452499865533589727888526862100026-999---981
Q 001757 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLG-WPD---DTD 648 (1017)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~~~dvlDtWFdSgl~p~s~~g-~p~---~~~ 648 (1017)
|||+|++. -+.++++||||+.+.+++..+ |+. ..+
T Consensus 238 piP~~~~g-----------------------------------------~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~ 276 (722)
T 1rqg_A 238 PVPLDEED-----------------------------------------MKGKVLYVWFEAPIGYISITIEHFKRIGKPN 276 (722)
T ss_dssp BCSCCCSS-----------------------------------------STTCEECHHHHGGGHHHHHHHHHHHHTTCTT
T ss_pred CCCCCCCC-----------------------------------------CCCCEEEEEECCCCCHHHHHHHHHHHCCCCH
T ss_conf 55862468-----------------------------------------9998899973242111344778776409801
Q ss_pred HHHHHCCC-C-----CCCEEECCCCH----HHHHHHHHHH-----HHCC-CCCCEEEEECCEEECCCCCCCCCCCCCCCC
Q ss_conf 45420886-6-----32100120011----9999999996-----5259-998608997550238899521114895038
Q 001757 649 DLKAFYPT-S-----VLETGHDILFF----WVARMVMLGI-----KLGG-EVPFTKVYLHPMIRDAHGRKMSKSLGNVID 712 (1017)
Q Consensus 649 d~~~~~P~-d-----l~~~G~Dil~f----W~~~~~~~~~-----~l~~-~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvId 712 (1017)
+|+.|||. + ++++|+||++| |++.++..+. .+.| ..| ++|++||||++ +|+|||||+||+|+
T Consensus 277 ~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~ 354 (722)
T 1rqg_A 277 EWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIW 354 (722)
T ss_dssp TTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCB
T ss_pred HHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEEEEEE-CCEEEEEECCCCCC
T ss_conf 88763488899971688736654543032428999605887443324698888-88998506994-88364000897687
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HH
Q ss_conf 2101026550557887430999947899987136788999988779137899997526777644442788899999--99
Q 001757 713 PLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WC 790 (1017)
Q Consensus 713 P~dii~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~~Dinf~~~~i~~~r~--f~ 790 (1017)
|.++|+ +||+|++||||++.++.++|++|+.+.+....+ ++
T Consensus 355 p~d~i~-------------------------------------~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~ 397 (722)
T 1rqg_A 355 VHEFLD-------------------------------------VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELV 397 (722)
T ss_dssp HHHHTT-------------------------------------TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTT
T ss_pred HHHHHH-------------------------------------HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999998-------------------------------------6494699999984499888883588999999889999
Q ss_pred HHHHHHHHHHH----HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987----62089999998999999993059999999999999998500479899999999998765758999
Q 001757 791 NKLWNAVRFSM----SKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFI 866 (1017)
Q Consensus 791 nkl~N~~rf~l----~~l~~~f~p~~~~~~~~~~~~D~wils~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yi 866 (1017)
|+++|++.++. .++. +..|. ...+...|+|++++++.++..+.++|++|+|+.|++.+++|+ ++||+|+
T Consensus 398 ~~l~N~~~R~~~~~~k~~~-~~~~~----~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~--~~~n~Yi 470 (722)
T 1rqg_A 398 NNLGNFVHRALTFVNRYFD-GVVPE----RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYF 470 (722)
T ss_dssp TTHHHHHHHHHHHHHHHST-TBCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-CCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHH
T ss_conf 9999999999999998537-88888----655788899999999999999999998357999999999999--9999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
Q ss_conf 86046436999410777999999999999999999602114899999986899
Q 001757 867 EAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 867 e~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
+..|||....+.. .....+..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 471 ~~~kpw~~~k~~~--~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~ 521 (722)
T 1rqg_A 471 DHKQPWKTAKEDK--VRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL 521 (722)
T ss_dssp HTTCHHHHTTTCH--HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHCCCHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 8547253237899--99999999999999999998612254789999997499
No 10
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=1.00 E-value=1 Score=752.06 Aligned_cols=490 Identities=17% Similarity=0.253 Sum_probs=413.2
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999289977999879988862467889999999998837994433035686481489999999999806874334958
Q 001757 171 KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGRE 250 (1017)
Q Consensus 171 ~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vEk~l~~~~~~~~~~i~~e 250 (1017)
..++++|++++|||||||.|||||+++++++|+++||+||+||+|+|++|||+||+||+..+++ .|.++
T Consensus 14 ~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~------ 82 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-----LGITP------ 82 (560)
T ss_dssp ---CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-----HTSCH------
T ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHH-----HCCCH------
T ss_conf 8999848996899989998465467999999999999997098178742146768099999998-----19899------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCCC
Q ss_conf 89999999999999999999988656333578302598345999999999996679599902644211798831354320
Q 001757 251 QFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV 330 (1017)
Q Consensus 251 ~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIYr~~~~V~Wcp~~~TaLSd~EV 330 (1017)
.++++++.+.+++++++||+++| +++.|+++.|.+.++++|.+|+++|+||++.+.|+||+.|+|+|++.+|
T Consensus 83 ------~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v 154 (560)
T 3h99_A 83 ------EQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV 154 (560)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGE
T ss_pred ------HHHHHHHHHHHHHHHHHCCCCCC--CCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEECCHHC
T ss_conf ------99999999999999998399988--8432798789999999999999889989752468644765765042212
Q ss_pred CCCCCCCCEEEECCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 23357774067205765431000266574322798613998644554234582799758971111224876646889983
Q 001757 331 DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRK 410 (1017)
Q Consensus 331 e~~e~~~~t~~~vp~y~~~~e~g~l~~f~~~l~~~~~~i~v~TTrPeTl~g~taiaV~P~d~ry~~l~Gk~~~~P~~~r~ 410 (1017)
+. .+|.|++.
T Consensus 155 ~g----------------------------------------------------------------------~cp~c~~~ 164 (560)
T 3h99_A 155 KG----------------------------------------------------------------------TCPKCKSP 164 (560)
T ss_dssp EE----------------------------------------------------------------------ECTTTCCS
T ss_pred CC----------------------------------------------------------------------CCCCCCCC
T ss_conf 78----------------------------------------------------------------------78888885
Q ss_pred CCEEECCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 10572685235888998301189999553899998099411341799911258998889977554799999999975972
Q 001757 411 IPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLY 490 (1017)
Q Consensus 411 ~pIi~~~~~Vd~~~GTG~V~~~PaHd~~Dy~~~~~~~L~~i~iid~dG~~~~~~g~~~~G~~~~~ar~~vi~~L~~~gl~ 490 (1017)
++.|..|++||..+.
T Consensus 165 --------------------------------------------~~~gd~ce~cg~~~~--------------------- 179 (560)
T 3h99_A 165 --------------------------------------------DQYGDNCEVCGATYS--------------------- 179 (560)
T ss_dssp --------------------------------------------SEETTBCTTTCCBCC---------------------
T ss_pred --------------------------------------------CCCCCHHHHCCCCCC---------------------
T ss_conf --------------------------------------------455631022045578---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHH-HCCCCCCEEEC-
Q ss_conf 2223455554410259990362013321011406899999862113799608936020899999983-04681002004-
Q 001757 491 RGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQL- 568 (1017)
Q Consensus 491 ~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~~~~~a~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRqr- 568 (1017)
+.++..|+|+|||++++++..+|||++++++++.+++++ +++ .+|+..++.+.+||+ +++|||||||+
T Consensus 180 ----~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~~ 249 (560)
T 3h99_A 180 ----PTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWT---RSG---ALQEQVANKMQEWFESGLQQWDISRDAP 249 (560)
T ss_dssp ----GGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHH---HTS---CSCHHHHHHHHHHHHHCCCCEECEEESS
T ss_pred ----HHHHCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHHHHH---HHC---CCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf ----465027755557888658743628988799799999999---818---9898999999999856998877556688
Q ss_pred CCCCCCCCCEECCCCHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCC-
Q ss_conf 8898768210036730110158888623770677889999745249986553358972788852686210002-69999-
Q 001757 569 WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GWPDD- 646 (1017)
Q Consensus 569 ~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~l~~~~dvlDtWFdSgl~p~s~~-g~p~~- 646 (1017)
|||+|||.. +.+|+|||||+.+.|++.+ +|+++
T Consensus 250 ~WG~~iP~~---------------------------------------------~~~viyvW~da~~~y~s~~~~~~~~~ 284 (560)
T 3h99_A 250 YFGFEIPNA---------------------------------------------PGKYFYVWLDAPIGLMGSFKNLCDKR 284 (560)
T ss_dssp CSSCBCTTC---------------------------------------------TTEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEECCCC---------------------------------------------CCCEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 678567998---------------------------------------------99658968565041999998876514
Q ss_pred --CHHHHHHCCCC-----CCCEEECCCC----HHHHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf --81454208866-----3210012001----199999999965259998608997550238899521114895038210
Q 001757 647 --TDDLKAFYPTS-----VLETGHDILF----FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 715 (1017)
Q Consensus 647 --~~d~~~~~P~d-----l~~~G~Dil~----fW~~~~~~~~~~l~~~~Pfk~V~~Hg~v~D~~G~KMSKSlGNvIdP~d 715 (1017)
..+|+.|||.| ++++|+||++ ||+++|++++. ..| ++|++||||++ +|+|||||+||||+|.|
T Consensus 285 ~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~----~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d 358 (560)
T 3h99_A 285 GDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNF----RKP-SNLFVHGYVTV-NGAKMSKSRGTFIKAST 358 (560)
T ss_dssp TCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB----CCC-SEEEEECCEEE-TTEECCTTTTCCCBHHH
T ss_pred CCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC----CCC-CEEEEEEEEEE-CCEECCCCCCCCCCHHH
T ss_conf 8721488727677885268885044240289999999996799----998-68998767985-78020460898688999
Q ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCHHHHHH--HHHHHHH
Q ss_conf 1026550557887430999947899987136788999988779137899997526777-644442788899--9999999
Q 001757 716 VINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQS-DKINLDIQRVVG--YRQWCNK 792 (1017)
Q Consensus 716 ii~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~f~~gi~~~GaDalR~~L~s~~~~~-~Dinf~~~~i~~--~r~f~nk 792 (1017)
+|+ +||+|++||||++.++.+ +|++|+.+.+.. .++++|+
T Consensus 359 ~i~-------------------------------------~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~ 401 (560)
T 3h99_A 359 WLN-------------------------------------HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNK 401 (560)
T ss_dssp HHH-------------------------------------HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCC
T ss_pred HHH-------------------------------------HCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 998-------------------------------------7681899999997489987788769999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999998762089999998999999993059999999999999998500479899999999998765758999860464
Q 001757 793 LWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPY 872 (1017)
Q Consensus 793 l~N~~rf~l~~l~~~f~p~~~~~~~~~~~~D~wils~L~~~i~~v~~a~e~~~f~~a~~~i~~f~~~~l~d~Yie~~K~~ 872 (1017)
+||++.+++..+...+... . .....|+|++++++.+++.+.++|++|+|+.|++.+++|+ ++||+|++.+|+|
T Consensus 402 l~n~~~R~~~~~~~~~~~~--~---~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw 474 (560)
T 3h99_A 402 VVNLASRNAGFINKRFDGV--L---ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAPW 474 (560)
T ss_dssp CTHHHHTTHHHHHHHSTTB--C---CSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHCCCC--C---CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHCCCH
T ss_conf 9999999999998853898--8---9861359999999999999999997558999999999999--9999999826856
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
Q ss_conf 36999410777999999999999999999602114899999986899
Q 001757 873 FAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1017)
Q Consensus 873 l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEelwq~L~~ 919 (1017)
...+++.....+..+..+++.+|+.+++||+|||||+||+||++|+.
T Consensus 475 ~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~ 521 (560)
T 3h99_A 475 VVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521 (560)
T ss_dssp HHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 55178676999999999999999999999823142799999998089
Done!