Query 001758
Match_columns 1017
No_of_seqs 788 out of 3976
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923 mRNA splicing factor A 100.0 5E-116 1E-120 985.0 36.1 585 22-700 260-894 (902)
2 KOG0922 DEAH-box RNA helicase 100.0 6E-115 1E-119 992.3 42.2 570 19-684 43-652 (674)
3 KOG0925 mRNA splicing factor A 100.0 2E-114 4E-119 944.8 38.7 589 22-710 42-688 (699)
4 KOG0924 mRNA splicing factor A 100.0 2E-111 5E-116 946.8 36.8 571 19-684 348-958 (1042)
5 PRK11131 ATP-dependent RNA hel 100.0 1.2E-98 3E-103 935.7 52.5 582 16-684 62-682 (1294)
6 KOG0920 ATP-dependent RNA heli 100.0 2.9E-99 6E-104 907.5 44.4 739 20-910 166-922 (924)
7 COG1643 HrpA HrpA-like helicas 100.0 4.8E-95 1E-99 876.8 45.9 534 15-628 38-585 (845)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.4E-94 5.1E-99 901.0 50.7 577 18-684 57-672 (1283)
9 KOG0926 DEAH-box RNA helicase 100.0 8.8E-89 1.9E-93 775.5 37.2 570 20-681 249-1004(1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.2E-76 4.7E-81 726.7 43.3 440 26-520 1-445 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 9.1E-74 2E-78 705.2 44.0 438 25-517 3-447 (812)
12 KOG0921 Dosage compensation co 100.0 2.1E-55 4.6E-60 506.9 22.3 557 20-630 371-965 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 5.4E-53 1.2E-57 508.7 32.9 394 30-500 167-593 (675)
14 PRK01172 ski2-like helicase; P 100.0 5.9E-38 1.3E-42 387.8 33.5 419 25-504 20-494 (674)
15 PRK02362 ski2-like helicase; P 100.0 1.1E-35 2.4E-40 370.2 42.5 425 27-502 23-514 (737)
16 PRK00254 ski2-like helicase; P 100.0 3.6E-34 7.8E-39 355.8 39.4 433 27-515 23-522 (720)
17 PRK11776 ATP-dependent RNA hel 100.0 3E-34 6.5E-39 340.2 32.7 311 27-403 26-351 (460)
18 KOG0331 ATP-dependent RNA heli 100.0 1.1E-34 2.4E-39 332.8 27.4 316 28-404 114-451 (519)
19 PRK04837 ATP-dependent RNA hel 100.0 6.5E-34 1.4E-38 333.8 32.8 312 27-403 30-364 (423)
20 PTZ00110 helicase; Provisional 100.0 4E-34 8.7E-39 343.7 31.6 316 27-403 152-486 (545)
21 PRK11192 ATP-dependent RNA hel 100.0 8.5E-34 1.8E-38 334.1 33.3 317 27-405 23-356 (434)
22 KOG0330 ATP-dependent RNA heli 100.0 1.2E-34 2.7E-39 312.4 21.2 311 28-402 84-408 (476)
23 PRK10590 ATP-dependent RNA hel 100.0 1.6E-33 3.5E-38 333.1 32.6 312 27-404 23-355 (456)
24 PLN00206 DEAD-box ATP-dependen 100.0 3.5E-33 7.7E-38 334.4 31.1 312 27-403 143-477 (518)
25 PRK11634 ATP-dependent RNA hel 100.0 7E-33 1.5E-37 336.1 32.6 313 26-403 27-354 (629)
26 PRK04537 ATP-dependent RNA hel 100.0 9E-33 2E-37 333.2 31.7 313 27-403 31-366 (572)
27 PTZ00424 helicase 45; Provisio 100.0 1.2E-32 2.6E-37 321.1 30.6 314 28-404 51-377 (401)
28 COG0513 SrmB Superfamily II DN 100.0 1.8E-32 4E-37 326.5 30.0 314 27-401 51-380 (513)
29 PRK01297 ATP-dependent RNA hel 100.0 4.3E-32 9.3E-37 322.8 33.1 308 28-402 110-443 (475)
30 TIGR00614 recQ_fam ATP-depende 100.0 1.9E-31 4.1E-36 316.4 29.6 312 28-404 12-336 (470)
31 PRK11057 ATP-dependent DNA hel 100.0 1.7E-30 3.6E-35 316.5 31.4 309 27-404 25-346 (607)
32 PLN03137 ATP-dependent DNA hel 100.0 8.8E-31 1.9E-35 321.2 28.0 311 28-404 461-790 (1195)
33 COG1204 Superfamily II helicas 100.0 2.7E-31 6E-36 324.7 23.1 423 27-502 31-526 (766)
34 COG1202 Superfamily II helicas 100.0 3.8E-30 8.3E-35 288.0 28.1 438 28-537 217-699 (830)
35 TIGR03817 DECH_helic helicase/ 100.0 2.1E-30 4.5E-35 320.3 27.9 322 27-400 36-385 (742)
36 KOG0345 ATP-dependent RNA heli 100.0 1.7E-30 3.7E-35 286.2 23.7 331 27-417 28-383 (567)
37 PRK13767 ATP-dependent helicas 100.0 5.1E-30 1.1E-34 322.7 30.2 317 28-397 33-396 (876)
38 KOG0342 ATP-dependent RNA heli 100.0 1.6E-30 3.6E-35 288.4 20.0 318 26-402 103-438 (543)
39 KOG0338 ATP-dependent RNA heli 100.0 8.1E-31 1.8E-35 290.1 16.9 317 28-404 204-536 (691)
40 TIGR01389 recQ ATP-dependent D 100.0 2.6E-29 5.7E-34 306.4 31.6 306 28-404 14-334 (591)
41 COG1111 MPH1 ERCC4-like helica 100.0 2.3E-29 4.9E-34 281.6 27.5 355 23-401 11-481 (542)
42 KOG0333 U5 snRNP-like RNA heli 100.0 2.8E-30 6.1E-35 287.1 20.1 306 28-402 268-625 (673)
43 KOG0328 Predicted ATP-dependen 100.0 1.1E-29 2.3E-34 263.5 20.7 313 28-405 50-377 (400)
44 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-29 2.4E-34 283.3 20.6 316 26-403 90-424 (758)
45 KOG0340 ATP-dependent RNA heli 100.0 2.3E-29 5E-34 268.9 21.8 315 28-403 30-363 (442)
46 COG1201 Lhr Lhr-like helicases 100.0 2.2E-28 4.9E-33 295.3 24.3 312 27-398 22-361 (814)
47 TIGR00580 mfd transcription-re 100.0 1E-27 2.3E-32 299.0 29.9 301 26-401 450-770 (926)
48 PRK10917 ATP-dependent DNA hel 100.0 2.8E-27 6E-32 291.3 31.5 300 26-399 260-587 (681)
49 KOG0335 ATP-dependent RNA heli 100.0 2.2E-28 4.8E-33 276.5 19.0 313 27-400 96-443 (482)
50 KOG0336 ATP-dependent RNA heli 100.0 3.1E-28 6.7E-33 263.0 18.2 314 27-404 242-575 (629)
51 KOG0339 ATP-dependent RNA heli 100.0 4.4E-28 9.5E-33 268.0 19.2 313 27-404 245-578 (731)
52 TIGR01587 cas3_core CRISPR-ass 100.0 2.2E-27 4.7E-32 272.8 24.7 297 44-403 1-338 (358)
53 KOG0354 DEAD-box like helicase 100.0 2.4E-27 5.1E-32 279.8 25.1 349 24-401 59-529 (746)
54 KOG0348 ATP-dependent RNA heli 100.0 1.5E-27 3.2E-32 265.8 21.8 338 27-405 159-560 (708)
55 TIGR00643 recG ATP-dependent D 100.0 9.4E-27 2E-31 284.8 30.9 299 26-399 234-564 (630)
56 KOG0332 ATP-dependent RNA heli 100.0 2.8E-27 6E-32 254.3 22.8 316 28-401 113-443 (477)
57 PRK10689 transcription-repair 100.0 9.6E-27 2.1E-31 296.1 30.6 300 26-400 599-918 (1147)
58 KOG0347 RNA helicase [RNA proc 99.9 9E-28 2E-32 268.2 15.2 325 28-402 204-571 (731)
59 TIGR02621 cas3_GSU0051 CRISPR- 99.9 4.9E-26 1.1E-30 276.6 30.5 329 27-426 15-417 (844)
60 COG0514 RecQ Superfamily II DN 99.9 1.7E-26 3.6E-31 270.2 25.1 307 30-404 20-340 (590)
61 PRK09751 putative ATP-dependen 99.9 1.9E-26 4E-31 294.6 26.0 304 47-393 1-375 (1490)
62 KOG0952 DNA/RNA helicase MER3/ 99.9 1.8E-25 3.9E-30 265.5 27.6 449 28-519 111-641 (1230)
63 PHA02558 uvsW UvsW helicase; P 99.9 7.5E-25 1.6E-29 261.7 31.4 316 25-393 112-443 (501)
64 KOG0326 ATP-dependent RNA heli 99.9 8.6E-27 1.9E-31 245.5 12.6 309 29-402 109-430 (459)
65 KOG0341 DEAD-box protein abstr 99.9 4.8E-27 1E-31 252.3 10.5 310 28-401 193-528 (610)
66 KOG0350 DEAD-box ATP-dependent 99.9 1.3E-25 2.8E-30 249.1 19.1 315 28-402 160-541 (620)
67 PRK13766 Hef nuclease; Provisi 99.9 2.3E-24 5E-29 271.5 31.3 357 21-403 9-481 (773)
68 TIGR03158 cas3_cyano CRISPR-as 99.9 2.4E-24 5.1E-29 246.7 27.5 311 31-387 1-357 (357)
69 KOG4284 DEAD box protein [Tran 99.9 3.1E-24 6.8E-29 242.9 20.7 315 29-401 49-379 (980)
70 KOG0346 RNA helicase [RNA proc 99.9 2.1E-24 4.5E-29 236.3 17.2 305 28-401 42-410 (569)
71 TIGR00603 rad25 DNA repair hel 99.9 1.7E-23 3.7E-28 252.3 26.8 326 23-403 251-609 (732)
72 KOG0948 Nuclear exosomal RNA h 99.9 8.2E-24 1.8E-28 243.1 21.3 354 19-401 121-539 (1041)
73 KOG0344 ATP-dependent RNA heli 99.9 1.5E-23 3.2E-28 238.6 18.1 315 29-404 160-498 (593)
74 KOG0334 RNA helicase [RNA proc 99.9 1.6E-23 3.5E-28 251.7 19.2 314 27-402 387-721 (997)
75 KOG0352 ATP-dependent DNA heli 99.9 1.6E-23 3.5E-28 227.9 17.1 319 29-406 22-367 (641)
76 COG1205 Distinct helicase fami 99.9 1E-22 2.2E-27 253.0 25.1 321 26-400 69-421 (851)
77 KOG0327 Translation initiation 99.9 6.1E-23 1.3E-27 223.4 19.8 311 28-406 49-375 (397)
78 KOG0947 Cytoplasmic exosomal R 99.9 4.8E-22 1E-26 233.8 24.9 353 25-401 295-723 (1248)
79 KOG0951 RNA helicase BRR2, DEA 99.9 6.1E-22 1.3E-26 237.7 24.6 419 28-492 310-821 (1674)
80 COG4581 Superfamily II RNA hel 99.9 7.7E-22 1.7E-26 241.7 26.0 358 20-400 112-536 (1041)
81 PRK09401 reverse gyrase; Revie 99.9 1.1E-21 2.4E-26 250.6 25.1 292 26-388 79-430 (1176)
82 PRK05580 primosome assembly pr 99.9 2.3E-21 5E-26 238.2 25.0 325 23-397 140-545 (679)
83 COG1061 SSL2 DNA or RNA helica 99.9 4.7E-21 1E-25 225.0 25.9 331 23-392 32-379 (442)
84 PRK14701 reverse gyrase; Provi 99.9 3.1E-21 6.8E-26 251.2 25.6 315 27-403 79-458 (1638)
85 KOG0351 ATP-dependent DNA heli 99.9 8.7E-22 1.9E-26 243.0 18.9 313 28-406 265-597 (941)
86 TIGR03714 secA2 accessory Sec 99.9 1.5E-20 3.3E-25 226.9 28.1 105 276-402 424-538 (762)
87 COG4098 comFA Superfamily II D 99.9 2.5E-20 5.5E-25 199.3 26.5 301 28-397 98-412 (441)
88 KOG0337 ATP-dependent RNA heli 99.9 7.6E-22 1.6E-26 215.5 14.5 311 28-401 44-368 (529)
89 COG1200 RecG RecG-like helicas 99.9 1.6E-20 3.4E-25 219.4 25.5 302 25-401 260-591 (677)
90 PRK09694 helicase Cas3; Provis 99.9 3.4E-20 7.3E-25 229.8 29.7 321 25-390 284-663 (878)
91 TIGR00595 priA primosomal prot 99.9 6.7E-21 1.4E-25 226.4 19.3 296 46-396 1-376 (505)
92 PRK11448 hsdR type I restricti 99.8 1.6E-19 3.5E-24 229.7 30.0 346 26-406 412-821 (1123)
93 COG1197 Mfd Transcription-repa 99.8 7.3E-20 1.6E-24 224.4 24.4 299 28-401 595-913 (1139)
94 PRK09200 preprotein translocas 99.8 3.9E-20 8.4E-25 225.4 21.2 106 276-402 428-542 (790)
95 PRK12898 secA preprotein trans 99.8 9.1E-20 2E-24 217.9 23.2 105 276-402 473-587 (656)
96 TIGR01054 rgy reverse gyrase. 99.8 2.8E-19 6.1E-24 229.0 27.7 275 25-358 76-411 (1171)
97 TIGR00963 secA preprotein tran 99.8 5.9E-20 1.3E-24 220.4 20.1 118 259-402 392-518 (745)
98 KOG0921 Dosage compensation co 99.8 8.9E-21 1.9E-25 221.3 1.3 543 20-626 399-964 (1282)
99 KOG0950 DNA polymerase theta/e 99.8 1.8E-18 3.8E-23 206.1 19.8 329 26-403 222-613 (1008)
100 PRK04914 ATP-dependent helicas 99.8 4.7E-17 1E-21 203.2 26.8 107 276-401 493-605 (956)
101 COG1203 CRISPR-associated heli 99.8 3.3E-17 7.1E-22 203.5 22.7 316 24-400 192-549 (733)
102 KOG0353 ATP-dependent DNA heli 99.7 8.4E-17 1.8E-21 173.1 17.7 278 28-351 95-391 (695)
103 PRK13104 secA preprotein trans 99.7 7.7E-16 1.7E-20 187.6 21.3 126 22-148 75-213 (896)
104 COG4096 HsdR Type I site-speci 99.7 1.2E-15 2.5E-20 180.8 21.1 364 24-425 162-572 (875)
105 KOG0329 ATP-dependent RNA heli 99.7 9.6E-17 2.1E-21 165.3 10.3 277 28-401 65-355 (387)
106 PF00270 DEAD: DEAD/DEAH box h 99.7 6.9E-16 1.5E-20 157.4 15.3 154 29-186 1-168 (169)
107 PRK12906 secA preprotein trans 99.7 1.1E-15 2.4E-20 185.5 16.7 105 276-401 440-553 (796)
108 PRK12904 preprotein translocas 99.6 4E-15 8.7E-20 181.3 20.5 79 258-344 416-495 (830)
109 KOG0949 Predicted helicase, DE 99.6 3.4E-14 7.3E-19 168.6 24.2 165 25-192 509-685 (1330)
110 TIGR00348 hsdR type I site-spe 99.6 3.2E-14 7E-19 175.2 24.6 335 29-393 240-639 (667)
111 KOG0349 Putative DEAD-box RNA 99.6 6.7E-15 1.5E-19 161.1 15.7 298 71-399 289-613 (725)
112 cd00268 DEADc DEAD-box helicas 99.6 5.3E-14 1.1E-18 148.5 15.3 151 28-180 22-185 (203)
113 PRK13107 preprotein translocas 99.6 8.5E-14 1.8E-18 169.4 18.8 80 258-344 435-514 (908)
114 COG1198 PriA Primosomal protei 99.5 8.3E-14 1.8E-18 168.6 17.6 318 25-396 196-598 (730)
115 PRK12899 secA preprotein trans 99.5 5.5E-13 1.2E-17 162.6 23.2 123 25-148 88-226 (970)
116 PLN03142 Probable chromatin-re 99.5 1.2E-12 2.7E-17 164.5 25.1 109 276-404 487-602 (1033)
117 KOG0953 Mitochondrial RNA heli 99.5 1.8E-13 3.9E-18 155.0 14.7 279 42-401 191-477 (700)
118 COG1110 Reverse gyrase [DNA re 99.4 7.8E-12 1.7E-16 150.7 24.1 273 26-358 81-419 (1187)
119 cd00046 DEXDc DEAD-like helica 99.4 2.3E-12 5E-17 125.5 14.6 134 43-179 1-144 (144)
120 KOG1123 RNA polymerase II tran 99.4 1.1E-12 2.5E-17 146.3 13.1 307 25-390 300-635 (776)
121 TIGR01407 dinG_rel DnaQ family 99.4 1.9E-11 4.1E-16 155.3 25.6 130 258-397 659-811 (850)
122 PF04408 HA2: Helicase associa 99.4 2.9E-13 6.4E-18 126.9 6.9 72 455-532 1-72 (102)
123 smart00487 DEXDc DEAD-like hel 99.4 3.3E-12 7.1E-17 132.2 15.4 155 25-180 6-171 (201)
124 TIGR02562 cas3_yersinia CRISPR 99.3 3.8E-10 8.1E-15 139.1 27.8 251 114-392 563-882 (1110)
125 PF04851 ResIII: Type III rest 99.3 1E-11 2.2E-16 128.1 11.3 148 26-180 2-183 (184)
126 smart00847 HA2 Helicase associ 99.3 4E-12 8.7E-17 116.9 6.2 85 455-546 1-87 (92)
127 cd00079 HELICc Helicase superf 99.3 2.2E-11 4.8E-16 118.4 11.2 101 276-396 28-130 (131)
128 KOG4150 Predicted ATP-dependen 99.3 7.8E-11 1.7E-15 133.2 16.2 315 27-394 286-633 (1034)
129 TIGR00631 uvrb excinuclease AB 99.2 3E-11 6.6E-16 147.7 12.2 111 276-401 442-553 (655)
130 PRK12900 secA preprotein trans 99.2 1.3E-10 2.7E-15 142.6 15.1 120 258-403 584-713 (1025)
131 PF00271 Helicase_C: Helicase 99.2 2E-11 4.3E-16 108.4 5.4 72 301-390 6-78 (78)
132 PRK12326 preprotein translocas 99.2 1E-09 2.2E-14 131.4 21.1 117 258-400 413-546 (764)
133 PRK05298 excinuclease ABC subu 99.2 1.2E-10 2.5E-15 143.5 12.5 110 276-400 446-556 (652)
134 PF07652 Flavi_DEAD: Flaviviru 99.2 1.8E-10 4E-15 112.3 10.7 132 41-181 3-138 (148)
135 KOG0385 Chromatin remodeling c 99.2 2.9E-09 6.2E-14 125.2 22.5 350 26-404 166-602 (971)
136 PRK13103 secA preprotein trans 99.1 6.1E-10 1.3E-14 136.3 15.8 125 23-148 76-213 (913)
137 KOG0387 Transcription-coupled 99.1 9.2E-09 2E-13 121.7 23.4 350 28-404 206-661 (923)
138 PF02399 Herpes_ori_bp: Origin 99.1 1.8E-08 4E-13 121.7 26.4 325 40-402 47-389 (824)
139 PRK07246 bifunctional ATP-depe 99.1 4.6E-08 1E-12 123.2 30.0 128 257-397 632-780 (820)
140 PRK08074 bifunctional ATP-depe 99.0 1.4E-07 3.1E-12 120.8 30.7 132 257-397 736-890 (928)
141 smart00490 HELICc helicase sup 99.0 8.7E-10 1.9E-14 97.8 6.7 78 292-389 3-81 (82)
142 PRK12903 secA preprotein trans 99.0 2.5E-08 5.4E-13 121.3 19.9 116 258-400 412-538 (925)
143 KOG0951 RNA helicase BRR2, DEA 98.9 4.6E-08 1E-12 120.1 20.6 322 32-412 1148-1508(1674)
144 CHL00122 secA preprotein trans 98.9 1.6E-08 3.4E-13 123.7 16.3 78 259-344 411-491 (870)
145 COG0556 UvrB Helicase subunit 98.8 5.2E-08 1.1E-12 111.2 15.8 109 276-399 446-555 (663)
146 PRK12902 secA preprotein trans 98.8 1.5E-07 3.3E-12 115.0 20.1 124 23-148 79-216 (939)
147 COG4889 Predicted helicase [Ge 98.8 2.3E-07 5E-12 110.2 20.1 82 296-395 491-578 (1518)
148 KOG0384 Chromodomain-helicase 98.7 2E-07 4.4E-12 114.9 17.3 129 276-427 699-835 (1373)
149 PRK14873 primosome assembly pr 98.7 2.1E-07 4.6E-12 114.0 17.5 133 45-188 163-312 (665)
150 KOG0390 DNA repair protein, SN 98.7 4.3E-06 9.4E-11 101.9 27.4 108 280-403 598-709 (776)
151 TIGR03117 cas_csf4 CRISPR-asso 98.7 1.4E-05 3.1E-10 97.1 31.2 119 276-399 470-615 (636)
152 KOG1000 Chromatin remodeling p 98.5 1.6E-05 3.5E-10 90.3 23.0 74 276-351 492-568 (689)
153 KOG1040 Polyadenylation factor 98.3 3.1E-07 6.7E-12 102.0 3.6 71 715-785 58-129 (325)
154 KOG1677 CCCH-type Zn-finger pr 98.3 4.6E-07 9.9E-12 103.5 4.4 61 728-788 126-204 (332)
155 KOG0392 SNF2 family DNA-depend 98.3 4E-05 8.6E-10 95.0 20.4 112 276-403 1340-1456(1549)
156 COG0610 Type I site-specific r 98.2 2.1E-05 4.6E-10 100.7 17.2 132 43-179 274-413 (962)
157 KOG0389 SNF2 family DNA-depend 98.1 7.9E-05 1.7E-09 89.1 17.9 112 276-404 777-891 (941)
158 PF00176 SNF2_N: SNF2 family N 98.0 3.8E-05 8.3E-10 85.7 12.9 141 41-189 24-182 (299)
159 PF13401 AAA_22: AAA domain; P 98.0 1.1E-05 2.4E-10 78.6 6.2 116 40-178 2-125 (131)
160 TIGR00596 rad1 DNA repair prot 97.9 5.6E-05 1.2E-09 94.5 12.9 79 112-191 6-89 (814)
161 PRK12901 secA preprotein trans 97.9 0.00011 2.5E-09 91.4 13.7 116 258-399 614-739 (1112)
162 PF13604 AAA_30: AAA domain; P 97.8 4.5E-05 9.8E-10 80.4 8.6 121 28-178 2-130 (196)
163 PF00448 SRP54: SRP54-type pro 97.8 5.9E-05 1.3E-09 79.4 9.1 124 43-185 2-131 (196)
164 PRK12723 flagellar biosynthesi 97.8 0.00021 4.6E-09 82.6 14.0 126 42-191 174-309 (388)
165 COG5063 CTH1 CCCH-type Zn-fing 97.8 1.7E-05 3.6E-10 84.8 4.5 102 733-835 229-347 (351)
166 KOG1763 Uncharacterized conser 97.8 3.9E-06 8.5E-11 89.0 -0.3 57 731-787 89-192 (343)
167 PF10354 DUF2431: Domain of un 97.8 3E-05 6.4E-10 79.3 5.5 145 822-970 1-158 (166)
168 PF00642 zf-CCCH: Zinc finger 97.8 6.1E-06 1.3E-10 57.7 0.1 24 733-756 2-26 (27)
169 PF00642 zf-CCCH: Zinc finger 97.7 8.4E-06 1.8E-10 57.0 0.3 26 760-785 2-27 (27)
170 COG5084 YTH1 Cleavage and poly 97.7 0.00012 2.5E-09 79.9 8.6 55 731-785 101-158 (285)
171 COG1419 FlhF Flagellar GTP-bin 97.7 0.00044 9.5E-09 78.9 13.5 126 42-191 203-335 (407)
172 smart00488 DEXDc2 DEAD-like he 97.6 0.00037 8E-09 78.0 10.7 35 28-62 9-47 (289)
173 smart00489 DEXDc3 DEAD-like he 97.6 0.00037 8E-09 78.0 10.7 35 28-62 9-47 (289)
174 KOG1492 C3H1-type Zn-finger pr 97.6 3.4E-05 7.3E-10 78.6 2.1 60 724-785 223-283 (377)
175 smart00356 ZnF_C3H1 zinc finge 97.6 4.5E-05 9.7E-10 53.2 2.1 24 733-756 3-26 (27)
176 PRK10875 recD exonuclease V su 97.5 0.00036 7.9E-09 85.3 11.0 136 29-178 154-301 (615)
177 PF02562 PhoH: PhoH-like prote 97.5 0.00018 3.9E-09 75.8 7.0 51 27-77 4-58 (205)
178 PRK10536 hypothetical protein; 97.5 0.00035 7.5E-09 75.7 9.3 52 26-77 58-113 (262)
179 TIGR01447 recD exodeoxyribonuc 97.5 0.00048 1E-08 84.0 11.6 135 30-178 148-295 (586)
180 PRK14722 flhF flagellar biosyn 97.5 0.00048 1E-08 79.1 10.5 122 41-186 136-264 (374)
181 PF13245 AAA_19: Part of AAA d 97.5 0.00024 5.2E-09 62.9 6.1 51 38-88 6-62 (76)
182 TIGR01448 recD_rel helicase, p 97.4 0.0007 1.5E-08 84.9 12.1 123 25-178 321-452 (720)
183 KOG2494 C3H1-type Zn-finger pr 97.4 5.5E-05 1.2E-09 82.4 1.5 55 731-787 34-95 (331)
184 KOG1002 Nucleotide excision re 97.4 0.036 7.9E-07 63.7 23.2 109 278-403 640-751 (791)
185 PRK11889 flhF flagellar biosyn 97.4 0.0015 3.2E-08 74.8 12.5 125 43-188 242-371 (436)
186 KOG1492 C3H1-type Zn-finger pr 97.4 9.7E-05 2.1E-09 75.3 2.4 56 734-791 206-262 (377)
187 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0017 3.7E-08 81.7 13.9 122 25-176 350-474 (744)
188 cd00009 AAA The AAA+ (ATPases 97.3 0.0026 5.7E-08 61.9 12.3 45 32-76 7-55 (151)
189 PF09848 DUF2075: Uncharacteri 97.3 0.00078 1.7E-08 77.7 9.5 92 43-152 2-97 (352)
190 COG5252 Uncharacterized conser 97.3 7.4E-05 1.6E-09 77.0 0.7 55 731-785 82-175 (299)
191 PRK05703 flhF flagellar biosyn 97.3 0.0034 7.4E-08 73.9 14.5 125 42-190 221-353 (424)
192 COG0653 SecA Preprotein transl 97.2 0.0038 8.2E-08 77.1 14.4 111 258-394 415-538 (822)
193 KOG0386 Chromatin remodeling c 97.2 0.0019 4E-08 79.6 11.4 108 276-403 726-840 (1157)
194 PRK06526 transposase; Provisio 97.2 0.00094 2E-08 73.2 8.1 27 37-63 93-119 (254)
195 PRK04296 thymidine kinase; Pro 97.2 0.0024 5.1E-08 67.0 10.5 35 42-76 2-38 (190)
196 smart00382 AAA ATPases associa 97.1 0.0014 3E-08 63.2 8.0 37 42-78 2-40 (148)
197 smart00356 ZnF_C3H1 zinc finge 97.1 0.0003 6.5E-09 49.0 2.3 25 760-785 3-27 (27)
198 PRK13889 conjugal transfer rel 97.1 0.0036 7.8E-08 80.1 13.3 124 25-178 344-470 (988)
199 PRK11747 dinG ATP-dependent DN 97.1 0.007 1.5E-07 75.9 15.5 128 257-397 519-671 (697)
200 PF13872 AAA_34: P-loop contai 97.1 0.0084 1.8E-07 66.3 14.1 149 28-179 38-220 (303)
201 PRK14974 cell division protein 97.0 0.0056 1.2E-07 69.7 12.8 128 43-189 141-276 (336)
202 PRK15483 type III restriction- 97.0 0.0035 7.6E-08 79.1 11.8 134 43-181 60-240 (986)
203 COG1199 DinG Rad3-related DNA 97.0 0.0089 1.9E-07 74.8 15.4 135 256-397 462-614 (654)
204 PRK12724 flagellar biosynthesi 97.0 0.0056 1.2E-07 71.0 12.4 122 42-188 223-353 (432)
205 PRK12727 flagellar biosynthesi 97.0 0.0051 1.1E-07 73.1 12.1 126 40-189 348-479 (559)
206 KOG1595 CCCH-type Zn-finger pr 96.9 0.0015 3.3E-08 75.8 6.7 55 731-789 233-295 (528)
207 PF13086 AAA_11: AAA domain; P 96.9 0.0023 5E-08 68.3 7.6 63 28-90 2-75 (236)
208 PRK14723 flhF flagellar biosyn 96.9 0.0092 2E-07 74.1 13.5 123 42-188 185-314 (767)
209 PRK12726 flagellar biosynthesi 96.9 0.0051 1.1E-07 70.3 10.4 129 41-190 205-338 (407)
210 PF13173 AAA_14: AAA domain 96.8 0.0066 1.4E-07 59.3 9.8 97 41-178 1-98 (128)
211 PRK08181 transposase; Validate 96.8 0.01 2.2E-07 65.6 12.2 34 29-62 89-126 (269)
212 PRK14721 flhF flagellar biosyn 96.8 0.0097 2.1E-07 69.6 12.3 126 41-190 190-322 (420)
213 PF06862 DUF1253: Protein of u 96.8 0.083 1.8E-06 61.9 19.7 113 276-405 300-419 (442)
214 PF05970 PIF1: PIF1-like helic 96.8 0.0053 1.1E-07 71.1 10.0 57 28-84 2-66 (364)
215 PRK13826 Dtr system oriT relax 96.7 0.012 2.6E-07 75.9 13.2 124 25-178 379-505 (1102)
216 KOG0391 SNF2 family DNA-depend 96.6 0.012 2.6E-07 73.3 11.8 112 276-404 1276-1390(1958)
217 PRK06835 DNA replication prote 96.6 0.017 3.6E-07 65.8 12.4 52 137-189 246-298 (329)
218 COG5063 CTH1 CCCH-type Zn-fing 96.6 0.0021 4.5E-08 69.2 4.1 57 729-785 269-338 (351)
219 KOG2333 Uncharacterized conser 96.5 0.0017 3.6E-08 74.1 3.4 51 733-783 75-136 (614)
220 PF13307 Helicase_C_2: Helicas 96.5 0.0028 6.1E-08 65.0 4.8 116 276-395 9-143 (167)
221 PRK08727 hypothetical protein; 96.4 0.012 2.6E-07 63.8 9.4 20 43-62 42-61 (233)
222 KOG0952 DNA/RNA helicase MER3/ 96.4 0.0008 1.7E-08 83.1 0.1 165 25-190 910-1105(1230)
223 PF07517 SecA_DEAD: SecA DEAD- 96.4 0.011 2.3E-07 65.1 8.7 120 27-148 75-208 (266)
224 COG5084 YTH1 Cleavage and poly 96.4 0.0075 1.6E-07 66.0 7.2 59 733-791 133-195 (285)
225 PF05127 Helicase_RecD: Helica 96.4 0.0023 4.9E-08 65.9 3.1 113 46-179 1-123 (177)
226 PRK06731 flhF flagellar biosyn 96.3 0.039 8.5E-07 61.0 12.3 127 42-189 75-206 (270)
227 KOG1040 Polyadenylation factor 96.3 0.0023 4.9E-08 71.6 2.6 69 719-790 92-162 (325)
228 PF05729 NACHT: NACHT domain 96.2 0.019 4.2E-07 57.7 9.0 51 139-189 83-140 (166)
229 PRK08116 hypothetical protein; 96.2 0.054 1.2E-06 60.0 13.1 20 43-62 115-134 (268)
230 PRK06995 flhF flagellar biosyn 96.2 0.039 8.4E-07 65.7 12.3 125 41-189 255-386 (484)
231 PRK05642 DNA replication initi 96.1 0.023 4.9E-07 61.7 9.4 20 43-62 46-65 (234)
232 PRK10416 signal recognition pa 96.1 0.057 1.2E-06 61.3 12.9 125 42-185 114-250 (318)
233 PRK06893 DNA replication initi 96.1 0.023 4.9E-07 61.5 9.2 47 137-185 91-140 (229)
234 PF14608 zf-CCCH_2: Zinc finge 96.1 0.0033 7.2E-08 40.1 1.5 11 773-783 8-18 (19)
235 TIGR00604 rad3 DNA repair heli 96.1 0.084 1.8E-06 66.6 15.4 95 257-356 506-615 (705)
236 PF01695 IstB_IS21: IstB-like 96.1 0.02 4.2E-07 59.5 8.0 24 39-62 44-67 (178)
237 PRK00771 signal recognition pa 96.0 0.035 7.6E-07 65.5 11.0 118 43-180 96-218 (437)
238 TIGR02640 gas_vesic_GvpN gas v 96.0 0.02 4.3E-07 63.3 8.5 42 28-69 7-48 (262)
239 PRK08084 DNA replication initi 96.0 0.034 7.4E-07 60.4 10.1 22 42-63 45-66 (235)
240 KOG2340 Uncharacterized conser 96.0 0.064 1.4E-06 62.5 12.1 111 276-403 552-670 (698)
241 PRK07952 DNA replication prote 95.9 0.085 1.9E-06 57.5 12.6 52 137-189 162-214 (244)
242 KOG1802 RNA helicase nonsense 95.9 0.015 3.3E-07 68.9 7.0 66 25-90 407-476 (935)
243 TIGR02782 TrbB_P P-type conjug 95.9 0.058 1.3E-06 60.7 11.5 86 35-147 125-214 (299)
244 TIGR03015 pepcterm_ATPase puta 95.9 0.025 5.5E-07 62.3 8.5 25 43-67 44-68 (269)
245 TIGR03499 FlhF flagellar biosy 95.9 0.027 5.8E-07 62.9 8.6 82 42-146 194-281 (282)
246 TIGR00376 DNA helicase, putati 95.9 0.026 5.7E-07 69.9 9.4 65 26-90 156-223 (637)
247 PHA03333 putative ATPase subun 95.8 0.2 4.3E-06 61.2 16.1 141 40-191 185-344 (752)
248 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.041 8.8E-07 59.0 9.5 23 41-63 37-59 (226)
249 PF14608 zf-CCCH_2: Zinc finge 95.8 0.0056 1.2E-07 39.1 1.6 19 736-756 1-19 (19)
250 TIGR00064 ftsY signal recognit 95.8 0.065 1.4E-06 59.5 11.1 124 43-185 73-208 (272)
251 COG1444 Predicted P-loop ATPas 95.8 0.1 2.3E-06 64.5 13.6 145 25-189 209-371 (758)
252 PRK00411 cdc6 cell division co 95.7 0.084 1.8E-06 61.7 12.4 23 43-65 56-78 (394)
253 PRK14956 DNA polymerase III su 95.7 0.061 1.3E-06 63.7 11.1 40 137-180 121-160 (484)
254 KOG1595 CCCH-type Zn-finger pr 95.7 0.0075 1.6E-07 70.2 3.4 50 732-785 199-259 (528)
255 PRK13894 conjugal transfer ATP 95.7 0.057 1.2E-06 61.3 10.4 35 30-64 135-170 (319)
256 PF00580 UvrD-helicase: UvrD/R 95.6 0.022 4.8E-07 63.8 7.0 117 28-147 1-125 (315)
257 COG2804 PulE Type II secretory 95.6 0.031 6.7E-07 65.7 7.9 96 23-147 237-337 (500)
258 KOG2185 Predicted RNA-processi 95.6 0.0047 1E-07 68.9 1.1 25 733-757 139-163 (486)
259 COG1875 NYN ribonuclease and A 95.5 0.066 1.4E-06 60.2 9.9 130 26-177 227-386 (436)
260 PRK07003 DNA polymerase III su 95.5 0.057 1.2E-06 66.7 10.2 38 137-176 119-156 (830)
261 TIGR02881 spore_V_K stage V sp 95.5 0.044 9.5E-07 60.5 8.7 20 43-62 43-62 (261)
262 PRK06921 hypothetical protein; 95.5 0.082 1.8E-06 58.5 10.7 23 41-63 116-138 (266)
263 PF05621 TniB: Bacterial TniB 95.5 0.081 1.8E-06 58.8 10.4 54 43-96 62-124 (302)
264 TIGR01425 SRP54_euk signal rec 95.5 0.12 2.7E-06 60.5 12.5 128 43-189 101-236 (429)
265 PF00004 AAA: ATPase family as 95.5 0.083 1.8E-06 51.0 9.5 22 45-66 1-22 (132)
266 PTZ00112 origin recognition co 95.4 0.13 2.8E-06 64.2 12.7 40 24-63 755-802 (1164)
267 PRK09183 transposase/IS protei 95.4 0.083 1.8E-06 58.3 10.2 25 39-63 99-123 (259)
268 COG1219 ClpX ATP-dependent pro 95.4 0.026 5.7E-07 62.1 5.9 27 122-148 145-173 (408)
269 PF12340 DUF3638: Protein of u 95.3 0.098 2.1E-06 56.0 9.9 102 24-127 20-144 (229)
270 PRK04841 transcriptional regul 95.3 0.1 2.2E-06 67.8 12.2 131 35-179 25-162 (903)
271 PF00308 Bac_DnaA: Bacterial d 95.3 0.07 1.5E-06 57.3 8.8 40 137-178 97-139 (219)
272 PRK12402 replication factor C 95.2 0.13 2.9E-06 58.5 11.8 34 32-65 24-59 (337)
273 TIGR02760 TraI_TIGR conjugativ 95.2 0.14 3E-06 71.1 13.6 136 25-178 427-566 (1960)
274 cd01130 VirB11-like_ATPase Typ 95.2 0.14 3E-06 53.5 10.8 34 30-63 12-46 (186)
275 PRK12323 DNA polymerase III su 95.2 0.095 2.1E-06 63.9 10.6 39 136-176 123-161 (700)
276 PRK07994 DNA polymerase III su 95.2 0.071 1.5E-06 65.6 9.8 38 136-175 118-155 (647)
277 PHA00729 NTP-binding motif con 95.2 0.062 1.3E-06 57.6 8.1 28 35-62 8-37 (226)
278 PRK13851 type IV secretion sys 95.2 0.13 2.7E-06 59.0 11.0 39 38-76 158-197 (344)
279 KOG4791 Uncharacterized conser 95.1 0.0058 1.3E-07 69.2 0.2 49 734-785 32-84 (667)
280 PRK14961 DNA polymerase III su 95.1 0.082 1.8E-06 61.3 9.5 22 44-65 40-61 (363)
281 PRK08903 DnaA regulatory inact 95.1 0.097 2.1E-06 56.3 9.5 23 41-63 41-63 (227)
282 PRK14949 DNA polymerase III su 95.1 0.098 2.1E-06 65.9 10.5 45 136-184 118-162 (944)
283 cd01120 RecA-like_NTPases RecA 95.0 0.14 2.9E-06 51.1 9.8 23 44-66 1-23 (165)
284 KOG2185 Predicted RNA-processi 95.0 0.0085 1.8E-07 66.9 1.0 28 761-789 140-167 (486)
285 KOG0388 SNF2 family DNA-depend 95.0 0.1 2.2E-06 62.5 9.7 112 276-404 1044-1157(1185)
286 PRK14964 DNA polymerase III su 95.0 0.13 2.8E-06 61.6 10.9 38 136-175 115-152 (491)
287 PHA02244 ATPase-like protein 95.0 0.26 5.6E-06 56.6 12.8 44 25-68 101-145 (383)
288 KOG0989 Replication factor C, 95.0 0.041 9E-07 60.5 6.2 123 30-178 39-168 (346)
289 PRK14088 dnaA chromosomal repl 95.0 0.14 3E-06 61.0 11.1 18 43-60 131-148 (440)
290 KOG1677 CCCH-type Zn-finger pr 95.0 0.022 4.7E-07 65.2 4.3 55 735-789 87-161 (332)
291 PRK09087 hypothetical protein; 95.0 0.2 4.4E-06 54.1 11.4 21 42-62 44-64 (226)
292 PRK14957 DNA polymerase III su 95.0 0.14 3.1E-06 62.0 11.2 30 35-64 28-60 (546)
293 PRK12422 chromosomal replicati 95.0 0.12 2.6E-06 61.4 10.4 21 43-63 142-162 (445)
294 PRK12377 putative replication 95.0 0.35 7.7E-06 52.9 13.3 33 42-74 101-136 (248)
295 PRK14960 DNA polymerase III su 94.9 0.11 2.4E-06 63.6 10.0 30 35-64 27-59 (702)
296 PRK14958 DNA polymerase III su 94.9 0.15 3.2E-06 61.7 11.1 38 136-175 118-155 (509)
297 PRK09112 DNA polymerase III su 94.8 0.096 2.1E-06 60.3 9.0 39 136-176 140-178 (351)
298 COG1484 DnaC DNA replication p 94.8 0.24 5.1E-06 54.5 11.6 114 36-189 99-218 (254)
299 PRK06645 DNA polymerase III su 94.8 0.27 5.9E-06 59.2 13.0 26 39-64 37-65 (507)
300 PRK14087 dnaA chromosomal repl 94.8 0.11 2.5E-06 61.8 9.7 20 43-62 142-161 (450)
301 PRK08691 DNA polymerase III su 94.8 0.088 1.9E-06 64.8 8.8 39 136-176 118-156 (709)
302 PRK08939 primosomal protein Dn 94.7 0.42 9.2E-06 54.0 13.6 110 42-189 156-270 (306)
303 TIGR02788 VirB11 P-type DNA tr 94.7 0.17 3.6E-06 57.4 10.4 36 39-74 141-177 (308)
304 PRK00149 dnaA chromosomal repl 94.7 0.25 5.3E-06 59.1 12.4 20 43-62 149-168 (450)
305 KOG1803 DNA helicase [Replicat 94.7 0.04 8.6E-07 65.4 5.3 63 27-89 185-250 (649)
306 PF01637 Arch_ATPase: Archaeal 94.6 0.082 1.8E-06 56.3 7.3 34 33-66 9-44 (234)
307 PRK09111 DNA polymerase III su 94.6 0.25 5.5E-06 60.7 12.3 39 136-176 131-169 (598)
308 TIGR02928 orc1/cdc6 family rep 94.6 0.26 5.6E-06 57.0 11.9 39 25-63 16-61 (365)
309 cd01129 PulE-GspE PulE/GspE Th 94.5 0.24 5.1E-06 54.9 10.8 41 25-65 61-103 (264)
310 PRK10867 signal recognition pa 94.4 0.19 4.1E-06 59.3 10.2 118 43-179 101-225 (433)
311 cd03115 SRP The signal recogni 94.4 0.21 4.5E-06 51.3 9.4 120 44-182 2-127 (173)
312 PF05496 RuvB_N: Holliday junc 94.4 0.068 1.5E-06 57.0 5.8 17 43-59 51-67 (233)
313 TIGR02760 TraI_TIGR conjugativ 94.4 0.18 3.8E-06 70.0 11.2 122 26-178 1018-1149(1960)
314 PHA02533 17 large terminase pr 94.4 0.75 1.6E-05 55.9 15.4 157 24-189 56-220 (534)
315 PRK14712 conjugal transfer nic 94.3 0.27 5.8E-06 65.9 12.3 122 26-178 834-967 (1623)
316 TIGR00362 DnaA chromosomal rep 94.3 0.31 6.8E-06 57.3 11.9 20 43-62 137-156 (405)
317 PRK14086 dnaA chromosomal repl 94.3 0.38 8.3E-06 58.7 12.6 21 43-63 315-335 (617)
318 PRK07764 DNA polymerase III su 94.3 0.14 3.1E-06 65.0 9.3 39 136-176 119-157 (824)
319 PRK14969 DNA polymerase III su 94.2 0.28 6.1E-06 59.6 11.4 39 136-176 118-156 (527)
320 CHL00181 cbbX CbbX; Provisiona 94.2 0.2 4.3E-06 56.1 9.4 20 43-62 60-79 (287)
321 PRK10436 hypothetical protein; 94.2 0.15 3.3E-06 60.7 8.8 42 24-65 198-241 (462)
322 KOG2373 Predicted mitochondria 94.2 0.018 3.8E-07 63.8 0.9 101 41-147 272-384 (514)
323 TIGR01650 PD_CobS cobaltochela 94.1 0.26 5.6E-06 55.8 10.1 40 30-69 52-91 (327)
324 PRK11331 5-methylcytosine-spec 94.1 0.16 3.5E-06 59.7 8.6 34 30-63 182-215 (459)
325 COG2909 MalT ATP-dependent tra 94.1 0.45 9.7E-06 59.1 12.7 33 32-64 24-59 (894)
326 PHA02544 44 clamp loader, smal 94.1 0.35 7.6E-06 54.8 11.4 33 33-65 31-66 (316)
327 PRK06620 hypothetical protein; 94.1 0.17 3.6E-06 54.2 8.1 19 43-61 45-63 (214)
328 KOG0741 AAA+-type ATPase [Post 94.0 0.18 4E-06 59.0 8.7 103 44-182 540-652 (744)
329 PRK14952 DNA polymerase III su 94.0 0.23 5E-06 60.8 10.0 39 136-176 117-155 (584)
330 TIGR00959 ffh signal recogniti 93.9 0.4 8.7E-06 56.6 11.6 118 43-179 100-224 (428)
331 PTZ00293 thymidine kinase; Pro 93.8 0.12 2.7E-06 54.7 6.4 36 41-76 3-40 (211)
332 PF01443 Viral_helicase1: Vira 93.8 0.051 1.1E-06 58.4 3.7 22 45-66 1-22 (234)
333 PRK14951 DNA polymerase III su 93.8 0.21 4.5E-06 61.5 9.2 39 136-176 123-161 (618)
334 PRK14962 DNA polymerase III su 93.8 0.34 7.3E-06 58.1 10.8 28 37-64 28-58 (472)
335 TIGR02880 cbbX_cfxQ probable R 93.8 0.2 4.4E-06 56.0 8.5 17 43-59 59-75 (284)
336 PRK13709 conjugal transfer nic 93.8 0.43 9.3E-06 64.9 12.7 122 26-178 966-1099(1747)
337 PF00437 T2SE: Type II/IV secr 93.8 0.075 1.6E-06 58.8 5.0 37 39-75 124-162 (270)
338 KOG2228 Origin recognition com 93.8 0.95 2.1E-05 50.8 13.2 126 41-181 48-183 (408)
339 TIGR00678 holB DNA polymerase 93.7 0.43 9.4E-06 49.7 10.4 30 34-63 3-35 (188)
340 KOG1805 DNA replication helica 93.7 0.12 2.6E-06 64.3 6.9 119 25-147 667-806 (1100)
341 PF03266 NTPase_1: NTPase; In 93.7 0.25 5.5E-06 50.8 8.3 22 44-65 1-22 (168)
342 TIGR03345 VI_ClpV1 type VI sec 93.7 0.37 7.9E-06 61.9 11.5 117 44-188 598-727 (852)
343 TIGR02533 type_II_gspE general 93.6 0.19 4E-06 60.5 8.3 43 23-65 221-265 (486)
344 COG2256 MGS1 ATPase related to 93.5 0.35 7.7E-06 55.3 9.6 35 137-179 104-140 (436)
345 PRK13833 conjugal transfer pro 93.5 0.14 3E-06 58.1 6.5 47 29-75 130-181 (323)
346 PLN03025 replication factor C 93.5 0.43 9.2E-06 54.3 10.5 23 43-65 35-57 (319)
347 PRK14955 DNA polymerase III su 93.4 0.31 6.8E-06 57.2 9.5 27 37-63 30-59 (397)
348 PRK14959 DNA polymerase III su 93.4 0.48 1E-05 58.1 11.3 28 36-63 29-59 (624)
349 KOG4791 Uncharacterized conser 93.4 0.037 8.1E-07 62.9 1.7 63 721-785 48-141 (667)
350 TIGR02538 type_IV_pilB type IV 93.3 0.19 4.1E-06 61.6 7.9 42 24-65 296-339 (564)
351 COG1702 PhoH Phosphate starvat 93.3 0.064 1.4E-06 60.1 3.4 51 26-76 127-181 (348)
352 COG0553 HepA Superfamily II DN 93.2 0.24 5.1E-06 64.0 9.0 110 278-404 713-825 (866)
353 PRK13900 type IV secretion sys 93.2 0.16 3.5E-06 58.0 6.5 37 38-74 156-193 (332)
354 COG5152 Uncharacterized conser 93.1 0.033 7.2E-07 56.5 0.8 28 730-757 137-165 (259)
355 PRK04195 replication factor C 93.1 0.64 1.4E-05 56.0 11.8 27 42-68 39-65 (482)
356 PRK00440 rfc replication facto 93.1 0.75 1.6E-05 51.9 11.8 21 43-63 39-59 (319)
357 PF13177 DNA_pol3_delta2: DNA 93.0 0.31 6.7E-06 49.8 7.7 41 136-178 101-141 (162)
358 PRK14950 DNA polymerase III su 93.0 0.28 6.1E-06 60.5 8.7 28 36-63 29-59 (585)
359 TIGR03819 heli_sec_ATPase heli 93.0 0.69 1.5E-05 53.1 11.3 46 30-75 165-212 (340)
360 KOG0391 SNF2 family DNA-depend 92.9 0.41 8.8E-06 60.5 9.6 116 28-147 616-747 (1958)
361 cd01124 KaiC KaiC is a circadi 92.9 0.24 5.2E-06 51.2 6.8 23 44-66 1-23 (187)
362 PF00931 NB-ARC: NB-ARC domain 92.8 0.19 4.2E-06 55.7 6.5 61 33-93 6-75 (287)
363 PHA03368 DNA packaging termina 92.8 1.2 2.7E-05 54.4 13.2 138 42-191 254-402 (738)
364 PRK07133 DNA polymerase III su 92.8 0.62 1.3E-05 58.1 11.1 29 35-63 30-61 (725)
365 COG4962 CpaF Flp pilus assembl 92.7 0.21 4.5E-06 56.2 6.3 50 29-78 159-210 (355)
366 PRK13342 recombination factor 92.7 0.49 1.1E-05 55.9 9.8 22 43-64 37-58 (413)
367 PRK08451 DNA polymerase III su 92.6 0.69 1.5E-05 56.0 11.0 39 136-176 116-154 (535)
368 KOG1132 Helicase of the DEAD s 92.6 0.2 4.4E-06 61.9 6.5 38 111-148 220-258 (945)
369 COG2805 PilT Tfp pilus assembl 92.6 0.13 2.8E-06 56.7 4.3 42 22-65 107-148 (353)
370 PRK14953 DNA polymerase III su 92.6 0.72 1.5E-05 55.5 11.1 29 35-63 28-59 (486)
371 PRK14965 DNA polymerase III su 92.5 0.57 1.2E-05 57.7 10.4 31 34-64 27-60 (576)
372 TIGR00635 ruvB Holliday juncti 92.5 0.71 1.5E-05 52.0 10.4 31 451-483 270-301 (305)
373 TIGR02858 spore_III_AA stage I 92.5 0.99 2.1E-05 50.1 11.2 33 32-64 98-133 (270)
374 COG0552 FtsY Signal recognitio 92.3 2.8 6E-05 47.3 14.3 130 44-191 141-283 (340)
375 CHL00176 ftsH cell division pr 92.3 1.5 3.2E-05 54.6 13.5 24 43-66 217-240 (638)
376 PRK11747 dinG ATP-dependent DN 92.2 0.32 7E-06 61.2 7.8 60 25-84 23-94 (697)
377 TIGR00604 rad3 DNA repair heli 92.2 0.3 6.5E-06 61.7 7.6 53 27-79 10-71 (705)
378 COG0541 Ffh Signal recognition 92.1 2.4 5.3E-05 49.3 14.0 131 43-190 101-237 (451)
379 PRK14948 DNA polymerase III su 92.1 0.4 8.6E-06 59.4 8.4 30 35-64 28-60 (620)
380 cd03247 ABCC_cytochrome_bd The 92.0 1.1 2.4E-05 46.3 10.4 124 39-176 25-154 (178)
381 cd00267 ABC_ATPase ABC (ATP-bi 92.0 0.45 9.8E-06 47.9 7.4 25 39-63 22-46 (157)
382 TIGR02785 addA_Gpos recombinat 91.9 0.24 5.2E-06 66.3 6.6 132 28-162 2-140 (1232)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.9 0.71 1.5E-05 46.0 8.5 89 39-163 23-113 (144)
384 KOG1039 Predicted E3 ubiquitin 91.8 0.11 2.5E-06 58.7 3.0 23 762-785 9-31 (344)
385 PRK14963 DNA polymerase III su 91.8 0.29 6.2E-06 59.1 6.5 37 136-174 115-151 (504)
386 PRK14954 DNA polymerase III su 91.7 0.6 1.3E-05 57.7 9.2 31 605-635 548-578 (620)
387 PRK10865 protein disaggregatio 91.7 1.1 2.5E-05 57.6 12.1 17 44-60 600-616 (857)
388 COG3587 Restriction endonuclea 91.7 0.28 6.1E-06 60.5 6.2 55 324-396 480-537 (985)
389 PRK14970 DNA polymerase III su 91.7 0.78 1.7E-05 53.2 9.8 28 35-62 29-59 (367)
390 TIGR02524 dot_icm_DotB Dot/Icm 91.6 0.19 4E-06 58.1 4.4 29 35-63 126-155 (358)
391 TIGR02688 conserved hypothetic 91.5 0.39 8.3E-06 56.0 6.8 24 37-60 204-227 (449)
392 PRK05896 DNA polymerase III su 91.5 0.6 1.3E-05 57.0 8.8 29 35-63 28-59 (605)
393 PRK05342 clpX ATP-dependent pr 91.5 0.45 9.8E-06 55.9 7.6 20 43-62 109-128 (412)
394 cd03228 ABCC_MRP_Like The MRP 91.5 0.94 2E-05 46.4 9.1 122 39-176 25-151 (171)
395 TIGR02397 dnaX_nterm DNA polym 91.4 1.3 2.7E-05 51.0 11.1 28 35-62 26-56 (355)
396 PRK05563 DNA polymerase III su 91.4 0.6 1.3E-05 57.2 8.8 21 43-63 39-59 (559)
397 cd03239 ABC_SMC_head The struc 91.3 1.4 3.1E-05 45.6 10.3 41 136-177 115-156 (178)
398 PF13555 AAA_29: P-loop contai 91.2 0.22 4.8E-06 42.2 3.3 21 42-62 23-43 (62)
399 COG5008 PilU Tfp pilus assembl 91.1 0.24 5.1E-06 53.5 4.2 28 39-66 124-151 (375)
400 COG1474 CDC6 Cdc6-related prot 91.0 2 4.4E-05 49.8 12.2 37 25-61 18-61 (366)
401 TIGR02639 ClpA ATP-dependent C 91.0 0.8 1.7E-05 58.1 9.7 19 44-62 486-504 (731)
402 PRK11823 DNA repair protein Ra 91.0 0.4 8.6E-06 57.1 6.6 46 41-87 79-126 (446)
403 PRK00080 ruvB Holliday junctio 91.0 0.38 8.3E-06 54.9 6.2 32 450-483 290-322 (328)
404 COG0470 HolB ATPase involved i 90.9 0.74 1.6E-05 52.0 8.5 39 136-176 108-146 (325)
405 COG1618 Predicted nucleotide k 90.9 0.78 1.7E-05 46.3 7.3 21 43-63 6-26 (179)
406 TIGR02639 ClpA ATP-dependent C 90.9 1.6 3.6E-05 55.4 12.3 18 42-59 203-220 (731)
407 PRK07471 DNA polymerase III su 90.8 1.9 4.1E-05 50.1 11.7 41 136-178 140-180 (365)
408 cd03238 ABC_UvrA The excision 90.8 1.4 2.9E-05 45.8 9.5 25 39-63 18-42 (176)
409 PRK13341 recombination factor 90.8 1.1 2.3E-05 56.5 10.3 21 43-63 53-73 (725)
410 TIGR01241 FtsH_fam ATP-depende 90.7 2.6 5.7E-05 51.0 13.3 24 43-66 89-112 (495)
411 cd03216 ABC_Carb_Monos_I This 90.6 0.76 1.6E-05 46.8 7.4 125 39-188 23-149 (163)
412 COG2255 RuvB Holliday junction 90.6 0.45 9.7E-06 52.2 5.8 17 43-59 53-69 (332)
413 TIGR02868 CydC thiol reductant 90.5 1.5 3.2E-05 53.6 11.1 24 40-63 359-382 (529)
414 cd00544 CobU Adenosylcobinamid 90.5 0.91 2E-05 46.7 7.9 45 45-90 2-46 (169)
415 PRK07940 DNA polymerase III su 90.5 1.6 3.4E-05 51.2 10.7 40 136-178 116-155 (394)
416 COG5152 Uncharacterized conser 90.5 0.1 2.2E-06 53.1 0.7 27 760-786 140-166 (259)
417 COG1199 DinG Rad3-related DNA 90.4 0.66 1.4E-05 58.2 8.1 58 23-80 11-75 (654)
418 PRK06067 flagellar accessory p 90.3 0.71 1.5E-05 49.9 7.3 26 41-66 24-49 (234)
419 cd01121 Sms Sms (bacterial rad 90.3 0.75 1.6E-05 53.4 7.8 35 41-75 81-117 (372)
420 COG3421 Uncharacterized protei 90.3 1.4 3E-05 52.7 9.8 140 48-188 3-176 (812)
421 COG0556 UvrB Helicase subunit 90.3 0.75 1.6E-05 54.2 7.6 74 30-107 15-93 (663)
422 PF03354 Terminase_1: Phage Te 90.2 0.52 1.1E-05 56.8 6.7 143 31-179 2-164 (477)
423 PRK11034 clpA ATP-dependent Cl 90.1 0.84 1.8E-05 57.7 8.5 20 44-63 490-509 (758)
424 KOG2543 Origin recognition com 90.0 3.2 6.9E-05 47.5 11.9 48 24-71 6-59 (438)
425 COG0593 DnaA ATPase involved i 89.9 2.2 4.7E-05 49.9 11.1 19 42-60 113-131 (408)
426 TIGR03689 pup_AAA proteasome A 89.8 1.1 2.4E-05 54.0 8.9 18 43-60 217-234 (512)
427 PRK06647 DNA polymerase III su 89.8 1.2 2.6E-05 54.7 9.3 31 34-64 27-60 (563)
428 TIGR01243 CDC48 AAA family ATP 89.8 1 2.3E-05 57.2 9.2 24 42-65 212-235 (733)
429 PRK05707 DNA polymerase III su 89.8 1.5 3.2E-05 50.1 9.6 36 27-62 3-42 (328)
430 PF00265 TK: Thymidine kinase; 89.8 0.37 7.9E-06 50.0 4.2 34 43-76 2-37 (176)
431 KOG1763 Uncharacterized conser 89.7 0.11 2.5E-06 55.9 0.5 31 756-787 87-117 (343)
432 cd01131 PilT Pilus retraction 89.7 0.26 5.6E-06 52.0 3.1 22 43-64 2-23 (198)
433 cd03281 ABC_MSH5_euk MutS5 hom 89.7 0.2 4.4E-06 53.6 2.3 21 43-63 30-50 (213)
434 cd03246 ABCC_Protease_Secretio 89.5 1.2 2.6E-05 45.8 7.8 25 39-63 25-49 (173)
435 cd03222 ABC_RNaseL_inhibitor T 89.4 1.5 3.3E-05 45.4 8.6 26 38-63 21-46 (177)
436 COG1435 Tdk Thymidine kinase [ 89.4 1.3 2.7E-05 46.3 7.7 116 42-183 4-122 (201)
437 COG1223 Predicted ATPase (AAA+ 89.4 1.2 2.6E-05 48.2 7.7 31 43-74 152-182 (368)
438 KOG4439 RNA polymerase II tran 89.4 0.35 7.7E-06 58.3 4.2 130 18-147 316-473 (901)
439 PRK11054 helD DNA helicase IV; 89.4 0.81 1.7E-05 57.4 7.6 102 25-147 194-302 (684)
440 cd03230 ABC_DR_subfamily_A Thi 89.3 0.98 2.1E-05 46.4 7.1 25 39-63 23-47 (173)
441 KOG0745 Putative ATP-dependent 89.2 0.52 1.1E-05 54.2 5.1 18 41-58 225-242 (564)
442 TIGR01243 CDC48 AAA family ATP 89.1 1.9 4.2E-05 54.8 10.8 25 43-67 488-512 (733)
443 PRK14971 DNA polymerase III su 89.0 2.6 5.6E-05 52.3 11.5 26 34-59 28-56 (614)
444 cd01123 Rad51_DMC1_radA Rad51_ 88.9 0.64 1.4E-05 50.1 5.6 26 40-65 17-42 (235)
445 TIGR00602 rad24 checkpoint pro 88.9 1.8 4E-05 53.5 10.0 23 43-65 111-133 (637)
446 PLN00020 ribulose bisphosphate 88.9 0.72 1.6E-05 52.8 6.0 31 43-73 149-179 (413)
447 cd01393 recA_like RecA is a b 88.8 0.64 1.4E-05 49.8 5.5 26 40-65 17-42 (226)
448 PRK10919 ATP-dependent DNA hel 88.8 0.97 2.1E-05 56.8 7.8 102 28-147 3-112 (672)
449 COG1126 GlnQ ABC-type polar am 88.6 0.25 5.3E-06 52.2 2.0 24 39-62 25-48 (240)
450 TIGR02525 plasmid_TraJ plasmid 88.5 0.4 8.6E-06 55.6 3.8 24 40-63 147-170 (372)
451 PLN02165 adenylate isopentenyl 88.5 0.31 6.7E-06 55.3 2.8 22 40-61 41-62 (334)
452 TIGR00763 lon ATP-dependent pr 88.4 1.2 2.6E-05 57.0 8.4 24 42-65 347-370 (775)
453 PF13207 AAA_17: AAA domain; P 88.4 0.38 8.2E-06 45.9 3.0 20 44-63 1-20 (121)
454 KOG2494 C3H1-type Zn-finger pr 88.4 1.5 3.2E-05 48.8 7.8 26 731-757 68-93 (331)
455 PF02367 UPF0079: Uncharacteri 88.3 0.56 1.2E-05 45.6 4.1 37 33-69 6-42 (123)
456 CHL00095 clpC Clp protease ATP 88.3 2.8 6E-05 54.1 11.6 36 27-62 180-220 (821)
457 TIGR03346 chaperone_ClpB ATP-d 88.3 2.1 4.6E-05 55.3 10.5 22 42-63 194-215 (852)
458 PF12775 AAA_7: P-loop contain 88.3 0.88 1.9E-05 50.6 6.2 34 35-68 25-59 (272)
459 COG3267 ExeA Type II secretory 88.3 2.8 6.1E-05 45.5 9.6 57 34-91 42-102 (269)
460 cd03229 ABC_Class3 This class 88.2 2.1 4.5E-05 44.2 8.6 115 39-164 23-144 (178)
461 KOG1015 Transcription regulato 88.2 1.3 2.9E-05 55.1 7.9 121 268-403 1134-1279(1567)
462 PRK12900 secA preprotein trans 88.0 0.38 8.2E-06 61.1 3.4 116 30-147 139-268 (1025)
463 cd03215 ABC_Carb_Monos_II This 88.0 1.7 3.6E-05 45.1 7.8 24 40-63 24-47 (182)
464 PRK13695 putative NTPase; Prov 88.0 3.6 7.9E-05 42.2 10.2 20 44-63 2-21 (174)
465 TIGR01420 pilT_fam pilus retra 88.0 0.41 8.9E-06 55.1 3.5 24 41-64 121-144 (343)
466 cd03282 ABC_MSH4_euk MutS4 hom 87.9 0.59 1.3E-05 49.6 4.4 22 41-62 28-49 (204)
467 PRK08769 DNA polymerase III su 87.9 2.2 4.8E-05 48.5 9.2 41 136-178 112-152 (319)
468 cd03243 ABC_MutS_homologs The 87.9 1.4 3.1E-05 46.5 7.3 23 41-63 28-50 (202)
469 PRK11034 clpA ATP-dependent Cl 87.9 3.5 7.6E-05 52.3 11.9 19 42-60 207-225 (758)
470 PF12846 AAA_10: AAA-like doma 87.9 0.46 1E-05 52.8 3.8 36 42-77 1-38 (304)
471 PRK13764 ATPase; Provisional 87.9 0.72 1.6E-05 56.5 5.6 30 34-63 248-278 (602)
472 PF13671 AAA_33: AAA domain; P 87.8 0.49 1.1E-05 46.5 3.5 24 44-67 1-24 (143)
473 PRK03992 proteasome-activating 87.7 2.7 5.9E-05 49.2 10.2 24 43-66 166-189 (389)
474 COG0630 VirB11 Type IV secreto 87.7 0.75 1.6E-05 52.2 5.3 33 35-67 136-168 (312)
475 PRK10787 DNA-binding ATP-depen 87.6 1.2 2.7E-05 56.6 7.7 37 27-63 326-370 (784)
476 cd03214 ABC_Iron-Siderophores_ 87.6 1.2 2.5E-05 46.2 6.3 24 40-63 23-46 (180)
477 PRK09354 recA recombinase A; P 87.5 0.94 2E-05 51.9 5.9 27 40-66 58-84 (349)
478 TIGR03345 VI_ClpV1 type VI sec 87.4 2.7 5.9E-05 54.2 10.7 18 43-60 209-226 (852)
479 CHL00095 clpC Clp protease ATP 87.3 2.6 5.6E-05 54.4 10.4 17 44-60 541-557 (821)
480 PTZ00454 26S protease regulato 87.3 3.3 7.2E-05 48.6 10.5 25 42-66 179-203 (398)
481 PRK06305 DNA polymerase III su 87.3 2.2 4.7E-05 51.0 9.1 30 34-63 28-60 (451)
482 PHA03372 DNA packaging termina 87.2 3.4 7.4E-05 50.1 10.4 139 42-191 202-349 (668)
483 COG1136 SalX ABC-type antimicr 87.1 0.34 7.4E-06 52.0 2.0 24 39-62 28-51 (226)
484 TIGR03263 guanyl_kin guanylate 87.1 0.49 1.1E-05 48.7 3.1 23 42-64 1-23 (180)
485 PRK07399 DNA polymerase III su 87.1 5.9 0.00013 45.0 12.1 51 123-177 111-161 (314)
486 PRK11174 cysteine/glutathione 87.0 2.1 4.6E-05 52.9 9.2 25 40-64 374-398 (588)
487 KOG1969 DNA replication checkp 86.9 1.4 3E-05 54.0 7.0 26 42-67 326-351 (877)
488 COG0466 Lon ATP-dependent Lon 86.9 2.3 5E-05 52.2 8.9 107 26-162 326-444 (782)
489 COG0396 sufC Cysteine desulfur 86.8 0.34 7.4E-06 51.6 1.7 39 137-176 162-201 (251)
490 TIGR03346 chaperone_ClpB ATP-d 86.6 3.9 8.4E-05 53.0 11.5 16 44-59 597-612 (852)
491 TIGR00767 rho transcription te 86.4 0.65 1.4E-05 53.9 3.9 25 39-63 165-189 (415)
492 TIGR02012 tigrfam_recA protein 86.4 0.8 1.7E-05 51.9 4.6 28 39-66 52-79 (321)
493 PRK10865 protein disaggregatio 86.4 2.6 5.6E-05 54.5 9.7 36 27-62 179-219 (857)
494 KOG0733 Nuclear AAA ATPase (VC 86.3 2.5 5.5E-05 50.8 8.6 54 15-68 502-571 (802)
495 PRK08233 hypothetical protein; 86.3 0.8 1.7E-05 47.0 4.3 25 42-66 3-27 (182)
496 cd03223 ABCD_peroxisomal_ALDP 86.3 1.9 4.2E-05 44.0 7.0 25 39-63 24-48 (166)
497 TIGR02974 phageshock_pspF psp 86.0 3.6 7.7E-05 47.1 9.6 37 28-65 8-44 (329)
498 PRK14729 miaA tRNA delta(2)-is 86.0 0.62 1.3E-05 52.3 3.3 25 41-65 3-27 (300)
499 PF06745 KaiC: KaiC; InterPro 85.7 0.87 1.9E-05 48.9 4.3 34 41-74 18-55 (226)
500 PRK00300 gmk guanylate kinase; 85.7 0.64 1.4E-05 49.0 3.2 25 40-64 3-27 (205)
No 1
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-116 Score=984.98 Aligned_cols=585 Identities=27% Similarity=0.384 Sum_probs=520.5
Q ss_pred CcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC----cEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME----PILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 22 ~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~----~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
.|+.|||++++++++.++.+|+++||.|+||||||||+||||.|.|.. +|.||||||+||+++|.||++|+|+.+|
T Consensus 260 ~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 260 VRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred HHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 388999999999999999999999999999999999999999999873 4999999999999999999999999999
Q ss_pred CeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEee
Q 001758 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1017)
Q Consensus 98 ~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSA 177 (1017)
..|||+|+|++.++.+|.|.|||+|||++++...+ .+..|++|||||||||++++|+|.+++|++.+.||++|++++||
T Consensus 340 ~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSA 418 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSA 418 (902)
T ss_pred cccceEEEeccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeecc
Confidence 99999999999999999999999999999999765 36699999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhH
Q 001758 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1017)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1017)
|+|+++|+.||++ ++++.+|+ +.|||.++|... +..+|
T Consensus 419 T~DAekFS~fFDd------apIF~iPG----RRyPVdi~Yt~~-----------------------PEAdY--------- 456 (902)
T KOG0923|consen 419 TMDAEKFSAFFDD------APIFRIPG----RRYPVDIFYTKA-----------------------PEADY--------- 456 (902)
T ss_pred ccCHHHHHHhccC------CcEEeccC----cccceeeecccC-----------------------CchhH---------
Confidence 9999999999987 78899997 679999987442 22233
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhc-------CCCCCcEEEEecCCCCHHHHHHHHHhccCC-cE
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK-------PLSSFFKVHILHSSVDTEQALMAMKICKSH-RK 329 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~-------~~~~~~~v~~lHs~l~~~er~~i~~~f~~g-rk 329 (1017)
.+.....+..||.+.+ .|+||||+.|.++|+...+.|. .....+-|.|+|++||.+.|.+|++.-+.| ||
T Consensus 457 ldAai~tVlqIH~tqp--~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRK 534 (902)
T KOG0923|consen 457 LDAAIVTVLQIHLTQP--LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARK 534 (902)
T ss_pred HHHHHhhheeeEeccC--CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCcee
Confidence 3444467888998887 5899999999999987666554 334567899999999999999999876554 69
Q ss_pred EEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhc-cccc
Q 001758 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG-TLED 408 (1017)
Q Consensus 330 VIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~-~l~~ 408 (1017)
||+||||||+||||++|+||||+|++|+..|++.+++++|.++|||||++.||+|||||++||+|||||+...|+ .+.+
T Consensus 535 VVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~ 614 (902)
T KOG0923|consen 535 VVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEE 614 (902)
T ss_pred EEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998775 7888
Q ss_pred cCCchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccccchhhhcccC
Q 001758 409 HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFS 488 (1017)
Q Consensus 409 ~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lP 488 (1017)
.+.|||+|+||.++||.|++ ||..+.+.|+|||||+.+++..|++.|..||||+.. | +||.+||.|++||
T Consensus 615 ~t~PEIqRtnL~nvVL~LkS-----LGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~---G--eLTk~GrrMaEfP 684 (902)
T KOG0923|consen 615 MTVPEIQRTNLGNVVLLLKS-----LGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHL---G--ELTKLGRRMAEFP 684 (902)
T ss_pred CCCcceeeccchhHHHHHHh-----cCcchhcccccCCCCChHHHHHHHHHHHHhhccccc---c--chhhhhhhhhhcC
Confidence 99999999999999999964 334445667999999999999999999999999984 6 6999999999999
Q ss_pred CChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHHHHHhhCcccCCCCccccccccchhhHHHHHHHHHHH
Q 001758 489 LSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFW 568 (1017)
Q Consensus 489 ldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~f~~~~~D~~~~~~~~~~~~l~~l~af~~w 568 (1017)
+||++||||+.+..++|..|+++||||||+.+.+|.+|.+++..|+.++..|.++.|| |+.+|++|+.|
T Consensus 685 ~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gD-----------hi~~L~vyn~w 753 (902)
T KOG0923|consen 685 VDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGD-----------HIVLLNVYNQW 753 (902)
T ss_pred CCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcc-----------hhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999998899999999888776 88899999999
Q ss_pred HHHHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC---CCCcCC
Q 001758 569 QHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG---LPTYYD 645 (1017)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~~~~~---~~~~~~ 645 (1017)
.+ .+...+||.+||+++++|.++++||.||..++.+..+...+..+. ..+.+.
T Consensus 754 ~e------------------------s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~ 809 (902)
T KOG0923|consen 754 KE------------------------SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAIT 809 (902)
T ss_pred hh------------------------cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHh
Confidence 76 466789999999999999999999999999999887766543321 113334
Q ss_pred Ccchhhhhcc------------------------cCCCCCCCccccccccCCCCccccceecc----------cCccCcC
Q 001758 646 PYEFEHTCLL------------------------NCDPPRDMDPLAADNEHLGPSFEAKKCVA----------VPFVAPN 691 (1017)
Q Consensus 646 ~~~~~h~~~l------------------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----------~py~~~~ 691 (1017)
..+|.|.|.+ ..+|.|++||++++|+ ++|+|.|+. |+||...
T Consensus 810 aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~ts----ke~mr~~~e~e~~Wlie~aphyyk~k 885 (902)
T KOG0923|consen 810 AGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTS----KEFMRQVIEIEEEWLIEVAPHYYKLK 885 (902)
T ss_pred ccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcCh----HHHHHHHHhhhhhHHHHhchhhhhhh
Confidence 4555555532 2578999999999999 999999987 9999988
Q ss_pred ccccchHHH
Q 001758 692 QFQSNNVAE 700 (1017)
Q Consensus 692 ~f~~~e~k~ 700 (1017)
++.+..+++
T Consensus 886 dled~~~kk 894 (902)
T KOG0923|consen 886 DLEDATNKK 894 (902)
T ss_pred hcccccccc
Confidence 887665543
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-115 Score=992.30 Aligned_cols=570 Identities=31% Similarity=0.480 Sum_probs=507.1
Q ss_pred CccCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC---cEEEeccHHHHHHHHHHHHHhhcCCc
Q 001758 19 TSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGRNCE 95 (1017)
Q Consensus 19 ~~~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~---~IivtqPrrlaa~s~a~rva~e~~~~ 95 (1017)
+..+|+.|||++++.+|+.++.+|+++||.|+||||||||+||||++.++. +|.||||||+||+++|+|||+|+++.
T Consensus 43 i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~ 122 (674)
T KOG0922|consen 43 IQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQ 122 (674)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCC
Confidence 355678899999999999999999999999999999999999999999885 59999999999999999999999999
Q ss_pred cCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 96 LGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 96 lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
+|+.|||.|||++.++.+|+|+|+|+|+|||++..+++ +.+|++|||||||||++++|+|+++||.++.+|+++|+|+|
T Consensus 123 lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIim 201 (674)
T KOG0922|consen 123 LGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIM 201 (674)
T ss_pred cCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999999987764 56999999999999999999999999999999999999999
Q ss_pred eeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccch
Q 001758 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1017)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1017)
|||+|+++|++||++ ++++.+|+ +.|||++.|+.. +..+
T Consensus 202 SATlda~kfS~yF~~------a~i~~i~G----R~fPVei~y~~~-----------------------p~~d-------- 240 (674)
T KOG0922|consen 202 SATLDAEKFSEYFNN------APILTIPG----RTFPVEILYLKE-----------------------PTAD-------- 240 (674)
T ss_pred eeeecHHHHHHHhcC------CceEeecC----CCCceeEEeccC-----------------------Cchh--------
Confidence 999999999999986 67888887 689999988652 2222
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCC------CCcEEEEecCCCCHHHHHHHHHhcc-CCc
Q 001758 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------SFFKVHILHSSVDTEQALMAMKICK-SHR 328 (1017)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~------~~~~v~~lHs~l~~~er~~i~~~f~-~gr 328 (1017)
..+.....+..||.+++ .|+||||++|+++|+.+++.|.... ....+.++||.|+.++|.+++...+ +.|
T Consensus 241 -Yv~a~~~tv~~Ih~~E~--~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~R 317 (674)
T KOG0922|consen 241 -YVDAALITVIQIHLTEP--PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKR 317 (674)
T ss_pred -hHHHHHHHHHHHHccCC--CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcc
Confidence 23334477888998876 6899999999999999999887531 1125789999999999999988776 446
Q ss_pred EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhccccc
Q 001758 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLED 408 (1017)
Q Consensus 329 kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~~l~~ 408 (1017)
|||+||||||+|||||+|+||||+|++|++.|++..+++++.++|||||+|.||+|||||++||+|||||++++|+.|++
T Consensus 318 KvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~ 397 (674)
T KOG0922|consen 318 KVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPL 397 (674)
T ss_pred eEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCcccccc-chhhhccc
Q 001758 409 HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTF-YGRLLASF 487 (1017)
Q Consensus 409 ~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~-lG~~la~l 487 (1017)
.++|||+|++|+..+|+||++ +++++ +.|+|+|||+++++..|++.|..+||||++ | .+|. +|+.|++|
T Consensus 398 ~~~PEI~R~~Ls~~vL~Lkal---gi~d~--l~F~f~d~P~~~~l~~AL~~L~~lgald~~---g--~lt~p~G~~ma~~ 467 (674)
T KOG0922|consen 398 QTVPEIQRVNLSSAVLQLKAL---GINDP--LRFPFIDPPPPEALEEALEELYSLGALDDR---G--KLTSPLGRQMAEL 467 (674)
T ss_pred CCCCceeeechHHHHHHHHhc---CCCCc--ccCCCCCCCChHHHHHHHHHHHhcCcccCc---C--CcCchHHhhhhhc
Confidence 999999999999999999753 34444 556999999999999999999999999984 6 4787 99999999
Q ss_pred CCChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHH-HHHhhCcccCCCCccccccccchhhHHHHHHHHH
Q 001758 488 SLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDAL-FAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQ 566 (1017)
Q Consensus 488 Pldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~-a~~~~~~f~~~~~D~~~~~~~~~~~~l~~l~af~ 566 (1017)
|++|.++|+|+.+.++||..|+++||||||+++ .|.+|.+++.. ++..+.+|++++|| |++.||+|+
T Consensus 468 Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~-~f~~p~~~~~~~a~~~~~kf~~~eGD-----------h~tlL~vy~ 535 (674)
T KOG0922|consen 468 PLEPHLSKMLLKSSELGCSEEILTIAAMLSVQS-VFSRPKDKKAEDADRKRAKFANPEGD-----------HLTLLNVYE 535 (674)
T ss_pred CCCcchhhhhhhccccCCcchhhhheeeeeccc-eecCccchhhhhhhHHHHhhcCcccC-----------HHHHHHHHH
Confidence 999999999999999999999999999999886 89999988877 88899999999997 778889999
Q ss_pred HHHHHHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC----C
Q 001758 567 FWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLP----T 642 (1017)
Q Consensus 567 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~~~~~~~----~ 642 (1017)
.|.+ ++..++||++||||+++|+.+.+||+||.+++.++++...+ ..+++ +
T Consensus 536 ~~~~------------------------~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s-~~~d~~~i~k 590 (674)
T KOG0922|consen 536 SWKE------------------------NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSS-CGGDMEKIRK 590 (674)
T ss_pred HHHh------------------------cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccC-CCCCHHHHHH
Confidence 9975 35568999999999999999999999999999998887733 33322 2
Q ss_pred cCCCcchhhhh------------------------cccCCCCCCCccccccccCCCCccccceecc
Q 001758 643 YYDPYEFEHTC------------------------LLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 684 (1017)
Q Consensus 643 ~~~~~~~~h~~------------------------~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 684 (1017)
+.....|.+.| +....|+|++||+++.|+ +.|+|.|+.
T Consensus 591 ~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Tt----k~Y~r~Vt~ 652 (674)
T KOG0922|consen 591 CLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTT----KEYMRNVTA 652 (674)
T ss_pred HHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCCCCEEEEEEEeecc----hHhHhheee
Confidence 22223333333 333569999999999999 999999998
No 3
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-114 Score=944.77 Aligned_cols=589 Identities=28% Similarity=0.422 Sum_probs=520.0
Q ss_pred CcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC---CcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 001758 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1017)
Q Consensus 22 ~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~---~~IivtqPrrlaa~s~a~rva~e~~~~lg~ 98 (1017)
.|..||||.++++.++.+.+||.+|++|+||||||||+|||+++... +.|.||||||++|+++|+||++|++..+|.
T Consensus 42 ~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~ 121 (699)
T KOG0925|consen 42 KRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGE 121 (699)
T ss_pred HHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccch
Confidence 36789999999999999999999999999999999999999987643 579999999999999999999999999999
Q ss_pred eeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 99 ~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
+|||.|+|++..+++|-+.|||+|||+++..++++ +.+|++||+||||||++.+|.|++++|.+...+||+|+|+||||
T Consensus 122 EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSat 200 (699)
T KOG0925|consen 122 EVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSAT 200 (699)
T ss_pred hccccccccccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecc
Confidence 99999999999999999999999999999887764 56999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHH
Q 001758 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (1017)
Q Consensus 179 ld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1017)
+++++|..||++ ++++.+|+ .+|++++|..+ ...+..
T Consensus 201 l~a~Kfq~yf~n------~Pll~vpg-----~~PvEi~Yt~e--------------------------------~erDyl 237 (699)
T KOG0925|consen 201 LDAEKFQRYFGN------APLLAVPG-----THPVEIFYTPE--------------------------------PERDYL 237 (699)
T ss_pred cchHHHHHHhCC------CCeeecCC-----CCceEEEecCC--------------------------------CChhHH
Confidence 999999999987 67778876 57888887543 223455
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC-------CCCCcEEEEecCCCCHHHHHHHHHhcc------
Q 001758 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------LSSFFKVHILHSSVDTEQALMAMKICK------ 325 (1017)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-------~~~~~~v~~lHs~l~~~er~~i~~~f~------ 325 (1017)
+.+..++.+||..+. .|+||||+++.++|+..++.+.. ....+.|++|| +.++..+++...
T Consensus 238 EaairtV~qih~~ee--~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~ 311 (699)
T KOG0925|consen 238 EAAIRTVLQIHMCEE--PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGA 311 (699)
T ss_pred HHHHHHHHHHHhccC--CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCC
Confidence 666688899998876 68999999999999999988763 23457899999 444555554332
Q ss_pred CCcEEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhc-
Q 001758 326 SHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG- 404 (1017)
Q Consensus 326 ~grkVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~- 404 (1017)
.+|||||+||+||++++|++|.+|||+|+.|++.|+|+..++++.+.||||++|.||+|||||++||+|||||+++.|+
T Consensus 312 ~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 312 YGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred ccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 2579999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred cccccCCchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccccchhhh
Q 001758 405 TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLL 484 (1017)
Q Consensus 405 ~l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~l 484 (1017)
+|.+.+.|||+|++|.++||+||.++ +.+. ..|+|+|||.++++.+|++.|..++|||++ | .||++|..|
T Consensus 392 em~~~typeilrsNL~s~VL~LKklg---I~dl--vhfdfmDpPAPEtLMrALE~LnYLaaLdDd---G--nLT~lG~im 461 (699)
T KOG0925|consen 392 EMQPQTYPEILRSNLSSTVLQLKKLG---IDDL--VHFDFMDPPAPETLMRALEVLNYLAALDDD---G--NLTSLGEIM 461 (699)
T ss_pred cCCCCCcHHHHHHhhHHHHHHHHhcC---cccc--cCCcCCCCCChHHHHHHHHHhhhhhhhCCC---c--ccchhhhhh
Confidence 89999999999999999999997533 4444 345999999999999999999999999984 7 499999999
Q ss_pred cccCCChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCC-CchHHHHHhhCcccCCCCccccccccchhhHHHHHH
Q 001758 485 ASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPF-GDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLC 563 (1017)
Q Consensus 485 a~lPldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~-~~~~~a~~~~~~f~~~~~D~~~~~~~~~~~~l~~l~ 563 (1017)
++|||||++|||||.+++|.|.+|+++|+||||+.+ .|.+|. +.+++|+.++..|.|.||| |+++ +|
T Consensus 462 SEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPn-cFvRp~~~a~kaAdeak~~faH~dGD--------HlTL---ln 529 (699)
T KOG0925|consen 462 SEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPN-CFVRPTSSASKAADEAKETFAHIDGD--------HLTL---LN 529 (699)
T ss_pred hcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCc-cccCCChhHHHHHHHHHHHhccCCcc--------hHHH---HH
Confidence 999999999999999999999999999999999865 899998 7788899999999999998 5555 55
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCc
Q 001758 564 AFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTY 643 (1017)
Q Consensus 564 af~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~~ 643 (1017)
+|++|++ ++...+||++||||+++|+.+.++|.||+++|.|+++++.+...+.+.|
T Consensus 530 VYhAfkq------------------------~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y 585 (699)
T KOG0925|consen 530 VYHAFKQ------------------------NNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDY 585 (699)
T ss_pred HHHHHHh------------------------cCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhH
Confidence 6655533 2456789999999999999999999999999999999998888887877
Q ss_pred CCCcchhhhh------------------------------cccCCCCCCCccccccccCCCCccccceecc---------
Q 001758 644 YDPYEFEHTC------------------------------LLNCDPPRDMDPLAADNEHLGPSFEAKKCVA--------- 684 (1017)
Q Consensus 644 ~~~~~~~h~~------------------------------~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--------- 684 (1017)
|.++.....+ -+...|+|++||+|++|+ +||||+|++
T Consensus 586 ~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~----~N~ir~vt~I~pewlv~l 661 (699)
T KOG0925|consen 586 YVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTT----KNFIRTVTDIRPEWLVEL 661 (699)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeec----cceeeeecccCHHHHHHh
Confidence 7554332222 223689999999999999 999999998
Q ss_pred -cCccCcCccccchHHHHHHHHHHHhh
Q 001758 685 -VPFVAPNQFQSNNVAEKLASIIKEIR 710 (1017)
Q Consensus 685 -~py~~~~~f~~~e~k~~L~kiiKe~r 710 (1017)
|+||++++|+++|+|+.|+++.+..+
T Consensus 662 aP~YydlsNfp~~e~k~~L~~~~~~~~ 688 (699)
T KOG0925|consen 662 APQYYDLSNFPPSEAKRALEQLYKVRR 688 (699)
T ss_pred chhhcccccCCchHHHHHHHHHHHHHh
Confidence 99999999999999999998544433
No 4
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-111 Score=946.83 Aligned_cols=571 Identities=27% Similarity=0.409 Sum_probs=505.5
Q ss_pred CccCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC---cEEEeccHHHHHHHHHHHHHhhcCCc
Q 001758 19 TSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGRNCE 95 (1017)
Q Consensus 19 ~~~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~---~IivtqPrrlaa~s~a~rva~e~~~~ 95 (1017)
..-+++.|||+..+.+++..|.+|++|||+|+||||||||++|||++.|+. .|.||||||+||+++|+||++|++..
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 455577899999999999999999999999999999999999999999874 79999999999999999999999999
Q ss_pred cCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 96 LGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 96 lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
+|..|||.|||++.+++.|.|.|||+|+||++...+. .+.+|++||+||||||++|+|++++++|.++.+|.|+|+|++
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEe
Confidence 9999999999999999999999999999999976543 245999999999999999999999999999999999999999
Q ss_pred eeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccch
Q 001758 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1017)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1017)
|||+|+++|++||++ ++.+++|+ +.|||++.|..... .
T Consensus 507 SATm~a~kf~nfFgn------~p~f~IpG----RTyPV~~~~~k~p~--------------------------------e 544 (1042)
T KOG0924|consen 507 SATMDAQKFSNFFGN------CPQFTIPG----RTYPVEIMYTKTPV--------------------------------E 544 (1042)
T ss_pred eccccHHHHHHHhCC------CceeeecC----CccceEEEeccCch--------------------------------H
Confidence 999999999999986 56778886 68999988754321 1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC--------CCCCcEEEEecCCCCHHHHHHHHHhccCC
Q 001758 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--------LSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1017)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--------~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1017)
+..+....-...||...+ .|+||||.+|+++++-.+..+.. ...++.|+++|+.||.+-|.+++....++
T Consensus 545 DYVeaavkq~v~Ihl~~~--~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~ 622 (1042)
T KOG0924|consen 545 DYVEAAVKQAVQIHLSGP--PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG 622 (1042)
T ss_pred HHHHHHHhhheEeeccCC--CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC
Confidence 223333344556776665 68999999999999876665542 12368999999999999999998855544
Q ss_pred -cEEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhh-cc
Q 001758 328 -RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF-GT 405 (1017)
Q Consensus 328 -rkVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~-~~ 405 (1017)
||+||||||||+|+|||+|.||||+|++|.+.|++..+++.|.+.|||+|++.||+|||||++||.|||||++..| ++
T Consensus 623 vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~e 702 (1042)
T KOG0924|consen 623 VRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNE 702 (1042)
T ss_pred ceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhh
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999766 58
Q ss_pred ccccCCchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccccchhhhc
Q 001758 406 LEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLA 485 (1017)
Q Consensus 406 l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la 485 (1017)
|.+.++|||+|++|.+++|.|++++ ..+..-|+|+|||+.+.+..++..|..||||+.. | .||++|+.|+
T Consensus 703 ml~stvPEIqRTNl~nvVLlLkslg-----V~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~---g--~LT~lG~~Mv 772 (1042)
T KOG0924|consen 703 MLPSTVPEIQRTNLSNVVLLLKSLG-----VDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNT---G--QLTPLGRKMV 772 (1042)
T ss_pred cccCCCchhhhcchhhHHHHHHhcC-----hhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccC---C--ccchhhHHhh
Confidence 9999999999999999999997533 3334456999999999999999999999999984 6 5999999999
Q ss_pred ccCCChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHHHHHhhCcccCCCCccccccccchhhHHHHHHHH
Q 001758 486 SFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAF 565 (1017)
Q Consensus 486 ~lPldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~f~~~~~D~~~~~~~~~~~~l~~l~af 565 (1017)
+|||||.++||||.++.+||.+|+++|++|||+.. .|.+|.++++.++.++.+|+++++| ||++||+|
T Consensus 773 efpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~-VF~rpker~eead~ar~Kf~~~~sD-----------hLTlLNVf 840 (1042)
T KOG0924|consen 773 EFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPA-VFYRPKEREEEADAAREKFQVPESD-----------HLTLLNVF 840 (1042)
T ss_pred hCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccc-eeeccccchhhhhhHHhhhcCCCCc-----------hhhHHHHH
Confidence 99999999999999999999999999999999865 8999999999999999999999987 78888999
Q ss_pred HHHHHHHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC--CCCc
Q 001758 566 QFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG--LPTY 643 (1017)
Q Consensus 566 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~~~~~--~~~~ 643 (1017)
++|.+ +++...||.+|||+.++|+.++++|.||+.+|+.+++++.++.+- ..++
T Consensus 841 ~qw~~------------------------~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~dwdivrKC 896 (1042)
T KOG0924|consen 841 NQWRK------------------------NKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSDDWDIVRKC 896 (1042)
T ss_pred HHHHh------------------------cCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCchHHHHHHH
Confidence 99976 356688999999999999999999999999999999998775221 2256
Q ss_pred CCCcchhhhh-----------------------cccC--CCCCCCccccccccCCCCccccceecc
Q 001758 644 YDPYEFEHTC-----------------------LLNC--DPPRDMDPLAADNEHLGPSFEAKKCVA 684 (1017)
Q Consensus 644 ~~~~~~~h~~-----------------------~l~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~ 684 (1017)
+++.+|++.| .|+| .|+.++||+++.|+ ++|++-|++
T Consensus 897 Ics~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~----keym~cvT~ 958 (1042)
T KOG0924|consen 897 ICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTT----KEYMQCVTS 958 (1042)
T ss_pred HHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhH----HHHHHHHhh
Confidence 6666666666 3334 48999999999999 999999998
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.2e-98 Score=935.65 Aligned_cols=582 Identities=25% Similarity=0.391 Sum_probs=494.6
Q ss_pred CCCCccCc-CCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC---cEEEeccHHHHHHHHHHHHHhh
Q 001758 16 SPFTSPEF-SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKG 91 (1017)
Q Consensus 16 ~~~~~~~r-~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~---~IivtqPrrlaa~s~a~rva~e 91 (1017)
...|.... .+|||+.++++|+++|.+|+++||+|+||||||||+|+++++.+.+ .|+||||||++|+++|.||+++
T Consensus 62 ~~~p~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 62 AARPEITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred hhCcccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHH
Confidence 34555554 4799999999999999999999999999999999999999987653 7999999999999999999999
Q ss_pred cCCccCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCce
Q 001758 92 RNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1017)
Q Consensus 92 ~~~~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lk 171 (1017)
++..+|..|||.+++++..+.+++|+|||||+|++++..+.+ +.+|++|||||||||++++||++++++.++.+++++|
T Consensus 142 l~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlK 220 (1294)
T PRK11131 142 LETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLK 220 (1294)
T ss_pred HhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcCCCce
Confidence 999999999999999999999999999999999999987654 6799999999999999999999999999999899999
Q ss_pred EEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 001758 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1017)
Q Consensus 172 lIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1017)
+|+||||++.+.|.+||.+ .+++.+++ +.|++++.|..... .+.
T Consensus 221 vILmSATid~e~fs~~F~~------apvI~V~G----r~~pVei~y~p~~~--------------------------~~~ 264 (1294)
T PRK11131 221 VIITSATIDPERFSRHFNN------APIIEVSG----RTYPVEVRYRPIVE--------------------------EAD 264 (1294)
T ss_pred EEEeeCCCCHHHHHHHcCC------CCEEEEcC----ccccceEEEeeccc--------------------------ccc
Confidence 9999999999999999964 23455654 45777777643100 000
Q ss_pred ccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHHHhccCCcEE
Q 001758 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKV 330 (1017)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~-~~~~v~~lHs~l~~~er~~i~~~f~~grkV 330 (1017)
....+....+.+.+..++.. ..|+||||+||+++|+.+++.|.... ....|.++||+|+.++|..+++.. ++++|
T Consensus 265 ~~~~d~l~~ll~~V~~l~~~---~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-g~rkI 340 (1294)
T PRK11131 265 DTERDQLQAIFDAVDELGRE---GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-SGRRI 340 (1294)
T ss_pred hhhHHHHHHHHHHHHHHhcC---CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-CCeeE
Confidence 00112222333334444432 25899999999999999999998643 345689999999999999998763 45699
Q ss_pred EEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhccccccC
Q 001758 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHE 410 (1017)
Q Consensus 331 IVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~~l~~~~ 410 (1017)
|||||+||+|||||+|+||||+|++|.++||+.++++.+...|||+++|.||+|||||.++|+||+||++++|+.+++++
T Consensus 341 IVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~ 420 (1294)
T PRK11131 341 VLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFT 420 (1294)
T ss_pred EEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccccchhhhcccCCC
Q 001758 411 CPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLS 490 (1017)
Q Consensus 411 ~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPld 490 (1017)
.|||+|++|+++||+|+.+ +++++..| +|++||+.++|.+|++.|.++||||.++..+..+||++|+.|++||+|
T Consensus 421 ~PEIlR~~L~~viL~lk~l---gl~di~~F--~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPld 495 (1294)
T PRK11131 421 DPEILRTNLASVILQMTAL---GLGDIAAF--PFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVD 495 (1294)
T ss_pred CCccccCCHHHHHHHHHHc---CCCCccee--eCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCC
Confidence 9999999999999999754 45665555 899999999999999999999999863111223699999999999999
Q ss_pred hHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHHHHHhhCcccCCCCccccccccchhhHHHHHHHHHHHHH
Q 001758 491 FDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQH 570 (1017)
Q Consensus 491 p~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~f~~~~~D~~~~~~~~~~~~l~~l~af~~w~~ 570 (1017)
|++||||+.+..+||++|+++|||+||+++ ||.+|.+++++++..+.+|.+++|| |++++|+|+.|++
T Consensus 496 PrlakmLl~a~~~~c~~evl~IaA~Lsv~d-pf~~p~~~~~~a~~~~~~f~~~~sD-----------~lt~ln~~~~~~~ 563 (1294)
T PRK11131 496 PRLARMVLEAQKHGCVREVMIITSALSIQD-PRERPMDKQQASDEKHRRFADKESD-----------FLAFVNLWNYLQE 563 (1294)
T ss_pred hHHHHHHHHhhhcCCHHHHHHHHHHHcCCC-cccCCchhHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHH
Confidence 999999999999999999999999999987 9999999998899999999988886 8888999999976
Q ss_pred HHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCcCCCcchh
Q 001758 571 VFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFE 650 (1017)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 650 (1017)
..+.+ +.+..++||++||||+++|++|.++|.||.++++++++...+ .+. +++.+
T Consensus 564 ~~~~~------------------s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~----~~~---~~~~i 618 (1294)
T PRK11131 564 QQKAL------------------SSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNS----EPA---EYREI 618 (1294)
T ss_pred HHhhh------------------cchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCC----Ccc---cHHHH
Confidence 33211 134568899999999999999999999999999998875522 121 23444
Q ss_pred hhhcc----------------------------------cCCCCCCCccccccccCCCCccccceecc
Q 001758 651 HTCLL----------------------------------NCDPPRDMDPLAADNEHLGPSFEAKKCVA 684 (1017)
Q Consensus 651 h~~~l----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 684 (1017)
|+|++ ...|.|++|+|++.|+ +.|+|.|+.
T Consensus 619 ~~all~G~~~nva~~~~~~~~y~~~~~~~~~ihP~S~L~~~~p~wvv~~Elv~Ts----r~y~r~va~ 682 (1294)
T PRK11131 619 HTALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETS----RLWGRIAAR 682 (1294)
T ss_pred HHHHHhhcHHHHeeccCCCCeEEccCCcEEEEcCCccccCCCCCEEEEEeeeccC----hhhhhhhcc
Confidence 44422 2458999999999999 999999998
No 6
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2.9e-99 Score=907.47 Aligned_cols=739 Identities=29% Similarity=0.366 Sum_probs=575.2
Q ss_pred ccCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHHHHHhhcCC
Q 001758 20 SPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1017)
Q Consensus 20 ~~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~-----~~~IivtqPrrlaa~s~a~rva~e~~~ 94 (1017)
...|.+||++.++++|+++|.++++++|+|+||||||||+||++++.. ..+|+||||||++|+++|+||+.|++.
T Consensus 166 ~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 166 LRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred HHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 344789999999999999999999999999999999999999999864 458999999999999999999999999
Q ss_pred ccCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEE
Q 001758 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1017)
Q Consensus 95 ~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIl 174 (1017)
.+|..|||+||.++..+..|.+.|||.|+||+.++.++ .+.+++|||+||+|||++++||++.++|.++.++|++|+|+
T Consensus 246 ~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvIL 324 (924)
T KOG0920|consen 246 SLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVIL 324 (924)
T ss_pred ccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEE
Confidence 99999999999999998889999999999999998754 46699999999999999999999999999999999999999
Q ss_pred EeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCC-----cc
Q 001758 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS-----MA 249 (1017)
Q Consensus 175 mSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~ 249 (1017)
||||+|++.|++||++ .+++.+|+ +.||+..+|++++...+.......... .++... ..
T Consensus 325 MSAT~dae~fs~YF~~------~pvi~i~g----rtfpV~~~fLEDil~~~~~~~~~~~~~------~~~~~~~~~~~~~ 388 (924)
T KOG0920|consen 325 MSATLDAELFSDYFGG------CPVITIPG----RTFPVKEYFLEDILSKTGYVSEDDSAR------SGPERSQLRLARL 388 (924)
T ss_pred eeeecchHHHHHHhCC------CceEeecC----CCcchHHHHHHHHHHHhcccccccccc------cccccCccccccc
Confidence 9999999999999985 56788886 689999999999988775332211111 000000 00
Q ss_pred ccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCC-----CCCcEEEEecCCCCHHHHHHHHHhc
Q 001758 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-----SSFFKVHILHSSVDTEQALMAMKIC 324 (1017)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-----~~~~~v~~lHs~l~~~er~~i~~~f 324 (1017)
.........++|..++.+|+.... .|.||||+||+++|..+.+.|... ..++.++++|+.|+.++|+.+++..
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~~~--~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p 466 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDEREF--EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP 466 (924)
T ss_pred hhccccccHHHHHHHHHhcccCCC--CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC
Confidence 000111457889999999998743 689999999999999999998631 1347899999999999999999888
Q ss_pred cCC-cEEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhh
Q 001758 325 KSH-RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1017)
Q Consensus 325 ~~g-rkVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~ 403 (1017)
..| ||||+||||||+|||||||.||||+|+.|++.||+..++.++...|+|||++.||+|||||+++|+||+||++..|
T Consensus 467 p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 467 PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRY 546 (924)
T ss_pred CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhh
Confidence 777 4999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-cCCchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccccchh
Q 001758 404 GTLED-HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGR 482 (1017)
Q Consensus 404 ~~l~~-~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~ 482 (1017)
+.+.. ++.|||+|.+|.+++|++|+ ..++++..|+..+++||+.++|..|+..|..+|||+.+ .+||+||+
T Consensus 547 ~~~~~~~q~PEilR~pL~~l~L~iK~---l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~-----e~LT~LG~ 618 (924)
T KOG0920|consen 547 EKLMLAYQLPEILRTPLEELCLHIKV---LEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDES-----EELTPLGL 618 (924)
T ss_pred hhcccccCChHHHhChHHHhhheeee---ccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCc-----ccchHHHH
Confidence 98776 99999999999999999985 45778889999999999999999999999999999984 27999999
Q ss_pred hhcccCCChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHHHHHhhCcccCCCCccccccccchhhHHHHH
Q 001758 483 LLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNL 562 (1017)
Q Consensus 483 ~la~lPldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~f~~~~~D~~~~~~~~~~~~l~~l 562 (1017)
+|++||+||++|||++.+..|+|++++++|||+|+. .+||..|.++++.+++++..|...+ ++|||+++
T Consensus 619 ~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~-k~PF~~~~~~~~~~~~~~~~~~~~~----------~SD~la~~ 687 (924)
T KOG0920|consen 619 HLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSF-KSPFVSPLGKREEADKAKKLLALDS----------ISDHLAVV 687 (924)
T ss_pred HHHhCCCccccchhheehhhccccchhhhHHHHhcc-CCCcccCCCchhHHHHHHHHhccCC----------cchHHHHH
Confidence 999999999999999999999999999999999994 5599999999999999888876543 46799999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCC
Q 001758 563 CAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPT 642 (1017)
Q Consensus 563 ~af~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~ 642 (1017)
+||+.|+++.+.. ...+++||++||||..+|+++++++.|+.+.+.++++-. ....
T Consensus 688 ~ay~~w~~~~~~~-------------------~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~--~~~~--- 743 (924)
T KOG0920|consen 688 RAYAGWREILRSG-------------------PSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIP--ISST--- 743 (924)
T ss_pred HHHHHHHHHHhcc-------------------chHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccc--CCcc---
Confidence 9999999976521 256799999999999999999999999999999876522 1110
Q ss_pred cCCCcchhhhhcccCCCCCCCccccccccCCCCccccceecccCccCcCccccchHHHHHHHHHHHhhhccccccCcccC
Q 001758 643 YYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQD 722 (1017)
Q Consensus 643 ~~~~~~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~py~~~~~f~~~e~k~~L~kiiKe~r~q~~~~~~~~~~ 722 (1017)
+-++ .++. ...+.+.+-+|.|...+.|.+..+... .+++....
T Consensus 744 ----------~~~~-------~~~~--n~~s~~~~~iravl~a~lyP~i~~~~~--------------~~~~~~~~---- 786 (924)
T KOG0920|consen 744 ----------AALT-------DSEC--NHNSQNPELVRAVLCAGLYPNIAFVRR--------------MEPKSKSV---- 786 (924)
T ss_pred ----------cccC-------chhh--hhcCCCHHHHHHHHhccCCCceeeeec--------------ccCCcCcc----
Confidence 0000 0111 112234556677777776665544333 11001111
Q ss_pred cCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 001758 723 KAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDG 802 (1017)
Q Consensus 723 ~~~~~~~~~~~~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~ 802 (1017)
+|+..+ +-=-+.|. .+..+..++.|.. -|.|.+...+... ..-..|
T Consensus 787 ---------------~~~~~~-----~~~v~i~~------~sv~~~~~~~~~p--~l~~~~k~~t~~~-~~~rd~----- 832 (924)
T KOG0920|consen 787 ---------------TFVTKA-----DGRVIIHP------SSVNEQSTGFQSP--FLVFPEKVKSTRL-VSLRDT----- 832 (924)
T ss_pred ---------------eeecCC-----ceeEEEec------chhhccccccCCc--ceEEeeecccCCc-ceeeec-----
Confidence 011000 00011221 1112223344443 3555555532221 000001
Q ss_pred ccccccccccccCCCCCcccccCCccccccccccccCCCccccccCCCCCccccccccchhHHhhccccccchhcccCCC
Q 001758 803 VANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGD 882 (1017)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1017)
+..+....+ .+++..-. ....+..++..-+..-....++ +....++|.|++....++.+..+
T Consensus 833 --T~v~~~~~l---------lfgg~~~~------~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~Lr~~l~~~l~~~~~ 894 (924)
T KOG0920|consen 833 --TSVSSSALL---------LFGGGIST------VRMKSGSLALLLPDGWLRFKAL-PKTARLLKELRRELDSLLSKKIR 894 (924)
T ss_pred --CCCCcHHhe---------eecCCcee------ecCCCCccceecCCceEEeecc-hhHHHHHHHHHHHHHHHHHHhcc
Confidence 001111111 12221111 2222222333333344455677 88889999999999999999999
Q ss_pred CC-CCCcceeEEEecCCccccccchhHHH
Q 001758 883 NP-IPWKEVKCVLWYPSLESYSENLESQK 910 (1017)
Q Consensus 883 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1017)
+| ++| ...+..|.-...++.+-+.+++
T Consensus 895 ~p~~~~-~~~~~~~~~~~~~~~~~~~~~~ 922 (924)
T KOG0920|consen 895 SPCASL-PDSSGKGSESPSLIANLLVGEK 922 (924)
T ss_pred Cccccc-cccccccccchhhhhhhhhhhc
Confidence 65 469 8899999998888877666554
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.8e-95 Score=876.82 Aligned_cols=534 Identities=31% Similarity=0.410 Sum_probs=459.3
Q ss_pred CCCCCccCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC---CcEEEeccHHHHHHHHHHHHHhh
Q 001758 15 SSPFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKG 91 (1017)
Q Consensus 15 ~~~~~~~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~---~~IivtqPrrlaa~s~a~rva~e 91 (1017)
..+.+...+..|||+..+.+|++++.+|+++||+||||||||||+|++|++.++ ++|+||||||++|+++|+|++++
T Consensus 38 ~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 38 NVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred ccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHH
Confidence 344445668899999999999999999999999999999999999999999985 48999999999999999999999
Q ss_pred cCCccCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCC-Cc
Q 001758 92 RNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DL 170 (1017)
Q Consensus 92 ~~~~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~-~l 170 (1017)
+++.+|+.|||+|||++.++++|+|.|||+|+|+++++.+++ +..|++|||||||||++++|+++++++.++..++ |+
T Consensus 118 l~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 118 LGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred hCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999999999999999999999999999997764 6699999999999999999999999999877765 79
Q ss_pred eEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 001758 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (1017)
Q Consensus 171 klIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1017)
|+|+||||+|.++|++||++ ++++.+++ +.|||++.|.+... .++
T Consensus 197 KiIimSATld~~rfs~~f~~------apvi~i~G----R~fPVei~Y~~~~~-----------------------~d~-- 241 (845)
T COG1643 197 KLIIMSATLDAERFSAYFGN------APVIEIEG----RTYPVEIRYLPEAE-----------------------ADY-- 241 (845)
T ss_pred eEEEEecccCHHHHHHHcCC------CCEEEecC----CccceEEEecCCCC-----------------------cch--
Confidence 99999999999999999986 56777776 68999999865321 010
Q ss_pred cccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC--CCCCcEEEEecCCCCHHHHHHHHHhccCC-
Q 001758 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--LSSFFKVHILHSSVDTEQALMAMKICKSH- 327 (1017)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--~~~~~~v~~lHs~l~~~er~~i~~~f~~g- 327 (1017)
.+.+.+...+ .++..+ +.|+||||+||.++|+.+++.|.. ....+.|.|+||.|+.++|.++++....+
T Consensus 242 -----~l~~ai~~~v-~~~~~~--~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~ 313 (845)
T COG1643 242 -----ILLDAIVAAV-DIHLRE--GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGK 313 (845)
T ss_pred -----hHHHHHHHHH-HHhccC--CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCc
Confidence 0222332322 233333 379999999999999999999986 33578999999999999999999888777
Q ss_pred cEEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhcccc
Q 001758 328 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLE 407 (1017)
Q Consensus 328 rkVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~~l~ 407 (1017)
||||+||||||||||||+|+||||+|++|+++||+.++++.+.++|||||+|.||+|||||++||+|||||++++|..|+
T Consensus 314 RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~ 393 (845)
T COG1643 314 RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFP 393 (845)
T ss_pred ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhccHHHHHHHHHhhccccCC-ChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccccchhhhcc
Q 001758 408 DHECPAILRLSLRLQVLLICCAESKAIS-DPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLAS 486 (1017)
Q Consensus 408 ~~~~PEI~r~~L~~~vL~l~~~~~~~l~-~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~ 486 (1017)
+++.|||+|++|++++|+|+.++ ++ ++. .|+|+|||+..++.+|++.|.++||||.. | .||++|+.|+.
T Consensus 394 ~~t~PEIlrtdLs~~vL~l~~~G---~~~d~~--~f~fld~P~~~~i~~A~~~L~~LGAld~~---g--~LT~lG~~ms~ 463 (845)
T COG1643 394 EFTLPEILRTDLSGLVLQLKSLG---IGQDIA--PFPFLDPPPEAAIQAALTLLQELGALDDS---G--KLTPLGKQMSL 463 (845)
T ss_pred cCCChhhhhcchHHHHHHHHhcC---CCCCcc--cCccCCCCChHHHHHHHHHHHHcCCcCCC---C--CCCHHHHHHHh
Confidence 99999999999999999997654 43 444 44999999999999999999999999984 5 49999999999
Q ss_pred cCCChHHHHHHHHccccCchhhHHHHHHHhccCC--CcccCCCCchH---HHHHhh-CcccCCCCccccccccchhhHHH
Q 001758 487 FSLSFDASVLVLKFGEIGMLREGILLGILMDTQP--LPILHPFGDDA---LFAEYT-GCYFGGDGNTRLLTGRKEMVIMG 560 (1017)
Q Consensus 487 lPldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~--~~~~~P~~~~~---~a~~~~-~~f~~~~~D~~~~~~~~~~~~l~ 560 (1017)
||+||++|+||+.+.+.||+.|+++||||||+++ +.|.++.+.++ +++..+ ..+.+ .. ....+++.
T Consensus 464 lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~-~~-------~~~~d~~~ 535 (845)
T COG1643 464 LPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRN-AA-------DPRGDHLL 535 (845)
T ss_pred CCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhcc-CC-------CcchHHHH
Confidence 9999999999999999999999999999999987 13666665554 333333 22322 00 01235888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 001758 561 NLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHR 628 (1017)
Q Consensus 561 ~l~af~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~ 628 (1017)
.+++|..|....+.. ..-...+||+.++++.++|.++..++.|++..+.+
T Consensus 536 ll~~~~~~i~~~~~~------------------~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~ 585 (845)
T COG1643 536 LLEAFPDRIARKRAK------------------GEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSA 585 (845)
T ss_pred HHHHHHHHHHhhhcc------------------chhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhc
Confidence 899999997643200 01246789999999999999999999999998877
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.4e-94 Score=901.03 Aligned_cols=577 Identities=25% Similarity=0.392 Sum_probs=489.5
Q ss_pred CCccC-cCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC---CcEEEeccHHHHHHHHHHHHHhhcC
Q 001758 18 FTSPE-FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRN 93 (1017)
Q Consensus 18 ~~~~~-r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~---~~IivtqPrrlaa~s~a~rva~e~~ 93 (1017)
.|... +.+|||+.++.+|+++|.+|+++||+|+||||||||+|+++++.+. ++|+||||||++|+++|.|+++++|
T Consensus 57 ~~~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg 136 (1283)
T TIGR01967 57 VPEIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELG 136 (1283)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhC
Confidence 44444 3579999999999999999999999999999999999999999764 3799999999999999999999999
Q ss_pred CccCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEE
Q 001758 94 CELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1017)
Q Consensus 94 ~~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklI 173 (1017)
+.+|..|||++++++..+.+|+|+|||+|+|++++..+++ +.+|++|||||||||++++|+++++++.++..++++|+|
T Consensus 137 ~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlI 215 (1283)
T TIGR01967 137 TPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKII 215 (1283)
T ss_pred CCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEE
Confidence 9999999999999999999999999999999999987653 569999999999999999999999999999999999999
Q ss_pred EEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 001758 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (1017)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1017)
+||||++.+.|++||++ .+++.+++ +.|++++.|..... . ....
T Consensus 216 lmSATld~~~fa~~F~~------apvI~V~G----r~~PVev~Y~~~~~-----------------------~---~~~~ 259 (1283)
T TIGR01967 216 ITSATIDPERFSRHFNN------APIIEVSG----RTYPVEVRYRPLVE-----------------------E---QEDD 259 (1283)
T ss_pred EEeCCcCHHHHHHHhcC------CCEEEECC----CcccceeEEecccc-----------------------c---ccch
Confidence 99999999999999974 23555654 46788877643100 0 0000
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHHHhccCCcEEEE
Q 001758 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKVIL 332 (1017)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~-~~~~v~~lHs~l~~~er~~i~~~f~~grkVIV 332 (1017)
.....+.+.+.+..+.... .|+||||+||+++|+.+++.|.... .++.+.++||+|+.++|..+++.+ ++++|||
T Consensus 260 ~~~~~~~i~~~I~~l~~~~---~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~-~~rkIVL 335 (1283)
T TIGR01967 260 DLDQLEAILDAVDELFAEG---PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH-SGRRIVL 335 (1283)
T ss_pred hhhHHHHHHHHHHHHHhhC---CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC-CCceEEE
Confidence 0112233444454444332 5899999999999999999998543 357899999999999999988765 3479999
Q ss_pred EcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhccccccCCc
Q 001758 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECP 412 (1017)
Q Consensus 333 ATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~~l~~~~~P 412 (1017)
||||||+|||||+|+||||+|++|.++||+.++++.+.+.|||+++|.||+|||||.++|+||+||++++|+.+++++.|
T Consensus 336 ATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~P 415 (1283)
T TIGR01967 336 ATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDP 415 (1283)
T ss_pred eccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCC-ccccccchhhhcccCCCh
Q 001758 413 AILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRG-RYEPTFYGRLLASFSLSF 491 (1017)
Q Consensus 413 EI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g-~~~lT~lG~~la~lPldp 491 (1017)
||+|++|++++|+|+.++ ++++..| +|++||+.++|.+|++.|.++||||.+ | ..+||++|+.|++||+||
T Consensus 416 EIlR~~L~~viL~l~~lg---~~di~~f--~fldpP~~~~i~~A~~~L~~LGAld~~---~~~~~LT~lGr~ma~LPldP 487 (1283)
T TIGR01967 416 EILRTNLASVILQMLALR---LGDIAAF--PFIEAPDPRAIRDGFRLLEELGALDDD---EAEPQLTPIGRQLAQLPVDP 487 (1283)
T ss_pred ccccccHHHHHHHHHhcC---CCCcccc--cCCCCCCHHHHHHHHHHHHHCCCCCCC---CCCccccHHHHHHhhcCCCh
Confidence 999999999999998654 4555555 899999999999999999999999874 3 236999999999999999
Q ss_pred HHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHHHHHhhCcccCCCCccccccccchhhHHHHHHHHHHHHHH
Q 001758 492 DASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHV 571 (1017)
Q Consensus 492 ~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~f~~~~~D~~~~~~~~~~~~l~~l~af~~w~~~ 571 (1017)
++|+||+.+..+||+.|+++|||+||+++ ||.+|.++++++++++.+|.+++|| |++.+|+|+.|.+.
T Consensus 488 rlarmLl~a~~~gcl~e~l~IaA~Ls~~d-p~~~p~~~~~~a~~~~~~f~~~~sD-----------~l~~L~~~~~~~~~ 555 (1283)
T TIGR01967 488 RLARMLLEAHRLGCLQEVLIIASALSIQD-PRERPMEKQQAADQAHARFKDPRSD-----------FLSRVNLWRHIEEQ 555 (1283)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHcCCC-cCCCcchhHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHHh
Confidence 99999999999999999999999999886 8999999999899999999887776 88888999999763
Q ss_pred HHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCcCCCcchhh
Q 001758 572 FKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEH 651 (1017)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~~~~~~~~~h 651 (1017)
.... ..+..++||++||||+.+|++|.+++.||.++++++++...+. +. +++.+|
T Consensus 556 ~~~~------------------~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~----~~---~~~~i~ 610 (1283)
T TIGR01967 556 RQAL------------------SANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEE----PA---DYDAIH 610 (1283)
T ss_pred hhhc------------------cchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC----Cc---cHHHHH
Confidence 2210 1245689999999999999999999999999999887643221 11 111122
Q ss_pred hh---------------------------------cccCCCCCCCccccccccCCCCccccceecc
Q 001758 652 TC---------------------------------LLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 684 (1017)
Q Consensus 652 ~~---------------------------------~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 684 (1017)
+| +....++|++|++++.|+ +.|+|.|++
T Consensus 611 ~~l~~g~~~~iA~~~~~~~y~~~~g~~~~ihP~S~L~~~~p~wvv~~elv~t~----~~~ir~~a~ 672 (1283)
T TIGR01967 611 KALLSGLLSQIGMKDEKHEYDGARGRKFHIFPGSPLFKKPPKWVMAAELVETS----KLYARLVAK 672 (1283)
T ss_pred HHHHHhhHHHHheeCCCCcEEecCCcEEEECCCccccCCCCCEEEEeeecccc----hheEeeecc
Confidence 22 222347899999999887 789999888
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-89 Score=775.49 Aligned_cols=570 Identities=27% Similarity=0.381 Sum_probs=453.0
Q ss_pred ccCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC--------cEEEeccHHHHHHHHHHHHHhh
Q 001758 20 SPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME--------PILCTQPRRFAVVAVAKMVAKG 91 (1017)
Q Consensus 20 ~~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~--------~IivtqPrrlaa~s~a~rva~e 91 (1017)
+..|..|||....++|+++|..|.+|||||+||||||||+||||+|+|.. .|.+|||||+||+++|+||+.|
T Consensus 249 Q~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~E 328 (1172)
T KOG0926|consen 249 QESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFE 328 (1172)
T ss_pred HHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999863 7999999999999999999999
Q ss_pred cCCccCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC----
Q 001758 92 RNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK---- 167 (1017)
Q Consensus 92 ~~~~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~---- 167 (1017)
++. +|..|||+|||+....++|.|.|||+|+|+++|.++.+ +..|++|||||||||++++|+|.++|.++...|
T Consensus 329 L~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 329 LGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred hcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 997 99999999999999999999999999999999998743 669999999999999999999999998887654
Q ss_pred ------CCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCcccccccccc
Q 001758 168 ------NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYC 241 (1017)
Q Consensus 168 ------~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~ 241 (1017)
..+|+|+||||+-.+.|.+.-.-. ..+.+++.++. ++|||.++|-..
T Consensus 407 ke~~~~kpLKLIIMSATLRVsDFtenk~LF--pi~pPlikVdA----RQfPVsIHF~kr--------------------- 459 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVSDFTENKRLF--PIPPPLIKVDA----RQFPVSIHFNKR--------------------- 459 (1172)
T ss_pred hhhcccCceeEEEEeeeEEecccccCceec--CCCCceeeeec----ccCceEEEeccC---------------------
Confidence 368999999998666555321111 12234555554 789998876221
Q ss_pred CCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCC----------------------
Q 001758 242 SGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL---------------------- 299 (1017)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~---------------------- 299 (1017)
...+|. .-..+-...||...+ .|.||||+.|.++++.+++.|++.
T Consensus 460 --T~~DYi---------~eAfrKtc~IH~kLP--~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~ 526 (1172)
T KOG0926|consen 460 --TPDDYI---------AEAFRKTCKIHKKLP--PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKE 526 (1172)
T ss_pred --CCchHH---------HHHHHHHHHHhhcCC--CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhcccccc
Confidence 111221 112244567898888 689999999999999999887510
Q ss_pred ---------------------------------------------------------------------------CCCcE
Q 001758 300 ---------------------------------------------------------------------------SSFFK 304 (1017)
Q Consensus 300 ---------------------------------------------------------------------------~~~~~ 304 (1017)
...+.
T Consensus 527 ~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLy 606 (1172)
T KOG0926|consen 527 NPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLY 606 (1172)
T ss_pred chhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceE
Confidence 00245
Q ss_pred EEEecCCCCHHHHHHHHHhccCC-cEEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhc
Q 001758 305 VHILHSSVDTEQALMAMKICKSH-RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (1017)
Q Consensus 305 v~~lHs~l~~~er~~i~~~f~~g-rkVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~ 383 (1017)
|+|||+-|+.+.|.+++.....| |-+|||||+||||+|||+|+||||||+.|.+.||..++++++.+.|||||++.||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 89999999999999888766555 59999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEechhhhc-cccccCCchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHH
Q 001758 384 GRTGRTCDGQVYRLVTKSFFG-TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDH 462 (1017)
Q Consensus 384 GRAGR~~~G~c~rLys~~~~~-~l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~ 462 (1017)
|||||++||+|||||+...|+ .++++..|||++.+.++++|+|++ ++.+.+..|+|+.||+..++..|...|..
T Consensus 687 GRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKs-----MnI~kVvnFPFPtpPd~~~L~~Aer~L~~ 761 (1172)
T KOG0926|consen 687 GRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKS-----MNIDKVVNFPFPTPPDRSALEKAERRLKA 761 (1172)
T ss_pred cccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHh-----cCccceecCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999997 899999999999999999999975 44555667799999999999999999999
Q ss_pred hhhcccCCCCCccccccchhhhcccCCChHHHHHHHHccccCchhhHHHHHHHhccCCCcccC-------C----CCchH
Q 001758 463 KRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILH-------P----FGDDA 531 (1017)
Q Consensus 463 lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~-------P----~~~~~ 531 (1017)
|||||.+ | .+|++|+.|+.|||.|+.+|||+.+.+.+|+--++.++++||+.. +++. | +..++
T Consensus 762 LgALd~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e-~~i~~~~ll~n~~~r~~~~eE 835 (1172)
T KOG0926|consen 762 LGALDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYE-VLIVAASLLPNPLIREFEPEE 835 (1172)
T ss_pred hcccccc---C--CcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccc-hhhhhhhcccccccccCCcch
Confidence 9999984 5 499999999999999999999999999999999999999999765 3321 1 11111
Q ss_pred --------------H-------HHHhhCcccCCCCccccccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhc
Q 001758 532 --------------L-------FAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVT 590 (1017)
Q Consensus 532 --------------~-------a~~~~~~f~~~~~D~~~~~~~~~~~~l~~l~af~~w~~~~~~~~~~~~~~~~~~~~~~ 590 (1017)
. ...++.+|...++| -+.+|..+.||..
T Consensus 836 ~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd--------~l~Ll~Av~a~ey----------------------- 884 (1172)
T KOG0926|consen 836 KDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSD--------ALVLLSAVSAAEY----------------------- 884 (1172)
T ss_pred hhccccccccccHHHHHHHHHHHHHHHhhhccCCcc--------HHHHHHHHHHHHh-----------------------
Confidence 0 11122333333333 2333333333321
Q ss_pred cccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCcccC---CC-CCC-------------------------
Q 001758 591 ASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGT---SN-GLP------------------------- 641 (1017)
Q Consensus 591 ~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~~---~~-~~~------------------------- 641 (1017)
.+....||..|||..++|.+++++|.||..++.+..++-+.. .. ..|
T Consensus 885 ----~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~ 960 (1172)
T KOG0926|consen 885 ----AENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVD 960 (1172)
T ss_pred ----hhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 123345999999999999999999999999986332221100 00 001
Q ss_pred ------CcCCCcchhhhh--cccCCCCCCCccccccccCCCCccccce
Q 001758 642 ------TYYDPYEFEHTC--LLNCDPPRDMDPLAADNEHLGPSFEAKK 681 (1017)
Q Consensus 642 ------~~~~~~~~~h~~--~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 681 (1017)
+....--|+|++ +...-|+|++|++++.+- ..++..
T Consensus 961 ~~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~----~~~~~~ 1004 (1172)
T KOG0926|consen 961 ATEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTN----RPYMHG 1004 (1172)
T ss_pred ccccchhhhcCceeeeehhhhhccCccceehhhhhhcC----Cccccc
Confidence 011222345544 566889999999999887 555544
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.2e-76 Score=726.65 Aligned_cols=440 Identities=28% Similarity=0.350 Sum_probs=387.4
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEe
Q 001758 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~--~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~ 103 (1017)
|||+++..+|++++.+|+++||+|+|||||||++|+++++... .+|+|++|||++|++++++++++++..+|..|||.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 8999999999999999999999999999999999999997643 48999999999999999999999999999999999
Q ss_pred eccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-cCCCceEEEEeeccChH
Q 001758 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADIT 182 (1017)
Q Consensus 104 v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-~~~~lklIlmSATld~~ 182 (1017)
+++++..+.+++|+|+|+|+|++++..+. .+.+|++|||||+|||++++|+++++++.+.. .++++|+|+||||++.+
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d~-~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDDP-ELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhCc-ccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99998888899999999999999988653 56799999999999999999999999887765 47899999999999999
Q ss_pred HHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHH
Q 001758 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIH 262 (1017)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 262 (1017)
.+.+||++ .+++.+++ +.|+++++|+.... .......+.
T Consensus 160 ~l~~~l~~------~~vI~~~g----r~~pVe~~y~~~~~-------------------------------~~~~~~~v~ 198 (819)
T TIGR01970 160 RLSSLLPD------APVVESEG----RSFPVEIRYLPLRG-------------------------------DQRLEDAVS 198 (819)
T ss_pred HHHHHcCC------CcEEEecC----cceeeeeEEeecch-------------------------------hhhHHHHHH
Confidence 99999864 23444443 46777777643100 000111122
Q ss_pred HHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCC-CCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCccccc
Q 001758 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESS 340 (1017)
Q Consensus 263 ~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetG 340 (1017)
..+..+.... .|+||||+||+++|+.+++.|... ..++.+.++||+|+.++|.++++.|++|+ ||||||||||+|
T Consensus 199 ~~l~~~l~~~---~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 199 RAVEHALASE---TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHhc---CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 2233333222 479999999999999999999752 24689999999999999999999999887 999999999999
Q ss_pred ccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhccccccCCchhhhccHH
Q 001758 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLR 420 (1017)
Q Consensus 341 IdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~~l~~~~~PEI~r~~L~ 420 (1017)
||||+|+||||+|++|.+.||+.++++.+.++||||++|.||+|||||.++|+||+||+++++..|.++..|||+|++|+
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~ 355 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLS 355 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccccchhhhcccCCChHHHHHHHHc
Q 001758 421 LQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKF 500 (1017)
Q Consensus 421 ~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~ 500 (1017)
+++|+++.++ +.++..| +|+|||+..++..|++.|..+||||.+ | +||++|+.|++||+||++|+||+.+
T Consensus 356 ~~~L~l~~~g---~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~ 425 (819)
T TIGR01970 356 GLALELAQWG---AKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSA 425 (819)
T ss_pred HHHHHHHHcC---CCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999998765 3445555 899999999999999999999999984 5 5999999999999999999999999
Q ss_pred cccCchhhHHHHHHHhccCC
Q 001758 501 GEIGMLREGILLGILMDTQP 520 (1017)
Q Consensus 501 ~~~gc~~e~l~Iaa~ls~~~ 520 (1017)
.++||..++++|||+|+..+
T Consensus 426 ~~~~~~~~~~~iaa~ls~~~ 445 (819)
T TIGR01970 426 HSTGLAALACDLAALLEERG 445 (819)
T ss_pred hhcCCHHHHHHHHHHHcCCC
Confidence 99999999999999999775
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.1e-74 Score=705.20 Aligned_cols=438 Identities=25% Similarity=0.322 Sum_probs=379.2
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~--~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
+|||+++..+|++++.+++++||+|+|||||||++|+++++... .+|+|++|||++|.+++++++++++..+|..|||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 59999999999999999999999999999999999999998653 4899999999999999999999999999999999
Q ss_pred eeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-cCCCceEEEEeeccCh
Q 001758 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADI 181 (1017)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-~~~~lklIlmSATld~ 181 (1017)
.+++++..+.+++|+|+|+|+|++++..+. .+.+|++|||||+|||++++|+++++++.++. .++++|+|+||||++.
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~-~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhCC-CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 999999888899999999999999988653 56799999999999999999999999887765 4789999999999999
Q ss_pred HHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHH
Q 001758 182 TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLI 261 (1017)
Q Consensus 182 ~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 261 (1017)
+.+.+||.+ ..++.+++ +.|+++.+|+... ..+ ...+.+
T Consensus 162 ~~l~~~~~~------~~~I~~~g----r~~pV~~~y~~~~-----------------------~~~--------~~~~~v 200 (812)
T PRK11664 162 DRLQQLLPD------APVIVSEG----RSFPVERRYQPLP-----------------------AHQ--------RFDEAV 200 (812)
T ss_pred HHHHHhcCC------CCEEEecC----ccccceEEeccCc-----------------------hhh--------hHHHHH
Confidence 999999864 23344443 3567777664310 000 011112
Q ss_pred HHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC-CCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccc
Q 001758 262 HDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAES 339 (1017)
Q Consensus 262 ~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaet 339 (1017)
...+..+.... .|+||||+||+++|+.+++.|.. ...++.+.++||+|+.++|.++++.|++|+ ||||||||||+
T Consensus 201 ~~~l~~~l~~~---~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAEr 277 (812)
T PRK11664 201 ARATAELLRQE---SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAET 277 (812)
T ss_pred HHHHHHHHHhC---CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHh
Confidence 22233332222 47999999999999999999985 234688999999999999999999998887 99999999999
Q ss_pred cccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhccccccCCchhhhccH
Q 001758 340 SVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSL 419 (1017)
Q Consensus 340 GIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~~l~~~~~PEI~r~~L 419 (1017)
|||||+|++|||+|++|...||+..+++.+.+.||||++|.||+|||||.++|+||+||++++++.++++..|||+|++|
T Consensus 278 sLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL 357 (812)
T PRK11664 278 SLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDL 357 (812)
T ss_pred cccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccccchhhhcccCCChHHHHHHHH
Q 001758 420 RLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLK 499 (1017)
Q Consensus 420 ~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~ 499 (1017)
++++|.++.++ +.++..| +|+|||+..++..|++.|..+||||++ | +||++|+.|++||+||++|+||+.
T Consensus 358 ~~~~L~l~~~g---~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~---g--~lT~~G~~m~~lp~~Prla~~ll~ 427 (812)
T PRK11664 358 SGLLLELLQWG---CHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQ---G--RLTARGRKMAALGNDPRLAAMLVA 427 (812)
T ss_pred HHHHHHHHHcC---CCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCchHHHHHHHH
Confidence 99999998765 3445555 999999999999999999999999984 6 599999999999999999999999
Q ss_pred ccccCchh--hHHHHHHHhc
Q 001758 500 FGEIGMLR--EGILLGILMD 517 (1017)
Q Consensus 500 ~~~~gc~~--e~l~Iaa~ls 517 (1017)
+.++||.. .+..+||+++
T Consensus 428 a~~~~~~~l~~a~~laall~ 447 (812)
T PRK11664 428 AKEDDEAALATAAKLAAILE 447 (812)
T ss_pred HHhcCchhhHHHHHHHHhhc
Confidence 99998642 4556666665
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=2.1e-55 Score=506.92 Aligned_cols=557 Identities=28% Similarity=0.414 Sum_probs=447.5
Q ss_pred ccCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC-------CcEEEeccHHHHHHHHHHHHHhhc
Q 001758 20 SPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-------EPILCTQPRRFAVVAVAKMVAKGR 92 (1017)
Q Consensus 20 ~~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~-------~~IivtqPrrlaa~s~a~rva~e~ 92 (1017)
..+|.+||+..++.+|++++.+|++++|-++||+|||||+.++|||.-. ..++++||||+.|+++++++++++
T Consensus 371 ~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er 450 (1282)
T KOG0921|consen 371 TAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANER 450 (1282)
T ss_pred hhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhh
Confidence 3457789999999999999999999999999999999999999998743 378999999999999999999999
Q ss_pred CCccCCeeeEeeccccccC-CCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCce
Q 001758 93 NCELGGEVGYHIGHSKHLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1017)
Q Consensus 93 ~~~lg~~VGy~v~~~~~~~-~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lk 171 (1017)
++.+|..|||++|++..++ +...|.+||.|.+++.+.... ..++|+|+||.|||.+++||++.+++.+....++++
T Consensus 451 ~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 451 GEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred HHhhcccccccccccccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhh
Confidence 9999999999999998774 567899999999999988653 389999999999999999999999999999999999
Q ss_pred EEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCcccc------------cc--
Q 001758 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSEL------------SS-- 237 (1017)
Q Consensus 172 lIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~------------~~-- 237 (1017)
+++||||+|.+.|..||..+ +...++ ++.|++..+|++++...+....+..... .+
T Consensus 528 v~lmsatIdTd~f~~~f~~~------p~~~~~----grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK 597 (1282)
T KOG0921|consen 528 VVLMSATIDTDLFTNFFSSI------PDVTVH----GRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDK 597 (1282)
T ss_pred hhhhhcccchhhhhhhhccc------cceeec----cccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhc
Confidence 99999999999999999863 333444 3688999999988765443221111000 00
Q ss_pred ---------ccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC-----CCCCc
Q 001758 238 ---------LRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-----LSSFF 303 (1017)
Q Consensus 238 ---------~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-----~~~~~ 303 (1017)
..|+.....++...........++..++.+|....- .|.||||+|++..+..+...|.. ....+
T Consensus 598 ~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i--~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y 675 (1282)
T KOG0921|consen 598 GRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNI--DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY 675 (1282)
T ss_pred ccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCC--ccceeeecCchHHhhhhhhhhhhhhhhccchhc
Confidence 000000000000011111235566666666654433 58999999999999998887753 23457
Q ss_pred EEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHh
Q 001758 304 KVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 382 (1017)
Q Consensus 304 ~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR 382 (1017)
.++++|+.++..++.++++..+.+. |+|++||++|++|||.++++|||.+..+++.|-....+..+..+|.|+-+..||
T Consensus 676 ~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr 755 (1282)
T KOG0921|consen 676 EILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQR 755 (1282)
T ss_pred ccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhh
Confidence 8999999999988888888777665 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcEEEEechhhhccccccCCchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHH
Q 001758 383 RGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDH 462 (1017)
Q Consensus 383 ~GRAGR~~~G~c~rLys~~~~~~l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~ 462 (1017)
.||+||.++|.|+++.+...|+.+.++..||+.|.+|.++.|.+|. ..++.+..|+...+.||+.++|..+-..|.+
T Consensus 756 ~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikl---l~l~SI~~fl~kal~~~p~dav~e~e~~l~~ 832 (1282)
T KOG0921|consen 756 KGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKL---LRLGSIGEFLGKALQPPPYDAVIEAEAVLRE 832 (1282)
T ss_pred cccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHH---HHhhhHHHHHhhccCCCchhhccCchHHHHH
Confidence 9999999999999999999999999999999999999999998874 4567788899999999999999999999999
Q ss_pred hhhcccCCCCCccccccchhhhcccCCChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHHH-HHhhCccc
Q 001758 463 KRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALF-AEYTGCYF 541 (1017)
Q Consensus 463 lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a-~~~~~~f~ 541 (1017)
++++|.+ .++|++|+.++++|+.|.++++++...-+||..-++..|+.++... ++. |.+...-. .-.+..|
T Consensus 833 m~~ld~n-----~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~-~~~-~~~~~~~rl~g~q~~~- 904 (1282)
T KOG0921|consen 833 MGALDAN-----DELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPT-PFV-PREKHHSRLSGTQRKF- 904 (1282)
T ss_pred hhhhhcc-----CcccchhhhhhhccCcccccceeeechhhccchhhhhhhccccccc-ccc-cccccccccccchhhc-
Confidence 9999984 2699999999999999999999999989999998888888776432 333 22111100 0011122
Q ss_pred CCCCccccccccchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHH
Q 001758 542 GGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYED 621 (1017)
Q Consensus 542 ~~~~D~~~~~~~~~~~~l~~l~af~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~Q 621 (1017)
+|.+-+|+.+...+-+.|+...... .-.+++||....|+-+.|+...+.+.|
T Consensus 905 ---------~g~kfsdhva~~~v~q~~r~~~q~g-------------------a~~e~efc~r~~l~~~~~~~t~~a~~q 956 (1282)
T KOG0921|consen 905 ---------AGNKFSDHVAIVSVIQGYREAVQMG-------------------AAAEREFCERYSLSNPVLKMTDGARRQ 956 (1282)
T ss_pred ---------cccccccchhhhhhhhhhHHHhhhh-------------------hhhhhhHhHhhhhcchhhhhhhhhHHH
Confidence 2233344555555556665533221 234689999999999999999999999
Q ss_pred HHHHHHHhC
Q 001758 622 ILNAVHRFR 630 (1017)
Q Consensus 622 L~~~l~~~~ 630 (1017)
|+..|+...
T Consensus 957 l~d~L~q~~ 965 (1282)
T KOG0921|consen 957 LIDVLRQCS 965 (1282)
T ss_pred HHHHHHhcc
Confidence 999998543
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.4e-53 Score=508.71 Aligned_cols=394 Identities=21% Similarity=0.266 Sum_probs=290.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc-----------------CCCcEEEeccHHHHHHHHHHHHHhhc
Q 001758 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----------------NMEPILCTQPRRFAVVAVAKMVAKGR 92 (1017)
Q Consensus 30 ~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~-----------------~~~~IivtqPrrlaa~s~a~rva~e~ 92 (1017)
..|+++++.+.+++++|++|+||||||+|+||++++. ....|+|++|||.+|.+++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999998763 11379999999999999999988766
Q ss_pred CCccCCeeeEeecccccc-------CCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh
Q 001758 93 NCELGGEVGYHIGHSKHL-------SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL 165 (1017)
Q Consensus 93 ~~~lg~~VGy~v~~~~~~-------~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~ 165 (1017)
|......+.+.+++.... ....+|+++|++..+. .+.++++|||||||||+..+|+++++++.+..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~-------~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~ 319 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLN-------KLFDYGTVIIDEVHEHDQIGDIIIAVARKHID 319 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccccc-------ccccCCEEEccccccCccchhHHHHHHHHhhh
Confidence 542111122233332221 2246799999774221 24489999999999999999999999987664
Q ss_pred cCCCceEEEEeeccC--hHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCC
Q 001758 166 KKNDLRVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (1017)
Q Consensus 166 ~~~~lklIlmSATld--~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (1017)
.. .|+++||||++ .+.+.+||++ ..++.+++. ..++++..|++..... .
T Consensus 320 ~~--rq~ILmSATl~~dv~~l~~~~~~------p~~I~I~gr---t~~pV~~~yi~~~~~~------------------~ 370 (675)
T PHA02653 320 KI--RSLFLMTATLEDDRDRIKEFFPN------PAFVHIPGG---TLFPISEVYVKNKYNP------------------K 370 (675)
T ss_pred hc--CEEEEEccCCcHhHHHHHHHhcC------CcEEEeCCC---cCCCeEEEEeecCccc------------------c
Confidence 33 38999999994 5678888864 234445532 2477777775432100 0
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHh
Q 001758 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (1017)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~ 323 (1017)
...++. .... . .++..+....+..++++|||+||+++++.+++.|....+++.+.++||+|++.+ ++++.
T Consensus 371 ~~~~y~----~~~k-~---~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~e--q~l~~ 440 (675)
T PHA02653 371 NKRAYI----EEEK-K---NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNID--EILEK 440 (675)
T ss_pred cchhhh----HHHH-H---HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHH--HHHHH
Confidence 000000 0011 1 111111111111247999999999999999999986544689999999999753 34455
Q ss_pred c-cCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechh
Q 001758 324 C-KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (1017)
Q Consensus 324 f-~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~ 401 (1017)
| +.++ +||||||+||+|||||+|++|||+|+++.+. +..+. ..|+|+++|.||+|||||.++|.||+||+++
T Consensus 441 ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~ 514 (675)
T PHA02653 441 VYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLD 514 (675)
T ss_pred HhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHH
Confidence 5 5666 9999999999999999999999999877542 22222 4699999999999999999999999999998
Q ss_pred hhccccccCCchhhhcc---HHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccc
Q 001758 402 FFGTLEDHECPAILRLS---LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPT 478 (1017)
Q Consensus 402 ~~~~l~~~~~PEI~r~~---L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT 478 (1017)
++ .| |.|.+ |..++|+++.|+. +.+. + .|+|||+.+++..|++.|..+||+|+ +||
T Consensus 515 ~~-------~p-I~ri~~~~L~~~vL~lk~~g~---~~~~-~--~~ldpP~~~~l~~A~~~L~~lga~~~-------~l~ 573 (675)
T PHA02653 515 LL-------KP-IKRIDSEFLHNYILYAKYFNL---TLPE-D--LFVIPSNLDRLRKTEEYIDSFNISIE-------KWY 573 (675)
T ss_pred Hh-------HH-HHHHhHHHHHHHHHHHHHcCC---CCcc-c--ccCCCCCHHHHHHHHHHHHHcCCCch-------hhh
Confidence 74 24 66766 8899999987763 3333 2 38999999999999999999998865 499
Q ss_pred cc--hhhhcccCCChHHHHHHHHc
Q 001758 479 FY--GRLLASFSLSFDASVLVLKF 500 (1017)
Q Consensus 479 ~l--G~~la~lPldp~~~~~ll~~ 500 (1017)
.+ |+.|+-+ +.||+++.+
T Consensus 574 ~l~~~~~~~~~----~~~k~~~~g 593 (675)
T PHA02653 574 EILSNYYVNML----EYAKIYVKG 593 (675)
T ss_pred hhhccccHHHH----HHhHHHhcc
Confidence 99 9999988 899988765
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.9e-38 Score=387.84 Aligned_cols=419 Identities=14% Similarity=0.168 Sum_probs=276.9
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~--~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
...++++|.++++.+.++++++++||||||||+++...+++.. ..+++++.|++.+|.+.++.+.... .+|..|+.
T Consensus 20 ~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v~~ 97 (674)
T PRK01172 20 DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR--SLGMRVKI 97 (674)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh--hcCCeEEE
Confidence 3557999999999999999999999999999988777766532 2467777799999999988887532 34555665
Q ss_pred eeccccc---cCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccc--cccHHHHHHHHHHhcCCCceEEEEee
Q 001758 103 HIGHSKH---LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSV--ESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1017)
Q Consensus 103 ~v~~~~~---~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~--~~d~ll~~lk~ll~~~~~lklIlmSA 177 (1017)
.++..+. .....+|+|+|||.+...+......+.++++|||||||+..- ....+..++..+...+++.|+|+|||
T Consensus 98 ~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSA 177 (674)
T PRK01172 98 SIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSA 177 (674)
T ss_pred EeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeC
Confidence 5443221 124679999999999888776544456999999999995431 11234445555555678899999999
Q ss_pred cc-ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeE--eehHHHHHHHhccCCCCccccccccccCCCCCCccccccc
Q 001758 178 TA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRR--VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1017)
Q Consensus 178 Tl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~--v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1017)
|+ +.+.+++|++.. .+.... +..+.+ +.|.... +..... . ..
T Consensus 178 Tl~n~~~la~wl~~~-------~~~~~~----r~vpl~~~i~~~~~~------------------~~~~~~----~--~~ 222 (674)
T PRK01172 178 TVSNANELAQWLNAS-------LIKSNF----RPVPLKLGILYRKRL------------------ILDGYE----R--SQ 222 (674)
T ss_pred ccCCHHHHHHHhCCC-------ccCCCC----CCCCeEEEEEecCee------------------eecccc----c--cc
Confidence 98 788999998631 111111 111111 1110000 000000 0 00
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCC-----------------------CcEEEEecCC
Q 001758 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-----------------------FFKVHILHSS 311 (1017)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~-----------------------~~~v~~lHs~ 311 (1017)
.... .++..... .++++||||+++++++.++..|..... ...|.++||+
T Consensus 223 ~~~~----~~i~~~~~----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag 294 (674)
T PRK01172 223 VDIN----SLIKETVN----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG 294 (674)
T ss_pred ccHH----HHHHHHHh----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCC
Confidence 0111 22222221 157999999999999999887753211 1248889999
Q ss_pred CCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC
Q 001758 312 VDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC 390 (1017)
Q Consensus 312 l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~ 390 (1017)
|+.++|..+++.|++|. +|||||+++++|||+|+..+||+ +. .+|+. ....++|.+++.||+|||||.+
T Consensus 295 l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGN------GGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc---eEeCC------CCceeCCHHHHHHHhhcCCCCC
Confidence 99999999999999988 99999999999999999988885 11 12322 2235789999999999999985
Q ss_pred ---CCcEEEEec-hhhhc---c-ccccCC--------chhhhccHHHHHHHHHhhccccCCChHHhh-hhcc--CCCC--
Q 001758 391 ---DGQVYRLVT-KSFFG---T-LEDHEC--------PAILRLSLRLQVLLICCAESKAISDPKVLL-QKAL--DPPY-- 449 (1017)
Q Consensus 391 ---~G~c~rLys-~~~~~---~-l~~~~~--------PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l-~~~l--dpP~-- 449 (1017)
.|.++.+.. +++++ . +..... +++.+.++-..+.... ..+..+...|+ ..|+ ++++
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~---~~~~~d~~~~l~~tf~~~~~~~~~ 441 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGL---ASSMEDLILFYNETLMAIQNGVDE 441 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcc---cCCHHHHHHHHHhhhhHhcCchHH
Confidence 677776644 33232 2 211211 2333333222222110 11222333332 1222 3322
Q ss_pred -CchHHHHHHHHHHhhhcccCCCCCccccccchhhhcccCCChHHHHHHHHccccC
Q 001758 450 -PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIG 504 (1017)
Q Consensus 450 -~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~~~~g 504 (1017)
.+.|..+++.|.+.|+|+.+ +.+.+|++|+.++.+|++|..++.+..+....
T Consensus 442 l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~ 494 (674)
T PRK01172 442 IDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHD 494 (674)
T ss_pred HHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhcc
Confidence 46789999999999999863 44679999999999999999999988776543
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-35 Score=370.18 Aligned_cols=425 Identities=19% Similarity=0.180 Sum_probs=276.8
Q ss_pred CchHHHHHHHHH-HHcCCcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEe
Q 001758 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1017)
Q Consensus 27 Pi~~~Q~eil~a-i~~~~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~ 103 (1017)
-+++.|.++++. +.+++++++++|||||||..+...++.. ..++++++.|++.+|.+..+.+.. ++ ..|..|+..
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~-~~-~~g~~v~~~ 100 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFER-FE-ELGVRVGIS 100 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHH-hh-cCCCEEEEE
Confidence 378999999998 7889999999999999997776665543 235788899999999999988875 32 224344433
Q ss_pred eccc---cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEecccccccccc---HHHHHHHHHHhcCCCceEEEEee
Q 001758 104 IGHS---KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESD---LVLVCVKQLLLKKNDLRVVLMSA 177 (1017)
Q Consensus 104 v~~~---~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d---~ll~~lk~ll~~~~~lklIlmSA 177 (1017)
.+.. .......+|+|+||+.+...+......+.++++|||||+|. ..+.+ .+..++.++....++.|+|+|||
T Consensus 101 tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~-l~d~~rg~~le~il~rl~~~~~~~qii~lSA 179 (737)
T PRK02362 101 TGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL-IDSANRGPTLEVTLAKLRRLNPDLQVVALSA 179 (737)
T ss_pred eCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc-cCCCcchHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 2221 11224679999999999888876444456899999999994 32322 23344555555678899999999
Q ss_pred cc-ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchh
Q 001758 178 TA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (1017)
Q Consensus 178 Tl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1017)
|+ +++.+.+|++... +.....|.. ....+.+-... . +.. .... ........
T Consensus 180 Tl~n~~~la~wl~~~~----~~~~~rpv~-----l~~~v~~~~~~----~-------------~~~-~~~~-~~~~~~~~ 231 (737)
T PRK02362 180 TIGNADELADWLDAEL----VDSEWRPID-----LREGVFYGGAI----H-------------FDD-SQRE-VEVPSKDD 231 (737)
T ss_pred cCCCHHHHHHHhCCCc----ccCCCCCCC-----CeeeEecCCee----c-------------ccc-cccc-CCCccchH
Confidence 98 7889999986310 000001110 00011110000 0 000 0000 00000011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCC----------------------------------C
Q 001758 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS----------------------------------F 302 (1017)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~----------------------------------~ 302 (1017)
... .+..... .++++||||+++++++.++..|..... .
T Consensus 232 ~~~----~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 232 TLN----LVLDTLE----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred HHH----HHHHHHH----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 122 2222221 147999999999999988777653210 1
Q ss_pred cEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHH
Q 001758 303 FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 381 (1017)
Q Consensus 303 ~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~Q 381 (1017)
..|.++||+|+.++|..+++.|+.|. +|||||+++++|||+|++++||+. ..+||...+ ..|+|.++|.|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g-----~~~~s~~~y~Q 374 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAG-----MQPIPVLEYHQ 374 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCC-----ceeCCHHHHHH
Confidence 36899999999999999999999998 999999999999999999999962 334775432 25789999999
Q ss_pred hcCCCCCCC---CCcEEEEechhh-----hccccccCCchhhhcc------HHHHHHHHHhhc-cccCCChHHhh-hhcc
Q 001758 382 RRGRTGRTC---DGQVYRLVTKSF-----FGTLEDHECPAILRLS------LRLQVLLICCAE-SKAISDPKVLL-QKAL 445 (1017)
Q Consensus 382 R~GRAGR~~---~G~c~rLys~~~-----~~~l~~~~~PEI~r~~------L~~~vL~l~~~~-~~~l~~~~~~l-~~~l 445 (1017)
|+|||||.+ .|.|+.+....+ |+.+-. ..|+-..+. |...++...+.+ .....+...|+ ..|+
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~-~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~ 453 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW-ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFY 453 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh-CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChH
Confidence 999999984 499999986531 222211 123322222 334444432222 11122222232 1333
Q ss_pred CCCC------CchHHHHHHHHHHhhhcccCCCCCccccccchhhhcccCCChHHHHHHHHccc
Q 001758 446 DPPY------PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502 (1017)
Q Consensus 446 dpP~------~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~~~ 502 (1017)
..+. .+.+..+++.|.+.|+|+.++ +.+.+|++|+.++.++++|..+..+..+..
T Consensus 454 ~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~--~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 454 ATQTDDTGRLERVVDDVLDFLERNGMIEEDG--ETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred HhhccchHHHHHHHHHHHHHHHHCCCeeecC--CeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 3332 235899999999999998732 447799999999999999999998877654
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.6e-34 Score=355.82 Aligned_cols=433 Identities=16% Similarity=0.097 Sum_probs=269.1
Q ss_pred CchHHHHHHHHH-HHcCCcEEEEcCCCCcHhHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 27 Pi~~~Q~eil~a-i~~~~~vII~apTGSGKTtqip~~lle~---~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
-++++|.++++. +.+++++++++|||||||..+...++.. ...+++++.|.+.++.+..+++... . .+|..|+.
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~-~-~~g~~v~~ 100 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW-E-KLGLRVAM 100 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH-h-hcCCEEEE
Confidence 368999999986 7899999999999999997665555432 2357888889999999998887652 1 23444543
Q ss_pred eeccc---cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeecc
Q 001758 103 HIGHS---KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1017)
Q Consensus 103 ~v~~~---~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATl 179 (1017)
..+.. .....+++|+|+||+++...+......+.++++|||||+|. ..+.+....+-..+.....+.|+|+||||+
T Consensus 101 ~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~~rg~~le~il~~l~~~~qiI~lSATl 179 (720)
T PRK00254 101 TTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSYDRGATLEMILTHMLGRAQILGLSATV 179 (720)
T ss_pred EeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCccchHHHHHHHHhcCcCCcEEEEEccC
Confidence 33221 11234689999999999888775544456999999999994 222222222222222334578999999998
Q ss_pred -ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHH
Q 001758 180 -DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (1017)
Q Consensus 180 -d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1017)
+++.+.+|++... +.....|.... ..+.+ .. . .+... .. . ........
T Consensus 180 ~n~~~la~wl~~~~----~~~~~rpv~l~-----~~~~~-~~-------------~----~~~~~--~~-~-~~~~~~~~ 228 (720)
T PRK00254 180 GNAEELAEWLNAEL----VVSDWRPVKLR-----KGVFY-QG-------------F----LFWED--GK-I-ERFPNSWE 228 (720)
T ss_pred CCHHHHHHHhCCcc----ccCCCCCCcce-----eeEec-CC-------------e----eeccC--cc-h-hcchHHHH
Confidence 7899999986310 00000110000 00000 00 0 00000 00 0 00001111
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCC-----------------------C--------CCcEEEE
Q 001758 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-----------------------S--------SFFKVHI 307 (1017)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-----------------------~--------~~~~v~~ 307 (1017)
..+...... ++++||||++++.++.++..|... . -...|.+
T Consensus 229 ----~~~~~~i~~----~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 300 (720)
T PRK00254 229 ----SLVYDAVKK----GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAF 300 (720)
T ss_pred ----HHHHHHHHh----CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEE
Confidence 222222221 468999999999988766555210 0 0135899
Q ss_pred ecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCC
Q 001758 308 LHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRT 386 (1017)
Q Consensus 308 lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRA 386 (1017)
+||+|++++|..+++.|+.|. +|||||+++++|||+|++++||... .+|+ . +...+++.+++.||+|||
T Consensus 301 hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~-----~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 301 HHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-N-----FGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred eCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-C-----CCceeCCHHHHHHhhhcc
Confidence 999999999999999999998 9999999999999999999999632 2343 1 122345778999999999
Q ss_pred CCC---CCCcEEEEechhh----hccccccCCchhhh------ccHHHHHHHHHhhccccCCChH---Hhh---hhccCC
Q 001758 387 GRT---CDGQVYRLVTKSF----FGTLEDHECPAILR------LSLRLQVLLICCAESKAISDPK---VLL---QKALDP 447 (1017)
Q Consensus 387 GR~---~~G~c~rLys~~~----~~~l~~~~~PEI~r------~~L~~~vL~l~~~~~~~l~~~~---~~l---~~~ldp 447 (1017)
||. ..|.++.+.+.++ ++.+. ...||-+. +.|...++..... ..+.... .++ +-+...
T Consensus 371 GR~~~d~~G~~ii~~~~~~~~~~~~~~~-~~~pe~l~s~l~~es~l~~~ll~~i~~--~~~~~~~~~~~~l~~Tf~~~~~ 447 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEEPSKLMERYI-FGKPEKLFSMLSNESAFRSQVLALITN--FGVSNFKELVNFLERTFYAHQR 447 (720)
T ss_pred CCCCcCCCceEEEEecCcchHHHHHHHH-hCCchhhhccCCchHHHHHHHHHHHHh--CCCCCHHHHHHHHHhCHHHHhh
Confidence 997 4699998886533 22221 11222211 1222333333211 1222222 221 112222
Q ss_pred CCC----chHHHHHHHHHHhhhcccCCCCCccccccchhhhcccCCChHHHHHHHHccc----cCchhhHHHHHHH
Q 001758 448 PYP----EVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE----IGMLREGILLGIL 515 (1017)
Q Consensus 448 P~~----~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~~~----~gc~~e~l~Iaa~ 515 (1017)
|+. +.+..++..|.+.|.|+. +.++.+.+|++|++++.++++|..++.+..+.. ......++-+.+.
T Consensus 448 ~~~~~~~~~v~~~l~~L~~~~~i~~-~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~ 522 (720)
T PRK00254 448 KDLYSLEEKAKEIVYFLLENEFIDI-DLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAS 522 (720)
T ss_pred cChHhHHHHHHHHHHHHHHCCCeEE-cCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhC
Confidence 332 457788999999999976 333567899999999999999999998866543 2234445544443
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3e-34 Score=340.19 Aligned_cols=311 Identities=20% Similarity=0.229 Sum_probs=219.9
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccCCeee
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~-----~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
..+++|.++++.+.+++++|++||||||||+.+...+++... ..++++.|++.+|.|+++.+........+..+.
T Consensus 26 ~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~ 105 (460)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVL 105 (460)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 367999999999999999999999999999877776665421 256777788888899888765532111122222
Q ss_pred Eeecc------ccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 102 YHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 102 y~v~~------~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
...+. .......++|+|+|||.|++.+..+.+.+.++++||||||| +.++..|...+...+....++.+++++
T Consensus 106 ~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q~ll~ 184 (460)
T PRK11776 106 TLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQTLLF 184 (460)
T ss_pred EEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccEEEEE
Confidence 11111 11234678999999999999998777777799999999999 666777766655555555667899999
Q ss_pred eeccChH--HHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 001758 176 SATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (1017)
Q Consensus 176 SATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1017)
|||++.. .+...+. . .+..+......... . ++..| .. ..
T Consensus 185 SAT~~~~~~~l~~~~~--~--~~~~i~~~~~~~~~-~--i~~~~-----------------------~~--------~~- 225 (460)
T PRK11776 185 SATYPEGIAAISQRFQ--R--DPVEVKVESTHDLP-A--IEQRF-----------------------YE--------VS- 225 (460)
T ss_pred EecCcHHHHHHHHHhc--C--CCEEEEECcCCCCC-C--eeEEE-----------------------EE--------eC-
Confidence 9998643 3333321 1 12222111110000 0 00000 00 00
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEE
Q 001758 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (1017)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIV 332 (1017)
.....+.+..++ .... .+++||||+++++++.+++.|.. .++.+..+||+|++.+|..+++.|+.|. +|||
T Consensus 226 ~~~k~~~l~~ll----~~~~--~~~~lVF~~t~~~~~~l~~~L~~--~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLV 297 (460)
T PRK11776 226 PDERLPALQRLL----LHHQ--PESCVVFCNTKKECQEVADALNA--QGFSALALHGDLEQRDRDQVLVRFANRSCSVLV 297 (460)
T ss_pred cHHHHHHHHHHH----HhcC--CCceEEEECCHHHHHHHHHHHHh--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 001122222222 2222 46899999999999999999985 4578999999999999999999999998 9999
Q ss_pred EcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhh
Q 001758 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1017)
Q Consensus 333 ATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1017)
||+++++|||||++++||+ ||.+...+. |.||+|||||. ..|.||.|+++++.
T Consensus 298 aTdv~~rGiDi~~v~~VI~--------~d~p~~~~~----------yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 298 ATDVAARGLDIKALEAVIN--------YELARDPEV----------HVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred EecccccccchhcCCeEEE--------ecCCCCHhH----------hhhhcccccCCCCcceEEEEEchhHH
Confidence 9999999999999999999 888875544 59999999999 57999999998654
No 18
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=332.78 Aligned_cols=316 Identities=19% Similarity=0.256 Sum_probs=235.0
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHh--HHHHHHHHhcC---------CCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAEN---------MEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKT--tqip~~lle~~---------~~~IivtqPrrlaa~s~a~rva~e~~~~l 96 (1017)
.+++|.+.++.++.++++|..+.|||||| +++|.+..-.. ...++|+.|+|.+|.|+.+...+. +..+
T Consensus 114 PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~-~~~~ 192 (519)
T KOG0331|consen 114 PTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF-GKSL 192 (519)
T ss_pred CchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH-cCCC
Confidence 57889999999999999999999999999 55665543222 126899999999999988765543 3233
Q ss_pred C--CeeeEe---e-ccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc-CCC
Q 001758 97 G--GEVGYH---I-GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KND 169 (1017)
Q Consensus 97 g--~~VGy~---v-~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~-~~~ 169 (1017)
+ ..+=|. . .+...+....+|+++|||+|+.++..+.+.+.+++++|+|||+ |+++.+|-..+-+.+-.. +++
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~~ 271 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRPD 271 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCCc
Confidence 2 111111 0 1233445678999999999999999988888899999999999 999999999988888888 666
Q ss_pred ceEEEEeeccChH--HHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 001758 170 LRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1017)
Q Consensus 170 lklIlmSATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1017)
.|+++.|||.+.+ .+++-|-. + ++.+... +.++... .+.. ..
T Consensus 272 rQtlm~saTwp~~v~~lA~~fl~--~--~~~i~ig--------------~~~~~~a----~~~i--------------~q 315 (519)
T KOG0331|consen 272 RQTLMFSATWPKEVRQLAEDFLN--N--PIQINVG--------------NKKELKA----NHNI--------------RQ 315 (519)
T ss_pred ccEEEEeeeccHHHHHHHHHHhc--C--ceEEEec--------------chhhhhh----hcch--------------hh
Confidence 6899999998643 44443321 1 2222111 1110000 0000 00
Q ss_pred ccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC
Q 001758 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1017)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1017)
+...-........+..++..+. . +.++++||||.|+..++++...|+.. ++.+..+||+.++.||..+++.|++|
T Consensus 316 ive~~~~~~K~~~l~~lL~~~~-~--~~~~KvIIFc~tkr~~~~l~~~l~~~--~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 316 IVEVCDETAKLRKLGKLLEDIS-S--DSEGKVIIFCETKRTCDELARNLRRK--GWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred hhhhcCHHHHHHHHHHHHHHHh-c--cCCCcEEEEecchhhHHHHHHHHHhc--CcceeeecccccHHHHHHHHHhcccC
Confidence 0011112233444555555555 2 23689999999999999999999843 37899999999999999999999999
Q ss_pred c-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 328 r-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
+ .||||||+|++|||||+|++||+ ||+|.+++.| .||.||+||. +.|..|.+++...+.
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~vEdY----------VHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNVEDY----------VHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred CcceEEEcccccccCCCccccEEEe--------CCCCCCHHHH----------HhhcCccccCCCCceEEEEEeHHHHH
Confidence 9 99999999999999999999999 9999988877 9999999997 789999999987664
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.5e-34 Score=333.80 Aligned_cols=312 Identities=21% Similarity=0.267 Sum_probs=217.0
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc------------CCCcEEEeccHHHHHHHHHHHHHhhcCC
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE------------NMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~------------~~~~IivtqPrrlaa~s~a~rva~e~~~ 94 (1017)
..+++|.++++.+.+++++|++||||||||..+...+++. ....++++.|++.+|.|+.+.+... ..
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l-~~ 108 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPL-AQ 108 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHH-hc
Confidence 3578999999999999999999999999997665554421 1136889999999999987655432 22
Q ss_pred ccCCeeeEeeccc------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCC
Q 001758 95 ELGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (1017)
Q Consensus 95 ~lg~~VGy~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~ 168 (1017)
..|..++..++.. .......+|+|+|||.|++.+....+.+.++++||||||| +.++.++...+.. ++..-+
T Consensus 109 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~i~~-i~~~~~ 186 (423)
T PRK04837 109 ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKDIRW-LFRRMP 186 (423)
T ss_pred cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHHHHH-HHHhCC
Confidence 2333344333222 1224567999999999999998777777799999999999 5666666554433 333322
Q ss_pred ---CceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCC
Q 001758 169 ---DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (1017)
Q Consensus 169 ---~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (1017)
..+.+++|||++.....-.+..+... ..+...+.............|
T Consensus 187 ~~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~~~---------------------------- 236 (423)
T PRK04837 187 PANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEELFY---------------------------- 236 (423)
T ss_pred CccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEEEe----------------------------
Confidence 34578999999754333223222222 111111111000000000000
Q ss_pred CCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhcc
Q 001758 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (1017)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~ 325 (1017)
.........+..++ .... .+++||||+++..++.+++.|.. .++.+..+||+|+.++|..+++.|+
T Consensus 237 ------~~~~~k~~~l~~ll----~~~~--~~~~lVF~~t~~~~~~l~~~L~~--~g~~v~~lhg~~~~~~R~~~l~~F~ 302 (423)
T PRK04837 237 ------PSNEEKMRLLQTLI----EEEW--PDRAIIFANTKHRCEEIWGHLAA--DGHRVGLLTGDVAQKKRLRILEEFT 302 (423)
T ss_pred ------CCHHHHHHHHHHHH----HhcC--CCeEEEEECCHHHHHHHHHHHHh--CCCcEEEecCCCChhHHHHHHHHHH
Confidence 00011122222222 2222 46899999999999999999984 4578999999999999999999999
Q ss_pred CCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhh
Q 001758 326 SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1017)
Q Consensus 326 ~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1017)
.|. +|||||+++++|||+|+|++||+ ||.|.+...| .||+|||||. +.|.++.++++++.
T Consensus 303 ~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d~P~s~~~y----------iqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 303 RGDLDILVATDVAARGLHIPAVTHVFN--------YDLPDDCEDY----------VHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred cCCCcEEEEechhhcCCCccccCEEEE--------eCCCCchhhe----------EeccccccCCCCCeeEEEEeCHHHH
Confidence 998 99999999999999999999999 9998866655 9999999999 67999999998654
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4e-34 Score=343.68 Aligned_cols=316 Identities=20% Similarity=0.216 Sum_probs=221.0
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----C------CCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N------MEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----~------~~~IivtqPrrlaa~s~a~rva~e~~~~l 96 (1017)
..+++|.++++.+++++++|++||||||||+.+...++.. . ...++++.|+|.+|.|+.+.+.... ...
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~-~~~ 230 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG-ASS 230 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh-ccc
Confidence 3689999999999999999999999999996543333211 1 1257888899999999887765532 222
Q ss_pred CCeeeEeeccc------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCc
Q 001758 97 GGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1017)
Q Consensus 97 g~~VGy~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~l 170 (1017)
+..+....+.. .......+|+|+|||+|++.+......+.++++||||||| |.++.+|...+.+.+...+++.
T Consensus 231 ~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~ 309 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDR 309 (545)
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCC
Confidence 21111111111 1224568999999999999998776667799999999999 7888888777766666677899
Q ss_pred eEEEEeeccChHHHHHHHhhcCCCceeEEEEecCC-CcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 001758 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPST-NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1017)
Q Consensus 171 klIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~-~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1017)
+++++|||++.+ ...+...+....++.+..-... .........+.. .
T Consensus 310 q~l~~SAT~p~~-v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~-------------------------------~ 357 (545)
T PTZ00110 310 QTLMWSATWPKE-VQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFV-------------------------------V 357 (545)
T ss_pred eEEEEEeCCCHH-HHHHHHHHhccCCEEEEECCCccccCCCeeEEEEE-------------------------------E
Confidence 999999998643 2222222111112221110000 000000000000 0
Q ss_pred ccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-
Q 001758 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1017)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1017)
........+.+++..+.. ..+++||||++++.++.+++.|.. .++.+..+||++++++|..+++.|+.++
T Consensus 358 ---~~~~k~~~L~~ll~~~~~----~~~k~LIF~~t~~~a~~l~~~L~~--~g~~~~~ihg~~~~~eR~~il~~F~~G~~ 428 (545)
T PTZ00110 358 ---EEHEKRGKLKMLLQRIMR----DGDKILIFVETKKGADFLTKELRL--DGWPALCIHGDKKQEERTWVLNEFKTGKS 428 (545)
T ss_pred ---echhHHHHHHHHHHHhcc----cCCeEEEEecChHHHHHHHHHHHH--cCCcEEEEECCCcHHHHHHHHHHHhcCCC
Confidence 001112222333333322 246999999999999999999974 4578899999999999999999999998
Q ss_pred EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhh
Q 001758 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1017)
Q Consensus 329 kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1017)
+|||||+++++|||||+|++||+ ||.+... .+|.||+||+||. ..|.||.++++++.
T Consensus 429 ~ILVaTdv~~rGIDi~~v~~VI~--------~d~P~s~----------~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 429 PIMIATDVASRGLDVKDVKYVIN--------FDFPNQI----------EDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred cEEEEcchhhcCCCcccCCEEEE--------eCCCCCH----------HHHHHHhcccccCCCCceEEEEECcchH
Confidence 99999999999999999999999 9988754 4559999999999 68999999998654
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.5e-34 Score=334.08 Aligned_cols=317 Identities=23% Similarity=0.260 Sum_probs=225.6
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc---------CCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~---------~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
..+++|.++++++.++++++++||||||||..+...+++. +..+++++.|++.+|.|+++.+..... ..+
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~-~~~ 101 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK-HTH 101 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc-cCC
Confidence 4678999999999999999999999999997655444421 124789999999999998776554321 222
Q ss_pred CeeeEeec------cccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCce
Q 001758 98 GEVGYHIG------HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1017)
Q Consensus 98 ~~VGy~v~------~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lk 171 (1017)
..++...+ .......+.+|+|+|||+|++.+....+.+.++++||||||| +.++..+...+.......+...+
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~i~~~~~~~~q 180 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIETIAAETRWRKQ 180 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHHHHHhCccccE
Confidence 22332222 112234578999999999999998877777799999999999 66666666555544445566679
Q ss_pred EEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 001758 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1017)
Q Consensus 172 lIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1017)
++++|||++.+.+.++...+.. .++.+...+....... +...| ...
T Consensus 181 ~~~~SAT~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~--i~~~~-------------------------------~~~ 226 (434)
T PRK11192 181 TLLFSATLEGDAVQDFAERLLN-DPVEVEAEPSRRERKK--IHQWY-------------------------------YRA 226 (434)
T ss_pred EEEEEeecCHHHHHHHHHHHcc-CCEEEEecCCcccccC--ceEEE-------------------------------EEe
Confidence 9999999976656655544321 2222222221100000 00000 000
Q ss_pred ccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EE
Q 001758 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KV 330 (1017)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kV 330 (1017)
....... +++..+..... .+++||||+++++++.+++.|.. .++.+..+||+|+..+|..+++.|+.|. +|
T Consensus 227 ~~~~~k~----~~l~~l~~~~~--~~~~lVF~~s~~~~~~l~~~L~~--~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~v 298 (434)
T PRK11192 227 DDLEHKT----ALLCHLLKQPE--VTRSIVFVRTRERVHELAGWLRK--AGINCCYLEGEMVQAKRNEAIKRLTDGRVNV 298 (434)
T ss_pred CCHHHHH----HHHHHHHhcCC--CCeEEEEeCChHHHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHhCCCCcE
Confidence 0001112 23333333322 46899999999999999999984 4578999999999999999999999998 99
Q ss_pred EEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhcc
Q 001758 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (1017)
Q Consensus 331 IVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~~ 405 (1017)
||||+++++|||+|+|++||+ ||.+.. ...|.||+||+||. ..|.++.+++..++..
T Consensus 299 LVaTd~~~~GiDip~v~~VI~--------~d~p~s----------~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 299 LVATDVAARGIDIDDVSHVIN--------FDMPRS----------ADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred EEEccccccCccCCCCCEEEE--------ECCCCC----------HHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 999999999999999999999 888764 45569999999998 5799999998766643
No 22
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=312.39 Aligned_cols=311 Identities=22% Similarity=0.310 Sum_probs=227.7
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----CCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
.+++|.++++.++.|++||..|+||||||..+...+++. ... ..+|+.|+|.+|.|+++.. +.+|..+|-.|..
T Consensus 84 PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr~~~ 162 (476)
T KOG0330|consen 84 PTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGLRVAV 162 (476)
T ss_pred CchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCeEEEE
Confidence 467899999999999999999999999996666555543 222 5777888888888888765 3344444433333
Q ss_pred eecc------ccccCCCCcEEEECHHHHHHHHH-hcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 103 HIGH------SKHLSERSKIVFKTAGVLLDEMR-DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 103 ~v~~------~~~~~~~t~Iiv~T~g~Ll~~l~-~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
-++. .....++++|+|+|||.|...+. .+.+++.+++++|+|||+ |.++.||...+-+.+...+++.|.+++
T Consensus 163 lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt~Lf 241 (476)
T KOG0330|consen 163 LVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQTFLF 241 (476)
T ss_pred EecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccceEEEE
Confidence 3333 23457889999999999999998 577778899999999999 999999988877777777788999999
Q ss_pred eeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccch
Q 001758 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1017)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1017)
|||+.. +..+.... .-..++++.. +.. | .-++... ..|...+..+ .+
T Consensus 242 sATMt~-kv~kL~ra-sl~~p~~v~~-s~k-----y----~tv~~lk---------------Q~ylfv~~k~-K~----- 288 (476)
T KOG0330|consen 242 SATMTK-KVRKLQRA-SLDNPVKVAV-SSK-----Y----QTVDHLK---------------QTYLFVPGKD-KD----- 288 (476)
T ss_pred Eeecch-hhHHHHhh-ccCCCeEEec-cch-----h----cchHHhh---------------hheEeccccc-cc-----
Confidence 999852 23333321 1122233211 110 0 0011111 1111111110 00
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEc
Q 001758 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (1017)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVAT 334 (1017)
..+.++..... ++.+||||++....+.++-.|+. .++...+|||.|++..|.-.++.|+.+. .|+|||
T Consensus 289 -------~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~--lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T 357 (476)
T KOG0330|consen 289 -------TYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRN--LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT 357 (476)
T ss_pred -------hhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHh--cCcceecccchhhHHHHHHHHHHHhccCCcEEEec
Confidence 11112222222 57999999999999999999984 4589999999999999999999999887 999999
Q ss_pred CcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 335 niaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
|+|++|+|||.|++||| ||.|.....| +||+||+||+ ++|+++.|++.-+
T Consensus 358 DVaSRGLDip~Vd~VVN--------yDiP~~skDY----------IHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 358 DVASRGLDIPHVDVVVN--------YDIPTHSKDY----------IHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred chhcccCCCCCceEEEe--------cCCCCcHHHH----------HHHcccccccCCCcceEEEEehhh
Confidence 99999999999999999 9999877666 9999999999 6899999999733
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.6e-33 Score=333.11 Aligned_cols=312 Identities=19% Similarity=0.229 Sum_probs=218.4
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC-----------CCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----------MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~-----------~~~IivtqPrrlaa~s~a~rva~e~~~~ 95 (1017)
-.+++|.++++.+.+++++|+++|||||||..+...+++.. ..+++++.|++.+|.|+.+.+..... .
T Consensus 23 ~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~-~ 101 (456)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK-Y 101 (456)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhc-c
Confidence 46799999999999999999999999999976655554321 11588889999999998888765432 1
Q ss_pred cCCeeeEeecc------ccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCC
Q 001758 96 LGGEVGYHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (1017)
Q Consensus 96 lg~~VGy~v~~------~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~ 169 (1017)
++..+...++. ........+|+|+||++|+..+....+.+.++++||||||| +.++..+...+.+.+.....+
T Consensus 102 ~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~~ 180 (456)
T PRK10590 102 LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPAK 180 (456)
T ss_pred CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHHHHHhCCcc
Confidence 12111111111 11234578999999999999888777777799999999999 667777766555555445567
Q ss_pred ceEEEEeeccChH--HHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 001758 170 LRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1017)
Q Consensus 170 lklIlmSATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1017)
.+++++|||++.+ .+...+. .....+.+....... ......+.+.
T Consensus 181 ~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~--~~i~~~~~~~----------------------------- 227 (456)
T PRK10590 181 RQNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTAS--EQVTQHVHFV----------------------------- 227 (456)
T ss_pred CeEEEEeCCCcHHHHHHHHHHc--CCCeEEEEecccccc--cceeEEEEEc-----------------------------
Confidence 7999999998643 2322221 111111111100000 0000000000
Q ss_pred ccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC
Q 001758 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1017)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1017)
+ ..... +++..+..... ..++||||+++.+++.+++.|.. .++.+..+||+++.++|..+++.|+.+
T Consensus 228 --~---~~~k~----~~l~~l~~~~~--~~~~lVF~~t~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~R~~~l~~F~~g 294 (456)
T PRK10590 228 --D---KKRKR----ELLSQMIGKGN--WQQVLVFTRTKHGANHLAEQLNK--DGIRSAAIHGNKSQGARTRALADFKSG 294 (456)
T ss_pred --C---HHHHH----HHHHHHHHcCC--CCcEEEEcCcHHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 0 00111 22223322222 46899999999999999999974 357899999999999999999999999
Q ss_pred c-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 328 r-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
+ +|||||+++++|||||+|++||+ ||.+.... +|.||+|||||. ..|.++.+++.++..
T Consensus 295 ~~~iLVaTdv~~rGiDip~v~~VI~--------~~~P~~~~----------~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 295 DIRVLVATDIAARGLDIEELPHVVN--------YELPNVPE----------DYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred CCcEEEEccHHhcCCCcccCCEEEE--------eCCCCCHH----------HhhhhccccccCCCCeeEEEEecHHHHH
Confidence 8 99999999999999999999999 88887544 559999999999 579999999876543
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.5e-33 Score=334.40 Aligned_cols=312 Identities=17% Similarity=0.240 Sum_probs=214.1
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc------------CCCcEEEeccHHHHHHHHHHHHHhhcCC
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE------------NMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~------------~~~~IivtqPrrlaa~s~a~rva~e~~~ 94 (1017)
-.+++|.++++.+..++++|+++|||||||..+...++.. ....++++.|+|.+|.|+.+.+... +.
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l-~~ 221 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL-GK 221 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHH-hC
Confidence 3578999999999999999999999999996555544321 1236788888888888877665442 22
Q ss_pred ccCCeeeEeeccc------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCC
Q 001758 95 ELGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (1017)
Q Consensus 95 ~lg~~VGy~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~ 168 (1017)
.++..+...++.+ .......+|+|+|||+|+..+....+.+.++++||||||| +.++..|...+.+ ++...+
T Consensus 222 ~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~i~~-i~~~l~ 299 (518)
T PLN00206 222 GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQVMQ-IFQALS 299 (518)
T ss_pred CCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHHHHH-HHHhCC
Confidence 2222221111211 1234568999999999999998777777799999999999 5666666544433 334446
Q ss_pred CceEEEEeeccCh--HHHHHHHhhcCCCceeEEEEecCCCc-ceeeeeEeehHHHHHHHhccCCCCccccccccccCCCC
Q 001758 169 DLRVVLMSATADI--TKYRDYFRDLGRGERVEVLAIPSTNQ-RTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (1017)
Q Consensus 169 ~lklIlmSATld~--~~~~~~f~~~~~~~~v~v~~~p~~~~-~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (1017)
+.+++++|||++. +.+...+.. .++ .+.+..... .........+++
T Consensus 300 ~~q~l~~SATl~~~v~~l~~~~~~----~~~-~i~~~~~~~~~~~v~q~~~~~~-------------------------- 348 (518)
T PLN00206 300 QPQVLLFSATVSPEVEKFASSLAK----DII-LISIGNPNRPNKAVKQLAIWVE-------------------------- 348 (518)
T ss_pred CCcEEEEEeeCCHHHHHHHHHhCC----CCE-EEEeCCCCCCCcceeEEEEecc--------------------------
Confidence 7899999999864 344444421 111 111111000 000000000000
Q ss_pred CCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhcc
Q 001758 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (1017)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~ 325 (1017)
.......+.+++. ......+++|||++++..++.+++.|... .++.+..+||+++.++|..+++.|+
T Consensus 349 --------~~~k~~~l~~~l~----~~~~~~~~~iVFv~s~~~a~~l~~~L~~~-~g~~~~~~Hg~~~~~eR~~il~~Fr 415 (518)
T PLN00206 349 --------TKQKKQKLFDILK----SKQHFKPPAVVFVSSRLGADLLANAITVV-TGLKALSIHGEKSMKERREVMKSFL 415 (518)
T ss_pred --------chhHHHHHHHHHH----hhcccCCCEEEEcCCchhHHHHHHHHhhc-cCcceEEeeCCCCHHHHHHHHHHHH
Confidence 0001111112221 11112358999999999999999988642 3578999999999999999999999
Q ss_pred CCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhh
Q 001758 326 SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1017)
Q Consensus 326 ~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1017)
.|+ +|||||+++++|||+|+|++||+ ||.+.+ ..+|.||+|||||. ..|.++.++++++.
T Consensus 416 ~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d~P~s----------~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 416 VGEVPVIVATGVLGRGVDLLRVRQVII--------FDMPNT----------IKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred CCCCCEEEEecHhhccCCcccCCEEEE--------eCCCCC----------HHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 998 99999999999999999999999 998764 45669999999999 57999999987654
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7e-33 Score=336.06 Aligned_cols=313 Identities=21% Similarity=0.246 Sum_probs=221.0
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 001758 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~-----~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~V 100 (1017)
-..+++|.++++.+.+++++|+.||||||||.++...+++.. ...++++.|++.+|.|+++.+....+...+..+
T Consensus 27 ~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v 106 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNV 106 (629)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 357899999999999999999999999999987766665431 236888999999999998887765432223223
Q ss_pred eEeeccc------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEE
Q 001758 101 GYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1017)
Q Consensus 101 Gy~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIl 174 (1017)
....+.. ......++|+|+||+.|++.+....+.+.++++|||||||+ .++..|...+...+.......++++
T Consensus 107 ~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~di~~Il~~lp~~~q~ll 185 (629)
T PRK11634 107 VALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIEDVETIMAQIPEGHQTAL 185 (629)
T ss_pred EEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHHHHHHHHhCCCCCeEEE
Confidence 2221211 12345789999999999999988777777999999999995 4555666665555555567789999
Q ss_pred EeeccChHH--HHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccc
Q 001758 175 MSATADITK--YRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (1017)
Q Consensus 175 mSATld~~~--~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1017)
+|||++... +.+.|- . .+..+ .+....... ..+... |... .
T Consensus 186 fSAT~p~~i~~i~~~~l--~--~~~~i-~i~~~~~~~-~~i~q~-----------------------~~~v--------~ 228 (629)
T PRK11634 186 FSATMPEAIRRITRRFM--K--EPQEV-RIQSSVTTR-PDISQS-----------------------YWTV--------W 228 (629)
T ss_pred EEccCChhHHHHHHHHc--C--CCeEE-EccCccccC-CceEEE-----------------------EEEe--------c
Confidence 999986432 222221 1 11111 111100000 000000 0000 0
Q ss_pred cchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEE
Q 001758 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVI 331 (1017)
Q Consensus 253 ~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVI 331 (1017)
.....+.+..+ +. ... ...+||||+++..++.+++.|.. .++.+..+||+|++.+|..+++.|+.++ +||
T Consensus 229 -~~~k~~~L~~~---L~-~~~--~~~~IVF~~tk~~a~~l~~~L~~--~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~IL 299 (629)
T PRK11634 229 -GMRKNEALVRF---LE-AED--FDAAIIFVRTKNATLEVAEALER--NGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 (629)
T ss_pred -hhhHHHHHHHH---HH-hcC--CCCEEEEeccHHHHHHHHHHHHh--CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEE
Confidence 00111112222 22 222 35899999999999999999984 4578999999999999999999999998 999
Q ss_pred EEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhh
Q 001758 332 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1017)
Q Consensus 332 VATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1017)
|||+++++|||+|+|++||+ ||.|.+. .+|.||+|||||. +.|.++.++++.+.
T Consensus 300 VATdv~arGIDip~V~~VI~--------~d~P~~~----------e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 300 IATDVAARGLDVERISLVVN--------YDIPMDS----------ESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred EEcchHhcCCCcccCCEEEE--------eCCCCCH----------HHHHHHhccccCCCCcceEEEEechHHH
Confidence 99999999999999999999 9988755 4559999999999 56999999987543
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9e-33 Score=333.16 Aligned_cols=313 Identities=17% Similarity=0.227 Sum_probs=214.5
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC------------CCcEEEeccHHHHHHHHHHHHHhhcCC
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~------------~~~IivtqPrrlaa~s~a~rva~e~~~ 94 (1017)
-.+++|.++++.+++++++|+++|||||||..+..++++.. ..+++++.|++.++.|+++.+.. ++.
T Consensus 31 ~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~-l~~ 109 (572)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK-FGA 109 (572)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH-Hhc
Confidence 46899999999999999999999999999976655554321 13688889999999999887654 333
Q ss_pred ccCCeeeEeeccc------cccCCCCcEEEECHHHHHHHHHhc-CCCccCceEEEEeccccccccccHHHHHHHHHHhc-
Q 001758 95 ELGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK- 166 (1017)
Q Consensus 95 ~lg~~VGy~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~~-~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~- 166 (1017)
.++..++..++.. .......+|+|+||++|++.+... .+.+..+++||||||| +.++..|...+...+...
T Consensus 110 ~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~i~~il~~lp 188 (572)
T PRK04537 110 DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKDIRFLLRRMP 188 (572)
T ss_pred cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHHHHHHHHhcc
Confidence 3444444333221 123456799999999999988754 3455689999999999 455555554443322222
Q ss_pred -CCCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCC
Q 001758 167 -KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (1017)
Q Consensus 167 -~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (1017)
+.+.+++++|||++..........+... ..+...............+.+
T Consensus 189 ~~~~~q~ll~SATl~~~v~~l~~~~l~~p--~~i~v~~~~~~~~~i~q~~~~---------------------------- 238 (572)
T PRK04537 189 ERGTRQTLLFSATLSHRVLELAYEHMNEP--EKLVVETETITAARVRQRIYF---------------------------- 238 (572)
T ss_pred cccCceEEEEeCCccHHHHHHHHHHhcCC--cEEEeccccccccceeEEEEe----------------------------
Confidence 2367999999999754333222222111 111110000000000000000
Q ss_pred CCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhcc
Q 001758 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK 325 (1017)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~ 325 (1017)
........ .+..+..... ..++||||+++..++.+++.|... ++.+..+||+|+..+|..+++.|+
T Consensus 239 ------~~~~~k~~----~L~~ll~~~~--~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr 304 (572)
T PRK04537 239 ------PADEEKQT----LLLGLLSRSE--GARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQ 304 (572)
T ss_pred ------cCHHHHHH----HHHHHHhccc--CCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHH
Confidence 00001111 1222222222 468999999999999999999853 578999999999999999999999
Q ss_pred CCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhh
Q 001758 326 SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1017)
Q Consensus 326 ~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1017)
.+. +|||||+++++|||||+|++||+ ||.+.. ..+|+||+||+||. ..|.++.|+++.+.
T Consensus 305 ~G~~~VLVaTdv~arGIDip~V~~VIn--------yd~P~s----------~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 305 KGQLEILVATDVAARGLHIDGVKYVYN--------YDLPFD----------AEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred cCCCeEEEEehhhhcCCCccCCCEEEE--------cCCCCC----------HHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 988 99999999999999999999999 888764 45569999999999 67999999987543
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-32 Score=321.14 Aligned_cols=314 Identities=20% Similarity=0.242 Sum_probs=214.9
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~-----~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
.+++|.++++.+.++++++++||||||||..+...+++. ...+++++.|++.++.|+.+.+..... .++..++.
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~~~~~~ 129 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGD-YLKVRCHA 129 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhh-hcCceEEE
Confidence 588999999999999999999999999997666555543 223688899999999888776554321 22222221
Q ss_pred eecc------ccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 103 HIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 103 ~v~~------~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.++. ........+|+|+||+.|.+.+..+.+.+.++++|||||||+ ..+..+...+.+.+....++.++|++|
T Consensus 130 ~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~~~~~~~~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 130 CVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLSRGFKGQIYDVFKKLPPDVQVALFS 208 (401)
T ss_pred EECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHhcchHHHHHHHHhhCCCCcEEEEEE
Confidence 1111 112234579999999999999887766677999999999994 444444444444444556789999999
Q ss_pred eccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchh
Q 001758 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (1017)
Q Consensus 177 ATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1017)
||++.+... +...... .+..+. ++.... ..-..... +.. ......
T Consensus 209 AT~~~~~~~-~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~-----------------------~~~--------~~~~~~ 253 (401)
T PTZ00424 209 ATMPNEILE-LTTKFMR-DPKRIL-VKKDEL-TLEGIRQF-----------------------YVA--------VEKEEW 253 (401)
T ss_pred ecCCHHHHH-HHHHHcC-CCEEEE-eCCCCc-ccCCceEE-----------------------EEe--------cChHHH
Confidence 998654222 1111100 111111 111000 00000000 000 000000
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcC
Q 001758 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (1017)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATn 335 (1017)
.. ..+..+..... ..++||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|+.|+ +|||||+
T Consensus 254 ~~----~~l~~~~~~~~--~~~~ivF~~t~~~~~~l~~~l~~--~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~ 325 (401)
T PTZ00424 254 KF----DTLCDLYETLT--ITQAIIYCNTRRKVDYLTKKMHE--RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD 325 (401)
T ss_pred HH----HHHHHHHHhcC--CCeEEEEecCcHHHHHHHHHHHH--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc
Confidence 11 11222222222 35899999999999999999974 3578999999999999999999999998 9999999
Q ss_pred cccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 336 iaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
++++|||+|++++||+ ||.+. |..+|.||+|||||. ..|.|+.++++++..
T Consensus 326 ~l~~GiDip~v~~VI~--------~~~p~----------s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 326 LLARGIDVQQVSLVIN--------YDLPA----------SPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred cccCCcCcccCCEEEE--------ECCCC----------CHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 9999999999999999 88765 555669999999998 589999999987655
No 28
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-32 Score=326.49 Aligned_cols=314 Identities=26% Similarity=0.316 Sum_probs=230.5
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC-----C-c-EEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----E-P-ILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~-----~-~-IivtqPrrlaa~s~a~rva~e~~~~lg~~ 99 (1017)
-.+++|..+++.+..++++++.++||||||..+...+++... . . .+++.|+|.+|.|+++.+........+..
T Consensus 51 ~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~ 130 (513)
T COG0513 51 EPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLR 130 (513)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCcc
Confidence 467999999999999999999999999999777766665422 1 2 78888888999998876654322110111
Q ss_pred eeEeecc------ccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEE
Q 001758 100 VGYHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1017)
Q Consensus 100 VGy~v~~------~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklI 173 (1017)
+...++. ...+....+|+|+|||+|++++..+.+.+.++.++|+|||+ |.++..|...+.+.+....++.|++
T Consensus 131 ~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~p~~~qtl 209 (513)
T COG0513 131 VAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILKALPPDRQTL 209 (513)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhCCcccEEE
Confidence 2222221 12234469999999999999999887888899999999999 8999999999888888778899999
Q ss_pred EEeeccChHHHHHHHhhcCCCceeEEEEecCCCcc-eeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccc
Q 001758 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQR-TIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (1017)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~-~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1017)
++|||++. .+.++-...-. .++.+ .+...... ..-.+. ..|. ...
T Consensus 210 lfSAT~~~-~i~~l~~~~l~-~p~~i-~v~~~~~~~~~~~i~-----------------------q~~~--------~v~ 255 (513)
T COG0513 210 LFSATMPD-DIRELARRYLN-DPVEI-EVSVEKLERTLKKIK-----------------------QFYL--------EVE 255 (513)
T ss_pred EEecCCCH-HHHHHHHHHcc-CCcEE-EEccccccccccCce-----------------------EEEE--------EeC
Confidence 99999986 45555544322 22211 11100000 000000 0000 000
Q ss_pred cchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEE
Q 001758 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVI 331 (1017)
Q Consensus 253 ~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVI 331 (1017)
...... +++..+..... .+++|||+++...++.++..|... ++.+..+||+|++++|..+++.|+.++ +|+
T Consensus 256 ~~~~k~----~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vL 327 (513)
T COG0513 256 SEEEKL----ELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELRVL 327 (513)
T ss_pred CHHHHH----HHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 000112 33333433333 347999999999999999999854 489999999999999999999999998 999
Q ss_pred EEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 332 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 332 VATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
||||+|++|||||+|.+||+ ||.|...+.| .||+||+||. ..|.++.++++.
T Consensus 328 VaTDvaaRGiDi~~v~~Vin--------yD~p~~~e~y----------vHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 328 VATDVAARGLDIPDVSHVIN--------YDLPLDPEDY----------VHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred EEechhhccCCccccceeEE--------ccCCCCHHHh----------eeccCccccCCCCCeEEEEeCcH
Confidence 99999999999999999999 9999877766 9999999999 689999999863
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.3e-32 Score=322.83 Aligned_cols=308 Identities=19% Similarity=0.246 Sum_probs=211.3
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----C--------CCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N--------MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----~--------~~~IivtqPrrlaa~s~a~rva~e~~~~ 95 (1017)
.+++|.++++.+.+++++|+++|||||||+.+...+++. . ..+++++.|++.+|.++.+.+..... .
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~-~ 188 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTK-Y 188 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhc-c
Confidence 579999999999999999999999999996655554432 1 23678889999999998887765322 2
Q ss_pred cCCeeeEeeccc-------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc--
Q 001758 96 LGGEVGYHIGHS-------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-- 166 (1017)
Q Consensus 96 lg~~VGy~v~~~-------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~-- 166 (1017)
.|..+.-.++.. ......++|+|+||++|+..+......+.++++||||||| +.++..+...+ +.++..
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~l-~~i~~~~~ 266 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMGFIPQV-RQIIRQTP 266 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcccHHHH-HHHHHhCC
Confidence 232222221211 1123568999999999998887666666799999999999 44555554333 333332
Q ss_pred -CCCceEEEEeeccChH--HHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCC
Q 001758 167 -KNDLRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (1017)
Q Consensus 167 -~~~lklIlmSATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (1017)
..+.++|++|||+..+ .+.+.+.. . +..+...+...........+ +
T Consensus 267 ~~~~~q~i~~SAT~~~~~~~~~~~~~~--~--~~~v~~~~~~~~~~~~~~~~------------------------~--- 315 (475)
T PRK01297 267 RKEERQTLLFSATFTDDVMNLAKQWTT--D--PAIVEIEPENVASDTVEQHV------------------------Y--- 315 (475)
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhcc--C--CEEEEeccCcCCCCcccEEE------------------------E---
Confidence 2357999999998543 22222211 1 11111111000000000000 0
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHh
Q 001758 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (1017)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~ 323 (1017)
.........++.+++ .... .+++||||+++++++.+++.|... ++.+..+||+++.++|.++++.
T Consensus 316 -------~~~~~~k~~~l~~ll----~~~~--~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~ 380 (475)
T PRK01297 316 -------AVAGSDKYKLLYNLV----TQNP--WERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEG 380 (475)
T ss_pred -------EecchhHHHHHHHHH----HhcC--CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHH
Confidence 000011122232322 2222 468999999999999999999743 4788999999999999999999
Q ss_pred ccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 324 f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
|+.|+ +|||||+++++|||||++++||+ ||.+. |.++|+||+|||||. ..|.++.+++++
T Consensus 381 Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~~P~----------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 381 FREGKIRVLVATDVAGRGIHIDGISHVIN--------FTLPE----------DPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred HhCCCCcEEEEccccccCCcccCCCEEEE--------eCCCC----------CHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 99988 99999999999999999999999 77776 556779999999999 579999999976
Q ss_pred h
Q 001758 402 F 402 (1017)
Q Consensus 402 ~ 402 (1017)
+
T Consensus 443 d 443 (475)
T PRK01297 443 D 443 (475)
T ss_pred H
Confidence 4
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.9e-31 Score=316.43 Aligned_cols=312 Identities=17% Similarity=0.153 Sum_probs=208.0
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeecc-
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH- 106 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~- 106 (1017)
.+++|.++++++.+++++++++|||||||..+...++... +..+++.|.+.++.+...++.. .|.......|.....
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~-~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~~~~~~~ 89 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD-GITLVISPLISLMEDQVLQLKA-SGIPATFLNSSQSKEQ 89 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC-CcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeCCCCHHH
Confidence 5789999999999999999999999999954433333333 3556677777777777766653 333221111111000
Q ss_pred -----ccccCCCCcEEEECHHHHHHHH-HhcCC-CccCceEEEEeccccccc-cccHHHHH--HHHHHhcCCCceEEEEe
Q 001758 107 -----SKHLSERSKIVFKTAGVLLDEM-RDRGL-NALKYKVIILDEVHERSV-ESDLVLVC--VKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 107 -----~~~~~~~t~Iiv~T~g~Ll~~l-~~~~l-~l~~~~~IIIDEaHER~~-~~d~ll~~--lk~ll~~~~~lklIlmS 176 (1017)
........+|+|+||+.+.... ....+ ...++++|||||||..+- ..||...+ +..+....++.+++++|
T Consensus 90 ~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lT 169 (470)
T TIGR00614 90 QKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALT 169 (470)
T ss_pred HHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEe
Confidence 0112346799999999975422 11111 234899999999995432 22444333 33455556889999999
Q ss_pred eccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchh
Q 001758 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (1017)
Q Consensus 177 ATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1017)
||++.....+....++...+..+ .......+..+.+. .....
T Consensus 170 AT~~~~~~~di~~~l~l~~~~~~-~~s~~r~nl~~~v~-------------------------------------~~~~~ 211 (470)
T TIGR00614 170 ATASPSVREDILRQLNLKNPQIF-CTSFDRPNLYYEVR-------------------------------------RKTPK 211 (470)
T ss_pred cCCCHHHHHHHHHHcCCCCCcEE-eCCCCCCCcEEEEE-------------------------------------eCCcc
Confidence 99987766666554432222111 11100000000000 00000
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcC
Q 001758 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (1017)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATn 335 (1017)
.+.+++..+....+ +..+||||+++++++.++..|.. .++.+..+||+|+.++|..+++.|+.++ +|||||+
T Consensus 212 ---~~~~l~~~l~~~~~--~~~~IIF~~s~~~~e~la~~L~~--~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~ 284 (470)
T TIGR00614 212 ---ILEDLLRFIRKEFK--GKSGIIYCPSRKKSEQVTASLQN--LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV 284 (470)
T ss_pred ---HHHHHHHHHHHhcC--CCceEEEECcHHHHHHHHHHHHh--cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 11222322322222 34679999999999999999984 3578999999999999999999999998 9999999
Q ss_pred cccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 336 iaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
++++|||+|+|++||+ |++|.+ ..+|.||+|||||. .+|.|+.+|+..+..
T Consensus 285 ~~~~GID~p~V~~VI~--------~~~P~s----------~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 285 AFGMGINKPDVRFVIH--------YSLPKS----------MESYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred hhhccCCcccceEEEE--------eCCCCC----------HHHHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 9999999999999999 888774 45669999999999 589999999987654
No 31
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.98 E-value=1.7e-30 Score=316.50 Aligned_cols=309 Identities=18% Similarity=0.219 Sum_probs=210.2
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhH--HHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEee
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSS--QVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTt--qip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v 104 (1017)
..+++|.++++++.+++++++++|||+|||. ++|.++. . +.++++.|.+.++.+....+.. .|.......+...
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--~-g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~~~ 100 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--D-GLTLVVSPLISLMKDQVDQLLA-NGVAAACLNSTQT 100 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--C-CCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCCCC
Confidence 4668999999999999999999999999996 4554433 2 3567777887777777666654 2322211111000
Q ss_pred c------cccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEecccccccc-ccHHHH--HHHHHHhcCCCceEEEE
Q 001758 105 G------HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLV--CVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 105 ~------~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~-~d~ll~--~lk~ll~~~~~lklIlm 175 (1017)
. .........+|+|+||+.|........+...++++|||||||+.+-. .||... .+..+....++.+++++
T Consensus 101 ~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~l 180 (607)
T PRK11057 101 REQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL 180 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEE
Confidence 0 01122356789999999987532222233347999999999964432 234332 24445556788999999
Q ss_pred eeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccch
Q 001758 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1017)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1017)
|||++.....+....++...+... ........ +.| .. ... .
T Consensus 181 TAT~~~~~~~di~~~l~l~~~~~~--~~~~~r~n-----l~~-----------------------~v------~~~--~- 221 (607)
T PRK11057 181 TATADDTTRQDIVRLLGLNDPLIQ--ISSFDRPN-----IRY-----------------------TL------VEK--F- 221 (607)
T ss_pred ecCCChhHHHHHHHHhCCCCeEEE--ECCCCCCc-----cee-----------------------ee------eec--c-
Confidence 999987665555554332222211 11100000 000 00 000 0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEc
Q 001758 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (1017)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVAT 334 (1017)
. .+..++..+... . ++++||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|+.++ +|||||
T Consensus 222 ~---~~~~l~~~l~~~-~--~~~~IIFc~tr~~~e~la~~L~~--~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT 293 (607)
T PRK11057 222 K---PLDQLMRYVQEQ-R--GKSGIIYCNSRAKVEDTAARLQS--RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVAT 293 (607)
T ss_pred c---hHHHHHHHHHhc-C--CCCEEEEECcHHHHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEe
Confidence 0 011222222222 2 46899999999999999999984 4578999999999999999999999888 999999
Q ss_pred CcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 335 niaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
+++++|||+|+|++||+ ||.|. |..+|+||+|||||. .+|.|+.+|+..++.
T Consensus 294 ~a~~~GIDip~V~~VI~--------~d~P~----------s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 294 VAFGMGINKPNVRFVVH--------FDIPR----------NIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred chhhccCCCCCcCEEEE--------eCCCC----------CHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 99999999999999999 88876 445669999999999 579999999987754
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.97 E-value=8.8e-31 Score=321.18 Aligned_cols=311 Identities=17% Similarity=0.151 Sum_probs=204.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHH-HHHHHHHhhcCCccCCeeeEeecc
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVV-AVAKMVAKGRNCELGGEVGYHIGH 106 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~-s~a~rva~e~~~~lg~~VGy~v~~ 106 (1017)
.++.|.+++++++.++++++++|||+|||..+...++..+ +..+|+.|.+.++. ++.... . .+.......|..-..
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~-GiTLVISPLiSLmqDQV~~L~-~-~GI~Aa~L~s~~s~~ 537 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP-GITLVISPLVSLIQDQIMNLL-Q-ANIPAASLSAGMEWA 537 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC-CcEEEEeCHHHHHHHHHHHHH-h-CCCeEEEEECCCCHH
Confidence 5788999999999999999999999999954433333333 34566666666655 443332 2 222211111111000
Q ss_pred ------ccc--cCCCCcEEEECHHHHHHH--HHhc--CCC-ccCceEEEEeccccccc-cccHHHHHH--HHHHhcCCCc
Q 001758 107 ------SKH--LSERSKIVFKTAGVLLDE--MRDR--GLN-ALKYKVIILDEVHERSV-ESDLVLVCV--KQLLLKKNDL 170 (1017)
Q Consensus 107 ------~~~--~~~~t~Iiv~T~g~Ll~~--l~~~--~l~-l~~~~~IIIDEaHER~~-~~d~ll~~l--k~ll~~~~~l 170 (1017)
... .....+|+|+|||+|... +... .+. ...+++|||||||+-+- ..||...+. ..+....++.
T Consensus 538 eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~v 617 (1195)
T PLN03137 538 EQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNI 617 (1195)
T ss_pred HHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCC
Confidence 001 125689999999998521 1111 111 12589999999996432 235655443 3345566788
Q ss_pred eEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 001758 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (1017)
Q Consensus 171 klIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1017)
+++++|||++.....+....++...++.+ .......+..|.+. +
T Consensus 618 PilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~y~Vv-----------------------------~------ 661 (1195)
T PLN03137 618 PVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYSVV-----------------------------P------ 661 (1195)
T ss_pred CeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceEEEEe-----------------------------c------
Confidence 99999999987665555554432222211 11110001111000 0
Q ss_pred cccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-E
Q 001758 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (1017)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-k 329 (1017)
......+ .+...+..... .+..||||.++.+++.+++.|.. .++.+.++||+|+.++|..+++.|..++ +
T Consensus 662 --k~kk~le---~L~~~I~~~~~--~esgIIYC~SRke~E~LAe~L~~--~Gika~~YHAGLs~eeR~~vqe~F~~Gei~ 732 (1195)
T PLN03137 662 --KTKKCLE---DIDKFIKENHF--DECGIIYCLSRMDCEKVAERLQE--FGHKAAFYHGSMDPAQRAFVQKQWSKDEIN 732 (1195)
T ss_pred --cchhHHH---HHHHHHHhccc--CCCceeEeCchhHHHHHHHHHHH--CCCCeeeeeCCCCHHHHHHHHHHHhcCCCc
Confidence 0000111 22222222211 35789999999999999999984 4588999999999999999999999998 9
Q ss_pred EEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 330 VIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
|||||+++++|||+|+|++||+ ||.|.+++.| +||+|||||. .+|.|+.+|+..++.
T Consensus 733 VLVATdAFGMGIDkPDVR~VIH--------ydlPkSiEsY----------yQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 733 IICATVAFGMGINKPDVRFVIH--------HSLPKSIEGY----------HQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred EEEEechhhcCCCccCCcEEEE--------cCCCCCHHHH----------HhhhcccCCCCCCceEEEEecHHHHH
Confidence 9999999999999999999999 9988866555 9999999999 589999999987664
No 33
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=2.7e-31 Score=324.75 Aligned_cols=423 Identities=17% Similarity=0.201 Sum_probs=274.3
Q ss_pred CchHHHHHHHHHHH-cCCcEEEEcCCCCcHhHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHH--hhcCCccCCee
Q 001758 27 PVMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVA--KGRNCELGGEV 100 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~-~~~~vII~apTGSGKTtqip~~lle~---~~~~IivtqPrrlaa~s~a~rva--~e~~~~lg~~V 100 (1017)
-+++.|++++.... +++|+||++|||||||......++.. +..+++++.|.+.+|.+.++.+. +.+|. .|
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~Gi----rV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGI----RV 106 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCC----EE
Confidence 45667777777754 56999999999999996665555433 23589999999999999999888 44444 44
Q ss_pred eEeecccc---ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccc----cHHHHHHHHHHhcCCCceEE
Q 001758 101 GYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES----DLVLVCVKQLLLKKNDLRVV 173 (1017)
Q Consensus 101 Gy~v~~~~---~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~----d~ll~~lk~ll~~~~~lklI 173 (1017)
+-.++..+ .--.+++|+|+||+.+...+++......++++|||||+|- +.. -.+..++.++....+..|+|
T Consensus 107 ~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~--l~d~~RG~~lE~iv~r~~~~~~~~riv 184 (766)
T COG1204 107 GISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL--LGDRTRGPVLESIVARMRRLNELIRIV 184 (766)
T ss_pred EEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee--cCCcccCceehhHHHHHHhhCcceEEE
Confidence 44433322 2236799999999999998887766566999999999993 222 24556666776677779999
Q ss_pred EEeecc-ChHHHHHHHhhcCCCceeEEEEecCCCcc-eeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 001758 174 LMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQR-TIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1017)
Q Consensus 174 lmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~-~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1017)
++|||+ +.+.+++|.+.- ++.....|..-.. ..+...+.+ ......
T Consensus 185 gLSATlpN~~evA~wL~a~----~~~~~~rp~~l~~~v~~~~~~~~-----------------------~~~~~k----- 232 (766)
T COG1204 185 GLSATLPNAEEVADWLNAK----LVESDWRPVPLRRGVPYVGAFLG-----------------------ADGKKK----- 232 (766)
T ss_pred EEeeecCCHHHHHHHhCCc----ccccCCCCcccccCCccceEEEE-----------------------ecCccc-----
Confidence 999997 899999999741 1111111111000 000000000 000000
Q ss_pred ccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC--------------------CCC----------
Q 001758 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--------------------LSS---------- 301 (1017)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--------------------~~~---------- 301 (1017)
.......+.+..++..... .++++|||++++..+...++.|.. ...
T Consensus 233 ~~~~~~~~~~~~~v~~~~~----~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (766)
T COG1204 233 TWPLLIDNLALELVLESLA----EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEE 308 (766)
T ss_pred cccccchHHHHHHHHHHHh----cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHH
Confidence 0001111222222222222 157999999999998887777651 000
Q ss_pred -----CcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecC
Q 001758 302 -----FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVS 375 (1017)
Q Consensus 302 -----~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iS 375 (1017)
...+.+||+||+.++|..+++.|+.|. +||+||++++.|+|+|.-++||- -..+||+..+ .+.++
T Consensus 309 l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g-----~~~i~ 379 (766)
T COG1204 309 LAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGG-----IVDIP 379 (766)
T ss_pred HHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCC-----eEECc
Confidence 124788999999999999999999999 99999999999999999999983 2344776222 56789
Q ss_pred HhhHHHhcCCCCCCC---CCcEEEEe-chh---hhccccccCCchhhhccHHHHH-HHHHhhccccCCCh------HHhh
Q 001758 376 QSQAEQRRGRTGRTC---DGQVYRLV-TKS---FFGTLEDHECPAILRLSLRLQV-LLICCAESKAISDP------KVLL 441 (1017)
Q Consensus 376 kasa~QR~GRAGR~~---~G~c~rLy-s~~---~~~~l~~~~~PEI~r~~L~~~v-L~l~~~~~~~l~~~------~~~l 441 (1017)
+-++.||+|||||.+ -|..+.+. +.+ .+........||...+.|..-. +...+......++. ..|+
T Consensus 380 ~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~ 459 (766)
T COG1204 380 VLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFY 459 (766)
T ss_pred hhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHH
Confidence 999999999999993 46666555 322 2234556666776433332111 11111111222221 1222
Q ss_pred hhccCCC-------CCchHHHHHHHHHHhh-hcccCCCCCccccccchhhhcccCCChHHHHHHHHccc
Q 001758 442 QKALDPP-------YPEVVGDALDLLDHKR-ALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502 (1017)
Q Consensus 442 ~~~ldpP-------~~~~i~~Al~~L~~lg-aLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~~~ 502 (1017)
....-.| ....+..+++.|.+.+ .++.. .+.+..|++|+.++++.++|..++.+.....
T Consensus 460 ~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~--~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 460 ERTFYNPQTYGEGMLREEILASLRYLEENGLILDAD--WEALHATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred HHHHhhhhhccccchHHHHHHHHHHHHhccceeecc--ccccchhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 2222222 2345788899999986 66552 2456789999999999999999998766543
No 34
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.97 E-value=3.8e-30 Score=288.00 Aligned_cols=438 Identities=18% Similarity=0.166 Sum_probs=289.5
Q ss_pred chHHHHHHHHH-HHcCCcEEEEcCCCCcHhHHHHHH----HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 28 VMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQF----LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 28 i~~~Q~eil~a-i~~~~~vII~apTGSGKTtqip~~----lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
+.|+|.-++++ ++++++.+|+.+|+||||..--.. ++. +.++.+++.|-..+|.|-...+.+.. .++|-.|..
T Consensus 217 LlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-~g~KmlfLvPLVALANQKy~dF~~rY-s~Lglkvai 294 (830)
T COG1202 217 LLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-GGKKMLFLVPLVALANQKYEDFKERY-SKLGLKVAI 294 (830)
T ss_pred ecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-CCCeEEEEehhHHhhcchHHHHHHHh-hcccceEEE
Confidence 34567777766 678999999999999999542221 222 23577888898888888877776654 466655555
Q ss_pred eeccc----------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccc-----cccccccHHHHHHHHHHhcC
Q 001758 103 HIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH-----ERSVESDLVLVCVKQLLLKK 167 (1017)
Q Consensus 103 ~v~~~----------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaH-----ER~~~~d~ll~~lk~ll~~~ 167 (1017)
.|+.. .....+++|+|+|++=+.-+++.+. .+.+++.|||||+| ||+.. |.+++.++....
T Consensus 295 rVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~-~lgdiGtVVIDEiHtL~deERG~R---LdGLI~RLr~l~ 370 (830)
T COG1202 295 RVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK-DLGDIGTVVIDEIHTLEDEERGPR---LDGLIGRLRYLF 370 (830)
T ss_pred EechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC-cccccceEEeeeeeeccchhcccc---hhhHHHHHHHhC
Confidence 54321 1235678999999998888777652 35699999999999 34444 445666666667
Q ss_pred CCceEEEEeecc-ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCC
Q 001758 168 NDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1017)
Q Consensus 168 ~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1017)
++.|+|.+|||+ |++.+++.++. ..|.....|.+-..+. .
T Consensus 371 ~~AQ~i~LSATVgNp~elA~~l~a----~lV~y~~RPVplErHl-----v------------------------------ 411 (830)
T COG1202 371 PGAQFIYLSATVGNPEELAKKLGA----KLVLYDERPVPLERHL-----V------------------------------ 411 (830)
T ss_pred CCCeEEEEEeecCChHHHHHHhCC----eeEeecCCCCChhHee-----e------------------------------
Confidence 899999999997 99999999974 2222222222110000 0
Q ss_pred CccccccchhHHHHHHHHHHHHHhhC--CCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhc
Q 001758 247 SMANAEIKPEVHKLIHDLVLHIHKNE--SDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC 324 (1017)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~--~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f 324 (1017)
-.....+..++|..++..-..+. ....|++|||.++++.++.++..|.. .++++.++|+||+..+|+.++..|
T Consensus 412 ---f~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~--kG~~a~pYHaGL~y~eRk~vE~~F 486 (830)
T COG1202 412 ---FARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTG--KGLKAAPYHAGLPYKERKSVERAF 486 (830)
T ss_pred ---eecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhc--CCcccccccCCCcHHHHHHHHHHH
Confidence 00011122344444443322222 22368999999999999999999984 479999999999999999999999
Q ss_pred cCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC---CCCcEEEEech
Q 001758 325 KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTK 400 (1017)
Q Consensus 325 ~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~---~~G~c~rLys~ 400 (1017)
..+. .+||+|..++.|+|+|.-.+|.++ -.+-..|+|..++.||.|||||. ..|++|.|...
T Consensus 487 ~~q~l~~VVTTAAL~AGVDFPASQVIFEs--------------LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 487 AAQELAAVVTTAALAAGVDFPASQVIFES--------------LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hcCCcceEeehhhhhcCCCCchHHHHHHH--------------HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9988 999999999999999987776641 12345799999999999999999 57999999876
Q ss_pred h-hhccccccCCchh-----------hhcc-----HHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHh
Q 001758 401 S-FFGTLEDHECPAI-----------LRLS-----LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHK 463 (1017)
Q Consensus 401 ~-~~~~l~~~~~PEI-----------~r~~-----L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~l 463 (1017)
. .|..-.+.+.-|+ .-.. -.+.+|.-.+.. ...++........+- ..-....++..|++.
T Consensus 553 g~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA~~~v~-~s~~~i~~v~~~~~g--~~~~~~k~l~~Lee~ 629 (830)
T COG1202 553 GKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLASAGVT-NSLSVIERVNSLMLG--AAFDPKKALSKLEEY 629 (830)
T ss_pred ChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHHHhhhc-CcHHHHhhcChhhcc--ccCCHHHHHHHHHhc
Confidence 3 4443222222221 1110 112233321111 122222222111111 112357899999999
Q ss_pred hhcccCCCCCc-cccccchhhhcccCCChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHHHHHhh
Q 001758 464 RALQKISPRGR-YEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYT 537 (1017)
Q Consensus 464 gaLd~~~~~g~-~~lT~lG~~la~lPldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~ 537 (1017)
|.|..+ |+ .++|+.|+.++..-+.|..|-.|..+. .-..+.+-|++.+.-.....+.++-+++.....+
T Consensus 630 g~i~~~---G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v--~~~~~pl~i~~~l~pfE~ayls~~l~r~i~~~~~ 699 (830)
T COG1202 630 GMIKKK---GNIVRPTPYGRAVAMSFLGPSEAEFIREGV--LASMDPLRIAAELEPFENAYLSGFLKRAIESALR 699 (830)
T ss_pred CCeecc---CCEeeeccccceeEEeecCchHHHHHHHhh--hccCChHhHhhccccccccccChHHHHHHHHHhc
Confidence 999874 54 689999999999999999998877653 2234567788777533323333433444333333
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=2.1e-30 Score=320.26 Aligned_cols=322 Identities=16% Similarity=0.137 Sum_probs=207.1
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHh----cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle----~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
.++++|.++++.+.+++++|+++|||||||..+...+++ ....+++++.|++.+|.++.+.+.... ..+..++.
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~--~~~i~v~~ 113 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT--LRGVRPAT 113 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc--cCCeEEEE
Confidence 589999999999999999999999999999665555443 233478888899999999988877643 11222222
Q ss_pred eecc-----ccccCCCCcEEEECHHHHHHHHHhcC----CCccCceEEEEeccccccccc--cHHHHHHHH---HHhc-C
Q 001758 103 HIGH-----SKHLSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHERSVES--DLVLVCVKQ---LLLK-K 167 (1017)
Q Consensus 103 ~v~~-----~~~~~~~t~Iiv~T~g~Ll~~l~~~~----l~l~~~~~IIIDEaHER~~~~--d~ll~~lk~---ll~~-~ 167 (1017)
..+. ......+++|+++||++|...+.... ..+.++++|||||||+. .+. ..+..++++ +... .
T Consensus 114 ~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~-~g~fg~~~~~il~rL~ri~~~~g 192 (742)
T TIGR03817 114 YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY-RGVFGSHVALVLRRLRRLCARYG 192 (742)
T ss_pred EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc-cCccHHHHHHHHHHHHHHHHhcC
Confidence 1111 11234568999999999975443211 11448999999999952 221 112223333 3322 3
Q ss_pred CCceEEEEeecc-ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCC
Q 001758 168 NDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1017)
Q Consensus 168 ~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1017)
.+.|+|++|||+ ++..+.+.+.. .++.++.....+... ..+.+..... .. . .....
T Consensus 193 ~~~q~i~~SATi~n~~~~~~~l~g----~~~~~i~~~~~~~~~---~~~~~~~p~~--~~-------------~-~~~~~ 249 (742)
T TIGR03817 193 ASPVFVLASATTADPAAAASRLIG----APVVAVTEDGSPRGA---RTVALWEPPL--TE-------------L-TGENG 249 (742)
T ss_pred CCCEEEEEecCCCCHHHHHHHHcC----CCeEEECCCCCCcCc---eEEEEecCCc--cc-------------c-ccccc
Confidence 568999999998 45555544422 223333222211110 0110000000 00 0 00000
Q ss_pred CccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCC------CCCcEEEEecCCCCHHHHHHH
Q 001758 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL------SSFFKVHILHSSVDTEQALMA 320 (1017)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~------~~~~~v~~lHs~l~~~er~~i 320 (1017)
............ +++..+... +.++||||++++.++.++..|... ..+..+..+||++++++|..+
T Consensus 250 ~~~r~~~~~~~~----~~l~~l~~~----~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~i 321 (742)
T TIGR03817 250 APVRRSASAEAA----DLLADLVAE----GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRREL 321 (742)
T ss_pred cccccchHHHHH----HHHHHHHHC----CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHH
Confidence 000000011122 222222222 368999999999999999887642 113578899999999999999
Q ss_pred HHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEe
Q 001758 321 MKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLV 398 (1017)
Q Consensus 321 ~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLy 398 (1017)
++.|++|+ ++|||||++|+|||||++++||+ ||.|. |.++|+||+|||||. ..|.++.+.
T Consensus 322 e~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~~P~----------s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 322 ERALRDGELLGVATTNALELGVDISGLDAVVI--------AGFPG----------TRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred HHHHHcCCceEEEECchHhccCCcccccEEEE--------eCCCC----------CHHHHHHhccccCCCCCCcEEEEEe
Confidence 99999999 99999999999999999999999 88776 445669999999999 579999888
Q ss_pred ch
Q 001758 399 TK 400 (1017)
Q Consensus 399 s~ 400 (1017)
+.
T Consensus 384 ~~ 385 (742)
T TIGR03817 384 RD 385 (742)
T ss_pred CC
Confidence 63
No 36
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=286.18 Aligned_cols=331 Identities=20% Similarity=0.271 Sum_probs=221.9
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC-----------CcEEEeccHHHHHHHHHHH---HHhh-
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----------EPILCTQPRRFAVVAVAKM---VAKG- 91 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~-----------~~IivtqPrrlaa~s~a~r---va~e- 91 (1017)
-.+++|...++.+.++++|++.++||||||.++...+++.-. +.+|++++ |.+|.|+.+- +...
T Consensus 28 ~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPT-RELa~QI~~V~~~F~~~l 106 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPT-RELARQIREVAQPFLEHL 106 (567)
T ss_pred ccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCc-HHHHHHHHHHHHHHHHhh
Confidence 368999999999999999999999999999877777665421 13555554 5555554433 2222
Q ss_pred cCCccCCeeeEe-eccc--cccCCCCcEEEECHHHHHHHHHhc--CCCccCceEEEEeccccccccccHHHHHHHHHHhc
Q 001758 92 RNCELGGEVGYH-IGHS--KHLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK 166 (1017)
Q Consensus 92 ~~~~lg~~VGy~-v~~~--~~~~~~t~Iiv~T~g~Ll~~l~~~--~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~ 166 (1017)
.+...--.||-. ++.+ ....+.++|+|+|||+|+..++.. .++..+++++|+|||+ |.++..|-..+-.++-..
T Consensus 107 ~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~L 185 (567)
T KOG0345|consen 107 PNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFL 185 (567)
T ss_pred hccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhc
Confidence 111111123321 1111 112467889999999999999863 3444589999999999 999999988877777666
Q ss_pred CCCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCC
Q 001758 167 KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1017)
Q Consensus 167 ~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1017)
....+.-++|||...+ ..+.+. .|-..++.|.--...... .+..+...|.
T Consensus 186 PKQRRTGLFSATq~~~-v~dL~r-aGLRNpv~V~V~~k~~~~-----------------------tPS~L~~~Y~----- 235 (567)
T KOG0345|consen 186 PKQRRTGLFSATQTQE-VEDLAR-AGLRNPVRVSVKEKSKSA-----------------------TPSSLALEYL----- 235 (567)
T ss_pred ccccccccccchhhHH-HHHHHH-hhccCceeeeeccccccc-----------------------Cchhhcceee-----
Confidence 6777899999997532 333332 222233333111100000 0000000110
Q ss_pred CccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccC
Q 001758 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (1017)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1017)
... ++ +.. ..+.++..+.. .+++|||.+|-..++.....+........+..+||.|...+|..+++.|+.
T Consensus 236 ---v~~--a~--eK~-~~lv~~L~~~~--~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 236 ---VCE--AD--EKL-SQLVHLLNNNK--DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred ---Eec--HH--HHH-HHHHHHHhccc--cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 000 00 011 11222222222 479999999999999988888776667889999999999999999999987
Q ss_pred Cc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEech--hh
Q 001758 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK--SF 402 (1017)
Q Consensus 327 gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~--~~ 402 (1017)
.. .+++|||+|++|||||+|++||+ ||+|...+++ .||+||+||. +.|..+.+..+ +.
T Consensus 306 ~~~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~~~F----------vHR~GRTaR~gr~G~Aivfl~p~E~a 367 (567)
T KOG0345|consen 306 LSNGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKDPSSF----------VHRCGRTARAGREGNAIVFLNPREEA 367 (567)
T ss_pred ccCceEEeehhhhccCCCCCceEEEe--------cCCCCChhHH----------HhhcchhhhccCccceEEEecccHHH
Confidence 55 99999999999999999999999 9999987766 9999999999 57887766544 45
Q ss_pred hcc-ccccCCchhhhc
Q 001758 403 FGT-LEDHECPAILRL 417 (1017)
Q Consensus 403 ~~~-l~~~~~PEI~r~ 417 (1017)
|-. |.-...|++-+.
T Consensus 368 YveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 368 YVEFLRIKGKVELERI 383 (567)
T ss_pred HHHHHHhcCccchhhh
Confidence 543 444445665553
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.97 E-value=5.1e-30 Score=322.68 Aligned_cols=317 Identities=19% Similarity=0.216 Sum_probs=207.3
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----C-------CCcEEEeccHHHHHHHHHHHHHh------
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N-------MEPILCTQPRRFAVVAVAKMVAK------ 90 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----~-------~~~IivtqPrrlaa~s~a~rva~------ 90 (1017)
++++|.++++.+.++++++|++|||||||..+...+++. . ...++++.|.+.++.++.+++..
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999997665554421 1 12578888999999888765432
Q ss_pred ----hcCCcc-CCeeeEeecccc------ccCCCCcEEEECHHHHHHHHHhcCC--CccCceEEEEeccccccccc---c
Q 001758 91 ----GRNCEL-GGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHERSVES---D 154 (1017)
Q Consensus 91 ----e~~~~l-g~~VGy~v~~~~------~~~~~t~Iiv~T~g~Ll~~l~~~~l--~l~~~~~IIIDEaHER~~~~---d 154 (1017)
..|..+ +..|+...+... .....++|+|+|||.|...+....+ .+.++++|||||||+ ..+. .
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~-l~~~~RG~ 191 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS-LAENKRGV 191 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh-hccCccHH
Confidence 223333 223333322211 1234679999999999876654322 234899999999995 2222 1
Q ss_pred HHHHHHHHHHhc-CCCceEEEEeecc-ChHHHHHHHhhcC---CCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCC
Q 001758 155 LVLVCVKQLLLK-KNDLRVVLMSATA-DITKYRDYFRDLG---RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDH 229 (1017)
Q Consensus 155 ~ll~~lk~ll~~-~~~lklIlmSATl-d~~~~~~~f~~~~---~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~ 229 (1017)
.+...+.++... .++.++|++|||+ +.+.+.+|+.... ...++.++..... ..+...+..
T Consensus 192 ~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~---k~~~i~v~~------------ 256 (876)
T PRK13767 192 HLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV---KPFDIKVIS------------ 256 (876)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC---ccceEEEec------------
Confidence 223334444433 3678999999998 5678888886431 1222333221110 011111100
Q ss_pred CCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCC----CCcEE
Q 001758 230 GMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS----SFFKV 305 (1017)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~----~~~~v 305 (1017)
+..+..... .......+...+..+... .+++||||+|++.++.++..|.... .+..+
T Consensus 257 --------------p~~~l~~~~-~~~~~~~l~~~L~~~i~~----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i 317 (876)
T PRK13767 257 --------------PVDDLIHTP-AEEISEALYETLHELIKE----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNI 317 (876)
T ss_pred --------------cCccccccc-cchhHHHHHHHHHHHHhc----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccce
Confidence 000000000 001111112222222221 3689999999999999999987532 23679
Q ss_pred EEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcC
Q 001758 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (1017)
Q Consensus 306 ~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~G 384 (1017)
..+||+|+.++|..+++.|++|. +|||||+++|+|||||+|++||+ |+.|. |.++|.||+|
T Consensus 318 ~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~~P~----------sv~~ylQRiG 379 (876)
T PRK13767 318 GAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LGSPK----------SVSRLLQRIG 379 (876)
T ss_pred eeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eCCCC----------CHHHHHHhcc
Confidence 99999999999999999999998 99999999999999999999998 88776 4566799999
Q ss_pred CCCCC----CCCcEEEE
Q 001758 385 RTGRT----CDGQVYRL 397 (1017)
Q Consensus 385 RAGR~----~~G~c~rL 397 (1017)
||||. ..|.++.+
T Consensus 380 RaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 380 RAGHRLGEVSKGRIIVV 396 (876)
T ss_pred cCCCCCCCCCcEEEEEc
Confidence 99987 24666654
No 38
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=288.44 Aligned_cols=318 Identities=21% Similarity=0.263 Sum_probs=229.3
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----CC-----CcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 001758 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NM-----EPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----~~-----~~IivtqPrrlaa~s~a~rva~e~~~~l 96 (1017)
--++++|+..+..++.++++++.|-||||||.++.....+. .. -.++++.|+|.+|.|.+.-..+.+...-
T Consensus 103 ~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~ 182 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE 182 (543)
T ss_pred cchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 34788999999999999999999999999995544433332 11 1577888888888888777666554443
Q ss_pred CCeeeEeeccccc------cCCCCcEEEECHHHHHHHHHhc-CCCccCceEEEEeccccccccccHHHHHHHHHHhcCCC
Q 001758 97 GGEVGYHIGHSKH------LSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (1017)
Q Consensus 97 g~~VGy~v~~~~~------~~~~t~Iiv~T~g~Ll~~l~~~-~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~ 169 (1017)
+..||+.++..+. .....+|+|+|||.|+..++.. ++...+..++|+|||+ |.++..|-..+.+++-.....
T Consensus 183 ~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk~ 261 (543)
T KOG0342|consen 183 SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPKQ 261 (543)
T ss_pred CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHHHHhcccc
Confidence 5667777665432 2448899999999999999864 3333477899999999 999999988888877777778
Q ss_pred ceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 001758 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1017)
Q Consensus 170 lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1017)
.|..++|||.+. +..+.....-..+++-+...+.... .+.+.+...|...+..
T Consensus 262 rqt~LFSAT~~~-kV~~l~~~~L~~d~~~v~~~d~~~~-----------------------~The~l~Qgyvv~~~~--- 314 (543)
T KOG0342|consen 262 RQTLLFSATQPS-KVKDLARGALKRDPVFVNVDDGGER-----------------------ETHERLEQGYVVAPSD--- 314 (543)
T ss_pred ceeeEeeCCCcH-HHHHHHHHhhcCCceEeecCCCCCc-----------------------chhhcccceEEecccc---
Confidence 899999999874 4555554332223332222221110 0111111111111110
Q ss_pred ccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-
Q 001758 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1017)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1017)
.. +-++..+ +.++.. ..+|+||++|...+..+++.|+. -++.|.-+||+.++..|..++..|....
T Consensus 315 -----~~-f~ll~~~---LKk~~~--~~KiiVF~sT~~~vk~~~~lL~~--~dlpv~eiHgk~~Q~kRT~~~~~F~kaes 381 (543)
T KOG0342|consen 315 -----SR-FSLLYTF---LKKNIK--RYKIIVFFSTCMSVKFHAELLNY--IDLPVLEIHGKQKQNKRTSTFFEFCKAES 381 (543)
T ss_pred -----ch-HHHHHHH---HHHhcC--CceEEEEechhhHHHHHHHHHhh--cCCchhhhhcCCcccccchHHHHHhhccc
Confidence 01 1111122 222222 36999999999999999999984 4588999999999999999999998776
Q ss_pred EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 329 kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
-|+|||||+++|+|+|+|++||. ||+|...+.| +||.||+||. +.|..+.+..+.+
T Consensus 382 gIL~cTDVaARGlD~P~V~~VvQ--------~~~P~d~~~Y----------IHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 382 GILVCTDVAARGLDIPDVDWVVQ--------YDPPSDPEQY----------IHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred ceEEecchhhccCCCCCceEEEE--------eCCCCCHHHH----------HHHhccccccCCCceEEEEeChhH
Confidence 99999999999999999999999 9999866555 9999999998 5799998887753
No 39
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.1e-31 Score=290.10 Aligned_cols=317 Identities=24% Similarity=0.322 Sum_probs=230.7
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC--------CcEEEeccHHHHHHHH---HHHHHhhcCCcc
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--------EPILCTQPRRFAVVAV---AKMVAKGRNCEL 96 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~--------~~IivtqPrrlaa~s~---a~rva~e~~~~l 96 (1017)
.+|+|...|+..+-+++++.||.||||||..+...++|... .+|+|+.|+|.+|+|+ .+.+++.....+
T Consensus 204 PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~ 283 (691)
T KOG0338|consen 204 PTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITV 283 (691)
T ss_pred CCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhcccee
Confidence 56889999999999999999999999999888888887532 2788888888887765 455666666665
Q ss_pred CCeeeE-eec-cccccCCCCcEEEECHHHHHHHHHh-cCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEE
Q 001758 97 GGEVGY-HIG-HSKHLSERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1017)
Q Consensus 97 g~~VGy-~v~-~~~~~~~~t~Iiv~T~g~Ll~~l~~-~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklI 173 (1017)
|-.||- .++ ++..+...++|+|+|||.|...|.+ ..+.+.++.++|+|||+ |+++..|-..+-..+.....+.|.+
T Consensus 284 ~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFademnEii~lcpk~RQTm 362 (691)
T KOG0338|consen 284 GLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADEMNEIIRLCPKNRQTM 362 (691)
T ss_pred eeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHHHHHHHHhccccccce
Confidence 555542 222 2344577899999999999999985 45667799999999999 9999888776655555556678999
Q ss_pred EEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 001758 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (1017)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1017)
++|||+. +.+.+... +....|+.++.-|...... . +..+....+ +.. ...
T Consensus 363 LFSATMt-eeVkdL~s-lSL~kPvrifvd~~~~~a~-------~-------------LtQEFiRIR----~~r----e~d 412 (691)
T KOG0338|consen 363 LFSATMT-EEVKDLAS-LSLNKPVRIFVDPNKDTAP-------K-------------LTQEFIRIR----PKR----EGD 412 (691)
T ss_pred eehhhhH-HHHHHHHH-hhcCCCeEEEeCCccccch-------h-------------hhHHHheec----ccc----ccc
Confidence 9999986 33444432 2233456555444321100 0 000110000 000 001
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEE
Q 001758 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (1017)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIV 332 (1017)
.+. .+..++.... ...++||+.|.+.+.++.-+|. .-++.+.-+||+|+++||.+.++.|+... .|+|
T Consensus 413 Rea---~l~~l~~rtf------~~~~ivFv~tKk~AHRl~IllG--Llgl~agElHGsLtQ~QRlesL~kFk~~eidvLi 481 (691)
T KOG0338|consen 413 REA---MLASLITRTF------QDRTIVFVRTKKQAHRLRILLG--LLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLI 481 (691)
T ss_pred cHH---HHHHHHHHhc------ccceEEEEehHHHHHHHHHHHH--HhhchhhhhcccccHHHHHHHHHHHHhccCCEEE
Confidence 111 1112222111 3589999999999999988876 33478889999999999999999999998 9999
Q ss_pred EcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 333 ATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
||++|++|+||++|..||| |+.|..++.| +||.||+.|. +.|..+.|..+++-.
T Consensus 482 aTDvAsRGLDI~gV~tVIN--------y~mP~t~e~Y----------~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 482 ATDVASRGLDIEGVQTVIN--------YAMPKTIEHY----------LHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred EechhhccCCccceeEEEe--------ccCchhHHHH----------HHHhhhhhhcccCcceEEEeccccHH
Confidence 9999999999999999999 9988866655 9999999999 689999999987543
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=2.6e-29 Score=306.44 Aligned_cols=306 Identities=18% Similarity=0.178 Sum_probs=209.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeecc-
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH- 106 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~- 106 (1017)
.++.|.++++++.+++++++++|||+|||..+..+.+... +..+|+.|.+.++.+....+.. +|. .+.+....
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~-g~~lVisPl~sL~~dq~~~l~~-~gi----~~~~~~s~~ 87 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK-GLTVVISPLISLMKDQVDQLRA-AGV----AAAYLNSTL 87 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC-CcEEEEcCCHHHHHHHHHHHHH-cCC----cEEEEeCCC
Confidence 5789999999999999999999999999954433333333 3456667777777766666654 333 23322111
Q ss_pred --c-------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEecccccccc-ccHHHHH--HHHHHhcCCCceEEE
Q 001758 107 --S-------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVC--VKQLLLKKNDLRVVL 174 (1017)
Q Consensus 107 --~-------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~-~d~ll~~--lk~ll~~~~~lklIl 174 (1017)
. .......+|+|+||+.|........+...++++|||||||.-+.. .||...+ +..+....++.++|+
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~ 167 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIA 167 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEE
Confidence 1 112356799999999997543333333458999999999964422 3454333 333444556777999
Q ss_pred EeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccc
Q 001758 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1017)
Q Consensus 175 mSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1017)
+|||++.....+....++...+..+.. .....+..+.+. . .
T Consensus 168 lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~-------------------------------------~-~ 208 (591)
T TIGR01389 168 LTATADAETRQDIRELLRLADANEFIT-SFDRPNLRFSVV-------------------------------------K-K 208 (591)
T ss_pred EEeCCCHHHHHHHHHHcCCCCCCeEec-CCCCCCcEEEEE-------------------------------------e-C
Confidence 999998776666655443222221111 000000000000 0 0
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEE
Q 001758 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1017)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVA 333 (1017)
....+. +...+... . ++++||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|..++ +||||
T Consensus 209 ~~~~~~---l~~~l~~~-~--~~~~IIf~~sr~~~e~la~~L~~--~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVa 280 (591)
T TIGR01389 209 NNKQKF---LLDYLKKH-R--GQSGIIYASSRKKVEELAERLES--QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVA 280 (591)
T ss_pred CCHHHH---HHHHHHhc-C--CCCEEEEECcHHHHHHHHHHHHh--CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 001111 22222221 1 46899999999999999999974 4578899999999999999999999988 99999
Q ss_pred cCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 334 TniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
|+++++|||+|+|++||+ ||++.+. .+|.||+|||||. .+|.|+.+|+..+..
T Consensus 281 T~a~~~GID~p~v~~VI~--------~~~p~s~----------~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 281 TNAFGMGIDKPNVRFVIH--------YDMPGNL----------ESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred echhhccCcCCCCCEEEE--------cCCCCCH----------HHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 999999999999999999 8887754 4559999999999 489999999987754
No 41
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.3e-29 Score=281.64 Aligned_cols=355 Identities=19% Similarity=0.277 Sum_probs=242.9
Q ss_pred cCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHH----hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 001758 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~ll----e~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~ 98 (1017)
...+-.+.||..+....+.+ +++|+.|||-|||+.....+. +.+ ++++++.|++-++.|.+....+.++.+-..
T Consensus 11 p~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-GKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred cccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-CeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 34578889999999888774 999999999999965554443 333 389999999999999999999988876554
Q ss_pred eeeEe--eccc--cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEE
Q 001758 99 EVGYH--IGHS--KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1017)
Q Consensus 99 ~VGy~--v~~~--~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIl 174 (1017)
.+... ++-+ .....+.+|+|+||+++.+-|..+.+++.++++||+|||| |....--.-.+.+..+....+..+++
T Consensus 89 i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEE
Confidence 43332 2222 1235678999999999999999988888899999999999 88887777778888888888999999
Q ss_pred Eeecc--ChHHHHHHHhhcCCCceeEEEEecCCC-cce-------eeeeEee--------hHHH----HHHH---hccCC
Q 001758 175 MSATA--DITKYRDYFRDLGRGERVEVLAIPSTN-QRT-------IFQRRVS--------YLEQ----VTEL---LGVDH 229 (1017)
Q Consensus 175 mSATl--d~~~~~~~f~~~~~~~~v~v~~~p~~~-~~~-------~~~v~v~--------yl~~----~~~~---l~~~~ 229 (1017)
||||+ +.+++.+...++|-. .+++....... ... .+.++.. .+.+ ..+. +++..
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe-~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~ 246 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIE-KVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIE 246 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcc-eEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 99997 788999999887532 22222211110 000 0111100 0000 0000 00000
Q ss_pred CCcc----cc--------------cc------------------------------cccc-------CC--C--------
Q 001758 230 GMTS----EL--------------SS------------------------------LRYC-------SG--P-------- 244 (1017)
Q Consensus 230 ~~~~----~~--------------~~------------------------------~~~~-------~~--~-------- 244 (1017)
+... .. .. .+|. .. .
T Consensus 247 ~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~ 326 (542)
T COG1111 247 SSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLA 326 (542)
T ss_pred ccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhc
Confidence 0000 00 00 0000 00 0
Q ss_pred CCCcc----------ccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEe------
Q 001758 245 SPSMA----------NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHIL------ 308 (1017)
Q Consensus 245 ~~~~~----------~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~l------ 308 (1017)
++++. .........+.+.+++.......+ +.+++||..-++.++.+...|.+.+....+.++
T Consensus 327 d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~--~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 327 DPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNG--DSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred ChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCC--CceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 00000 000000112233344444333333 469999999999999999999877655552222
Q ss_pred -cCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCC
Q 001758 309 -HSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRT 386 (1017)
Q Consensus 309 -Hs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRA 386 (1017)
..||++.+|.++++.|+.|. +|+|||+|+|+|+|||++++||- |++-.+.-.. .||+||+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvpSeIR~----------IQR~GRT 466 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVPSEIRS----------IQRKGRT 466 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCcHHHHH----------HHhhCcc
Confidence 24799999999999999999 99999999999999999999997 9987644444 9999999
Q ss_pred CCCCCCcEEEEechh
Q 001758 387 GRTCDGQVYRLVTKS 401 (1017)
Q Consensus 387 GR~~~G~c~rLys~~ 401 (1017)
||.++|.+|.|+++.
T Consensus 467 GR~r~Grv~vLvt~g 481 (542)
T COG1111 467 GRKRKGRVVVLVTEG 481 (542)
T ss_pred ccCCCCeEEEEEecC
Confidence 999999999999986
No 42
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=2.8e-30 Score=287.06 Aligned_cols=306 Identities=24% Similarity=0.318 Sum_probs=221.2
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----C----------CCcEEEeccHHHHHHHHHHH---HHh
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N----------MEPILCTQPRRFAVVAVAKM---VAK 90 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----~----------~~~IivtqPrrlaa~s~a~r---va~ 90 (1017)
.+++|..+++..++++++|.+++||||||..++..|+.. . ...-++..|+|.+|+++... +..
T Consensus 268 ptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~ 347 (673)
T KOG0333|consen 268 PTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGK 347 (673)
T ss_pred CchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999995555444321 0 12466778888888877543 333
Q ss_pred hcCCccCCeeeEeecccc---ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC
Q 001758 91 GRNCELGGEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1017)
Q Consensus 91 e~~~~lg~~VGy~v~~~~---~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~ 167 (1017)
-+|+.+-..||-. +++. +++..+.|+++|||.|+..+....+-+.+...||+|||+ |.++..|-..+.+.+-...
T Consensus 348 ~lg~r~vsvigg~-s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mP 425 (673)
T KOG0333|consen 348 PLGIRTVSVIGGL-SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMP 425 (673)
T ss_pred cccceEEEEeccc-chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCC
Confidence 3333333445544 3333 457889999999999999998877777799999999999 8888888777776664332
Q ss_pred -----C--------------------CceEEEEeeccCh--HHHH-HHHhhcCCCceeEEEEecCC--CcceeeeeEeeh
Q 001758 168 -----N--------------------DLRVVLMSATADI--TKYR-DYFRDLGRGERVEVLAIPST--NQRTIFQRRVSY 217 (1017)
Q Consensus 168 -----~--------------------~lklIlmSATld~--~~~~-~~f~~~~~~~~v~v~~~p~~--~~~~~~~v~v~y 217 (1017)
+ -.+.+.+|||+.+ +.++ .||.. |+ ++++... +..+.-+ .+.+
T Consensus 426 ssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~-----pv-~vtig~~gk~~~rveQ-~v~m 498 (673)
T KOG0333|consen 426 SSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR-----PV-VVTIGSAGKPTPRVEQ-KVEM 498 (673)
T ss_pred ccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC-----Ce-EEEeccCCCCccchhe-EEEE
Confidence 0 1478999999853 3444 45543 22 2222211 1111111 1110
Q ss_pred HHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhc
Q 001758 218 LEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK 297 (1017)
Q Consensus 218 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~ 297 (1017)
+ .. ......+.+++ ... ...+|+||+|+++.++.+++.|.
T Consensus 499 ~---------------------------------~e-d~k~kkL~eil----~~~--~~ppiIIFvN~kk~~d~lAk~Le 538 (673)
T KOG0333|consen 499 V---------------------------------SE-DEKRKKLIEIL----ESN--FDPPIIIFVNTKKGADALAKILE 538 (673)
T ss_pred e---------------------------------cc-hHHHHHHHHHH----HhC--CCCCEEEEEechhhHHHHHHHHh
Confidence 0 00 01112222222 222 24699999999999999999999
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCH
Q 001758 298 PLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQ 376 (1017)
Q Consensus 298 ~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSk 376 (1017)
+.+ +.+..|||+-+++||+.++..|+.+. .|+||||+|++|||||+|.+||+ ||....++.|
T Consensus 539 K~g--~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------ydmaksieDY------- 601 (673)
T KOG0333|consen 539 KAG--YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YDMAKSIEDY------- 601 (673)
T ss_pred hcc--ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cchhhhHHHH-------
Confidence 544 99999999999999999999999988 99999999999999999999999 9999877666
Q ss_pred hhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 377 SQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 377 asa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
.||+||+||. ..|.++.++++++
T Consensus 602 ---tHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 602 ---THRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred ---HHHhccccccccCceeEEEeccch
Confidence 9999999999 5799999999876
No 43
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-29 Score=263.50 Aligned_cols=313 Identities=20% Similarity=0.274 Sum_probs=225.8
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc---CC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~---~~--~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
...+|+.++..|.++++||..+..|+|||..+..-++.. .. ..++++.|+|.+|.|+.+-+.. +|...+..+--
T Consensus 50 PS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~a-lg~~mnvq~ha 128 (400)
T KOG0328|consen 50 PSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILA-LGDYMNVQCHA 128 (400)
T ss_pred chHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHH-hcccccceEEE
Confidence 457899999999999999999999999995444333322 11 2578888888888887776644 22222222222
Q ss_pred eeccc------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 103 HIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 103 ~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.++.. +.+.-..+++.+|||.++.++..+.+....+.++|+|||+| .++..|-..+...+....|+.|+++.|
T Consensus 129 cigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~S 207 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVS 207 (400)
T ss_pred EecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEe
Confidence 22111 22345678999999999999998887777999999999996 445566666666666678899999999
Q ss_pred eccChHHHH--HHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccc
Q 001758 177 ATADITKYR--DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1017)
Q Consensus 177 ATld~~~~~--~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1017)
||++.+.+. +.|- +.|+.+..-... .-++.+.. .+...+-+
T Consensus 208 ATlp~eilemt~kfm----tdpvrilvkrde----------ltlEgIKq-----------------------f~v~ve~E 250 (400)
T KOG0328|consen 208 ATLPHEILEMTEKFM----TDPVRILVKRDE----------LTLEGIKQ-----------------------FFVAVEKE 250 (400)
T ss_pred ccCcHHHHHHHHHhc----CCceeEEEecCC----------Cchhhhhh-----------------------heeeechh
Confidence 999765443 3332 234444322111 00111100 01111222
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEE
Q 001758 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1017)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVA 333 (1017)
.+..+.+.++...+. -.+.+|||+|+..+.-+.+.++. .++.|..+||.|++++|.++++.|+.+. +|+++
T Consensus 251 ewKfdtLcdLYd~Lt------ItQavIFcnTk~kVdwLtekm~~--~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 251 EWKFDTLCDLYDTLT------ITQAVIFCNTKRKVDWLTEKMRE--ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred hhhHhHHHHHhhhhe------hheEEEEecccchhhHHHHHHHh--hCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 233444444433332 24789999999999999999984 5589999999999999999999999999 99999
Q ss_pred cCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhcc
Q 001758 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (1017)
Q Consensus 334 TniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~~ 405 (1017)
|++-++|||+|.|..||+ ||.|.+.+.| .||+||.||. +.|.++.+...++...
T Consensus 323 TDVwaRGiDv~qVslviN--------YDLP~nre~Y----------IHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVIN--------YDLPNNRELY----------IHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred echhhccCCcceeEEEEe--------cCCCccHHHH----------hhhhccccccCCcceEEEEecHHHHHH
Confidence 999999999999999999 9999877655 9999999999 6899999999877654
No 44
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=283.34 Aligned_cols=316 Identities=19% Similarity=0.247 Sum_probs=223.0
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----------CCCcEEEeccHHHHHHHHHH---HHHhhc
Q 001758 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----------NMEPILCTQPRRFAVVAVAK---MVAKGR 92 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----------~~~~IivtqPrrlaa~s~a~---rva~e~ 92 (1017)
.-++++|.+.|...+.|++|+-.|-||||||.++...+++. |.+.+|++++ |.+|.|... +|....
T Consensus 90 v~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPT-RELA~QtFevL~kvgk~h 168 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPT-RELALQTFEVLNKVGKHH 168 (758)
T ss_pred ccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecch-HHHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999997766666654 2234555555 555555444 444444
Q ss_pred CCccCCeeeEe-eccccccCCCCcEEEECHHHHHHHHHhc-CCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCc
Q 001758 93 NCELGGEVGYH-IGHSKHLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1017)
Q Consensus 93 ~~~lg~~VGy~-v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~-~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~l 170 (1017)
+...|-.+|-. +.++...-..-+|+|||||+||+.|... .++..++.++|+|||+ |.+++.|--.+-..+-...+..
T Consensus 169 ~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~R 247 (758)
T KOG0343|consen 169 DFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKR 247 (758)
T ss_pred ccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhh
Confidence 44444444422 3344444457899999999999999865 3444599999999999 9999988766655555667778
Q ss_pred eEEEEeeccC--hHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCc
Q 001758 171 RVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (1017)
Q Consensus 171 klIlmSATld--~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (1017)
|.+++|||.. ...+.+.- +..+.-+.+...... ..+..+...|..
T Consensus 248 QTLLFSATqt~svkdLaRLs--L~dP~~vsvhe~a~~-------------------------atP~~L~Q~y~~------ 294 (758)
T KOG0343|consen 248 QTLLFSATQTKSVKDLARLS--LKDPVYVSVHENAVA-------------------------ATPSNLQQSYVI------ 294 (758)
T ss_pred eeeeeecccchhHHHHHHhh--cCCCcEEEEeccccc-------------------------cChhhhhheEEE------
Confidence 9999999963 33333321 111111222100000 000011111110
Q ss_pred cccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc
Q 001758 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (1017)
Q Consensus 249 ~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr 328 (1017)
.. ..+.| +.++.+..... ..++|||+.+..++..+++.+.++.+++.+..|||+|.+..|..++..|-..+
T Consensus 295 --v~----l~~Ki-~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 295 --VP----LEDKI-DMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred --Ee----hhhHH-HHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc
Confidence 01 11122 22333333333 46899999999999999999999889999999999999999999999998777
Q ss_pred -EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhh
Q 001758 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1017)
Q Consensus 329 -kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1017)
-|++||+++++|+|+|.|++||. ||-|..++.| +||+||+.|. ..|.++.+.++.+.
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ--------~DCPedv~tY----------IHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQ--------VDCPEDVDTY----------IHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEE--------ecCchhHHHH----------HHHhhhhhcccCCCceEEEEcchhH
Confidence 99999999999999999999999 9999887776 9999999999 67999999887653
No 45
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.3e-29 Score=268.88 Aligned_cols=315 Identities=23% Similarity=0.268 Sum_probs=221.6
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC-----cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME-----PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~-----~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
.+++|..++++|++|+++|-+|.||||||+.+...+++.... --+++.|+|.+|.++++.+.. +|..++-.+..
T Consensus 30 pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~a-lGk~l~lK~~v 108 (442)
T KOG0340|consen 30 PTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIA-LGKLLNLKVSV 108 (442)
T ss_pred CCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHH-hcccccceEEE
Confidence 468899999999999999999999999999998888865432 244555667777888887654 34344433333
Q ss_pred eecc------ccccCCCCcEEEECHHHHHHHHHhc----CCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceE
Q 001758 103 HIGH------SKHLSERSKIVFKTAGVLLDEMRDR----GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (1017)
Q Consensus 103 ~v~~------~~~~~~~t~Iiv~T~g~Ll~~l~~~----~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lkl 172 (1017)
-+++ ...+..+++++++|||.|-..+..+ ...+.++.++|+|||+ |.++.+|-..+--..-......+.
T Consensus 109 ivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~lP~~RQt 187 (442)
T KOG0340|consen 109 IVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECLPKPRQT 187 (442)
T ss_pred EEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhHHhhhhccCCCccce
Confidence 3333 3445788999999999999888754 1223489999999999 888887654433333333444599
Q ss_pred EEEeeccChHHHHHHHhhcCCC-ceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcccc
Q 001758 173 VLMSATADITKYRDYFRDLGRG-ERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1017)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~-~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1017)
+++|||+. +.+...++..... ...++...++. ...+.+...|...+
T Consensus 188 LlfSATit-d~i~ql~~~~i~k~~a~~~e~~~~v-------------------------stvetL~q~yI~~~------- 234 (442)
T KOG0340|consen 188 LLFSATIT-DTIKQLFGCPITKSIAFELEVIDGV-------------------------STVETLYQGYILVS------- 234 (442)
T ss_pred EEEEeehh-hHHHHhhcCCcccccceEEeccCCC-------------------------Cchhhhhhheeecc-------
Confidence 99999986 4556666532111 11111111110 00011111111110
Q ss_pred ccchhHHH-HHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-E
Q 001758 252 EIKPEVHK-LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (1017)
Q Consensus 252 ~~~~~~~~-li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-k 329 (1017)
..+.+ .+.+++..... + ..+.++||+++..+++.++..|+.+ ++++..+||.|++.+|...+..|+.+. +
T Consensus 235 ---~~vkdaYLv~~Lr~~~~-~--~~~simIFvnttr~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ 306 (442)
T KOG0340|consen 235 ---IDVKDAYLVHLLRDFEN-K--ENGSIMIFVNTTRECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFRSNAAR 306 (442)
T ss_pred ---hhhhHHHHHHHHhhhhh-c--cCceEEEEeehhHHHHHHHHHHhhh--ceeeeehhhcchHHHHHHHHHHHhhcCcc
Confidence 00111 11122222221 1 3689999999999999999999844 489999999999999999999999998 9
Q ss_pred EEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhh
Q 001758 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1017)
Q Consensus 330 VIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1017)
|+|||++|++|+|||.|..||| ||.|+....| .||.||+.|. +.|..+.++++.+.
T Consensus 307 iliaTDVAsRGLDIP~V~LVvN--------~diPr~P~~y----------iHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 307 ILIATDVASRGLDIPTVELVVN--------HDIPRDPKDY----------IHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred EEEEechhhcCCCCCceeEEEe--------cCCCCCHHHH----------HHhhcchhcccCCcceEEEechhhH
Confidence 9999999999999999999999 9999987776 9999999999 57999999986544
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=295.27 Aligned_cols=312 Identities=19% Similarity=0.229 Sum_probs=217.3
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHH----HhcC--CC----cEEEeccHHHHHHHHHHHHHh---hcC
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL----LAEN--ME----PILCTQPRRFAVVAVAKMVAK---GRN 93 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~l----le~~--~~----~IivtqPrrlaa~s~a~rva~---e~~ 93 (1017)
-.++.|.++++.|.+|++++|+||||||||.....++ ++.+ .. .++++.|-+.++..+-.++.. ++|
T Consensus 22 ~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G 101 (814)
T COG1201 22 SLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELG 101 (814)
T ss_pred CCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999995444433 3442 11 578888999999988887754 344
Q ss_pred CccCCeeeEeeccc--cccCCCCcEEEECHHHHHHHHHhcCC--CccCceEEEEecccc-----ccccccHHHHHHHHHH
Q 001758 94 CELGGEVGYHIGHS--KHLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHE-----RSVESDLVLVCVKQLL 164 (1017)
Q Consensus 94 ~~lg~~VGy~v~~~--~~~~~~t~Iiv~T~g~Ll~~l~~~~l--~l~~~~~IIIDEaHE-----R~~~~d~ll~~lk~ll 164 (1017)
.++....|.....+ ......++|+++|||.|.-++....+ .+.++.+|||||+|+ |+...-..+. ++.
T Consensus 102 ~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~Le---RL~ 178 (814)
T COG1201 102 IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLE---RLR 178 (814)
T ss_pred CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHH---HHH
Confidence 44422222221111 22355689999999999876654211 234999999999997 4444333333 333
Q ss_pred hcCCCceEEEEeecc-ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCC
Q 001758 165 LKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (1017)
Q Consensus 165 ~~~~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (1017)
..-+++|.|++|||. +++...+|+...+ .+++++.++... ...+++.....
T Consensus 179 ~l~~~~qRIGLSATV~~~~~varfL~g~~--~~~~Iv~~~~~k---~~~i~v~~p~~----------------------- 230 (814)
T COG1201 179 ELAGDFQRIGLSATVGPPEEVAKFLVGFG--DPCEIVDVSAAK---KLEIKVISPVE----------------------- 230 (814)
T ss_pred hhCcccEEEeehhccCCHHHHHHHhcCCC--CceEEEEcccCC---cceEEEEecCC-----------------------
Confidence 333489999999997 8899999997532 256776665432 22222211000
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHh
Q 001758 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (1017)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~ 323 (1017)
..... ........+.+.++ .+. ...+|||+||+..+|.++..|+.... ..+..+||+++.++|..+++.
T Consensus 231 -~~~~~-~~~~~~~~~~i~~~----v~~----~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~ 299 (814)
T COG1201 231 -DLIYD-EELWAALYERIAEL----VKK----HRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEER 299 (814)
T ss_pred -ccccc-cchhHHHHHHHHHH----Hhh----cCcEEEEEeChHHHHHHHHHHHHhcC-CceeeecccccHHHHHHHHHH
Confidence 00000 11111222222222 222 34899999999999999999986543 678999999999999999999
Q ss_pred ccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC----CCCcEEEEe
Q 001758 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT----CDGQVYRLV 398 (1017)
Q Consensus 324 f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~----~~G~c~rLy 398 (1017)
|+.|. |+||||+.+|-||||.+|+.||+ |..|.++..+ .||+||+|+. ..|..|...
T Consensus 300 lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~----------lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 300 LKEGELKAVVATSSLELGIDIGDIDLVIQ--------LGSPKSVNRF----------LQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HhcCCceEEEEccchhhccccCCceEEEE--------eCCcHHHHHH----------hHhccccccccCCcccEEEEecC
Confidence 99999 99999999999999999999999 8888866665 9999999987 345554443
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=1e-27 Score=298.99 Aligned_cols=301 Identities=15% Similarity=0.175 Sum_probs=207.0
Q ss_pred CCchHHHHHHHHHHHcC------CcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~------~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
...++.|.++++.+.++ .+.+++|+||||||..+...++.. ...+++++.|++.+|.|.++.+...+. ..+
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~-~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFA-NFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhc-cCC
Confidence 34689999999999875 689999999999996554444322 225789999999999999998877543 223
Q ss_pred CeeeEeecccc----------ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC
Q 001758 98 GEVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1017)
Q Consensus 98 ~~VGy~v~~~~----------~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~ 167 (1017)
..++...++.. ....+.+|+|+||..+ .+.+.+.++++|||||+|.-+ ......+....
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg------v~~~~~L~~~~ 597 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG------VKQKEKLKELR 597 (926)
T ss_pred cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc------hhHHHHHHhcC
Confidence 33332222211 1134689999999543 233456699999999999422 22223334446
Q ss_pred CCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 001758 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1017)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1017)
++.++++||||+.+..+....... . .+.++..+... ..++..++.+
T Consensus 598 ~~~~vL~~SATpiprtl~~~l~g~--~-d~s~I~~~p~~---R~~V~t~v~~---------------------------- 643 (926)
T TIGR00580 598 TSVDVLTLSATPIPRTLHMSMSGI--R-DLSIIATPPED---RLPVRTFVME---------------------------- 643 (926)
T ss_pred CCCCEEEEecCCCHHHHHHHHhcC--C-CcEEEecCCCC---ccceEEEEEe----------------------------
Confidence 678999999998776665443221 1 12232222211 1112211100
Q ss_pred ccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC
Q 001758 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1017)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1017)
. ....+.+. +...+. .+++++||+|+.++++.+++.|....+++.+..+||+|+.++|..+++.|+.|
T Consensus 644 ---~-~~~~i~~~---i~~el~-----~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G 711 (926)
T TIGR00580 644 ---Y-DPELVREA---IRRELL-----RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG 711 (926)
T ss_pred ---c-CHHHHHHH---HHHHHH-----cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC
Confidence 0 00011111 111121 14789999999999999999998765678999999999999999999999999
Q ss_pred c-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 328 r-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
+ +|||||+++|+|||||++++||. ++.+.. +-+++.||+||+||. ..|.||.++++.
T Consensus 712 k~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~~---------gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 712 EFQVLVCTTIIETGIDIPNANTIII--------ERADKF---------GLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCEEEECChhhcccccccCCEEEE--------ecCCCC---------CHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 8 99999999999999999999997 665431 234669999999999 689999999753
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=2.8e-27 Score=291.31 Aligned_cols=300 Identities=20% Similarity=0.231 Sum_probs=201.2
Q ss_pred CCchHHHHHHHHHHHcC------CcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~------~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
+.+++.|.++++.|.++ .+++++|+||||||..+...++.. ...+++++.|++.+|.|.++.+.+.+. .+|
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~-~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLE-PLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHh-hcC
Confidence 45899999999999876 489999999999996555444332 234688889999999999998877543 234
Q ss_pred CeeeEeecccc----------ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC
Q 001758 98 GEVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1017)
Q Consensus 98 ~~VGy~v~~~~----------~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~ 167 (1017)
..++...+... ......+|+|+|++.+.. ...+.++++|||||+|.-+ ......+....
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg------~~qr~~l~~~~ 407 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG------VEQRLALREKG 407 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh------HHHHHHHHhcC
Confidence 44554433322 123468999999987743 2335589999999999421 11222233344
Q ss_pred CCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 001758 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1017)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1017)
...++++||||+.+..+..-+. +......+...|.... ++...++
T Consensus 408 ~~~~iL~~SATp~prtl~~~~~--g~~~~s~i~~~p~~r~----~i~~~~~----------------------------- 452 (681)
T PRK10917 408 ENPHVLVMTATPIPRTLAMTAY--GDLDVSVIDELPPGRK----PITTVVI----------------------------- 452 (681)
T ss_pred CCCCEEEEeCCCCHHHHHHHHc--CCCceEEEecCCCCCC----CcEEEEe-----------------------------
Confidence 4678999999987665543321 1111111111221100 1111100
Q ss_pred ccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHH--------HHHHHHHHhcCCCCCcEEEEecCCCCHHHHHH
Q 001758 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY--------ALEQQWHLMKPLSSFFKVHILHSSVDTEQALM 319 (1017)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~--------~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~ 319 (1017)
.........+.+.+ .+ . .+++++||||..+ .++.+++.|.....++.+..+||+|+.++|..
T Consensus 453 --~~~~~~~~~~~i~~---~~-~----~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 453 --PDSRRDEVYERIRE---EI-A----KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred --CcccHHHHHHHHHH---HH-H----cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 00000111122211 11 1 1468999999643 45566777765444578999999999999999
Q ss_pred HHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEE
Q 001758 320 AMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (1017)
Q Consensus 320 i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rL 397 (1017)
+++.|+.|+ +|||||+++|+|||+|++++||. ||.+.. +-+++.||+||+||. .+|.||.+
T Consensus 523 i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 523 VMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAERF---------GLAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred HHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCCC---------CHHHHHHHhhcccCCCCceEEEEE
Confidence 999999998 99999999999999999999998 777641 235679999999999 58999999
Q ss_pred ec
Q 001758 398 VT 399 (1017)
Q Consensus 398 ys 399 (1017)
++
T Consensus 586 ~~ 587 (681)
T PRK10917 586 YK 587 (681)
T ss_pred EC
Confidence 86
No 49
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.2e-28 Score=276.47 Aligned_cols=313 Identities=20% Similarity=0.250 Sum_probs=223.4
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHh----cC-----------CCcEEEeccHHHHHHHHHHHHHhh
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA----EN-----------MEPILCTQPRRFAVVAVAKMVAKG 91 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle----~~-----------~~~IivtqPrrlaa~s~a~rva~e 91 (1017)
-.+++|+-.++.|.++++++++|+||||||..+...+++ .+ ...++++.|+|.+|.|+..+..+.
T Consensus 96 ~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh
Confidence 457889999999999999999999999999665555442 22 136888889999999998887775
Q ss_pred cCCc-cCCeeeEee---c-cccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEecccccccc-ccHHHHHHHHHHh
Q 001758 92 RNCE-LGGEVGYHI---G-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLLL 165 (1017)
Q Consensus 92 ~~~~-lg~~VGy~v---~-~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~-~d~ll~~lk~ll~ 165 (1017)
.+.. +-..+.|.- + .........+|+|+|||.|...+..+.+.+.++.++|+|||+ |.++ ..|...+-+.+..
T Consensus 176 ~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~ 254 (482)
T KOG0335|consen 176 SYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQ 254 (482)
T ss_pred cccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcc
Confidence 4322 112222321 1 112235679999999999999999888888899999999999 7777 7887777666654
Q ss_pred cC----CCceEEEEeeccC--hHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCcccccccc
Q 001758 166 KK----NDLRVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLR 239 (1017)
Q Consensus 166 ~~----~~lklIlmSATld--~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~ 239 (1017)
.. ...+-+++|||.+ ...+..+|-.-. ...+.+..+........ .++.++.+
T Consensus 255 ~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~-yi~laV~rvg~~~~ni~--q~i~~V~~------------------- 312 (482)
T KOG0335|consen 255 LGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN-YIFLAVGRVGSTSENIT--QKILFVNE------------------- 312 (482)
T ss_pred cCCCCccceeEEEEeccCChhhhhhHHHHhhcc-ceEEEEeeeccccccce--eEeeeecc-------------------
Confidence 32 3679999999974 334555553210 11122222211111000 01111000
Q ss_pred ccCCCCCCccccccchhHHHHHHHHHHHHHhhC------CCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCC
Q 001758 240 YCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNE------SDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVD 313 (1017)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~------~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~ 313 (1017)
.+...+++..+.... ......+||||.+++.+..+...|.. .++....+||..+
T Consensus 313 ------------------~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~--~~~~~~sIhg~~t 372 (482)
T KOG0335|consen 313 ------------------MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS--NGYPAKSIHGDRT 372 (482)
T ss_pred ------------------hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc--CCCCceeecchhh
Confidence 011112222222111 11123799999999999999999984 4588899999999
Q ss_pred HHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC-C
Q 001758 314 TEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-D 391 (1017)
Q Consensus 314 ~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~ 391 (1017)
+.+|.+.++.|+.|+ .|+|||||+++|+|||+|++||+ ||.|...+.| +||+||+||.+ .
T Consensus 373 q~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yDmP~d~d~Y----------vHRIGRTGR~Gn~ 434 (482)
T KOG0335|consen 373 QIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YDMPADIDDY----------VHRIGRTGRVGNG 434 (482)
T ss_pred hhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------eecCcchhhH----------HHhccccccCCCC
Confidence 999999999999999 99999999999999999999999 9999998877 99999999994 6
Q ss_pred CcEEEEech
Q 001758 392 GQVYRLVTK 400 (1017)
Q Consensus 392 G~c~rLys~ 400 (1017)
|....|++.
T Consensus 435 G~atsf~n~ 443 (482)
T KOG0335|consen 435 GRATSFFNE 443 (482)
T ss_pred ceeEEEecc
Confidence 999999983
No 50
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=263.02 Aligned_cols=314 Identities=21% Similarity=0.276 Sum_probs=225.8
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHH--HHHHHH--------hc-CCCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLL--------AE-NMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtq--ip~~ll--------e~-~~~~IivtqPrrlaa~s~a~rva~e~~~~ 95 (1017)
..+|+|.++.+.++.++++|.++.||+|||.. +|-++. +. ....+++..|+|.+|.++.-.+..+.-..
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng 321 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNG 321 (629)
T ss_pred CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcC
Confidence 35677899999999999999999999999944 333332 11 11257777888888888776666543221
Q ss_pred cCCeeeEe--ec--cccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCce
Q 001758 96 LGGEVGYH--IG--HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1017)
Q Consensus 96 lg~~VGy~--v~--~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lk 171 (1017)
+-...-|. -| ....+..+..|+++|||.|..+..++.+++..++++|+|||+ |+++..|-..+.|.++..+||.+
T Consensus 322 ~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 322 LKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred cceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcce
Confidence 11111121 11 123346788999999999999998888888899999999999 99999999999999999999999
Q ss_pred EEEEeeccCh--HHHH-HHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCc
Q 001758 172 VVLMSATADI--TKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (1017)
Q Consensus 172 lIlmSATld~--~~~~-~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (1017)
+++.|||-+. .++. .|... ++-+ ++..-.-.....|+- ..
T Consensus 401 tvmTSATWP~~VrrLa~sY~Ke-----p~~v-~vGsLdL~a~~sVkQ-------------------------------~i 443 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKE-----PMIV-YVGSLDLVAVKSVKQ-------------------------------NI 443 (629)
T ss_pred eeeecccCchHHHHHHHHhhhC-----ceEE-Eecccceeeeeeeee-------------------------------eE
Confidence 9999999753 2333 34332 2221 111100000000000 00
Q ss_pred cccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc
Q 001758 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (1017)
Q Consensus 249 ~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr 328 (1017)
-..-..+..+.+..++. .... ..++||||..+-.+..+..-+. ..++....+||+-.+.+|+..++.|++|.
T Consensus 444 -~v~~d~~k~~~~~~f~~----~ms~-ndKvIiFv~~K~~AD~LSSd~~--l~gi~~q~lHG~r~Q~DrE~al~~~ksG~ 515 (629)
T KOG0336|consen 444 -IVTTDSEKLEIVQFFVA----NMSS-NDKVIIFVSRKVMADHLSSDFC--LKGISSQSLHGNREQSDREMALEDFKSGE 515 (629)
T ss_pred -EecccHHHHHHHHHHHH----hcCC-CceEEEEEechhhhhhccchhh--hcccchhhccCChhhhhHHHHHHhhhcCc
Confidence 00001122233333332 2221 4589999999988888877665 45688889999999999999999999999
Q ss_pred -EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 329 -kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
+|+|||++|.+|+|+|+|++|++ ||.|.+++.| .||.||+||. +.|..+.+++..+..
T Consensus 516 vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIeeY----------VHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 516 VRILVATDLASRGLDVPDITHVYN--------YDFPRNIEEY----------VHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred eEEEEEechhhcCCCchhcceeec--------cCCCccHHHH----------HHHhcccccCCCCcceEEEEehhhHH
Confidence 99999999999999999999999 9999998877 9999999999 679999999987764
No 51
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.4e-28 Score=267.99 Aligned_cols=313 Identities=24% Similarity=0.288 Sum_probs=226.0
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc---------CCC-cEEEeccHHHHHHHHH---HHHHhhcC
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------NME-PILCTQPRRFAVVAVA---KMVAKGRN 93 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~---------~~~-~IivtqPrrlaa~s~a---~rva~e~~ 93 (1017)
-.+++|.++++....+++||=.|-||||||..+...++.+ +.+ ..+++.|+|.+|.|+. +++.+-.|
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg 324 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG 324 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 4577899999999999999999999999997666554422 112 3445566666666654 33333333
Q ss_pred CccCCeeeEe--eccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCce
Q 001758 94 CELGGEVGYH--IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1017)
Q Consensus 94 ~~lg~~VGy~--v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lk 171 (1017)
..+-...|-. ..+.+.+...+.|+|||||+|+.++.-+..++.+++++||||++ |+.+..|...+-.+.-..+|+.|
T Consensus 325 l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQ 403 (731)
T KOG0339|consen 325 LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQ 403 (731)
T ss_pred ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcce
Confidence 2211111111 01223345789999999999999988777788899999999999 99999999888777778899999
Q ss_pred EEEEeeccC--hHHHHHHHhhcCCCceeEEEEecCC--CcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 001758 172 VVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPST--NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1017)
Q Consensus 172 lIlmSATld--~~~~~~~f~~~~~~~~v~v~~~p~~--~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1017)
.|++|||.. .+++.+-|- + .+|.++..... +....-.|.+
T Consensus 404 tllFsaTf~~kIe~lard~L--~--dpVrvVqg~vgean~dITQ~V~V-------------------------------- 447 (731)
T KOG0339|consen 404 TLLFSATFKKKIEKLARDIL--S--DPVRVVQGEVGEANEDITQTVSV-------------------------------- 447 (731)
T ss_pred EEEeeccchHHHHHHHHHHh--c--CCeeEEEeehhccccchhheeee--------------------------------
Confidence 999999974 333333221 1 23333322111 0000000000
Q ss_pred ccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC
Q 001758 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1017)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1017)
.+.-...+.-++.++..... .|++|||+.-..+++++...|. ..++.|..+||.+.+.+|.+++..|+.+
T Consensus 448 ------~~s~~~Kl~wl~~~L~~f~S--~gkvlifVTKk~~~e~i~a~Lk--lk~~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 448 ------CPSEEKKLNWLLRHLVEFSS--EGKVLIFVTKKADAEEIAANLK--LKGFNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred ------ccCcHHHHHHHHHHhhhhcc--CCcEEEEEeccCCHHHHHHHhc--cccceeeeecCchhhHHHHHHHHHHhhc
Confidence 00011122234444444433 5899999999999999999998 4568999999999999999999999998
Q ss_pred c-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 328 r-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
+ .|+|+|+++.+|+|||+++.||+ ||.-..++.+ .||+||+||. ..|+.|.|+++.+.+
T Consensus 518 ~~~VlvatDvaargldI~~ikTVvn--------yD~ardIdth----------thrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 518 RKPVLVATDVAARGLDIPSIKTVVN--------YDFARDIDTH----------THRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred CCceEEEeeHhhcCCCccccceeec--------ccccchhHHH----------HHHhhhcccccccceeeEEechhhHH
Confidence 8 99999999999999999999999 9999988877 9999999999 469999999987654
No 52
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=2.2e-27 Score=272.77 Aligned_cols=297 Identities=20% Similarity=0.197 Sum_probs=188.1
Q ss_pred cEEEEcCCCCcHhHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEee------cc-----cc
Q 001758 44 VTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI------GH-----SK 108 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~lle~----~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v------~~-----~~ 108 (1017)
+++|+||||||||+++..+++.. ...+++++.|++.++.++++++...++..+|...|... .. +.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 58999999999998888777643 23589999999999999999999876654432211100 00 00
Q ss_pred ---------ccCCCCcEEEECHHHHHHHHHhcC----C--CccCceEEEEecccccccc-ccHHHHHHHHHHhcCCCceE
Q 001758 109 ---------HLSERSKIVFKTAGVLLDEMRDRG----L--NALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRV 172 (1017)
Q Consensus 109 ---------~~~~~t~Iiv~T~g~Ll~~l~~~~----l--~l~~~~~IIIDEaHER~~~-~d~ll~~lk~ll~~~~~lkl 172 (1017)
.......|+++||+.++..+.... . .....++|||||+|..... .+++..+++.+. ..+.++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~~ 158 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVPI 158 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCCE
Confidence 001246799999999988766411 0 1114589999999953321 233444444443 457899
Q ss_pred EEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccc
Q 001758 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (1017)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1017)
|+||||++ +.+.+++....... .....+.... ..+ . ...+.. ....
T Consensus 159 i~~SATlp-~~l~~~~~~~~~~~--~~~~~~~~~~-~~~--~----------------------~~~~~~------~~~~ 204 (358)
T TIGR01587 159 LLMSATLP-KFLKEYAEKIGYVE--FNEPLDLKEE-RRF--E----------------------RHRFIK------IESD 204 (358)
T ss_pred EEEecCch-HHHHHHHhcCCCcc--cccCCCCccc-ccc--c----------------------ccccee------eccc
Confidence 99999997 56677765432110 0000000000 000 0 000000 0000
Q ss_pred cchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHH----HHhccCCc
Q 001758 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMA----MKICKSHR 328 (1017)
Q Consensus 253 ~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i----~~~f~~gr 328 (1017)
. ......+.+++.... . ++++||||+++++++.+++.|........+..+||++++.+|..+ ++.|+.++
T Consensus 205 ~-~~~~~~l~~l~~~~~---~--~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~ 278 (358)
T TIGR01587 205 K-VGEISSLERLLEFIK---K--GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE 278 (358)
T ss_pred c-ccCHHHHHHHHHHhh---C--CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC
Confidence 0 001112222222111 1 469999999999999999999865555679999999999988664 77898888
Q ss_pred -EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC--C---CcEEEEechhh
Q 001758 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC--D---GQVYRLVTKSF 402 (1017)
Q Consensus 329 -kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~--~---G~c~rLys~~~ 402 (1017)
+|||||+++|+||||| +++||. |+. +..++.||+||+||.+ . |.+|.++...+
T Consensus 279 ~~ilvaT~~~~~GiDi~-~~~vi~--------~~~------------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 279 KFVIVATQVIEASLDIS-ADVMIT--------ELA------------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred CeEEEECcchhceeccC-CCEEEE--------cCC------------CHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 9999999999999996 677775 332 2356799999999973 2 37787776554
Q ss_pred h
Q 001758 403 F 403 (1017)
Q Consensus 403 ~ 403 (1017)
.
T Consensus 338 ~ 338 (358)
T TIGR01587 338 G 338 (358)
T ss_pred C
Confidence 3
No 53
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=279.84 Aligned_cols=349 Identities=18% Similarity=0.274 Sum_probs=217.3
Q ss_pred CCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 001758 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~ 99 (1017)
..++++.||.+++...+ ++++||++|||+|||......+++. ..++|+++.|++-++.|....... .+.+.. .
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~-~~~~~~-~ 135 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSI-YLIPYS-V 135 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhh-ccCccc-c
Confidence 47999999999999999 9999999999999997666665543 335899999999887766654443 222211 1
Q ss_pred eeEeeccc------cccCCCCcEEEECHHHHHHHHHhcCCC-ccCceEEEEeccccccccccHHHHHHHHHHhcCCCc-e
Q 001758 100 VGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLN-ALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL-R 171 (1017)
Q Consensus 100 VGy~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~-l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~l-k 171 (1017)
.|.. +.. .......+|+|+||++|.+.|.+.... +..++++|||||| |+......-.+++.++...... |
T Consensus 136 T~~l-~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354|consen 136 TGQL-GDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred eeec-cCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcccc
Confidence 1111 110 112346899999999999988865433 3589999999999 7766666666676666554333 9
Q ss_pred EEEEeecc--ChHHHHHHHhhcCCCceeEEEEec-------CCCcceeeeeEee------------hHHHHHHHhc---c
Q 001758 172 VVLMSATA--DITKYRDYFRDLGRGERVEVLAIP-------STNQRTIFQRRVS------------YLEQVTELLG---V 227 (1017)
Q Consensus 172 lIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~p-------~~~~~~~~~v~v~------------yl~~~~~~l~---~ 227 (1017)
||++|||+ +.+...++..++--. .++.... .......+++.+. +++.....+. .
T Consensus 214 ILgLTASpG~~~~~v~~~I~~L~as--ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 214 ILGLTASPGSKLEQVQNVIDNLCAS--LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred EEEEecCCCccHHHHHHHHHhhhee--cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 99999998 566777777664211 1110000 0000111122110 0000000000 0
Q ss_pred -----------------------------------------------CCCCc------------ccccccccc---CCC-
Q 001758 228 -----------------------------------------------DHGMT------------SELSSLRYC---SGP- 244 (1017)
Q Consensus 228 -----------------------------------------------~~~~~------------~~~~~~~~~---~~~- 244 (1017)
.++.. .+....+|. .+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 00000 000000000 000
Q ss_pred C-----------CCc-ccc-ccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC-CCCCcEEEEec-
Q 001758 245 S-----------PSM-ANA-EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILH- 309 (1017)
Q Consensus 245 ~-----------~~~-~~~-~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-~~~~~~v~~lH- 309 (1017)
. ..+ .+. ...+....+...++.+.. ..+ ..+++||+.+++.++.+...|.. ...+++...+-
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~-~~~--dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiG 448 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE-QNP--DSRTIIFVETRESALALKKWLLQLHELGIKAEIFIG 448 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh-cCC--CccEEEEEehHHHHHHHHHHHHhhhhcccccceeee
Confidence 0 000 000 001111122222222222 222 46899999999999999998873 22223333332
Q ss_pred -------CCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHH
Q 001758 310 -------SSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ 381 (1017)
Q Consensus 310 -------s~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~Q 381 (1017)
.+|++.+|.++++.|+.|+ +|||||+|+|+|+||+.|+.||- ||..++.... .|
T Consensus 449 q~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~snpIrm----------IQ 510 (746)
T KOG0354|consen 449 QGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSSNPIRM----------VQ 510 (746)
T ss_pred ccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCccHHHH----------HH
Confidence 3789999999999999999 99999999999999999999998 9988865555 99
Q ss_pred hcCCCCCCCCCcEEEEechh
Q 001758 382 RRGRTGRTCDGQVYRLVTKS 401 (1017)
Q Consensus 382 R~GRAGR~~~G~c~rLys~~ 401 (1017)
|+|| ||...|+|+.|++..
T Consensus 511 rrGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 511 RRGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred Hhcc-ccccCCeEEEEEcch
Confidence 9999 999999999999953
No 54
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.5e-27 Score=265.78 Aligned_cols=338 Identities=22% Similarity=0.270 Sum_probs=213.7
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC----C------C-cEEEeccHHHHHHHHHHHHHhhcCCc
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN----M------E-PILCTQPRRFAVVAVAKMVAKGRNCE 95 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~----~------~-~IivtqPrrlaa~s~a~rva~e~~~~ 95 (1017)
..+.+|.++|+.++++++++|.++||||||..+...+.+.. . + --+|+.|+|.+|.|+++-+.......
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~ 238 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPF 238 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCc
Confidence 46788999999999999999999999999955554443221 1 1 25667788888999998887765432
Q ss_pred cCCeeeEeecccccc------CCCCcEEEECHHHHHHHHHh-cCCCccCceEEEEeccccccccccHHHHH---HHHHHh
Q 001758 96 LGGEVGYHIGHSKHL------SERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESDLVLVC---VKQLLL 165 (1017)
Q Consensus 96 lg~~VGy~v~~~~~~------~~~t~Iiv~T~g~Ll~~l~~-~~l~l~~~~~IIIDEaHER~~~~d~ll~~---lk~ll~ 165 (1017)
-=..-|+-++.+++. ..+.+|+++|||+|++.+.+ ..+.+.++.+||+||++ |.++..|-..+ ++.+-.
T Consensus 239 hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 239 HWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVHS 317 (708)
T ss_pred eEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHHhh
Confidence 112234555565544 45678999999999999885 34555689999999999 77777664333 333311
Q ss_pred ----cC------CCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCC----
Q 001758 166 ----KK------NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGM---- 231 (1017)
Q Consensus 166 ----~~------~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~---- 231 (1017)
.. +.++-+++|||+. +...+.-+ +.-..++.+- .+... ....| +.. ....++.+.
T Consensus 318 ~~~~e~~~~~lp~q~q~mLlSATLt-d~V~rLa~-~sLkDpv~I~-ld~s~-~~~~p-~~~------a~~ev~~~~~~~~ 386 (708)
T KOG0348|consen 318 IQNAECKDPKLPHQLQNMLLSATLT-DGVNRLAD-LSLKDPVYIS-LDKSH-SQLNP-KDK------AVQEVDDGPAGDK 386 (708)
T ss_pred ccchhcccccccHHHHhHhhhhhhH-HHHHHHhh-ccccCceeee-ccchh-hhcCc-chh------hhhhcCCcccccc
Confidence 11 1357789999985 22333222 1112233222 11100 00000 000 000011100
Q ss_pred -----ccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC--------
Q 001758 232 -----TSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------- 298 (1017)
Q Consensus 232 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-------- 298 (1017)
-++.+...|...|. .-. .-.+..++........ ..+++||+.+.+.++.-++++..
T Consensus 387 l~~~~iPeqL~qry~vVPp--------KLR-LV~Laa~L~~~~k~~~--~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 387 LDSFAIPEQLLQRYTVVPP--------KLR-LVALAALLLNKVKFEE--KQKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred cccccCcHHhhhceEecCC--------chh-HHHHHHHHHHHhhhhh--hceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 00111111111110 001 1122234444444444 34899999999999877666541
Q ss_pred ------------CCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCC
Q 001758 299 ------------LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (1017)
Q Consensus 299 ------------~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~ 365 (1017)
...+.+++-|||+|++++|..+++.|...+ -|++|||||++|+|+|+|.+||. ||+|.
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~- 526 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPF- 526 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCCCC-
Confidence 012357889999999999999999998877 99999999999999999999999 99987
Q ss_pred ccccceeecCHhhHHHhcCCCCCC-CCCcEEEEec--hhhhcc
Q 001758 366 IDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT--KSFFGT 405 (1017)
Q Consensus 366 ~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys--~~~~~~ 405 (1017)
|.++|+||+||+.|. ..|....+.. +.+|..
T Consensus 527 ---------s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 527 ---------STADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred ---------CHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 667779999999998 4677655544 445543
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=9.4e-27 Score=284.81 Aligned_cols=299 Identities=21% Similarity=0.256 Sum_probs=197.3
Q ss_pred CCchHHHHHHHHHHHcC------CcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~------~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
..+++.|.++++.|..+ .+.+++|+||||||..+...++.. ....++++.|++.+|.|+++.+.+.+. .+|
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~-~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLA-PLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhc-ccC
Confidence 34789999999999865 268999999999997655444332 234788999999999999998876543 233
Q ss_pred CeeeEeeccc----------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC
Q 001758 98 GEVGYHIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1017)
Q Consensus 98 ~~VGy~v~~~----------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~ 167 (1017)
..++...+.. .....+.+|+|+|++.+.. .+.+.++++|||||+|.-+. +.. ..+....
T Consensus 313 i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~--~qr----~~l~~~~ 381 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV--EQR----KKLREKG 381 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH--HHH----HHHHHhc
Confidence 3444332221 1123467999999998753 23455899999999994221 111 1122222
Q ss_pred C---CceEEEEeeccChHHHHHHH-hhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCC
Q 001758 168 N---DLRVVLMSATADITKYRDYF-RDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (1017)
Q Consensus 168 ~---~lklIlmSATld~~~~~~~f-~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (1017)
. +.++++||||+.+..+..-. +.+ ....+...|... .++...++.
T Consensus 382 ~~~~~~~~l~~SATp~prtl~l~~~~~l---~~~~i~~~p~~r----~~i~~~~~~------------------------ 430 (630)
T TIGR00643 382 QGGFTPHVLVMSATPIPRTLALTVYGDL---DTSIIDELPPGR----KPITTVLIK------------------------ 430 (630)
T ss_pred ccCCCCCEEEEeCCCCcHHHHHHhcCCc---ceeeeccCCCCC----CceEEEEeC------------------------
Confidence 2 67899999998665544322 211 111111111110 011111000
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCH--------HHHHHHHHHhcCCCCCcEEEEecCCCCHH
Q 001758 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTY--------YALEQQWHLMKPLSSFFKVHILHSSVDTE 315 (1017)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~--------~~ie~l~~~L~~~~~~~~v~~lHs~l~~~ 315 (1017)
........+.+ ...+. .+++++||||.. ..++.+++.|.....++.+..+||+|+.+
T Consensus 431 -------~~~~~~~~~~i---~~~l~-----~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~ 495 (630)
T TIGR00643 431 -------HDEKDIVYEFI---EEEIA-----KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSD 495 (630)
T ss_pred -------cchHHHHHHHH---HHHHH-----hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHH
Confidence 00001111111 11111 146899999976 34566777776544668899999999999
Q ss_pred HHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCc
Q 001758 316 QALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (1017)
Q Consensus 316 er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~ 393 (1017)
+|..+++.|+.|+ +|||||+++|+|||+|++++||. ||.+.. +-+++.||+||+||. .+|.
T Consensus 496 eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 496 EKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAERF---------GLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred HHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCCcC---------CHHHHHHHhhhcccCCCCcE
Confidence 9999999999988 99999999999999999999997 776641 345679999999998 5899
Q ss_pred EEEEec
Q 001758 394 VYRLVT 399 (1017)
Q Consensus 394 c~rLys 399 (1017)
||.++.
T Consensus 559 ~il~~~ 564 (630)
T TIGR00643 559 CLLVYK 564 (630)
T ss_pred EEEEEC
Confidence 999984
No 56
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.8e-27 Score=254.27 Aligned_cols=316 Identities=19% Similarity=0.240 Sum_probs=230.3
Q ss_pred chHHHHHHHHHHHcC--CcEEEEcCCCCcHhHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 001758 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~--~~vII~apTGSGKTtqip~~lle~~~-----~~IivtqPrrlaa~s~a~rva~e~~~~lg~~V 100 (1017)
.+.+|+.+++.++.+ +++|..+..|+|||+.+..-+|..-. ...+|+.|.|.+|.+.-+-+ +++|...+-..
T Consensus 113 PskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita 191 (477)
T KOG0332|consen 113 PSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTA 191 (477)
T ss_pred cchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeE
Confidence 356799999998865 79999999999999988888775432 36788899999998877654 66776666778
Q ss_pred eEeeccccccCC---CCcEEEECHHHHHHHHHh-cCCCccCceEEEEecccccccccc-HHHHHHHHHHhcCCCceEEEE
Q 001758 101 GYHIGHSKHLSE---RSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 101 Gy~v~~~~~~~~---~t~Iiv~T~g~Ll~~l~~-~~l~l~~~~~IIIDEaHER~~~~d-~ll~~lk~ll~~~~~lklIlm 175 (1017)
.|.++......+ ..+|++.|||.++.++.. ..+.+..+.++|+|||+ -+++++ |...-++......++.++|++
T Consensus 192 ~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLF 270 (477)
T KOG0332|consen 192 SYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLF 270 (477)
T ss_pred EEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEee
Confidence 888887644332 468999999999999886 55556699999999999 444443 333344444444568999999
Q ss_pred eeccChHHHHHHHhhcC-CCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccc
Q 001758 176 SATADITKYRDYFRDLG-RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1017)
Q Consensus 176 SATld~~~~~~~f~~~~-~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1017)
|||.+ +....|-..+- ...++.+.... -..++++.+| ..-.-.
T Consensus 271 SATf~-e~V~~Fa~kivpn~n~i~Lk~ee----l~L~~IkQly-------------------------------v~C~~~ 314 (477)
T KOG0332|consen 271 SATFV-EKVAAFALKIVPNANVIILKREE----LALDNIKQLY-------------------------------VLCACR 314 (477)
T ss_pred echhH-HHHHHHHHHhcCCCceeeeehhh----ccccchhhhe-------------------------------eeccch
Confidence 99975 44555544321 11112111110 1122222222 111222
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEE
Q 001758 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1017)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVA 333 (1017)
.+.++.+.++.-.+. -|+.+|||.|+..+..++..|.. .+..|..+||.|..++|..+++.|+.|+ ||+|+
T Consensus 315 ~~K~~~l~~lyg~~t------igqsiIFc~tk~ta~~l~~~m~~--~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLit 386 (477)
T KOG0332|consen 315 DDKYQALVNLYGLLT------IGQSIIFCHTKATAMWLYEEMRA--EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLIT 386 (477)
T ss_pred hhHHHHHHHHHhhhh------hhheEEEEeehhhHHHHHHHHHh--cCceeEEeeccchhHHHHHHHHHHhcCcceEEEE
Confidence 334445545332221 36889999999999999999985 4578999999999999999999999999 99999
Q ss_pred cCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 334 TniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
||+.++|||++.|.+||+ ||.|.....- -.-+.|+||+||+||. +.|.+|.|....
T Consensus 387 TnV~ARGiDv~qVs~VvN--------ydlP~~~~~~----pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 387 TNVCARGIDVAQVSVVVN--------YDLPVKYTGE----PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred echhhcccccceEEEEEe--------cCCccccCCC----CCHHHHHHHhcccccccccceEEEeeccc
Confidence 999999999999999999 9988765433 3457789999999999 679999988753
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.95 E-value=9.6e-27 Score=296.15 Aligned_cols=300 Identities=15% Similarity=0.183 Sum_probs=203.1
Q ss_pred CCchHHHHHHHHHHHcC------CcEEEEcCCCCcHhHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~------~~vII~apTGSGKTtqip~~l--le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
+..++.|.++++.+..+ .+++++|+||+|||.++...+ .-.....++++.|++.+|.|+++.+...++. .+
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN-WP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc-CC
Confidence 45889999999999886 799999999999995443222 2122357889999999999999988764432 22
Q ss_pred CeeeEeecccc----------ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC
Q 001758 98 GEVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1017)
Q Consensus 98 ~~VGy~v~~~~----------~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~ 167 (1017)
..++...++.. ......+|+|+||+.+. ..+.+.++++|||||+|.-+ ......+...+
T Consensus 678 v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG------~~~~e~lk~l~ 746 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG------VRHKERIKAMR 746 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc------hhHHHHHHhcC
Confidence 22332222211 11246799999997542 23345589999999999421 11223344456
Q ss_pred CCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 001758 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1017)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1017)
++.++++||||+.+..+......+. . ..++..+.... .+++..+.
T Consensus 747 ~~~qvLl~SATpiprtl~l~~~gl~--d-~~~I~~~p~~r---~~v~~~~~----------------------------- 791 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNMAMSGMR--D-LSIIATPPARR---LAVKTFVR----------------------------- 791 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHHHHhhCC--C-cEEEecCCCCC---CCceEEEE-----------------------------
Confidence 7889999999987665543332221 1 22322222110 11111100
Q ss_pred ccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC
Q 001758 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1017)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1017)
....... ...++..+.. +++++||+|+.+.++.+++.|....++..+..+||+|+.++|.+++..|++|
T Consensus 792 ---~~~~~~~---k~~il~el~r-----~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G 860 (1147)
T PRK10689 792 ---EYDSLVV---REAILREILR-----GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 860 (1147)
T ss_pred ---ecCcHHH---HHHHHHHHhc-----CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc
Confidence 0000001 1122222221 4789999999999999999998766678899999999999999999999999
Q ss_pred c-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEech
Q 001758 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (1017)
Q Consensus 328 r-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~ 400 (1017)
+ +|||||+++|+|||||++++||. ++... + +-+++.||+||+||. ..|.||.++..
T Consensus 861 k~~VLVaTdIierGIDIP~v~~VIi--------~~ad~----f-----glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 861 RFNVLVCTTIIETGIDIPTANTIII--------ERADH----F-----GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCEEEECchhhcccccccCCEEEE--------ecCCC----C-----CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 8 99999999999999999999994 22211 1 235679999999999 68999988864
No 58
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=9e-28 Score=268.20 Aligned_cols=325 Identities=20% Similarity=0.242 Sum_probs=213.4
Q ss_pred chHHHHHHHHHHHcC-CcEEEEcCCCCcHhHHHHHHHHhcC----------------CCc--EEEeccHHHHHHHHHHHH
Q 001758 28 VMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAEN----------------MEP--ILCTQPRRFAVVAVAKMV 88 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~-~~vII~apTGSGKTtqip~~lle~~----------------~~~--IivtqPrrlaa~s~a~rv 88 (1017)
.+++|...++++..+ .+++-.|+||||||.++-..+++.. ..+ -+|+.|+|.+|.|+.+.+
T Consensus 204 Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl 283 (731)
T KOG0347|consen 204 PTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHL 283 (731)
T ss_pred CccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHH
Confidence 456788888887777 7999999999999977666665510 112 456667777777777765
Q ss_pred Hh---hcCCccCCeeeEe-e-ccccccCCCCcEEEECHHHHHHHHHhcCC---CccCceEEEEeccccccccccH---HH
Q 001758 89 AK---GRNCELGGEVGYH-I-GHSKHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDL---VL 157 (1017)
Q Consensus 89 a~---e~~~~lg~~VGy~-v-~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l---~l~~~~~IIIDEaHER~~~~d~---ll 157 (1017)
.. ..+..+...+|-. + .++..++..++|+|+|||+|..++..+.. .+.++.++||||++ |++.... +-
T Consensus 284 ~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els 362 (731)
T KOG0347|consen 284 KAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELS 362 (731)
T ss_pred HHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHHH
Confidence 44 3333333334421 1 23444567899999999999999876433 23489999999999 7776644 33
Q ss_pred HHHHHHH--hcCCCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCcccc
Q 001758 158 VCVKQLL--LKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSEL 235 (1017)
Q Consensus 158 ~~lk~ll--~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~ 235 (1017)
.+|+.+. ..++..|.+++|||++.......-.... ... . ...+ ..-++.....+++..
T Consensus 363 ~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k----~~~-----k--~~~~---~~kiq~Lmk~ig~~~------ 422 (731)
T KOG0347|consen 363 KLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRK----KKD-----K--EDEL---NAKIQHLMKKIGFRG------ 422 (731)
T ss_pred HHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhh----ccc-----h--hhhh---hHHHHHHHHHhCccC------
Confidence 4455554 2345679999999986433222211100 000 0 0000 001111222222111
Q ss_pred ccccccCCCCCCccccccchhHHHHHHHHHHHHHhhC---------CCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEE
Q 001758 236 SSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNE---------SDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVH 306 (1017)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~---------~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~ 306 (1017)
.+...+..........+.+...+....+ ...+|++|||||+.+.+.++.-+|... ++..+
T Consensus 423 ---------kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L--~i~p~ 491 (731)
T KOG0347|consen 423 ---------KPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL--DIPPL 491 (731)
T ss_pred ---------CCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc--CCCCc
Confidence 0111111111122121111111110000 112689999999999999999999854 47789
Q ss_pred EecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCC
Q 001758 307 ILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 385 (1017)
Q Consensus 307 ~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GR 385 (1017)
+||+.|.+.+|.+.++.|+... -|+|||++|++|+|||+|.+||+ |..|...+.| .||.||
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------YqVPrtseiY----------VHRSGR 553 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQVPRTSEIY----------VHRSGR 553 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------eecCCcccee----------Eecccc
Confidence 9999999999999999998877 99999999999999999999999 9999988877 999999
Q ss_pred CCCC-CCCcEEEEechhh
Q 001758 386 TGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 386 AGR~-~~G~c~rLys~~~ 402 (1017)
+.|. ..|+...|+.+.+
T Consensus 554 TARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 554 TARANSEGVSVMLCGPQE 571 (731)
T ss_pred cccccCCCeEEEEeChHH
Confidence 9999 6899999998653
No 59
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=4.9e-26 Score=276.59 Aligned_cols=329 Identities=16% Similarity=0.145 Sum_probs=194.1
Q ss_pred CchHHHHHHHHHHHcCC-cEEEEcCCCCcHhHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhcCCcc----
Q 001758 27 PVMSLREKIVEKVLENR-VTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCEL---- 96 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~-~vII~apTGSGKTtqip~~lle~-----~~~~IivtqPrrlaa~s~a~rva~e~~~~l---- 96 (1017)
..+++|.++++.+.+++ ++++.+|||||||..+..+++.. ..++++++.|+|.+|.|+++.+..... .+
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k-~l~~~~ 93 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGE-RLPDVP 93 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHH-Hhcccc
Confidence 38999999999999998 67778999999997665555422 123788899999999988776654221 11
Q ss_pred -------------------CCeeeEeeccc------cccCCCCcEEEECHHHHHHHHHh---------cCCC---ccCce
Q 001758 97 -------------------GGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRD---------RGLN---ALKYK 139 (1017)
Q Consensus 97 -------------------g~~VGy~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~---------~~l~---l~~~~ 139 (1017)
+-.+...++.. ......++|+|+|++++.+.... .++. +.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~ 173 (844)
T TIGR02621 94 EVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDA 173 (844)
T ss_pred hhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccce
Confidence 01122112221 22345679999997666543321 0111 34799
Q ss_pred EEEEeccccccccccHHHHHHHHHHh--cCC---CceEEEEeeccChHH--HHHHHhhcCCCceeEEEEecCCCcceeee
Q 001758 140 VIILDEVHERSVESDLVLVCVKQLLL--KKN---DLRVVLMSATADITK--YRDYFRDLGRGERVEVLAIPSTNQRTIFQ 212 (1017)
Q Consensus 140 ~IIIDEaHER~~~~d~ll~~lk~ll~--~~~---~lklIlmSATld~~~--~~~~f~~~~~~~~v~v~~~p~~~~~~~~~ 212 (1017)
+||||||| ++..|...+.+.+.. +.+ +.|+++||||++.+. +...+.. ....+++.. . +...
T Consensus 174 ~LVLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~--~p~~i~V~~--~----~l~a 242 (844)
T TIGR02621 174 LIVHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA--EDYKHPVLK--K----RLAA 242 (844)
T ss_pred EEEEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc--CCceeeccc--c----cccc
Confidence 99999999 444444433333221 122 369999999996442 2222211 111111100 0 0000
Q ss_pred eEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHH
Q 001758 213 RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQ 292 (1017)
Q Consensus 213 v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l 292 (1017)
..+ ..+... .........+.. +..+... .++++||||||++.++.+
T Consensus 243 ~ki----------------------~q~v~v--------~~e~Kl~~lv~~-L~~ll~e---~g~~vLVF~NTv~~Aq~L 288 (844)
T TIGR02621 243 KKI----------------------VKLVPP--------SDEKFLSTMVKE-LNLLMKD---SGGAILVFCRTVKHVRKV 288 (844)
T ss_pred cce----------------------EEEEec--------ChHHHHHHHHHH-HHHHHhh---CCCcEEEEECCHHHHHHH
Confidence 000 000000 000011112222 2222221 147899999999999999
Q ss_pred HHHhcCCCCCcEEEEecCCCCHHHHH-----HHHHhccC----C--------cEEEEEcCcccccccCCCeeEEEeCCcc
Q 001758 293 WHLMKPLSSFFKVHILHSSVDTEQAL-----MAMKICKS----H--------RKVILATNIAESSVTIPKVAYVIDSCRS 355 (1017)
Q Consensus 293 ~~~L~~~~~~~~v~~lHs~l~~~er~-----~i~~~f~~----g--------rkVIVATniaetGIdIP~V~~VId~G~~ 355 (1017)
++.|.... + ..+||+|++.+|. .+++.|++ + .+|||||+++|+||||+. ++||.
T Consensus 289 ~~~L~~~g--~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~---- 359 (844)
T TIGR02621 289 FAKLPKEK--F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC---- 359 (844)
T ss_pred HHHHHhcC--C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE----
Confidence 99998533 3 8899999999999 67788865 2 379999999999999987 67774
Q ss_pred ceeeecCCCCccccceeecCHhhHHHhcCCCCCCCC--CcEEEEechhhhccc-cccCCchhhhccHHHHHHHH
Q 001758 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD--GQVYRLVTKSFFGTL-EDHECPAILRLSLRLQVLLI 426 (1017)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~--G~c~rLys~~~~~~l-~~~~~PEI~r~~L~~~vL~l 426 (1017)
+..+ ..+|.||+||+||.+. |..+.+++.+.-..- ...-.||+++..+..+.+..
T Consensus 360 ----d~aP------------~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~ 417 (844)
T TIGR02621 360 ----DLAP------------FESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQ 417 (844)
T ss_pred ----CCCC------------HHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 3322 2567999999999843 333444433211111 11224678877665554443
No 60
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.7e-26 Score=270.23 Aligned_cols=307 Identities=20% Similarity=0.194 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCcHh--HHHHHHHHhcCCCcEEEeccHHHHH-HHHHHHHHhhcCCccCCeeeEeecc
Q 001758 30 SLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAV-VAVAKMVAKGRNCELGGEVGYHIGH 106 (1017)
Q Consensus 30 ~~Q~eil~ai~~~~~vII~apTGSGKT--tqip~~lle~~~~~IivtqPrrlaa-~s~a~rva~e~~~~lg~~VGy~v~~ 106 (1017)
+-|.++++++.+++++++..|||.||| +|+|..+++ +..+|+.|--.+- .|+..-.+ .|....-.-+-....
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~---G~TLVVSPLiSLM~DQV~~l~~--~Gi~A~~lnS~l~~~ 94 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE---GLTLVVSPLISLMKDQVDQLEA--AGIRAAYLNSTLSRE 94 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC---CCEEEECchHHHHHHHHHHHHH--cCceeehhhcccCHH
Confidence 448999999999999999999999999 899998883 3556666644333 33333221 221111000000011
Q ss_pred c------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccc-cccHHHHH--HHHHHhcCCCceEEEEee
Q 001758 107 S------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSV-ESDLVLVC--VKQLLLKKNDLRVVLMSA 177 (1017)
Q Consensus 107 ~------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~-~~d~ll~~--lk~ll~~~~~lklIlmSA 177 (1017)
+ .......+++|.+|++|...-..+.+....+++++|||||.-+- ..||...+ +..+....++++++.+||
T Consensus 95 e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTA 174 (590)
T COG0514 95 ERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTA 174 (590)
T ss_pred HHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeC
Confidence 1 11234579999999999765332222234899999999997543 34676655 345566678999999999
Q ss_pred ccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhH
Q 001758 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1017)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1017)
|.+.....+....++-..+..+..-..++ +..|.+. .. . ..
T Consensus 175 TA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~-----------------------------~~------~---~~ 215 (590)
T COG0514 175 TATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVV-----------------------------EK------G---EP 215 (590)
T ss_pred CCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhh-----------------------------hc------c---cH
Confidence 99988777777765544332222111110 0000000 00 0 00
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATni 336 (1017)
.. ++. .+........++.||||.|+..++.+++.|... ++.+..+||||+.++|..+.+.|..+. +|||||+.
T Consensus 216 ~~---q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~A 289 (590)
T COG0514 216 SD---QLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNA 289 (590)
T ss_pred HH---HHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Confidence 00 111 111111222567899999999999999999954 689999999999999999999999888 99999999
Q ss_pred ccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 337 aetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
.++|||.|||++||+ ||.|.++++| +|-.|||||. .|..|+.||++.+..
T Consensus 290 FGMGIdKpdVRfViH--------~~lP~s~EsY----------yQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 290 FGMGIDKPDVRFVIH--------YDLPGSIESY----------YQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred ccCccCCCCceEEEE--------ecCCCCHHHH----------HHHHhhccCCCCcceEEEeeccccHH
Confidence 999999999999999 9999977666 9999999999 689999999987754
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=1.9e-26 Score=294.60 Aligned_cols=304 Identities=21% Similarity=0.248 Sum_probs=187.9
Q ss_pred EEcCCCCcHhHHHHHHHH----hcC-----------CCcEEEeccHHHHHHHHHHHHHhh----------cC-CccCCee
Q 001758 47 IVGETGCGKSSQVPQFLL----AEN-----------MEPILCTQPRRFAVVAVAKMVAKG----------RN-CELGGEV 100 (1017)
Q Consensus 47 I~apTGSGKTtqip~~ll----e~~-----------~~~IivtqPrrlaa~s~a~rva~e----------~~-~~lg~~V 100 (1017)
|++|||||||..+...++ ... ..+++++.|.+.++.++.+.+... ++ ..++..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999965544332 211 236888899999999888876431 11 1234445
Q ss_pred eEeecccc------ccCCCCcEEEECHHHHHHHHHhcC-CCccCceEEEEecccccccccc---HHHHHHHHHHhc-CCC
Q 001758 101 GYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESD---LVLVCVKQLLLK-KND 169 (1017)
Q Consensus 101 Gy~v~~~~------~~~~~t~Iiv~T~g~Ll~~l~~~~-l~l~~~~~IIIDEaHER~~~~d---~ll~~lk~ll~~-~~~ 169 (1017)
+...+... .....++|+|+|||.|..++.++. ..+.++++|||||+|+- .+.+ .+...+.++... ..+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L-~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAV-AGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHh-cccccccHHHHHHHHHHHhCCCC
Confidence 54433211 223568999999999988765432 23559999999999953 3332 122334444333 356
Q ss_pred ceEEEEeecc-ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEee-hHHHHHHHhccCCCCccccccccccCCCCCC
Q 001758 170 LRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVS-YLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1017)
Q Consensus 170 lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~-yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1017)
.|+|++|||+ +.+.+.+|+.. ..++.++..+.. +..++++. ..++..+... .... .. .....
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g---~~pv~Iv~~~~~---r~~~l~v~vp~~d~~~~~~----~~~~-----~~-~~~~~ 223 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGG---DRPVTVVNPPAM---RHPQIRIVVPVANMDDVSS----VASG-----TG-EDSHA 223 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcC---CCCEEEECCCCC---cccceEEEEecCchhhccc----cccc-----cc-cccch
Confidence 8999999998 67888888863 234555432221 11122211 1111000000 0000 00 00000
Q ss_pred ccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCC--------------------------
Q 001758 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------- 301 (1017)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~-------------------------- 301 (1017)
.....+.+.+.. .++..+. . .+++|||+||++.++.++..|+....
T Consensus 224 ~r~~~i~~~v~~---~il~~i~---~--~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1490)
T PRK09751 224 GREGSIWPYIET---GILDEVL---R--HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNR 295 (1490)
T ss_pred hhhhhhhHHHHH---HHHHHHh---c--CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhc
Confidence 000011111111 1222221 1 36899999999999999988864311
Q ss_pred -----CcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecC
Q 001758 302 -----FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVS 375 (1017)
Q Consensus 302 -----~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iS 375 (1017)
...+..|||+|++++|..+++.|++|+ ++||||+++|.||||++|++||+ |+.|. |
T Consensus 296 ~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~gsP~----------s 357 (1490)
T PRK09751 296 VQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------VATPL----------S 357 (1490)
T ss_pred cccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------eCCCC----------C
Confidence 123678999999999999999999999 99999999999999999999999 77654 6
Q ss_pred HhhHHHhcCCCCCCCCCc
Q 001758 376 QSQAEQRRGRTGRTCDGQ 393 (1017)
Q Consensus 376 kasa~QR~GRAGR~~~G~ 393 (1017)
.++|+||+|||||...|.
T Consensus 358 Vas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 358 VASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred HHHHHHHhCCCCCCCCCc
Confidence 677799999999984333
No 62
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=265.47 Aligned_cols=449 Identities=16% Similarity=0.153 Sum_probs=270.0
Q ss_pred chHHHHHHHHHHH-cCCcEEEEcCCCCcHhHHHHHHHHhcC------------CCcEEEeccHHHHHHHHHHHHHhhcCC
Q 001758 28 VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1017)
Q Consensus 28 i~~~Q~eil~ai~-~~~~vII~apTGSGKTtqip~~lle~~------------~~~IivtqPrrlaa~s~a~rva~e~~~ 94 (1017)
+..+|.++.+... .+.|.|||||||||||-.+.+-++..- .-+|+++.|.+.+|..+++.+.+.++
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~- 189 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA- 189 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-
Confidence 4567888888765 678999999999999955444443211 12899999999999999998888665
Q ss_pred ccCCeeeEeeccccc---cCCCCcEEEECHHHHHHHHHh--cCCC-ccCceEEEEecccc----ccccccHHHHHHH-HH
Q 001758 95 ELGGEVGYHIGHSKH---LSERSKIVFKTAGVLLDEMRD--RGLN-ALKYKVIILDEVHE----RSVESDLVLVCVK-QL 163 (1017)
Q Consensus 95 ~lg~~VGy~v~~~~~---~~~~t~Iiv~T~g~Ll~~l~~--~~l~-l~~~~~IIIDEaHE----R~~~~d~ll~~lk-~l 163 (1017)
.+|..|+--.+.... .-.+++|+|+||+.+.-..+. +... ...+.+|||||+|- |+.-.+.+..-.. .+
T Consensus 190 ~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~v 269 (1230)
T KOG0952|consen 190 PLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLV 269 (1230)
T ss_pred cccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHH
Confidence 445555433222211 135799999999988533221 1111 23899999999992 4433333333222 22
Q ss_pred HhcCCCceEEEEeecc-ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccC
Q 001758 164 LLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (1017)
Q Consensus 164 l~~~~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (1017)
-.....+|+|++|||+ |.+.++.|++.. ....+++ ....|..-..+ ....-.+ .
T Consensus 270 essqs~IRivgLSATlPN~eDvA~fL~vn---~~~glfs-----------Fd~~yRPvpL~---------~~~iG~k--~ 324 (1230)
T KOG0952|consen 270 ESSQSMIRIVGLSATLPNYEDVARFLRVN---PYAGLFS-----------FDQRYRPVPLT---------QGFIGIK--G 324 (1230)
T ss_pred HhhhhheEEEEeeccCCCHHHHHHHhcCC---Cccceee-----------eccccccccee---------eeEEeee--c
Confidence 2345678999999997 888999998641 0111111 11111110000 0000000 0
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCC------------C--C------
Q 001758 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------------S--F------ 302 (1017)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~------------~--~------ 302 (1017)
. ........+....++. +.+.+.. +.+++|||+++.+..+.++.|.... + +
T Consensus 325 ~-~~~~~~~~~d~~~~~k----v~e~~~~----g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf 395 (1230)
T KOG0952|consen 325 K-KNRQQKKNIDEVCYDK----VVEFLQE----GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELF 395 (1230)
T ss_pred c-cchhhhhhHHHHHHHH----HHHHHHc----CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHH
Confidence 0 0000111111122222 2222222 4699999999999888887775210 0 1
Q ss_pred -cEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHH
Q 001758 303 -FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE 380 (1017)
Q Consensus 303 -~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~ 380 (1017)
..+..+|+||..++|..+++.|.+|. +|++||.+++.|+++|+-.++|- ....||...+. ..-.+-...+
T Consensus 396 ~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~ydsskg~----f~dlgilDVl 467 (1230)
T KOG0952|consen 396 QQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVYDSSKGS----FVDLGILDVL 467 (1230)
T ss_pred HhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----CCcccccccCc----eeeehHHHHH
Confidence 35778999999999999999999988 99999999999999999888884 34557777642 1223556779
Q ss_pred HhcCCCCCC---CCCcEEEEechh---hhccccccCCc---------------hhhh---ccHHHHHHHHHhhc--cccC
Q 001758 381 QRRGRTGRT---CDGQVYRLVTKS---FFGTLEDHECP---------------AILR---LSLRLQVLLICCAE--SKAI 434 (1017)
Q Consensus 381 QR~GRAGR~---~~G~c~rLys~~---~~~~l~~~~~P---------------EI~r---~~L~~~vL~l~~~~--~~~l 434 (1017)
|..|||||. ..|..+.+-+.+ .|..+-..+.| ||.- +++++.|--|++-- ...-
T Consensus 468 QifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~ 547 (1230)
T KOG0952|consen 468 QIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMR 547 (1230)
T ss_pred HHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEec
Confidence 999999999 468777776654 34444333332 1111 11111111111000 0000
Q ss_pred CChHHh--hhhcc-CCCCC-----chHHHHHHHHHHhhhcccCCCCCccccccchhhhcccCCChHHHHHHHHccc-cCc
Q 001758 435 SDPKVL--LQKAL-DPPYP-----EVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE-IGM 505 (1017)
Q Consensus 435 ~~~~~~--l~~~l-dpP~~-----~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~~~-~gc 505 (1017)
..|... ....+ .-|.. +.+..++..|.....+--+...|.+..|++||.|+.+.|..+..+.++.... +--
T Consensus 548 KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~s 627 (1230)
T KOG0952|consen 548 KNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYS 627 (1230)
T ss_pred cChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCC
Confidence 000000 00111 11211 2355666677666555332334777899999999999999999999999887 666
Q ss_pred hhhHHHHHHHhccC
Q 001758 506 LREGILLGILMDTQ 519 (1017)
Q Consensus 506 ~~e~l~Iaa~ls~~ 519 (1017)
.++++-++++.+..
T Consensus 628 e~~iL~lis~aeEf 641 (1230)
T KOG0952|consen 628 EDDILALISMAEEF 641 (1230)
T ss_pred HHHHHHHHHhhHhh
Confidence 78888888876543
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=7.5e-25 Score=261.66 Aligned_cols=316 Identities=17% Similarity=0.145 Sum_probs=198.5
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHH---HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeee
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~---lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
...++++|.+++..+..++..++++|||+|||..+..+ +++....+++++.|++.++.|..+++.+......+...+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~ 191 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHK 191 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeE
Confidence 46889999999999999999999999999999655433 234444489999999999999999887644322111111
Q ss_pred EeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccCh
Q 001758 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (1017)
Q Consensus 102 y~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld~ 181 (1017)
.. ... ......+|+|+|++.+.+.... .+.++++|||||||+ ....+ +..+++.+ .+..+++++|||+..
T Consensus 192 i~-~g~-~~~~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~-~~~~~-~~~il~~~---~~~~~~lGLTATp~~ 261 (501)
T PHA02558 192 IY-SGT-AKDTDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHL-FTGKS-LTSIITKL---DNCKFKFGLTGSLRD 261 (501)
T ss_pred Ee-cCc-ccCCCCCEEEeeHHHHhhchhh---hccccCEEEEEchhc-ccchh-HHHHHHhh---hccceEEEEeccCCC
Confidence 11 111 1124578999999999765422 234899999999994 33322 23333322 234579999999843
Q ss_pred HH-----HHHHHhhcCCCceeEEEEecC-CCccee-----eeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 001758 182 TK-----YRDYFRDLGRGERVEVLAIPS-TNQRTI-----FQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (1017)
Q Consensus 182 ~~-----~~~~f~~~~~~~~v~v~~~p~-~~~~~~-----~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1017)
.. +..+|+... ..+ .... ...+.. ..+...+-........ ...|. ..+..
T Consensus 262 ~~~~~~~~~~~fG~i~----~~v-~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~----------~~~~~----~~~~~ 322 (501)
T PHA02558 262 GKANILQYVGLFGDIF----KPV-TTSQLMEEGQVTDLKINSIFLRYPDEDRVKLK----------GEDYQ----EEIKY 322 (501)
T ss_pred ccccHHHHHHhhCCce----EEe-cHHHHHhCCCcCCceEEEEeccCCHHHhhhhc----------ccchH----HHHHH
Confidence 22 222333210 000 0000 000000 0011111000000000 00000 00000
Q ss_pred cccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-E
Q 001758 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (1017)
Q Consensus 251 ~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-k 329 (1017)
.........++.+++..+.. .++++|||+...++++.+++.|... +..+..+||+++.++|..+++.|+++. .
T Consensus 323 l~~~~~Rn~~I~~~~~~~~~----~~~~~lV~~~~~~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~~~~ 396 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLAK----KGENTFVMFKYVEHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGGKGI 396 (501)
T ss_pred HhccHHHHHHHHHHHHHHHh----cCCCEEEEEEEHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCCCCe
Confidence 00111223444455444432 1468999999999999999999853 468999999999999999999999887 8
Q ss_pred EEEEc-CcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCc
Q 001758 330 VILAT-NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ 393 (1017)
Q Consensus 330 VIVAT-niaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~ 393 (1017)
||||| +++++|+|+|+++.||. +++.. |+..+.||+||+||..+|+
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl--------~~p~~----------s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIF--------AHPSK----------SKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEEcceeccccccccccEEEE--------ecCCc----------chhhhhhhhhccccCCCCC
Confidence 99998 89999999999999996 56555 4556699999999997775
No 64
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=8.6e-27 Score=245.52 Aligned_cols=309 Identities=17% Similarity=0.240 Sum_probs=216.6
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC------CcEEEeccHHHHHHHH---HHHHHhhcCCccCCe
Q 001758 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM------EPILCTQPRRFAVVAV---AKMVAKGRNCELGGE 99 (1017)
Q Consensus 29 ~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~------~~IivtqPrrlaa~s~---a~rva~e~~~~lg~~ 99 (1017)
.|+|++.++..+.+++++.-|..|+|||..+...+++... +.+++++.| .+|.+. ..++++.++..+-.+
T Consensus 109 SPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtr-elALQtSqvc~~lskh~~i~vmvt 187 (459)
T KOG0326|consen 109 SPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTR-ELALQTSQVCKELSKHLGIKVMVT 187 (459)
T ss_pred CCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecc-hhhHHHHHHHHHHhcccCeEEEEe
Confidence 4678999999999999999999999999777777776543 245555555 445444 445555555443333
Q ss_pred eeEeecccc--ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEee
Q 001758 100 VGYHIGHSK--HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1017)
Q Consensus 100 VGy~v~~~~--~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSA 177 (1017)
+|-..-.++ ++....+++|+|||++++++..+--.+.+...+|+|||+ ..+..||...+-+.+....++.|+++.||
T Consensus 188 tGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySA 266 (459)
T KOG0326|consen 188 TGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSA 266 (459)
T ss_pred cCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEec
Confidence 332211122 235678999999999999988765556699999999999 68888998877777777788899999999
Q ss_pred ccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhH
Q 001758 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1017)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1017)
|.+. ....|.+.. ...|.++ ...++. ...+ .... |.-......
T Consensus 267 TFP~-tVk~Fm~~~-l~kPy~I----------------NLM~eL-tl~G---------vtQy--------YafV~e~qK- 309 (459)
T KOG0326|consen 267 TFPL-TVKGFMDRH-LKKPYEI----------------NLMEEL-TLKG---------VTQY--------YAFVEERQK- 309 (459)
T ss_pred ccch-hHHHHHHHh-ccCccee----------------ehhhhh-hhcc---------hhhh--------eeeechhhh-
Confidence 9752 233333321 0111111 111110 0000 0000 000011111
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATni 336 (1017)
...+..+...+. -.+.+|||++...+|-++..+... ++...++|+.|.++.|..++..|++|. +.+|||+.
T Consensus 310 vhCLntLfskLq------INQsIIFCNS~~rVELLAkKITel--GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 310 VHCLNTLFSKLQ------INQSIIFCNSTNRVELLAKKITEL--GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred hhhHHHHHHHhc------ccceEEEeccchHhHHHHHHHHhc--cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 112223333222 236799999999999999998854 478899999999999999999999999 99999999
Q ss_pred ccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 337 aetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
+.+||||++|++||+ ||.+...++| +||+||+||. ..|.++.|++-++
T Consensus 382 ~TRGIDiqavNvVIN--------FDfpk~aEtY----------LHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVIN--------FDFPKNAETY----------LHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred hhcccccceeeEEEe--------cCCCCCHHHH----------HHHccCCccCCCcceEEEEEehhh
Confidence 999999999999999 9999977666 9999999999 5899999998543
No 65
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.94 E-value=4.8e-27 Score=252.31 Aligned_cols=310 Identities=19% Similarity=0.257 Sum_probs=210.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHh--HHHHH--HHHhcCC--------C-cEEEeccHHHHHHHHHHHHHhhc--
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQ--FLLAENM--------E-PILCTQPRRFAVVAVAKMVAKGR-- 92 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKT--tqip~--~lle~~~--------~-~IivtqPrrlaa~s~a~rva~e~-- 92 (1017)
.+++|-+-++.++.+++.|-.|-|||||| +.+|. ++++... + -=+++.|.|.+|.|...-+.+..
T Consensus 193 PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~ 272 (610)
T KOG0341|consen 193 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAA 272 (610)
T ss_pred CCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999999 33443 3444321 1 12344466666666655443321
Q ss_pred ----CCcc---CCeee-Eeec-cccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHH
Q 001758 93 ----NCEL---GGEVG-YHIG-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQL 163 (1017)
Q Consensus 93 ----~~~l---g~~VG-y~v~-~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~l 163 (1017)
|.+. +-.+| ..++ .-+..+...+|+|+|||+|..++..+.+++.-..++.+|||+ |.++..|-..+-..+
T Consensus 273 L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF 351 (610)
T KOG0341|consen 273 LQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIF 351 (610)
T ss_pred HHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHHHHH
Confidence 1110 00111 1122 123446789999999999999998887777788999999999 899988766554444
Q ss_pred HhcCCCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCC
Q 001758 164 LLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (1017)
Q Consensus 164 l~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (1017)
-......|.+++|||++ .+++.|-... ...|+.+ ++. +.-......+.++. .
T Consensus 352 ~~FK~QRQTLLFSATMP-~KIQ~FAkSA-LVKPvtv-NVG-----RAGAAsldViQevE-y------------------- 403 (610)
T KOG0341|consen 352 SFFKGQRQTLLFSATMP-KKIQNFAKSA-LVKPVTV-NVG-----RAGAASLDVIQEVE-Y------------------- 403 (610)
T ss_pred HHHhhhhheeeeecccc-HHHHHHHHhh-cccceEE-ecc-----cccccchhHHHHHH-H-------------------
Confidence 44445568999999997 3444444321 1122221 110 00000000011000 0
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHh
Q 001758 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (1017)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~ 323 (1017)
... ...+..++.-+.++ ..++|||+..+.++..++++|. ..++.++.+|||-++++|...+++
T Consensus 404 -----Vkq------EaKiVylLeCLQKT----~PpVLIFaEkK~DVD~IhEYLL--lKGVEavaIHGGKDQedR~~ai~a 466 (610)
T KOG0341|consen 404 -----VKQ------EAKIVYLLECLQKT----SPPVLIFAEKKADVDDIHEYLL--LKGVEAVAIHGGKDQEDRHYAIEA 466 (610)
T ss_pred -----HHh------hhhhhhHHHHhccC----CCceEEEeccccChHHHHHHHH--HccceeEEeecCcchhHHHHHHHH
Confidence 000 00112233333333 3589999999999999999987 456899999999999999999999
Q ss_pred ccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 324 f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
|+.|+ .|+|||++|..|+|+|+|.+||| ||+|..++.| .||+||+||. ..|..-.++.+.
T Consensus 467 fr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIENY----------VHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 467 FRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIENY----------VHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HhcCCCceEEEecchhccCCCccchhhcc--------CCChHHHHHH----------HHHhcccCCCCCcceeeeeeccc
Confidence 99888 99999999999999999999999 9999877766 9999999999 579999888864
No 66
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=249.07 Aligned_cols=315 Identities=19% Similarity=0.269 Sum_probs=203.0
Q ss_pred chHHHHHHHHHHH---------cCCcEEEEcCCCCcHhHHHHHHHHh----cCCC--cEEEeccHHHHHHHHHHHHHhhc
Q 001758 28 VMSLREKIVEKVL---------ENRVTLIVGETGCGKSSQVPQFLLA----ENME--PILCTQPRRFAVVAVAKMVAKGR 92 (1017)
Q Consensus 28 i~~~Q~eil~ai~---------~~~~vII~apTGSGKTtqip~~lle----~~~~--~IivtqPrrlaa~s~a~rva~e~ 92 (1017)
.+++|..+++.++ ..+++.|.||||||||..+...+.. .... +.+|+.|.+.++.|+++-+....
T Consensus 160 ~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~ 239 (620)
T KOG0350|consen 160 LFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLN 239 (620)
T ss_pred ccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhc
Confidence 5677888888874 2479999999999999443333332 2111 56777788888999988776543
Q ss_pred CCccCCeeeEeecccc------cc-CC----CCcEEEECHHHHHHHHH-hcCCCccCceEEEEeccccccccccH---HH
Q 001758 93 NCELGGEVGYHIGHSK------HL-SE----RSKIVFKTAGVLLDEMR-DRGLNALKYKVIILDEVHERSVESDL---VL 157 (1017)
Q Consensus 93 ~~~lg~~VGy~v~~~~------~~-~~----~t~Iiv~T~g~Ll~~l~-~~~l~l~~~~~IIIDEaHER~~~~d~---ll 157 (1017)
. ..|-.|+...+..+ ++ .. ..+|+|+|||+|.+.+. ..++.+.++.++|||||+ |.++.-| +.
T Consensus 240 ~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl~ 317 (620)
T KOG0350|consen 240 S-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWLD 317 (620)
T ss_pred c-CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHHH
Confidence 2 33434443323221 11 12 34899999999999998 467888899999999999 6655422 11
Q ss_pred HH---H---------HHHHh-------------------cCCCceEEEEeecc--ChHHHHHHHhhcCCCceeEEEEecC
Q 001758 158 VC---V---------KQLLL-------------------KKNDLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIPS 204 (1017)
Q Consensus 158 ~~---l---------k~ll~-------------------~~~~lklIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~p~ 204 (1017)
.+ + ..++. ..+.+.-++.|||+ ++.++.++--...+ +..+..|.
T Consensus 318 ~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr---l~~v~~~~ 394 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR---LFHVSKPL 394 (620)
T ss_pred HHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc---eEEeeccc
Confidence 11 1 11111 12334466777776 66666655432111 00101000
Q ss_pred CCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeC
Q 001758 205 TNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLP 284 (1017)
Q Consensus 205 ~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~ 284 (1017)
+-.+-+...... .+.. .+..+.+. .+...|+... ..++|+|++
T Consensus 395 --------~~ryslp~~l~~--------------~~vv------~~~~~kpl------~~~~lI~~~k---~~r~lcf~~ 437 (620)
T KOG0350|consen 395 --------IGRYSLPSSLSH--------------RLVV------TEPKFKPL------AVYALITSNK---LNRTLCFVN 437 (620)
T ss_pred --------ceeeecChhhhh--------------ceee------cccccchH------hHHHHHHHhh---cceEEEEec
Confidence 000000000000 0000 00001110 1122233332 358999999
Q ss_pred CHHHHHHHHHHhc-C-CCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeec
Q 001758 285 TYYALEQQWHLMK-P-LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWD 361 (1017)
Q Consensus 285 ~~~~ie~l~~~L~-~-~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd 361 (1017)
+.+.+.+++..|. . ...+..+-.+.|++....|.+.++.|..|. +|+||++++++|||+-+|+.||+ ||
T Consensus 438 S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd 509 (620)
T KOG0350|consen 438 SVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD 509 (620)
T ss_pred chHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC
Confidence 9999999999886 2 223456777899999999999999999888 99999999999999999999999 99
Q ss_pred CCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 362 VNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 362 ~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
+|.....| .||+||++|. +.|.||.|.+++.
T Consensus 510 ~P~~~kty----------VHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 510 PPASDKTY----------VHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred CCchhhHH----------HHhhcccccccCCceEEEeecccc
Confidence 99866655 9999999999 6899999998754
No 67
>PRK13766 Hef nuclease; Provisional
Probab=99.93 E-value=2.3e-24 Score=271.46 Aligned_cols=357 Identities=21% Similarity=0.259 Sum_probs=222.4
Q ss_pred cCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 21 PEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 21 ~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~ll---e~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
.....+..++||.+++..+.++ +++|++|||+|||.+....+. ....++++++.|++.++.|.++.+...++.. +
T Consensus 9 ~~~~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~ 86 (773)
T PRK13766 9 IKPNTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIP-E 86 (773)
T ss_pred cCcCcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-C
Confidence 3345688899999999988876 899999999999975444433 3334689999999999999988888766542 1
Q ss_pred CeeeEeeccc-----cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceE
Q 001758 98 GEVGYHIGHS-----KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (1017)
Q Consensus 98 ~~VGy~v~~~-----~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lkl 172 (1017)
..+....+.. .....+.+|+|+||+++...+..+.+.+.++++||||||| |.........+++.+....+..++
T Consensus 87 ~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 87 EKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred ceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEE
Confidence 1222111111 1123467899999999998887776666799999999999 554443444455555556667789
Q ss_pred EEEeecc--ChHHHHHHHhhcCCCceeEEEEecCCC-cce--eeee---Eee--------------hHHHHHHHh---cc
Q 001758 173 VLMSATA--DITKYRDYFRDLGRGERVEVLAIPSTN-QRT--IFQR---RVS--------------YLEQVTELL---GV 227 (1017)
Q Consensus 173 IlmSATl--d~~~~~~~f~~~~~~~~v~v~~~p~~~-~~~--~~~v---~v~--------------yl~~~~~~l---~~ 227 (1017)
++||||+ +.+.+......++.. .+.+....... ... ...+ .+. +++.....+ +.
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~-~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIE-HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCce-EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999997 444555555544211 11111000000 000 0000 000 000000000 00
Q ss_pred CCCCcc-----ccc-----------c---------------------------------ccccC-----C--CCCCc---
Q 001758 228 DHGMTS-----ELS-----------S---------------------------------LRYCS-----G--PSPSM--- 248 (1017)
Q Consensus 228 ~~~~~~-----~~~-----------~---------------------------------~~~~~-----~--~~~~~--- 248 (1017)
...... +.. . ..|.. . .....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 000000 000 0 00000 0 00000
Q ss_pred ---cc------------cccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCC--
Q 001758 249 ---AN------------AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS-- 311 (1017)
Q Consensus 249 ---~~------------~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~-- 311 (1017)
.+ ........+.+.+++..+.... .++++|||+++++.++.+.+.|.. .++.+..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~--~~~kvlIF~~~~~t~~~L~~~L~~--~~~~~~~~~g~~~ 400 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKN--PDSRIIVFTQYRDTAEKIVDLLEK--EGIKAVRFVGQAS 400 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHh--CCCceEEEEcccc
Confidence 00 0000011223334444433222 257999999999999999999964 34667777775
Q ss_pred ------CCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcC
Q 001758 312 ------VDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (1017)
Q Consensus 312 ------l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~G 384 (1017)
|+..+|..+++.|+.+. +|+|||+++++|+|+|++++||. ||++.+.. .+.||+|
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~~s~~----------r~iQR~G 462 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPVPSEI----------RSIQRKG 462 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCCCCHH----------HHHHHhc
Confidence 89999999999999888 99999999999999999999998 99876444 4599999
Q ss_pred CCCCCCCCcEEEEechhhh
Q 001758 385 RTGRTCDGQVYRLVTKSFF 403 (1017)
Q Consensus 385 RAGR~~~G~c~rLys~~~~ 403 (1017)
|+||.++|.+|.|++++..
T Consensus 463 R~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 463 RTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred ccCcCCCCEEEEEEeCCCh
Confidence 9999999999999987543
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.93 E-value=2.4e-24 Score=246.70 Aligned_cols=311 Identities=15% Similarity=0.153 Sum_probs=177.8
Q ss_pred HHHHHHHHHHcCC--cEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcC-------CccCCeee
Q 001758 31 LREKIVEKVLENR--VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-------CELGGEVG 101 (1017)
Q Consensus 31 ~Q~eil~ai~~~~--~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~-------~~lg~~VG 101 (1017)
+|.++++++.+++ +++|++|||||||......++... .+.+++.|.+.++.+.++++..... ..++...|
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~-~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g 79 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE-NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSK 79 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecC
Confidence 5899999998776 489999999999977766666543 3567777888888888887766542 11111111
Q ss_pred Eeec----c----------c--------cccCCCCcEEEECHHHHHHHHHh----cCC----CccCceEEEEeccccccc
Q 001758 102 YHIG----H----------S--------KHLSERSKIVFKTAGVLLDEMRD----RGL----NALKYKVIILDEVHERSV 151 (1017)
Q Consensus 102 y~v~----~----------~--------~~~~~~t~Iiv~T~g~Ll~~l~~----~~l----~l~~~~~IIIDEaHER~~ 151 (1017)
-... . + ......+.|+++||++|...+.. ... .+.++++|||||+|+.+.
T Consensus 80 ~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 80 ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 1000 0 0 00023577889999999865542 110 124899999999997654
Q ss_pred cc-cHHH---HHHHHHHhcCCCceEEEEeeccChHHHHHHHhhcC-CCceeEEEEecCCCcceeeeeEeehHHHHHHHhc
Q 001758 152 ES-DLVL---VCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLG-RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLG 226 (1017)
Q Consensus 152 ~~-d~ll---~~lk~ll~~~~~lklIlmSATld~~~~~~~f~~~~-~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~ 226 (1017)
.. +.++ ...+.+.......++|+||||++.. +.+.+...+ .+. ++..+++.. ..++- + .+......
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~~~--~~~~v~g~~--~~~~~---~-~~~~~~~~ 230 (357)
T TIGR03158 160 KQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA-LILRLQNAKQAGV--KIAPIDGEK--YQFPD---N-PELEADNK 230 (357)
T ss_pred ccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHhccccCc--eeeeecCcc--cccCC---C-hhhhcccc
Confidence 33 2222 2333222223357999999999754 444444321 122 222222210 00000 0 00000000
Q ss_pred cCCCCcc--ccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcE
Q 001758 227 VDHGMTS--ELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFK 304 (1017)
Q Consensus 227 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~ 304 (1017)
.. +... ......+.. .. .........+.+.+.+.....+ ++++|||+++++.++.++..|+....++.
T Consensus 231 ~~-~~~~~~~~i~~~~~~--~~-----~~~~~~l~~l~~~i~~~~~~~~--~~k~LIf~nt~~~~~~l~~~L~~~~~~~~ 300 (357)
T TIGR03158 231 TQ-SFRPVLPPVELELIP--AP-----DFKEEELSELAEEVIERFRQLP--GERGAIILDSLDEVNRLSDLLQQQGLGDD 300 (357)
T ss_pred cc-ccceeccceEEEEEe--CC-----chhHHHHHHHHHHHHHHHhccC--CCeEEEEECCHHHHHHHHHHHhhhCCCce
Confidence 00 0000 000000000 00 0111111111122222222222 46899999999999999999986544567
Q ss_pred EEEecCCCCHHHHHHHHHhccCCcEEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcC
Q 001758 305 VHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (1017)
Q Consensus 305 v~~lHs~l~~~er~~i~~~f~~grkVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~G 384 (1017)
+..+||.+++.+|.++. ..+|+|||+++|+|||||++ +|| ++ +. +..+|.||+|
T Consensus 301 ~~~l~g~~~~~~R~~~~-----~~~iLVaTdv~~rGiDi~~~-~vi---------~~-p~----------~~~~yiqR~G 354 (357)
T TIGR03158 301 IGRITGFAPKKDRERAM-----QFDILLGTSTVDVGVDFKRD-WLI---------FS-AR----------DAAAFWQRLG 354 (357)
T ss_pred EEeeecCCCHHHHHHhc-----cCCEEEEecHHhcccCCCCc-eEE---------EC-CC----------CHHHHhhhcc
Confidence 88999999999886542 23899999999999999987 555 33 22 4567799999
Q ss_pred CCC
Q 001758 385 RTG 387 (1017)
Q Consensus 385 RAG 387 (1017)
|+|
T Consensus 355 R~g 357 (357)
T TIGR03158 355 RLG 357 (357)
T ss_pred cCC
Confidence 998
No 69
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.92 E-value=3.1e-24 Score=242.93 Aligned_cols=315 Identities=17% Similarity=0.217 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc-----CCCcEEEeccHHHHHHHHHHHHHhhc----CCccCCe
Q 001758 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGR----NCELGGE 99 (1017)
Q Consensus 29 ~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~-----~~~~IivtqPrrlaa~s~a~rva~e~----~~~lg~~ 99 (1017)
+++|..+|+++..+-++||.+..|+|||..+..+.++. ....++++.|+|.+|+|+...+.... |......
T Consensus 49 tkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvf 128 (980)
T KOG4284|consen 49 TKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVF 128 (980)
T ss_pred CchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEE
Confidence 57899999999999999999999999995444333332 22345556666666777766655422 2222122
Q ss_pred eeEe-eccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHH-HHHHhcCCCceEEEEee
Q 001758 100 VGYH-IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCV-KQLLLKKNDLRVVLMSA 177 (1017)
Q Consensus 100 VGy~-v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~l-k~ll~~~~~lklIlmSA 177 (1017)
+|-. +..+...-..++|+|+|||+++.+...+.++..+++++|+|||+ ..+++..+..-+ +.+-......|++.+||
T Consensus 129 IGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~SA 207 (980)
T KOG4284|consen 129 IGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFSA 207 (980)
T ss_pred ecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEec
Confidence 2211 12233334678999999999999998888888899999999999 556655444444 44444455679999999
Q ss_pred ccC---hHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccc
Q 001758 178 TAD---ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1017)
Q Consensus 178 Tld---~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1017)
|.+ .+.+.+|+++. . .+.... .....+..+-+|. ....++ ..
T Consensus 208 TYp~nLdn~Lsk~mrdp-----~-lVr~n~-~d~~L~GikQyv~-----------------------~~~s~n-----ns 252 (980)
T KOG4284|consen 208 TYPRNLDNLLSKFMRDP-----A-LVRFNA-DDVQLFGIKQYVV-----------------------AKCSPN-----NS 252 (980)
T ss_pred cCchhHHHHHHHHhccc-----c-eeeccc-CCceeechhheee-----------------------eccCCc-----ch
Confidence 975 24666666541 1 111111 1111222221110 011111 11
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEE
Q 001758 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1017)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVA 333 (1017)
-+...+....+.++....+ -.+.||||+....++.++..|. ..++.+.++.|.|++.+|..+++.++.-+ +|||+
T Consensus 253 veemrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~--ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 253 VEEMRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLK--SSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred HHHHHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhh--ccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 1222333344455555444 3578999999999999999998 56699999999999999999999999888 99999
Q ss_pred cCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC-CCcEEEEechh
Q 001758 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 401 (1017)
Q Consensus 334 TniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rLys~~ 401 (1017)
|+..++|||-|.|+.||+ .|++.+.+.| .||+|||||.+ .|..+.++..+
T Consensus 329 TDLtaRGIDa~~vNLVVN--------iD~p~d~eTY----------~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVN--------IDAPADEETY----------FHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred cchhhccCCccccceEEe--------cCCCcchHHH----------HHHhhhcccccccceeEEEeccc
Confidence 999999999999999999 8999877776 99999999994 69998887653
No 70
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.1e-24 Score=236.25 Aligned_cols=305 Identities=19% Similarity=0.220 Sum_probs=206.4
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----CC-------CcEEEeccHHHHHHHHHHHHHhhc---C
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NM-------EPILCTQPRRFAVVAVAKMVAKGR---N 93 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----~~-------~~IivtqPrrlaa~s~a~rva~e~---~ 93 (1017)
.+.+|..+|+.+++|++++..|.||||||..+...+++. .. ..-+++.|++.+|+|+.+-+.+.. +
T Consensus 42 pTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~ 121 (569)
T KOG0346|consen 42 PTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCS 121 (569)
T ss_pred cchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999995554444322 11 135566677778888877665421 1
Q ss_pred -----CccCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcC-CCccCceEEEEeccccccccccHHHHHHHHHHhcC
Q 001758 94 -----CELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1017)
Q Consensus 94 -----~~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~-l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~ 167 (1017)
..+.....-.+ ....+.+.++|+|+||+.+++.+..+. ..+..++++|||||+ -.+.-.+-..+.+......
T Consensus 122 k~lr~~nl~s~~sdsv-~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeedlk~l~~~LP 199 (569)
T KOG0346|consen 122 KDLRAINLASSMSDSV-NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEEDLKKLRSHLP 199 (569)
T ss_pred HhhhhhhhhcccchHH-HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHHHHHHHHhCC
Confidence 11111111111 112345789999999999999998776 334489999999999 2333333333333334446
Q ss_pred CCceEEEEeecc--ChHHHHHHHhhcCCCceeEEEEecC-----CCcceeeeeEeehHHHHHHHhccCCCCccccccccc
Q 001758 168 NDLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIPS-----TNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRY 240 (1017)
Q Consensus 168 ~~lklIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~p~-----~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~ 240 (1017)
+..|-++||||+ |...+.+.|-. .|+. +.... ..+-..|.+...
T Consensus 200 r~~Q~~LmSATl~dDv~~LKkL~l~----nPvi-Lkl~e~el~~~dqL~Qy~v~cs------------------------ 250 (569)
T KOG0346|consen 200 RIYQCFLMSATLSDDVQALKKLFLH----NPVI-LKLTEGELPNPDQLTQYQVKCS------------------------ 250 (569)
T ss_pred chhhheeehhhhhhHHHHHHHHhcc----CCeE-EEeccccCCCcccceEEEEEec------------------------
Confidence 678999999998 56677777632 2222 11111 011111111110
Q ss_pred cCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHH
Q 001758 241 CSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMA 320 (1017)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i 320 (1017)
..+.+-++.. +..+. -..|++|||+|+.+.+.++.-.|...+ ++..+|.|.||..-|..+
T Consensus 251 -------------e~DKflllya-llKL~----LI~gKsliFVNtIdr~YrLkLfLeqFG--iksciLNseLP~NSR~Hi 310 (569)
T KOG0346|consen 251 -------------EEDKFLLLYA-LLKLR----LIRGKSLIFVNTIDRCYRLKLFLEQFG--IKSCILNSELPANSRCHI 310 (569)
T ss_pred -------------cchhHHHHHH-HHHHH----HhcCceEEEEechhhhHHHHHHHHHhC--cHhhhhcccccccchhhH
Confidence 0111111111 11111 125899999999999999888887543 778899999999999999
Q ss_pred HHhccCCc-EEEEEcCc-----------------------------------ccccccCCCeeEEEeCCccceeeecCCC
Q 001758 321 MKICKSHR-KVILATNI-----------------------------------AESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (1017)
Q Consensus 321 ~~~f~~gr-kVIVATni-----------------------------------aetGIdIP~V~~VId~G~~k~~~yd~~~ 364 (1017)
++.|..|- .|||||+. ..+|||+-.|..||| ||.|.
T Consensus 311 i~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD~P~ 382 (569)
T KOG0346|consen 311 IEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FDFPE 382 (569)
T ss_pred HHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee--------cCCCC
Confidence 99999998 99999992 137999999999999 99999
Q ss_pred CccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 365 KIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 365 ~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
.+.+| +||+||++|. .+|.+..++.+.
T Consensus 383 t~~sY----------IHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 383 TVTSY----------IHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred chHHH----------HHhccccccCCCCCceEEEecch
Confidence 87777 9999999999 789999888764
No 71
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.7e-23 Score=252.28 Aligned_cols=326 Identities=17% Similarity=0.187 Sum_probs=198.9
Q ss_pred cCCCCchHHHHHHHHHHHcC---CcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 001758 23 FSSLPVMSLREKIVEKVLEN---RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~ai~~~---~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~ 99 (1017)
+....+++||.+++.++..+ +..||++|||+|||.+....+... .++++|+.|+..++.|..+.+.+......+ .
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-~k~tLILvps~~Lv~QW~~ef~~~~~l~~~-~ 328 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS-Q 328 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc-e
Confidence 34567899999999998743 478999999999997766554433 457888889999999988888775443222 2
Q ss_pred eeEeecccc-ccCCCCcEEEECHHHHHHHHHh--------cCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCc
Q 001758 100 VGYHIGHSK-HLSERSKIVFKTAGVLLDEMRD--------RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1017)
Q Consensus 100 VGy~v~~~~-~~~~~t~Iiv~T~g~Ll~~l~~--------~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~l 170 (1017)
++...+..+ .......|+|+|++++...... +.+....+++||+||||. ... ...+.++..-...
T Consensus 329 I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lpA-----~~fr~il~~l~a~ 402 (732)
T TIGR00603 329 ICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VPA-----AMFRRVLTIVQAH 402 (732)
T ss_pred EEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-ccH-----HHHHHHHHhcCcC
Confidence 332222211 1123478999999988532111 112223789999999993 322 2233333332344
Q ss_pred eEEEEeeccC--hHHHHHHHhhcCCCceeEEEEecCC---Cccee-----eeeEeehHHHHHHHhccCCCCccccccccc
Q 001758 171 RVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPST---NQRTI-----FQRRVSYLEQVTELLGVDHGMTSELSSLRY 240 (1017)
Q Consensus 171 klIlmSATld--~~~~~~~f~~~~~~~~v~v~~~p~~---~~~~~-----~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~ 240 (1017)
..+++|||+. .+....++.-+|.. +...+.. ..+.. .++.+...++.... |
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~LiGP~----vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~---------------y 463 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLIGPK----LYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE---------------Y 463 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhcCCe----eeecCHHHHHhCCccccceEEEEEecCCHHHHHH---------------H
Confidence 6799999972 22233322222210 1111100 00111 11111111110000 0
Q ss_pred cCCC-CCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHH
Q 001758 241 CSGP-SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALM 319 (1017)
Q Consensus 241 ~~~~-~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~ 319 (1017)
.... ..........+.....+..++.. +.. .+.++|||+...+.++.+++.|. +..+||+++..+|..
T Consensus 464 l~~~~~~k~~l~~~np~K~~~~~~Li~~-he~---~g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 464 LRENSRKRMLLYVMNPNKFRACQFLIRF-HEQ---RGDKIIVFSDNVFALKEYAIKLG-------KPFIYGPTSQQERMQ 532 (732)
T ss_pred HHhcchhhhHHhhhChHHHHHHHHHHHH-Hhh---cCCeEEEEeCCHHHHHHHHHHcC-------CceEECCCCHHHHHH
Confidence 0000 00000111223333444444332 221 25699999999999999988874 345899999999999
Q ss_pred HHHhccCC-c-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCC-cE--
Q 001758 320 AMKICKSH-R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDG-QV-- 394 (1017)
Q Consensus 320 i~~~f~~g-r-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G-~c-- 394 (1017)
+++.|+.+ . ++||+|+++.+|||+|++++||. ++.+.+ |+.++.||.||++|.++| .+
T Consensus 533 il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~~g---------S~~q~iQRlGRilR~~~~~~~~~ 595 (732)
T TIGR00603 533 ILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSHYG---------SRRQEAQRLGRILRAKKGSDAEE 595 (732)
T ss_pred HHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCCCC---------CHHHHHHHhcccccCCCCCcccc
Confidence 99999854 6 99999999999999999999998 665522 677889999999999654 33
Q ss_pred -----EEEechhhh
Q 001758 395 -----YRLVTKSFF 403 (1017)
Q Consensus 395 -----~rLys~~~~ 403 (1017)
|.|++++..
T Consensus 596 ~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 596 YNAFFYSLVSKDTQ 609 (732)
T ss_pred ccceEEEEecCCch
Confidence 888886543
No 72
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=8.2e-24 Score=243.09 Aligned_cols=354 Identities=16% Similarity=0.211 Sum_probs=237.5
Q ss_pred CccCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHh----HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCC
Q 001758 19 TSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKS----SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1017)
Q Consensus 19 ~~~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKT----tqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~ 94 (1017)
|++..=.+-+.++|..++..+.+++.|+|+|-|.+||| +++++.+.+ .++||+|.|-..+..|-++.+-.|++
T Consensus 121 ~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~- 197 (1041)
T KOG0948|consen 121 PPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFK- 197 (1041)
T ss_pred CcccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhc-
Confidence 33333356788999999999999999999999999999 445555544 36899999999888888888877775
Q ss_pred ccCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEE
Q 001758 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1017)
Q Consensus 95 ~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIl 174 (1017)
. ||.. ..+-..++++..+|||+++|..++..+.--+..+.+||+||+| .+-+.+-...+-..++....+.+.|+
T Consensus 198 D----VGLM-TGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGVVWEETIIllP~~vr~VF 271 (1041)
T KOG0948|consen 198 D----VGLM-TGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGVVWEETIILLPDNVRFVF 271 (1041)
T ss_pred c----ccee-ecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hccccccceeeeeeEEeccccceEEE
Confidence 2 5544 3344457889999999999999888765445699999999999 22222221122223344567899999
Q ss_pred Eeecc-ChHHHHHHHhhcCCCceeEEEEecCCC---cceeeeeE---e--------ehHHHH----HHHhccCCCCcc-c
Q 001758 175 MSATA-DITKYRDYFRDLGRGERVEVLAIPSTN---QRTIFQRR---V--------SYLEQV----TELLGVDHGMTS-E 234 (1017)
Q Consensus 175 mSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~---~~~~~~v~---v--------~yl~~~----~~~l~~~~~~~~-~ 234 (1017)
+|||+ |+..|++|...+.. .|+.|++..-++ +...||.- + .|-++- ...+........ .
T Consensus 272 LSATiPNA~qFAeWI~~ihk-QPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~ 350 (1041)
T KOG0948|consen 272 LSATIPNARQFAEWICHIHK-QPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKK 350 (1041)
T ss_pred EeccCCCHHHHHHHHHHHhc-CCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccc
Confidence 99997 89999999987643 456666654443 23334421 0 011111 111110000000 0
Q ss_pred cccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCC--------------
Q 001758 235 LSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-------------- 300 (1017)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~-------------- 300 (1017)
....+...+... ....-..+ +.+++..+.... ..+|+||.-+++++|..+-.+.++.
T Consensus 351 ~~~~k~~kG~~~--~~~~~~s~----i~kiVkmi~~~~---~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF 421 (1041)
T KOG0948|consen 351 KANKKGRKGGTG--GKGPGDSD----IYKIVKMIMERN---YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIF 421 (1041)
T ss_pred ccccccccCCcC--CCCCCccc----HHHHHHHHHhhc---CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHH
Confidence 000000000000 00001112 334555555443 4599999999999998877664211
Q ss_pred -----------CC------------cEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccc
Q 001758 301 -----------SF------------FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSL 356 (1017)
Q Consensus 301 -----------~~------------~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k 356 (1017)
.+ -.|.++||||-+--++.++=.|..|- ||++||.+.+.|+|+|.-++|.-
T Consensus 422 ~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----- 496 (1041)
T KOG0948|consen 422 NNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----- 496 (1041)
T ss_pred HHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe-----
Confidence 00 14778999998888888888899998 99999999999999998887773
Q ss_pred eeeecCCCCccccceeecCHhhHHHhcCCCCCC---CCCcEEEEechh
Q 001758 357 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKS 401 (1017)
Q Consensus 357 ~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~---~~G~c~rLys~~ 401 (1017)
..++.+.-...|||..+|+||.|||||. ..|+|+.++++.
T Consensus 497 -----~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 497 -----AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred -----eccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 2334444567899999999999999999 479999999875
No 73
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.5e-23 Score=238.55 Aligned_cols=315 Identities=18% Similarity=0.218 Sum_probs=208.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----C----C--CcEEEeccHHHHHHHHHHHHHhhcC-CccC
Q 001758 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----N----M--EPILCTQPRRFAVVAVAKMVAKGRN-CELG 97 (1017)
Q Consensus 29 ~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~----~----~--~~IivtqPrrlaa~s~a~rva~e~~-~~lg 97 (1017)
.+.|.++++.+..+++++.|+|||||||..+...++.. . . -+.+++.|.|.+|.+++....+.-- ..-+
T Consensus 160 t~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~ 239 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS 239 (593)
T ss_pred CcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc
Confidence 45678999999999999999999999996554444432 1 1 1567778888888887776655320 1101
Q ss_pred -Ceee--Eeec----cccccCCCCcEEEECHHHHHHHHHhcC--CCccCceEEEEeccccccccc-cHHHHHHHHHHh-c
Q 001758 98 -GEVG--YHIG----HSKHLSERSKIVFKTAGVLLDEMRDRG--LNALKYKVIILDEVHERSVES-DLVLVCVKQLLL-K 166 (1017)
Q Consensus 98 -~~VG--y~v~----~~~~~~~~t~Iiv~T~g~Ll~~l~~~~--l~l~~~~~IIIDEaHER~~~~-d~ll~~lk~ll~-~ 166 (1017)
...+ |... .........+|++.||-.+...+..+. +.+..+.++|+||++ +..+. .|...+-..+.. .
T Consensus 240 ~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~ 318 (593)
T KOG0344|consen 240 LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQ 318 (593)
T ss_pred hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhc
Confidence 1111 1100 001113457899999999998887654 455699999999999 66665 343333333222 2
Q ss_pred CCCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCC
Q 001758 167 KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1017)
Q Consensus 167 ~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1017)
.+++++-++|||++ ....+|...... ..+.+. +...+. -.+.+.+. ..|+..
T Consensus 319 s~~i~~a~FSat~~-~~VEE~~~~i~~-~~~~vi-vg~~~s---------a~~~V~Qe-------------lvF~gs--- 370 (593)
T KOG0344|consen 319 SPDIRVALFSATIS-VYVEEWAELIKS-DLKRVI-VGLRNS---------ANETVDQE-------------LVFCGS--- 370 (593)
T ss_pred Ccchhhhhhhcccc-HHHHHHHHHhhc-cceeEE-Eecchh---------Hhhhhhhh-------------heeeec---
Confidence 58899999999975 334555543211 111111 100000 00000000 001100
Q ss_pred CccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccC
Q 001758 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (1017)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1017)
.....-.+..++ ... ...++|||+.+.+.+.++...|. ...++.|..+||..++.+|...++.|+.
T Consensus 371 -------e~~K~lA~rq~v---~~g---~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 371 -------EKGKLLALRQLV---ASG---FKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred -------chhHHHHHHHHH---hcc---CCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhc
Confidence 000111122222 111 24699999999999999999994 3567889999999999999999999999
Q ss_pred Cc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhc
Q 001758 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1017)
Q Consensus 327 gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1017)
|. +|++||+++++|||+-||+.||+ ||.+.. ..+|.+|+||+||. ..|++|.+|++++..
T Consensus 437 g~IwvLicTdll~RGiDf~gvn~VIn--------yD~p~s----------~~syihrIGRtgRag~~g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 437 GKIWVLICTDLLARGIDFKGVNLVIN--------YDFPQS----------DLSYIHRIGRTGRAGRSGKAITFYTDQDMP 498 (593)
T ss_pred cCeeEEEehhhhhccccccCcceEEe--------cCCCch----------hHHHHHHhhccCCCCCCcceEEEeccccch
Confidence 99 99999999999999999999999 999884 45569999999999 679999999986543
No 74
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.6e-23 Score=251.72 Aligned_cols=314 Identities=19% Similarity=0.256 Sum_probs=218.7
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHH--HHHHHhc-------CCC-cEEEeccHHHHHHHHHHHHHhhcCCcc
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAE-------NME-PILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqi--p~~lle~-------~~~-~IivtqPrrlaa~s~a~rva~e~~~~l 96 (1017)
+.+++|.+++++|..+++||.+|.||||||..+ |.+.... +.+ .-+++.|+|-+|.|+.+.+...... +
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~-l 465 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL-L 465 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh-c
Confidence 788999999999999999999999999999554 4442211 112 3456677778888887777654322 3
Q ss_pred CCeee--Ee-eccc---cccCCCCcEEEECHHHHHHHHHhcCC---CccCceEEEEeccccccccccHHHHHHHHHHhcC
Q 001758 97 GGEVG--YH-IGHS---KHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1017)
Q Consensus 97 g~~VG--y~-v~~~---~~~~~~t~Iiv~T~g~Ll~~l~~~~l---~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~ 167 (1017)
|..+- |. .+.. ..+...+.|+|||||+.+..+..+.- ++.++..+|+|||+ |..+..|.....+.+...+
T Consensus 466 ~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLR 544 (997)
T ss_pred CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhcc
Confidence 32211 11 1111 22345699999999999988764322 23367799999999 8888877777777666779
Q ss_pred CCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 001758 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1017)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1017)
|+.|.+++|||.+.. +...-... ...|++++-. .. . .+--+ ....
T Consensus 545 pdrQtvlfSatfpr~-m~~la~~v-l~~Pveiiv~-~~--s-vV~k~-----------------------------V~q~ 589 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRS-MEALARKV-LKKPVEIIVG-GR--S-VVCKE-----------------------------VTQV 589 (997)
T ss_pred hhhhhhhhhhhhhHH-HHHHHHHh-hcCCeeEEEc-cc--e-eEecc-----------------------------ceEE
Confidence 999999999997654 22222211 1134442211 10 0 00000 0000
Q ss_pred ccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC
Q 001758 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1017)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1017)
.....+..+.+..+.+++.. ... .+++||||...+.+..+.+.|. ..++....+||+.++.+|..++..|+++
T Consensus 590 v~V~~~e~eKf~kL~eLl~e---~~e--~~~tiiFv~~qe~~d~l~~~L~--~ag~~~~slHGgv~q~dR~sti~dfK~~ 662 (997)
T KOG0334|consen 590 VRVCAIENEKFLKLLELLGE---RYE--DGKTIIFVDKQEKADALLRDLQ--KAGYNCDSLHGGVDQHDRSSTIEDFKNG 662 (997)
T ss_pred EEEecCchHHHHHHHHHHHH---Hhh--cCCEEEEEcCchHHHHHHHHHH--hcCcchhhhcCCCchHHHHhHHHHHhcc
Confidence 01111122222222233332 222 4799999999999999999998 3456677799999999999999999999
Q ss_pred c-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 328 r-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
. +++|||+++++|+|+.++..||+ ||.+..+..| .+|.||+||+ +.|.||.+.++++
T Consensus 663 ~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pnh~edy----------vhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 663 VVNLLVATSVVARGLDVKELILVVN--------YDFPNHYEDY----------VHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred CceEEEehhhhhcccccccceEEEE--------cccchhHHHH----------HHHhcccccCCccceeEEEeChHH
Confidence 9 99999999999999999999999 9999988776 9999999999 5699999998843
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=1.6e-23 Score=227.95 Aligned_cols=319 Identities=17% Similarity=0.167 Sum_probs=214.6
Q ss_pred hHHHHHHHHHH-HcCCcEEEEcCCCCcHh--HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCc---cCCeeeE
Q 001758 29 MSLREKIVEKV-LENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCE---LGGEVGY 102 (1017)
Q Consensus 29 ~~~Q~eil~ai-~~~~~vII~apTGSGKT--tqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~---lg~~VGy 102 (1017)
++.|++++..+ ..+++|.|++|||+||| +|+|.++.+. ..||+.|.-.+.......+.. +..+ +.....-
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~g---ITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt 97 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGG---ITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLST 97 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCC---eEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhH
Confidence 35688887775 56789999999999999 7777776543 445666654444433333322 1111 1111111
Q ss_pred eec-----cccccCCCCcEEEECHHHHHHHHHhc----CCCccCceEEEEecccccc-ccccHHHHHHH--HHHhcCCCc
Q 001758 103 HIG-----HSKHLSERSKIVFKTAGVLLDEMRDR----GLNALKYKVIILDEVHERS-VESDLVLVCVK--QLLLKKNDL 170 (1017)
Q Consensus 103 ~v~-----~~~~~~~~t~Iiv~T~g~Ll~~l~~~----~l~l~~~~~IIIDEaHER~-~~~d~ll~~lk--~ll~~~~~l 170 (1017)
.-| .-....+.++++|.||++.......+ ...-..+++++|||||.-+ +..||...+|+ .+..+.++.
T Consensus 98 ~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~v 177 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGV 177 (641)
T ss_pred HHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCC
Confidence 101 11233567899999998864322111 1111257899999999743 33466555544 345567899
Q ss_pred eEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccc
Q 001758 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (1017)
Q Consensus 171 klIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1017)
.-+.++||.+++.-.+.|..+....||.++..|....+ .+|-......+
T Consensus 178 pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N------LFYD~~~K~~I------------------------- 226 (641)
T KOG0352|consen 178 PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN------LFYDNHMKSFI------------------------- 226 (641)
T ss_pred ceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh------hhHHHHHHHHh-------------------------
Confidence 99999999999988888887777778887777754332 22211110000
Q ss_pred cccchhHHHHHHHHHHHH-------HhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHh
Q 001758 251 AEIKPEVHKLIHDLVLHI-------HKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (1017)
Q Consensus 251 ~~~~~~~~~li~~lv~~i-------~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~ 323 (1017)
.+.+..+.+...+- ..+.....|.-||+|.|++++|+++-.|. ..++....+|+||...+|.++.+.
T Consensus 227 ----~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~--~~Gi~A~AYHAGLK~~ERTeVQe~ 300 (641)
T KOG0352|consen 227 ----TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE--IAGIPAMAYHAGLKKKERTEVQEK 300 (641)
T ss_pred ----hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh--hcCcchHHHhcccccchhHHHHHH
Confidence 01111111222111 11112235788999999999999999998 456888999999999999999999
Q ss_pred ccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 324 f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
+-++. -||+||+..++|||-|+|++||+ ||++.++- -|+|-.|||||. .+..|-..|+++
T Consensus 301 WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn~A----------gYYQESGRAGRDGk~SyCRLYYsR~ 362 (641)
T KOG0352|consen 301 WMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQNLA----------GYYQESGRAGRDGKRSYCRLYYSRQ 362 (641)
T ss_pred HhcCCCCEEEEEeccccccCCcceeEEEe--------cCchhhhH----------HHHHhccccccCCCccceeeeeccc
Confidence 87777 99999999999999999999999 99887554 559999999999 578888888887
Q ss_pred hhccc
Q 001758 402 FFGTL 406 (1017)
Q Consensus 402 ~~~~l 406 (1017)
+.+.+
T Consensus 363 D~~~i 367 (641)
T KOG0352|consen 363 DKNAL 367 (641)
T ss_pred chHHH
Confidence 76543
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.90 E-value=1e-22 Score=252.95 Aligned_cols=321 Identities=19% Similarity=0.190 Sum_probs=211.1
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC----CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeee
Q 001758 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~----~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
..+|++|.++++.+.++++|||+.+||||||..+..++++.. ..+-+++-|+..+|...++++++.... +|..|+
T Consensus 69 ~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~-~~~~v~ 147 (851)
T COG1205 69 ERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISD-LPGKVT 147 (851)
T ss_pred ccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHh-CCCcce
Confidence 459999999999999999999999999999966666666543 336688888899999999988875542 332333
Q ss_pred Eee--c---cccc---cCCCCcEEEECHHHHHHHHHhcC---C-CccCceEEEEecccc-ccccccHHHHHHHHHHhc--
Q 001758 102 YHI--G---HSKH---LSERSKIVFKTAGVLLDEMRDRG---L-NALKYKVIILDEVHE-RSVESDLVLVCVKQLLLK-- 166 (1017)
Q Consensus 102 y~v--~---~~~~---~~~~t~Iiv~T~g~Ll~~l~~~~---l-~l~~~~~IIIDEaHE-R~~~~d~ll~~lk~ll~~-- 166 (1017)
..+ + .+.. ....++|+++||.||...+.... . .+.++++|||||+|- |+...--+..++|+++..
T Consensus 148 ~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~ 227 (851)
T COG1205 148 FGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLR 227 (851)
T ss_pred eeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHh
Confidence 221 1 1111 25679999999999988655321 1 123899999999995 555555555566666544
Q ss_pred --CCCceEEEEeecc-Ch-HHHHHHHhhcCCCceeEE-EEecCCCcceeeeeEeehHHHHHHHhccCCCCcccccccccc
Q 001758 167 --KNDLRVVLMSATA-DI-TKYRDYFRDLGRGERVEV-LAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYC 241 (1017)
Q Consensus 167 --~~~lklIlmSATl-d~-~~~~~~f~~~~~~~~v~v-~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~ 241 (1017)
..++++|.+|||+ ++ +...++++.. .+. +.-...+.....- ...+.. ..
T Consensus 228 ~~~~~~q~i~~SAT~~np~e~~~~l~~~~-----f~~~v~~~g~~~~~~~~-~~~~p~-~~------------------- 281 (851)
T COG1205 228 RYGSPLQIICTSATLANPGEFAEELFGRD-----FEVPVDEDGSPRGLRYF-VRREPP-IR------------------- 281 (851)
T ss_pred ccCCCceEEEEeccccChHHHHHHhcCCc-----ceeeccCCCCCCCceEE-EEeCCc-ch-------------------
Confidence 2479999999997 44 4444555431 222 1111111111100 000000 00
Q ss_pred CCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHH----HhcCCC--CCcEEEEecCCCCHH
Q 001758 242 SGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWH----LMKPLS--SFFKVHILHSSVDTE 315 (1017)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~----~L~~~~--~~~~v~~lHs~l~~~ 315 (1017)
.... .+..........++.....+ +-++|+|+.+++.++.+.. .+.... ....+..++|++..+
T Consensus 282 -----~~~~-~~r~s~~~~~~~~~~~~~~~----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~ 351 (851)
T COG1205 282 -----ELAE-SIRRSALAELATLAALLVRN----GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHRE 351 (851)
T ss_pred -----hhhh-hcccchHHHHHHHHHHHHHc----CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHH
Confidence 0000 01111112222233323222 3589999999999998863 222222 124588899999999
Q ss_pred HHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC-CCc
Q 001758 316 QALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQ 393 (1017)
Q Consensus 316 er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~ 393 (1017)
+|.+++..|+.|+ +++++||.+|-||||.++..||..|++- .|..+++||+|||||.. .+.
T Consensus 352 er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~-----------------~s~~~~~Q~~GRaGR~~~~~l 414 (851)
T COG1205 352 ERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPG-----------------VSVLSFRQRAGRAGRRGQESL 414 (851)
T ss_pred HHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCC-----------------chHHHHHHhhhhccCCCCCce
Confidence 9999999999999 9999999999999999999999855431 15577899999999995 666
Q ss_pred EEEEech
Q 001758 394 VYRLVTK 400 (1017)
Q Consensus 394 c~rLys~ 400 (1017)
.+.++..
T Consensus 415 ~~~v~~~ 421 (851)
T COG1205 415 VLVVLRS 421 (851)
T ss_pred EEEEeCC
Confidence 6666654
No 77
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.1e-23 Score=223.41 Aligned_cols=311 Identities=19% Similarity=0.261 Sum_probs=219.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC-----CcEEEeccHHHHHHHHHHHHHhhcCCccCC----
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGG---- 98 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~-----~~IivtqPrrlaa~s~a~rva~e~~~~lg~---- 98 (1017)
.+.+|+.++..+-++.++++.+.+|+|||......++...- ..+++..|+|.+|++..+ +...+|...+.
T Consensus 49 PSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~-v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 49 PSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQK-VVRALGDHMDVSVHA 127 (397)
T ss_pred chHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHH-HHHhhhcccceeeee
Confidence 35678888888889999999999999999666555554421 256777888888888774 33433333222
Q ss_pred eeeEee-c-ccc-ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 99 EVGYHI-G-HSK-HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 99 ~VGy~v-~-~~~-~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
.+|-.. + ... .......|+++|||.++..+....+....+.++|+|||+|+ +..+|...+...+...+++.|++++
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEm-Ls~gfkdqI~~if~~lp~~vQv~l~ 206 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEM-LSRGFKDQIYDIFQELPSDVQVVLL 206 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhh-hccchHHHHHHHHHHcCcchhheee
Confidence 222111 1 111 22345799999999999998876665558999999999974 4556777776777777899999999
Q ss_pred eeccChH--HHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcccccc
Q 001758 176 SATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (1017)
Q Consensus 176 SATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1017)
|||.+.+ ...+-|.. +++.+..-.. .. +.+....-|.....+
T Consensus 207 SAT~p~~vl~vt~~f~~----~pv~i~vkk~---~l----------------------tl~gikq~~i~v~k~------- 250 (397)
T KOG0327|consen 207 SATMPSDVLEVTKKFMR----EPVRILVKKD---EL----------------------TLEGIKQFYINVEKE------- 250 (397)
T ss_pred cccCcHHHHHHHHHhcc----CceEEEecch---hh----------------------hhhheeeeeeecccc-------
Confidence 9998644 33343421 2222211100 00 000000001000000
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEE
Q 001758 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (1017)
Q Consensus 254 ~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIV 332 (1017)
... ..+..++.. -...+||++|++.+..+...|. ..++.+..+|+.|.+.+|..+++.|+.|. +|+|
T Consensus 251 --~k~----~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~--~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 251 --EKL----DTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLR--AHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred --ccc----cHHHHHHHh----hhcceEEecchhhHHHHHHHHh--hCCceEEEeecccchhhhhHHHHHhhcCCceEEe
Confidence 011 223333331 3478999999999999999996 44588999999999999999999999998 9999
Q ss_pred EcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhccc
Q 001758 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (1017)
Q Consensus 333 ATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~~l 406 (1017)
.|+.+++|+|+-.+..||+ ||.|.+.+.| .+|+||+||. .+|..+.++++++...+
T Consensus 319 ttdl~argidv~~~slvin--------ydlP~~~~~y----------ihR~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 319 TTDLLARGIDVQQVSLVVN--------YDLPARKENY----------IHRIGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred eccccccccchhhcceeee--------eccccchhhh----------hhhcccccccCCCceeeeeehHhhHHHH
Confidence 9999999999999999999 9999877666 9999999999 78999999998766544
No 78
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=4.8e-22 Score=233.80 Aligned_cols=353 Identities=16% Similarity=0.218 Sum_probs=227.7
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHH--HHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqi--p~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
.+-+..+|.+++..+..+..|+|.|+|.+|||... +..+......+.++|.|-+.+..|-.+.+++.+|. ||
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D-----vg- 368 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD-----VG- 368 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc-----cc-
Confidence 46678899999999999999999999999999543 33334455568999999888877777777775542 44
Q ss_pred eeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeecc-Ch
Q 001758 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DI 181 (1017)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATl-d~ 181 (1017)
-+..+-+..+.+.+++||+++|..++..+.--..++.+||+||+| ..-+.+-.-.+-..++...+++++|++|||. |.
T Consensus 369 LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH-YiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~ 447 (1248)
T KOG0947|consen 369 LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YINDVERGVVWEEVIIMLPRHVNFILLSATVPNT 447 (1248)
T ss_pred eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee-ecccccccccceeeeeeccccceEEEEeccCCCh
Confidence 335566778999999999999999988654335599999999999 1111111111222344557789999999996 89
Q ss_pred HHHHHHHhhcCCCceeEEEEecCCCc---ceeeeeEeeh---------HHH----HHHHhc-----cC----CC---C--
Q 001758 182 TKYRDYFRDLGRGERVEVLAIPSTNQ---RTIFQRRVSY---------LEQ----VTELLG-----VD----HG---M-- 231 (1017)
Q Consensus 182 ~~~~~~f~~~~~~~~v~v~~~p~~~~---~~~~~v~v~y---------l~~----~~~~l~-----~~----~~---~-- 231 (1017)
..|++|.+.... ..+.|+..+.++. ...|.....+ +.. ..+.++ .+ .+ .
T Consensus 448 ~EFA~WIGRtK~-K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs 526 (1248)
T KOG0947|consen 448 LEFADWIGRTKQ-KTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGS 526 (1248)
T ss_pred HHHHHHhhhccC-ceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccc
Confidence 999999987532 2233333322211 0111110000 100 011110 00 00 0
Q ss_pred ccccccccccCCCCCCccccccchhH--HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCC---------
Q 001758 232 TSELSSLRYCSGPSPSMANAEIKPEV--HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS--------- 300 (1017)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~--------- 300 (1017)
........+..+.... ..+.... ...+.+++.++....- =+++|||-+++.+++.++.|....
T Consensus 527 ~~~ggk~~~~~g~~r~---~~~~~nrr~~~~~l~lin~L~k~~l---LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKse 600 (1248)
T KOG0947|consen 527 QKRGGKTNYHNGGSRG---SGIGKNRRKQPTWLDLINHLRKKNL---LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSE 600 (1248)
T ss_pred cccCCcCCCCCCCccc---ccccccccccchHHHHHHHHhhccc---CceEEEEEccccHHHHHHHHhccCcccchhHHH
Confidence 0000001111110000 0111111 1234566666665543 489999999999998888775210
Q ss_pred ----------------C------------CcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEe
Q 001758 301 ----------------S------------FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVID 351 (1017)
Q Consensus 301 ----------------~------------~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId 351 (1017)
. .-.+..+|||+-+--++.++-.|..|- ||++||.+.++|||+|.-.+|++
T Consensus 601 V~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~ 680 (1248)
T KOG0947|consen 601 VHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFS 680 (1248)
T ss_pred HHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEee
Confidence 0 014788999999988888888998887 99999999999999999999987
Q ss_pred CCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC---CCCcEEEEechh
Q 001758 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKS 401 (1017)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~---~~G~c~rLys~~ 401 (1017)
+ +.| .|.. ....+...+|.||+|||||. ..|.++.+....
T Consensus 681 S-l~K---hDG~------efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 681 S-LRK---HDGN------EFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred e-hhh---ccCc------ceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 3 222 2322 23445788999999999999 479998887653
No 79
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=6.1e-22 Score=237.68 Aligned_cols=419 Identities=16% Similarity=0.193 Sum_probs=245.7
Q ss_pred chHHHHHHHHHHHc-CCcEEEEcCCCCcHhHHHHHHHHhc-C--C----------CcEEEeccHHHHHHHHHHHHHhhcC
Q 001758 28 VMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQFLLAE-N--M----------EPILCTQPRRFAVVAVAKMVAKGRN 93 (1017)
Q Consensus 28 i~~~Q~eil~ai~~-~~~vII~apTGSGKTtqip~~lle~-~--~----------~~IivtqPrrlaa~s~a~rva~e~~ 93 (1017)
+...|..+..+... ..++++|||||+|||-....-+++. + . -+|++..|-..+++.+...+++.+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 55678888887664 4699999999999994444444332 1 1 1799999999998887776665432
Q ss_pred CccCCeeeEeecccc---ccCCCCcEEEECHHHHHHHHHhcC--CCccCceEEEEeccccccc-cccHHHHHH----HHH
Q 001758 94 CELGGEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRG--LNALKYKVIILDEVHERSV-ESDLVLVCV----KQL 163 (1017)
Q Consensus 94 ~~lg~~VGy~v~~~~---~~~~~t~Iiv~T~g~Ll~~l~~~~--l~l~~~~~IIIDEaHER~~-~~d~ll~~l----k~l 163 (1017)
.+|..|+-..+... .--..|+|+|+||+...-.-+.++ -...-|+++||||+|--.- ....+..+. ++.
T Consensus 390 -~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 390 -PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred -ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 45666665443322 224679999999998743333211 1122689999999993111 112233332 222
Q ss_pred HhcCCCceEEEEeecc-ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccC
Q 001758 164 LLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (1017)
Q Consensus 164 l~~~~~lklIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (1017)
.......+++++|||+ |-+....|+.... -.+++. +.+..+-++...|..
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~----~glf~f-------------------------d~syRpvPL~qq~Ig 519 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDP----EGLFYF-------------------------DSSYRPVPLKQQYIG 519 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCc----cccccc-------------------------CcccCcCCccceEec
Confidence 2334578999999997 5555666553210 000000 000011111111111
Q ss_pred CCCCCccccccchhHHHHHHHHHH-HHHhhCCCCCCCEEEEeCCHHHHHHHHHHhc--------------CC--------
Q 001758 243 GPSPSMANAEIKPEVHKLIHDLVL-HIHKNESDIEKSILVFLPTYYALEQQWHLMK--------------PL-------- 299 (1017)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~-~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~--------------~~-------- 299 (1017)
..... .. ....+..+.+. .+..... .++||||+.++++.-+.++.++ ..
T Consensus 520 i~ek~-~~-----~~~qamNe~~yeKVm~~ag--k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilr 591 (1674)
T KOG0951|consen 520 ITEKK-PL-----KRFQAMNEACYEKVLEHAG--KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILR 591 (1674)
T ss_pred cccCC-ch-----HHHHHHHHHHHHHHHHhCC--CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhh
Confidence 10000 00 00112222221 1222222 4799999999998877666554 00
Q ss_pred -------------CCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCC
Q 001758 300 -------------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (1017)
Q Consensus 300 -------------~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~ 365 (1017)
.-.+.+.++|+||+..+|..+++.|+.|. +|+|+|.++++|+++|+-.++|- ....||+..+
T Consensus 592 tea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg 667 (1674)
T KOG0951|consen 592 TEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKG 667 (1674)
T ss_pred hhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCcccC
Confidence 01256889999999999999999999998 99999999999999999999984 2345888775
Q ss_pred ccccceeecCHhhHHHhcCCCCCCC-----CCcEEEEechhhh-ccccccCCc--hhhhccHHHHHHHHHhhccccCCCh
Q 001758 366 IDSAELVWVSQSQAEQRRGRTGRTC-----DGQVYRLVTKSFF-GTLEDHECP--AILRLSLRLQVLLICCAESKAISDP 437 (1017)
Q Consensus 366 ~~~l~~~~iSkasa~QR~GRAGR~~-----~G~c~rLys~~~~-~~l~~~~~P--EI~r~~L~~~vL~l~~~~~~~l~~~ 437 (1017)
.- ..+|.-+.+||.|||||.+ .|+.+.=+++-.| -++...+.| +-.-+.|...+-.=..+|...+.+.
T Consensus 668 ~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~ 743 (1674)
T KOG0951|consen 668 RW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDA 743 (1674)
T ss_pred cc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHH
Confidence 32 3468889999999999983 4555555555433 233222222 2222222221111111111112222
Q ss_pred HHhhh------hcc-------------CCC----CCchHHHHHHHHHHhhhcccCCCCCccccccchhhhcccCCChH
Q 001758 438 KVLLQ------KAL-------------DPP----YPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFD 492 (1017)
Q Consensus 438 ~~~l~------~~l-------------dpP----~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPldp~ 492 (1017)
..++. +.+ |++ -.+.+..|...|.+.|.|--+...|..+.|.+|++.+.+.+.-.
T Consensus 744 ~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~ 821 (1674)
T KOG0951|consen 744 VDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHG 821 (1674)
T ss_pred HhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecc
Confidence 11110 111 111 12458889999999999865434577789999999999988644
No 80
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=7.7e-22 Score=241.70 Aligned_cols=358 Identities=14% Similarity=0.161 Sum_probs=234.2
Q ss_pred ccCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhH----HHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 001758 20 SPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSS----QVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1017)
Q Consensus 20 ~~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTt----qip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~ 95 (1017)
....-.+.+.+.|++++..|..+..|+|+||||||||. ++.+.+.+ .+++++|.|-+.+..|....+..++|.-
T Consensus 112 ~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 112 PAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred HHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 33344688999999999999999999999999999993 33333332 3469999999999999999988877633
Q ss_pred cCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 96 LGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 96 lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
...||.. ..+-..++++.++|||+++|.+++..+...+.++.+||+||+|- .-+.+-...+-..++....++++|+|
T Consensus 190 -~~~vGL~-TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy-i~D~eRG~VWEE~Ii~lP~~v~~v~L 266 (1041)
T COG4581 190 -ADMVGLM-TGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY-IGDRERGVVWEEVIILLPDHVRFVFL 266 (1041)
T ss_pred -hhhccce-ecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeee-ccccccchhHHHHHHhcCCCCcEEEE
Confidence 3345654 34445678999999999999998887766666999999999992 22222223333345556677899999
Q ss_pred eecc-ChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHH--HHHHhccCCC--Cc-----cccccccccCCCC
Q 001758 176 SATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQ--VTELLGVDHG--MT-----SELSSLRYCSGPS 245 (1017)
Q Consensus 176 SATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~--~~~~l~~~~~--~~-----~~~~~~~~~~~~~ 245 (1017)
|||+ |++.|..|+.... ..++.+++.+.++....+ ++..+ +...+..... .. .......+.....
T Consensus 267 SATv~N~~EF~~Wi~~~~-~~~~~vv~t~~RpvPL~~----~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~ 341 (1041)
T COG4581 267 SATVPNAEEFAEWIQRVH-SQPIHVVSTEHRPVPLEH----FVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRE 341 (1041)
T ss_pred eCCCCCHHHHHHHHHhcc-CCCeEEEeecCCCCCeEE----EEecCCceeeeecccccchhhcchhhhhhhhccchhccc
Confidence 9997 9999999998653 455666665554332211 11111 0000000000 00 0000000000000
Q ss_pred --C----Ccccc----ccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCC----------------
Q 001758 246 --P----SMANA----EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL---------------- 299 (1017)
Q Consensus 246 --~----~~~~~----~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~---------------- 299 (1017)
. .+... ...........+++.++.... .-++++|+-++..|+..+..+...
T Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~---~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii 418 (1041)
T COG4581 342 TDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDN---LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREII 418 (1041)
T ss_pred cCccccccccccccccCCcccccccchHHHhhhhhhc---CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHH
Confidence 0 00000 000000001123344443332 358999999999988777655410
Q ss_pred ----------CCCc-------------EEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCcc
Q 001758 300 ----------SSFF-------------KVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (1017)
Q Consensus 300 ----------~~~~-------------~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~ 355 (1017)
..++ .+..+|+||=+..+..++..|..|- ||++||.+.+.|+++|.-++|+ +++.
T Consensus 419 ~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~ 497 (1041)
T COG4581 419 DHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLS 497 (1041)
T ss_pred HHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeE
Confidence 0001 2557899999999999999999988 9999999999999999888777 4444
Q ss_pred ceeeecCCCCccccceeecCHhhHHHhcCCCCCC---CCCcEEEEech
Q 001758 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTK 400 (1017)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~---~~G~c~rLys~ 400 (1017)
| || .-...|+|..+|.|+.|||||. ..|.++.+...
T Consensus 498 K---~d------G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 498 K---FD------GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred E---ec------CCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 4 44 2346789999999999999999 36999888543
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.88 E-value=1.1e-21 Score=250.62 Aligned_cols=292 Identities=19% Similarity=0.169 Sum_probs=180.0
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEe
Q 001758 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~l--le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~ 103 (1017)
...+++|.++++.+..+++++++||||||||+.+...+ +.....+++++.|++.+|.|+++++.... ...+..+...
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~-~~~~~~~~~~ 157 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFG-EKVGCGVKIL 157 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHh-hhcCceEEEE
Confidence 46799999999999999999999999999995332221 22223578888999999999998887643 2333222211
Q ss_pred eccc-----------cc-cCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEecccccccc-----------ccHH----
Q 001758 104 IGHS-----------KH-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLV---- 156 (1017)
Q Consensus 104 v~~~-----------~~-~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~-----------~d~l---- 156 (1017)
.+.. .. .....+|+|+|||.|.+.+. .+...++++|||||||. .+. .+|.
T Consensus 158 ~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~-~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 158 YYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDA-VLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHH-hhhcccchhhHHHhCCCCHHHH
Confidence 1111 01 12468999999999998775 23344799999999994 332 1221
Q ss_pred HHHHHHHHh---------------------cCCCceEEEEeeccChHHHH-HHHhhcCCCceeEEEEecCCCcceeeeeE
Q 001758 157 LVCVKQLLL---------------------KKNDLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRR 214 (1017)
Q Consensus 157 l~~lk~ll~---------------------~~~~lklIlmSATld~~~~~-~~f~~~~~~~~v~v~~~p~~~~~~~~~v~ 214 (1017)
..+++.+.. ...+.+++++|||+++.... .+|..+- .+.+ ... ....-.+.
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll---~~~v---~~~-~~~~rnI~ 307 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL---GFEV---GSP-VFYLRNIV 307 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc---eEEe---cCc-ccccCCce
Confidence 111111100 01157899999999754332 3343210 0111 100 00000000
Q ss_pred eehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHH---HHH
Q 001758 215 VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA---LEQ 291 (1017)
Q Consensus 215 v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~---ie~ 291 (1017)
..| .... ...+.+.+++. .. ++.+||||++... ++.
T Consensus 308 ~~y-------------------------------i~~~---~k~~~L~~ll~----~l---~~~~LIFv~t~~~~~~ae~ 346 (1176)
T PRK09401 308 DSY-------------------------------IVDE---DSVEKLVELVK----RL---GDGGLIFVPSDKGKEYAEE 346 (1176)
T ss_pred EEE-------------------------------EEcc---cHHHHHHHHHH----hc---CCCEEEEEecccChHHHHH
Confidence 000 0000 11122223322 21 2478999999776 999
Q ss_pred HHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEE----cCcccccccCCC-eeEEEeCCccceeeecCCCC
Q 001758 292 QWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQVFWDVNRK 365 (1017)
Q Consensus 292 l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVA----TniaetGIdIP~-V~~VId~G~~k~~~yd~~~~ 365 (1017)
+++.|.. .++.+..+||+| + ..++.|++|+ +|||| ||++++|||+|+ |+|||+.|.++.++ ... .
T Consensus 347 l~~~L~~--~gi~v~~~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~-~~~-~ 417 (1176)
T PRK09401 347 LAEYLED--LGINAELAISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF-SLE-E 417 (1176)
T ss_pred HHHHHHH--CCCcEEEEeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE-ecc-c
Confidence 9999985 458999999999 2 2359999999 99999 699999999999 89999965555432 111 1
Q ss_pred ccccceeecCHhhHHHhcCCCCC
Q 001758 366 IDSAELVWVSQSQAEQRRGRTGR 388 (1017)
Q Consensus 366 ~~~l~~~~iSkasa~QR~GRAGR 388 (1017)
-+ .+.+|.||+-.
T Consensus 418 ~~----------~~~~~~~r~~~ 430 (1176)
T PRK09401 418 EL----------APPFLLLRLLS 430 (1176)
T ss_pred cc----------cCHHHHHHHHh
Confidence 12 23788888753
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.88 E-value=2.3e-21 Score=238.21 Aligned_cols=325 Identities=17% Similarity=0.138 Sum_probs=198.0
Q ss_pred cCCCCchHHHHHHHHHHHc---CCcEEEEcCCCCcHhHHHHHHHH---hcCCCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 001758 23 FSSLPVMSLREKIVEKVLE---NRVTLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~ai~~---~~~vII~apTGSGKTtqip~~ll---e~~~~~IivtqPrrlaa~s~a~rva~e~~~~l 96 (1017)
.....+++.|.++++.+.+ ++++++.|+||||||..+...+. ..+ +.++++.|++.++.++.+++.+.++..+
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~fg~~v 218 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARFGAPV 218 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhCCCE
Confidence 3455789999999999987 48899999999999966655443 333 4688888999999999999988766443
Q ss_pred CCeeeEeec------cccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHH----HHHHHHHhc
Q 001758 97 GGEVGYHIG------HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL----VCVKQLLLK 166 (1017)
Q Consensus 97 g~~VGy~v~------~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll----~~lk~ll~~ 166 (1017)
....|..-. +........+|+|+|++.+. ..+.++++|||||+|+-+...+-.. .-+..+...
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~ 291 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAK 291 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhh
Confidence 222221100 01112456899999998764 2345899999999996443322110 011122234
Q ss_pred CCCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeee-eEeehHHHHHHHhccCCCCccccccccccCCCC
Q 001758 167 KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQ-RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (1017)
Q Consensus 167 ~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~-v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (1017)
..+.++|++|||++.+.+.....+ ....+..+........| +.+.-+.+ ... .
T Consensus 292 ~~~~~~il~SATps~~s~~~~~~g-----~~~~~~l~~r~~~~~~p~v~~id~~~---~~~----------------~-- 345 (679)
T PRK05580 292 LENIPVVLGSATPSLESLANAQQG-----RYRLLRLTKRAGGARLPEVEIIDMRE---LLR----------------G-- 345 (679)
T ss_pred ccCCCEEEEcCCCCHHHHHHHhcc-----ceeEEEeccccccCCCCeEEEEechh---hhh----------------h--
Confidence 567899999999987776654422 12333333221111111 11110000 000 0
Q ss_pred CCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHH--------------------------------------
Q 001758 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY-------------------------------------- 287 (1017)
Q Consensus 246 ~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~-------------------------------------- 287 (1017)
. ....+.....+.+.+.+ . .+.++|||+|.+.
T Consensus 346 ~--~~~~ls~~l~~~i~~~l----~----~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg 415 (679)
T PRK05580 346 E--NGSFLSPPLLEAIKQRL----E----RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCG 415 (679)
T ss_pred c--ccCCCCHHHHHHHHHHH----H----cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCc
Confidence 0 00011122222222211 1 1347888877521
Q ss_pred ----------------------HHHHHHHHhcCCCCCcEEEEecCCCC--HHHHHHHHHhccCCc-EEEEEcCccccccc
Q 001758 288 ----------------------ALEQQWHLMKPLSSFFKVHILHSSVD--TEQALMAMKICKSHR-KVILATNIAESSVT 342 (1017)
Q Consensus 288 ----------------------~ie~l~~~L~~~~~~~~v~~lHs~l~--~~er~~i~~~f~~gr-kVIVATniaetGId 342 (1017)
.++.+.+.|....++..+..+|+++. .++++.+++.|+.++ +|||+|++++.|+|
T Consensus 416 ~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d 495 (679)
T PRK05580 416 YQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHD 495 (679)
T ss_pred CCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCC
Confidence 34556666665556778999999986 456888999999988 99999999999999
Q ss_pred CCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEE
Q 001758 343 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (1017)
Q Consensus 343 IP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rL 397 (1017)
+|+|..|+-.. .|.......+....-.-+.+.|++|||||. .+|.++..
T Consensus 496 ~p~v~lV~il~------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 496 FPNVTLVGVLD------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred CCCcCEEEEEc------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 99999985200 343333322211111235579999999996 68888843
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.88 E-value=4.7e-21 Score=225.02 Aligned_cols=331 Identities=18% Similarity=0.178 Sum_probs=198.1
Q ss_pred cCCCCchHHHHHHHHHHHc----CCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 001758 23 FSSLPVMSLREKIVEKVLE----NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~ai~~----~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~ 98 (1017)
.....+++||+++++++.+ ++..+|++|||+|||......+.+.... ++++.|++.++.|.+++.....+.. .
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~-~Lvlv~~~~L~~Qw~~~~~~~~~~~--~ 108 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS-TLVLVPTKELLDQWAEALKKFLLLN--D 108 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC-EEEEECcHHHHHHHHHHHHHhcCCc--c
Confidence 4457799999999999998 8999999999999998887777665544 8888999999999888877765543 2
Q ss_pred eeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCce-EEEEee
Q 001758 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR-VVLMSA 177 (1017)
Q Consensus 99 ~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lk-lIlmSA 177 (1017)
.+|..-.......+ ..|+|+|.+++.+.-....+...++++||+||||+... +.. +.+........ +++|||
T Consensus 109 ~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a--~~~----~~~~~~~~~~~~~LGLTA 181 (442)
T COG1061 109 EIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA--PSY----RRILELLSAAYPRLGLTA 181 (442)
T ss_pred ccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc--HHH----HHHHHhhhcccceeeecc
Confidence 23322112222222 57999999999885211112223799999999995332 222 22333333344 999999
Q ss_pred cc---ChHHHHHHHhhcCCCceeEEEEecCC---Ccc-----eeeeeEeehHHHHHHHhccCCCCccccccccccCCCCC
Q 001758 178 TA---DITKYRDYFRDLGRGERVEVLAIPST---NQR-----TIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1017)
Q Consensus 178 Tl---d~~~~~~~f~~~~~~~~v~v~~~p~~---~~~-----~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1017)
|+ |......++..+|. .+...+.. ..+ ..+.+.+.+.++..................... ....
T Consensus 182 Tp~R~D~~~~~~l~~~~g~----~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 256 (442)
T COG1061 182 TPEREDGGRIGDLFDLIGP----IVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-LRAE 256 (442)
T ss_pred CceeecCCchhHHHHhcCC----eEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-hhHH
Confidence 96 43455566655431 11111110 001 111111111111100000000000000000000 0000
Q ss_pred CccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccC
Q 001758 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (1017)
Q Consensus 247 ~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1017)
. ....+.......+...-..+.... .+.+++||+....+++.++..+.... . +..+.+..+..+|..+++.|+.
T Consensus 257 ~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~--~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 257 N-EARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPG--I-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred H-HHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCC--c-eEEEECCCCHHHHHHHHHHHHc
Confidence 0 000000000111111111122111 24689999999999999999997433 3 7888999999999999999998
Q ss_pred Cc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCC
Q 001758 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDG 392 (1017)
Q Consensus 327 gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G 392 (1017)
+. ++|+++.++.+|+|+|++.++|- -.+. -|+..+.||+||.-|..+|
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~--------~~~t----------~S~~~~~Q~lGR~LR~~~~ 379 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLII--------LRPT----------GSRRLFIQRLGRGLRPAEG 379 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEE--------eCCC----------CcHHHHHHHhhhhccCCCC
Confidence 77 99999999999999999999995 2221 1677889999999996433
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.87 E-value=3.1e-21 Score=251.22 Aligned_cols=315 Identities=15% Similarity=0.183 Sum_probs=190.1
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHH--HHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCC-ccCCeeeEe
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNC-ELGGEVGYH 103 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtq--ip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~-~lg~~VGy~ 103 (1017)
..++.|.++++.+.++++++++||||||||+. ++...+.....+++++.|++.++.|+++.+...... .++..+.+.
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~ 158 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYY 158 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEE
Confidence 57899999999999999999999999999972 222222222346888889999999998887663211 122223222
Q ss_pred eccc---c-------ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEecccccccc-----------ccHHHHHHH-
Q 001758 104 IGHS---K-------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLVCVK- 161 (1017)
Q Consensus 104 v~~~---~-------~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~-----------~d~ll~~lk- 161 (1017)
.+.. . ....+.+|+|+|||.|.+.+..- . ..++++|||||||. .+. .+|...+..
T Consensus 159 ~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~~ 235 (1638)
T PRK14701 159 HSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIEK 235 (1638)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECcee-ccccccccchhhhcCCChHHHHHH
Confidence 2211 0 11345899999999988765532 1 14799999999994 322 244333322
Q ss_pred ---HH---------------------Hhc-CCCce-EEEEeeccCh-HHHHHHHhhcCCCceeEEEEecCCCcceeeeeE
Q 001758 162 ---QL---------------------LLK-KNDLR-VVLMSATADI-TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRR 214 (1017)
Q Consensus 162 ---~l---------------------l~~-~~~lk-lIlmSATld~-~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~ 214 (1017)
.+ +.. ....+ ++++|||+.+ ....++|... .. +.+..... ..-.+.
T Consensus 236 ~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~-----l~-f~v~~~~~-~lr~i~ 308 (1638)
T PRK14701 236 AWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYREL-----LG-FEVGSGRS-ALRNIV 308 (1638)
T ss_pred HHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcC-----eE-EEecCCCC-CCCCcE
Confidence 11 111 12234 6779999875 3444555431 11 11111100 000000
Q ss_pred eehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHH---HHH
Q 001758 215 VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA---LEQ 291 (1017)
Q Consensus 215 v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~---ie~ 291 (1017)
..|+ .. .......+.+++ ... +..+||||++++. +++
T Consensus 309 ~~yi-------------------------------~~--~~~~k~~L~~ll----~~~---g~~gIVF~~t~~~~e~ae~ 348 (1638)
T PRK14701 309 DVYL-------------------------------NP--EKIIKEHVRELL----KKL---GKGGLIFVPIDEGAEKAEE 348 (1638)
T ss_pred EEEE-------------------------------EC--CHHHHHHHHHHH----HhC---CCCeEEEEeccccchHHHH
Confidence 0000 00 001111222222 222 2478999999875 488
Q ss_pred HHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEc----CcccccccCCC-eeEEEeCCccceeeecCCCC
Q 001758 292 QWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT----NIAESSVTIPK-VAYVIDSCRSLQVFWDVNRK 365 (1017)
Q Consensus 292 l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVAT----niaetGIdIP~-V~~VId~G~~k~~~yd~~~~ 365 (1017)
+++.|.. .++.+..+||+ |...++.|+.|+ +||||| ++|++|||+|+ |+|||+.|.+|.++ +
T Consensus 349 la~~L~~--~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~-----~ 416 (1638)
T PRK14701 349 IEKYLLE--DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRF-----R 416 (1638)
T ss_pred HHHHHHH--CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCc-----c
Confidence 9999984 46899999995 778899999999 999999 59999999999 99999955544221 2
Q ss_pred ccccceee---cCHhhHHHhcCCCCCCC-CCcEEEEechhhh
Q 001758 366 IDSAELVW---VSQSQAEQRRGRTGRTC-DGQVYRLVTKSFF 403 (1017)
Q Consensus 366 ~~~l~~~~---iSkasa~QR~GRAGR~~-~G~c~rLys~~~~ 403 (1017)
++.+.... .......++.|||||.+ ++.++..+..++.
T Consensus 417 ~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~ 458 (1638)
T PRK14701 417 VDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDV 458 (1638)
T ss_pred hhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHH
Confidence 22221110 00233477889999984 6777655554443
No 85
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=8.7e-22 Score=242.97 Aligned_cols=313 Identities=16% Similarity=0.191 Sum_probs=216.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHh--HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeec
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG 105 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKT--tqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~ 105 (1017)
.++-|.+++.+++.|+++.|.+|||.||| +|+|.++... ..+|+.|...+.......+. ..+......-+-+..
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g---itvVISPL~SLm~DQv~~L~-~~~I~a~~L~s~q~~ 340 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG---VTVVISPLISLMQDQVTHLS-KKGIPACFLSSIQTA 340 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC---ceEEeccHHHHHHHHHHhhh-hcCcceeeccccccH
Confidence 45679999999999999999999999999 8999888765 56777887766655544442 222221111111101
Q ss_pred ------cccccC--CCCcEEEECHHHHHHHHH--hcCCCccC---ceEEEEecccccc-ccccHHHHHHH--HHHhcCCC
Q 001758 106 ------HSKHLS--ERSKIVFKTAGVLLDEMR--DRGLNALK---YKVIILDEVHERS-VESDLVLVCVK--QLLLKKND 169 (1017)
Q Consensus 106 ------~~~~~~--~~t~Iiv~T~g~Ll~~l~--~~~l~l~~---~~~IIIDEaHER~-~~~d~ll~~lk--~ll~~~~~ 169 (1017)
+..... ...+|+|.||+++..... .....+.. +..+||||||.-+ +..||...+.+ .+..+.+.
T Consensus 341 ~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~ 420 (941)
T KOG0351|consen 341 AERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG 420 (941)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC
Confidence 111112 367899999999875421 11111223 7899999999744 33466555533 34455677
Q ss_pred ceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 001758 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1017)
Q Consensus 170 lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1017)
..+|.+|||.....-.+....++...+. ++.....+.+..+.|... ..
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k-----------------------------~~-- 468 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPK-----------------------------TD-- 468 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEec-----------------------------cC--
Confidence 8999999999888778888776544332 211111111222222110 00
Q ss_pred ccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-
Q 001758 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1017)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1017)
.+....+...+....+ .+.+||+|.++.+++.+...|+..+ +....+|+||+..+|..+.+.|-.+.
T Consensus 469 --------~~~~~~~~~~~~~~~~--~~s~IIYC~sr~~ce~vs~~L~~~~--~~a~~YHAGl~~~~R~~Vq~~w~~~~~ 536 (941)
T KOG0351|consen 469 --------KDALLDILEESKLRHP--DQSGIIYCLSRKECEQVSAVLRSLG--KSAAFYHAGLPPKERETVQKAWMSDKI 536 (941)
T ss_pred --------ccchHHHHHHhhhcCC--CCCeEEEeCCcchHHHHHHHHHHhc--hhhHhhhcCCCHHHHHHHHHHHhcCCC
Confidence 0111122223333333 4689999999999999999998654 78889999999999999999998877
Q ss_pred EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhhccc
Q 001758 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (1017)
Q Consensus 329 kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~~~l 406 (1017)
+|||||=..++|||.|||+.||+ |..|..++.| +|-+|||||. .+-.|..+|+-.++..+
T Consensus 537 ~VivATVAFGMGIdK~DVR~ViH--------~~lPks~E~Y----------YQE~GRAGRDG~~s~C~l~y~~~D~~~l 597 (941)
T KOG0351|consen 537 RVIVATVAFGMGIDKPDVRFVIH--------YSLPKSFEGY----------YQEAGRAGRDGLPSSCVLLYGYADISEL 597 (941)
T ss_pred eEEEEEeeccCCCCCCceeEEEE--------CCCchhHHHH----------HHhccccCcCCCcceeEEecchhHHHHH
Confidence 99999999999999999999999 8888877777 9999999999 58999999998776543
No 86
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.87 E-value=1.5e-20 Score=226.87 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=89.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCcEEEEEcCcccccccCC---------Ce
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIP---------KV 346 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVIVATniaetGIdIP---------~V 346 (1017)
+.++||||++.+.++.+...|... ++....+||.+..+++..+.++++.| +|+||||+|++|+||| ++
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~~--gi~~~~L~a~~~~~E~~ii~~ag~~g-~VlIATdmAgRGtDI~l~~~v~~~GGL 500 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLRE--GIPHNLLNAQNAAKEAQIIAEAGQKG-AVTVATSMAGRGTDIKLGKGVAELGGL 500 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCCChHHHHHHHHHcCCCC-eEEEEccccccccCCCCCccccccCCe
Confidence 468999999999999999999853 57888999999988887776666554 8999999999999999 99
Q ss_pred eEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 347 AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 347 ~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
.+|+. |+++.. +.. .||+||+||. .+|.++.+++.++
T Consensus 501 ~vIit--------~~~ps~----------rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 501 AVIGT--------ERMENS----------RVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EEEEe--------cCCCCc----------HHH-HHhhhcccCCCCceeEEEEEccch
Confidence 99998 888753 222 8999999999 5899999998643
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.5e-20 Score=199.33 Aligned_cols=301 Identities=20% Similarity=0.278 Sum_probs=196.9
Q ss_pred chHHHHHH----HHHHHcCCcEEEEcCCCCcHh---HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcC-CccCCe
Q 001758 28 VMSLREKI----VEKVLENRVTLIVGETGCGKS---SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-CELGGE 99 (1017)
Q Consensus 28 i~~~Q~ei----l~ai~~~~~vII~apTGSGKT---tqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~-~~lg~~ 99 (1017)
+++.|+.+ +..+.+.+.++|.|-||+||| ++.....++.| .+|.+..||--.+..++.|+.+-+. +.+.-.
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 45666655 445567899999999999999 44444555554 4789999999999999999998654 433222
Q ss_pred eeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHH-HHHHHhcCCCceEEEEeec
Q 001758 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVC-VKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 100 VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~-lk~ll~~~~~lklIlmSAT 178 (1017)
. +..+..- .+.++|+|.-.|++.-. .++++||||++---...|-.+.+ ++.. +...--+|.||||
T Consensus 177 y----g~S~~~f-r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTAT 242 (441)
T COG4098 177 Y----GDSDSYF-RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTAT 242 (441)
T ss_pred e----cCCchhc-cccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecC
Confidence 1 2222222 38899999999988543 68999999999655555655443 3332 3445678999999
Q ss_pred cChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEee-hHHHHHHHhccCCCCccccccccccCCCCCCccccccchhH
Q 001758 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVS-YLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1017)
Q Consensus 179 ld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~-yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1017)
...+.-.+.... ....+.+|.+-.+...++.-+ +...-. .......+..
T Consensus 243 p~k~l~r~~~~g-----~~~~~klp~RfH~~pLpvPkf~w~~~~~-----------------------k~l~r~kl~~-- 292 (441)
T COG4098 243 PTKKLERKILKG-----NLRILKLPARFHGKPLPVPKFVWIGNWN-----------------------KKLQRNKLPL-- 292 (441)
T ss_pred ChHHHHHHhhhC-----CeeEeecchhhcCCCCCCCceEEeccHH-----------------------HHhhhccCCH--
Confidence 875444444332 123334444322222221110 000000 0000011111
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATni 336 (1017)
++...+..... .+.++|||+|+.+..++++..|+...+...+...|+.- ..|.+..+.|++|. +++++|.|
T Consensus 293 -----kl~~~lekq~~-~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTI 364 (441)
T COG4098 293 -----KLKRWLEKQRK-TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTI 364 (441)
T ss_pred -----HHHHHHHHHHh-cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeeh
Confidence 23333333222 25699999999999999999997656667788888763 45777788999999 99999999
Q ss_pred ccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC---CCCcEEEE
Q 001758 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRL 397 (1017)
Q Consensus 337 aetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~---~~G~c~rL 397 (1017)
+|+|+|+|+|+++|- +.... .+ |+++..|.+||+||. ..|.++-+
T Consensus 365 LERGVTfp~vdV~Vl---------gaeh~--vf-----TesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 365 LERGVTFPNVDVFVL---------GAEHR--VF-----TESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred hhcccccccceEEEe---------cCCcc--cc-----cHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 999999999999883 33221 23 788899999999998 34765544
No 88
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=7.6e-22 Score=215.49 Aligned_cols=311 Identities=23% Similarity=0.258 Sum_probs=213.9
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC------CcEEEeccHHHHHHHHHHHHHhh-cCCcc--CC
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM------EPILCTQPRRFAVVAVAKMVAKG-RNCEL--GG 98 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~------~~IivtqPrrlaa~s~a~rva~e-~~~~l--g~ 98 (1017)
.+++|.+.++.|+++++++-.+-||||||..+...+++... -+-++..|+|.+|.|.-+.+++. .+..+ .-
T Consensus 44 ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~ 123 (529)
T KOG0337|consen 44 PTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSL 123 (529)
T ss_pred CCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhh
Confidence 35778888999999999999999999999665555544321 14455556666666666666542 11111 11
Q ss_pred eeeEeeccc---cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 99 EVGYHIGHS---KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 99 ~VGy~v~~~---~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
.+|+. ..+ .....+++|+++|||+++.....-.+.+..+.+||+||++ |.....|...+-+.+-+...+.+.++|
T Consensus 124 ~~ggD-~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTllf 201 (529)
T KOG0337|consen 124 LVGGD-SIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTLLF 201 (529)
T ss_pred hcccc-hHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEEEE
Confidence 23332 112 2346789999999999998766555667799999999999 888887777776777677778899999
Q ss_pred eeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccch
Q 001758 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1017)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1017)
|||++.. +.++ ...|...|+-|. +.... + +.+.+. ..+.... ..
T Consensus 202 Satlp~~-lv~f-akaGl~~p~lVR-ldvet-------k------ise~lk-----------~~f~~~~---------~a 245 (529)
T KOG0337|consen 202 SATLPRD-LVDF-AKAGLVPPVLVR-LDVET-------K------ISELLK-----------VRFFRVR---------KA 245 (529)
T ss_pred eccCchh-hHHH-HHccCCCCceEE-eehhh-------h------cchhhh-----------hheeeec---------cH
Confidence 9998744 2222 223444444332 11100 0 000000 0000000 00
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEc
Q 001758 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (1017)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVAT 334 (1017)
+.. ..+.++....- ...+.+||++|..+++.+...|+. .++....++|.|+++-|..-.+.|+.++ .++|.|
T Consensus 246 ~K~----aaLl~il~~~~-~~~~t~vf~~tk~hve~~~~ll~~--~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvT 318 (529)
T KOG0337|consen 246 EKE----AALLSILGGRI-KDKQTIVFVATKHHVEYVRGLLRD--FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVT 318 (529)
T ss_pred HHH----HHHHHHHhccc-cccceeEEecccchHHHHHHHHHh--cCCCccccccccChHhhhhccccccCCccceEEEe
Confidence 011 12222222211 135799999999999999999984 3467788899999999998899999999 999999
Q ss_pred CcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC-CCcEEEEechh
Q 001758 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYRLVTKS 401 (1017)
Q Consensus 335 niaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rLys~~ 401 (1017)
++|.+|+|||...-||+ ||.+..-..+ .+|.||+.|.+ .|..|-++..+
T Consensus 319 dvaaRG~diplldnvin--------yd~p~~~klF----------vhRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 319 DVAARGLDIPLLDNVIN--------YDFPPDDKLF----------VHRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred hhhhccCCCcccccccc--------ccCCCCCceE----------EEEecchhhccccceEEEEEecc
Confidence 99999999999999999 9998877777 89999999984 79999998764
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=1.6e-20 Score=219.41 Aligned_cols=302 Identities=21% Similarity=0.250 Sum_probs=206.9
Q ss_pred CCCchHHHHHHHHHHHcC------CcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 001758 25 SLPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~------~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva~e~~~~l 96 (1017)
.+.++..|++++.-|..+ -+=++.|+-|||||......++.. ......+..|++++|.|.+..+++.+. ++
T Consensus 260 PF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~-~~ 338 (677)
T COG1200 260 PFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLE-PL 338 (677)
T ss_pred CCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhh-hc
Confidence 355889999999999753 255899999999996555554432 223678889999999999999888665 45
Q ss_pred CCeeeEeeccc----------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc
Q 001758 97 GGEVGYHIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK 166 (1017)
Q Consensus 97 g~~VGy~v~~~----------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~ 166 (1017)
|-.|++-++.. ...+...+|+|+|...+. +...+.++.+|||||=|.-++. --..+..+
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQHRFGV~------QR~~L~~K 407 (677)
T COG1200 339 GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQHRFGVH------QRLALREK 407 (677)
T ss_pred CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEeccccccHH------HHHHHHHh
Confidence 55566654422 223567999999986553 3445669999999999942222 12233344
Q ss_pred CC-CceEEEEeeccChHHHH-HHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCC
Q 001758 167 KN-DLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (1017)
Q Consensus 167 ~~-~lklIlmSATld~~~~~-~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~ 244 (1017)
.. ...+++||||+-+..++ ..|+++ ++..+...+.++. |+....+
T Consensus 408 G~~~Ph~LvMTATPIPRTLAlt~fgDl------dvS~IdElP~GRk-pI~T~~i-------------------------- 454 (677)
T COG1200 408 GEQNPHVLVMTATPIPRTLALTAFGDL------DVSIIDELPPGRK-PITTVVI-------------------------- 454 (677)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHhccc------cchhhccCCCCCC-ceEEEEe--------------------------
Confidence 45 57999999997555554 556553 2222222111111 1111110
Q ss_pred CCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHH--------HHHHHHHhcCCCCCcEEEEecCCCCHHH
Q 001758 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA--------LEQQWHLMKPLSSFFKVHILHSSVDTEQ 316 (1017)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~--------ie~l~~~L~~~~~~~~v~~lHs~l~~~e 316 (1017)
.....+.+.+.+.+. +. .+.++-|.||-.++ ++++++.|....+++.|..+||.|+.++
T Consensus 455 -----~~~~~~~v~e~i~~e---i~-----~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~e 521 (677)
T COG1200 455 -----PHERRPEVYERIREE---IA-----KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAE 521 (677)
T ss_pred -----ccccHHHHHHHHHHH---HH-----cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHH
Confidence 001112222222222 21 14688999997654 5567777776667889999999999999
Q ss_pred HHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcE
Q 001758 317 ALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQV 394 (1017)
Q Consensus 317 r~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c 394 (1017)
+.++++.|++++ +|+|||.+.|-|||+|+.++.|- +|+.+ + .-|+..|-+||.||- .++.|
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AER----F-----GLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAER----F-----GLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echhh----h-----hHHHHHHhccccCCCCcceEE
Confidence 999999999998 99999999999999999998885 55443 3 446779999999999 68999
Q ss_pred EEEechh
Q 001758 395 YRLVTKS 401 (1017)
Q Consensus 395 ~rLys~~ 401 (1017)
+.+|...
T Consensus 585 ~Ll~~~~ 591 (677)
T COG1200 585 VLLYKPP 591 (677)
T ss_pred EEEeCCC
Confidence 9999853
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.87 E-value=3.4e-20 Score=229.77 Aligned_cols=321 Identities=16% Similarity=0.157 Sum_probs=179.2
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHH---Hhc-CCCcEEEeccHHHHHHHHHHHHHhhc----C-Cc
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL---LAE-NMEPILCTQPRRFAVVAVAKMVAKGR----N-CE 95 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~l---le~-~~~~IivtqPrrlaa~s~a~rva~e~----~-~~ 95 (1017)
....+++|..+.+.......+||.+|||+|||.....+. +.. +..+|+++.|++..+.++.+|+.+.. + ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 345789999886554556789999999999995543332 222 34589999999999999999987521 1 11
Q ss_pred cCCeeeEee---ccc--------------------cc---cCC---CCcEEEECHHHHHHHHH-hcCCCc----cCceEE
Q 001758 96 LGGEVGYHI---GHS--------------------KH---LSE---RSKIVFKTAGVLLDEMR-DRGLNA----LKYKVI 141 (1017)
Q Consensus 96 lg~~VGy~v---~~~--------------------~~---~~~---~t~Iiv~T~g~Ll~~l~-~~~l~l----~~~~~I 141 (1017)
++-..|... .+. .. ..+ -..|+|+|...++.... .+...+ ..-++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 111111110 000 00 001 26899999877764332 211111 145799
Q ss_pred EEecccccccccc-HHHHHHHHHHhcCCCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHH
Q 001758 142 ILDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQ 220 (1017)
Q Consensus 142 IIDEaHER~~~~d-~ll~~lk~ll~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~ 220 (1017)
||||+|--...+. ++..+++.+. ....++|+||||++.....++....+...++.. ...||.-...-..
T Consensus 444 IiDEVHAyD~ym~~lL~~~L~~l~--~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~--------~~~YPlvt~~~~~ 513 (878)
T PRK09694 444 IVDEVHAYDAYMYGLLEAVLKAQA--QAGGSVILLSATLPATLKQKLLDTYGGHDPVEL--------SSAYPLITWRGVN 513 (878)
T ss_pred EEechhhCCHHHHHHHHHHHHHHH--hcCCcEEEEeCCCCHHHHHHHHHHhcccccccc--------ccccccccccccc
Confidence 9999994332222 2333333332 235689999999987666666553321111000 0011110000000
Q ss_pred HHHHhccCCCCccccccccccCCCCCCcccc-cc--c--hhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHH
Q 001758 221 VTELLGVDHGMTSELSSLRYCSGPSPSMANA-EI--K--PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHL 295 (1017)
Q Consensus 221 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~--~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~ 295 (1017)
....+... ...+. .+....... .. . .....++..++..+. .++++|||+||++.++++++.
T Consensus 514 ~~~~~~~~--~~~~~-------~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-----~g~~vLVf~NTV~~Aq~ly~~ 579 (878)
T PRK09694 514 GAQRFDLS--AHPEQ-------LPARFTIQLEPICLADMLPDLTLLQRMIAAAN-----AGAQVCLICNLVDDAQKLYQR 579 (878)
T ss_pred cceeeecc--ccccc-------cCcceEEEEEeeccccccCHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHH
Confidence 00000000 00000 000000000 00 0 001112222222111 156899999999999999999
Q ss_pred hcCCC-CCcEEEEecCCCCHHHHH----HHHHhc-cCCc----EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCC
Q 001758 296 MKPLS-SFFKVHILHSSVDTEQAL----MAMKIC-KSHR----KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (1017)
Q Consensus 296 L~~~~-~~~~v~~lHs~l~~~er~----~i~~~f-~~gr----kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~ 365 (1017)
|+... .+..+..+||+++..+|. ++++.| ++++ +|||||+++|.|||| +++++|. ...
T Consensus 580 L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlIt--------dla--- 647 (878)
T PRK09694 580 LKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLIT--------QLC--- 647 (878)
T ss_pred HHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEE--------CCC---
Confidence 98543 346799999999998884 455667 4432 799999999999999 5788884 111
Q ss_pred ccccceeecCHhhHHHhcCCCCCCC
Q 001758 366 IDSAELVWVSQSQAEQRRGRTGRTC 390 (1017)
Q Consensus 366 ~~~l~~~~iSkasa~QR~GRAGR~~ 390 (1017)
...+++||+||+||..
T Consensus 648 ---------PidsLiQRaGR~~R~~ 663 (878)
T PRK09694 648 ---------PVDLLFQRLGRLHRHH 663 (878)
T ss_pred ---------CHHHHHHHHhccCCCC
Confidence 2346699999999983
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=6.7e-21 Score=226.43 Aligned_cols=296 Identities=19% Similarity=0.163 Sum_probs=178.3
Q ss_pred EEEcCCCCcHhHHHHHHH---HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeec------cccccCCCCcE
Q 001758 46 LIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG------HSKHLSERSKI 116 (1017)
Q Consensus 46 II~apTGSGKTtqip~~l---le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~------~~~~~~~~t~I 116 (1017)
++.|+||||||..+...+ ++.+ +.++++.|+..++.++++++.+.++..+....|..-. +.+....+.+|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-KSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 478999999996655444 3333 4688888999999999999988665433211110000 01112356799
Q ss_pred EEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHH----HHHHHHhcCCCceEEEEeeccChHHHHHHHhhcC
Q 001758 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLV----CVKQLLLKKNDLRVVLMSATADITKYRDYFRDLG 192 (1017)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~----~lk~ll~~~~~lklIlmSATld~~~~~~~f~~~~ 192 (1017)
+|+|...+.. .+.++++|||||+|+-+...+-... -+..+.....+.++|++|||+..+.+.....+
T Consensus 80 VVGTrsalf~-------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g-- 150 (505)
T TIGR00595 80 VIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQK-- 150 (505)
T ss_pred EECChHHHcC-------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcC--
Confidence 9999987642 3448999999999964433221110 01222334568899999999987766665432
Q ss_pred CCceeEEEEecCCCcceeee-eEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhh
Q 001758 193 RGERVEVLAIPSTNQRTIFQ-RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKN 271 (1017)
Q Consensus 193 ~~~~v~v~~~p~~~~~~~~~-v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~ 271 (1017)
.......+....+...+ +++.-+ ..+ . ....+.....+.+.+.+ .
T Consensus 151 ---~~~~~~l~~r~~~~~~p~v~vid~-------------~~~---------~----~~~~ls~~l~~~i~~~l----~- 196 (505)
T TIGR00595 151 ---AYRLLVLTRRVSGRKPPEVKLIDM-------------RKE---------P----RQSFLSPELITAIEQTL----A- 196 (505)
T ss_pred ---CeEEeechhhhcCCCCCeEEEEec-------------ccc---------c----ccCCccHHHHHHHHHHH----H-
Confidence 12222222211111111 111000 000 0 00112222222222221 1
Q ss_pred CCCCCCCEEEEeCCHHH------------------------------------------------------------HHH
Q 001758 272 ESDIEKSILVFLPTYYA------------------------------------------------------------LEQ 291 (1017)
Q Consensus 272 ~~~~~g~iLVFl~~~~~------------------------------------------------------------ie~ 291 (1017)
.++++|||+|++.- +++
T Consensus 197 ---~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~ 273 (505)
T TIGR00595 197 ---AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQ 273 (505)
T ss_pred ---cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHH
Confidence 14589999886542 466
Q ss_pred HHHHhcCCCCCcEEEEecCCCCHHHH--HHHHHhccCCc-EEEEEcCcccccccCCCeeEEE--eCCccceeeecCCCCc
Q 001758 292 QWHLMKPLSSFFKVHILHSSVDTEQA--LMAMKICKSHR-KVILATNIAESSVTIPKVAYVI--DSCRSLQVFWDVNRKI 366 (1017)
Q Consensus 292 l~~~L~~~~~~~~v~~lHs~l~~~er--~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VI--d~G~~k~~~yd~~~~~ 366 (1017)
+.+.|.+..++..|..+|++++..++ +.+++.|+.|. +|||+|++++.|+|+|+|+.|+ | +|.....
T Consensus 274 ~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~ 345 (505)
T TIGR00595 274 VEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHS 345 (505)
T ss_pred HHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccC
Confidence 66777666667889999999876654 78899999988 9999999999999999999885 4 4443333
Q ss_pred cccceeecCHhhHHHhcCCCCCC-CCCcEEE
Q 001758 367 DSAELVWVSQSQAEQRRGRTGRT-CDGQVYR 396 (1017)
Q Consensus 367 ~~l~~~~iSkasa~QR~GRAGR~-~~G~c~r 396 (1017)
..+....-.-+.+.|++|||||. .+|.++.
T Consensus 346 pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 346 PDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred cccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 32211111234569999999997 6788873
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.85 E-value=1.6e-19 Score=229.66 Aligned_cols=346 Identities=18% Similarity=0.235 Sum_probs=196.1
Q ss_pred CCchHHHHHHHHHHH-----cCCcEEEEcCCCCcHhHHHHHH---HHhc-CCCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 001758 26 LPVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQF---LLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~-----~~~~vII~apTGSGKTtqip~~---lle~-~~~~IivtqPrrlaa~s~a~rva~e~~~~l 96 (1017)
+.+++||.++++++. .++..+|+++||||||..+..+ ++.. ..++|+++.+|..++.|..+.+.... ..-
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~-~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTK-IEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcc-ccc
Confidence 568999999998875 2468999999999999443333 2322 34689999999999999888766531 111
Q ss_pred CCeee--Eee-ccc-cccCCCCcEEEECHHHHHHHHHhc-----CCCccCceEEEEeccccccccccH------------
Q 001758 97 GGEVG--YHI-GHS-KHLSERSKIVFKTAGVLLDEMRDR-----GLNALKYKVIILDEVHERSVESDL------------ 155 (1017)
Q Consensus 97 g~~VG--y~v-~~~-~~~~~~t~Iiv~T~g~Ll~~l~~~-----~l~l~~~~~IIIDEaHER~~~~d~------------ 155 (1017)
+..++ |.+ ... .....+.+|+|+|.+.|.+.+... ......+++||||||| |+...|-
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 10000 111 111 112346899999999998775421 1234589999999999 7642111
Q ss_pred --HHHHHHHHHhcCCCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCC-Ccceee----eeEeehHHHHHHHhccC
Q 001758 156 --VLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPST-NQRTIF----QRRVSYLEQVTELLGVD 228 (1017)
Q Consensus 156 --ll~~lk~ll~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~-~~~~~~----~v~v~yl~~~~~~l~~~ 228 (1017)
...-.+.++. ..+..+|+||||+... ..++|+. ++........ ..+... |..+. .. ....++.
T Consensus 570 ~~~~~~yr~iL~-yFdA~~IGLTATP~r~-t~~~FG~-----pv~~Ysl~eAI~DG~Lv~~~~p~~i~--t~-~~~~gi~ 639 (1123)
T PRK11448 570 LDYVSKYRRVLD-YFDAVKIGLTATPALH-TTEIFGE-----PVYTYSYREAVIDGYLIDHEPPIRIE--TR-LSQEGIH 639 (1123)
T ss_pred hhHHHHHHHHHh-hcCccEEEEecCCccc-hhHHhCC-----eeEEeeHHHHHhcCCcccCcCCEEEE--EE-ecccccc
Confidence 0223444554 3356889999998633 3456653 1111110000 000000 00000 00 0000000
Q ss_pred CCCccc--cccc---cccCCCCCC---cccc-----ccchhHHHHH-HHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHH
Q 001758 229 HGMTSE--LSSL---RYCSGPSPS---MANA-----EIKPEVHKLI-HDLVLHIHKNESDIEKSILVFLPTYYALEQQWH 294 (1017)
Q Consensus 229 ~~~~~~--~~~~---~~~~~~~~~---~~~~-----~~~~~~~~li-~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~ 294 (1017)
.....+ .... .......++ +... .+.+...+.+ .+++.++.. .+++++||||.+.++++.+.+
T Consensus 640 ~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~---~~~~KtiIF~~s~~HA~~i~~ 716 (1123)
T PRK11448 640 FEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP---TGEGKTLIFAATDAHADMVVR 716 (1123)
T ss_pred ccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc---cCCCcEEEEEcCHHHHHHHHH
Confidence 000000 0000 000000000 0000 0111112222 223333321 124799999999999998888
Q ss_pred HhcCC-------CCCcEEEEecCCCCHHHHHHHHHhccCCc--EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCC
Q 001758 295 LMKPL-------SSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (1017)
Q Consensus 295 ~L~~~-------~~~~~v~~lHs~l~~~er~~i~~~f~~gr--kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~ 365 (1017)
.|... .....+..+||+.+ ++..+++.|+++. +|+|+++++.+|+|+|.|.+||. +++..
T Consensus 717 ~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~rpvk- 785 (1123)
T PRK11448 717 LLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LRRVR- 785 (1123)
T ss_pred HHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE--------ecCCC-
Confidence 77532 11224566888875 4566889998876 79999999999999999999996 55554
Q ss_pred ccccceeecCHhhHHHhcCCCCCCCC--Cc-EEEEech-hhhccc
Q 001758 366 IDSAELVWVSQSQAEQRRGRTGRTCD--GQ-VYRLVTK-SFFGTL 406 (1017)
Q Consensus 366 ~~~l~~~~iSkasa~QR~GRAGR~~~--G~-c~rLys~-~~~~~l 406 (1017)
|+..|.||+||+.|..+ |+ .+.+++- ..++.+
T Consensus 786 ---------S~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l 821 (1123)
T PRK11448 786 ---------SRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYEAL 821 (1123)
T ss_pred ---------CHHHHHHHHhhhccCCccCCCceEEEEehHHHHHhc
Confidence 66777999999999977 55 5666664 334434
No 93
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.85 E-value=7.3e-20 Score=224.41 Aligned_cols=299 Identities=17% Similarity=0.192 Sum_probs=217.4
Q ss_pred chHHHHHHHHHHHcC----C--cEEEEcCCCCcHhHHHHHHHH--hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 001758 28 VMSLREKIVEKVLEN----R--VTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~----~--~vII~apTGSGKTtqip~~ll--e~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~ 99 (1017)
-++=|..+++.+.+. + +=+|||.-|-|||-....... -...+.|.++.|+.++|+|..+.+++.+. .++..
T Consensus 595 ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~-~fPV~ 673 (1139)
T COG1197 595 ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFA-GFPVR 673 (1139)
T ss_pred CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhc-CCCee
Confidence 356688888888643 2 569999999999965554433 33446899999999999999999887553 34445
Q ss_pred eeEeeccccc----------cCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCC
Q 001758 100 VGYHIGHSKH----------LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (1017)
Q Consensus 100 VGy~v~~~~~----------~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~ 169 (1017)
|+..-||... ..+..+|+|+|...| +..+.+.+++++||||=|.-++. --..+...+.+
T Consensus 674 I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRFGVk------~KEkLK~Lr~~ 742 (1139)
T COG1197 674 IEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRFGVK------HKEKLKELRAN 742 (1139)
T ss_pred EEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhcCcc------HHHHHHHHhcc
Confidence 5544455322 256789999998665 34556679999999999953333 23344455789
Q ss_pred ceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 001758 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1017)
Q Consensus 170 lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1017)
+-++-||||+-+..+.--+.++ ....++..|.. ..++++.+..+.
T Consensus 743 VDvLTLSATPIPRTL~Msm~Gi---RdlSvI~TPP~---~R~pV~T~V~~~----------------------------- 787 (1139)
T COG1197 743 VDVLTLSATPIPRTLNMSLSGI---RDLSVIATPPE---DRLPVKTFVSEY----------------------------- 787 (1139)
T ss_pred CcEEEeeCCCCcchHHHHHhcc---hhhhhccCCCC---CCcceEEEEecC-----------------------------
Confidence 9999999998666666555442 23445555543 345555442110
Q ss_pred ccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-
Q 001758 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1017)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1017)
...++.+.+.. +-..+|++-...|..++|+++++.|+.+-+..+|.+.||.|+..+-+.++..|-.|+
T Consensus 788 -------d~~~ireAI~R----El~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~ 856 (1139)
T COG1197 788 -------DDLLIREAILR----ELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEY 856 (1139)
T ss_pred -------ChHHHHHHHHH----HHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCC
Confidence 01122222221 112268999999999999999999999889999999999999999999999999999
Q ss_pred EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 329 kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
+|+|||.|.|+|||||+++.+|- .+ .+.+ .-|+..|-+||+||. ..|.||.||...
T Consensus 857 dVLv~TTIIEtGIDIPnANTiII--------e~----AD~f-----GLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 857 DVLVCTTIIETGIDIPNANTIII--------ER----ADKF-----GLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CEEEEeeeeecCcCCCCCceEEE--------ec----cccc-----cHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999999999999884 11 1222 336779999999999 679999999863
No 94
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=3.9e-20 Score=225.41 Aligned_cols=106 Identities=20% Similarity=0.171 Sum_probs=90.9
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCcEEEEEcCcccccccC---CCee-----
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTI---PKVA----- 347 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVIVATniaetGIdI---P~V~----- 347 (1017)
+.++||||++.+.++.++..|.. .++.+..+||.+...++..+..+++.| +|+||||+|++|+|| |+|.
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~--~gi~~~~L~~~~~~~e~~~i~~ag~~g-~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDE--AGIPHNLLNAKNAAKEAQIIAEAGQKG-AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH--CCCCEEEecCCccHHHHHHHHHcCCCC-eEEEEccchhcCcCCCcccccccccCc
Confidence 46999999999999999999985 358899999999888877776666544 899999999999999 7999
Q ss_pred EEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
+||+ ||.+.+. ..+.||+||+||. .+|.++.+++.++
T Consensus 505 ~VI~--------~d~p~s~----------r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 505 AVIG--------TERMESR----------RVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred EEEe--------ccCCCCH----------HHHHHhhccccCCCCCeeEEEEEcchH
Confidence 9999 8887744 4559999999999 5899999988643
No 95
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=9.1e-20 Score=217.88 Aligned_cols=105 Identities=24% Similarity=0.246 Sum_probs=86.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCC---Cee----
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIP---KVA---- 347 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP---~V~---- 347 (1017)
+.++|||+++.+.++.++..|.. .++.+..+||.+...++. +..++++. +|+||||+|++|+||+ +|.
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~--~gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GG 548 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLRE--AGLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGTDIKLEPGVAARGG 548 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH--CCCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhcccCcCCccchhhcCC
Confidence 35899999999999999999985 458899999986654444 44455555 8999999999999999 776
Q ss_pred -EEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 348 -YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 348 -~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
+||+ ||.+.+.. .+.||+||+||. .+|.++.+++.++
T Consensus 549 LhVI~--------~d~P~s~r----------~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 549 LHVIL--------TERHDSAR----------IDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CEEEE--------cCCCCCHH----------HHHHhcccccCCCCCeEEEEEechhH
Confidence 9998 88887444 459999999999 5899999998643
No 96
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.84 E-value=2.8e-19 Score=229.04 Aligned_cols=275 Identities=17% Similarity=0.198 Sum_probs=170.4
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC--C-e
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG--G-E 99 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~l--le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg--~-~ 99 (1017)
....+++|.+.++.+..+++++++||||||||+.+..++ +.....+++++.|++.+|.|+++.+..... ..| . .
T Consensus 76 g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~-~~~i~~~~ 154 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAE-KAGVGTVN 154 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHH-hcCCceee
Confidence 356899999999999999999999999999996332221 112234788899999999999888766432 111 1 1
Q ss_pred eeEeecc---c------cc-cCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEecccccccc-----------ccHHHH
Q 001758 100 VGYHIGH---S------KH-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLV 158 (1017)
Q Consensus 100 VGy~v~~---~------~~-~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~-----------~d~ll~ 158 (1017)
+++..+. . .. ...+.+|+|+||+.|.+.+.. +.. ++++|||||||. .++ .+|...
T Consensus 155 i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~-~L~~~k~vd~il~llGF~~e 230 (1171)
T TIGR01054 155 IGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDA-LLKASKNVDKLLKLLGFSEE 230 (1171)
T ss_pred eeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHh-hhhccccHHHHHHHcCCCHH
Confidence 2211111 0 01 134589999999999887654 112 799999999994 433 112111
Q ss_pred HHHHH----------------------H-hcCCCc--eEEEEeeccChHHHH-HHHhhcCCCceeEEEEecCCCcceeee
Q 001758 159 CVKQL----------------------L-LKKNDL--RVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQ 212 (1017)
Q Consensus 159 ~lk~l----------------------l-~~~~~l--klIlmSATld~~~~~-~~f~~~~~~~~v~v~~~p~~~~~~~~~ 212 (1017)
.+..+ + ....+. .++++|||..+.... .+|..+- .+++ .... ...-.
T Consensus 231 ~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll---~~~v---~~~~-~~~r~ 303 (1171)
T TIGR01054 231 LIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL---GFEV---GGGS-DTLRN 303 (1171)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc---ceEe---cCcc-ccccc
Confidence 11111 1 111222 367789995333222 3443210 0111 1000 00000
Q ss_pred eEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCH---HHH
Q 001758 213 RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTY---YAL 289 (1017)
Q Consensus 213 v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~---~~i 289 (1017)
+...|+ ... ...+.+.+++. .. ++.+|||+++. +.+
T Consensus 304 I~~~~~-------------------------------~~~---~~~~~L~~ll~----~l---~~~~IVFv~t~~~~~~a 342 (1171)
T TIGR01054 304 VVDVYV-------------------------------EDE---DLKETLLEIVK----KL---GTGGIVYVSIDYGKEKA 342 (1171)
T ss_pred eEEEEE-------------------------------ecc---cHHHHHHHHHH----Hc---CCCEEEEEeccccHHHH
Confidence 000000 000 00112222222 11 24789999998 999
Q ss_pred HHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEE----cCcccccccCCC-eeEEEeCCcccee
Q 001758 290 EQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQV 358 (1017)
Q Consensus 290 e~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVA----TniaetGIdIP~-V~~VId~G~~k~~ 358 (1017)
++++..|.. .++.+..+||+++. .+++.|+.|+ +|||| ||++++|||||+ |+|||+.|.++.+
T Consensus 343 ~~l~~~L~~--~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 343 EEIAEFLEN--HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHHHHHHHh--CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 999999984 35899999999973 5689999999 99999 599999999999 8999998887764
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.84 E-value=5.9e-20 Score=220.43 Aligned_cols=118 Identities=22% Similarity=0.216 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcc
Q 001758 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIA 337 (1017)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATnia 337 (1017)
..+.+.+...+.. +.++||||++.+.++.+...|... ++....+|+. ..+|+..+..|+++. .|+||||+|
T Consensus 392 ~ai~~~i~~~~~~----grpvLV~t~si~~se~ls~~L~~~--gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmA 463 (745)
T TIGR00963 392 KAVVDEIKERHAK----GQPVLVGTTSVEKSELLSNLLKER--GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMA 463 (745)
T ss_pred HHHHHHHHHHHhc----CCCEEEEeCcHHHHHHHHHHHHHc--CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccc
Confidence 3444444444433 469999999999999999999853 5778889998 777888888899888 999999999
Q ss_pred cccccCCC-------eeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhh
Q 001758 338 ESSVTIPK-------VAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1017)
Q Consensus 338 etGIdIP~-------V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~ 402 (1017)
++|+||+. .-+||. |+.+. |+..+.||+||+||. .||.+..+.+.++
T Consensus 464 gRGtDI~l~~V~~~GGl~VI~--------t~~p~----------s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 464 GRGTDIKLEEVKELGGLYVIG--------TERHE----------SRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred cCCcCCCccchhhcCCcEEEe--------cCCCC----------cHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 99999998 459998 66666 455569999999999 6899998888653
No 98
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.80 E-value=8.9e-21 Score=221.34 Aligned_cols=543 Identities=8% Similarity=-0.132 Sum_probs=366.6
Q ss_pred ccCcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC-------CcEEEeccHHHHHHHHHHHHHhhc
Q 001758 20 SPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-------EPILCTQPRRFAVVAVAKMVAKGR 92 (1017)
Q Consensus 20 ~~~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~-------~~IivtqPrrlaa~s~a~rva~e~ 92 (1017)
..++.-+|.+.+.+.|++++..+.++++.+.||||||++.++.++|.-. +.++.++||+..|...+.++.-+.
T Consensus 399 ~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fc 478 (1282)
T KOG0921|consen 399 KGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFC 478 (1282)
T ss_pred eecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeee
Confidence 3345568999999999999999999999999999999999999997632 379999999999999999988888
Q ss_pred CCccCCeeeEeeccc-cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCce
Q 001758 93 NCELGGEVGYHIGHS-KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1017)
Q Consensus 93 ~~~lg~~VGy~v~~~-~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lk 171 (1017)
++.++...+|..++. .....+..+-++|++.|+..+..+- ....+.+.||.|++++++|++..+++.+ .+
T Consensus 479 tvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m---~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~ 549 (1282)
T KOG0921|consen 479 TVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREM---ISTYRDLRVVLMSATIDTDLFTNFFSSI------PD 549 (1282)
T ss_pred ccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhh---hccchhhhhhhhhcccchhhhhhhhccc------cc
Confidence 877777777765544 3335566778899999988877653 2678899999999999999999888764 35
Q ss_pred EEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhc----c-CCCCcccccccccc---CC
Q 001758 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLG----V-DHGMTSELSSLRYC---SG 243 (1017)
Q Consensus 172 lIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~----~-~~~~~~~~~~~~~~---~~ 243 (1017)
+.++++|.+...|-.++-.. ....+|..+. +++..+.++..+... . .............+ ..
T Consensus 550 ~~~~grt~pvq~F~led~~~------~~~~vp~~~~----~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~ 619 (1282)
T KOG0921|consen 550 VTVHGRTFPVQSFFLEDIIQ------MTQFVPSEPS----QKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSR 619 (1282)
T ss_pred eeeccccccHHHHHHHHhhh------hhhccCCCcC----ccchhhcccccCchhhhcccccccccChhhcchhhhhhhc
Confidence 69999999988776665432 2222333211 111111111000000 0 00000000000000 00
Q ss_pred CCCCccccccchhHH--HHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCC----CCcEEEEecCCCCHHHH
Q 001758 244 PSPSMANAEIKPEVH--KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS----SFFKVHILHSSVDTEQA 317 (1017)
Q Consensus 244 ~~~~~~~~~~~~~~~--~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~----~~~~v~~lHs~l~~~er 317 (1017)
+........+.+... .++..+...|....+ ++.+|+|++++--.......+.... ....+...|+.+...+.
T Consensus 620 ~se~d~~f~l~Eal~~~i~s~~i~gailvflp--gwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p 697 (1282)
T KOG0921|consen 620 LSEKDIPFGLIEALLNDIASRNIDGAVLVFLP--GWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVP 697 (1282)
T ss_pred chhhcchhHHHHHHHhhhcccCCccceeeecC--chHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccc
Confidence 111111111111111 111122222333333 5789999999988877766665421 23456778888888777
Q ss_pred HHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEE
Q 001758 318 LMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYR 396 (1017)
Q Consensus 318 ~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~r 396 (1017)
+.+.+....+. +++..|+..++.|.+-.+.+|++++..+.+.+-.....+.+.++|-+.....||.|||+|...+.||.
T Consensus 698 ~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~ 777 (1282)
T KOG0921|consen 698 EGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFE 777 (1282)
T ss_pred ccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHH
Confidence 77777665555 99999999999999999999999999888777667777888889999999999999999999999999
Q ss_pred EechhhhccccccCCchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccc
Q 001758 397 LVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYE 476 (1017)
Q Consensus 397 Lys~~~~~~l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~ 476 (1017)
+.+...+.+|..+..+||.++.+....+.++....++++.+ ..+.+.+|+..... +..|...+-+.. .|+..
T Consensus 778 ~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~---p~dav~e~e~~l~~--m~~ld~n~elt~---lg~~l 849 (1282)
T KOG0921|consen 778 ALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPP---PYDAVIEAEAVLRE--MGALDANDELTP---LGRML 849 (1282)
T ss_pred HHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCC---chhhccCchHHHHH--hhhhhccCcccc---hhhhh
Confidence 99999999999999999999988777766664445666543 33666666554433 333433333333 37778
Q ss_pred cccchhhhcccCCChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHHHHHhhCcccCCCCccccccccchh
Q 001758 477 PTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEM 556 (1017)
Q Consensus 477 lT~lG~~la~lPldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~f~~~~~D~~~~~~~~~~ 556 (1017)
+|.+|+.....|+.|..+++....+.+-...-...++ ..+..+.++. -.+++. .-+..+|.+. +-+
T Consensus 850 a~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~-~~~~~~~~~r-l~g~q~--~~~g~kfsdh----------va~ 915 (1282)
T KOG0921|consen 850 ARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTP-FVPREKHHSR-LSGTQR--KFAGNKFSDH----------VAI 915 (1282)
T ss_pred hhccCcccccceeeechhhccchhhhhhhcccccccc-cccccccccc-cccchh--hccccccccc----------hhh
Confidence 9999999999999999888765443322111111222 2232332332 123332 2344556532 135
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 001758 557 VIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAV 626 (1017)
Q Consensus 557 ~~l~~l~af~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l 626 (1017)
++...+-.++.|..+... ......+|..+-++-.+++.-+++..||. .+
T Consensus 916 ~~v~q~~r~~~q~ga~~e--------------------~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~ 964 (1282)
T KOG0921|consen 916 VSVIQGYREAVQMGAAAE--------------------REFCERYSLSNPVLKMTDGARRQLIDVLR-QC 964 (1282)
T ss_pred hhhhhhhHHHhhhhhhhh--------------------hhHhHhhhhcchhhhhhhhhHHHHHHHHH-hc
Confidence 677777788999876431 35678899999999999999999999998 55
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.79 E-value=1.8e-18 Score=206.07 Aligned_cols=329 Identities=18% Similarity=0.227 Sum_probs=195.7
Q ss_pred CCchHHHHHHHHH--HHcCCcEEEEcCCCCcHhHHHHHHHHhcC---CCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 001758 26 LPVMSLREKIVEK--VLENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1017)
Q Consensus 26 LPi~~~Q~eil~a--i~~~~~vII~apTGSGKTtqip~~lle~~---~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~V 100 (1017)
+..+..|.+++.. ++++++.|..+||+.|||...-..++... .+.++...|-...++.-...+..+ .+.+|-.|
T Consensus 222 ~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~-~~~~G~~v 300 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPF-SIDLGFPV 300 (1008)
T ss_pred HHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhh-ccccCCcc
Confidence 4566778887653 67889999999999999965544443321 234555555544444444433332 22334222
Q ss_pred -eEeecccc-ccCCCCcEEEECHHHHHHHHH----hcCCCccCceEEEEecccc-----ccccccHHHHHHHHHHh--cC
Q 001758 101 -GYHIGHSK-HLSERSKIVFKTAGVLLDEMR----DRGLNALKYKVIILDEVHE-----RSVESDLVLVCVKQLLL--KK 167 (1017)
Q Consensus 101 -Gy~v~~~~-~~~~~t~Iiv~T~g~Ll~~l~----~~~l~l~~~~~IIIDEaHE-----R~~~~d~ll~~lk~ll~--~~ 167 (1017)
+|.=++.. ...+...+.+||.++-...+. .+. +..++.|||||.|- |+... ..++..++- ..
T Consensus 301 e~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~--~~~~g~vvVdElhmi~d~~rg~~l---E~~l~k~~y~~~~ 375 (1008)
T KOG0950|consen 301 EEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGR--LDFLGMVVVDELHMIGDKGRGAIL---ELLLAKILYENLE 375 (1008)
T ss_pred hhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCC--ccccCcEEEeeeeeeeccccchHH---HHHHHHHHHhccc
Confidence 23212221 224567899999988665432 333 33789999999993 33322 223333322 23
Q ss_pred CCceEEEEeecc-ChHHHHHHHhhc---CCCceeEEEEecCCCcceeeee-EeehHHHHHHHhccCCCCccccccccccC
Q 001758 168 NDLRVVLMSATA-DITKYRDYFRDL---GRGERVEVLAIPSTNQRTIFQR-RVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (1017)
Q Consensus 168 ~~lklIlmSATl-d~~~~~~~f~~~---~~~~~v~v~~~p~~~~~~~~~v-~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (1017)
..+++|+||||+ |.+.+++|++.. .+-.|++...-.. .....+.. +..-+.++... |
T Consensus 376 ~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik-~G~~i~~~~r~~~lr~ia~l---------------~-- 437 (1008)
T KOG0950|consen 376 TSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIK-PGSLIYESSRNKVLREIANL---------------Y-- 437 (1008)
T ss_pred cceeEeeeecccCChHHHHHHhhhhheecccCcccchhccC-CCcccccchhhHHHHHhhhh---------------h--
Confidence 347899999997 888999999752 1112222221110 01111111 00000000000 0
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC------------------------
Q 001758 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP------------------------ 298 (1017)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~------------------------ 298 (1017)
..+..+.+. ..+..++.+.+ + .+.++|||||++..++.++..+..
T Consensus 438 --~~~~g~~dp-D~~v~L~tet~-------~-e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~l 506 (1008)
T KOG0950|consen 438 --SSNLGDEDP-DHLVGLCTETA-------P-EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLL 506 (1008)
T ss_pred --hhhcccCCC-cceeeehhhhh-------h-cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHh
Confidence 000000000 01111121221 1 135699999999988876654421
Q ss_pred --C----------CCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCC
Q 001758 299 --L----------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK 365 (1017)
Q Consensus 299 --~----------~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~ 365 (1017)
. .-.+.+.++|+|++.++|+.+...|+.|- .|++||+++..|++.|..+++|-. |.
T Consensus 507 r~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira---------P~-- 575 (1008)
T KOG0950|consen 507 RRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA---------PY-- 575 (1008)
T ss_pred hcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC---------Cc--
Confidence 0 01246889999999999999999999998 999999999999999999999952 22
Q ss_pred ccccceeecCHhhHHHhcCCCCCC---CCCcEEEEechhhh
Q 001758 366 IDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFF 403 (1017)
Q Consensus 366 ~~~l~~~~iSkasa~QR~GRAGR~---~~G~c~rLys~~~~ 403 (1017)
+.....++.+|.||+|||||+ .-|.++.++.+.+.
T Consensus 576 ---~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 576 ---VGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred ---cccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 223345888999999999999 46999999987653
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.77 E-value=4.7e-17 Score=203.19 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=91.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC--c-EEEEEcCcccccccCCCeeEEEeC
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH--R-KVILATNIAESSVTIPKVAYVIDS 352 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g--r-kVIVATniaetGIdIP~V~~VId~ 352 (1017)
..++||||.++..+..+.+.|+. ..++.+..+||+|+..+|.++++.|+.+ . +|+|||+++++|+|++.+++||+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~-~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn- 570 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRE-REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL- 570 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhh-ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE-
Confidence 46999999999999999999953 2358899999999999999999999763 4 99999999999999999999999
Q ss_pred CccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC-CC--cEEEEechh
Q 001758 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DG--QVYRLVTKS 401 (1017)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G--~c~rLys~~ 401 (1017)
||.|.+...| .||+||+||.+ .| .+|.++.+.
T Consensus 571 -------fDlP~nP~~~----------eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 571 -------FDLPFNPDLL----------EQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred -------ecCCCCHHHH----------HHHhcccccCCCCceEEEEEccCCC
Confidence 9999876666 99999999984 33 355555553
No 101
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.75 E-value=3.3e-17 Score=203.54 Aligned_cols=316 Identities=22% Similarity=0.235 Sum_probs=178.7
Q ss_pred CCCCchHHHHHHHHHHHc---CC-cEEEEcCCCCcHhHHHHHHH---Hhc---CCCcEEEeccHHHHHHHHHHHHHhhcC
Q 001758 24 SSLPVMSLREKIVEKVLE---NR-VTLIVGETGCGKSSQVPQFL---LAE---NMEPILCTQPRRFAVVAVAKMVAKGRN 93 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~ai~~---~~-~vII~apTGSGKTtqip~~l---le~---~~~~IivtqPrrlaa~s~a~rva~e~~ 93 (1017)
..=+.++.|..+++.+.. .+ .+++.||||+|||++...+. ++. ...+++.+.|.+.+..++++++....+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 192 IEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred cCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 345667888888888764 35 89999999999996554443 333 245899999999999999999886443
Q ss_pred C--ccCC-eeeEee----ccccc---c----CC-----C-CcEEEECHHHHHHHHHhcC---CCccCceEEEEecccccc
Q 001758 94 C--ELGG-EVGYHI----GHSKH---L----SE-----R-SKIVFKTAGVLLDEMRDRG---LNALKYKVIILDEVHERS 150 (1017)
Q Consensus 94 ~--~lg~-~VGy~v----~~~~~---~----~~-----~-t~Iiv~T~g~Ll~~l~~~~---l~l~~~~~IIIDEaHER~ 150 (1017)
. ..+. ..|... ...+. . .. - +-++++|...+........ +.....+++|+||+|-..
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 2 1222 111110 00100 0 00 1 1233333333331111111 111267899999999433
Q ss_pred ccccHHHHHHHHHH-hcCCCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCC
Q 001758 151 VESDLVLVCVKQLL-LKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDH 229 (1017)
Q Consensus 151 ~~~d~ll~~lk~ll-~~~~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~ 229 (1017)
.++ .+..+++.+. ...-+.++|+||||++......+....+....+.. ..+..+...-+.+......
T Consensus 352 ~~~-~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~---------- 419 (733)
T COG1203 352 DET-MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVE-NAKFCPKEDEPGLKRKERV---------- 419 (733)
T ss_pred ccc-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceec-cccccccccccccccccch----------
Confidence 332 2333222222 12457899999999985544443333222111110 0000000000000000000
Q ss_pred CCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEec
Q 001758 230 GMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILH 309 (1017)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lH 309 (1017)
+..+. .. ......+. ...+.++++||-+||+..+.++++.|+.... .+..+|
T Consensus 420 -----------------~~~~~-----~~---~~~~~~~~-~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlH 471 (733)
T COG1203 420 -----------------DVEDG-----PQ---EELIELIS-EEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLH 471 (733)
T ss_pred -----------------hhhhh-----hh---Hhhhhcch-hhhccCCcEEEEEecHHHHHHHHHHHHhcCC--CEEEEe
Confidence 00000 00 00111111 1122368999999999999999999986554 799999
Q ss_pred CCCCHHHHHHHHHhc----cCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcC
Q 001758 310 SSVDTEQALMAMKIC----KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (1017)
Q Consensus 310 s~l~~~er~~i~~~f----~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~G 384 (1017)
|.+...+|.+.++.. +... .|+|||.+.|.||||. .+++|- + ...++ +..||+|
T Consensus 472 SRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT---------e-~aPid----------SLIQR~G 530 (733)
T COG1203 472 SRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT---------E-LAPID----------SLIQRAG 530 (733)
T ss_pred cccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee---------c-CCCHH----------HHHHHHH
Confidence 999999988877643 3334 9999999999999995 777772 1 23344 4499999
Q ss_pred CCCCCC---CCcEEEEech
Q 001758 385 RTGRTC---DGQVYRLVTK 400 (1017)
Q Consensus 385 RAGR~~---~G~c~rLys~ 400 (1017)
|++|.+ +|..|..-..
T Consensus 531 Rv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 531 RVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred HHhhcccccCCceeEeecc
Confidence 999996 5666655444
No 102
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.73 E-value=8.4e-17 Score=173.09 Aligned_cols=278 Identities=17% Similarity=0.131 Sum_probs=163.9
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHh--HHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEee-
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI- 104 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKT--tqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v- 104 (1017)
.+|.|.+.+.+.+.+.+++++.|||-||| +|+|.++.+ + -.+++.|.-.+.....-.+. .+|......-...-
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad-g--~alvi~plislmedqil~lk-qlgi~as~lnanssk 170 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD-G--FALVICPLISLMEDQILQLK-QLGIDASMLNANSSK 170 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC-C--ceEeechhHHHHHHHHHHHH-HhCcchhhccCcccH
Confidence 45778888899999999999999999999 777776654 2 23455564333322222222 22221111000000
Q ss_pred ----ccc---cccCCCCcEEEECHHHHHHH--HH---hcCCCccCceEEEEecccccc-ccccHHH--HHHHHHHhcCCC
Q 001758 105 ----GHS---KHLSERSKIVFKTAGVLLDE--MR---DRGLNALKYKVIILDEVHERS-VESDLVL--VCVKQLLLKKND 169 (1017)
Q Consensus 105 ----~~~---~~~~~~t~Iiv~T~g~Ll~~--l~---~~~l~l~~~~~IIIDEaHER~-~~~d~ll--~~lk~ll~~~~~ 169 (1017)
+.+ ......-+++|.||+.+... +. ...+....+.+|-|||+|.-+ +..||.. ..|..+.+..+.
T Consensus 171 e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~ 250 (695)
T KOG0353|consen 171 EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKG 250 (695)
T ss_pred HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCC
Confidence 000 01123568999999988643 22 223344478999999999622 2223322 123334456788
Q ss_pred ceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCcc
Q 001758 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1017)
Q Consensus 170 lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1017)
..+|+++||.....+.+.-+-++-.... .+.......+..|.| ...|.
T Consensus 251 ~~iigltatatn~vl~d~k~il~ie~~~-tf~a~fnr~nl~yev-----------------------------~qkp~-- 298 (695)
T KOG0353|consen 251 APIIGLTATATNHVLDDAKDILCIEAAF-TFRAGFNRPNLKYEV-----------------------------RQKPG-- 298 (695)
T ss_pred CceeeeehhhhcchhhHHHHHHhHHhhh-eeecccCCCCceeEe-----------------------------eeCCC--
Confidence 9999999996433333322211100000 000000000011111 00111
Q ss_pred ccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-
Q 001758 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1017)
Q Consensus 250 ~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1017)
...+.+.+++..|...-. +..-+|+|-++.+++.++..|+. .++....+|+.|.++++.-+-+.+..++
T Consensus 299 ------n~dd~~edi~k~i~~~f~--gqsgiiyc~sq~d~ekva~alkn--~gi~a~~yha~lep~dks~~hq~w~a~ei 368 (695)
T KOG0353|consen 299 ------NEDDCIEDIAKLIKGDFA--GQSGIIYCFSQKDCEKVAKALKN--HGIHAGAYHANLEPEDKSGAHQGWIAGEI 368 (695)
T ss_pred ------ChHHHHHHHHHHhccccC--CCcceEEEeccccHHHHHHHHHh--cCccccccccccCccccccccccccccce
Confidence 011223333333332222 45679999999999999999984 4577888999999998877777777777
Q ss_pred EEEEEcCcccccccCCCeeEEEe
Q 001758 329 KVILATNIAESSVTIPKVAYVID 351 (1017)
Q Consensus 329 kVIVATniaetGIdIP~V~~VId 351 (1017)
.|||||-...+|||-|+|++||+
T Consensus 369 qvivatvafgmgidkpdvrfvih 391 (695)
T KOG0353|consen 369 QVIVATVAFGMGIDKPDVRFVIH 391 (695)
T ss_pred EEEEEEeeecccCCCCCeeEEEe
Confidence 99999999999999999999998
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=7.7e-16 Score=187.57 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=86.6
Q ss_pred CcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHH--hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 001758 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1017)
Q Consensus 22 ~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~ll--e~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~ 99 (1017)
.++.|-+++|-.+++-.+.-++--|..++||+|||..+...++ ......+.++.|.+.+|.+.++.+..... .+|-.
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~-~lGLt 153 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYE-FLGLT 153 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhc-ccCce
Confidence 3456777777777888877677779999999999955444433 22223577777888888888877665432 45666
Q ss_pred eeEeecccc----ccCCCCcEEEECHHHH-HHHHHhc-CCCc-----cCceEEEEecccc
Q 001758 100 VGYHIGHSK----HLSERSKIVFKTAGVL-LDEMRDR-GLNA-----LKYKVIILDEVHE 148 (1017)
Q Consensus 100 VGy~v~~~~----~~~~~t~Iiv~T~g~L-l~~l~~~-~l~l-----~~~~~IIIDEaHE 148 (1017)
||.-++... ...-.++|+|+||+.| ...+.++ .+.+ ..+.++||||||.
T Consensus 154 v~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred EEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 665544321 1123589999999999 7777765 2222 3789999999994
No 104
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.68 E-value=1.2e-15 Score=180.82 Aligned_cols=364 Identities=15% Similarity=0.187 Sum_probs=199.2
Q ss_pred CCCCchHHHHHHHHHHH----c-CCcEEEEcCCCCcHhHHHHHH---HH-hcCCCcEEEeccHHHHHHHHHHHHHhhcCC
Q 001758 24 SSLPVMSLREKIVEKVL----E-NRVTLIVGETGCGKSSQVPQF---LL-AENMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~ai~----~-~~~vII~apTGSGKTtqip~~---ll-e~~~~~IivtqPrrlaa~s~a~rva~e~~~ 94 (1017)
..+-.+.||..++..+. + ++.++|++.||+|||....++ |+ ....++|+++.-|..+..|........+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~-- 239 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFL-- 239 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhC--
Confidence 45667889998887764 2 356999999999999333222 23 3334689999999999888776655543
Q ss_pred ccCCeeeEeeccccccCCCCcEEEECHHHHHHHHHhc-----CCCccCceEEEEeccccccccccHHHHHHHHHHhcCCC
Q 001758 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDR-----GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (1017)
Q Consensus 95 ~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~-----~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~ 169 (1017)
+-|..+... ........++|.++|.+.+...+... .+....+++||||||| |++..+.- +++.-+ +
T Consensus 240 P~~~~~n~i--~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYF-----d 310 (875)
T COG4096 240 PFGTKMNKI--EDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYF-----D 310 (875)
T ss_pred CCccceeee--ecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHH-----H
Confidence 222222211 12222346799999999998876643 3334479999999999 88665432 222111 1
Q ss_pred ceEEEEeeccChH---HHHHHHhhcCCCceeEEEEecCC-Ccc-----eeeeeEeehHHHHHHHhccCCCCccccccccc
Q 001758 170 LRVVLMSATADIT---KYRDYFRDLGRGERVEVLAIPST-NQR-----TIFQRRVSYLEQVTELLGVDHGMTSELSSLRY 240 (1017)
Q Consensus 170 lklIlmSATld~~---~~~~~f~~~~~~~~v~v~~~p~~-~~~-----~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~ 240 (1017)
.-.++++||+... .--.||++ .|+........ ..+ ....+....- .+-+..+.+...+.....-
T Consensus 311 A~~~gLTATP~~~~d~~T~~~F~g----~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~---~~G~~~~~~serek~~g~~ 383 (875)
T COG4096 311 AATQGLTATPKETIDRSTYGFFNG----EPTYAYSLEEAVEDGFLVPYKVIRIDTDFD---LDGWKPDAGSEREKLQGEA 383 (875)
T ss_pred HHHHhhccCcccccccccccccCC----CcceeecHHHHhhccccCCCCceEEeeecc---ccCcCcCccchhhhhhccc
Confidence 1234559997432 12235531 11111110000 000 0000110000 0000000000000000000
Q ss_pred cCCCCCCccc-----cccchhHHHHHHHHHHHHHhh--CCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCc---EEEEecC
Q 001758 241 CSGPSPSMAN-----AEIKPEVHKLIHDLVLHIHKN--ESDIEKSILVFLPTYYALEQQWHLMKPLSSFF---KVHILHS 310 (1017)
Q Consensus 241 ~~~~~~~~~~-----~~~~~~~~~li~~lv~~i~~~--~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~---~v~~lHs 310 (1017)
......++.. ....+...+.+...+.+.... ..+..+++||||.+..+++.++..|....+.. -+..+.+
T Consensus 384 i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 384 IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 0000011111 111222345555666666555 22225799999999999999999997654332 2444455
Q ss_pred CCCHHHHHHHHHhccC-Cc--EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCC
Q 001758 311 SVDTEQALMAMKICKS-HR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG 387 (1017)
Q Consensus 311 ~l~~~er~~i~~~f~~-gr--kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAG 387 (1017)
.-...+ ..++.|.. .+ +|.++.+++.||||+|.|..+|- +-.- -|+.-|.||+||+-
T Consensus 464 d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF---------~r~V---------rSktkF~QMvGRGT 523 (875)
T COG4096 464 DAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF---------DRKV---------RSKTKFKQMVGRGT 523 (875)
T ss_pred cchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee---------hhhh---------hhHHHHHHHhcCcc
Confidence 433333 23445533 34 99999999999999999999883 2221 18888999999999
Q ss_pred CCCC--C-----c-EEEEech---hhhccccccCCchhhhccHHHHHHH
Q 001758 388 RTCD--G-----Q-VYRLVTK---SFFGTLEDHECPAILRLSLRLQVLL 425 (1017)
Q Consensus 388 R~~~--G-----~-c~rLys~---~~~~~l~~~~~PEI~r~~L~~~vL~ 425 (1017)
|..+ | + -|.+++= -.|-.+.+...++-.+.+|+.-++.
T Consensus 524 Rl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~ 572 (875)
T COG4096 524 RLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFA 572 (875)
T ss_pred ccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhh
Confidence 9843 3 2 4555542 2233455555666666666654443
No 105
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=9.6e-17 Score=165.32 Aligned_cols=277 Identities=19% Similarity=0.258 Sum_probs=173.5
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHH---HHHhhcC-CccCC
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAK---MVAKGRN-CELGG 98 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~-----~~~IivtqPrrlaa~s~a~---rva~e~~-~~lg~ 98 (1017)
..+.|.++++...-+-+|+..|..|-|||..+...-+... .-.++|...+|.+|-++.+ |+++.+. ..+..
T Consensus 65 psevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaV 144 (387)
T KOG0329|consen 65 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSV 144 (387)
T ss_pred chHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 3567888888877789999999999999965554444332 2256777777777776654 4444332 11111
Q ss_pred ee-eEeeccc-cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 99 EV-GYHIGHS-KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 99 ~V-Gy~v~~~-~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.. |..|..+ ..+..-++|+|+|||.++.+.+.+.+++.++.+.|+|||+...-..|....+-........+-|+..+|
T Consensus 145 FfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfs 224 (387)
T KOG0329|consen 145 FFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 224 (387)
T ss_pred EEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeee
Confidence 11 1222222 233457899999999999999999998899999999999965555566655555555566788999999
Q ss_pred eccChH--HHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccc
Q 001758 177 ATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1017)
Q Consensus 177 ATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1017)
||++.+ ...+-|- ..|+++. +++..++. -..+...|... .+..-
T Consensus 225 atlskeiRpvC~kFm----QdPmEi~-----------------vDdE~KLt-------LHGLqQ~YvkL-----ke~eK- 270 (387)
T KOG0329|consen 225 ATLSKEIRPVCHKFM----QDPMEIF-----------------VDDEAKLT-------LHGLQQYYVKL-----KENEK- 270 (387)
T ss_pred eecchhhHHHHHhhh----cCchhhh-----------------ccchhhhh-------hhhHHHHHHhh-----hhhhh-
Confidence 998644 2222221 1222221 11111100 00000000000 00011
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCcEEEEEc
Q 001758 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILAT 334 (1017)
Q Consensus 255 ~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVIVAT 334 (1017)
...+.+++..+. ..+++||+.+...+ + | .++ +|||
T Consensus 271 ---Nrkl~dLLd~Le------FNQVvIFvKsv~Rl-----------------------~----------f--~kr-~vat 305 (387)
T KOG0329|consen 271 ---NRKLNDLLDVLE------FNQVVIFVKSVQRL-----------------------S----------F--QKR-LVAT 305 (387)
T ss_pred ---hhhhhhhhhhhh------hcceeEeeehhhhh-----------------------h----------h--hhh-hHHh
Confidence 111112222211 35788888876530 0 2 124 9999
Q ss_pred CcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 335 niaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
++..+|+||..|+.|++ ||.+...++| ++|.|||||. ..|..+.+.+.+
T Consensus 306 ~lfgrgmdiervNi~~N--------Ydmp~~~DtY----------lHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 306 DLFGRGMDIERVNIVFN--------YDMPEDSDTY----------LHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred hhhccccCcccceeeec--------cCCCCCchHH----------HHHhhhhhccccccceeehhcch
Confidence 99999999999999999 9999987777 9999999999 469999887754
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.67 E-value=6.9e-16 Score=157.45 Aligned_cols=154 Identities=22% Similarity=0.280 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc---C-CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEee
Q 001758 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---N-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (1017)
Q Consensus 29 ~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~---~-~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v 104 (1017)
+++|.++++.+.++++++|.||||+|||+.+..+++.. + ...++++.|.+.++.++.+++...... .+..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-ccccccccc
Confidence 57999999999999999999999999997777665432 2 238899999999999999888776654 222222221
Q ss_pred ccc-------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHH---HHHHHHHhcCCCceEEE
Q 001758 105 GHS-------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL---VCVKQLLLKKNDLRVVL 174 (1017)
Q Consensus 105 ~~~-------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll---~~lk~ll~~~~~lklIl 174 (1017)
+.. .....+.+|+|+||++|++.+......+.++++|||||+|+.... ++.. .+++. +....+.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~-~~~~~~~~~i~ 157 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRR-LKRFKNIQIIL 157 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHH-SHTTTTSEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHH-hcCCCCCcEEE
Confidence 211 112357999999999999999875455668999999999964432 2222 22222 22234789999
Q ss_pred EeeccChHHHHH
Q 001758 175 MSATADITKYRD 186 (1017)
Q Consensus 175 mSATld~~~~~~ 186 (1017)
||||+. ..+.+
T Consensus 158 ~SAT~~-~~~~~ 168 (169)
T PF00270_consen 158 LSATLP-SNVEK 168 (169)
T ss_dssp EESSST-HHHHH
T ss_pred EeeCCC-hhHhh
Confidence 999998 55443
No 107
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.1e-15 Score=185.51 Aligned_cols=105 Identities=25% Similarity=0.268 Sum_probs=88.4
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCcEEEEEcCcccccccC---CCee-----
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTI---PKVA----- 347 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVIVATniaetGIdI---P~V~----- 347 (1017)
+.+|||||++.+.++.++..|.+. ++....+|+.+...++..+.++++.| .|+||||+|++|+|| ++|.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~--gi~~~~Lna~~~~~Ea~ii~~ag~~g-~VtIATnmAGRGtDI~l~~~V~~~GGL 516 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEA--GIPHAVLNAKNHAKEAEIIMNAGQRG-AVTIATNMAGRGTDIKLGPGVKELGGL 516 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC--CCCeeEecCCcHHHHHHHHHhcCCCc-eEEEEeccccCCCCCCCCcchhhhCCc
Confidence 469999999999999999999854 47788999998877777766666555 599999999999999 4899
Q ss_pred EEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechh
Q 001758 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1017)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~ 401 (1017)
+||. |+.+. |+..+.||.|||||. .||.+..+++-+
T Consensus 517 hVI~--------te~pe----------s~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 517 AVIG--------TERHE----------SRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred EEEe--------eecCC----------cHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 9998 66665 445559999999999 689998888865
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=4e-15 Score=181.33 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATni 336 (1017)
.+.+.+.+...+.. +.++||||++.+.++.+++.|.. .++....+||. ..+|+..+..|+++. .|+||||+
T Consensus 416 ~~aI~~~I~~~~~~----grpVLIft~Si~~se~Ls~~L~~--~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNm 487 (830)
T PRK12904 416 FDAVVEDIKERHKK----GQPVLVGTVSIEKSELLSKLLKK--AGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNM 487 (830)
T ss_pred HHHHHHHHHHHHhc----CCCEEEEeCcHHHHHHHHHHHHH--CCCceEeccCc--hHHHHHHHHHhcCCCceEEEeccc
Confidence 44455555444432 46999999999999999999985 45788899995 678888889999988 99999999
Q ss_pred ccccccCC
Q 001758 337 AESSVTIP 344 (1017)
Q Consensus 337 aetGIdIP 344 (1017)
|++|+||+
T Consensus 488 AGRGtDI~ 495 (830)
T PRK12904 488 AGRGTDIK 495 (830)
T ss_pred ccCCcCcc
Confidence 99999996
No 109
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.62 E-value=3.4e-14 Score=168.61 Aligned_cols=165 Identities=17% Similarity=0.178 Sum_probs=112.4
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHH----HHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCC-ccCCe
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ----VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNC-ELGGE 99 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtq----ip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~-~lg~~ 99 (1017)
.+-....|.+.++.+..+..++|+|||.+|||+. +-..+.+...+.++.+.|...++.|++..|-..++. .+-..
T Consensus 509 dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 509 DFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred ccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 3667788999999999999999999999999953 333444555568899999999988887776554421 11111
Q ss_pred ---eeEeeccccccCCCCcEEEECHHHHHHHHHhcCC---CccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEE
Q 001758 100 ---VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1017)
Q Consensus 100 ---VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l---~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklI 173 (1017)
.|-..+.-....-+++|+|+-|+.+-..|...+. ...++++||+||+|.-+-..| +++...+..--...++
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed---~l~~Eqll~li~CP~L 665 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEED---GLLWEQLLLLIPCPFL 665 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccccc---chHHHHHHHhcCCCee
Confidence 1111111111123789999999999988876422 233899999999995332222 2222222223456899
Q ss_pred EEeecc-ChHHHHHHHhhcC
Q 001758 174 LMSATA-DITKYRDYFRDLG 192 (1017)
Q Consensus 174 lmSATl-d~~~~~~~f~~~~ 192 (1017)
++|||+ +++.+..|.+..+
T Consensus 666 ~LSATigN~~l~qkWlnq~~ 685 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLNQRG 685 (1330)
T ss_pred EEecccCCHHHHHHHHHHHH
Confidence 999998 8999999998543
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.62 E-value=3.2e-14 Score=175.22 Aligned_cols=335 Identities=14% Similarity=0.134 Sum_probs=173.1
Q ss_pred hHHHHHHHHHHH----c------CCcEEEEcCCCCcHhHHHHHH---HHh-cCCCcEEEeccHHHHHHHHHHHHHhhcCC
Q 001758 29 MSLREKIVEKVL----E------NRVTLIVGETGCGKSSQVPQF---LLA-ENMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1017)
Q Consensus 29 ~~~Q~eil~ai~----~------~~~vII~apTGSGKTtqip~~---lle-~~~~~IivtqPrrlaa~s~a~rva~e~~~ 94 (1017)
..+|..++..+. + .+..+|+.+||||||..+... ++. ....+|+++.||..+..|..+.+......
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~ 319 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKD 319 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCC
Confidence 556777776652 2 368999999999999444333 332 23458999999999999998887664321
Q ss_pred ccCCeeeEeeccccc-cCCCCcEEEECHHHHHHHHHh--cCCCcc-CceEEEEeccccccccccHHHHHHHHHHhcCCCc
Q 001758 95 ELGGEVGYHIGHSKH-LSERSKIVFKTAGVLLDEMRD--RGLNAL-KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1017)
Q Consensus 95 ~lg~~VGy~v~~~~~-~~~~t~Iiv~T~g~Ll~~l~~--~~l~l~-~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~l 170 (1017)
.+ ..++..-..... ......|+|+|.+.|.+.+.. ..+... .-.+||+|||| |+...++. +.+....|+.
T Consensus 320 ~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~~~p~a 393 (667)
T TIGR00348 320 CA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKKALKNA 393 (667)
T ss_pred CC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHhhCCCC
Confidence 11 011110001111 123578999999999864432 111111 12389999999 77554422 2222345778
Q ss_pred eEEEEeeccCh----HHHHHHHhhcCCCceeEEEEecCC-CcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCC
Q 001758 171 RVVLMSATADI----TKYRDYFRDLGRGERVEVLAIPST-NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (1017)
Q Consensus 171 klIlmSATld~----~~~~~~f~~~~~~~~v~v~~~p~~-~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (1017)
..+++|||+-. ..+ ..|+.. .+..+....+... ..+...+ +.|.....+ ...+...-.......+...+.
T Consensus 394 ~~lGfTaTP~~~~d~~t~-~~f~~~-fg~~i~~Y~~~~AI~dG~~~~--i~Y~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 468 (667)
T TIGR00348 394 SFFGFTGTPIFKKDRDTS-LTFAYV-FGRYLHRYFITDAIRDGLTVK--IDYEDRLPE-DHLDRKKLDAFFDEIFELLPE 468 (667)
T ss_pred cEEEEeCCCccccccccc-ccccCC-CCCeEEEeeHHHHhhcCCeee--EEEEecchh-hccChHHHHHHHHHHHHhhhc
Confidence 99999999732 222 222210 0011111111000 0111111 111100000 000000000000000000000
Q ss_pred --CCcccccc------------ch-hHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCC---cEEEE
Q 001758 246 --PSMANAEI------------KP-EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF---FKVHI 307 (1017)
Q Consensus 246 --~~~~~~~~------------~~-~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~---~~v~~ 307 (1017)
.......+ .+ .....+..++.++........++.+|||.++.++..+.+.|....+. ...+.
T Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv 548 (667)
T TIGR00348 469 RIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIV 548 (667)
T ss_pred cccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEE
Confidence 00000000 00 11222333444443332222479999999999999998887543221 23444
Q ss_pred ecCCCCHH---------------------HHHHHHHhccC-Cc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCC
Q 001758 308 LHSSVDTE---------------------QALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (1017)
Q Consensus 308 lHs~l~~~---------------------er~~i~~~f~~-gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~ 364 (1017)
+++....+ ....+++.|+. +. +|+|.++++.||+|.|.+.+++ .|-+.
T Consensus 549 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy---------ldKpl 619 (667)
T TIGR00348 549 MTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY---------LDKPL 619 (667)
T ss_pred ecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE---------Eeccc
Confidence 55443221 12356677865 34 9999999999999999999988 45444
Q ss_pred CccccceeecCHhhHHHhcCCCCCC-CCCc
Q 001758 365 KIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (1017)
Q Consensus 365 ~~~~l~~~~iSkasa~QR~GRAGR~-~~G~ 393 (1017)
... .++|..||+-|. .+|+
T Consensus 620 k~h----------~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 620 KYH----------GLLQAIARTNRIDGKDK 639 (667)
T ss_pred ccc----------HHHHHHHHhccccCCCC
Confidence 332 349999999995 5665
No 111
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.61 E-value=6.7e-15 Score=161.07 Aligned_cols=298 Identities=16% Similarity=0.206 Sum_probs=169.7
Q ss_pred EEEeccHHHHHHHHHHHHHhhcCC----ccC--Ceee-Eeec-cccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEE
Q 001758 71 ILCTQPRRFAVVAVAKMVAKGRNC----ELG--GEVG-YHIG-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVII 142 (1017)
Q Consensus 71 IivtqPrrlaa~s~a~rva~e~~~----~lg--~~VG-y~v~-~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~II 142 (1017)
-+++.|.|.+|.+....+.+..-- .+- -.+| ...+ +-......++|+|+|||+|+..+..+.+.+.+...++
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlv 368 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLV 368 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEE
Confidence 455556666677777655442210 010 0111 1111 2233467899999999999999988777777999999
Q ss_pred Eecccccc--ccccHHHHHHHHHHhc---CCCceEEEEeeccC---hHHHHHHHhhcCCCceeEEEEecCCCc-ceeeee
Q 001758 143 LDEVHERS--VESDLVLVCVKQLLLK---KNDLRVVLMSATAD---ITKYRDYFRDLGRGERVEVLAIPSTNQ-RTIFQR 213 (1017)
Q Consensus 143 IDEaHER~--~~~d~ll~~lk~ll~~---~~~lklIlmSATld---~~~~~~~f~~~~~~~~v~v~~~p~~~~-~~~~~v 213 (1017)
+||++--. .++|++..+-+.+... ...++.++.|||+. ..++.+-.-.. +.-|.+......+. -+.++.
T Consensus 369 lDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhf--ptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 369 LDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHF--PTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred ecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccC--ceeEecccccccchhhcccee
Confidence 99999311 3345555554444333 24589999999963 22222211000 00011000000000 000000
Q ss_pred Eee-hH----HHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHH--HHHHHHHHhhCCCCCCCEEEEeCCH
Q 001758 214 RVS-YL----EQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLI--HDLVLHIHKNESDIEKSILVFLPTY 286 (1017)
Q Consensus 214 ~v~-yl----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li--~~lv~~i~~~~~~~~g~iLVFl~~~ 286 (1017)
-+. .+ .+....++.+..-.... .... ........ ....++ ..-+..|.+.. -.+.+|||.|+
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn----~~pg---~~Spe~~s-~a~kilkgEy~v~ai~~h~---mdkaiifcrtk 515 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDN----LLPG---QVSPENPS-SATKILKGEYGVVAIRRHA---MDKAIIFCRTK 515 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccc----cccc---cCCCCChh-hhhHHhcCchhhhhhhhhc---cCceEEEEecc
Confidence 000 00 00001111110000000 0000 00000000 000110 01122233222 35899999999
Q ss_pred HHHHHHHHHhcCCC-CCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCC
Q 001758 287 YALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (1017)
Q Consensus 287 ~~ie~l~~~L~~~~-~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~ 364 (1017)
.++..+.+++...+ ..+..+.+||+..+.+|++.++.|+... |.+|||++|++|+||-++-|+|+.- .|.
T Consensus 516 ~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invt--------lpd 587 (725)
T KOG0349|consen 516 QDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVT--------LPD 587 (725)
T ss_pred ccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEe--------cCc
Confidence 99999999987643 4688999999999999999999998887 9999999999999999999999822 222
Q ss_pred CccccceeecCHhhHHHhcCCCCCC-CCCcEEEEec
Q 001758 365 KIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (1017)
Q Consensus 365 ~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys 399 (1017)
.|.+|.+|+||.||. +-|..+.|..
T Consensus 588 ----------~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 588 ----------DKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ----------ccchhhhhhhccchhhhcceeEEEee
Confidence 456779999999999 6799888864
No 112
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.55 E-value=5.3e-14 Score=148.47 Aligned_cols=151 Identities=23% Similarity=0.253 Sum_probs=105.7
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHH----hc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~ll----e~---~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~V 100 (1017)
++++|.+++..+.+++++++++|||+|||..+...++ .. ...+++++.|++.++.+.++.+...... .+..+
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~-~~~~~ 100 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKH-TNLKV 100 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhcc-CCceE
Confidence 6899999999999999999999999999966444433 22 2346888889999998888776654321 12222
Q ss_pred eEeeccc------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEE
Q 001758 101 GYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1017)
Q Consensus 101 Gy~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIl 174 (1017)
+...+.. .....+.+|+|+|++.|++.+......+.++++|||||+|+-. +..+...+...+.....+.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~~~~~~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMGFEDQIREILKLLPKDRQTLL 179 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccChHHHHHHHHHhCCcccEEEE
Confidence 2111111 1123478899999999999888766666699999999999522 33343333333333445789999
Q ss_pred EeeccC
Q 001758 175 MSATAD 180 (1017)
Q Consensus 175 mSATld 180 (1017)
+|||++
T Consensus 180 ~SAT~~ 185 (203)
T cd00268 180 FSATMP 185 (203)
T ss_pred EeccCC
Confidence 999987
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=8.5e-14 Score=169.42 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCcEEEEEcCcc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIA 337 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVIVATnia 337 (1017)
...+.+-+..++.. +.+||||+.+.+..+.++..|.. .++....||+.....++..+.++|+.|. |+||||+|
T Consensus 435 ~~Aii~ei~~~~~~----GrpVLV~t~sv~~se~ls~~L~~--~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-VtIATnmA 507 (908)
T PRK13107 435 YQAIIKDIKDCRER----GQPVLVGTVSIEQSELLARLMVK--EKIPHEVLNAKFHEREAEIVAQAGRTGA-VTIATNMA 507 (908)
T ss_pred HHHHHHHHHHHHHc----CCCEEEEeCcHHHHHHHHHHHHH--CCCCeEeccCcccHHHHHHHHhCCCCCc-EEEecCCc
Confidence 44455555666644 46999999999999999999985 4578889999999999999999998876 99999999
Q ss_pred cccccCC
Q 001758 338 ESSVTIP 344 (1017)
Q Consensus 338 etGIdIP 344 (1017)
++|+||-
T Consensus 508 GRGTDIk 514 (908)
T PRK13107 508 GRGTDIV 514 (908)
T ss_pred CCCccee
Confidence 9999985
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=8.3e-14 Score=168.59 Aligned_cols=318 Identities=19% Similarity=0.194 Sum_probs=185.8
Q ss_pred CCCchHHHHHHHHHHHcC----CcEEEEcCCCCcHhHHHHHHH---HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 25 SLPVMSLREKIVEKVLEN----RVTLIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~----~~vII~apTGSGKTtqip~~l---le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
.+.+..-|..+++.|... +..++.|-||||||-.+.+.+ +..| +.++++.|--.+.-++.+|+...+|.+++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 578899999999999766 799999999999996555554 4445 46777778777778888888888776654
Q ss_pred CeeeEe---ec---cccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHH----HHHHHHhcC
Q 001758 98 GEVGYH---IG---HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLV----CVKQLLLKK 167 (1017)
Q Consensus 98 ~~VGy~---v~---~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~----~lk~ll~~~ 167 (1017)
...+.- -+ +....++..+|+++|---+. ..+.++++|||||=|+-+.-.+-... -+-.+....
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 322211 11 22233678999999965553 23459999999999974433221100 011222334
Q ss_pred CCceEEEEeeccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCC
Q 001758 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1017)
Q Consensus 168 ~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1017)
.+..+|+-|||+..+.+.+.-.+ ....+....+.. ...+.++..++. ..+...
T Consensus 348 ~~~pvvLgSATPSLES~~~~~~g-----~y~~~~L~~R~~-~a~~p~v~iiDm-----------r~e~~~---------- 400 (730)
T COG1198 348 ENAPVVLGSATPSLESYANAESG-----KYKLLRLTNRAG-RARLPRVEIIDM-----------RKEPLE---------- 400 (730)
T ss_pred hCCCEEEecCCCCHHHHHhhhcC-----ceEEEEcccccc-ccCCCcceEEec-----------cccccc----------
Confidence 57899999999987777665332 111111211111 000001111100 000000
Q ss_pred ccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHH----------------------------------------
Q 001758 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY---------------------------------------- 287 (1017)
Q Consensus 248 ~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~---------------------------------------- 287 (1017)
......+...+.|.+.+ .. +.++|+|+|.+.
T Consensus 401 -~~~~lS~~Ll~~i~~~l-------~~-geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~ 471 (730)
T COG1198 401 -TGRSLSPALLEAIRKTL-------ER-GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQ 471 (730)
T ss_pred -cCccCCHHHHHHHHHHH-------hc-CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCC
Confidence 00001222222222211 11 235555555432
Q ss_pred --------------------HHHHHHHHhcCCCCCcEEEEecCCCCHH--HHHHHHHhccCCc-EEEEEcCcccccccCC
Q 001758 288 --------------------ALEQQWHLMKPLSSFFKVHILHSSVDTE--QALMAMKICKSHR-KVILATNIAESSVTIP 344 (1017)
Q Consensus 288 --------------------~ie~l~~~L~~~~~~~~v~~lHs~l~~~--er~~i~~~f~~gr-kVIVATniaetGIdIP 344 (1017)
-++++.+.|....++.+++.+-++.+.. .-+..+..|..|. .|||.|.++..|.|+|
T Consensus 472 ~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp 551 (730)
T COG1198 472 EPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFP 551 (730)
T ss_pred CCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcc
Confidence 1233344444444667788887776543 2456678898888 9999999999999999
Q ss_pred CeeEEE----eCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEE
Q 001758 345 KVAYVI----DSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYR 396 (1017)
Q Consensus 345 ~V~~VI----d~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~r 396 (1017)
+|+.|. |+|+... |.+..-.. -.-+.|-+|||||. .+|.++.
T Consensus 552 ~vtLVgvl~aD~~L~~~---DfRA~Er~-------fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 552 NVTLVGVLDADTGLGSP---DFRASERT-------FQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred cceEEEEEechhhhcCC---CcchHHHH-------HHHHHHHHhhhccCCCCCeEEE
Confidence 999885 4454332 22222111 23458999999999 7887654
No 115
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=5.5e-13 Score=162.61 Aligned_cols=123 Identities=18% Similarity=0.198 Sum_probs=84.6
Q ss_pred CCC--chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 001758 25 SLP--VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1017)
Q Consensus 25 ~LP--i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~--~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~V 100 (1017)
.-| ++++|.+++..+..++.+|..++||+|||..+...++... ...+.++.|++.+|.+.++.+.... ..+|-.|
T Consensus 88 ~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~-k~lGLsV 166 (970)
T PRK12899 88 HQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVL-RWLGLTT 166 (970)
T ss_pred cCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHH-hhcCCeE
Confidence 356 8999999999999999999999999999966655554332 1234444555667777776665432 2344445
Q ss_pred eEeecccc----ccCCCCcEEEECHHHH-HHHHHhcCCCcc-------CceEEEEecccc
Q 001758 101 GYHIGHSK----HLSERSKIVFKTAGVL-LDEMRDRGLNAL-------KYKVIILDEVHE 148 (1017)
Q Consensus 101 Gy~v~~~~----~~~~~t~Iiv~T~g~L-l~~l~~~~l~l~-------~~~~IIIDEaHE 148 (1017)
|..++..+ ...-.++|+|+|||.| +..+.++.+.+. .+.++|||||+.
T Consensus 167 ~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 167 GVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 54433211 1112589999999999 888887644433 457999999995
No 116
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.51 E-value=1.2e-12 Score=164.47 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=91.4
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccC---Cc-EEEEEcCcccccccCCCeeEEEe
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS---HR-KVILATNIAESSVTIPKVAYVID 351 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~---gr-kVIVATniaetGIdIP~V~~VId 351 (1017)
+.+||||+.-...+..+.+.|.. .++....+||+++.++|..+++.|.. .+ -+|++|.+++.|||+...++||.
T Consensus 487 g~KVLIFSQft~~LdiLed~L~~--~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLMY--RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHHH--cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 46999999988888888888863 45788899999999999999999953 23 57899999999999999999998
Q ss_pred CCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC---CCcEEEEechhhhc
Q 001758 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSFFG 404 (1017)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~c~rLys~~~~~ 404 (1017)
||++.+.... .|+.|||.|.+ +=.+|+|+++...+
T Consensus 565 --------yD~dWNP~~d----------~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 565 --------YDSDWNPQVD----------LQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred --------eCCCCChHHH----------HHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 9998876655 99999999984 34689999986554
No 117
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=1.8e-13 Score=155.00 Aligned_cols=279 Identities=16% Similarity=0.151 Sum_probs=168.0
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEEECH
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTA 121 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv~T~ 121 (1017)
.+.+.-+|||.||||+-..+-+.+... =++.-|-|++|..+++|+-. .|.+..-..|-..++...-...+..+-||.
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~aks--GvycGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~a~hvScTV 267 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSAKS--GVYCGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNPAQHVSCTV 267 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhhcc--ceecchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCcccceEEEE
Confidence 367888999999999988888776543 36667999999999999854 344433333322222222234577888998
Q ss_pred HHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC-CCceEEEEeeccChHHHHHHHhhcCCCceeEEE
Q 001758 122 GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFRDLGRGERVEVL 200 (1017)
Q Consensus 122 g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~-~~lklIlmSATld~~~~~~~f~~~~~~~~v~v~ 200 (1017)
+|.-- -..|++.||||++ ..-+.+-.-++-+.++-.. .++.+-+=-|-+ +...+....- ++.+++.
T Consensus 268 EM~sv--------~~~yeVAViDEIQ-mm~Dp~RGwAWTrALLGl~AdEiHLCGepsvl--dlV~~i~k~T--Gd~vev~ 334 (700)
T KOG0953|consen 268 EMVSV--------NTPYEVAVIDEIQ-MMRDPSRGWAWTRALLGLAADEIHLCGEPSVL--DLVRKILKMT--GDDVEVR 334 (700)
T ss_pred EEeec--------CCceEEEEehhHH-hhcCcccchHHHHHHHhhhhhhhhccCCchHH--HHHHHHHhhc--CCeeEEE
Confidence 88621 1279999999999 3333333333333333211 111111111111 1111111111 1122221
Q ss_pred EecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEE
Q 001758 201 AIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSIL 280 (1017)
Q Consensus 201 ~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iL 280 (1017)
.-.. ..+- .. .+ .++..+..-. .|+++
T Consensus 335 ~YeR---------------------------------------l~pL----~v----~~---~~~~sl~nlk---~GDCv 361 (700)
T KOG0953|consen 335 EYER---------------------------------------LSPL----VV----EE---TALGSLSNLK---PGDCV 361 (700)
T ss_pred eecc---------------------------------------cCcc----ee----hh---hhhhhhccCC---CCCeE
Confidence 1100 0000 00 00 1111111111 45665
Q ss_pred EEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccC--Cc-EEEEEcCcccccccCCCeeEEEeCCccce
Q 001758 281 VFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS--HR-KVILATNIAESSVTIPKVAYVIDSCRSLQ 357 (1017)
Q Consensus 281 VFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~--gr-kVIVATniaetGIdIP~V~~VId~G~~k~ 357 (1017)
| +-++++|-.+...+.+.+ +-.+..+||+||++-|.+.-..|.+ +. +|+|||+..++|+|+ +|+-||-
T Consensus 362 V-~FSkk~I~~~k~kIE~~g-~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF------ 432 (700)
T KOG0953|consen 362 V-AFSKKDIFTVKKKIEKAG-NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIF------ 432 (700)
T ss_pred E-EeehhhHHHHHHHHHHhc-CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEE------
Confidence 5 446788888888887543 3458899999999988887778865 45 999999999999999 7888884
Q ss_pred eeecCCCCccccceeecCHhhHHHhcCCCCCCC----CCcEEEEechh
Q 001758 358 VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC----DGQVYRLVTKS 401 (1017)
Q Consensus 358 ~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~----~G~c~rLys~~ 401 (1017)
....+...-.+++|+.+++.|-+|||||.+ .|.+-.|+.++
T Consensus 433 ---~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 433 ---YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ---eecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 223333445677899999999999999983 58888888765
No 118
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.45 E-value=7.8e-12 Score=150.65 Aligned_cols=273 Identities=19% Similarity=0.233 Sum_probs=174.8
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHH---HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCC--ccCCee
Q 001758 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNC--ELGGEV 100 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~---lle~~~~~IivtqPrrlaa~s~a~rva~e~~~--~lg~~V 100 (1017)
.+.|+.|..-...+..|+..-|.||||.||||....+ +...+ ++++++.|++.++.|+++++...... .+...+
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~ 159 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLV 159 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 4789999999999999999999999999999654443 33333 67888889999999999998764311 122222
Q ss_pred eEeecc---------ccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEecccc---ccccccHHHHHH--------
Q 001758 101 GYHIGH---------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE---RSVESDLVLVCV-------- 160 (1017)
Q Consensus 101 Gy~v~~---------~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHE---R~~~~d~ll~~l-------- 160 (1017)
.|+-.. +...+++.+|+|+|.+.|.+.+.. +.-.++++|+||+++- .+-|.|-++.++
T Consensus 160 ~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~ 237 (1187)
T COG1110 160 VYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIE 237 (1187)
T ss_pred eeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHH
Confidence 233211 112256789999999999876653 1123899999999994 334444443322
Q ss_pred --------HHH----------------------HhcCCCceEEEEeeccChHH-HHHHHhhc-CCCceeEEEEecCCCcc
Q 001758 161 --------KQL----------------------LLKKNDLRVVLMSATADITK-YRDYFRDL-GRGERVEVLAIPSTNQR 208 (1017)
Q Consensus 161 --------k~l----------------------l~~~~~lklIlmSATld~~~-~~~~f~~~-~~~~~v~v~~~p~~~~~ 208 (1017)
+.- ..+...-.+|++|||..+.. -...|..+ |. ++ +.
T Consensus 238 ~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----ev----G~--- 306 (1187)
T COG1110 238 SAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----EV----GS--- 306 (1187)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----cc----Cc---
Confidence 000 01224568999999974332 22223221 10 00 00
Q ss_pred eeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCC---
Q 001758 209 TIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPT--- 285 (1017)
Q Consensus 209 ~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~--- 285 (1017)
-..++.++.+ ........+.+.+++..+ +...|||+|.
T Consensus 307 -----~~~~LRNIvD---------------------------~y~~~~~~e~~~elvk~l-------G~GgLIfV~~d~G 347 (1187)
T COG1110 307 -----GGEGLRNIVD---------------------------IYVESESLEKVVELVKKL-------GDGGLIFVPIDYG 347 (1187)
T ss_pred -----cchhhhheee---------------------------eeccCccHHHHHHHHHHh-------CCCeEEEEEcHHh
Confidence 0011111111 111111122222333322 3357999999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEc----CcccccccCC-CeeEEEeCCcccee
Q 001758 286 YYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT----NIAESSVTIP-KVAYVIDSCRSLQV 358 (1017)
Q Consensus 286 ~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVAT----niaetGIdIP-~V~~VId~G~~k~~ 358 (1017)
++.++++++.|+. .++.+...|+. .+..++.|..|. .|+|.+ +++-+|||+| -|+|+|-.|.+|.+
T Consensus 348 ~e~aeel~e~Lr~--~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 348 REKAEELAEYLRS--HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred HHHHHHHHHHHHh--cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 8899999999984 45888888874 245678899998 998874 6899999999 78999998887654
No 119
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.42 E-value=2.3e-12 Score=125.47 Aligned_cols=134 Identities=33% Similarity=0.379 Sum_probs=95.3
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhcC----CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeecccccc------CC
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHL------SE 112 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~~----~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~------~~ 112 (1017)
++++|.|+||+|||+++..++.+.. .++++++.|++.++.+....+...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 4689999999999988887776553 368999999999999998888776542 34444443333222 46
Q ss_pred CCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeecc
Q 001758 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1017)
Q Consensus 113 ~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATl 179 (1017)
...|+++|++.+.+.+.........+++|||||+|. .....................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999988776543344899999999993 322222222122334456678999999995
No 120
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.41 E-value=1.1e-12 Score=146.30 Aligned_cols=307 Identities=17% Similarity=0.190 Sum_probs=178.1
Q ss_pred CCCchHHHHHHHHHHHcC---CcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeee
Q 001758 25 SLPVMSLREKIVEKVLEN---RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~---~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
.--+++||++.+..+..| +.-||+.|-|+|||..-.-.+ -...+.++|+....+.+.|..+.........-....-
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~r 378 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICR 378 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eeecccEEEEecCccCHHHHHHHHHhhcccCccceEE
Confidence 345789999999999866 678999999999993211111 1122456777777677777766665543332222222
Q ss_pred EeeccccccCCCCcEEEECHHHHHHH---------HHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceE
Q 001758 102 YHIGHSKHLSERSKIVFKTAGVLLDE---------MRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (1017)
Q Consensus 102 y~v~~~~~~~~~t~Iiv~T~g~Ll~~---------l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lkl 172 (1017)
+.-...+....++.|+|+|..|+-.- +. +.+.-..++++|+||+|- +-..+.++++..-..---
T Consensus 379 FTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m-~~l~~~EWGllllDEVHv------vPA~MFRRVlsiv~aHcK 451 (776)
T KOG1123|consen 379 FTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIM-DFLRGREWGLLLLDEVHV------VPAKMFRRVLSIVQAHCK 451 (776)
T ss_pred eeccccccCCCCCcEEEEeeehhhhcccccHHHHHHH-HHHhcCeeeeEEeehhcc------chHHHHHHHHHHHHHHhh
Confidence 22112222355788999999887421 11 111223789999999992 223344554443222234
Q ss_pred EEEeecc--ChHHHHH-------------HHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCcccccc
Q 001758 173 VLMSATA--DITKYRD-------------YFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSS 237 (1017)
Q Consensus 173 IlmSATl--d~~~~~~-------------~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~ 237 (1017)
++++||+ ..+++.+ |.+-...++...|--. .+...|+.+...
T Consensus 452 LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCa-----------------------EVWCpMt~eFy~ 508 (776)
T KOG1123|consen 452 LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCA-----------------------EVWCPMTPEFYR 508 (776)
T ss_pred ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeee-----------------------eeecCCCHHHHH
Confidence 7899997 2222222 1111111111111000 011112221111
Q ss_pred ccccCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHH
Q 001758 238 LRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQA 317 (1017)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er 317 (1017)
..........+.-..+++..+....- +...|... +.+||||..+.-...+.+-.|.+ -+++|..++.+|
T Consensus 509 eYL~~~t~kr~lLyvMNP~KFraCqf-LI~~HE~R---gDKiIVFsDnvfALk~YAikl~K-------pfIYG~Tsq~ER 577 (776)
T KOG1123|consen 509 EYLRENTRKRMLLYVMNPNKFRACQF-LIKFHERR---GDKIIVFSDNVFALKEYAIKLGK-------PFIYGPTSQNER 577 (776)
T ss_pred HHHhhhhhhhheeeecCcchhHHHHH-HHHHHHhc---CCeEEEEeccHHHHHHHHHHcCC-------ceEECCCchhHH
Confidence 00000011111222334444444433 33445443 46999999999888887777752 257899999999
Q ss_pred HHHHHhccCCc--EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC
Q 001758 318 LMAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC 390 (1017)
Q Consensus 318 ~~i~~~f~~gr--kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~ 390 (1017)
.+|++.|+-.. +-|+-.-++.+|||+|..+++|. ..... =|+-+-.||.||.-|..
T Consensus 578 m~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQ--------ISSH~---------GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 578 MKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSHG---------GSRRQEAQRLGRILRAK 635 (776)
T ss_pred HHHHHhcccCCccceEEEeeccCccccCCcccEEEE--------Ecccc---------cchHHHHHHHHHHHHHh
Confidence 99999997554 77888899999999999999997 22222 25666789999988874
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.41 E-value=1.9e-11 Score=155.30 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCC--CCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~--~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVAT 334 (1017)
.+.+.+.+..+.... +|++|||+++.+..+.++..|... ..++.+. ..+.. ..|..+++.|+.+. .|+++|
T Consensus 659 ~~~ia~~i~~l~~~~---~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt 732 (850)
T TIGR01407 659 AQEIASYIIEITAIT---SPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGT 732 (850)
T ss_pred HHHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEc
Confidence 344445555554433 479999999999999999998742 1233333 23332 45777889998776 999999
Q ss_pred CcccccccCCCee--EEEeCCccceeeecCCCC--------------ccccce--eecCHhhHHHhcCCCCCCC--CCcE
Q 001758 335 NIAESSVTIPKVA--YVIDSCRSLQVFWDVNRK--------------IDSAEL--VWVSQSQAEQRRGRTGRTC--DGQV 394 (1017)
Q Consensus 335 niaetGIdIP~V~--~VId~G~~k~~~yd~~~~--------------~~~l~~--~~iSkasa~QR~GRAGR~~--~G~c 394 (1017)
+.+.+|||+|+.. .||-.|++ |.++.. -..+.. .|-..-.+.|-+||.=|.. .|.+
T Consensus 733 ~sf~EGVD~~g~~l~~viI~~LP----f~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v 808 (850)
T TIGR01407 733 SSFWEGVDFPGNGLVCLVIPRLP----FANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSI 808 (850)
T ss_pred ceeecccccCCCceEEEEEeCCC----CCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEE
Confidence 9999999999655 56666765 222221 011100 0222345789999999984 4665
Q ss_pred EEE
Q 001758 395 YRL 397 (1017)
Q Consensus 395 ~rL 397 (1017)
+.|
T Consensus 809 ~il 811 (850)
T TIGR01407 809 VIL 811 (850)
T ss_pred EEE
Confidence 544
No 122
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.41 E-value=2.9e-13 Score=126.92 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhcccCCCCCccccccchhhhcccCCChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHH
Q 001758 455 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDAL 532 (1017)
Q Consensus 455 ~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~ 532 (1017)
.|++.|+.+||||++ | +||++|+.|++||++|++|+||+.+..+||+.++++|||+|++ .++|..|.++++.
T Consensus 1 ~A~~~L~~Lgald~~---~--~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~~~ 72 (102)
T PF04408_consen 1 KALELLKSLGALDEN---G--NLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKEEN 72 (102)
T ss_dssp -HHHHHHHTTSB-TT---S---B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGHHH
T ss_pred CHHHHHHHCCCCCCC---C--CcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHHHH
Confidence 488999999999874 5 6999999999999999999999999999999999999999999 4589888765543
No 123
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=3.3e-12 Score=132.25 Aligned_cols=155 Identities=25% Similarity=0.234 Sum_probs=107.0
Q ss_pred CCCchHHHHHHHHHHHcC-CcEEEEcCCCCcHhHHHHHHHHhcCC----CcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 001758 25 SLPVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAENM----EPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~-~~vII~apTGSGKTtqip~~lle~~~----~~IivtqPrrlaa~s~a~rva~e~~~~lg~~ 99 (1017)
..+++++|.+++..+... ++++|.|+||+|||+.+..++++... .+++++.|++.++.+..+++........+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 356799999999999988 99999999999999877777765533 4689999988888888888776553211111
Q ss_pred eeEeeccc------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEE
Q 001758 100 VGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1017)
Q Consensus 100 VGy~v~~~------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklI 173 (1017)
.....+.. .......+|+++|++.+.+.+.........+++|||||+|..... .....+...+....+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEE
Confidence 11111111 112233499999999999988875544558999999999964421 22222222222224678999
Q ss_pred EEeeccC
Q 001758 174 LMSATAD 180 (1017)
Q Consensus 174 lmSATld 180 (1017)
+||||+.
T Consensus 165 ~~saT~~ 171 (201)
T smart00487 165 LLSATPP 171 (201)
T ss_pred EEecCCc
Confidence 9999984
No 124
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.32 E-value=3.8e-10 Score=139.08 Aligned_cols=251 Identities=18% Similarity=0.126 Sum_probs=131.1
Q ss_pred CcEEEECHHHHHHHHH--hcCC---C--ccCceEEEEeccccccccccHHHHHHHHHHh--cCCCceEEEEeeccChHHH
Q 001758 114 SKIVFKTAGVLLDEMR--DRGL---N--ALKYKVIILDEVHERSVESDLVLVCVKQLLL--KKNDLRVVLMSATADITKY 184 (1017)
Q Consensus 114 t~Iiv~T~g~Ll~~l~--~~~l---~--l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~--~~~~lklIlmSATld~~~~ 184 (1017)
..|+|||+..++.... ..+. . -..-++|||||+|- .....+.+|..++. ..-..+||+||||+++...
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHa---YD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDD---YEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCcc---CCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 5799999988887652 1111 1 12578999999993 22344455555554 3456799999999987765
Q ss_pred HHHHhhc-----------CC---CceeEEEEecCCCcc--ee-----ee-eEeehHHHHHHHhccCCCCccccccccccC
Q 001758 185 RDYFRDL-----------GR---GERVEVLAIPSTNQR--TI-----FQ-RRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (1017)
Q Consensus 185 ~~~f~~~-----------~~---~~~v~v~~~p~~~~~--~~-----~~-v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (1017)
..++... |. ...+....+...... .. |. ..-.|+......+... ..........
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~----p~~R~a~i~~ 715 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKK----PVRRLAELLS 715 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcC----cccceEEEee
Confidence 5554332 21 111222222221100 00 00 0001222222222200 0000000001
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHhhC----CCCCCC---EEEEeCCHHHHHHHHHHhcC----CCCCcEEEEecCC
Q 001758 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNE----SDIEKS---ILVFLPTYYALEQQWHLMKP----LSSFFKVHILHSS 311 (1017)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~lv~~i~~~~----~~~~g~---iLVFl~~~~~ie~l~~~L~~----~~~~~~v~~lHs~ 311 (1017)
.+...-..........+.+.+.+..+|... +..+++ -||=+.+.+.+-.++..|.. ....+.+..+||.
T Consensus 716 ~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr 795 (1110)
T TIGR02562 716 LSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQ 795 (1110)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEeccc
Confidence 111111111222344555666666666532 211222 26667777776666666543 2334567889999
Q ss_pred CCHHHHHHHHHhc----------------------cC----Cc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCC
Q 001758 312 VDTEQALMAMKIC----------------------KS----HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (1017)
Q Consensus 312 l~~~er~~i~~~f----------------------~~----gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~ 364 (1017)
.+...|..+++.. +. +. .|||||.+.|.|+|++ .+++|- + +.
T Consensus 796 ~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~---------~-~~ 864 (1110)
T TIGR02562 796 DPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA---------D-PS 864 (1110)
T ss_pred ChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee---------c-cC
Confidence 8776665554321 11 23 9999999999999994 555552 1 33
Q ss_pred CccccceeecCHhhHHHhcCCCCCCCCC
Q 001758 365 KIDSAELVWVSQSQAEQRRGRTGRTCDG 392 (1017)
Q Consensus 365 ~~~~l~~~~iSkasa~QR~GRAGR~~~G 392 (1017)
.++++ +||+||+.|.+.+
T Consensus 865 ~~~sl----------iQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 865 SMRSI----------IQLAGRVNRHRLE 882 (1110)
T ss_pred cHHHH----------HHHhhcccccccC
Confidence 44444 9999999998543
No 125
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.30 E-value=1e-11 Score=128.08 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=94.9
Q ss_pred CCchHHHHHHHHHHHc-------CCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC-
Q 001758 26 LPVMSLREKIVEKVLE-------NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG- 97 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~-------~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg- 97 (1017)
+.++++|.+++..+.+ ++.+++.+|||||||..+..++.+... +++++.|+..++.|....+.........
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~ 80 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-KVLIVAPNISLLEQWYDEFDDFGSEKYNF 80 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-EEEEEESSHHHHHHHHHHHHHHSTTSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-ceeEecCHHHHHHHHHHHHHHhhhhhhhh
Confidence 5688999999999984 689999999999999777766655544 7888889988888888777332211100
Q ss_pred -----------Cee----eEeeccccccCCCCcEEEECHHHHHHHHHhcC-----------CCccCceEEEEeccccccc
Q 001758 98 -----------GEV----GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRG-----------LNALKYKVIILDEVHERSV 151 (1017)
Q Consensus 98 -----------~~V----Gy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~-----------l~l~~~~~IIIDEaHER~~ 151 (1017)
... ..............++.+.|.+.|........ .....+++||+||||+ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~-~~ 159 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH-YP 159 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC-TH
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh-cC
Confidence 000 00000111224567899999999987765311 1123789999999994 33
Q ss_pred cccHHHHHHHHHHhcCCCceEEEEeeccC
Q 001758 152 ESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (1017)
Q Consensus 152 ~~d~ll~~lk~ll~~~~~lklIlmSATld 180 (1017)
...- .+.+.. .+...+|+||||+.
T Consensus 160 ~~~~----~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 160 SDSS----YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp HHHH----HHHHHH-SSCCEEEEEESS-S
T ss_pred CHHH----HHHHHc-CCCCeEEEEEeCcc
Confidence 3221 233333 66778999999974
No 126
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.28 E-value=4e-12 Score=116.91 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=70.3
Q ss_pred HHHHHHHHhhhcccCCCCCccccccchhhhcccCCChHHHHHHHHcccc-CchhhHHHHHHHhccCCCcccCCCCchHHH
Q 001758 455 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI-GMLREGILLGILMDTQPLPILHPFGDDALF 533 (1017)
Q Consensus 455 ~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lPldp~~~~~ll~~~~~-gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a 533 (1017)
.|++.|..+||||.+ | ++|++|+.|++||++|++|+||+.+..+ +|..++++|+|++++.+ +|..| .+....
T Consensus 1 ~A~~~L~~LgAld~~---~--~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~-~~~~~-~~~~~~ 73 (92)
T smart00847 1 AALELLYELGALDDD---G--RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGD-PFPRP-EKRAEA 73 (92)
T ss_pred CHHHHHHHCCCcCCC---C--CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCC-CcCCc-hHHHHH
Confidence 378999999999873 5 6999999999999999999999999999 89999999999999876 66666 344445
Q ss_pred HHhhCcccCC-CCc
Q 001758 534 AEYTGCYFGG-DGN 546 (1017)
Q Consensus 534 ~~~~~~f~~~-~~D 546 (1017)
...+..|.+. .||
T Consensus 74 ~~~~~~~~~~~~~D 87 (92)
T smart00847 74 DAARRRFASGRESD 87 (92)
T ss_pred HHHHHHccCCCCCC
Confidence 5556667665 565
No 127
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.27 E-value=2.2e-11 Score=118.36 Aligned_cols=101 Identities=28% Similarity=0.414 Sum_probs=88.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCc
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~ 354 (1017)
.+++|||+++...++.+.+.|.. ....+.++||+++..+|..+++.|..+. +|+++|+++++|+|+|+++.||.
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~--- 102 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK--PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVIN--- 102 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE---
Confidence 57999999999999999999975 4578999999999999999999999888 99999999999999999999997
Q ss_pred cceeeecCCCCccccceeecCHhhHHHhcCCCCCCC-CCcEEE
Q 001758 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYR 396 (1017)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~r 396 (1017)
++++. +...+.|++||+||.+ .|.|+.
T Consensus 103 -----~~~~~----------~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 103 -----YDLPW----------SPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred -----eCCCC----------CHHHheecccccccCCCCceEEe
Confidence 56544 5556699999999995 787765
No 128
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.26 E-value=7.8e-11 Score=133.19 Aligned_cols=315 Identities=12% Similarity=0.018 Sum_probs=176.5
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHH----HHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcC---CccCCe
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQV----PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN---CELGGE 99 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqi----p~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~---~~lg~~ 99 (1017)
.-+++|.+++..+-+++++++.-.|.+||++.. ..+++......-++.-|....++...+...-... ..-...
T Consensus 286 ~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~ 365 (1034)
T KOG4150|consen 286 SGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAY 365 (1034)
T ss_pred chhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhcce
Confidence 356889999999999999999999999999421 1222222222333333333322211100000000 000000
Q ss_pred eeEeeccc----c-ccCCCCcEEEECHHHHHHHHHhcCCCc----cCceEEEEeccccccccc-cHHHHHHHHHHh----
Q 001758 100 VGYHIGHS----K-HLSERSKIVFKTAGVLLDEMRDRGLNA----LKYKVIILDEVHERSVES-DLVLVCVKQLLL---- 165 (1017)
Q Consensus 100 VGy~v~~~----~-~~~~~t~Iiv~T~g~Ll~~l~~~~l~l----~~~~~IIIDEaHER~~~~-d~ll~~lk~ll~---- 165 (1017)
|...-+.. . -...+.+++|+.+.+.......+.+.. -...++++||+|-...-+ ......++.++.
T Consensus 366 V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~ 445 (1034)
T KOG4150|consen 366 VEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKG 445 (1034)
T ss_pred eecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHH
Confidence 11000000 0 013467899999998887665433221 155678999999422111 112222333332
Q ss_pred --cCCCceEEEEeecc-Ch-HHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCcccccccccc
Q 001758 166 --KKNDLRVVLMSATA-DI-TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYC 241 (1017)
Q Consensus 166 --~~~~lklIlmSATl-d~-~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~ 241 (1017)
...+++++-.|||+ ++ ...++.|+- ..++++.+.+.+.+...-|- |.
T Consensus 446 F~~~~~~~~~~~~~~~K~~~~~~~~~~~~----~E~~Li~~DGSPs~~K~~V~-------------------------WN 496 (1034)
T KOG4150|consen 446 FEASINMGVYDGDTPYKDRTRLRSELANL----SELELVTIDGSPSSEKLFVL-------------------------WN 496 (1034)
T ss_pred HHhhcCcceEeCCCCcCCHHHHHHHhcCC----cceEEEEecCCCCccceEEE-------------------------eC
Confidence 34678999999997 33 334444432 34666666665433211110 00
Q ss_pred CCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcC----CCCC--cEEEEecCCCCHH
Q 001758 242 SGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP----LSSF--FKVHILHSSVDTE 315 (1017)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~----~~~~--~~v~~lHs~l~~~ 315 (1017)
+...|. .... .........+++.++... +-+++.||+.++-++.+....+. -++. -.|..+.||-..+
T Consensus 497 P~~~P~-~~~~-~~~~i~E~s~~~~~~i~~----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~ 570 (1034)
T KOG4150|consen 497 PSAPPT-SKSE-KSSKVVEVSHLFAEMVQH----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAE 570 (1034)
T ss_pred CCCCCc-chhh-hhhHHHHHHHHHHHHHHc----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchh
Confidence 000000 0000 111111122333333333 34899999999988765544331 1111 1245567899999
Q ss_pred HHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCc
Q 001758 316 QALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (1017)
Q Consensus 316 er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~ 393 (1017)
+|+++++..=+|. +-|+|||.+|-||||.+.+.|+.+|++ .|-+++.|..|||||. .+..
T Consensus 571 DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP------------------~S~aNl~QQ~GRAGRRNk~SL 632 (1034)
T KOG4150|consen 571 DRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFP------------------GSIANLWQQAGRAGRRNKPSL 632 (1034)
T ss_pred hHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCc------------------hhHHHHHHHhccccccCCCce
Confidence 9999988755666 999999999999999999999998873 3778889999999998 4554
Q ss_pred E
Q 001758 394 V 394 (1017)
Q Consensus 394 c 394 (1017)
.
T Consensus 633 a 633 (1034)
T KOG4150|consen 633 A 633 (1034)
T ss_pred E
Confidence 3
No 129
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.24 E-value=3e-11 Score=147.67 Aligned_cols=111 Identities=24% Similarity=0.300 Sum_probs=95.4
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCc
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~ 354 (1017)
+.++|||+++++.++.+++.|... ++.+..+||+++..+|.++++.|+.|. .|+|||+++++|+|+|++++||.
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi--- 516 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--- 516 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE---
Confidence 468999999999999999999854 578899999999999999999999988 99999999999999999999997
Q ss_pred cceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechh
Q 001758 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (1017)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~ 401 (1017)
+|...- ..+-|..+|.||+|||||..+|+++.+++..
T Consensus 517 -----~Dadif-----G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 517 -----LDADKE-----GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred -----eCcccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 553210 1123566789999999999999999888853
No 130
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=1.3e-10 Score=142.60 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATni 336 (1017)
.+.+.+.+...+.. +.+||||+++++.++.+++.|... ++....||+ ...+|+..+..|+++. .|+||||+
T Consensus 584 ~~Ali~~I~~~~~~----grpVLIft~Sve~sE~Ls~~L~~~--gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 584 YNAIVLKVEELQKK----GQPVLVGTASVEVSETLSRMLRAK--RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHhhC----CCCEEEEeCcHHHHHHHHHHHHHc--CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 33444444444432 469999999999999999999854 477788897 5778888899999988 99999999
Q ss_pred ccccccCC---CeeEE-----EeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEechhhh
Q 001758 337 AESSVTIP---KVAYV-----IDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1017)
Q Consensus 337 aetGIdIP---~V~~V-----Id~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1017)
|++|+||+ +|..| |. ++.+. |+..+.||+|||||. .||.+..+++.++.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIg--------terhe----------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILG--------SERHE----------SRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeC--------CCCCc----------hHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999 55433 54 33333 445569999999999 68999999987543
No 131
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.19 E-value=2e-11 Score=108.44 Aligned_cols=72 Identities=29% Similarity=0.404 Sum_probs=64.8
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhH
Q 001758 301 SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQA 379 (1017)
Q Consensus 301 ~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa 379 (1017)
.++.+..+||+++.++|..+++.|..+. +|||||+++++|||+|++++||. |+++. |..++
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~~~~----------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YDPPW----------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SSSES----------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cccCC----------CHHHH
Confidence 4578999999999999999999999988 99999999999999999999998 67654 56667
Q ss_pred HHhcCCCCCCC
Q 001758 380 EQRRGRTGRTC 390 (1017)
Q Consensus 380 ~QR~GRAGR~~ 390 (1017)
.|++||+||.+
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999963
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=1e-09 Score=131.42 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATni 336 (1017)
...+.+-+...|.. +.+|||.+.+.+..+.+...|.+. ++....|++.-...+...+-++ +.. .|.||||+
T Consensus 413 ~~Aii~ei~~~~~~----GrPVLVgt~sI~~SE~ls~~L~~~--gI~h~vLNAk~~~~EA~IIa~A--G~~gaVTIATNM 484 (764)
T PRK12326 413 NDAIVEHIAEVHET----GQPVLVGTHDVAESEELAERLRAA--GVPAVVLNAKNDAEEARIIAEA--GKYGAVTVSTQM 484 (764)
T ss_pred HHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhC--CCcceeeccCchHhHHHHHHhc--CCCCcEEEEecC
Confidence 44444555555543 469999999999999999999854 4566667776443333222222 223 99999999
Q ss_pred ccccccCC---------------CeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEech
Q 001758 337 AESSVTIP---------------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (1017)
Q Consensus 337 aetGIdIP---------------~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~ 400 (1017)
|++|.||- +=-+||-+.++. |+--=.|-.|||||. .||.+-.+.|-
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe------------------SrRID~QLrGRaGRQGDpGss~f~lSl 546 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR------------------SERLDNQLRGRAGRQGDPGSSVFFVSL 546 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCc------------------hHHHHHHHhcccccCCCCCceeEEEEc
Confidence 99999985 122455433322 223338999999999 58987666664
No 133
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.16 E-value=1.2e-10 Score=143.45 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=95.3
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCc
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~ 354 (1017)
+.++|||+++++.++.+++.|.. .++.+..+||+++..+|..+++.|+.|. .|+|||+++++|+|+|++++||.
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~--~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii--- 520 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKE--LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI--- 520 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhh--cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEE---
Confidence 46899999999999999999985 4588999999999999999999999888 99999999999999999999997
Q ss_pred cceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEech
Q 001758 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 400 (1017)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~ 400 (1017)
+|.... ..|-+..+|.||+||+||...|+|+.+++.
T Consensus 521 -----~d~eif-----G~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 521 -----LDADKE-----GFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred -----eCCccc-----ccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 554210 012356778999999999999999999884
No 134
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.15 E-value=1.8e-10 Score=112.31 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=84.8
Q ss_pred cCCcEEEEcCCCCcHhHH-HHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccc-cccCCCCcE
Q 001758 41 ENRVTLIVGETGCGKSSQ-VPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-KHLSERSKI 116 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtq-ip~~lle~~--~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~-~~~~~~t~I 116 (1017)
+++..+|-..+|+|||+. +|.++.+.. ..+++++.|+|.++..+++.+... .+.+..... .....+.-|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~-------~~~~~t~~~~~~~~g~~~i 75 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL-------PVRFHTNARMRTHFGSSII 75 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS-------SEEEESTTSS----SSSSE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC-------CcccCceeeeccccCCCcc
Confidence 567889999999999974 777776543 348999999999999888876431 233332221 123467789
Q ss_pred EEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccCh
Q 001758 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (1017)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld~ 181 (1017)
-+||.+.+.+.+.. +....+|++||+||||--+..+=...++++.+.. ....++|.||||++.
T Consensus 76 ~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 76 DVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-SGEAKVIFMTATPPG 138 (148)
T ss_dssp EEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-TTS-EEEEEESS-TT
T ss_pred cccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh-ccCeeEEEEeCCCCC
Confidence 99999999888776 4456699999999999322222223344555433 345799999999763
No 135
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.15 E-value=2.9e-09 Score=125.17 Aligned_cols=350 Identities=17% Similarity=0.230 Sum_probs=195.5
Q ss_pred CCchHHHHHHHHHHH----cCCcEEEEcCCCCcHhHHHHHHH---Hh-cC-CCcEEEeccHHHHHHHHHHHHHhhcCCcc
Q 001758 26 LPVMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFL---LA-EN-MEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~----~~~~vII~apTGSGKTtqip~~l---le-~~-~~~IivtqPrrlaa~s~a~rva~e~~~~l 96 (1017)
=.+.+||-+-+..+. ++-+.|+.-+-|-|||.|...++ .. .+ .+.-+|+.|...+..-..+.-.-.-+..+
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNV 245 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcce
Confidence 467888988877763 56789999999999997765544 22 22 35777888866554433222111111111
Q ss_pred CCeeeEe-----eccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHH-HHHHHHhcCCCc
Q 001758 97 GGEVGYH-----IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLV-CVKQLLLKKNDL 170 (1017)
Q Consensus 97 g~~VGy~-----v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~-~lk~ll~~~~~l 170 (1017)
-..+|-. ...+-......+|+++|.+|.++.-. .+.-..+++||||||| |.-|..-.+. .++.+.. +
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f~~---~- 318 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAH-RIKNEKSKLSKILREFKT---D- 318 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhh-hhcchhhHHHHHHHHhcc---c-
Confidence 1112211 00011123478999999999998622 1222278999999999 7777654443 3444332 2
Q ss_pred eEEEEeecc---------------------ChHHHHHHHhhc---CCCcee-----------------EEE-EecCCCcc
Q 001758 171 RVVLMSATA---------------------DITKYRDYFRDL---GRGERV-----------------EVL-AIPSTNQR 208 (1017)
Q Consensus 171 klIlmSATl---------------------d~~~~~~~f~~~---~~~~~v-----------------~v~-~~p~~~~~ 208 (1017)
.-+++|.|+ +.+.|..||+.- +....+ .|. ..|....-
T Consensus 319 nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 319 NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 346667773 246777777642 100000 000 01111000
Q ss_pred eeeeeEe------ehHHHHHHHhccCCCCc----ccc----------cccccc---CCC-CCCccccccch--hHHHHHH
Q 001758 209 TIFQRRV------SYLEQVTELLGVDHGMT----SEL----------SSLRYC---SGP-SPSMANAEIKP--EVHKLIH 262 (1017)
Q Consensus 209 ~~~~v~v------~yl~~~~~~l~~~~~~~----~~~----------~~~~~~---~~~-~~~~~~~~~~~--~~~~li~ 262 (1017)
..+ +.. +|-.-....+..-.+.. ... ....|. ..+ .+...+..+.. ....++.
T Consensus 399 ~iy-vgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLD 477 (971)
T KOG0385|consen 399 IIY-VGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLD 477 (971)
T ss_pred eEe-ccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHH
Confidence 000 000 01000000000000000 000 000111 011 11111111100 1122344
Q ss_pred HHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC---c-EEEEEcCccc
Q 001758 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH---R-KVILATNIAE 338 (1017)
Q Consensus 263 ~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g---r-kVIVATniae 338 (1017)
+++..+... +.+||||..=.....-+-.+.. ..++...-+.|+++.++|...++.|... . -.+++|-..+
T Consensus 478 kLL~~Lk~~----GhRVLIFSQmt~mLDILeDyc~--~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGG 551 (971)
T KOG0385|consen 478 KLLPKLKEQ----GHRVLIFSQMTRMLDILEDYCM--LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGG 551 (971)
T ss_pred HHHHHHHhC----CCeEEEeHHHHHHHHHHHHHHH--hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccc
Confidence 555555443 5699999765555544444443 3468888999999999999999999532 2 5689999999
Q ss_pred ccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhc
Q 001758 339 SSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1017)
Q Consensus 339 tGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1017)
-||++-..+.||- ||...+.+. --+|++|+-|.|-..+=++|||+++...+
T Consensus 552 LGINL~aADtVIl--------yDSDWNPQ~-------DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 552 LGINLTAADTVIL--------YDSDWNPQV-------DLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccccccEEEE--------ecCCCCchh-------hhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 9999999999997 888776553 35788999999999999999999987654
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=6.1e-10 Score=136.34 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=80.5
Q ss_pred cCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHH--HHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 001758 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtq--ip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~V 100 (1017)
++.|-+.+|--+++-.+.-++--|..+.||+|||.. +|.++.......+.++.|...+|.+-++.+...+. .+|-.|
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~-~lGl~v 154 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE-FLGLSV 154 (913)
T ss_pred HHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc-ccCCEE
Confidence 344556666666777777677779999999999944 34444344445677777888888888888776554 456667
Q ss_pred eEeeccc----cccCCCCcEEEECHHHH----HH-HHHh--cCCCccCceEEEEecccc
Q 001758 101 GYHIGHS----KHLSERSKIVFKTAGVL----LD-EMRD--RGLNALKYKVIILDEVHE 148 (1017)
Q Consensus 101 Gy~v~~~----~~~~~~t~Iiv~T~g~L----l~-~l~~--~~l~l~~~~~IIIDEaHE 148 (1017)
|.-.+.. ++..-..+|+|+|..-| |+ .+.. ...-...+.++||||+|-
T Consensus 155 ~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 155 GIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 7543221 11122489999998876 22 2211 111124789999999994
No 137
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.10 E-value=9.2e-09 Score=121.66 Aligned_cols=350 Identities=17% Similarity=0.239 Sum_probs=201.1
Q ss_pred chHHHHHHHHHHH----cCCcEEEEcCCCCcHhHHHHHHHHhcC-----CCcEEEeccHHHHHHHHHHHH--HhhcCCcc
Q 001758 28 VMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMV--AKGRNCEL 96 (1017)
Q Consensus 28 i~~~Q~eil~ai~----~~~~vII~apTGSGKTtqip~~lle~~-----~~~IivtqPrrlaa~s~a~rv--a~e~~~~l 96 (1017)
+++||.+.++.+. ++.--||--+-|-|||.|+..||..-. .++.+++.|..++.+-+-+.- .-.+.+.+
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv~i 285 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRVFI 285 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEEEE
Confidence 6899999999885 445679999999999999988875322 247888888777654332211 11111111
Q ss_pred CCeee----Ee-----ec----cccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEecccc-ccccccHHHHHHHH
Q 001758 97 GGEVG----YH-----IG----HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE-RSVESDLVLVCVKQ 162 (1017)
Q Consensus 97 g~~VG----y~-----v~----~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHE-R~~~~d~ll~~lk~ 162 (1017)
....| |. .. ..........|+++|...+. +..+.+.-..++++|+||.|. |..+++.-+.+.+.
T Consensus 286 lh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki 363 (923)
T KOG0387|consen 286 LHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKI 363 (923)
T ss_pred EecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccCCccHHHHHHHhc
Confidence 10000 00 00 11122345678899887763 233333333889999999994 55666666655443
Q ss_pred HHhcCCCceEEEEeeccChHHHHH---HHhhc--CCCcee--------EEEEecCCCcceeeeeEeeh------------
Q 001758 163 LLLKKNDLRVVLMSATADITKYRD---YFRDL--GRGERV--------EVLAIPSTNQRTIFQRRVSY------------ 217 (1017)
Q Consensus 163 ll~~~~~lklIlmSATld~~~~~~---~f~~~--~~~~~v--------~v~~~p~~~~~~~~~v~v~y------------ 217 (1017)
+..+-|+||.|+-.+.+.+ .|+.. |.-... ..+.+.+........+..-|
T Consensus 364 -----~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~P 438 (923)
T KOG0387|consen 364 -----RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISP 438 (923)
T ss_pred -----cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 3446688999974344444 44332 110000 01111111100000111100
Q ss_pred -H-H--------------------------------------HHHHHhccCCC-CccccccccccCCC------------
Q 001758 218 -L-E--------------------------------------QVTELLGVDHG-MTSELSSLRYCSGP------------ 244 (1017)
Q Consensus 218 -l-~--------------------------------------~~~~~l~~~~~-~~~~~~~~~~~~~~------------ 244 (1017)
+ . ++...+.-... ...-....+.|..|
T Consensus 439 ylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~ 518 (923)
T KOG0387|consen 439 YLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQ 518 (923)
T ss_pred HHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccccc
Confidence 0 0 00000000000 00000001111111
Q ss_pred CCCccccccchhHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhc
Q 001758 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC 324 (1017)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f 324 (1017)
.+++....-.....+.+.+++...+.. +.++|+|..++..+.-+...|.. ..++..+-+.|..+...|..+++.|
T Consensus 519 ~~D~~g~~k~sGKm~vl~~ll~~W~kq----g~rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 519 GPDYEGDPKRSGKMKVLAKLLKDWKKQ----GDRVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred CCCcCCChhhcchHHHHHHHHHHHhhC----CCEEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHHHHhh
Confidence 111111111112234455555544443 34899999999998888888874 4568899999999999999999999
Q ss_pred cCCc---EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechh
Q 001758 325 KSHR---KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (1017)
Q Consensus 325 ~~gr---kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~ 401 (1017)
..+. -.|++|-+.+-|+|+-+.+-||- |||..+.+.- .+|.-|+=|-|-...=.+|||.+..
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVII--------fDPdWNPStD-------~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVII--------FDPDWNPSTD-------NQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEE--------ECCCCCCccc-------hHHHHHHHhhcCccceEEEEEecCC
Confidence 8665 56789999999999998888886 9998876644 5667777778877788899999976
Q ss_pred hhc
Q 001758 402 FFG 404 (1017)
Q Consensus 402 ~~~ 404 (1017)
..+
T Consensus 659 TIE 661 (923)
T KOG0387|consen 659 TIE 661 (923)
T ss_pred cHH
Confidence 554
No 138
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.10 E-value=1.8e-08 Score=121.72 Aligned_cols=325 Identities=18% Similarity=0.190 Sum_probs=176.6
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccC-CCCc
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLS-ERSK 115 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~lle~---~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~-~~t~ 115 (1017)
....+.+|.+|.||||||++..++.+. ...+++++..|+.++.+++.++... .+.+.+-|......... ...+
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~---~l~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA---GLSGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc---CCCcceeeeccccccccccccC
Confidence 356789999999999999999999775 3458999999999999999998653 22234445422221121 1235
Q ss_pred EEEECHHHHHHHHHhcCCCccCceEEEEecccc--ccccc------cHHHHHHHHHHhcCCCceEEEEeeccChHHHHHH
Q 001758 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE--RSVES------DLVLVCVKQLLLKKNDLRVVLMSATADITKYRDY 187 (1017)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHE--R~~~~------d~ll~~lk~ll~~~~~lklIlmSATld~~~~~~~ 187 (1017)
-+++..+.|.+... . .+.+|++|||||+-. +.+.. .....+++.++.. .-++|+|-||++ +..-++
T Consensus 124 rLivqIdSL~R~~~-~--~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln-~~tvdF 197 (824)
T PF02399_consen 124 RLIVQIDSLHRLDG-S--LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLN-DQTVDF 197 (824)
T ss_pred eEEEEehhhhhccc-c--cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCC-HHHHHH
Confidence 55666667766432 1 233799999999973 00111 1122334444433 348999999998 445566
Q ss_pred HhhcCCCceeEEEEec----CCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCc-cccccchhHHHHHH
Q 001758 188 FRDLGRGERVEVLAIP----STNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM-ANAEIKPEVHKLIH 262 (1017)
Q Consensus 188 f~~~~~~~~v~v~~~p----~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~ 262 (1017)
+..+...+.+.++.-. +.......-..-.-.+.....++... +.....-.....+.. .......+...-..
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPED----ENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcc----cccccCCCcCCCCccccccccccchhhHHH
Confidence 6666444555544321 11111111111111111122222000 000000000000000 00001111111111
Q ss_pred HHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccc
Q 001758 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSV 341 (1017)
Q Consensus 263 ~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGI 341 (1017)
.+...+. .+.+|-||+.|....+.+++..... ...|+.+.|.-+..+ + + .-++ +|++=|.+...|+
T Consensus 274 ~L~~~L~-----~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~d---v-~--~W~~~~VviYT~~itvG~ 340 (824)
T PF02399_consen 274 ELLARLN-----AGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLED---V-E--SWKKYDVVIYTPVITVGL 340 (824)
T ss_pred HHHHHHh-----CCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCccc---c-c--cccceeEEEEeceEEEEe
Confidence 2222222 1468889999999888888877644 467888887655542 2 1 1345 9999999999999
Q ss_pred cCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhh
Q 001758 342 TIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSF 402 (1017)
Q Consensus 342 dIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~ 402 (1017)
++.+..+=--.++.|...+ +. +..+..|+.||.-.......|.-++...
T Consensus 341 Sf~~~HF~~~f~yvk~~~~----gp--------d~~s~~Q~lgRvR~l~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 341 SFEEKHFDSMFAYVKPMSY----GP--------DMVSVYQMLGRVRSLLDNEIYVYIDASG 389 (824)
T ss_pred ccchhhceEEEEEecCCCC----CC--------cHHHHHHHHHHHHhhccCeEEEEEeccc
Confidence 9974432211112221111 11 1234589999997777888887777543
No 139
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.07 E-value=4.6e-08 Score=123.24 Aligned_cols=128 Identities=15% Similarity=0.054 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcC
Q 001758 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (1017)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATn 335 (1017)
..+.+.+.+..+. .. +|++||+.++.+..+.+++.|... ...+ ...|.-.. +..+++.|+.+. .|+++|+
T Consensus 632 ~~~~~~~~i~~~~-~~---~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~~--~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 632 YAEEIAKRLEELK-QL---QQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNGT--AYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred HHHHHHHHHHHHH-hc---CCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCcc--HHHHHHHHHcCCCeEEEecc
Confidence 3444555555554 22 579999999999999999988643 2334 33332121 344677887765 9999999
Q ss_pred cccccccCC--CeeEEEeCCccceeeecCCCC--------------cccccee--ecCHhhHHHhcCCCCCCC--CCcEE
Q 001758 336 IAESSVTIP--KVAYVIDSCRSLQVFWDVNRK--------------IDSAELV--WVSQSQAEQRRGRTGRTC--DGQVY 395 (1017)
Q Consensus 336 iaetGIdIP--~V~~VId~G~~k~~~yd~~~~--------------~~~l~~~--~iSkasa~QR~GRAGR~~--~G~c~ 395 (1017)
..-+|||+| +...||-.+++ |.+|.. -..+... |-.--.+.|-+||.=|.. .|.++
T Consensus 703 sFwEGVD~p~~~~~~viI~kLP----F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLP----FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 999999997 35555555655 232211 1111111 222345789999999984 57655
Q ss_pred EE
Q 001758 396 RL 397 (1017)
Q Consensus 396 rL 397 (1017)
.|
T Consensus 779 il 780 (820)
T PRK07246 779 IL 780 (820)
T ss_pred EE
Confidence 44
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.00 E-value=1.4e-07 Score=120.84 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCC--CcEEEEecCCCCHHHHHHHHHhccCCc-EEEEE
Q 001758 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1017)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~--~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVA 333 (1017)
..+.+.+.+..+.... +|++|||.++.+..+.+++.|..... ++.+.. . +++...|..+++.|+.+. .|+++
T Consensus 736 ~~~~la~~i~~l~~~~---~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG 810 (928)
T PRK08074 736 YIEEVAAYIAKIAKAT---KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLG 810 (928)
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEe
Confidence 3344445555554433 47999999999999999999874322 222222 2 333334667788887665 99999
Q ss_pred cCcccccccCCC--eeEEEeCCccceeeecCCCC--------------ccccc--eeecCHhhHHHhcCCCCCCC--CCc
Q 001758 334 TNIAESSVTIPK--VAYVIDSCRSLQVFWDVNRK--------------IDSAE--LVWVSQSQAEQRRGRTGRTC--DGQ 393 (1017)
Q Consensus 334 TniaetGIdIP~--V~~VId~G~~k~~~yd~~~~--------------~~~l~--~~~iSkasa~QR~GRAGR~~--~G~ 393 (1017)
|....+|||+|+ .+.||-.|++ |.++.. -..+. ..|...-.+.|-+||.=|.. .|.
T Consensus 811 ~~sFwEGVD~pg~~l~~viI~kLP----F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 811 TSSFWEGIDIPGDELSCLVIVRLP----FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred cCcccCccccCCCceEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 999999999996 4788776765 333321 01110 01223345689999998884 476
Q ss_pred EEEE
Q 001758 394 VYRL 397 (1017)
Q Consensus 394 c~rL 397 (1017)
++.|
T Consensus 887 v~il 890 (928)
T PRK08074 887 VFVL 890 (928)
T ss_pred EEEe
Confidence 5544
No 141
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.98 E-value=8.7e-10 Score=97.78 Aligned_cols=78 Identities=33% Similarity=0.445 Sum_probs=66.6
Q ss_pred HHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccc
Q 001758 292 QWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAE 370 (1017)
Q Consensus 292 l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~ 370 (1017)
+.+.|... ++.+..+||+++.++|..+++.|+.+. +|+++|+++++|+|+|+++.||. ++++
T Consensus 3 l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~~~------- 65 (82)
T smart00490 3 LAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YDLP------- 65 (82)
T ss_pred HHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eCCC-------
Confidence 34445432 578999999999999999999999887 99999999999999999999998 5553
Q ss_pred eeecCHhhHHHhcCCCCCC
Q 001758 371 LVWVSQSQAEQRRGRTGRT 389 (1017)
Q Consensus 371 ~~~iSkasa~QR~GRAGR~ 389 (1017)
.+.+.+.|++||+||.
T Consensus 66 ---~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 66 ---WSPASYIQRIGRAGRA 81 (82)
T ss_pred ---CCHHHHHHhhcccccC
Confidence 4667779999999996
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=2.5e-08 Score=121.27 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc--EEEEEcC
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATN 335 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr--kVIVATn 335 (1017)
...+.+-+...+.. +.+|||.+.+.+..+.+...|... ++....|++.-...+...+- ..|+ .|.||||
T Consensus 412 ~~Aii~ei~~~~~~----gqPVLVgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATN 482 (925)
T PRK12903 412 WKAVVKEVKRVHKK----GQPILIGTAQVEDSETLHELLLEA--NIPHTVLNAKQNAREAEIIA---KAGQKGAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHhc----CCCEEEEeCcHHHHHHHHHHHHHC--CCCceeecccchhhHHHHHH---hCCCCCeEEEecc
Confidence 34444545555543 469999999999999999999854 35555566653333322222 3343 9999999
Q ss_pred cccccccCCCee--------EEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEech
Q 001758 336 IAESSVTIPKVA--------YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (1017)
Q Consensus 336 iaetGIdIP~V~--------~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys~ 400 (1017)
+|++|.||-=-. +||-+.++. |+--=.|-.|||||. .||.+-.+.|-
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEec
Confidence 999999995221 666533322 122227999999999 58976555553
No 143
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.92 E-value=4.6e-08 Score=120.07 Aligned_cols=322 Identities=13% Similarity=0.119 Sum_probs=179.6
Q ss_pred HHHHHHHH-HcCCcEEEEcCCCCcHhHHHHHHHHhcC-CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEee---cc
Q 001758 32 REKIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI---GH 106 (1017)
Q Consensus 32 Q~eil~ai-~~~~~vII~apTGSGKTtqip~~lle~~-~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v---~~ 106 (1017)
|.+.+..+ ..|++|+|.+|+|||||...-..++... ..+++...|....+..++..+...++.-.|..+--.. ..
T Consensus 1148 qtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~ 1227 (1674)
T KOG0951|consen 1148 QTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSL 1227 (1674)
T ss_pred eEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcccc
Confidence 33344333 2568999999999999988777777532 3478888898888777777666655433443222111 12
Q ss_pred ccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccc-cc---cHHHHHHHHHHhcCCCceEEEEeecc-Ch
Q 001758 107 SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSV-ES---DLVLVCVKQLLLKKNDLRVVLMSATA-DI 181 (1017)
Q Consensus 107 ~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~-~~---d~ll~~lk~ll~~~~~lklIlmSATl-d~ 181 (1017)
+.+.....+|+++||+.+-.. + ....+++.|.||.|.-+- +. ..+..+.......-.++|++.+|..+ ++
T Consensus 1228 ~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana 1302 (1674)
T KOG0951|consen 1228 DLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANA 1302 (1674)
T ss_pred chHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccc
Confidence 233456789999999998654 2 344899999999995320 00 11111111111223567888888875 54
Q ss_pred HHHHHHHhhcCCCceeEEEEecCCCcc-----eeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchh
Q 001758 182 TKYRDYFRDLGRGERVEVLAIPSTNQR-----TIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (1017)
Q Consensus 182 ~~~~~~f~~~~~~~~v~v~~~p~~~~~-----~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1017)
..+ .+. . ...++..+...+. ....+.+.+.+.. ...+..-
T Consensus 1303 ~d~---ig~---s-~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~----------------------------~~am~~~ 1347 (1674)
T KOG0951|consen 1303 RDL---IGA---S-SSGVFNFSPSVRPVPLEIHIQSVDISHFESR----------------------------MLAMTKP 1347 (1674)
T ss_pred hhh---ccc---c-ccceeecCcccCCCceeEEEEEeccchhHHH----------------------------HHHhhhh
Confidence 444 211 1 1112222111111 1111111111100 0001011
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCC--------------------CCCcEEEEecCCCCHHH
Q 001758 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--------------------SSFFKVHILHSSVDTEQ 316 (1017)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~--------------------~~~~~v~~lHs~l~~~e 316 (1017)
.+. .+..+.. .+++.+||+|+++++..++..+-.. ...+.-.+-|-+|+..+
T Consensus 1348 ~~~---ai~~~a~-----~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d 1419 (1674)
T KOG0951|consen 1348 TYT---AIVRHAG-----NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSND 1419 (1674)
T ss_pred HHH---HHHHHhc-----CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcch
Confidence 111 2222221 2568999999999988766543210 00111112288898888
Q ss_pred HHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEE
Q 001758 317 ALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVY 395 (1017)
Q Consensus 317 r~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~ 395 (1017)
+..+...|..|. .|.|...- -.|+-.-.--+|| .| ..+||.... .+ ...+-+...|+.|+|.| .|+|+
T Consensus 1420 ~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-mg---t~~ydg~e~--~~--~~y~i~~ll~m~G~a~~--~~k~v 1488 (1674)
T KOG0951|consen 1420 QEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-MG---TQYYDGKEH--SY--EDYPIAELLQMVGLASG--AGKCV 1488 (1674)
T ss_pred HHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-ec---ceeeccccc--cc--ccCchhHHHHHhhhhcC--CccEE
Confidence 888888898888 77666544 6666554333333 22 344776543 12 23377899999999998 78998
Q ss_pred EEech---hhhccccccCCc
Q 001758 396 RLVTK---SFFGTLEDHECP 412 (1017)
Q Consensus 396 rLys~---~~~~~l~~~~~P 412 (1017)
.+... ..|..+.....|
T Consensus 1489 i~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1489 IMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred EEecCchHHHHHHhccCcCc
Confidence 88764 344555555555
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.91 E-value=1.6e-08 Score=123.66 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCC--CHHHHHHHHHhccCCc-EEEEEcC
Q 001758 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSV--DTEQALMAMKICKSHR-KVILATN 335 (1017)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l--~~~er~~i~~~f~~gr-kVIVATn 335 (1017)
..|.+-+...+.. +.+|||-+.+.+..+.+...|... ++....|++.- ...|...|-+ .+.. .|.||||
T Consensus 411 ~AI~~ei~~~~~~----grPVLIgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATN 482 (870)
T CHL00122 411 RAIADECLQMHQT----GRPILIGTTTIEKSELLSQLLKEY--RLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATN 482 (870)
T ss_pred HHHHHHHHHHHhc----CCCEEEeeCCHHHHHHHHHHHHHc--CCccceeeCCCccchhHHHHHHh--cCCCCcEEEecc
Confidence 3344444444443 469999999999999999999854 35556677652 1333333322 2233 9999999
Q ss_pred cccccccCC
Q 001758 336 IAESSVTIP 344 (1017)
Q Consensus 336 iaetGIdIP 344 (1017)
+|++|.||-
T Consensus 483 MAGRGTDI~ 491 (870)
T CHL00122 483 MAGRGTDII 491 (870)
T ss_pred ccCCCcCee
Confidence 999999983
No 145
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.84 E-value=5.2e-08 Score=111.20 Aligned_cols=109 Identities=23% Similarity=0.289 Sum_probs=92.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCcccccccCCCeeEEEeCCc
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniaetGIdIP~V~~VId~G~ 354 (1017)
+.++||-+=|++.+|.+.++|.. .++++.++||.+..-+|.++++..+.|. .|||.-|.+-+|+|+|.|..|.-
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e--~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI--- 520 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKE--LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--- 520 (663)
T ss_pred CCeEEEEeehHHHHHHHHHHHHh--cCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE---
Confidence 36899999999999999999985 4589999999999999999999999999 99999999999999999999975
Q ss_pred cceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEec
Q 001758 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVT 399 (1017)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys 399 (1017)
.|.... .+ .=|-.+..|-+|||.|.-.|+++...+
T Consensus 521 -----lDADKe--GF---LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 521 -----LDADKE--GF---LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred -----eecCcc--cc---ccccchHHHHHHHHhhccCCeEEEEch
Confidence 343321 11 124556699999999999999986544
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=1.5e-07 Score=115.04 Aligned_cols=124 Identities=18% Similarity=0.191 Sum_probs=73.1
Q ss_pred cCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHH--HHHHHhcC-CCcEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 001758 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqi--p~~lle~~-~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~ 99 (1017)
++.|-+.++--+++-++.-++--|..+.||-|||+.+ |.++.... .+.-++|... -+|..-++.+..... -+|-+
T Consensus 79 ~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNd-YLA~RDae~m~~vy~-~LGLt 156 (939)
T PRK12902 79 KRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVND-YLARRDAEWMGQVHR-FLGLS 156 (939)
T ss_pred HHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCH-HHHHhHHHHHHHHHH-HhCCe
Confidence 4556666777778888777777899999999999544 44443332 2344555554 444444444433221 34555
Q ss_pred eeEeecc----ccccCCCCcEEEECHHHH-----HHHHHhc--CCCccCceEEEEecccc
Q 001758 100 VGYHIGH----SKHLSERSKIVFKTAGVL-----LDEMRDR--GLNALKYKVIILDEVHE 148 (1017)
Q Consensus 100 VGy~v~~----~~~~~~~t~Iiv~T~g~L-----l~~l~~~--~l~l~~~~~IIIDEaHE 148 (1017)
||.-... +++..=.++|+|+|..-| ...|... ......+.+.|||||+-
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 6644221 122233689999998666 3334321 11223788899999984
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=98.80 E-value=2.3e-07 Score=110.24 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=62.4
Q ss_pred hcCCCCCcEEEEec--CCCCHHHHHHHHH---hccCCc-EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCcccc
Q 001758 296 MKPLSSFFKVHILH--SSVDTEQALMAMK---ICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSA 369 (1017)
Q Consensus 296 L~~~~~~~~v~~lH--s~l~~~er~~i~~---~f~~gr-kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l 369 (1017)
|.....++.+.+=| |.|...+|...+. .|.... ||+-..-.+.+|||+|..+-||- ||++..+-..
T Consensus 491 lk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF--------f~pr~smVDI 562 (1518)
T COG4889 491 LKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF--------FDPRSSMVDI 562 (1518)
T ss_pred HHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE--------ecCchhHHHH
Confidence 33334456665555 7888888865543 345556 88888889999999999999997 9998866555
Q ss_pred ceeecCHhhHHHhcCCCCCCCCCcEE
Q 001758 370 ELVWVSQSQAEQRRGRTGRTCDGQVY 395 (1017)
Q Consensus 370 ~~~~iSkasa~QR~GRAGR~~~G~c~ 395 (1017)
.|-.||..|..+|+-|
T Consensus 563 ----------VQaVGRVMRKa~gK~y 578 (1518)
T COG4889 563 ----------VQAVGRVMRKAKGKKY 578 (1518)
T ss_pred ----------HHHHHHHHHhCcCCcc
Confidence 9999999999888754
No 148
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.73 E-value=2e-07 Score=114.89 Aligned_cols=129 Identities=20% Similarity=0.227 Sum_probs=97.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccC---Cc-EEEEEcCcccccccCCCeeEEEe
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS---HR-KVILATNIAESSVTIPKVAYVID 351 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~---gr-kVIVATniaetGIdIP~V~~VId 351 (1017)
+.+||||..=+....-++++|.. .++..--|-|++..+.|+..++.|.. .+ -.|+||-..+-|||+-..+.||.
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL~~--r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYLSL--RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHHHH--cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 57999999999988999999973 45777788999999999999999942 34 88999999999999998888886
Q ss_pred CCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC---CCCcEEEEechhhhcc-ccccCCchhhhccHHHHHHHHH
Q 001758 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFFGT-LEDHECPAILRLSLRLQVLLIC 427 (1017)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~---~~G~c~rLys~~~~~~-l~~~~~PEI~r~~L~~~vL~l~ 427 (1017)
||...+.+.= +|-..||-|. ..=.+|||+|+..+++ |-+-. -+..-|+..|+|..
T Consensus 777 --------FDSDWNPQND----------LQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~KmvLD~aVIQ~m 835 (1373)
T KOG0384|consen 777 --------FDSDWNPQND----------LQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKMVLDHAVIQRM 835 (1373)
T ss_pred --------eCCCCCcchH----------HHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHhhhHHHHHHhh
Confidence 8887776644 4545555554 4567999999987753 21110 12345777777763
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.72 E-value=2.1e-07 Score=114.04 Aligned_cols=133 Identities=8% Similarity=0.008 Sum_probs=84.1
Q ss_pred EEEEcCCCCcHhHHHHHHH---HhcCCCcEEEeccHHHHHHHHHHHHHhhcC-CccCCeeeEeec---------cccccC
Q 001758 45 TLIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRN-CELGGEVGYHIG---------HSKHLS 111 (1017)
Q Consensus 45 vII~apTGSGKTtqip~~l---le~~~~~IivtqPrrlaa~s~a~rva~e~~-~~lg~~VGy~v~---------~~~~~~ 111 (1017)
.|..+-+|||||..+.+.+ +..+. .++++.|.-.++.++.+++...++ ..+ +-|.-. +.....
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~v---~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGDV---AVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCcE---EEECCCCCHHHHHHHHHHHhC
Confidence 3445557999997766665 44443 577778888888899999988765 222 222211 112235
Q ss_pred CCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHH----HHHHHHhcCCCceEEEEeeccChHHHHHH
Q 001758 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLV----CVKQLLLKKNDLRVVLMSATADITKYRDY 187 (1017)
Q Consensus 112 ~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~----~lk~ll~~~~~lklIlmSATld~~~~~~~ 187 (1017)
+..+|+++|-.-+.. .+.++++|||||=|+-+...+-... -+-.+.....+..+|+.|||.+.+.+...
T Consensus 239 G~~~IViGtRSAvFa-------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAVFA-------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeEEe-------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 678999999755532 3459999999999974433221100 01112233467899999999987776553
Q ss_pred H
Q 001758 188 F 188 (1017)
Q Consensus 188 f 188 (1017)
-
T Consensus 312 ~ 312 (665)
T PRK14873 312 E 312 (665)
T ss_pred h
Confidence 3
No 150
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.70 E-value=4.3e-06 Score=101.88 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=77.4
Q ss_pred EEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc---EE-EEEcCcccccccCCCeeEEEeCCcc
Q 001758 280 LVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KV-ILATNIAESSVTIPKVAYVIDSCRS 355 (1017)
Q Consensus 280 LVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kV-IVATniaetGIdIP~V~~VId~G~~ 355 (1017)
.|.+.......++.+.+.... ++.++.|||.|+..||+.+++.|..-. +| +++|-..+.||++=|..-||-
T Consensus 598 ~v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil---- 672 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL---- 672 (776)
T ss_pred EEEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE----
Confidence 344455566666666665544 799999999999999999999996432 44 566778899999988888886
Q ss_pred ceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhh
Q 001758 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1017)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~ 403 (1017)
||+..+...- .+|+=|+=|-|-.++=..|||.+....
T Consensus 673 ----~D~dWNPa~d-------~QAmaR~~RdGQKk~v~iYrLlatGti 709 (776)
T KOG0390|consen 673 ----FDPDWNPAVD-------QQAMARAWRDGQKKPVYIYRLLATGTI 709 (776)
T ss_pred ----eCCCCCchhH-------HHHHHHhccCCCcceEEEEEeecCCCc
Confidence 9988876544 233444444454567788999986543
No 151
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.69 E-value=1.4e-05 Score=97.14 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=70.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccC----C-cEEEEEcCcccccccC-------
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS----H-RKVILATNIAESSVTI------- 343 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~----g-rkVIVATniaetGIdI------- 343 (1017)
+|.+||-..++..++.+++.|..... +. +...|..+. +...++.|+. + ..|+++|+.+-+|||+
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l~-~~-~l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGIP-AE-IVIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhcC-CC-EEEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 57999999999999999999864322 33 334554432 2234555553 4 4999999999999999
Q ss_pred -C--CeeEEEeCCccceeeecCC--------CCccccceeecCHhhHHHhcCCCCCC--C--CCcEEEEec
Q 001758 344 -P--KVAYVIDSCRSLQVFWDVN--------RKIDSAELVWVSQSQAEQRRGRTGRT--C--DGQVYRLVT 399 (1017)
Q Consensus 344 -P--~V~~VId~G~~k~~~yd~~--------~~~~~l~~~~iSkasa~QR~GRAGR~--~--~G~c~rLys 399 (1017)
| .+..||-.-++=.. -|+. .+...+...|-..-.+.|-+||.=|. . .|....|=+
T Consensus 546 ~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred CCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 2 47777653332111 1111 11111112222234567888888887 3 465555443
No 152
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.51 E-value=1.6e-05 Score=90.29 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=61.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc---EEEEEcCcccccccCCCeeEEEe
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVID 351 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVIVATniaetGIdIP~V~~VId 351 (1017)
+.+.|||+.-..-.+.+...+.. .++..+-+.|..++.+|....+.|.... --|++-..+.+|+|+...+.||-
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~--r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNK--RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHH--cCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 56899999998888888888874 4466778899999999999999997554 34677788999999999999985
No 153
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.32 E-value=3.1e-07 Score=101.95 Aligned_cols=71 Identities=27% Similarity=0.561 Sum_probs=57.0
Q ss_pred cccCcccCcCCCCCCCcccccccccccccccCCCCCCCCCCCCC-CCCcccccccccccCCCCCCCCCCCCC
Q 001758 715 EDVSGNQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQ-AKRPACKFFYSLQGCRNGDSCIFSHDL 785 (1017)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~C~~f~~G~C~~G~~C~f~H~~~-~~~~~C~~f~~~g~C~~G~~C~f~H~~ 785 (1017)
....+.+.+.+.......+..+||||+.|.|++||.|.|+|+.. .+.+.|.||+..|.|.+|..|.|.|..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 58 CERGPICPKSHNDVSDSRGKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred ccCCCCCccccCCccccCCceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCC
Confidence 33444445555444346788889999999999999999999863 356689999999999999999999977
No 154
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.30 E-value=4.6e-07 Score=103.46 Aligned_cols=61 Identities=31% Similarity=0.645 Sum_probs=51.1
Q ss_pred CCCccccccccccc-ccccCC-CCCCCCCCCCC----------------CCCcccccccccccCCCCCCCCCCCCCCCC
Q 001758 728 SETPGEAPLCVYFI-NGSCNR-GTGCPFSHSLQ----------------AKRPACKFFYSLQGCRNGDSCIFSHDLGQP 788 (1017)
Q Consensus 728 ~~~~~~~~~C~~f~-~G~C~~-G~~C~f~H~~~----------------~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~ 788 (1017)
.....++++|++|. .|.|++ |++|+|.|... .++.+|.+|..+|.|+||.+|+|.|.....
T Consensus 126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred CcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccc
Confidence 33456889999999 599999 99999999761 235689999888999999999999987533
No 155
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.27 E-value=4e-05 Score=95.02 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=82.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHhc-CCCCCcEEEEecCCCCHHHHHHHHHhccCCc---EEEEEcCcccccccCCCeeEEEe
Q 001758 276 EKSILVFLPTYYALEQQWHLMK-PLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVID 351 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~-~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVIVATniaetGIdIP~V~~VId 351 (1017)
+.++||||.-+..+.-+.+-|. ...+.+...-|.|..++.+|.++.+.|.++. -.+++|-+.+-|+|+-+.+.||-
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 4689999999988887766554 3344455567899999999999999998774 56788899999999999999995
Q ss_pred CCccceeeecCCCC-ccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhh
Q 001758 352 SCRSLQVFWDVNRK-IDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1017)
Q Consensus 352 ~G~~k~~~yd~~~~-~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~ 403 (1017)
++...+ +..+ +|+-|+-|.|..+-=-+|||+++...
T Consensus 1420 --------vEHDWNPMrDL--------QAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1420 --------VEHDWNPMRDL--------QAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred --------EecCCCchhhH--------HHHHHHHhhcCceeeeeeeehhcccH
Confidence 444333 2233 34455555555455568999887544
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.21 E-value=2.1e-05 Score=100.74 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=80.9
Q ss_pred CcEEEEcCCCCcHhHH---HHHHHHhcC-CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeec-ccccc-CCCCcE
Q 001758 43 RVTLIVGETGCGKSSQ---VPQFLLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG-HSKHL-SERSKI 116 (1017)
Q Consensus 43 ~~vII~apTGSGKTtq---ip~~lle~~-~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~-~~~~~-~~~t~I 116 (1017)
+.-+|.=-||||||.. +...+++.. ...|+++.-|+-+-.|+.+.+...-....-..-.-+.. ..... .....|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 4589999999999933 344455543 34788999999998888776655221110000000000 01111 235689
Q ss_pred EEECHHHHHHHHHhc-CC-CccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeecc
Q 001758 117 VFKTAGVLLDEMRDR-GL-NALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1017)
Q Consensus 117 iv~T~g~Ll~~l~~~-~l-~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATl 179 (1017)
+|+|-+.|-...... .. ...+==+||+|||| |+-..+ +...++..+ ++...+++|.|+
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~-~~~~~~~~~---~~a~~~gFTGTP 413 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGE-LAKLLKKAL---KKAIFIGFTGTP 413 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechh-hccccH-HHHHHHHHh---ccceEEEeeCCc
Confidence 999999998776543 11 11244578999999 886643 444444444 447899999996
No 157
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.12 E-value=7.9e-05 Score=89.13 Aligned_cols=112 Identities=22% Similarity=0.228 Sum_probs=86.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc---EEEEEcCcccccccCCCeeEEEeC
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVIVATniaetGIdIP~V~~VId~ 352 (1017)
+.+||||..=.....-+-..|.. .++...-|-|...-..|+.++..|.... -.|++|-..+-||++-..+.||-
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~--l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi- 853 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDT--LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII- 853 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHh--cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE-
Confidence 46899997765555544445552 3477888999999999999999997765 66899999999999999999985
Q ss_pred CccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhc
Q 001758 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1017)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1017)
||..-+.- ---+|.-|+-|.|.++|=.+|||+++...+
T Consensus 854 -------hD~dFNP~-------dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 854 -------HDIDFNPY-------DDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred -------eecCCCCc-------ccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 55443321 223567888888888999999999987554
No 158
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.04 E-value=3.8e-05 Score=85.69 Aligned_cols=141 Identities=22% Similarity=0.243 Sum_probs=70.5
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHH---hcCCC----cEEEeccHHHHHHHHHHHHHhhcCC-ccCCeeeEeeccc-----
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLL---AENME----PILCTQPRRFAVVAVAKMVAKGRNC-ELGGEVGYHIGHS----- 107 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~ll---e~~~~----~IivtqPrrlaa~s~a~rva~e~~~-~lg~~VGy~v~~~----- 107 (1017)
..+..|++-++|+|||.++..++. +.... .++|+.|..++ .+....+...... .+ ..+-|. +..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~-~~W~~E~~~~~~~~~~-~v~~~~-~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLL-SQWKEEIEKWFDPDSL-RVIIYD-GDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTH-HHHHHHHHHHSGT-TS--EEEES-SSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchh-hhhhhhhccccccccc-cccccc-cccccccc
Confidence 446899999999999966665554 33322 36777776444 3444444443321 11 112121 111
Q ss_pred -cccCCCCcEEEECHHHHHHHHH---hcCCCccCceEEEEeccccc-cccccHHHHHHHHHHhcCCCceEEEEeeccChH
Q 001758 108 -KHLSERSKIVFKTAGVLLDEMR---DRGLNALKYKVIILDEVHER-SVESDLVLVCVKQLLLKKNDLRVVLMSATADIT 182 (1017)
Q Consensus 108 -~~~~~~t~Iiv~T~g~Ll~~l~---~~~l~l~~~~~IIIDEaHER-~~~~d~ll~~lk~ll~~~~~lklIlmSATld~~ 182 (1017)
.......+++++|.+.+..... .+.+...++++|||||+|.- ...+.. .+.+.... ...+++||||+-.+
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~----~~~l~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKR----YKALRKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHH----HHHHHCCC-ECEEEEE-SS-SSS
T ss_pred cccccccceeeeccccccccccccccccccccccceeEEEecccccccccccc----cccccccc-cceEEeeccccccc
Confidence 2334578899999999981100 00011126999999999952 222221 22222222 45788999997444
Q ss_pred HHHHHHh
Q 001758 183 KYRDYFR 189 (1017)
Q Consensus 183 ~~~~~f~ 189 (1017)
...++++
T Consensus 176 ~~~dl~~ 182 (299)
T PF00176_consen 176 SLEDLYS 182 (299)
T ss_dssp GSHHHHH
T ss_pred ccccccc
Confidence 4444443
No 159
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.97 E-value=1.1e-05 Score=78.55 Aligned_cols=116 Identities=21% Similarity=0.295 Sum_probs=65.5
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHHHhc--------CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccC
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFLLAE--------NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLS 111 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~lle~--------~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~ 111 (1017)
++++.++|.|++|+|||+++-.++.+. ....+.+..|.......+...+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999988887754 33345566555554566777777766543222
Q ss_pred CCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 112 ~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
-.|...+.+.+... +......+|||||+|+-. .+-.+..++.+.. ..++++|+.+-.
T Consensus 69 ------~~~~~~l~~~~~~~-l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDA-LDRRRVVLLVIDEADHLF--SDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHH-HHHCTEEEEEEETTHHHH--THHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHH-HHhcCCeEEEEeChHhcC--CHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 11333333333221 001133699999999532 3555566666655 666777766544
No 160
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.94 E-value=5.6e-05 Score=94.53 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=62.1
Q ss_pred CCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccCh-----HHHHH
Q 001758 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI-----TKYRD 186 (1017)
Q Consensus 112 ~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld~-----~~~~~ 186 (1017)
....|+++||.+|..-+..+.+.+..++.||||||| |...+--..-+++.+...+++.-|.+|||.+.. +.+.+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~ 84 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLET 84 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHH
Confidence 467899999999999999888888899999999999 666655444555666667788889999999743 45666
Q ss_pred HHhhc
Q 001758 187 YFRDL 191 (1017)
Q Consensus 187 ~f~~~ 191 (1017)
....+
T Consensus 85 vmk~L 89 (814)
T TIGR00596 85 KMRNL 89 (814)
T ss_pred HHHHh
Confidence 65554
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.87 E-value=0.00011 Score=91.37 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATni 336 (1017)
+..+.+-+..++.. +.+|||-+.+.+..+.+.++|...+ +.--.|++.....+...+-++ +.. .|.||||+
T Consensus 614 ~~Aii~ei~~~~~~----GrPVLVGT~SVe~SE~lS~~L~~~g--I~H~VLNAK~h~~EAeIVA~A--G~~GaVTIATNM 685 (1112)
T PRK12901 614 YNAVIEEITELSEA----GRPVLVGTTSVEISELLSRMLKMRK--IPHNVLNAKLHQKEAEIVAEA--GQPGTVTIATNM 685 (1112)
T ss_pred HHHHHHHHHHHHHC----CCCEEEEeCcHHHHHHHHHHHHHcC--CcHHHhhccchhhHHHHHHhc--CCCCcEEEeccC
Confidence 44555555666653 4699999999999999999998543 443344554333333333222 223 99999999
Q ss_pred ccccccCC--------CeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcEEEEec
Q 001758 337 AESSVTIP--------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (1017)
Q Consensus 337 aetGIdIP--------~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~rLys 399 (1017)
|++|-||- |=-+||-+.++. |+---.|-.|||||. .||.+-.+.|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHE------------------SRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCC------------------cHHHHHHHhcccccCCCCCcceEEEE
Confidence 99999996 223555433322 333338999999999 5898655555
No 162
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.85 E-value=4.5e-05 Score=80.39 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHcC--CcEEEEcCCCCcHhHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEe
Q 001758 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~--~~vII~apTGSGKTtqip~~l--le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~ 103 (1017)
+.+-|.+++..+..+ +.++|.|+.|+||||.+-... ++....+|+++.|+.-++..+.+... ..
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~----~~-------- 69 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTG----IE-------- 69 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHT----S---------
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhC----cc--------
Confidence 467899999999643 588999999999998765432 22233577777787777766665521 11
Q ss_pred eccccccCCCCcEEEECHHHHHHHHHhcC----CCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 104 v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~----l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
..|-..++....... ......++||||||- .++...+..+++.+. ..+.|+|++-=+
T Consensus 70 --------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~--~~~~klilvGD~ 130 (196)
T PF13604_consen 70 --------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAK--KSGAKLILVGDP 130 (196)
T ss_dssp --------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS---T-T-EEEEEE-T
T ss_pred --------------hhhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHH--hcCCEEEEECCc
Confidence 111111111000000 002367899999998 455555555554432 235677777554
No 163
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.84 E-value=5.9e-05 Score=79.42 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=78.9
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHh---cCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLA---ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle---~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
++++++||||+||||.+.++... .+.+ .++.+-+.|+.|...-+..++.++.++-. .+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~~~---------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ARTES---------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SSTTS----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch-----hhcch----------
Confidence 47899999999999988876532 2333 57788889999999999999977754311 01100
Q ss_pred ECHHH-HHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc-CCCceEEEEeeccChHHHH
Q 001758 119 KTAGV-LLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADITKYR 185 (1017)
Q Consensus 119 ~T~g~-Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~-~~~lklIlmSATld~~~~~ 185 (1017)
.|.- +.+.+... ...++++|+||-+- |+....-++.-++.+... .++-.+++||||...+.+.
T Consensus 67 -~~~~~~~~~l~~~--~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 67 -DPAEIAREALEKF--RKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp -CHHHHHHHHHHHH--HHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred -hhHHHHHHHHHHH--hhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 1223 32333321 11268999999998 665554455555554443 5677889999998655443
No 164
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00021 Score=82.55 Aligned_cols=126 Identities=17% Similarity=0.299 Sum_probs=81.0
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhc-------CCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCC
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAE-------NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSER 113 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~-------~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~ 113 (1017)
.++++++||||+||||.+..+.... +.. .++-+-+-|.+|...-+.+++.++.++ .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv----~------------ 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV----K------------ 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce----E------------
Confidence 3689999999999998887765421 222 355666778888777777777655442 0
Q ss_pred CcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc-CCC-ceEEEEeeccChHHHHHHHhhc
Q 001758 114 SKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KND-LRVVLMSATADITKYRDYFRDL 191 (1017)
Q Consensus 114 t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~-~~~-lklIlmSATld~~~~~~~f~~~ 191 (1017)
...++.-+...+.. ..++++||||++. |+......+.-++.++.. .++ -.++++|||...+.+.+.|...
T Consensus 238 ---~~~~~~~l~~~L~~----~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 238 ---AIESFKDLKEEITQ----SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred ---eeCcHHHHHHHHHH----hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 11134444444432 2389999999999 665332234444455443 334 4789999999888888777653
No 165
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.81 E-value=1.7e-05 Score=84.79 Aligned_cols=102 Identities=23% Similarity=0.400 Sum_probs=70.2
Q ss_pred ccccccccc-ccccCC---CCCCCCC---CCC----------CCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 001758 733 EAPLCVYFI-NGSCNR---GTGCPFS---HSL----------QAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSF 795 (1017)
Q Consensus 733 ~~~~C~~f~-~G~C~~---G~~C~f~---H~~----------~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~~~~~~ 795 (1017)
.+++|.-|. .|.|.+ |+.|.|+ |.. ..++.||+.|...|+|.+|.+|.|.|..........-.
T Consensus 229 ~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~ 308 (351)
T COG5063 229 NPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEA 308 (351)
T ss_pred CHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhccccccc
Confidence 348899999 599999 9999999 987 23567999999999999999999999876554333211
Q ss_pred CCCCCccccccccccccccCCCCCcccccCCccccccccc
Q 001758 796 TCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANL 835 (1017)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 835 (1017)
...--.+..........+|.+++ .-..++.++++++...
T Consensus 309 ~~~y~~~~crt~~~~g~~p~g~~-~c~~~dkkn~~~s~~~ 347 (351)
T COG5063 309 SLGYLDGPCRTRAKGGAFPSGGA-VCKSFDKKNLDFSVKA 347 (351)
T ss_pred cccccccccccccccCccCCCCc-hhhccccchhhhhhhh
Confidence 00011111122333455666665 4555888899887643
No 166
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.81 E-value=3.9e-06 Score=88.97 Aligned_cols=57 Identities=37% Similarity=0.932 Sum_probs=44.1
Q ss_pred cccccccccccccccCCCCCCCCCCCCCC-------------CC------------------------cccccccc----
Q 001758 731 PGEAPLCVYFINGSCNRGTGCPFSHSLQA-------------KR------------------------PACKFFYS---- 769 (1017)
Q Consensus 731 ~~~~~~C~~f~~G~C~~G~~C~f~H~~~~-------------~~------------------------~~C~~f~~---- 769 (1017)
..+..+|-||..|.|.+|+.|+|||+... +. .+|+||.-
T Consensus 89 DPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~ 168 (343)
T KOG1763|consen 89 DPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVEN 168 (343)
T ss_pred CchHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc
Confidence 34677899999999999999999999811 01 17999942
Q ss_pred --cc---cCCCCC-CCCCCCCCCC
Q 001758 770 --LQ---GCRNGD-SCIFSHDLGQ 787 (1017)
Q Consensus 770 --~g---~C~~G~-~C~f~H~~~~ 787 (1017)
.| .|.+|. .|.|.|.+..
T Consensus 169 ~kYGWfW~CPnGg~~C~YrHaLP~ 192 (343)
T KOG1763|consen 169 GKYGWFWECPNGGDKCIYRHALPE 192 (343)
T ss_pred CCccceeECCCCCCeeeeeecCCc
Confidence 23 499974 9999998843
No 167
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.78 E-value=3e-05 Score=79.31 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=110.2
Q ss_pred cccCCccccccccccccCC-CccccccCCCCCccccccccchhHHhhccccccchhcccCCC------CCCCCcceeEEE
Q 001758 822 LLLDDTDMHFSANLACLYD-PSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGD------NPIPWKEVKCVL 894 (1017)
Q Consensus 822 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 894 (1017)
|+.+|-+++||.+|+.... +..|+||+--+......-=+.+..++..|..+--.+.=+=.. ..+...+..+|+
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 3568889999999999877 788888877666555444456667777777666655533222 233457889999
Q ss_pred ecCCccc-----cccchhHHHHHHHHHHHHHHHHHHHhhccCcEEEEEEcccee-ehhhHHhhhccceeecccCCCCCcc
Q 001758 895 WYPSLES-----YSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKF-AQLQVEKLARDSFFFLSESFPFDEM 968 (1017)
Q Consensus 895 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 968 (1017)
|+++..- ...+-.-.+.||..||+. |-++|+. +=+|.||+.+... ..-|+|++|++.-|.|.++++||..
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~---~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~ 156 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKP---DGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPS 156 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCC---CCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHH
Confidence 9998876 334445667899999995 5566665 7899999999876 8999999999999999999999987
Q ss_pred cc
Q 001758 969 SF 970 (1017)
Q Consensus 969 ~~ 970 (1017)
.|
T Consensus 157 ~y 158 (166)
T PF10354_consen 157 DY 158 (166)
T ss_pred HC
Confidence 66
No 168
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.76 E-value=6.1e-06 Score=57.69 Aligned_cols=24 Identities=38% Similarity=1.050 Sum_probs=13.5
Q ss_pred cccccccccc-cccCCCCCCCCCCC
Q 001758 733 EAPLCVYFIN-GSCNRGTGCPFSHS 756 (1017)
Q Consensus 733 ~~~~C~~f~~-G~C~~G~~C~f~H~ 756 (1017)
++++|++|.. |.|++|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 4556666664 66777777777665
No 169
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.72 E-value=8.4e-06 Score=56.99 Aligned_cols=26 Identities=38% Similarity=0.833 Sum_probs=20.5
Q ss_pred CCcccccccccccCCCCCCCCCCCCC
Q 001758 760 KRPACKFFYSLQGCRNGDSCIFSHDL 785 (1017)
Q Consensus 760 ~~~~C~~f~~~g~C~~G~~C~f~H~~ 785 (1017)
++.+|++|...|.|++|++|+|+|+.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 57889999888999999999999973
No 170
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.69 E-value=0.00012 Score=79.86 Aligned_cols=55 Identities=31% Similarity=0.738 Sum_probs=49.8
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCC---CcccccccccccCCCCCCCCCCCCC
Q 001758 731 PGEAPLCVYFINGSCNRGTGCPFSHSLQAK---RPACKFFYSLQGCRNGDSCIFSHDL 785 (1017)
Q Consensus 731 ~~~~~~C~~f~~G~C~~G~~C~f~H~~~~~---~~~C~~f~~~g~C~~G~~C~f~H~~ 785 (1017)
....++|++|..|.|+.|..|.|+|..+.. .++|++|...|.|..|..|.|.|..
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccC
Confidence 457788999999999999999999997533 5789999999999999999999988
No 171
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.68 E-value=0.00044 Score=78.90 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=95.1
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhc----CCC--cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCc
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAE----NME--PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~----~~~--~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~ 115 (1017)
++++.++||||.||||.++++.... +.. .||-+-.-|+.|...-+..++.+++++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 7899999999999998887765432 222 577888899999998888899887654
Q ss_pred EEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCC-ceEEEEeeccChHHHHHHHhhc
Q 001758 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND-LRVVLMSATADITKYRDYFRDL 191 (1017)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~-lklIlmSATld~~~~~~~f~~~ 191 (1017)
.++-+|.=|...+.. +.++++|.||=+- |+........-++.+.....+ --.+++|||...+.+.+.+...
T Consensus 264 ~vv~~~~el~~ai~~----l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 EVVYSPKELAEAIEA----LRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred EEecCHHHHHHHHHH----hhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 345567667666652 4488999999999 777766677777777765544 4568899999878777777653
No 172
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.56 E-value=0.00037 Score=77.98 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=27.2
Q ss_pred chHHHHHHHH----HHHcCCcEEEEcCCCCcHhHHHHHH
Q 001758 28 VMSLREKIVE----KVLENRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 28 i~~~Q~eil~----ai~~~~~vII~apTGSGKTtqip~~ 62 (1017)
.++.|.++++ .+.+++.+++.+|||+|||..+...
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~ 47 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCL 47 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHH
Confidence 3889999544 4567899999999999999544433
No 173
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.56 E-value=0.00037 Score=77.98 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=27.2
Q ss_pred chHHHHHHHH----HHHcCCcEEEEcCCCCcHhHHHHHH
Q 001758 28 VMSLREKIVE----KVLENRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 28 i~~~Q~eil~----ai~~~~~vII~apTGSGKTtqip~~ 62 (1017)
.++.|.++++ .+.+++.+++.+|||+|||..+...
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~ 47 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCL 47 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHH
Confidence 3889999544 4567899999999999999544433
No 174
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=97.55 E-value=3.4e-05 Score=78.59 Aligned_cols=60 Identities=35% Similarity=0.803 Sum_probs=45.3
Q ss_pred CCCCCCCcccccccccccccccCCCCCCCCCCCCCCC-CcccccccccccCCCCCCCCCCCCC
Q 001758 724 AVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAK-RPACKFFYSLQGCRNGDSCIFSHDL 785 (1017)
Q Consensus 724 ~~~~~~~~~~~~~C~~f~~G~C~~G~~C~f~H~~~~~-~~~C~~f~~~g~C~~G~~C~f~H~~ 785 (1017)
...+...|.+..+|.-|++|+|.+.+.|..+|..+++ -+.|+|| ..|.|.+.+ |+|.|--
T Consensus 223 acrfvheptrkticpkflngrcnkaedcnlsheldprripacryf-llgkcnnpn-cryvhih 283 (377)
T KOG1492|consen 223 ACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYF-LLGKCNNPN-CRYVHIH 283 (377)
T ss_pred eeeeeccccccccChHHhcCccCchhcCCcccccCccccchhhhh-hhccCCCCC-ceEEEEe
Confidence 3556666777777888888888888888888887554 4558888 778887765 8888855
No 175
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.55 E-value=4.5e-05 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.970 Sum_probs=16.7
Q ss_pred cccccccccccccCCCCCCCCCCC
Q 001758 733 EAPLCVYFINGSCNRGTGCPFSHS 756 (1017)
Q Consensus 733 ~~~~C~~f~~G~C~~G~~C~f~H~ 756 (1017)
+..+|++|.+|.|.+|++|+|+|+
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 344677776677777777777775
No 176
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.54 E-value=0.00036 Score=85.30 Aligned_cols=136 Identities=20% Similarity=0.252 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHH---hcC---CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 29 ~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~ll---e~~---~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
.+.|.+++.....++.++|.|++|+||||.+..++. +.. ...|+++.|+.-||..+.+.+..... .++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~---- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL---- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc----
Confidence 468999999999999999999999999988766553 212 23688889988888877776654221 1110
Q ss_pred eeccccccCCCCcEEEECHHHHHHHH------HhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 103 HIGHSKHLSERSKIVFKTAGVLLDEM------RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l------~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.+...........|--.|+... ....-....+++|||||+- +++...+..+++. ..++.|+|++.
T Consensus 229 ----~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlvG 299 (615)
T PRK10875 229 ----TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFLG 299 (615)
T ss_pred ----chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEec
Confidence 0000000001122333333211 0111122367999999998 5666655555553 35678998886
Q ss_pred ec
Q 001758 177 AT 178 (1017)
Q Consensus 177 AT 178 (1017)
=.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 44
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.52 E-value=0.00018 Score=75.79 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=35.4
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHH----HHhcCCCcEEEeccH
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF----LLAENMEPILCTQPR 77 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~----lle~~~~~IivtqPr 77 (1017)
|.+..|..+++++.+++.+++.||.|||||+..... +.+....+|+++-|.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~ 58 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPP 58 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 778999999999999999999999999999554443 334444688888773
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.51 E-value=0.00035 Score=75.75 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHH----hcCCCcEEEeccH
Q 001758 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPR 77 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~ll----e~~~~~IivtqPr 77 (1017)
-|....|...+.++.++..+++.||+|||||+....+.+ +....+|+++-|.
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 688999999999999999999999999999977666544 3335678888774
No 179
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.51 E-value=0.00048 Score=84.02 Aligned_cols=135 Identities=22% Similarity=0.282 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHH---hcC----CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 30 ~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~ll---e~~----~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
..|.+++.....++.++|+|+.|+||||.+..++. +.. ..+|+++.|+--||..+.+.+..... .++..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 67888999999999999999999999987766542 222 13699999998888777776654321 11100
Q ss_pred eeccccccCCCCcEEEECHHHHHHHHH------hcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 103 HIGHSKHLSERSKIVFKTAGVLLDEMR------DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~------~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
........+...|-..|+.... ...-....+++||||||= +++...+..+++. .++..|+|++.
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEEEC
Confidence 0000011122334333432211 111122378999999997 5666655555553 35678888875
Q ss_pred ec
Q 001758 177 AT 178 (1017)
Q Consensus 177 AT 178 (1017)
=.
T Consensus 294 D~ 295 (586)
T TIGR01447 294 DK 295 (586)
T ss_pred Ch
Confidence 44
No 180
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00048 Score=79.07 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=75.6
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHh----cCCCcE--EEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCC
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLA----ENMEPI--LCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle----~~~~~I--ivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t 114 (1017)
++.+++++||||+||||.+..+... .+..+| +.+-+-|+.+....+.+++.++.++
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~------------------ 197 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV------------------ 197 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce------------------
Confidence 4679999999999999988877643 233333 3333446666666666666555322
Q ss_pred cEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc-CCCceEEEEeeccChHHHHH
Q 001758 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADITKYRD 186 (1017)
Q Consensus 115 ~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~-~~~lklIlmSATld~~~~~~ 186 (1017)
..+.+++-+...+.. +.++++|+||++= |....+.+...++.+... .+.-.++++|||...+.+.+
T Consensus 198 -~~~~~~~~l~~~l~~----l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 198 -HAVKDGGDLQLALAE----LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred -EecCCcccHHHHHHH----hcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 112233333333331 2378999999998 555555666666665432 34557899999986655443
No 181
>PF13245 AAA_19: Part of AAA domain
Probab=97.47 E-value=0.00024 Score=62.90 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHcCCcEEEEcCCCCcHhHHHHHHHHhcC------CCcEEEeccHHHHHHHHHHHH
Q 001758 38 KVLENRVTLIVGETGCGKSSQVPQFLLAEN------MEPILCTQPRRFAVVAVAKMV 88 (1017)
Q Consensus 38 ai~~~~~vII~apTGSGKTtqip~~lle~~------~~~IivtqPrrlaa~s~a~rv 88 (1017)
++..++.++|.||.|||||+.+...+.+.. .++|+++.|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 555577888899999999976666554332 458999999999999998887
No 182
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.44 E-value=0.0007 Score=84.87 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=77.7
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHH--HhcCC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~l--le~~~--~~IivtqPrrlaa~s~a~rva~e~~~~lg~~V 100 (1017)
...+.+-|.+++..+..++.++|.|+.|+||||.+-.++ ++... ..|+++.|+--||.. +++..|...
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~----L~e~~g~~a---- 392 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKR----LGEVTGLTA---- 392 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHH----HHHhcCCcc----
Confidence 467899999999999999999999999999998765443 22222 468888887776654 333332110
Q ss_pred eEeeccccccCCCCcEEEECHHHHHHHHHh-----cCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRD-----RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 101 Gy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~-----~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
.|-..++..... ..-.....++||||||+ +++...+..+++. ..++.|+|++
T Consensus 393 ------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~rlilv 449 (720)
T TIGR01448 393 ------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHARLLLV 449 (720)
T ss_pred ------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCEEEEE
Confidence 111112111000 00012368999999999 5666655555553 3467788887
Q ss_pred eec
Q 001758 176 SAT 178 (1017)
Q Consensus 176 SAT 178 (1017)
.=+
T Consensus 450 GD~ 452 (720)
T TIGR01448 450 GDT 452 (720)
T ss_pred Ccc
Confidence 654
No 183
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.41 E-value=5.5e-05 Score=82.37 Aligned_cols=55 Identities=24% Similarity=0.501 Sum_probs=45.3
Q ss_pred cccccccccccccccCCCCC-CCCCCCCCC------CCcccccccccccCCCCCCCCCCCCCCC
Q 001758 731 PGEAPLCVYFINGSCNRGTG-CPFSHSLQA------KRPACKFFYSLQGCRNGDSCIFSHDLGQ 787 (1017)
Q Consensus 731 ~~~~~~C~~f~~G~C~~G~~-C~f~H~~~~------~~~~C~~f~~~g~C~~G~~C~f~H~~~~ 787 (1017)
.-.-++||-|++|.|++||. |+|.|+... +-.-|--| ++|.|.+-+ |+|.|.+..
T Consensus 34 wl~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds-~kgrCsR~n-CkylHpp~h 95 (331)
T KOG2494|consen 34 WLTLEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDS-QKGRCSREN-CKYLHPPQH 95 (331)
T ss_pred hhHHHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEecc-ccCccCccc-ceecCCChh
Confidence 34678999999999999999 999998521 12349988 999999887 999998743
No 184
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.38 E-value=0.036 Score=63.70 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=73.9
Q ss_pred CEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc---EEEEEcCcccccccCCCeeEEEeCCc
Q 001758 278 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDSCR 354 (1017)
Q Consensus 278 ~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVIVATniaetGIdIP~V~~VId~G~ 354 (1017)
+.|||..=......+.-.|. ..++..+-|-|+|++..|...++.|++.- -.+++--..+..+++-....|..
T Consensus 640 KsIVFSQFTSmLDLi~~rL~--kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm--- 714 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLG--KAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM--- 714 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhh--ccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe---
Confidence 44555444333444444444 35688999999999999999999998764 44566666677777777777775
Q ss_pred cceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhh
Q 001758 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1017)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~ 403 (1017)
.||..+... +| ++.-|+-|.|.-+|=++.|++-+...
T Consensus 715 -----mDPWWNpaV---e~----Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 715 -----MDPWWNPAV---EW----QAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred -----ecccccHHH---Hh----hhhhhHHhhcCccceeEEEeehhccH
Confidence 566654322 22 34567777788889999999876543
No 185
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0015 Score=74.79 Aligned_cols=125 Identities=13% Similarity=0.201 Sum_probs=72.7
Q ss_pred CcEEEEcCCCCcHhHHHHHHHH---hcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFLL---AENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ll---e~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
+++.++||||+||||.+..+.. ..+.+ .++-+-|-|+++...-+..++..+.++ +..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~v~ 302 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IAV 302 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------Eec
Confidence 6889999999999988777653 22322 244445667666554444444333221 112
Q ss_pred ECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-cCCCceEEEEeeccChHHHHHHH
Q 001758 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYF 188 (1017)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-~~~~lklIlmSATld~~~~~~~f 188 (1017)
.++.-+.+.+..-. ...++++||||-+= |+....-.+.-++.++. ..++-.++++|||.......+..
T Consensus 303 ~d~~~L~~aL~~lk-~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 303 RDEAAMTRALTYFK-EEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred CCHHHHHHHHHHHH-hccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 35666665554211 01168999999998 55444444444444443 45666678899997554444333
No 186
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=97.35 E-value=9.7e-05 Score=75.32 Aligned_cols=56 Identities=32% Similarity=0.796 Sum_probs=48.3
Q ss_pred cccccccc-ccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCC
Q 001758 734 APLCVYFI-NGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLP 791 (1017)
Q Consensus 734 ~~~C~~f~-~G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~~ 791 (1017)
...||||. +|-|-+|..|+|.|.+ .+..+|.-| ..|.|.+...|-++|++++.+-+
T Consensus 206 avycryynangicgkgaacrfvhep-trkticpkf-lngrcnkaedcnlsheldprrip 262 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEP-TRKTICPKF-LNGRCNKAEDCNLSHELDPRRIP 262 (377)
T ss_pred eeEEEEecCCCcccCCceeeeeccc-cccccChHH-hcCccCchhcCCcccccCccccc
Confidence 45699999 6999999999999985 556679999 99999999999999999765443
No 187
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.34 E-value=0.0017 Score=81.70 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=77.9
Q ss_pred CCCchHHHHHHHHHHHc-CCcEEEEcCCCCcHhHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeee
Q 001758 25 SLPVMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~-~~~vII~apTGSGKTtqip~~l--le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
...+.+-|.+++..+.. ++.++|.|+.|+||||.+-..+ ++.....|+.+.|+-.+|..+. +..|..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g~~------ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----AESGIE------ 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----hccCCc------
Confidence 36788999999999886 5899999999999998766543 3333346778888777665543 222211
Q ss_pred EeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 102 y~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
-.|-..++..+......+...++|||||+- +++.+.+..+++... ....|+|++.
T Consensus 420 ----------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 420 ----------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred ----------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 012222222122222223488999999998 566666666665443 3456888776
No 188
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.32 E-value=0.0026 Score=61.94 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=29.0
Q ss_pred HHHHHHHHHc--CCcEEEEcCCCCcHhHHHHHHHHhcC--CCcEEEecc
Q 001758 32 REKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQP 76 (1017)
Q Consensus 32 Q~eil~ai~~--~~~vII~apTGSGKTtqip~~lle~~--~~~IivtqP 76 (1017)
..++...+.. ++.++|.||+|+|||+.+-.++.... ...++.+..
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 3445555555 68999999999999986665554431 234444444
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.30 E-value=0.00078 Score=77.65 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=51.7
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~----~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
++++|.|..|||||.++..++.+. ....++++.+...+...+.+.++... ........+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------------~~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY-----------------NPKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc-----------------ccchhhhhh
Confidence 578999999999998777666554 22344444444444555555554432 001122233
Q ss_pred ECHHHHHHHHHhcCCCccCceEEEEecccccccc
Q 001758 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE 152 (1017)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~ 152 (1017)
..+..+...+.........+++||||||| |...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 34444433332111123489999999999 4443
No 190
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.28 E-value=7.4e-05 Score=76.97 Aligned_cols=55 Identities=33% Similarity=0.826 Sum_probs=43.4
Q ss_pred cccccccccccccccCCCCCCCCCCCCCC-----------------------------CCccccccccc---c------c
Q 001758 731 PGEAPLCVYFINGSCNRGTGCPFSHSLQA-----------------------------KRPACKFFYSL---Q------G 772 (1017)
Q Consensus 731 ~~~~~~C~~f~~G~C~~G~~C~f~H~~~~-----------------------------~~~~C~~f~~~---g------~ 772 (1017)
..+..+|-.|..|.|.+|+.|.|+|+..- ...+|+||... | .
T Consensus 82 dpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~ 161 (299)
T COG5252 82 DPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWT 161 (299)
T ss_pred CchhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceee
Confidence 44778899999999999999999999500 02369999432 2 4
Q ss_pred CCCC-CCCCCCCCC
Q 001758 773 CRNG-DSCIFSHDL 785 (1017)
Q Consensus 773 C~~G-~~C~f~H~~ 785 (1017)
|.|| ++|.|.|.+
T Consensus 162 CPng~~~C~y~H~L 175 (299)
T COG5252 162 CPNGNMRCSYIHKL 175 (299)
T ss_pred CCCCCceeeeeecc
Confidence 9997 689999998
No 191
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.27 E-value=0.0034 Score=73.93 Aligned_cols=125 Identities=20% Similarity=0.260 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhc-----CCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCc
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAE-----NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~-----~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~ 115 (1017)
+++++++||||+||||.+..+.... +.+ .++-+-|-|.++.......+..++.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 5689999999999998877664322 222 234455667766665555555444321
Q ss_pred EEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-c-CCCceEEEEeeccChHHHHHHHhh
Q 001758 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-K-KNDLRVVLMSATADITKYRDYFRD 190 (1017)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-~-~~~lklIlmSATld~~~~~~~f~~ 190 (1017)
....++.-+...+.. +.++++||||.+- |.....-....++.++. . .+.-..+++|||.....+.+....
T Consensus 282 ~~~~~~~~l~~~l~~----~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 282 EVVYDPKELAKALEQ----LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred EccCCHHhHHHHHHH----hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 111234444444442 2278999999997 44333333344455544 2 344568889999876666655443
No 192
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0038 Score=77.14 Aligned_cols=111 Identities=23% Similarity=0.232 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCc
Q 001758 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1017)
Q Consensus 258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATni 336 (1017)
...+.+-+...+.. +.+|||-..+.+..+.+.+.|.+.+ +.-..|.+.-...+.+ +-+..+.. -|-||||+
T Consensus 415 ~~Aiv~~I~~~~~~----gqPvLvgT~sie~SE~ls~~L~~~~--i~h~VLNAk~h~~EA~--Iia~AG~~gaVTiATNM 486 (822)
T COG0653 415 FKAIVEDIKERHEK----GQPVLVGTVSIEKSELLSKLLRKAG--IPHNVLNAKNHAREAE--IIAQAGQPGAVTIATNM 486 (822)
T ss_pred HHHHHHHHHHHHhc----CCCEEEcCcceecchhHHHHHHhcC--CCceeeccccHHHHHH--HHhhcCCCCcccccccc
Confidence 33344444444443 5799999999999999999998543 3333444443333332 33333444 89999999
Q ss_pred ccccccCC---Cee--------EEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC-CCCcE
Q 001758 337 AESSVTIP---KVA--------YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQV 394 (1017)
Q Consensus 337 aetGIdIP---~V~--------~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c 394 (1017)
|++|-||- +.. +||-+.+....+.| .|-.||+||. -||..
T Consensus 487 AGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRID------------------nQLRGRsGRQGDpG~S 538 (822)
T COG0653 487 AGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRID------------------NQLRGRAGRQGDPGSS 538 (822)
T ss_pred ccCCcccccCCCHHHHHHhCCcEEEecccchhhHHH------------------HHhhcccccCCCcchh
Confidence 99999984 221 34433332222221 6999999999 47764
No 193
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.20 E-value=0.0019 Score=79.60 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=82.4
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccC-C---cEEEEEcCcccccccCCCeeEEEe
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS-H---RKVILATNIAESSVTIPKVAYVID 351 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~-g---rkVIVATniaetGIdIP~V~~VId 351 (1017)
++.||.|+.-..-..-+..+|. ..++...-+-|....++|-..++.|.. + ...|++|-....|+++-..+-||-
T Consensus 726 gHRVLlF~qMTrlmdimEdyL~--~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii 803 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDILEDYLQ--IREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII 803 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHHHh--hhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE
Confidence 6799999987766666666666 345777888899999999999998842 2 288999999999999998888886
Q ss_pred CCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC---CCCcEEEEechhhh
Q 001758 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFF 403 (1017)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~---~~G~c~rLys~~~~ 403 (1017)
||...+.... .|+.-||-|. ..-.++||.+-..+
T Consensus 804 --------fdsdwnp~~d----------~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 804 --------FDSDWNPHQD----------LQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred --------ecCCCCchhH----------HHHHHHHHHhhchhheeeeeeehhhHH
Confidence 8877665544 6666666665 56778888886544
No 194
>PRK06526 transposase; Provisional
Probab=97.19 E-value=0.00094 Score=73.22 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=21.2
Q ss_pred HHHHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 37 EKVLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 37 ~ai~~~~~vII~apTGSGKTtqip~~l 63 (1017)
+.+..+++++++||+|+|||++...+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHH
Confidence 445678899999999999997655443
No 195
>PRK04296 thymidine kinase; Provisional
Probab=97.16 E-value=0.0024 Score=67.03 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEecc
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQP 76 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~--~~~~IivtqP 76 (1017)
+..+++.||+|+||||.+..++... ...++++.-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4578999999999999988887654 2335555544
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.14 E-value=0.0014 Score=63.23 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhcCCC--cEEEeccHH
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAENME--PILCTQPRR 78 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~~~~--~IivtqPrr 78 (1017)
++.++|.||+||||||.+..++...... .++.+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 5789999999999999888877666554 355555443
No 197
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.14 E-value=0.0003 Score=49.02 Aligned_cols=25 Identities=48% Similarity=0.933 Sum_probs=22.4
Q ss_pred CCcccccccccccCCCCCCCCCCCCC
Q 001758 760 KRPACKFFYSLQGCRNGDSCIFSHDL 785 (1017)
Q Consensus 760 ~~~~C~~f~~~g~C~~G~~C~f~H~~ 785 (1017)
+..+|++| ..|.|.+|++|+|+|+.
T Consensus 3 k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 45689999 99999999999999973
No 198
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.11 E-value=0.0036 Score=80.11 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=79.0
Q ss_pred CCCchHHHHHHHHHHHc-CCcEEEEcCCCCcHhHHHHHH--HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeee
Q 001758 25 SLPVMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQF--LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~-~~~vII~apTGSGKTtqip~~--lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
.+.+.+-|.+++..+.. ++.++|.|..|+||||.+-.. +++.....|+.+.|+-.+|..+. +..|..
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~----e~tGi~------ 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLE----GGSGIA------ 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHh----hccCcc------
Confidence 46789999999999887 468899999999999875433 23333346777888777665443 211110
Q ss_pred EeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 102 y~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
-.|-..|+..+..+...+...++|||||+- ++++..+..+++... ....|||++.=+
T Consensus 414 ----------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~ 470 (988)
T PRK13889 414 ----------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDP 470 (988)
T ss_pred ----------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCH
Confidence 012233332221222224478999999998 667766666665443 356788887655
No 199
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.10 E-value=0.007 Score=75.90 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhcc----CCc-EEE
Q 001758 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK----SHR-KVI 331 (1017)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~----~gr-kVI 331 (1017)
..+.+.+.+..+.. . .|.+|||.++.+..+.++..|.... +..+ ..++.. .+..+++.|+ .+. .|+
T Consensus 519 ~~~~~~~~i~~l~~-~---~gg~LVlFtSy~~l~~v~~~l~~~~-~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL 589 (697)
T PRK11747 519 HTAEMAEFLPELLE-K---HKGSLVLFASRRQMQKVADLLPRDL-RLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVL 589 (697)
T ss_pred HHHHHHHHHHHHHh-c---CCCEEEEeCcHHHHHHHHHHHHHhc-CCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEE
Confidence 34445555555554 2 3468999999999999999886421 2333 335543 2444554454 444 899
Q ss_pred EEcCcccccccCCC--eeEEEeCCccceeeecCCCCc--------------cccce--eecCHhhHHHhcCCCCCCC--C
Q 001758 332 LATNIAESSVTIPK--VAYVIDSCRSLQVFWDVNRKI--------------DSAEL--VWVSQSQAEQRRGRTGRTC--D 391 (1017)
Q Consensus 332 VATniaetGIdIP~--V~~VId~G~~k~~~yd~~~~~--------------~~l~~--~~iSkasa~QR~GRAGR~~--~ 391 (1017)
++|....+|||+|+ .+.||-.|++ |.++... +.+.. .|-.--.+.|-+||.=|.. .
T Consensus 590 ~g~~sf~EGVD~pGd~l~~vII~kLP----F~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~ 665 (697)
T PRK11747 590 FGLQSFAEGLDLPGDYLTQVIITKIP----FAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDR 665 (697)
T ss_pred EEeccccccccCCCCceEEEEEEcCC----CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCce
Confidence 99999999999996 7888877765 2222211 11100 0112234689999998883 5
Q ss_pred CcEEEE
Q 001758 392 GQVYRL 397 (1017)
Q Consensus 392 G~c~rL 397 (1017)
|.++.|
T Consensus 666 G~i~il 671 (697)
T PRK11747 666 GRVTIL 671 (697)
T ss_pred EEEEEE
Confidence 765544
No 200
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.08 E-value=0.0084 Score=66.31 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHH----------cCCcEEEEcCCCCcHhHHHHHHHHhc---CC-CcEEEeccHHHHHHHHHHHHHhhcC
Q 001758 28 VMSLREKIVEKVL----------ENRVTLIVGETGCGKSSQVPQFLLAE---NM-EPILCTQPRRFAVVAVAKMVAKGRN 93 (1017)
Q Consensus 28 i~~~Q~eil~ai~----------~~~~vII~apTGSGKTtqip~~lle~---~~-~~IivtqPrrlaa~s~a~rva~e~~ 93 (1017)
+...|-|.+-..- ...-.+|--.||.||--++.-+|+++ +. +.|.++....+... ..+.+.+. |
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D-a~RDl~DI-G 115 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD-AERDLRDI-G 115 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH-HHHHHHHh-C
Confidence 4566666554332 23456777789999998888888876 33 36777777655432 22333321 1
Q ss_pred CccCCeeeE-eeccccccCCCCcEEEECHHHHHHHHHhc---CCC---------ccCceEEEEeccccccccccH-----
Q 001758 94 CELGGEVGY-HIGHSKHLSERSKIVFKTAGVLLDEMRDR---GLN---------ALKYKVIILDEVHERSVESDL----- 155 (1017)
Q Consensus 94 ~~lg~~VGy-~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~---~l~---------l~~~~~IIIDEaHER~~~~d~----- 155 (1017)
..--..... .....+...-+..|+|+|+-.|...-... ... -.-=.+||+||||. .-+..-
T Consensus 116 ~~~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~-akn~~~~~~~~ 194 (303)
T PF13872_consen 116 ADNIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK-AKNLSSGSKKP 194 (303)
T ss_pred CCcccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh-cCCCCccCccc
Confidence 110000000 00111112234569999998887664211 000 01236899999995 322211
Q ss_pred --HHHHHHHHHhcCCCceEEEEeecc
Q 001758 156 --VLVCVKQLLLKKNDLRVVLMSATA 179 (1017)
Q Consensus 156 --ll~~lk~ll~~~~~lklIlmSATl 179 (1017)
.-.....+..+-|+.|++-+|||-
T Consensus 195 sk~g~avl~LQ~~LP~ARvvY~SATg 220 (303)
T PF13872_consen 195 SKTGIAVLELQNRLPNARVVYASATG 220 (303)
T ss_pred cHHHHHHHHHHHhCCCCcEEEecccc
Confidence 112233445556889999999994
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=97.04 E-value=0.0056 Score=69.66 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCcHhHHHHHHH---HhcCCCcEEE-eccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFL---LAENMEPILC-TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l---le~~~~~Iiv-tqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
.+++++|++|+||||.+..+. ...+...+++ +-+.|.++....+..+..+|.++.. +. ...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~~-------~g~------ 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--HK-------YGA------ 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--cc-------CCC------
Confidence 579999999999998766554 3333332233 2345666665556666666543311 00 000
Q ss_pred ECH-HHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHH-hcCCCceEEEEeeccChHHH--HHHHh
Q 001758 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATADITKY--RDYFR 189 (1017)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll-~~~~~lklIlmSATld~~~~--~~~f~ 189 (1017)
.| .++.+.+.... ..++++||||.++ |.....-++.-++.+. ...|+..+++++||...+.. .+.|.
T Consensus 206 -dp~~v~~~ai~~~~--~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 206 -DPAAVAYDAIEHAK--ARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred -CHHHHHHHHHHHHH--hCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 11 12222222111 1268999999999 5543333444444443 34688899999999743333 44554
No 202
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.02 E-value=0.0035 Score=79.06 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=72.8
Q ss_pred CcEEEEcCCCCcHhHHHHHHHH----hcCCCcEEEeccHHHHHHHHHHHHH-----hhcCCccC-CeeeEeeccccc---
Q 001758 43 RVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVA-----KGRNCELG-GEVGYHIGHSKH--- 109 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ll----e~~~~~IivtqPrrlaa~s~a~rva-----~e~~~~lg-~~VGy~v~~~~~--- 109 (1017)
.++.+.++||+|||..+...++ ..+..+.+++.|....-..+.+.+. ..+....+ ..+-+.+-....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 5899999999999975554443 3356678888887666554444432 22221222 223332211110
Q ss_pred ------c-------------CCCCcEEEECHHHHHHHHHh---------cCC--Ccc----CceEEEEeccccccccccH
Q 001758 110 ------L-------------SERSKIVFKTAGVLLDEMRD---------RGL--NAL----KYKVIILDEVHERSVESDL 155 (1017)
Q Consensus 110 ------~-------------~~~t~Iiv~T~g~Ll~~l~~---------~~l--~l~----~~~~IIIDEaHER~~~~d~ 155 (1017)
. ...-.|.++|.++|...... ++. ... .=-+|||||.|.- +++
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~--~~~- 216 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF--PRD- 216 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC--Ccc-
Confidence 1 11458999999999753220 000 000 2247899999942 221
Q ss_pred HHHHHHHHHhcCCCceEEEEeeccCh
Q 001758 156 VLVCVKQLLLKKNDLRVVLMSATADI 181 (1017)
Q Consensus 156 ll~~lk~ll~~~~~lklIlmSATld~ 181 (1017)
..-.+.+...+|. -++..|||.+.
T Consensus 217 -~k~~~~i~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAIEALKPQ-MIIRFGATFPD 240 (986)
T ss_pred -hHHHHHHHhcCcc-cEEEEeeecCC
Confidence 1122334444543 46669999854
No 203
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.01 E-value=0.0089 Score=74.80 Aligned_cols=135 Identities=17% Similarity=0.091 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC-c-EEEEE
Q 001758 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH-R-KVILA 333 (1017)
Q Consensus 256 ~~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g-r-kVIVA 333 (1017)
.....+...+..+.... +|.+|||+|+.+..+.+.+.+...... ..+..+|..+.+ .+++.|+.. . -++|+
T Consensus 462 ~~~~~~~~~i~~~~~~~---~~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~ 534 (654)
T COG1199 462 ELLAKLAAYLREILKAS---PGGVLVLFPSYEYLKRVAERLKDERST-LPVLTQGEDERE---ELLEKFKASGEGLILVG 534 (654)
T ss_pred HHHHHHHHHHHHHHhhc---CCCEEEEeccHHHHHHHHHHHhhcCcc-ceeeecCCCcHH---HHHHHHHHhcCCeEEEe
Confidence 33444445555555444 468999999999999999998754322 234556655554 445566443 3 79999
Q ss_pred cCcccccccCCCe--eEEEeCCccceeeecCC----------CCcc--ccceeecCHhhHHHhcCCCCCCC--CCcEEEE
Q 001758 334 TNIAESSVTIPKV--AYVIDSCRSLQVFWDVN----------RKID--SAELVWVSQSQAEQRRGRTGRTC--DGQVYRL 397 (1017)
Q Consensus 334 TniaetGIdIP~V--~~VId~G~~k~~~yd~~----------~~~~--~l~~~~iSkasa~QR~GRAGR~~--~G~c~rL 397 (1017)
|..+.+|||+|+= +.||-.|++-...-|+. .+.. .+...+..--...|-+||+=|.. .|.++.|
T Consensus 535 ~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 535 GGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred eccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999999999954 66665565422111111 1101 11122333456789999999983 4666655
No 204
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0056 Score=71.05 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhc----CCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcE
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAE----NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~----~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~I 116 (1017)
+.+++++||||+||||++.++.... +.. .++-+-+.|.++....++.++..+.++- .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-----~------------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----P------------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----e-------------
Confidence 4578899999999999988887532 222 3455567788888777777775553220 0
Q ss_pred EEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc----CCCceEEEEeeccChHHHHHHH
Q 001758 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK----KNDLRVVLMSATADITKYRDYF 188 (1017)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~----~~~lklIlmSATld~~~~~~~f 188 (1017)
+.....+...+.. .++++||||=+- |.....-.+.-++.++.. .+.-.++++|||...+...+..
T Consensus 285 -~~~~~~l~~~l~~-----~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 285 -VKDIKKFKETLAR-----DGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred -hHHHHHHHHHHHh-----CCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 0012333333332 278999999876 443333333344444432 2345789999998655444443
No 205
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0051 Score=73.07 Aligned_cols=126 Identities=17% Similarity=0.261 Sum_probs=70.3
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHHHh---cC-CCcEE--EeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCC
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFLLA---EN-MEPIL--CTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSER 113 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~lle---~~-~~~Ii--vtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~ 113 (1017)
..+++++++||||+||||.+..+... .. ..+|. -+-+.|+.+.......+..++.. + .
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~----v--~---------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIA----V--H---------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCce----e--E----------
Confidence 45789999999999999887666532 22 23333 33455665544433333322211 1 0
Q ss_pred CcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccChHHHHHHHh
Q 001758 114 SKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (1017)
Q Consensus 114 t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld~~~~~~~f~ 189 (1017)
...+++.+...+.. +.++++||||.+- ++.....+...++.+......-.+++++++.....+.+.+.
T Consensus 412 ---~a~d~~~L~~aL~~----l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 412 ---EADSAESLLDLLER----LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred ---ecCcHHHHHHHHHH----hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHH
Confidence 01134445554442 2379999999998 43333333333444433344567889999976555554443
No 206
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.91 E-value=0.0015 Score=75.78 Aligned_cols=55 Identities=29% Similarity=0.590 Sum_probs=47.3
Q ss_pred cccccccccccccccCCCCCCCCCCCC--------CCCCcccccccccccCCCCCCCCCCCCCCCCC
Q 001758 731 PGEAPLCVYFINGSCNRGTGCPFSHSL--------QAKRPACKFFYSLQGCRNGDSCIFSHDLGQPV 789 (1017)
Q Consensus 731 ~~~~~~C~~f~~G~C~~G~~C~f~H~~--------~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~ 789 (1017)
.+..++|--|.+|.|.+||+|.|.|.. ..++..||-- |+|.. .-|-|.|......
T Consensus 233 hYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR 295 (528)
T KOG1595|consen 233 HYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLR 295 (528)
T ss_pred cccCccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecChHHhc
Confidence 457788999999999999999999987 5678899965 99999 6699999886653
No 207
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.89 E-value=0.0023 Score=68.32 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHcCCc-EEEEcCCCCcHhHHHHHHHHhc----------CCCcEEEeccHHHHHHHHHHHHHh
Q 001758 28 VMSLREKIVEKVLENRV-TLIVGETGCGKSSQVPQFLLAE----------NMEPILCTQPRRFAVVAVAKMVAK 90 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~-vII~apTGSGKTtqip~~lle~----------~~~~IivtqPrrlaa~s~a~rva~ 90 (1017)
+.+.|.+++..+..... .+|.||.|+|||+.+...+... ...+|+++.|.-.++..+..++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46789999999998887 9999999999997776665543 234899999999999999888877
No 208
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0092 Score=74.06 Aligned_cols=123 Identities=17% Similarity=0.185 Sum_probs=79.8
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHH----hcCCCcEEE--eccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCc
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLL----AENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~ll----e~~~~~Iiv--tqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~ 115 (1017)
++++.++||||+||||.+.++.. ..+..+|.+ +-+-|+.+...-+..++.++.++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-------------------
Confidence 46899999999999988877753 333334433 34567777666666666554322
Q ss_pred EEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-cCCCceEEEEeeccChHHHHHHH
Q 001758 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYF 188 (1017)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-~~~~lklIlmSATld~~~~~~~f 188 (1017)
.++.++.-+...+.. +.++++||||=+= |+....-+...++.+.. ..+.-.++++|||...+.+.+..
T Consensus 246 ~~~~~~~~l~~al~~----~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 246 HAVKDAADLRFALAA----LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred cccCCHHHHHHHHHH----hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 112256666555542 2378999999998 66554446666665543 35667899999998766665443
No 209
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0051 Score=70.29 Aligned_cols=129 Identities=18% Similarity=0.189 Sum_probs=77.3
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHH---hcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcE
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLL---AENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~ll---e~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~I 116 (1017)
.+++++++||||+||||.+..+.. ..+.+ .++-+-|-|.+|...-+..++..+.++ .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-------------------~ 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-------------------I 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-------------------E
Confidence 467999999999999988776654 33332 345555767766655555555433211 1
Q ss_pred EEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-cCCCceEEEEeeccChHHHHHHHhh
Q 001758 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYFRD 190 (1017)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-~~~~lklIlmSATld~~~~~~~f~~ 190 (1017)
+..+|+-+.+.+..-. ...++++||||=+= |+...+-++.-++.+.. ..++.-++++|||.......+.+..
T Consensus 266 ~~~dp~dL~~al~~l~-~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~ 338 (407)
T PRK12726 266 VATSPAELEEAVQYMT-YVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPK 338 (407)
T ss_pred ecCCHHHHHHHHHHHH-hcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHh
Confidence 1134666554443211 11368999999997 44443444444444443 3566667889998876666666543
No 210
>PF13173 AAA_14: AAA domain
Probab=96.84 E-value=0.0066 Score=59.27 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=54.7
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHhcC-CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEEE
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle~~-~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv~ 119 (1017)
+++.++|.||.|+||||.+-+++.+.. ...++++.-........ ...+
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~---------------------------~~~~---- 49 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL---------------------------ADPD---- 49 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH---------------------------hhhh----
Confidence 468999999999999999888875543 12222221100000000 0000
Q ss_pred CHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 120 TAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 120 T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
.+..+.+... .+-.+|+|||+|. . .-+...++.+....++.++|+++..
T Consensus 50 ~~~~~~~~~~------~~~~~i~iDEiq~-~---~~~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 50 LLEYFLELIK------PGKKYIFIDEIQY-L---PDWEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred hHHHHHHhhc------cCCcEEEEehhhh-h---ccHHHHHHHHHHhccCceEEEEccc
Confidence 1222222211 1567899999993 2 2355566777766678888887665
No 211
>PRK08181 transposase; Validated
Probab=96.83 E-value=0.01 Score=65.60 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=24.0
Q ss_pred hHHHHHHH----HHHHcCCcEEEEcCCCCcHhHHHHHH
Q 001758 29 MSLREKIV----EKVLENRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 29 ~~~Q~eil----~ai~~~~~vII~apTGSGKTtqip~~ 62 (1017)
...|...+ +.+..++++++.||+|+|||.++..+
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHH
Confidence 34444444 34567899999999999999654443
No 212
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0097 Score=69.56 Aligned_cols=126 Identities=15% Similarity=0.190 Sum_probs=78.4
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHh----cCCC--cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCC
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLA----ENME--PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle----~~~~--~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t 114 (1017)
.++++.++||||+||||.+..+... .+.. .++..-+.|+.+.......++.+|.++- +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~-------------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--S-------------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--c--------------
Confidence 3578999999999999988766432 2222 4566677788887777777776553321 0
Q ss_pred cEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC-CCceEEEEeeccChHHHHHHHhh
Q 001758 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFRD 190 (1017)
Q Consensus 115 ~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~-~~lklIlmSATld~~~~~~~f~~ 190 (1017)
+-++.-+...+.. +.++++|+||.+= |.-..+.+...++.+.... +.-.++++|||...+.+.+....
T Consensus 254 ---v~~~~dl~~al~~----l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 254 ---IKDIADLQLMLHE----LRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred ---CCCHHHHHHHHHH----hcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 1122222222221 3378999999985 5544444556666654433 34467889999876666665543
No 213
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.79 E-value=0.083 Score=61.94 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=83.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCccc--ccccCCCeeEEEeC
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAE--SSVTIPKVAYVIDS 352 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniae--tGIdIP~V~~VId~ 352 (1017)
.+.+|||+|+.-+--.+...|. ..++....+|--.+..+-...-..|..|+ +|++-|-=+- .=..|-||+.||-
T Consensus 300 ~~~~LIfIPSYfDfVRlRN~lk--~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF- 376 (442)
T PF06862_consen 300 MSGTLIFIPSYFDFVRLRNYLK--KENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF- 376 (442)
T ss_pred CCcEEEEecchhhhHHHHHHHH--hcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE-
Confidence 5799999999999999999998 44577778887777777666667787777 9999995332 3456788999997
Q ss_pred CccceeeecCCCCccccceeecCHhhHHHhcCCCCC----CCCCcEEEEechhhhcc
Q 001758 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGR----TCDGQVYRLVTKSFFGT 405 (1017)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR----~~~G~c~rLys~~~~~~ 405 (1017)
|.+|....-| ++...+.+.... ...+.|..||++-+...
T Consensus 377 -------Y~~P~~p~fY-------~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 377 -------YGPPENPQFY-------SELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred -------ECCCCChhHH-------HHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 8888877666 344555544332 25678999999855443
No 214
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.78 E-value=0.0053 Score=71.12 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=45.0
Q ss_pred chHHHHHHHHHH------HcCCcEEEEcCCCCcHhHHHHHHHH--hcCCCcEEEeccHHHHHHHH
Q 001758 28 VMSLREKIVEKV------LENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAV 84 (1017)
Q Consensus 28 i~~~Q~eil~ai------~~~~~vII~apTGSGKTtqip~~ll--e~~~~~IivtqPrrlaa~s~ 84 (1017)
+.+-|.++++.+ .++.++.|.|+-|+|||+.+-.+.- ......++++.|+.+||..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 456788888888 6788999999999999987755543 22334799999999998765
No 215
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.71 E-value=0.012 Score=75.89 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=79.7
Q ss_pred CCCchHHHHHHHHHHH-cCCcEEEEcCCCCcHhHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeee
Q 001758 25 SLPVMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~-~~~~vII~apTGSGKTtqip~~l--le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
...+++-|.+++..+. .++.++|.|+.|+||||.+-... ++.....|+.+.|+--+|..+. +..|..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~----e~~Gi~------ 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLE----KEAGIQ------ 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHH----HhhCCC------
Confidence 4678999999999885 57899999999999998775543 3333346777788766665543 332221
Q ss_pred EeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 102 y~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
-.|-..++.....+...+..-++|||||+. ++++..+..+++.+. ....|+|++.=+
T Consensus 449 ----------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 449 ----------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred ----------------eeeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 012222211111111123367899999998 677777777776654 345788887655
No 216
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.65 E-value=0.012 Score=73.34 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=94.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc---EEEEEcCcccccccCCCeeEEEeC
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVIVATniaetGIdIP~V~~VId~ 352 (1017)
+.++|||..=.....-+-..|. ..++..+-|.|....++|+..++.|...+ ..|++|-....|||+-+.+.||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLn--yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF- 1352 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLN--YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF- 1352 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHh--hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE-
Confidence 5699999887777777777776 34577788899999999999999997665 66899999999999999999997
Q ss_pred CccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhc
Q 001758 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1017)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1017)
||...+.. --|++.-|+-|.|+++.=..|||+++...+
T Consensus 1353 -------YDsDwNPt-------MDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1353 -------YDSDWNPT-------MDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred -------ecCCCCch-------hhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 98876533 347888899999999999999999986554
No 217
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.63 E-value=0.017 Score=65.78 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=30.5
Q ss_pred CceEEEEeccccccccccHHHHHHHHHHhcCC-CceEEEEeeccChHHHHHHHh
Q 001758 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMSATADITKYRDYFR 189 (1017)
Q Consensus 137 ~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~-~lklIlmSATld~~~~~~~f~ 189 (1017)
++++||||+.+ ....+++....+-.++..+- .-+-+++|..++++.+.+.++
T Consensus 246 ~~DLLIIDDlG-~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 246 NCDLLIIDDLG-TEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred cCCEEEEeccC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 78999999998 33344554444444444332 123356666666666666553
No 218
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.56 E-value=0.0021 Score=69.22 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=49.3
Q ss_pred CCcccccccccccc-cccCCCCCCCCCCCCCC------------CCcccccccccccCCCCCCCCCCCCC
Q 001758 729 ETPGEAPLCVYFIN-GSCNRGTGCPFSHSLQA------------KRPACKFFYSLQGCRNGDSCIFSHDL 785 (1017)
Q Consensus 729 ~~~~~~~~C~~f~~-G~C~~G~~C~f~H~~~~------------~~~~C~~f~~~g~C~~G~~C~f~H~~ 785 (1017)
....++++|.-|.. |.|.+|..|.|.|.... ...+|+-+...|.|..|.+|.++|+.
T Consensus 269 ~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dk 338 (351)
T COG5063 269 KQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDK 338 (351)
T ss_pred ccccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhcccc
Confidence 44668999999995 99999999999998621 24579999999999999999999987
No 219
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.54 E-value=0.0017 Score=74.13 Aligned_cols=51 Identities=37% Similarity=0.786 Sum_probs=43.2
Q ss_pred ccccccccccc---ccCCCCCCCCCCCCC----CC----CcccccccccccCCCCCCCCCCC
Q 001758 733 EAPLCVYFING---SCNRGTGCPFSHSLQ----AK----RPACKFFYSLQGCRNGDSCIFSH 783 (1017)
Q Consensus 733 ~~~~C~~f~~G---~C~~G~~C~f~H~~~----~~----~~~C~~f~~~g~C~~G~~C~f~H 783 (1017)
+..+|.-...| .|.+|++|+|.||.. .+ .+-|.+|...|.|.+|-+|||.-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhh
Confidence 66789998876 699999999999982 12 35699999999999999999953
No 220
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.53 E-value=0.0028 Score=65.03 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=68.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCC--CcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcC--cccccccCCC--eeE
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMKICKSHR-KVILATN--IAESSVTIPK--VAY 348 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~--~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATn--iaetGIdIP~--V~~ 348 (1017)
+|.+|||+|+.+..+.+.+.+..... ++.+. .. ...+...+++.|+.+. -|++++. ...+|||+|+ ++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~--~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF--VQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE--ES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceee--ec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 47999999999999999999875432 23232 22 2345666778888777 9999998 9999999995 778
Q ss_pred EEeCCccceeeecCCCC--cc----------ccceeecCHhhHHHhcCCCCCCCCCcEE
Q 001758 349 VIDSCRSLQVFWDVNRK--ID----------SAELVWVSQSQAEQRRGRTGRTCDGQVY 395 (1017)
Q Consensus 349 VId~G~~k~~~yd~~~~--~~----------~l~~~~iSkasa~QR~GRAGR~~~G~c~ 395 (1017)
||-.|++-...-|+... .+ ..-..+-.--...|-+||+=|...-.+.
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~ 143 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGV 143 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEE
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEE
Confidence 88878764332222100 00 0001112224568999999999654433
No 221
>PRK08727 hypothetical protein; Validated
Probab=96.45 E-value=0.012 Score=63.78 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCcHhHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ 62 (1017)
+.+++.|++|+|||..+-.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46999999999999755443
No 222
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.42 E-value=0.0008 Score=83.08 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=99.6
Q ss_pred CCCchHHHHHHHHHHHc----------------CCcEEEEcCCCCcHhHHHHHHH----HhcCCCcEEEeccHHHHHHHH
Q 001758 25 SLPVMSLREKIVEKVLE----------------NRVTLIVGETGCGKSSQVPQFL----LAENMEPILCTQPRRFAVVAV 84 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~----------------~~~vII~apTGSGKTtqip~~l----le~~~~~IivtqPrrlaa~s~ 84 (1017)
.||+...+...++.+.. +.++++-+|||+|||..+-..+ .+.+..+++++.|-..+....
T Consensus 910 plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker 989 (1230)
T KOG0952|consen 910 PLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKER 989 (1230)
T ss_pred CCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhccc
Confidence 57777777666666653 2467888999999995544333 344556899999998888877
Q ss_pred HHHHHhhcCCccCCeeeEee---ccccccCCCCcEEEECHHHHHHHHHh--cCCCccCceEEEEeccccccccccHHHHH
Q 001758 85 AKMVAKGRNCELGGEVGYHI---GHSKHLSERSKIVFKTAGVLLDEMRD--RGLNALKYKVIILDEVHERSVESDLVLVC 159 (1017)
Q Consensus 85 a~rva~e~~~~lg~~VGy~v---~~~~~~~~~t~Iiv~T~g~Ll~~l~~--~~l~l~~~~~IIIDEaHER~~~~d~ll~~ 159 (1017)
++........+ |..++-.. .-+-..-.+++|+++||+......++ ..-.+.+++.+|+||.|.-+.+-...+.+
T Consensus 990 ~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ 1068 (1230)
T KOG0952|consen 990 SDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEV 1068 (1230)
T ss_pred ccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEE
Confidence 77766644433 33332111 11112235689999999988765442 11123488999999999433221111111
Q ss_pred HHHHH-----hcCCCceEEEEe-eccChHHHHHHHhh
Q 001758 160 VKQLL-----LKKNDLRVVLMS-ATADITKYRDYFRD 190 (1017)
Q Consensus 160 lk~ll-----~~~~~lklIlmS-ATld~~~~~~~f~~ 190 (1017)
+..-. ...+..|++++| |-.++..+++|.+.
T Consensus 1069 ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~ 1105 (1230)
T KOG0952|consen 1069 IVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNI 1105 (1230)
T ss_pred EeeccccCccccCcchhhhhHhhhhhccHHHHHHhCC
Confidence 11101 112345777776 44588889999874
No 223
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.41 E-value=0.011 Score=65.07 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=61.5
Q ss_pred CchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHH--HHHHhcCCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeeEe
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVP--QFLLAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip--~~lle~~~~~-IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~ 103 (1017)
-.+++-.+++-.+.-++.-|+...||=|||..+. .++....... =++|...-+ |..=++.+..... .+|-.||+.
T Consensus 75 g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyL-A~RD~~~~~~~y~-~LGlsv~~~ 152 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYL-AKRDAEEMRPFYE-FLGLSVGII 152 (266)
T ss_dssp S----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHH-HHHHHHHHHHHHH-HTT--EEEE
T ss_pred CCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHH-hhccHHHHHHHHH-HhhhccccC
Confidence 3344444444444333334999999999994443 3333322233 344544444 4433444433222 466677766
Q ss_pred ecccccc----CCCCcEEEECHHHHHHH-HHhc----C--CCccCceEEEEecccc
Q 001758 104 IGHSKHL----SERSKIVFKTAGVLLDE-MRDR----G--LNALKYKVIILDEVHE 148 (1017)
Q Consensus 104 v~~~~~~----~~~t~Iiv~T~g~Ll~~-l~~~----~--l~l~~~~~IIIDEaHE 148 (1017)
....... .-..+|+|+|..-+..- +++. . .....+.++|||||+-
T Consensus 153 ~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 153 TSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp ETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred ccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 4432211 11467999999877543 3321 1 1123789999999994
No 224
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.38 E-value=0.0075 Score=66.05 Aligned_cols=59 Identities=32% Similarity=0.649 Sum_probs=47.9
Q ss_pred cccccccc-cccccCCCCCCCCCCCC-CCCCcccccccc--cccCCCCCCCCCCCCCCCCCCC
Q 001758 733 EAPLCVYF-INGSCNRGTGCPFSHSL-QAKRPACKFFYS--LQGCRNGDSCIFSHDLGQPVLP 791 (1017)
Q Consensus 733 ~~~~C~~f-~~G~C~~G~~C~f~H~~-~~~~~~C~~f~~--~g~C~~G~~C~f~H~~~~~~~~ 791 (1017)
....|+|| ..|.|..|..|.|.|-. ......|.+|.. .+.|.+|..|++.|......+.
T Consensus 133 ~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~~~ 195 (285)
T COG5084 133 QGPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLKRVSYG 195 (285)
T ss_pred cCCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCCCcccccccccccccc
Confidence 56779999 57999999999999974 344567999932 7999999999999998544333
No 225
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.38 E-value=0.0023 Score=65.92 Aligned_cols=113 Identities=27% Similarity=0.323 Sum_probs=56.1
Q ss_pred EEEcCCCCcHhHHHHHHHHhcC---CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeecc-------ccccCCCCc
Q 001758 46 LIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH-------SKHLSERSK 115 (1017)
Q Consensus 46 II~apTGSGKTtqip~~lle~~---~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~-------~~~~~~~t~ 115 (1017)
||+|+-|-|||+.+-..+.... ..+|+||.|+..++..+.+.....+. ..||.... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 6899999999998877654332 24799999999988887776544322 12222110 011123677
Q ss_pred EEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeecc
Q 001758 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1017)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATl 179 (1017)
|.|..|.-+...- ...+++|||||= .+. ..+++.++... ..++||.|+
T Consensus 76 i~f~~Pd~l~~~~-------~~~DlliVDEAA--aIp----~p~L~~ll~~~---~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAEK-------PQADLLIVDEAA--AIP----LPLLKQLLRRF---PRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGG--GS-----HHHHHHHHCCS---SEEEEEEEB
T ss_pred EEEECCHHHHhCc-------CCCCEEEEechh--cCC----HHHHHHHHhhC---CEEEEEeec
Confidence 8899988875421 146899999997 333 44555665444 466778886
No 226
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.28 E-value=0.039 Score=60.98 Aligned_cols=127 Identities=13% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHh---cCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEE
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLA---ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle---~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Ii 117 (1017)
++.+.++|++|+||||.+..+... .+.. .++.+-+.|+.+....+..+...+ +.+ +.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~--------~~~-----------~~ 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG--------FEV-----------IA 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC--------ceE-----------Ee
Confidence 379999999999999876655433 2222 344444666554443333333222 110 01
Q ss_pred EECHHHHHHHHHhcCCCccCceEEEEeccccccc-cccHHHHHHHHHHhcCCCceEEEEeeccChHHHHHHHh
Q 001758 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSV-ESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (1017)
Q Consensus 118 v~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~-~~d~ll~~lk~ll~~~~~lklIlmSATld~~~~~~~f~ 189 (1017)
..++.-+.+.+..-. ...++++||||-+= |.. +.+.+..+.+.+-...++..++++|||...+...+...
T Consensus 136 ~~~~~~l~~~l~~l~-~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~ 206 (270)
T PRK06731 136 VRDEAAMTRALTYFK-EEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 206 (270)
T ss_pred cCCHHHHHHHHHHHH-hcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHH
Confidence 124444544432100 11268999999997 443 33334444433333456667888999976655544443
No 227
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=96.28 E-value=0.0023 Score=71.65 Aligned_cols=69 Identities=25% Similarity=0.484 Sum_probs=52.0
Q ss_pred cccCcCCCCCCCccccccccccc-ccccCCCCCCCCCCCC-CCCCcccccccccccCCCCCCCCCCCCCCCCCC
Q 001758 719 GNQDKAVNGSETPGEAPLCVYFI-NGSCNRGTGCPFSHSL-QAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVL 790 (1017)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~C~~f~-~G~C~~G~~C~f~H~~-~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~ 790 (1017)
..+...|.+ ...+.++ |.||. .|.|.+|..|.|.|.. ..+...|++| ..|.|+.|+.|++.|.......
T Consensus 92 D~C~Flhe~-~~~k~re-c~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~-~~g~c~~g~~c~~~h~~~~~c~ 162 (325)
T KOG1040|consen 92 DQCEFLHEY-DLTKMRE-CKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWY-KEGFCRGGPSCKKRHERKVLCP 162 (325)
T ss_pred CcCcchhhh-hhccccc-ccccccccccccccCCcccCCChhhhhhccchh-hhccCCCcchhhhhhhcccCCC
Confidence 334455544 3344445 77777 6999999999999975 5667789999 9999999999999998865433
No 228
>PF05729 NACHT: NACHT domain
Probab=96.24 E-value=0.019 Score=57.70 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=33.1
Q ss_pred eEEEEecccccccccc-----HHHHHHHHHHhc--CCCceEEEEeeccChHHHHHHHh
Q 001758 139 KVIILDEVHERSVESD-----LVLVCVKQLLLK--KNDLRVVLMSATADITKYRDYFR 189 (1017)
Q Consensus 139 ~~IIIDEaHER~~~~d-----~ll~~lk~ll~~--~~~lklIlmSATld~~~~~~~f~ 189 (1017)
-+||||=++|-....+ ....+++.++.. .++.++++.|.+-....+.+.+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC
Confidence 3588888887544332 245556666655 67899999888765555555554
No 229
>PRK08116 hypothetical protein; Validated
Probab=96.22 E-value=0.054 Score=59.99 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCcHhHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ 62 (1017)
..+++.|++|+|||.++..+
T Consensus 115 ~gl~l~G~~GtGKThLa~ai 134 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACI 134 (268)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34999999999999655443
No 230
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.19 E-value=0.039 Score=65.67 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=72.0
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHH----hcCCCc--EEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCC
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLL----AENMEP--ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~ll----e~~~~~--IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t 114 (1017)
.++++.++||||+||||.+.++.. ..+..+ ++-+-+-|+.+....+.+++.++..+.. .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~------------- 319 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--V------------- 319 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--c-------------
Confidence 357899999999999998877753 333323 3444566788877777777766532210 0
Q ss_pred cEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC-CCceEEEEeeccChHHHHHHHh
Q 001758 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (1017)
Q Consensus 115 ~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~-~~lklIlmSATld~~~~~~~f~ 189 (1017)
-+..-+...+. .+.++++++||.+= |+-....+...+..+.... +.-.+++++||.....+.+...
T Consensus 320 ----~~~~Dl~~aL~----~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~ 386 (484)
T PRK06995 320 ----KDAADLRLALS----ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQ 386 (484)
T ss_pred ----CCchhHHHHHH----hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHH
Confidence 00111111221 23377899999986 4433332333333222211 3347899999987666555443
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=96.13 E-value=0.023 Score=61.72 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCcHhHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ 62 (1017)
..++|.|++|+|||.++-.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~ 65 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAA 65 (234)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57899999999999765433
No 232
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.12 E-value=0.057 Score=61.26 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHH---hcCCCcEEE--eccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcE
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLL---AENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~ll---e~~~~~Iiv--tqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~I 116 (1017)
++++.++||+|+||||.+..+.. ..+. +|++ .-+.|.+|.......+...+. ++... .. ..++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~-~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~-~~--~~dp-- 181 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGK-KVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQ-KE--GADP-- 181 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCC-eEEEEecCccchhhHHHHHHHHHHcCc------eEEEe-CC--CCCH--
Confidence 46889999999999987766543 2332 3333 345566655544455554442 22110 00 0011
Q ss_pred EEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-------cCCCceEEEEeeccChHHHH
Q 001758 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATADITKYR 185 (1017)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-------~~~~lklIlmSATld~~~~~ 185 (1017)
.......+.... ..+|++||||=+- |....+-++.-++.+.. ..|+-.+++++||...+.+.
T Consensus 182 ----a~~v~~~l~~~~--~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~ 250 (318)
T PRK10416 182 ----ASVAFDAIQAAK--ARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS 250 (318)
T ss_pred ----HHHHHHHHHHHH--hCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH
Confidence 011112222111 1379999999998 66555555555554432 34667899999997544333
No 233
>PRK06893 DNA replication initiation factor; Validated
Probab=96.10 E-value=0.023 Score=61.48 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=26.7
Q ss_pred CceEEEEecccccccccc---HHHHHHHHHHhcCCCceEEEEeeccChHHHH
Q 001758 137 KYKVIILDEVHERSVESD---LVLVCVKQLLLKKNDLRVVLMSATADITKYR 185 (1017)
Q Consensus 137 ~~~~IIIDEaHER~~~~d---~ll~~lk~ll~~~~~lklIlmSATld~~~~~ 185 (1017)
++++|||||+|.-..+.+ .+..++..... ...++|++|++..+..+.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~l~ 140 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHALS 140 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHcc
Confidence 788999999994222222 23333433322 233567888886555443
No 234
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.08 E-value=0.0033 Score=40.13 Aligned_cols=11 Identities=73% Similarity=1.555 Sum_probs=5.8
Q ss_pred CCCCCCCCCCC
Q 001758 773 CRNGDSCIFSH 783 (1017)
Q Consensus 773 C~~G~~C~f~H 783 (1017)
|++|++|.|.|
T Consensus 8 C~~~~~C~f~H 18 (19)
T PF14608_consen 8 CTNGDNCPFSH 18 (19)
T ss_pred CCCCCcCccCC
Confidence 55554455555
No 235
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.07 E-value=0.084 Score=66.65 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhcCCC------CCcEEEEecCCCCHHHHHHHHHhccC----
Q 001758 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------SFFKVHILHSSVDTEQALMAMKICKS---- 326 (1017)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~------~~~~v~~lHs~l~~~er~~i~~~f~~---- 326 (1017)
..+.+.+.+..+.... +|.+|||.|+....+.+.+.+...+ ....+..=..+ ..++..+++.|+.
T Consensus 506 ~~~~l~~~i~~~~~~~---pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~--~~~~~~~l~~f~~~~~~ 580 (705)
T TIGR00604 506 LVRNLGELLVEFSKII---PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD--AQETSDALERYKQAVSE 580 (705)
T ss_pred HHHHHHHHHHHHhhcC---CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC--cchHHHHHHHHHHHHhc
Confidence 3444555555555544 4789999999999998888765321 11122211111 1456667777743
Q ss_pred Cc-EEEEEc--CcccccccCCC--eeEEEeCCccc
Q 001758 327 HR-KVILAT--NIAESSVTIPK--VAYVIDSCRSL 356 (1017)
Q Consensus 327 gr-kVIVAT--niaetGIdIP~--V~~VId~G~~k 356 (1017)
++ -|++|+ ....+|||++| .+.||-.|++-
T Consensus 581 ~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 581 GRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred CCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 44 799999 89999999996 68888888874
No 236
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.05 E-value=0.02 Score=59.51 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=16.9
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~ 62 (1017)
+.+++++++.|++|+|||.....+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAI 67 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHH
Confidence 456789999999999999554433
No 237
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.04 E-value=0.035 Score=65.46 Aligned_cols=118 Identities=18% Similarity=0.263 Sum_probs=66.3
Q ss_pred CcEEEEcCCCCcHhHHHHHHH---HhcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFL---LAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l---le~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
.+++++|++|+||||.+..+. .+.+.+ .++.+-+.|.+|....+.++...+.++ .+ .. ...+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~---~~-----~~~d--- 161 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG---DP-----DNKD--- 161 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee---cC-----CccC---
Confidence 478999999999998776554 333433 344445556666665555666544331 00 00 0000
Q ss_pred ECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-cCCCceEEEEeeccC
Q 001758 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATAD 180 (1017)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-~~~~lklIlmSATld 180 (1017)
....+.+.+.. ...+++||||.+- |....+-++.-++.+.. ..++.-+++++||..
T Consensus 162 -~~~i~~~al~~----~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 162 -AVEIAKEGLEK----FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred -HHHHHHHHHHH----hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 11223333332 1245999999996 33333444444444433 357788999999874
No 238
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.03 E-value=0.02 Score=63.28 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME 69 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~ 69 (1017)
+....++++..+..++.+++.||+|+|||+.+-.+....+..
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 455667788888899999999999999998776555443433
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.02 E-value=0.034 Score=60.37 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCcHhHHHHHHH
Q 001758 42 NRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~l 63 (1017)
+..+++.||+|+|||+.+-.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~ 66 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAAC 66 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999997664443
No 240
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.064 Score=62.45 Aligned_cols=111 Identities=20% Similarity=0.173 Sum_probs=72.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc-EEEEEcCccc--ccccCCCeeEEEeC
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAE--SSVTIPKVAYVIDS 352 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVIVATniae--tGIdIP~V~~VId~ 352 (1017)
...|||+.|+.-+--++...+.... +....+|--.+.++-.+.-..|-.|| +|++-|.-+- +--+|-||+-||.
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~--i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf- 628 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEE--ISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF- 628 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhh--cchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE-
Confidence 3579999999999888888887433 22222222222222222234455566 9999996542 5678889999997
Q ss_pred CccceeeecCCCCccccceeecCHhhHHHhcCCCCCCC-----CCcEEEEechhhh
Q 001758 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-----DGQVYRLVTKSFF 403 (1017)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-----~G~c~rLys~~~~ 403 (1017)
|.+|+...-| ++...+.+|+.-.+ .-.|-.||++-+-
T Consensus 629 -------YqpP~~P~FY-------sEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 629 -------YQPPNNPHFY-------SEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred -------ecCCCCcHHH-------HHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9999887766 55677887763222 3468889998543
No 241
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.92 E-value=0.085 Score=57.52 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=33.3
Q ss_pred CceEEEEeccccccccccHHHHHHHHHHhcC-CCceEEEEeeccChHHHHHHHh
Q 001758 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (1017)
Q Consensus 137 ~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~-~~lklIlmSATld~~~~~~~f~ 189 (1017)
++++|||||++.-. .+++-..++-.++..| .+.+-+++|.-++.+.+.+.++
T Consensus 162 ~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 162 NVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred cCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 78999999999433 5566655665555544 2234455555566677777664
No 242
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.90 E-value=0.015 Score=68.90 Aligned_cols=66 Identities=29% Similarity=0.490 Sum_probs=54.8
Q ss_pred CCC-chHHHHHHHHHHHcCCcEEEEcCCCCcHhHH---HHHHHHhcCCCcEEEeccHHHHHHHHHHHHHh
Q 001758 25 SLP-VMSLREKIVEKVLENRVTLIVGETGCGKSSQ---VPQFLLAENMEPILCTQPRRFAVVAVAKMVAK 90 (1017)
Q Consensus 25 ~LP-i~~~Q~eil~ai~~~~~vII~apTGSGKTtq---ip~~lle~~~~~IivtqPrrlaa~s~a~rva~ 90 (1017)
.|| +...|..++++++.+...+|.||+|+|||.. +..-+.+....+|+|+.|.-+|+.++|+.+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred CchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 344 6788999999999999999999999999933 33334455667999999999999999998866
No 243
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.88 E-value=0.058 Score=60.72 Aligned_cols=86 Identities=24% Similarity=0.334 Sum_probs=49.2
Q ss_pred HHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhc----CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeecccccc
Q 001758 35 IVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHL 110 (1017)
Q Consensus 35 il~ai~~~~~vII~apTGSGKTtqip~~lle~----~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~ 110 (1017)
+..++..+++++|+|+|||||||.+-.++-.. ...+|+++....... ..-...+.+..+
T Consensus 125 L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~------------~~~~~~v~~~~~----- 187 (299)
T TIGR02782 125 LREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ------------CAAPNVVQLRTS----- 187 (299)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc------------CCCCCEEEEEec-----
Confidence 34446677899999999999999876554332 134666655432211 111122222211
Q ss_pred CCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccc
Q 001758 111 SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (1017)
Q Consensus 111 ~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaH 147 (1017)
.+. .|...+++.... .+.+.||+.|+-
T Consensus 188 -~~~----~~~~~~l~~aLR-----~~pD~iivGEiR 214 (299)
T TIGR02782 188 -DDA----ISMTRLLKATLR-----LRPDRIIVGEVR 214 (299)
T ss_pred -CCC----CCHHHHHHHHhc-----CCCCEEEEeccC
Confidence 111 166666665442 178999999995
No 244
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.87 E-value=0.025 Score=62.31 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhcC
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~~ 67 (1017)
..++|.||+|+||||.+-.++.+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4799999999999998887766544
No 245
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.87 E-value=0.027 Score=62.95 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=48.9
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhc----C-CC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCc
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAE----N-ME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~----~-~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~ 115 (1017)
+++++++||||+||||.+..+.... + .. .++-+-+.|..+.......+..++.++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~------------------ 255 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK------------------ 255 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee------------------
Confidence 4589999999999998877665422 3 22 3444556566665555555554443220
Q ss_pred EEEECHHHHHHHHHhcCCCccCceEEEEecc
Q 001758 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEV 146 (1017)
Q Consensus 116 Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEa 146 (1017)
...++.-+...+.. +.++++||||.+
T Consensus 256 -~~~~~~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 256 -VARDPKELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred -ccCCHHHHHHHHHH----ccCCCEEEEeCC
Confidence 01134445444442 236899999975
No 246
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.86 E-value=0.026 Score=69.95 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=53.5
Q ss_pred CCchHHHHHHHHHHHcC-CcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHh
Q 001758 26 LPVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAK 90 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~-~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva~ 90 (1017)
-.+.+.|.+++..+..+ ..++|.||+|+|||+.+..++... ...+|+++.|+..|+..+.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 45789999999998876 789999999999997776655432 223899999999999999999876
No 247
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.83 E-value=0.2 Score=61.19 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=85.2
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHH---HHhcCCCcEEEeccHHHHHHHHHHHHHhhcC---C-----ccCCeeeEe-----
Q 001758 40 LENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRN---C-----ELGGEVGYH----- 103 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~---lle~~~~~IivtqPrrlaa~s~a~rva~e~~---~-----~lg~~VGy~----- 103 (1017)
.+.+-.++.+|=|.|||+.+-.+ ++.....+|++|.|+.-.+.++.+++...+. . ..+..+...
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~ 264 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDEN 264 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeE
Confidence 34578899999999999665533 2221235899999998888888777665432 0 111111111
Q ss_pred ecccc--ccC-CCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccC
Q 001758 104 IGHSK--HLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (1017)
Q Consensus 104 v~~~~--~~~-~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld 180 (1017)
+.+.. ... ..+.|.|++-+ .+...-..+++||||||+ .+..+.+..++-.+.. .+-++|++|.+-+
T Consensus 265 I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAA--fI~~~~l~aIlP~l~~--~~~k~IiISS~~~ 333 (752)
T PHA03333 265 LEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAA--FVNPGALLSVLPLMAV--KGTKQIHISSPVD 333 (752)
T ss_pred EEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcc--cCCHHHHHHHHHHHcc--CCCceEEEeCCCC
Confidence 11111 111 12456665433 122222368999999999 3455666665544432 3679999999988
Q ss_pred hHHHHHHHhhc
Q 001758 181 ITKYRDYFRDL 191 (1017)
Q Consensus 181 ~~~~~~~f~~~ 191 (1017)
.+.+..++.++
T Consensus 334 ~~s~tS~L~nL 344 (752)
T PHA03333 334 ADSWISRVGEV 344 (752)
T ss_pred cchHHHHhhhh
Confidence 88888777764
No 248
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.81 E-value=0.041 Score=58.95 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHH
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~l 63 (1017)
.+..++|.||+|+|||+.+-.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45789999999999998775554
No 249
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.79 E-value=0.0056 Score=39.08 Aligned_cols=19 Identities=47% Similarity=1.097 Sum_probs=17.0
Q ss_pred ccccccccccCCCCCCCCCCC
Q 001758 736 LCVYFINGSCNRGTGCPFSHS 756 (1017)
Q Consensus 736 ~C~~f~~G~C~~G~~C~f~H~ 756 (1017)
+|+||.. |++|++|+|+|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4998877 999999999995
No 250
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.77 E-value=0.065 Score=59.52 Aligned_cols=124 Identities=17% Similarity=0.245 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCcHhHHHHHHH---HhcCCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFL---LAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l---le~~~~~-IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
++++++|++|+||||.+..+. .+.+.+. ++-+-+.|..++...+.++..++..+ + .... ..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~--~~~~----~~------ 137 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---I--KQKE----GA------ 137 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---E--eCCC----CC------
Confidence 578899999999998766654 3333322 23334566666655555556544221 0 0000 00
Q ss_pred ECH-HHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-------cCCCceEEEEeeccChHHHH
Q 001758 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATADITKYR 185 (1017)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-------~~~~lklIlmSATld~~~~~ 185 (1017)
-| ....+.+... ...+|++||||=+- |......++.-++.+.. ..++-.+++++||...+.+.
T Consensus 138 -dp~~~~~~~l~~~--~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 138 -DPAAVAFDAIQKA--KARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred -CHHHHHHHHHHHH--HHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH
Confidence 01 2222222211 11379999999998 44433344443443332 22678899999997554443
No 251
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.75 E-value=0.1 Score=64.46 Aligned_cols=145 Identities=19% Similarity=0.186 Sum_probs=86.7
Q ss_pred CCCchHHHHHHHHHHH-----cCCcEEEEcCCCCcHhHHHHHH---HHhcC-CCcEEEeccHHHHHHHHHHHHHhhcCCc
Q 001758 25 SLPVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQF---LLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~-----~~~~vII~apTGSGKTtqip~~---lle~~-~~~IivtqPrrlaa~s~a~rva~e~~~~ 95 (1017)
.+..++-|.++++.+. ..+.++|+|.-|=|||+.+=.. +.... ...|+||.|...+++++.+..-+-+. .
T Consensus 209 ~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~-~ 287 (758)
T COG1444 209 ELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLE-F 287 (758)
T ss_pred hhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHH-H
Confidence 4667777888666654 2358999999999999766522 22333 34899999999999888777654321 1
Q ss_pred cCC--eeeEeeccc-c-ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCce
Q 001758 96 LGG--EVGYHIGHS-K-HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1017)
Q Consensus 96 lg~--~VGy~v~~~-~-~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lk 171 (1017)
+|- .|.+....+ . ...+.-.|-|..|.... + .-++||||||= .+.. .+++.++... +
T Consensus 288 lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~-~---------~~DllvVDEAA--aIpl----plL~~l~~~~---~ 348 (758)
T COG1444 288 LGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ-E---------EADLLVVDEAA--AIPL----PLLHKLLRRF---P 348 (758)
T ss_pred hCCccccccccccceeeecCCceeEEeeCcchhc-c---------cCCEEEEehhh--cCCh----HHHHHHHhhc---C
Confidence 111 111110000 0 11233457777776553 1 25789999997 3333 3444444333 5
Q ss_pred EEEEeeccC-----hHHHHHHHh
Q 001758 172 VVLMSATAD-----ITKYRDYFR 189 (1017)
Q Consensus 172 lIlmSATld-----~~~~~~~f~ 189 (1017)
.++||.|+. ...|+-.|.
T Consensus 349 rv~~sTTIhGYEGtGRgF~lkf~ 371 (758)
T COG1444 349 RVLFSTTIHGYEGTGRGFSLKFL 371 (758)
T ss_pred ceEEEeeecccccCChHHHHHHH
Confidence 689999973 344554443
No 252
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.71 E-value=0.084 Score=61.75 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.1
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHh
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle 65 (1017)
.+++|.||+|+|||+.+-.++.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999877666543
No 253
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.061 Score=63.74 Aligned_cols=40 Identities=35% Similarity=0.459 Sum_probs=26.5
Q ss_pred CceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccC
Q 001758 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (1017)
Q Consensus 137 ~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld 180 (1017)
.+.++|||||| .+..+....+||.+-. +...+++.-||-+
T Consensus 121 ~~KV~IIDEah--~Ls~~A~NALLKtLEE--Pp~~viFILaTte 160 (484)
T PRK14956 121 KYKVYIIDEVH--MLTDQSFNALLKTLEE--PPAHIVFILATTE 160 (484)
T ss_pred CCEEEEEechh--hcCHHHHHHHHHHhhc--CCCceEEEeecCC
Confidence 78999999999 4555666677776643 3345555555533
No 254
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.69 E-value=0.0075 Score=70.19 Aligned_cols=50 Identities=28% Similarity=0.590 Sum_probs=40.1
Q ss_pred ccccccccccccccCCCCCCCCCCCCC-----------CCCcccccccccccCCCCCCCCCCCCC
Q 001758 732 GEAPLCVYFINGSCNRGTGCPFSHSLQ-----------AKRPACKFFYSLQGCRNGDSCIFSHDL 785 (1017)
Q Consensus 732 ~~~~~C~~f~~G~C~~G~~C~f~H~~~-----------~~~~~C~~f~~~g~C~~G~~C~f~H~~ 785 (1017)
.|.+.|. ++.|..|-.|+|.|+.. ....+|--| .+|.|..||.|-|.|..
T Consensus 199 fKir~C~---R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPef-rkG~C~rGD~CEyaHgv 259 (528)
T KOG1595|consen 199 FKIRRCS---RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEF-RKGSCERGDSCEYAHGV 259 (528)
T ss_pred eeecccC---CccCCCcccCCccCCCcccccCCcccccccCccCccc-ccCCCCCCCccccccce
Confidence 3666674 45889999999999541 124589999 99999999999999965
No 255
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.67 E-value=0.057 Score=61.26 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=26.4
Q ss_pred HHHHHHHH-HHHcCCcEEEEcCCCCcHhHHHHHHHH
Q 001758 30 SLREKIVE-KVLENRVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 30 ~~Q~eil~-ai~~~~~vII~apTGSGKTtqip~~ll 64 (1017)
+.+.+.+. ++..+++++|+|+|||||||.+-.++-
T Consensus 135 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 135 AAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH
Confidence 34555665 467889999999999999987755543
No 256
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.65 E-value=0.022 Score=63.84 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHH---HHhcC---CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeee
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~---lle~~---~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
+++-|.+++.. .++.++|.|..|||||+.+..- ++... ..+|+++..++.+|..+..|+...++........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 35678888887 6789999999999999766543 34433 2479999999999999999988854322100000
Q ss_pred EeeccccccCCCCcEEEECHHHHHHHHHhc-CCCc-cCceEEEEeccc
Q 001758 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDR-GLNA-LKYKVIILDEVH 147 (1017)
Q Consensus 102 y~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~-~l~l-~~~~~IIIDEaH 147 (1017)
-. ...........+.|+|-..+...+... .... ..-..-|+|+..
T Consensus 79 ~~-~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 79 NE-RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -H-HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc-cccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 000111123457788876665544321 1111 134556777766
No 257
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.59 E-value=0.031 Score=65.71 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=59.5
Q ss_pred cCCCCchHHHHHHHHHHHc--CCcEEEEcCCCCcHhHHHHHHHHhcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCe
Q 001758 23 FSSLPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~ai~~--~~~vII~apTGSGKTtqip~~lle~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~ 99 (1017)
..+|...+.+.+.+..+.+ +.-++|+|||||||||.+-.++.+.... .-++|. -+-
T Consensus 237 l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti---------------------EDP 295 (500)
T COG2804 237 LEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI---------------------EDP 295 (500)
T ss_pred HHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe---------------------eCC
Confidence 3567788888888877764 4689999999999998877776554432 113331 122
Q ss_pred eeEeecccccc--CCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccc
Q 001758 100 VGYHIGHSKHL--SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (1017)
Q Consensus 100 VGy~v~~~~~~--~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaH 147 (1017)
|-|.+..-.+. +++.. +|....++.+... +.++|+|.|+-
T Consensus 296 VE~~~~gI~Q~qVN~k~g---ltfa~~LRa~LRq-----DPDvImVGEIR 337 (500)
T COG2804 296 VEYQLPGINQVQVNPKIG---LTFARALRAILRQ-----DPDVIMVGEIR 337 (500)
T ss_pred eeeecCCcceeecccccC---CCHHHHHHHHhcc-----CCCeEEEeccC
Confidence 33433322222 22222 3555666665533 67899999995
No 258
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.56 E-value=0.0047 Score=68.90 Aligned_cols=25 Identities=40% Similarity=0.990 Sum_probs=16.1
Q ss_pred cccccccccccccCCCCCCCCCCCC
Q 001758 733 EAPLCVYFINGSCNRGTGCPFSHSL 757 (1017)
Q Consensus 733 ~~~~C~~f~~G~C~~G~~C~f~H~~ 757 (1017)
...+|+||+.|.|++|.+|+|||..
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGL 163 (486)
T ss_pred hhccchHhhccccccCcccccccCc
Confidence 3445666666666666666666664
No 259
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.54 E-value=0.066 Score=60.18 Aligned_cols=130 Identities=17% Similarity=0.268 Sum_probs=78.2
Q ss_pred CCchHHHHHHHHHHHcC--CcEEEEcCCCCcHhHHHHHHHHh-----cCCCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 001758 26 LPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLA-----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~--~~vII~apTGSGKTtqip~~lle-----~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~ 98 (1017)
-|....|.-++++++.. +-|.+.|..|||||.+....-++ ..+++|+++-|. .++|.
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~----------------vpvG~ 290 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT----------------VPVGE 290 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC----------------cCccc
Confidence 57788999999999865 56889999999999554444333 234689998773 25667
Q ss_pred eeeEeecccccc-C-------CC----CcEEEECHHHHHHHHHhcCCCcc----------CceEEEEeccccccccccHH
Q 001758 99 EVGYHIGHSKHL-S-------ER----SKIVFKTAGVLLDEMRDRGLNAL----------KYKVIILDEVHERSVESDLV 156 (1017)
Q Consensus 99 ~VGy~v~~~~~~-~-------~~----t~Iiv~T~g~Ll~~l~~~~l~l~----------~~~~IIIDEaHER~~~~d~l 156 (1017)
.+||-.+.+... . ++ ...-=|+.+.|-..+....+... .=.+||||||+. +..
T Consensus 291 dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQN--LTp--- 365 (436)
T COG1875 291 DIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQN--LTP--- 365 (436)
T ss_pred ccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhc--cCH---
Confidence 777764432111 0 11 11222345566555444333222 336799999993 332
Q ss_pred HHHHHHHHhc-CCCceEEEEee
Q 001758 157 LVCVKQLLLK-KNDLRVVLMSA 177 (1017)
Q Consensus 157 l~~lk~ll~~-~~~lklIlmSA 177 (1017)
..+|.++.+ .+.-|||++.-
T Consensus 366 -heikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 366 -HELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred -HHHHHHHHhccCCCEEEEcCC
Confidence 234444433 56678887653
No 260
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.54 E-value=0.057 Score=66.72 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=24.0
Q ss_pred CceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 137 ~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
+++++||||+|. +..+-...+||.+-.-.++.++|+.+
T Consensus 119 r~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 119 RFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 789999999993 44445566677554333444544433
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.53 E-value=0.044 Score=60.46 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCcHhHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ 62 (1017)
.++++.||+|+|||+.+-.+
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47899999999999765333
No 262
>PRK06921 hypothetical protein; Provisional
Probab=95.51 E-value=0.082 Score=58.50 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHH
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~l 63 (1017)
.+..+++.|+||+|||+++-.++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia 138 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAA 138 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 36789999999999997655443
No 263
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.50 E-value=0.081 Score=58.81 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=35.7
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhcCCC--------cEEEec-cHHHHHHHHHHHHHhhcCCcc
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAENME--------PILCTQ-PRRFAVVAVAKMVAKGRNCEL 96 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~~~~--------~Iivtq-Prrlaa~s~a~rva~e~~~~l 96 (1017)
.+++|+|+||-|||+.+-+|...+... .|+++| |-.--...++..+-..++.+.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 589999999999999999988655331 344443 333334455666666665543
No 264
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.49 E-value=0.12 Score=60.51 Aligned_cols=128 Identities=16% Similarity=0.246 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCcHhHHHHHHH---HhcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFL---LAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l---le~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
.++.++|++|+||||.+..+. ...+.+ .++.+-+.|.+|....+..++..+.++ +..... .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~-----~~~~~~------~---- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPF-----YGSYTE------S---- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeE-----EeecCC------C----
Confidence 478999999999998766554 333433 334455667676655555555443222 100000 0
Q ss_pred ECH-HHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHH-hcCCCceEEEEeecc--ChHHHHHHHh
Q 001758 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATA--DITKYRDYFR 189 (1017)
Q Consensus 119 ~T~-g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll-~~~~~lklIlmSATl--d~~~~~~~f~ 189 (1017)
.| .+..+.+..- ...++++||||=+- |.-..+-++.-++.+. ...|+..+++++||. ++....+-|.
T Consensus 166 -dp~~i~~~~l~~~--~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 166 -DPVKIASEGVEKF--KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred -CHHHHHHHHHHHH--HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 11 1222222211 01278999999998 5444444444444443 335777899999996 3344445554
No 265
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.49 E-value=0.083 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHhHHHHHHHHhc
Q 001758 45 TLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 45 vII~apTGSGKTtqip~~lle~ 66 (1017)
+++.||.|+|||+.+-.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999998765554443
No 266
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.43 E-value=0.13 Score=64.18 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=26.5
Q ss_pred CCCCchHHHHHHHHHHH-----c---CCcEEEEcCCCCcHhHHHHHHH
Q 001758 24 SSLPVMSLREKIVEKVL-----E---NRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~ai~-----~---~~~vII~apTGSGKTtqip~~l 63 (1017)
..||=++-|.+.|..+. . +..+.|.|+||+|||+.+-..+
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 46887777666554433 1 1235699999999997665543
No 267
>PRK09183 transposase/IS protein; Provisional
Probab=95.40 E-value=0.083 Score=58.26 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.0
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~l 63 (1017)
+..+.++++.||+|+|||+....+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 6678899999999999997766553
No 268
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.026 Score=62.15 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCcc--CceEEEEecccc
Q 001758 122 GVLLDEMRDRGLNAL--KYKVIILDEVHE 148 (1017)
Q Consensus 122 g~Ll~~l~~~~l~l~--~~~~IIIDEaHE 148 (1017)
.+|+++++....+.. .-+.|.|||++.
T Consensus 145 NillkLlqaadydV~rAerGIIyIDEIDK 173 (408)
T COG1219 145 NILLKLLQAADYDVERAERGIIYIDEIDK 173 (408)
T ss_pred HHHHHHHHHcccCHHHHhCCeEEEechhh
Confidence 478888886544443 778999999993
No 269
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.29 E-value=0.098 Score=56.00 Aligned_cols=102 Identities=18% Similarity=0.307 Sum_probs=66.4
Q ss_pred CCCCchHHHHHHHHHHHc---CCcEEEEcCCCCcHhHHH-HHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 24 SSLPVMSLREKIVEKVLE---NRVTLIVGETGCGKSSQV-PQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~ai~~---~~~vII~apTGSGKTtqi-p~~l--le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
.++=|++.|.++...+.+ +++.+...-.|.|||+.+ |... +.++.+-+.++.|+.++ .+..+.+...++.-++
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll-~q~~~~L~~~lg~l~~ 98 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALL-EQMRQMLRSRLGGLLN 98 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHH-HHHHHHHHHHHHHHhC
Confidence 357789999999999885 479999999999999554 4443 34444556677777655 3344444444443333
Q ss_pred CeeeEeecccccc-----------------CCCCcEEEECHHHHHHH
Q 001758 98 GEVGYHIGHSKHL-----------------SERSKIVFKTAGVLLDE 127 (1017)
Q Consensus 98 ~~VGy~v~~~~~~-----------------~~~t~Iiv~T~g~Ll~~ 127 (1017)
..| |.+.|+... .....|+++||+.++..
T Consensus 99 r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 99 RRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred Cee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 333 333444322 23456999999998754
No 270
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.27 E-value=0.1 Score=67.84 Aligned_cols=131 Identities=15% Similarity=0.248 Sum_probs=65.5
Q ss_pred HHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEecc------HHHHHHHHHHHHHhhcCCccCCeeeEeecccc
Q 001758 35 IVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQP------RRFAVVAVAKMVAKGRNCELGGEVGYHIGHSK 108 (1017)
Q Consensus 35 il~ai~~~~~vII~apTGSGKTtqip~~lle~~~~~IivtqP------rrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~ 108 (1017)
.+......+.++|+||.|+||||.+.+++...+ ..+.++.. .+. ...+...+.... ... + ....
T Consensus 25 ~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f-~~~l~~~l~~~~----~~~-~---~~~~ 94 (903)
T PRK04841 25 KLSGANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERF-ASYLIAALQQAT----NGH-C---SKSE 94 (903)
T ss_pred HHhcccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHH-HHHHHHHHHHhc----Ccc-c---chhh
Confidence 334444568999999999999999999986555 44444432 222 122222222111 000 0 0000
Q ss_pred ccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc-CCCceEEEEeecc
Q 001758 109 HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATA 179 (1017)
Q Consensus 109 ~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~-~~~lklIlmSATl 179 (1017)
...... -..+...++..+.........--+||||++|. ++...+...+..++.. .+.+++|+.|-+.
T Consensus 95 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~--~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 95 ALAQKR--QYASLSSLFAQLFIELADWHQPLYLVIDDYHL--ITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred hhhccC--CcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCc--CCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 000000 00122222222221100112456899999993 3444455566666654 5568888888764
No 271
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.25 E-value=0.07 Score=57.30 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=23.5
Q ss_pred CceEEEEecccccccc---ccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 137 KYKVIILDEVHERSVE---SDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 137 ~~~~IIIDEaHER~~~---~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
.+++||||++|.-.-. .+.+..++..+... +.++|+.|..
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~ 139 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDR 139 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCC
Confidence 7899999999942211 13444445544433 3466666645
No 272
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.25 E-value=0.13 Score=58.50 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCC--cEEEEcCCCCcHhHHHHHHHHh
Q 001758 32 REKIVEKVLENR--VTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 32 Q~eil~ai~~~~--~vII~apTGSGKTtqip~~lle 65 (1017)
...+..++..++ .+++.||+|+|||+.+-.+..+
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 334444455555 7999999999999877665544
No 273
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.24 E-value=0.14 Score=71.08 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=82.2
Q ss_pred CCCchHHHHHHHHHHHcC--CcEEEEcCCCCcHhHHHHHH--HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCee
Q 001758 25 SLPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQF--LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~--~~vII~apTGSGKTtqip~~--lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~V 100 (1017)
.+++.+-|.+++..+..+ ++.||.|+.|+||||.+-.. +++.....|+++.|+.-+|..+.+.. |..-. ++
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~----g~~A~-Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKI----PRLAS-TF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHh----cchhh-hH
Confidence 578999999999998864 89999999999999776544 33443446777778776666555432 21110 00
Q ss_pred eEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 101 Gy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
. ++-...... ....|...++ .....+..-++||||||- +++...+..+++... ..+.|||++.=+
T Consensus 502 ~---~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~--~~garvVlvGD~ 566 (1960)
T TIGR02760 502 I---TWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAE--QHNSKLILLNDS 566 (1960)
T ss_pred H---HHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHh--hcCCEEEEEcCh
Confidence 0 000000000 1112223333 122223478999999998 677766777766543 456789987655
No 274
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.23 E-value=0.14 Score=53.52 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=25.8
Q ss_pred HHHHHHHHH-HHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 30 SLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 30 ~~Q~eil~a-i~~~~~vII~apTGSGKTtqip~~l 63 (1017)
+.+.+.+.. +..+.+++|+|||||||||.+-.++
T Consensus 12 ~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 445555555 5578999999999999999875544
No 275
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.095 Score=63.95 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=25.6
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.++.++||||+|. ++.+-...+||.+-.-..+.++|+.|
T Consensus 123 gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEe
Confidence 3799999999993 45555667777654434455555543
No 276
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.22 E-value=0.071 Score=65.64 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=24.7
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
.++.++||||||. ++.+-...+||.+-.-.+..++|+.
T Consensus 118 g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 3799999999993 4555666777755443344444443
No 277
>PHA00729 NTP-binding motif containing protein
Probab=95.21 E-value=0.062 Score=57.57 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=20.3
Q ss_pred HHHHHHcC--CcEEEEcCCCCcHhHHHHHH
Q 001758 35 IVEKVLEN--RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 35 il~ai~~~--~~vII~apTGSGKTtqip~~ 62 (1017)
+++.+..+ .+++|.|++|+|||++....
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 44555443 48999999999999865443
No 278
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.16 E-value=0.13 Score=59.04 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=27.6
Q ss_pred HHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC-CcEEEecc
Q 001758 38 KVLENRVTLIVGETGCGKSSQVPQFLLAENM-EPILCTQP 76 (1017)
Q Consensus 38 ai~~~~~vII~apTGSGKTtqip~~lle~~~-~~IivtqP 76 (1017)
++..+.+++|+|+|||||||.+-.++-.-.. .+++....
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 3567899999999999999988665543322 35655544
No 279
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0058 Score=69.16 Aligned_cols=49 Identities=24% Similarity=0.619 Sum_probs=34.0
Q ss_pred ccccccccccccCCCCCCCCCCCC---CCCCccccccccccc-CCCCCCCCCCCCC
Q 001758 734 APLCVYFINGSCNRGTGCPFSHSL---QAKRPACKFFYSLQG-CRNGDSCIFSHDL 785 (1017)
Q Consensus 734 ~~~C~~f~~G~C~~G~~C~f~H~~---~~~~~~C~~f~~~g~-C~~G~~C~f~H~~ 785 (1017)
...|+||+.|.|-+- .|+|.|.. .....+|.|+ .+++ |.+-. |-|.|..
T Consensus 32 ~t~C~~w~~~~~C~k-~C~YRHSe~~~kr~e~~CYwe-~~p~gC~k~~-CgfRH~~ 84 (667)
T KOG4791|consen 32 ETVCTLWQEGRCCRK-VCRYRHSEIDKKRSEIPCYWE-NQPTGCQKLN-CGFRHNR 84 (667)
T ss_pred cchhhhhhhcCcccc-cccchhhHHhhhcCcccceee-cCCCccCCCc-cccccCC
Confidence 345999987654332 69999875 2235679888 5565 99765 9999944
No 280
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.082 Score=61.30 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=17.3
Q ss_pred cEEEEcCCCCcHhHHHHHHHHh
Q 001758 44 VTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~lle 65 (1017)
.+++.||.|+||||.+-.+..+
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHH
Confidence 4699999999999876655443
No 281
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.12 E-value=0.097 Score=56.30 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHH
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~l 63 (1017)
.++.+++.||+|+|||+++-.+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~ 63 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALV 63 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34689999999999998665544
No 282
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.09 E-value=0.098 Score=65.88 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=29.1
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccChHHH
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKY 184 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld~~~~ 184 (1017)
.++.++||||||. +..+....++|.+-.-...+++|+. |-+..++
T Consensus 118 gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKL 162 (944)
T ss_pred CCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE--CCCchhc
Confidence 3789999999993 4556666777766544445555554 5444443
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.03 E-value=0.14 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHhHHHHHHHHhc
Q 001758 44 VTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~lle~ 66 (1017)
.++|.|++|+|||+.+..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999887776554
No 284
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.03 E-value=0.0085 Score=66.92 Aligned_cols=28 Identities=46% Similarity=0.946 Sum_probs=24.0
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCCC
Q 001758 761 RPACKFFYSLQGCRNGDSCIFSHDLGQPV 789 (1017)
Q Consensus 761 ~~~C~~f~~~g~C~~G~~C~f~H~~~~~~ 789 (1017)
..||+|| ..|.|+||.+|||+|....+-
T Consensus 140 MkpC~ff-Leg~CRF~enCRfSHG~~V~l 167 (486)
T KOG2185|consen 140 MKPCKFF-LEGRCRFGENCRFSHGLDVPL 167 (486)
T ss_pred hccchHh-hccccccCcccccccCcccch
Confidence 4579999 899999999999999875543
No 285
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.03 E-value=0.1 Score=62.54 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=92.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCCc--EEEEEcCcccccccCCCeeEEEeCC
Q 001758 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSC 353 (1017)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr--kVIVATniaetGIdIP~V~~VId~G 353 (1017)
+.++|+|..-.+.+.-+.++|. ..++..+-|.|.....+|..+.+.|.... -.+++|-..+-||++-..+.||-
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~--yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF-- 1119 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLV--YRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF-- 1119 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHH--hhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE--
Confidence 5689999988888888888887 34578888999999999999999998755 77899999999999999999997
Q ss_pred ccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhc
Q 001758 354 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1017)
Q Consensus 354 ~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1017)
||...+...- .+|+-|+-|-|.++.-.+|||.++...+
T Consensus 1120 ------YdSDWNPT~D-------~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1120 ------YDSDWNPTAD-------QQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred ------ecCCCCcchh-------hHHHHHHHhccCccceeeeeecccccHH
Confidence 8877665433 4667788888888888999999986554
No 286
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.13 Score=61.55 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=24.0
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
.++.++||||+|. +..+-...++|.+-.-.+...+|+.
T Consensus 115 ~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 115 SKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred CCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 4899999999993 3444455556655444444555554
No 287
>PHA02244 ATPase-like protein
Probab=95.03 E-value=0.26 Score=56.57 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCCch-HHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC
Q 001758 25 SLPVM-SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM 68 (1017)
Q Consensus 25 ~LPi~-~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~ 68 (1017)
.-|.. .....+...+..+..++|.||||+|||+.+-.+....+.
T Consensus 101 ~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 101 SNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444 455566677788899999999999999877666554443
No 288
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.03 E-value=0.041 Score=60.50 Aligned_cols=123 Identities=25% Similarity=0.246 Sum_probs=61.5
Q ss_pred HHHHHHHHHHH------cCCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEe
Q 001758 30 SLREKIVEKVL------ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1017)
Q Consensus 30 ~~Q~eil~ai~------~~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~ 103 (1017)
..|+..+.++. ...+.+..||.|+|||..+..+..+..... .-|-|++ ..-.+.++|..++.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~---~~~~rvl----~lnaSderGisvvr----- 106 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQ---LFPCRVL----ELNASDERGISVVR----- 106 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCcc---ccccchh----hhcccccccccchh-----
Confidence 45666666554 346899999999999977666654432210 0111111 11122344433211
Q ss_pred eccccccCCCCcEEEECHHHHHHHH-HhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 104 IGHSKHLSERSKIVFKTAGVLLDEM-RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 104 v~~~~~~~~~t~Iiv~T~g~Ll~~l-~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
. +. -....+.... ...+-....|.+||+|||| ++..|-...+.|.+-......+.|+..--
T Consensus 107 --~-Ki---------k~fakl~~~~~~~~~~~~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 107 --E-KI---------KNFAKLTVLLKRSDGYPCPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred --h-hh---------cCHHHHhhccccccCCCCCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 0 00 0011111111 1112223378999999999 55566666655555443445566665443
No 289
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.00 E-value=0.14 Score=60.98 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCcHhHHHH
Q 001758 43 RVTLIVGETGCGKSSQVP 60 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip 60 (1017)
+.+++.||+|+|||+++-
T Consensus 131 n~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CeEEEEcCCCCcHHHHHH
Confidence 369999999999997654
No 290
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=94.99 E-value=0.022 Score=65.17 Aligned_cols=55 Identities=29% Similarity=0.736 Sum_probs=46.8
Q ss_pred cccccccc-cccCCCCCCCCCCCC------------------CCCCcccccccccccCCC-CCCCCCCCCCCCCC
Q 001758 735 PLCVYFIN-GSCNRGTGCPFSHSL------------------QAKRPACKFFYSLQGCRN-GDSCIFSHDLGQPV 789 (1017)
Q Consensus 735 ~~C~~f~~-G~C~~G~~C~f~H~~------------------~~~~~~C~~f~~~g~C~~-G~~C~f~H~~~~~~ 789 (1017)
..|.+|.. |.|.+|..|++.|.. ..+++.|.+|...|.|+| |++|+|.|......
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence 56999995 999999999999984 113457999999999999 99999999886655
No 291
>PRK09087 hypothetical protein; Validated
Probab=94.96 E-value=0.2 Score=54.07 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCcHhHHHHHH
Q 001758 42 NRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~ 62 (1017)
++.++|.||+|||||+++-.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~ 64 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIW 64 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 456999999999999877543
No 292
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.14 Score=62.02 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=21.3
Q ss_pred HHHHHHcCC---cEEEEcCCCCcHhHHHHHHHH
Q 001758 35 IVEKVLENR---VTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 35 il~ai~~~~---~vII~apTGSGKTtqip~~ll 64 (1017)
+..++..++ .+++.||.|+||||.+-.+..
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555554 378999999999987655543
No 293
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.95 E-value=0.12 Score=61.44 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCcHhHHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l 63 (1017)
+.++|.||+|+|||+++-.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~ 162 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAV 162 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 458999999999997654443
No 294
>PRK12377 putative replication protein; Provisional
Probab=94.95 E-value=0.35 Score=52.89 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCcHhHHHHHH---HHhcCCCcEEEe
Q 001758 42 NRVTLIVGETGCGKSSQVPQF---LLAENMEPILCT 74 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~---lle~~~~~Iivt 74 (1017)
...+++.|++|+|||+++..+ +.+.+...++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 368999999999999654433 444444333333
No 295
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.11 Score=63.59 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=20.8
Q ss_pred HHHHHHcCC---cEEEEcCCCCcHhHHHHHHHH
Q 001758 35 IVEKVLENR---VTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 35 il~ai~~~~---~vII~apTGSGKTtqip~~ll 64 (1017)
+..++.+++ .++++||.|+||||.+-.+..
T Consensus 27 L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 27 LSSALERGRLHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334455553 569999999999987655543
No 296
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.15 Score=61.75 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=24.5
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
.++.++|||||| .+..+....++|.+-.-.+..++|+.
T Consensus 118 ~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 118 GRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred CCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 389999999999 34445556666655443445555553
No 297
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.84 E-value=0.096 Score=60.27 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=25.7
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
..+.+|||||||. ++..-...++|.+-.-.++..+|++|
T Consensus 140 g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3789999999994 45555666777665433444555554
No 298
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.24 Score=54.50 Aligned_cols=114 Identities=18% Similarity=0.341 Sum_probs=59.6
Q ss_pred HHHHHcCCcEEEEcCCCCcHhHHHHHH---HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCC
Q 001758 36 VEKVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSE 112 (1017)
Q Consensus 36 l~ai~~~~~vII~apTGSGKTtqip~~---lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~ 112 (1017)
.+.+..+.++++.|++|+|||.++..+ +...+...++++.|. +...++...+. |.
T Consensus 99 ~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~e------l~~~Lk~~~~~--~~-------------- 156 (254)
T COG1484 99 VEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD------LLSKLKAAFDE--GR-------------- 156 (254)
T ss_pred HHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHH------HHHHHHHHHhc--Cc--------------
Confidence 334457789999999999999654443 333333344444442 12222221110 00
Q ss_pred CCcEEEECHHHHHHHHHhcCCCccCceEEEEecccccccc---ccHHHHHHHHHHhcCCCceEEEEeeccChHHHHHHHh
Q 001758 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE---SDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (1017)
Q Consensus 113 ~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~---~d~ll~~lk~ll~~~~~lklIlmSATld~~~~~~~f~ 189 (1017)
..+.|++.+ .+++++||||+=-.... .+.+..++-.....+ .+ ++|.=.+.+...+.|+
T Consensus 157 -------~~~~l~~~l-------~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 157 -------LEEKLLREL-------KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDELFG 218 (254)
T ss_pred -------hHHHHHHHh-------hcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHhhcc
Confidence 122333322 38999999999732222 244444443333332 23 5555556666666665
No 299
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.81 E-value=0.27 Score=59.19 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=19.7
Q ss_pred HHcCC---cEEEEcCCCCcHhHHHHHHHH
Q 001758 39 VLENR---VTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 39 i~~~~---~vII~apTGSGKTtqip~~ll 64 (1017)
+.+++ .++++||.|+||||.+-.+..
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 44554 699999999999987655543
No 300
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.79 E-value=0.11 Score=61.77 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCcHhHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ 62 (1017)
+.++|.|++|+|||+++-.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai 161 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAA 161 (450)
T ss_pred CceEEECCCCCcHHHHHHHH
Confidence 45899999999999766433
No 301
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.78 E-value=0.088 Score=64.85 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=25.5
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.++.+|||||+|. +..+....++|.+-......++|+.+
T Consensus 118 gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3789999999993 34444555666655445556666544
No 302
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.74 E-value=0.42 Score=53.98 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCcHhHHHHHHH---HhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEE
Q 001758 42 NRVTLIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~l---le~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
++.+++.|++|+|||+++..+. .+.+...+++..|. +...+....+ .+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~------l~~~lk~~~~------------------~~----- 206 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE------FIRELKNSIS------------------DG----- 206 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH------HHHHHHHHHh------------------cC-----
Confidence 4689999999999997655443 33444445555552 1122222110 00
Q ss_pred ECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHH-HHHHHHHhcC-CCceEEEEeeccChHHHHHHHh
Q 001758 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVL-VCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (1017)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll-~~lk~ll~~~-~~lklIlmSATld~~~~~~~f~ 189 (1017)
+.+.+++. +.++++|||||+.--. .+++.. .++-.++..| ..-+-.++|.-++.+.+.++|.
T Consensus 207 -~~~~~l~~-------l~~~dlLiIDDiG~e~-~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 207 -SVKEKIDA-------VKEAPVLMLDDIGAEQ-MSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 270 (306)
T ss_pred -cHHHHHHH-------hcCCCEEEEecCCCcc-ccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence 11122221 2378999999998322 223322 3444444333 2223445555567777777774
No 303
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.71 E-value=0.17 Score=57.37 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=25.3
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHHHhcCC-CcEEEe
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFLLAENM-EPILCT 74 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~lle~~~-~~Iivt 74 (1017)
+..+.+++|+|+|||||||.+-.++-.... .+++++
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i 177 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI 177 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE
Confidence 457889999999999999988555433222 245544
No 304
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.71 E-value=0.25 Score=59.09 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCcHhHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ 62 (1017)
+.++|.||+|+|||+++-.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai 168 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAI 168 (450)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45899999999999765443
No 305
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=94.67 E-value=0.04 Score=65.41 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHcC-CcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHH
Q 001758 27 PVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVA 89 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~-~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva 89 (1017)
-+.+.|.+++....++ ...+|.||+|+|||+.+..++... ...+|+|+.|+.+++..+.+|+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3567899999988877 678999999999995554444332 22589999999999888877754
No 306
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.62 E-value=0.082 Score=56.28 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=25.6
Q ss_pred HHHHHHHHc--CCcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 33 EKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 33 ~eil~ai~~--~~~vII~apTGSGKTtqip~~lle~ 66 (1017)
.++.+.+.. ++.++|.||-|+|||+.+-.++-..
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 344555554 4899999999999999877776654
No 307
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.61 E-value=0.25 Score=60.72 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=25.0
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.++.+|||||+|. ++.+-...++|.+-.-.+...+|+.+
T Consensus 131 a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 4899999999994 33344455566554444556666644
No 308
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.59 E-value=0.26 Score=56.99 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCCchHHHHHHHHHHHc-------CCcEEEEcCCCCcHhHHHHHHH
Q 001758 25 SLPVMSLREKIVEKVLE-------NRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~-------~~~vII~apTGSGKTtqip~~l 63 (1017)
.+|-...|.+.+..... ...++|.||+|+|||+.+-.++
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHH
Confidence 57777666654444321 2689999999999998765554
No 309
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.52 E-value=0.24 Score=54.86 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=30.0
Q ss_pred CCCchHHHHHHHHHHH--cCCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 25 SLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~--~~~~vII~apTGSGKTtqip~~lle 65 (1017)
+|-..+.|.+.+..+. .+..++|+|+|||||||.+-.++..
T Consensus 61 ~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 61 KLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 4556677777776554 3457999999999999988665543
No 310
>PRK10867 signal recognition particle protein; Provisional
Probab=94.42 E-value=0.19 Score=59.31 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=67.6
Q ss_pred CcEEEEcCCCCcHhHHHHHHHH---hc-CCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFLL---AE-NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ll---e~-~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Ii 117 (1017)
.+++++|++|+||||.+..+.. .. +.+ .++-+-++|.+|....+.+++..+.++ +.... .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~~~~------~---- 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FPSGD------G---- 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----EecCC------C----
Confidence 4789999999999987666543 33 333 355667788877655555566544321 11000 0
Q ss_pred EECHHHHHH-HHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-cCCCceEEEEeecc
Q 001758 118 FKTAGVLLD-EMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATA 179 (1017)
Q Consensus 118 v~T~g~Ll~-~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-~~~~lklIlmSATl 179 (1017)
..|.-+.. .+... ...++++||||=+= |....+-+...+..+.. ..|+--+++++|+.
T Consensus 166 -~dp~~i~~~a~~~a--~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 -QDPVDIAKAALEEA--KENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred -CCHHHHHHHHHHHH--HhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 12333332 22211 11279999999997 44433444444444333 35666688888886
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.42 E-value=0.21 Score=51.31 Aligned_cols=120 Identities=17% Similarity=0.287 Sum_probs=59.5
Q ss_pred cEEEEcCCCCcHhHHHHHHHHh---cCCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEEE
Q 001758 44 VTLIVGETGCGKSSQVPQFLLA---ENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~lle---~~~~~-IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv~ 119 (1017)
++++.|++|+||||....+... .+.+. ++-+.+++..........+...+..+ . ... .. .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~------~-~~~----~~-----~ 65 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPV------F-EEG----EG-----K 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEE------E-ecC----CC-----C
Confidence 5789999999999887665433 33322 23344555444333333333222111 0 000 00 0
Q ss_pred CHHHHH-HHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc-CCCceEEEEeeccChH
Q 001758 120 TAGVLL-DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADIT 182 (1017)
Q Consensus 120 T~g~Ll-~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~-~~~lklIlmSATld~~ 182 (1017)
.+..++ +.+... ...++++||||...-...+.+. +..++.+... .++.-+++++|....+
T Consensus 66 ~~~~~~~~~~~~~--~~~~~d~viiDt~g~~~~~~~~-l~~l~~l~~~~~~~~~~lVv~~~~~~~ 127 (173)
T cd03115 66 DPVSIAKRAIEHA--REENFDVVIVDTAGRLQIDENL-MEELKKIKRVVKPDEVLLVVDAMTGQD 127 (173)
T ss_pred CHHHHHHHHHHHH--HhCCCCEEEEECcccchhhHHH-HHHHHHHHhhcCCCeEEEEEECCCChH
Confidence 122222 222211 1127899999999943333333 3333444332 4677788888875433
No 312
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.41 E-value=0.068 Score=56.98 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCcHhHHH
Q 001758 43 RVTLIVGETGCGKSSQV 59 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqi 59 (1017)
..+|+.||+|+||||..
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 37999999999999854
No 313
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.37 E-value=0.18 Score=70.03 Aligned_cols=122 Identities=15% Similarity=0.211 Sum_probs=74.4
Q ss_pred CCchHHHHHHHHHHHc--CCcEEEEcCCCCcHhHHHH---HH---HHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 26 LPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVP---QF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~--~~~vII~apTGSGKTtqip---~~---lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
..+++-|.+++..+.. ++.++|.|..|+||||++- .. +++.....|+.+.|+--+|..+.+ .|...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~-----~g~~a- 1091 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS-----AGVQA- 1091 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh-----cCCch-
Confidence 5689999999999875 4789999999999998882 22 233333467777887666655532 12110
Q ss_pred CeeeEeeccccccCCCCcEEEECHHHHHHHH--HhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEM--RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 98 ~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l--~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
.|-..|+... ..........++|||||+= ++++..+..+++.+. ....|+|++
T Consensus 1092 ---------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~vlv 1146 (1960)
T TIGR02760 1092 ---------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRAVSL 1146 (1960)
T ss_pred ---------------------HhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEEEEe
Confidence 1222222110 0000113367899999997 566655555555443 345688887
Q ss_pred eec
Q 001758 176 SAT 178 (1017)
Q Consensus 176 SAT 178 (1017)
.=+
T Consensus 1147 GD~ 1149 (1960)
T TIGR02760 1147 GDI 1149 (1960)
T ss_pred CCh
Confidence 654
No 314
>PHA02533 17 large terminase protein; Provisional
Probab=94.36 E-value=0.75 Score=55.94 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=89.4
Q ss_pred CCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHH----hcCCCcEEEeccHHHHHHHHHHHHHhhcCC-c-cC
Q 001758 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNC-E-LG 97 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~ll----e~~~~~IivtqPrrlaa~s~a~rva~e~~~-~-lg 97 (1017)
..+++.+.|.+++..+..++-.++.-+=..|||+.+..+++ ......++++.|.+-.|..+.++++..... + +-
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 35889999999999987778889999999999987765433 223347888899888888877777643211 0 00
Q ss_pred CeeeEee--ccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEE
Q 001758 98 GEVGYHI--GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 98 ~~VGy~v--~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlm 175 (1017)
. .+... ...-....+..|.+.|.+- +...-.+++++||||+|...-..+++.. +...+......++++.
T Consensus 136 ~-~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~~~e~~~a-i~p~lasg~~~r~iii 206 (534)
T PHA02533 136 Q-PGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPNFIDFWLA-IQPVISSGRSSKIIIT 206 (534)
T ss_pred h-cceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCCHHHHHHH-HHHHHHcCCCceEEEE
Confidence 0 01000 0000112345665555321 1111226788999999953221233333 3333444344567666
Q ss_pred eeccChHHHHHHHh
Q 001758 176 SATADITKYRDYFR 189 (1017)
Q Consensus 176 SATld~~~~~~~f~ 189 (1017)
|..-....+-+.+.
T Consensus 207 STp~G~n~fye~~~ 220 (534)
T PHA02533 207 STPNGLNHFYDIWT 220 (534)
T ss_pred ECCCchhhHHHHHH
Confidence 66643233444443
No 315
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.34 E-value=0.27 Score=65.95 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=73.5
Q ss_pred CCchHHHHHHHHHHHc--CCcEEEEcCCCCcHhHHHHHHH---H---hcCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 26 LPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL---L---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~--~~~vII~apTGSGKTtqip~~l---l---e~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
..+++-|.+++..+.. +++++|.|..|+||||++-.++ . +.....|+.+.|+--+|..+.+ .|.. .
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~-A 907 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVD-A 907 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCch-H
Confidence 3679999999999984 4899999999999998853332 1 2223357777787666655432 1211 0
Q ss_pred CeeeEeeccccccCCCCcEEEECHHHHHHHH----HhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEE
Q 001758 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEM----RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1017)
Q Consensus 98 ~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l----~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklI 173 (1017)
.|-..||... ..........++|||||+= +++...+..+++.+. ....|+|
T Consensus 908 ---------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~--~~garvV 962 (1623)
T PRK14712 908 ---------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAV 962 (1623)
T ss_pred ---------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--hCCCEEE
Confidence 1111222110 0111112357999999997 566555555555432 2457888
Q ss_pred EEeec
Q 001758 174 LMSAT 178 (1017)
Q Consensus 174 lmSAT 178 (1017)
++.=+
T Consensus 963 LVGD~ 967 (1623)
T PRK14712 963 ASGDT 967 (1623)
T ss_pred EEcch
Confidence 88766
No 316
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.33 E-value=0.31 Score=57.33 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCcHhHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ 62 (1017)
..++|.|++|+|||+++-.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai 156 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAI 156 (405)
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 35899999999999765433
No 317
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.29 E-value=0.38 Score=58.75 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCcHhHHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l 63 (1017)
+.++|.|++|+|||.++-.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa 335 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIG 335 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 358999999999997654443
No 318
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.27 E-value=0.14 Score=65.03 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=25.2
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.++.++||||+|. +..+-...+||.+-.-.....+|+.+
T Consensus 119 ~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3899999999994 34455555666555444455555544
No 319
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.20 E-value=0.28 Score=59.65 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=24.6
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.++.++||||+|. +..+-...++|.+-...+...+|+.+
T Consensus 118 ~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 4789999999994 33334455666655444455555544
No 320
>CHL00181 cbbX CbbX; Provisional
Probab=94.18 E-value=0.2 Score=56.11 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCcHhHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ 62 (1017)
-++++.||+|+|||+.+-.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999755443
No 321
>PRK10436 hypothetical protein; Provisional
Probab=94.17 E-value=0.15 Score=60.71 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=30.8
Q ss_pred CCCCchHHHHHHHHHHH--cCCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~ai~--~~~~vII~apTGSGKTtqip~~lle 65 (1017)
..|-+.+.+.+.+..+. .+..++|+|||||||||.+-.++.+
T Consensus 198 ~~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 198 ETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred HHcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHh
Confidence 35667777777776653 5568999999999999877555444
No 322
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=94.17 E-value=0.018 Score=63.75 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=52.9
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHhcCCC---cEE---EeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCC
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLAENME---PIL---CTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle~~~~---~Ii---vtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t 114 (1017)
.+.-+|+.|||||||||.+.-|-++...+ .+. =.+-.|+++.-+.++....+...+...-.|.-+|++ .
T Consensus 272 ~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y~HWadrFEr-----l 346 (514)
T KOG2373|consen 272 PGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSYKHWADRFER-----L 346 (514)
T ss_pred CCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhhhHHHHHHhc-----c
Confidence 34579999999999999888887765332 222 235566665544443222111111111112222322 2
Q ss_pred cEEEECH------HHHHHHHHhcCCCccCceEEEEeccc
Q 001758 115 KIVFKTA------GVLLDEMRDRGLNALKYKVIILDEVH 147 (1017)
Q Consensus 115 ~Iiv~T~------g~Ll~~l~~~~l~l~~~~~IIIDEaH 147 (1017)
...+||- +..+..+... ....++.|||||..+
T Consensus 347 plyfmtfhgqq~~~~vi~~i~ha-~yV~di~HViIDNLQ 384 (514)
T KOG2373|consen 347 PLYFMTFHGQQFMEKVINEIAHA-IYVEDIQHVIIDNLQ 384 (514)
T ss_pred chHhhhhcccchHHHHHHHHHHH-HHHHhhhhhhhhhHH
Confidence 3445552 2333444432 123378889998876
No 323
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.13 E-value=0.26 Score=55.76 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC
Q 001758 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME 69 (1017)
Q Consensus 30 ~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~ 69 (1017)
+.-..++..+..++.+++.|++|+|||+.+-++....+..
T Consensus 52 ~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 52 ATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 3344577778888999999999999999887777666654
No 324
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.12 E-value=0.16 Score=59.69 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 30 ~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~l 63 (1017)
...+.++.++..++++++.|++|+|||+++-.+.
T Consensus 182 ~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 182 TTIETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 3456778888899999999999999998775544
No 325
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.12 E-value=0.45 Score=59.09 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=26.2
Q ss_pred HHHHHHHHH---cCCcEEEEcCCCCcHhHHHHHHHH
Q 001758 32 REKIVEKVL---ENRVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 32 Q~eil~ai~---~~~~vII~apTGSGKTtqip~~ll 64 (1017)
+..++..+. ..+.++|++|-|+||||.+.++..
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH
Confidence 344555554 558999999999999999999973
No 326
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.11 E-value=0.35 Score=54.75 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=21.0
Q ss_pred HHHHHHHHcCC---cEEEEcCCCCcHhHHHHHHHHh
Q 001758 33 EKIVEKVLENR---VTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 33 ~eil~ai~~~~---~vII~apTGSGKTtqip~~lle 65 (1017)
..+...+.+++ .+++.||+|+|||+.+-.+..+
T Consensus 31 ~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 31 ETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 34444445553 4555899999999876555433
No 327
>PRK06620 hypothetical protein; Validated
Probab=94.06 E-value=0.17 Score=54.24 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCcHhHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQ 61 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~ 61 (1017)
+.+++.||+|||||+++-.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999986653
No 328
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.18 Score=59.02 Aligned_cols=103 Identities=18% Similarity=0.327 Sum_probs=65.8
Q ss_pred cEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEEECHHH
Q 001758 44 VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGV 123 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~ 123 (1017)
.+++.||.|||||++..++.+.....-|=++.|....-.+-..+++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~--------------------------------- 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAH--------------------------------- 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHH---------------------------------
Confidence 68999999999999999999888877777777765432222222211
Q ss_pred HHHHHHhcCCCccCceEEEEeccccccccc--------cHHHHHHHHHHhcCCC--ceEEEEeeccChH
Q 001758 124 LLDEMRDRGLNALKYKVIILDEVHERSVES--------DLVLVCVKQLLLKKND--LRVVLMSATADIT 182 (1017)
Q Consensus 124 Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~--------d~ll~~lk~ll~~~~~--lklIlmSATld~~ 182 (1017)
+.+.+.+. .-+..++||||++. |.++- ..++..|+.++++.|. -|++++.-|-..+
T Consensus 587 i~k~F~DA--YkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~ 652 (744)
T KOG0741|consen 587 IKKIFEDA--YKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE 652 (744)
T ss_pred HHHHHHHh--hcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH
Confidence 11111111 12367899999997 65543 3456667777766554 3777777774433
No 329
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.99 E-value=0.23 Score=60.81 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=24.8
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.++.++||||+|. +..+-...++|.+-.-.+...+|+.+
T Consensus 117 ~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 4899999999993 44555556666555434445555544
No 330
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.94 E-value=0.4 Score=56.57 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=67.3
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHh----cCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLA----ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle----~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Ii 117 (1017)
.+++++|++|+||||.+..+... .+.+ .++-+-++|.+|....+.++...+.++- .... .
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~-----~~~~----~------ 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF-----ALGK----G------ 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE-----ecCC----C------
Confidence 37899999999999887666543 2332 3555667777776666666654443211 0000 0
Q ss_pred EECHHHHH-HHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHh-cCCCceEEEEeecc
Q 001758 118 FKTAGVLL-DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATA 179 (1017)
Q Consensus 118 v~T~g~Ll-~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~-~~~~lklIlmSATl 179 (1017)
..|.-+. +.+..- ...++++||||=+- |....+-++..++.+.. ..++--+++++||.
T Consensus 165 -~~P~~i~~~al~~~--~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 -QSPVEIARRALEYA--KENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred -CCHHHHHHHHHHHH--HhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 0122222 222110 11278999999998 55444445554544433 24666788888885
No 331
>PTZ00293 thymidine kinase; Provisional
Probab=93.84 E-value=0.12 Score=54.75 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEecc
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQP 76 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle~--~~~~IivtqP 76 (1017)
.|+..++.||-+||||+.+.+.+... ...+++++-|
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp 40 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKY 40 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEe
Confidence 35678999999999999887766432 3346666666
No 332
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.82 E-value=0.051 Score=58.41 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHhHHHHHHHHhc
Q 001758 45 TLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 45 vII~apTGSGKTtqip~~lle~ 66 (1017)
++|.|+.|||||+.+...+.+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4899999999999888887765
No 333
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.21 Score=61.51 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=23.7
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.++.++||||+|. +..+-...++|.+-.-.....+|+.+
T Consensus 123 g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 3799999999993 44444555555544333344555433
No 334
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.34 Score=58.06 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=19.8
Q ss_pred HHHHcCC---cEEEEcCCCCcHhHHHHHHHH
Q 001758 37 EKVLENR---VTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 37 ~ai~~~~---~vII~apTGSGKTtqip~~ll 64 (1017)
.++.+++ .+++.||+|+||||.+-.+..
T Consensus 28 ~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 28 NALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344554 369999999999987655543
No 335
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.79 E-value=0.2 Score=55.98 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCcHhHHH
Q 001758 43 RVTLIVGETGCGKSSQV 59 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqi 59 (1017)
..+++.||+|+|||+..
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 37999999999999755
No 336
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.77 E-value=0.43 Score=64.88 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=74.2
Q ss_pred CCchHHHHHHHHHHHc--CCcEEEEcCCCCcHhHHHHHHH--Hh----cCCCcEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758 26 LPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL--LA----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~--~~~vII~apTGSGKTtqip~~l--le----~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg 97 (1017)
..+.+-|.+++..+.. ++.++|.|..|+||||++-..+ ++ .....|+.+.|+--+|..+. + .|..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e-~Gi~-- 1038 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----S-AGVD-- 1038 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----h-cCcc--
Confidence 4689999999999886 4799999999999998875443 21 12235776777666554332 2 2211
Q ss_pred CeeeEeeccccccCCCCcEEEECHHHHHHHHH----hcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEE
Q 001758 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMR----DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1017)
Q Consensus 98 ~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~----~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklI 173 (1017)
-.|-..|+.... .........++|||||+= +++...+..+++.+. ....|+|
T Consensus 1039 --------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~--~~garvV 1094 (1747)
T PRK13709 1039 --------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAV 1094 (1747)
T ss_pred --------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--cCCCEEE
Confidence 112223322110 011112256899999997 666666666665543 2357888
Q ss_pred EEeec
Q 001758 174 LMSAT 178 (1017)
Q Consensus 174 lmSAT 178 (1017)
++.=+
T Consensus 1095 LVGD~ 1099 (1747)
T PRK13709 1095 SSGDT 1099 (1747)
T ss_pred Eecch
Confidence 87655
No 337
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.77 E-value=0.075 Score=58.84 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=26.9
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHHHhcCC--CcEEEec
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQ 75 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~lle~~~--~~Iivtq 75 (1017)
++.+.+++|+|+|||||||++-.++..... .+|+++.
T Consensus 124 v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred cccceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence 356799999999999999998766654332 3555544
No 338
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.75 E-value=0.95 Score=50.76 Aligned_cols=126 Identities=20% Similarity=0.249 Sum_probs=70.7
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHh--cCCCc-EEE-----eccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCC
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLA--ENMEP-ILC-----TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSE 112 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle--~~~~~-Iiv-----tqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~ 112 (1017)
+...+++.||-|||||+.+--.+.+ ..... ++| .+.-++|...++..++.++... +..+|- +..
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs---fte---- 119 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS---FTE---- 119 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc---cch----
Confidence 4578999999999999777666665 22222 211 2446777778888777766532 121220 100
Q ss_pred CCcEEEECHHHHHHHHHhcCCCccCceEEEEecccccc--ccccHHHHHHHHHHhcCCCceEEEEeeccCh
Q 001758 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERS--VESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (1017)
Q Consensus 113 ~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~--~~~d~ll~~lk~ll~~~~~lklIlmSATld~ 181 (1017)
+-..|+..+..+.-....--++|+||++--. .+.-.+-.++......+..+-||++|--+|.
T Consensus 120 -------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 120 -------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred -------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 1234555555443222223456778887211 1112333344444455677888888888763
No 339
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.73 E-value=0.43 Score=49.68 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=21.9
Q ss_pred HHHHHHHcC---CcEEEEcCCCCcHhHHHHHHH
Q 001758 34 KIVEKVLEN---RVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 34 eil~ai~~~---~~vII~apTGSGKTtqip~~l 63 (1017)
.+...+.++ +.+++.||+|+|||+.+-.+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~ 35 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALA 35 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345566665 458999999999997665543
No 340
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.72 E-value=0.12 Score=64.25 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=69.7
Q ss_pred CCCchHHHHHHHHH-HHcCCcEEEEcCCCCcHhHHHHHHH--HhcCCCcEEEeccHHHHHHHHHHHHHhhcC--CccCCe
Q 001758 25 SLPVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRN--CELGGE 99 (1017)
Q Consensus 25 ~LPi~~~Q~eil~a-i~~~~~vII~apTGSGKTtqip~~l--le~~~~~IivtqPrrlaa~s~a~rva~e~~--~~lg~~ 99 (1017)
.+-+..-|.+++.. +....-.+|.|=+|+||||.+..++ |-...++|++|.-+-.|+..+-.++....- ..+|..
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~ 746 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSE 746 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCc
Confidence 45566667666655 4566788999999999998766553 334446889998888887777666654321 122321
Q ss_pred eeE--eeccc--------------cccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccc
Q 001758 100 VGY--HIGHS--------------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (1017)
Q Consensus 100 VGy--~v~~~--------------~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaH 147 (1017)
-.. .+..- ...-+.+.|+.+|==-+-.-+ +....+++.|||||-
T Consensus 747 ~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEAS 806 (1100)
T KOG1805|consen 747 EKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEAS 806 (1100)
T ss_pred cccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEcccc
Confidence 110 01000 011345677777721111111 122379999999997
No 341
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.70 E-value=0.25 Score=50.76 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=17.5
Q ss_pred cEEEEcCCCCcHhHHHHHHHHh
Q 001758 44 VTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~lle 65 (1017)
+++|+|+.|+||||.+-.++-.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 4799999999999998776643
No 342
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.66 E-value=0.37 Score=61.95 Aligned_cols=117 Identities=24% Similarity=0.383 Sum_probs=58.0
Q ss_pred cEEEEcCCCCcHhHHHH---HHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEEEC
Q 001758 44 VTLIVGETGCGKSSQVP---QFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKT 120 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip---~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv~T 120 (1017)
++++.||||+|||...- ..+. .+...++...- .--+-...++...|.+.| .|||. .
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~-~~~~~~~~~dm---se~~~~~~~~~l~g~~~g-yvg~~----------------~ 656 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLY-GGEQNLITINM---SEFQEAHTVSRLKGSPPG-YVGYG----------------E 656 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh-CCCcceEEEeH---HHhhhhhhhccccCCCCC-ccccc----------------c
Confidence 58999999999995443 3332 22234444321 111112223333333322 24432 2
Q ss_pred HHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcC---C-------CceEEEEeeccChHHHHHHH
Q 001758 121 AGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK---N-------DLRVVLMSATADITKYRDYF 188 (1017)
Q Consensus 121 ~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~---~-------~lklIlmSATld~~~~~~~f 188 (1017)
.|.|...+... .+++|+|||++. .+.++...++..+-..+ . .-.+|+||+.+..+.+.+.+
T Consensus 657 ~g~L~~~v~~~-----p~svvllDEiek--a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRRK-----PYSVVLLDEVEK--AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHhC-----CCcEEEEechhh--cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 34555555543 678999999983 33344333332221111 0 12577777777655554433
No 343
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.65 E-value=0.19 Score=60.50 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=31.6
Q ss_pred cCCCCchHHHHHHHHHHHc--CCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 23 FSSLPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~ai~~--~~~vII~apTGSGKTtqip~~lle 65 (1017)
...|-+.+.+.+.+..+.. +..++|+|||||||||.+-.++.+
T Consensus 221 l~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~ 265 (486)
T TIGR02533 221 LETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSR 265 (486)
T ss_pred HHHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhc
Confidence 3457777777777776653 347899999999999888655543
No 344
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.51 E-value=0.35 Score=55.31 Aligned_cols=35 Identities=31% Similarity=0.571 Sum_probs=23.8
Q ss_pred CceEEEEecccccc--ccccHHHHHHHHHHhcCCCceEEEEeecc
Q 001758 137 KYKVIILDEVHERS--VESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1017)
Q Consensus 137 ~~~~IIIDEaHER~--~~~d~ll~~lk~ll~~~~~lklIlmSATl 179 (1017)
+=.+++|||+| |. ...|+++..+ .+-.||+..||-
T Consensus 104 r~tiLflDEIH-RfnK~QQD~lLp~v-------E~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIH-RFNKAQQDALLPHV-------ENGTIILIGATT 140 (436)
T ss_pred CceEEEEehhh-hcChhhhhhhhhhh-------cCCeEEEEeccC
Confidence 45789999999 43 2236665544 345789999993
No 345
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.50 E-value=0.14 Score=58.13 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=30.9
Q ss_pred hHHHHHHHHH-HHcCCcEEEEcCCCCcHhHHHHHHHHhc----CCCcEEEec
Q 001758 29 MSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQ 75 (1017)
Q Consensus 29 ~~~Q~eil~a-i~~~~~vII~apTGSGKTtqip~~lle~----~~~~Iivtq 75 (1017)
.+.|.+.+.. +..+.+++|+|+|||||||.+-.++... ...+|+.+.
T Consensus 130 ~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 130 TEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 3445555544 5667899999999999999875544332 223566654
No 346
>PLN03025 replication factor C subunit; Provisional
Probab=93.46 E-value=0.43 Score=54.32 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=18.0
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHh
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle 65 (1017)
..+++.||+|+|||+.+-.+..+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999876555433
No 347
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.40 E-value=0.31 Score=57.20 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=19.2
Q ss_pred HHHHcCC---cEEEEcCCCCcHhHHHHHHH
Q 001758 37 EKVLENR---VTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 37 ~ai~~~~---~vII~apTGSGKTtqip~~l 63 (1017)
.++.+++ .+|+.||.|+||||.+-.+.
T Consensus 30 ~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 30 NSLRMGRVGHGYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred HHHHhCCcceeEEEECCCCCCHHHHHHHHH
Confidence 3344553 48899999999998665543
No 348
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.38 E-value=0.48 Score=58.10 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred HHHHHcCC---cEEEEcCCCCcHhHHHHHHH
Q 001758 36 VEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 36 l~ai~~~~---~vII~apTGSGKTtqip~~l 63 (1017)
..++.+++ .+|+.||.|+|||+..-.+.
T Consensus 29 ~~ai~~~ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 29 SRAAQENRVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred HHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 33445543 58899999999998665444
No 349
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=0.037 Score=62.91 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=47.6
Q ss_pred cCcCCCCCCCcccccccccccccc-cCCCCCCCCCCCCCC------------------------------CCcccccccc
Q 001758 721 QDKAVNGSETPGEAPLCVYFINGS-CNRGTGCPFSHSLQA------------------------------KRPACKFFYS 769 (1017)
Q Consensus 721 ~~~~~~~~~~~~~~~~C~~f~~G~-C~~G~~C~f~H~~~~------------------------------~~~~C~~f~~ 769 (1017)
|...|+..........|.|+.+|+ |.+ ++|.|.|..++ -..||-+| +
T Consensus 48 C~YRHSe~~~kr~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~~~SAq~~sV~~~p~P~l~~-~ 125 (667)
T KOG4791|consen 48 CRYRHSEIDKKRSEIPCYWENQPTGCQK-LNCGFRHNRPPLKGVLPTVPESPEEEVKASQLSAQQNSVQSNPSPQLRS-V 125 (667)
T ss_pred ccchhhHHhhhcCcccceeecCCCccCC-CccccccCCCchhhhccCCCCCcccccccccccCCCcccccCCchHHHH-h
Confidence 344444444445678899999977 988 77999993200 02379999 9
Q ss_pred cccCCCCCCCCCCCCC
Q 001758 770 LQGCRNGDSCIFSHDL 785 (1017)
Q Consensus 770 ~g~C~~G~~C~f~H~~ 785 (1017)
+|.|..||-|-|.|.+
T Consensus 126 K~~e~~~D~~s~Lh~P 141 (667)
T KOG4791|consen 126 KKVESSEDVPSPLHPP 141 (667)
T ss_pred hhhhhhccccccCCCC
Confidence 9999999999999988
No 350
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.34 E-value=0.19 Score=61.64 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=30.7
Q ss_pred CCCCchHHHHHHHHHHH--cCCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~ai~--~~~~vII~apTGSGKTtqip~~lle 65 (1017)
..|-+.+.+.+.+..+. .+..++|+|||||||||.+-..+..
T Consensus 296 ~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~ 339 (564)
T TIGR02538 296 DKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNI 339 (564)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 45777777776766653 4568999999999999887554433
No 351
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.34 E-value=0.064 Score=60.09 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHH----HHHhcCCCcEEEecc
Q 001758 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ----FLLAENMEPILCTQP 76 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~----~lle~~~~~IivtqP 76 (1017)
.|.++-|..-+++|.++..+.-.||-|+|||++..- .+.....++|+.+-|
T Consensus 127 ~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 127 IPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred EecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 789999999999999999999999999999954332 233333458999999
No 352
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.24 E-value=0.24 Score=64.02 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=90.4
Q ss_pred CEEEEeCCHHHHHHHHHHhcCCCCCcEEEEecCCCCHHHHHHHHHhccCC--c-EEEEEcCcccccccCCCeeEEEeCCc
Q 001758 278 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH--R-KVILATNIAESSVTIPKVAYVIDSCR 354 (1017)
Q Consensus 278 ~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g--r-kVIVATniaetGIdIP~V~~VId~G~ 354 (1017)
++|||.+-.....-+...+.... +....++|+++..+|...++.|..+ . -.+++|-.++.|+++-..+.||.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~--~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~--- 787 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG--IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL--- 787 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC--CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE---
Confidence 79999999999988888887544 6788999999999999999999874 3 67788889999999999999998
Q ss_pred cceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhc
Q 001758 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1017)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1017)
||+..+.... .+|..|+-|.|+..+=.+|++.+++..+
T Consensus 788 -----~d~~wnp~~~-------~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 788 -----FDPWWNPAVE-------LQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred -----eccccChHHH-------HHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 8887665444 4556666777777888899999987643
No 353
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.18 E-value=0.16 Score=57.96 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHcCCcEEEEcCCCCcHhHHHHHHHHhcCC-CcEEEe
Q 001758 38 KVLENRVTLIVGETGCGKSSQVPQFLLAENM-EPILCT 74 (1017)
Q Consensus 38 ai~~~~~vII~apTGSGKTtqip~~lle~~~-~~Iivt 74 (1017)
++..+.+++|+|+|||||||.+-.++..-.. .+|+.+
T Consensus 156 ~v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti 193 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFTNAALREIPAIERLITV 193 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe
Confidence 3557899999999999999988554433332 355554
No 354
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.15 E-value=0.033 Score=56.51 Aligned_cols=28 Identities=25% Similarity=0.632 Sum_probs=24.0
Q ss_pred Cccccccccccc-ccccCCCCCCCCCCCC
Q 001758 730 TPGEAPLCVYFI-NGSCNRGTGCPFSHSL 757 (1017)
Q Consensus 730 ~~~~~~~C~~f~-~G~C~~G~~C~f~H~~ 757 (1017)
-..++.+|+-|. +|.|-+||+|+|+|+.
T Consensus 137 iD~qpdVCKdyk~TGYCGYGDsCKflH~R 165 (259)
T COG5152 137 IDTQPDVCKDYKETGYCGYGDSCKFLHDR 165 (259)
T ss_pred eecCcccccchhhcccccCCchhhhhhhh
Confidence 355788899998 6999999999999986
No 355
>PRK04195 replication factor C large subunit; Provisional
Probab=93.09 E-value=0.64 Score=56.04 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhcCC
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAENM 68 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~~~ 68 (1017)
.+.++|.||+|+|||+.+-.++.+.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~ 65 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW 65 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 478999999999999987666655543
No 356
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.06 E-value=0.75 Score=51.89 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCcHhHHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l 63 (1017)
..+++.||+|+|||+.+-.+.
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 368999999999998765544
No 357
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.01 E-value=0.31 Score=49.75 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=27.7
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
..+.++|||||| .++.+..-+++|.+-.-..+..+|++|-.
T Consensus 101 ~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 379999999999 45666677777766544455666666544
No 358
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.98 E-value=0.28 Score=60.54 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=19.9
Q ss_pred HHHHHcCC---cEEEEcCCCCcHhHHHHHHH
Q 001758 36 VEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 36 l~ai~~~~---~vII~apTGSGKTtqip~~l 63 (1017)
..++..++ .+|+.||.|+|||+.+-.+.
T Consensus 29 ~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 29 RNAIAEGRVAHAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred HHHHHhCCCceEEEEECCCCCCHHHHHHHHH
Confidence 33445554 35999999999998765554
No 359
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.98 E-value=0.69 Score=53.06 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=30.4
Q ss_pred HHHHHHHHHH-HcCCcEEEEcCCCCcHhHHHHHHHHhcC-CCcEEEec
Q 001758 30 SLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAEN-MEPILCTQ 75 (1017)
Q Consensus 30 ~~Q~eil~ai-~~~~~vII~apTGSGKTtqip~~lle~~-~~~Iivtq 75 (1017)
+.+.+++..+ ..+.+++|+|+|||||||.+-.++-... ..+++++.
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iE 212 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVE 212 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEEC
Confidence 4555666654 4568999999999999998765543322 23455443
No 360
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=92.94 E-value=0.41 Score=60.53 Aligned_cols=116 Identities=12% Similarity=0.170 Sum_probs=67.7
Q ss_pred chHHHHHHHHHHH----cCCcEEEEcCCCCcHhHHHHHHHH-----hcCCC-cEEEeccHHHHHHHH-HHHHHhhcCCcc
Q 001758 28 VMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFLL-----AENME-PILCTQPRRFAVVAV-AKMVAKGRNCEL 96 (1017)
Q Consensus 28 i~~~Q~eil~ai~----~~~~vII~apTGSGKTtqip~~ll-----e~~~~-~IivtqPrrlaa~s~-a~rva~e~~~~l 96 (1017)
++.||..-++.+. +|=|-|+.-+-|-|||.|...++. +.+++ .+||+++..++-=.+ .+|++- |.++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP--glKI 693 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP--GLKI 693 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC--cceE
Confidence 5788888888764 677899999999999977666553 34455 455555543332111 122221 1111
Q ss_pred CCeeeEe-e----ccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccc
Q 001758 97 GGEVGYH-I----GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (1017)
Q Consensus 97 g~~VGy~-v----~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaH 147 (1017)
-...|-. - |......+.-+|.|+++..+++-+.. +.-.++.++|+||||
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaq 747 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQ 747 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhh
Confidence 1111211 0 11111233457888888888776653 122388999999999
No 361
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.89 E-value=0.24 Score=51.18 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHhHHHHHHHHhc
Q 001758 44 VTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~lle~ 66 (1017)
.++|.||+|+|||+...+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999998888887654
No 362
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.85 E-value=0.19 Score=55.73 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=36.6
Q ss_pred HHHHHHHHc----CCcEEEEcCCCCcHhHHHHHHHHh----cCCCc-EEEeccHHHHHHHHHHHHHhhcC
Q 001758 33 EKIVEKVLE----NRVTLIVGETGCGKSSQVPQFLLA----ENMEP-ILCTQPRRFAVVAVAKMVAKGRN 93 (1017)
Q Consensus 33 ~eil~ai~~----~~~vII~apTGSGKTtqip~~lle----~~~~~-IivtqPrrlaa~s~a~rva~e~~ 93 (1017)
+++.+.+.. .+++.|.|..|+|||+++.+++.+ ..... +.+...+.....++.+.+...++
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 455666665 478999999999999988887754 12222 33333333222444455555444
No 363
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.77 E-value=1.2 Score=54.36 Aligned_cols=138 Identities=19% Similarity=0.228 Sum_probs=84.3
Q ss_pred CCcEEEEcCCCCcHhHHHH-HHHHh---cCCCcEEEeccHHHHHHHHHHHHHhhcCCcc-CCeee------Eeecccccc
Q 001758 42 NRVTLIVGETGCGKSSQVP-QFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCEL-GGEVG------YHIGHSKHL 110 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip-~~lle---~~~~~IivtqPrrlaa~s~a~rva~e~~~~l-g~~VG------y~v~~~~~~ 110 (1017)
.+-.++..|==.|||..+. .+.+. ....+|+++.|++-.+..+.+++...+.... +..+. ..+.+.+
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~n-- 331 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPD-- 331 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecC--
Confidence 4678999999999996443 22211 2334899999999999888888776332111 11111 1111211
Q ss_pred CCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccChHHHHHHHhh
Q 001758 111 SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRD 190 (1017)
Q Consensus 111 ~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld~~~~~~~f~~ 190 (1017)
.....|.|.+. + ..+...-..++++|||||++ +..+.+..++--+. .. +.++|.+|.|-+.+.-..|+.+
T Consensus 332 G~kstI~FaSa----r--ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~-~~-n~k~I~ISS~Ns~~~sTSFL~n 401 (738)
T PHA03368 332 GSRSTIVFASS----H--NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLN-QT-NCKIIFVSSTNTGKASTSFLYN 401 (738)
T ss_pred CCccEEEEEec----c--CCCCccCCcccEEEEechhh--CCHHHHHHHHHHHh-cc-CccEEEEecCCCCccchHHHHh
Confidence 11236666643 0 11222233899999999995 55566666663333 22 8899999999877666677765
Q ss_pred c
Q 001758 191 L 191 (1017)
Q Consensus 191 ~ 191 (1017)
+
T Consensus 402 L 402 (738)
T PHA03368 402 L 402 (738)
T ss_pred h
Confidence 5
No 364
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.76 E-value=0.62 Score=58.08 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=20.0
Q ss_pred HHHHHHcCC---cEEEEcCCCCcHhHHHHHHH
Q 001758 35 IVEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 35 il~ai~~~~---~vII~apTGSGKTtqip~~l 63 (1017)
+..++..++ ..++.||.|+|||+.+-.+.
T Consensus 30 L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 30 LKNIIKSNKISHAYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 344455553 46899999999997664443
No 365
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.70 E-value=0.21 Score=56.25 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHcCC-cEEEEcCCCCcHhHHHHHHHHhcCC-CcEEEeccHH
Q 001758 29 MSLREKIVEKVLENR-VTLIVGETGCGKSSQVPQFLLAENM-EPILCTQPRR 78 (1017)
Q Consensus 29 ~~~Q~eil~ai~~~~-~vII~apTGSGKTtqip~~lle~~~-~~IivtqPrr 78 (1017)
.+-+.+.+..+...+ +++|+|.|||||||.+=.++..-.. .+|++..-..
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDta 210 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTA 210 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehh
Confidence 345667776665554 9999999999999987666554333 3788876643
No 366
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.66 E-value=0.49 Score=55.87 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCcHhHHHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ll 64 (1017)
..+++.||+|+||||.+-.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999987655443
No 367
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.64 E-value=0.69 Score=56.02 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=25.5
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
..+.++||||||. +..+....++|.+-.-.+...+|+.+
T Consensus 116 ~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 4899999999993 44555556666655444455655544
No 368
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.62 E-value=0.2 Score=61.91 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=28.6
Q ss_pred CCCCcEEEECHHHHHHHHHhcCCCcc-CceEEEEecccc
Q 001758 111 SERSKIVFKTAGVLLDEMRDRGLNAL-KYKVIILDEVHE 148 (1017)
Q Consensus 111 ~~~t~Iiv~T~g~Ll~~l~~~~l~l~-~~~~IIIDEaHE 148 (1017)
.++++|+||-+..|++-...+...+. .=++||+||||.
T Consensus 220 ~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHN 258 (945)
T KOG1132|consen 220 KEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHN 258 (945)
T ss_pred cccCcEEEechhhhcCHhhhccccccccccEEEEecccc
Confidence 45789999999999876554432222 678999999993
No 369
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.60 E-value=0.13 Score=56.69 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=27.1
Q ss_pred CcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 22 ~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle 65 (1017)
+.++|-+-+.-.++++ ....-++|.|||||||||.+..++-.
T Consensus 107 ~~e~LglP~i~~~~~~--~~~GLILVTGpTGSGKSTTlAamId~ 148 (353)
T COG2805 107 TLEELGLPPIVRELAE--SPRGLILVTGPTGSGKSTTLAAMIDY 148 (353)
T ss_pred CHHHcCCCHHHHHHHh--CCCceEEEeCCCCCcHHHHHHHHHHH
Confidence 3344444444333322 24568999999999999888877643
No 370
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.56 E-value=0.72 Score=55.54 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=19.1
Q ss_pred HHHHHHcCC---cEEEEcCCCCcHhHHHHHHH
Q 001758 35 IVEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 35 il~ai~~~~---~vII~apTGSGKTtqip~~l 63 (1017)
+..++..++ ..++.||.|+||||..-.+.
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 28 LKNAVKLQRVSHAYIFAGPRGTGKTTIARILA 59 (486)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344444543 35789999999987654443
No 371
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=0.57 Score=57.66 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=21.4
Q ss_pred HHHHHHHcCC---cEEEEcCCCCcHhHHHHHHHH
Q 001758 34 KIVEKVLENR---VTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 34 eil~ai~~~~---~vII~apTGSGKTtqip~~ll 64 (1017)
.+..++..++ ..++.||.|+||||.+-.+..
T Consensus 27 ~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 27 TLQNAIDTGRVAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444455553 468999999999987655543
No 372
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.47 E-value=0.71 Score=51.96 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=21.6
Q ss_pred chHHHHHH-HHHHhhhcccCCCCCccccccchhh
Q 001758 451 EVVGDALD-LLDHKRALQKISPRGRYEPTFYGRL 483 (1017)
Q Consensus 451 ~~i~~Al~-~L~~lgaLd~~~~~g~~~lT~lG~~ 483 (1017)
..+...++ .|.+.|.|.. ...|+ ..|..|..
T Consensus 270 ~~~~~~~e~~Li~~~li~~-~~~g~-~~~~~~~~ 301 (305)
T TIGR00635 270 DTIEDVYEPYLLQIGFLQR-TPRGR-IATELAYE 301 (305)
T ss_pred chHHHhhhHHHHHcCCccc-CCchh-hhhHHHHH
Confidence 45667677 6999999976 44565 47777753
No 373
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.46 E-value=0.99 Score=50.07 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=23.8
Q ss_pred HHHHHHHHHc-C--CcEEEEcCCCCcHhHHHHHHHH
Q 001758 32 REKIVEKVLE-N--RVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 32 Q~eil~ai~~-~--~~vII~apTGSGKTtqip~~ll 64 (1017)
.+..+..+.+ + ++++|.|||||||||.+-.++-
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhC
Confidence 3444555543 3 6899999999999998766653
No 374
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.27 E-value=2.8 Score=47.31 Aligned_cols=130 Identities=17% Similarity=0.249 Sum_probs=78.2
Q ss_pred cEEEEcCCCCcHhHHHHHH---HHhcCCCc-EEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEEE
Q 001758 44 VTLIVGETGCGKSSQVPQF---LLAENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~---lle~~~~~-IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv~ 119 (1017)
+++++|-.|+||||.+.++ +...+.+. +.-.-+-|.+|+..-+-+++..|+.+-. .. .-...+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~-------~~-~G~DpA----- 207 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS-------GK-EGADPA----- 207 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc-------cC-CCCCcH-----
Confidence 7899999999999887665 34455442 2334566888887777777765544311 11 111111
Q ss_pred CHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhc-CCCc------eEEEEeecc--ChHHHHHHHhh
Q 001758 120 TAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDL------RVVLMSATA--DITKYRDYFRD 190 (1017)
Q Consensus 120 T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~-~~~l------klIlmSATl--d~~~~~~~f~~ 190 (1017)
.+..+.+.... ..++++|++|=|- |.-+..-|+.-|+.+.+. .++. .++++=||. |+-.-.+.|+.
T Consensus 208 --aVafDAi~~Ak--ar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~e 282 (340)
T COG0552 208 --AVAFDAIQAAK--ARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNE 282 (340)
T ss_pred --HHHHHHHHHHH--HcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHH
Confidence 23334444321 2389999999999 666666666655555432 3333 566668996 44455567765
Q ss_pred c
Q 001758 191 L 191 (1017)
Q Consensus 191 ~ 191 (1017)
.
T Consensus 283 a 283 (340)
T COG0552 283 A 283 (340)
T ss_pred h
Confidence 4
No 375
>CHL00176 ftsH cell division protein; Validated
Probab=92.25 E-value=1.5 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=18.5
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~ 66 (1017)
+.+++.||+|+|||+.+-.+..+.
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999998765554443
No 376
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.18 E-value=0.32 Score=61.22 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=40.7
Q ss_pred CCCchHHHHHHHHHHH----c-----CCcEEEEcCCCCcHh--HHHHHHHHhc-CCCcEEEeccHHHHHHHH
Q 001758 25 SLPVMSLREKIVEKVL----E-----NRVTLIVGETGCGKS--SQVPQFLLAE-NMEPILCTQPRRFAVVAV 84 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~----~-----~~~vII~apTGSGKT--tqip~~lle~-~~~~IivtqPrrlaa~s~ 84 (1017)
.+-.++-|.+.+.+|. + ++.++|.|+||+||| +++|..+... ..++|||...+..+-.|+
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL 94 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQL 94 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 4557778888776664 3 378999999999999 6677655433 234666666665554444
No 377
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.17 E-value=0.3 Score=61.72 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHH----HcCCcEEEEcCCCCcHhHHHHHHHHh----cC-CCcEEEeccHHH
Q 001758 27 PVMSLREKIVEKV----LENRVTLIVGETGCGKSSQVPQFLLA----EN-MEPILCTQPRRF 79 (1017)
Q Consensus 27 Pi~~~Q~eil~ai----~~~~~vII~apTGSGKTtqip~~lle----~~-~~~IivtqPrrl 79 (1017)
|+++.|.+.++.+ .++++.++.+|||+|||..+....+. .+ ..+|+++..+..
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThs 71 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHS 71 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccch
Confidence 5688898887775 47899999999999999544433332 22 135665544433
No 378
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.12 E-value=2.4 Score=49.28 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=83.1
Q ss_pred CcEEEEcCCCCcHhHHHHH---HHHhcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcEEE
Q 001758 43 RVTLIVGETGCGKSSQVPQ---FLLAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~---~lle~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
.+++++|=-||||||.... |+...+.+ .++.+-..|.+|...-+.+++..+.++-.. + .. .++
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~------~~--~~P---- 167 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G------TE--KDP---- 167 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C------CC--CCH----
Confidence 3688999999999987654 44554444 466777889999988888888766543221 0 00 000
Q ss_pred ECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeecc--ChHHHHHHHhh
Q 001758 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA--DITKYRDYFRD 190 (1017)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATl--d~~~~~~~f~~ 190 (1017)
.++.-+-+..-. ...+++||||=|-...++.++...+...--..+|+=-++++=|++ ++...++-|+.
T Consensus 168 --v~Iak~al~~ak--~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 168 --VEIAKAALEKAK--EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred --HHHHHHHHHHHH--HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 123333333211 227899999999954555555544444434457887888888886 66677777765
No 379
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.11 E-value=0.4 Score=59.38 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=20.5
Q ss_pred HHHHHHcC---CcEEEEcCCCCcHhHHHHHHHH
Q 001758 35 IVEKVLEN---RVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 35 il~ai~~~---~~vII~apTGSGKTtqip~~ll 64 (1017)
+..++..+ ..+++.||.|+|||+.+-.+..
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHH
Confidence 33344444 3569999999999987655543
No 380
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.03 E-value=1.1 Score=46.26 Aligned_cols=124 Identities=12% Similarity=0.071 Sum_probs=58.9
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCC--
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS-- 114 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~lle~~--~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t-- 114 (1017)
+..++.+.|.|+.||||||.+-.+.-... .+.|.+ .-..+... ...+. ..++|... +......+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~-~g~~~~~~--~~~~~--------~~i~~~~q-~~~~~~~tv~ 92 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL-DGVPVSDL--EKALS--------SLISVLNQ-RPYLFDTTLR 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE-CCEEHHHH--HHHHH--------hhEEEEcc-CCeeecccHH
Confidence 34789999999999999997765543221 234433 22112111 11111 12343311 10000000
Q ss_pred -c-EEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 115 -K-IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 115 -~-Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
. +.-.+.|...+......+ ..+.+++|+||.= ..++.+....+++.+.......-+|+.|
T Consensus 93 ~~i~~~LS~G~~qrv~laral-~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~s 154 (178)
T cd03247 93 NNLGRRFSGGERQRLALARIL-LQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHH-hcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 0 222334554444332222 2378999999998 5666655444444443333333344433
No 381
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.02 E-value=0.45 Score=47.95 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=20.2
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~l 63 (1017)
+..++.+.|.|++|+||||.+-.+.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~ 46 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIA 46 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3467899999999999998765543
No 382
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.90 E-value=0.24 Score=66.32 Aligned_cols=132 Identities=10% Similarity=0.054 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHh---cCC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeE
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---ENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle---~~~--~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
.++-|.+++. ..+++++|.|.-|||||+.+...++. .+. ..|+++.-++.||..+..|+...+...+...-..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~ 79 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNS 79 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 3577888887 36789999999999999776554432 222 3678877888888888888887554322211111
Q ss_pred eeccccccCCCCcEEEECHHHHHHHHH-hcCCCcc-CceEEEEeccccccccccHHHHHHHH
Q 001758 103 HIGHSKHLSERSKIVFKTAGVLLDEMR-DRGLNAL-KYKVIILDEVHERSVESDLVLVCVKQ 162 (1017)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~-~~~l~l~-~~~~IIIDEaHER~~~~d~ll~~lk~ 162 (1017)
. +..+....-...-|+|-..+...+. .....+. +.+.=|.||.....+..+.+..++..
T Consensus 80 ~-~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~ 140 (1232)
T TIGR02785 80 K-HLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEE 140 (1232)
T ss_pred H-HHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHH
Confidence 0 1122222334566888766654443 3221111 44556799887544444444444443
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.88 E-value=0.71 Score=46.04 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=50.3
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcE
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~lle~~--~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~I 116 (1017)
+..++.+.|.|+.||||||.+-.+.-... .+.|.+- .+ ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~-~~--------------------~~i~~~~~----------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG-ST--------------------VKIGYFEQ----------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEEC-Ce--------------------EEEEEEcc-----------
Confidence 34678999999999999987755432211 1222221 10 12444311
Q ss_pred EEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHH
Q 001758 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQL 163 (1017)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~l 163 (1017)
.+.|...+......+ ..+.+++|+||-= ..++.+....+.+.+
T Consensus 71 --lS~G~~~rv~laral-~~~p~illlDEP~-~~LD~~~~~~l~~~l 113 (144)
T cd03221 71 --LSGGEKMRLALAKLL-LENPNLLLLDEPT-NHLDLESIEALEEAL 113 (144)
T ss_pred --CCHHHHHHHHHHHHH-hcCCCEEEEeCCc-cCCCHHHHHHHHHHH
Confidence 455665554332222 2378999999998 566665554444443
No 384
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.11 Score=58.74 Aligned_cols=23 Identities=39% Similarity=0.953 Sum_probs=20.2
Q ss_pred cccccccccccCCCCCCCCCCCCC
Q 001758 762 PACKFFYSLQGCRNGDSCIFSHDL 785 (1017)
Q Consensus 762 ~~C~~f~~~g~C~~G~~C~f~H~~ 785 (1017)
.+|+|| ++|+|++|+.|+|+|..
T Consensus 9 tic~~~-~~g~c~~g~~cr~~h~~ 31 (344)
T KOG1039|consen 9 TICKYY-QKGNCKFGDLCRLSHSL 31 (344)
T ss_pred hhhhhc-ccccccccceeeeeccC
Confidence 678888 88999999999999988
No 385
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.78 E-value=0.29 Score=59.12 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=22.3
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEE
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIl 174 (1017)
.++.+|||||+|. +..+.+..+++.+-...+...+|+
T Consensus 115 ~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 115 GGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred CCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEE
Confidence 4789999999993 334445555665544333334444
No 386
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.72 E-value=0.6 Score=57.68 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 001758 605 HYLVQSSLHHVSELYEDILNAVHRFRPKFLG 635 (1017)
Q Consensus 605 ~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~ 635 (1017)
|-+++.-|++-.++-..++..+..+.+++-.
T Consensus 548 ~~~~~e~l~~~~~~l~~~~~~~~~~~~~~~~ 578 (620)
T PRK14954 548 RKFSYEELMQDAALLSKEIESFYGIPLKLQI 578 (620)
T ss_pred ccccHHHHHhHHHHHHHHHHHHhcCCceEEE
Confidence 3346677777667777777777777666543
No 387
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.71 E-value=1.1 Score=57.63 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.5
Q ss_pred cEEEEcCCCCcHhHHHH
Q 001758 44 VTLIVGETGCGKSSQVP 60 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip 60 (1017)
.++++||||+|||+.+-
T Consensus 600 ~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 600 SFLFLGPTGVGKTELCK 616 (857)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999997553
No 388
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=91.70 E-value=0.28 Score=60.49 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=40.7
Q ss_pred ccCCcEEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCC---CCCcEEE
Q 001758 324 CKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYR 396 (1017)
Q Consensus 324 f~~grkVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~---~~G~c~r 396 (1017)
|...++.|++-.++-+|.|=|+|=.+.- ..... |-.+=.|.+||.-|. ..|.-++
T Consensus 480 Fd~plRFIFS~waLrEGWDNPNVFtIck--------L~~S~----------SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 480 FDEPLRFIFSKWALREGWDNPNVFTICK--------LRSSG----------SEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cCCcceeeeehhHHhhcCCCCCeeEEEE--------ecCCC----------cchHHHHHhccceeeeeccccceec
Confidence 5566799999999999999999877763 22222 223348999999997 5676554
No 389
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.70 E-value=0.78 Score=53.23 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=20.2
Q ss_pred HHHHHHcCC---cEEEEcCCCCcHhHHHHHH
Q 001758 35 IVEKVLENR---VTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 35 il~ai~~~~---~vII~apTGSGKTtqip~~ 62 (1017)
+...+.+++ .+++.||.|+|||+.+-.+
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 444445543 7899999999999766554
No 390
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.61 E-value=0.19 Score=58.10 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=22.7
Q ss_pred HHHHHH-cCCcEEEEcCCCCcHhHHHHHHH
Q 001758 35 IVEKVL-ENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 35 il~ai~-~~~~vII~apTGSGKTtqip~~l 63 (1017)
+.+.+. .+..++|+|||||||||.+-.++
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHH
Confidence 444554 67899999999999998876554
No 391
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.55 E-value=0.39 Score=55.97 Aligned_cols=24 Identities=29% Similarity=0.229 Sum_probs=20.3
Q ss_pred HHHHcCCcEEEEcCCCCcHhHHHH
Q 001758 37 EKVLENRVTLIVGETGCGKSSQVP 60 (1017)
Q Consensus 37 ~ai~~~~~vII~apTGSGKTtqip 60 (1017)
+.+.++.|+|+.||+|+|||..+.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 556789999999999999996543
No 392
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.53 E-value=0.6 Score=57.02 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=20.0
Q ss_pred HHHHHHcC---CcEEEEcCCCCcHhHHHHHHH
Q 001758 35 IVEKVLEN---RVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 35 il~ai~~~---~~vII~apTGSGKTtqip~~l 63 (1017)
+..++..+ +-.++.||.|+|||+.+-.+.
T Consensus 28 L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 28 LVNAILNNKLTHAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 33444444 357899999999997665543
No 393
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.50 E-value=0.45 Score=55.94 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCcHhHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ 62 (1017)
.++++.||||+|||+.+-.+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~l 128 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTL 128 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 57999999999999765444
No 394
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.48 E-value=0.94 Score=46.44 Aligned_cols=122 Identities=18% Similarity=0.220 Sum_probs=58.5
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCC--
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS-- 114 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t-- 114 (1017)
+..+..+.|.||.||||||.+-.+.-.. ..+.|.+- -..+.... ..... ..+||..... .....+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~-g~~~~~~~-~~~~~--------~~i~~~~~~~-~~~~~t~~ 93 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILID-GVDLRDLD-LESLR--------KNIAYVPQDP-FLFSGTIR 93 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEEC-CEEhhhcC-HHHHH--------hhEEEEcCCc-hhccchHH
Confidence 3578999999999999999776554322 12334332 11111000 01111 1234331110 110000
Q ss_pred -cEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 115 -KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 115 -~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
.+ .+.|.-.+......+ ..+.+++|+||-= ..++......+.+.+...... +.|+++
T Consensus 94 e~l--LS~G~~~rl~la~al-~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~-~tii~~ 151 (171)
T cd03228 94 ENI--LSGGQRQRIAIARAL-LRDPPILILDEAT-SALDPETEALILEALRALAKG-KTVIVI 151 (171)
T ss_pred HHh--hCHHHHHHHHHHHHH-hcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 01 444544443332222 2378999999987 567765555555544443333 444444
No 395
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.41 E-value=1.3 Score=50.99 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=19.4
Q ss_pred HHHHHHcCC---cEEEEcCCCCcHhHHHHHH
Q 001758 35 IVEKVLENR---VTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 35 il~ai~~~~---~vII~apTGSGKTtqip~~ 62 (1017)
+...+.+++ ..++.||.|+|||+.+-.+
T Consensus 26 l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~l 56 (355)
T TIGR02397 26 LKNAIKNGRIAHAYLFSGPRGTGKTSIARIF 56 (355)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 334444543 5799999999999765444
No 396
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.39 E-value=0.6 Score=57.22 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCcHhHHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l 63 (1017)
+..+++||.|+|||+.+-.+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357889999999997665443
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.30 E-value=1.4 Score=45.61 Aligned_cols=41 Identities=7% Similarity=0.099 Sum_probs=24.7
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCC-CceEEEEee
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMSA 177 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~-~lklIlmSA 177 (1017)
.+.+++|+||.. ..++......+.+.+..... ...+|+.|-
T Consensus 115 ~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 367999999999 66676555555444433322 345555544
No 398
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.23 E-value=0.22 Score=42.21 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCcHhHHHHHH
Q 001758 42 NRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~ 62 (1017)
+.+++|.|++||||||.+=.+
T Consensus 23 g~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 358999999999999876433
No 399
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.14 E-value=0.24 Score=53.53 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=22.8
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~lle~ 66 (1017)
+.+..-||++|+|||||||.+..++-..
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~yR 151 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGYR 151 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhccc
Confidence 4566789999999999999888877543
No 400
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=2 Score=49.78 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=25.4
Q ss_pred CCCchHHHHHHHHHHH-----c--CCcEEEEcCCCCcHhHHHHH
Q 001758 25 SLPVMSLREKIVEKVL-----E--NRVTLIVGETGCGKSSQVPQ 61 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~-----~--~~~vII~apTGSGKTtqip~ 61 (1017)
.||-+.-|-+-+..+. . ..+++|.|+||+|||+.+-.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~ 61 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKF 61 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHH
Confidence 3777777665555433 2 24699999999999965433
No 401
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.01 E-value=0.8 Score=58.14 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.1
Q ss_pred cEEEEcCCCCcHhHHHHHH
Q 001758 44 VTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~ 62 (1017)
++++.||||+|||+..-.+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~l 504 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQL 504 (731)
T ss_pred eEEEECCCCccHHHHHHHH
Confidence 5799999999999654433
No 402
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.01 E-value=0.4 Score=57.13 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=30.9
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHH
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKM 87 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle~~--~~~IivtqPrrlaa~s~a~r 87 (1017)
.+..++|.|++|+||||.+.+++.+.. ..+++++.... ...++..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~qi~~r 126 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQIKLR 126 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHHHHHH
Confidence 467999999999999999998877543 23555554332 23344444
No 403
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.98 E-value=0.38 Score=54.92 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=22.0
Q ss_pred CchHHHHHH-HHHHhhhcccCCCCCccccccchhh
Q 001758 450 PEVVGDALD-LLDHKRALQKISPRGRYEPTFYGRL 483 (1017)
Q Consensus 450 ~~~i~~Al~-~L~~lgaLd~~~~~g~~~lT~lG~~ 483 (1017)
...+.+.++ .|.+.|.|.. .+.|+ .+|+.|..
T Consensus 290 ~~~~~~~~e~~Li~~~li~~-~~~gr-~~~~~~~~ 322 (328)
T PRK00080 290 RDTIEDVYEPYLIQQGFIQR-TPRGR-VATPKAYE 322 (328)
T ss_pred cchHHHHhhHHHHHcCCccc-CCchH-HHHHHHHH
Confidence 345666777 8889999876 45565 47777653
No 404
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.93 E-value=0.74 Score=51.99 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=26.3
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEe
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmS 176 (1017)
..+.+||||||+ .+..|-.-.++|.+.....+..+|+.+
T Consensus 108 ~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 489999999999 445566666666655555555555554
No 405
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.89 E-value=0.78 Score=46.34 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCcHhHHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l 63 (1017)
-.+.|+|++|+||||++....
T Consensus 6 mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHH
Confidence 368999999999999887654
No 406
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.87 E-value=1.6 Score=55.36 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCcHhHHH
Q 001758 42 NRVTLIVGETGCGKSSQV 59 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqi 59 (1017)
..++|+.||+|+|||+.+
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999765
No 407
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.84 E-value=1.9 Score=50.07 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=26.9
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
..+.+|||||+|. ++......++|.+-.-.+...+|++|..
T Consensus 140 ~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 3789999999993 4556666777766543344555554444
No 408
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.77 E-value=1.4 Score=45.76 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=20.9
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~l 63 (1017)
+..+..+.|.||.||||||.+-..+
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567899999999999999886554
No 409
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.76 E-value=1.1 Score=56.53 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCcHhHHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l 63 (1017)
..+++.||+|+||||.+-.+.
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 379999999999998765444
No 410
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=90.67 E-value=2.6 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~ 66 (1017)
+.+++.||+|+|||+.+-.+..+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999998765555443
No 411
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.64 E-value=0.76 Score=46.81 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=61.7
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHHHhcC--CCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeeccccccCCCCcE
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~lle~~--~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t~I 116 (1017)
+..+..+.|.|+.||||||.+-.+.-... .+.|.+- -..+......+. ....+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~-g~~~~~~~~~~~--------~~~~i~~~~q----------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD-GKEVSFASPRDA--------RRAGIAMVYQ----------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CEECCcCCHHHH--------HhcCeEEEEe-----------
Confidence 45789999999999999998765542211 1233321 110000000000 0112344311
Q ss_pred EEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccChHHHHHHH
Q 001758 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYF 188 (1017)
Q Consensus 117 iv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld~~~~~~~f 188 (1017)
.+.|...+......+ ..+.+++++||-= ..++.+....+.+.+......-..|+++ |-+.+.+.++.
T Consensus 83 --LS~G~~qrl~laral-~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~-sh~~~~~~~~~ 149 (163)
T cd03216 83 --LSVGERQMVEIARAL-ARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFI-SHRLDEVFEIA 149 (163)
T ss_pred --cCHHHHHHHHHHHHH-hcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCHHHHHHhC
Confidence 556665554433222 2378999999997 6677655554444443332222334443 33334444444
No 412
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.59 E-value=0.45 Score=52.18 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCcHhHHH
Q 001758 43 RVTLIVGETGCGKSSQV 59 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqi 59 (1017)
..+++.||+|-||||+.
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 47999999999999854
No 413
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.53 E-value=1.5 Score=53.62 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.7
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~l 63 (1017)
..|+.+.|+||+||||||.+-..+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999776554
No 414
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.52 E-value=0.91 Score=46.72 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=31.2
Q ss_pred EEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHh
Q 001758 45 TLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAK 90 (1017)
Q Consensus 45 vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~ 90 (1017)
++|.|++|||||+...+++.+.+ .+++++.+-+..-....+|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG-GPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-CCeEEEEccCcCCHHHHHHHHH
Confidence 68999999999999888887744 4555554444434455666554
No 415
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.47 E-value=1.6 Score=51.17 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=25.3
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
.++.++||||+|. ++......++|.+ ...++-.++++.||
T Consensus 116 ~~~kViiIDead~--m~~~aanaLLk~L-Eep~~~~~fIL~a~ 155 (394)
T PRK07940 116 GRWRIVVIEDADR--LTERAANALLKAV-EEPPPRTVWLLCAP 155 (394)
T ss_pred CCcEEEEEechhh--cCHHHHHHHHHHh-hcCCCCCeEEEEEC
Confidence 3789999999993 3334445556544 44444556666666
No 416
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=90.47 E-value=0.1 Score=53.15 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=24.3
Q ss_pred CCcccccccccccCCCCCCCCCCCCCC
Q 001758 760 KRPACKFFYSLQGCRNGDSCIFSHDLG 786 (1017)
Q Consensus 760 ~~~~C~~f~~~g~C~~G~~C~f~H~~~ 786 (1017)
...+|+-|-++|+|-|||.|+|.|+.+
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred CcccccchhhcccccCCchhhhhhhhh
Confidence 355899999999999999999999883
No 417
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=90.35 E-value=0.66 Score=58.20 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=37.4
Q ss_pred cCCCCchHHHHHHHHHHH----cCCcEEEEcCCCCcHhHHHHHHHHhcC---CCcEEEeccHHHH
Q 001758 23 FSSLPVMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFA 80 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~ai~----~~~~vII~apTGSGKTtqip~~lle~~---~~~IivtqPrrla 80 (1017)
...+..++.|.+++..+. +++.++|.||||+|||.....+.+... ..+|++..++..+
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~l 75 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKAL 75 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHH
Confidence 455677888988887654 566799999999999954444433222 1344444444433
No 418
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.34 E-value=0.71 Score=49.92 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle~ 66 (1017)
.+..++|.|++|+|||+...+++.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46899999999999999988887654
No 419
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.32 E-value=0.75 Score=53.42 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHhcCC--CcEEEec
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQ 75 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle~~~--~~Iivtq 75 (1017)
.+..++|.|++|+||||.+.+++.+... .+++++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4689999999999999998888765432 3565543
No 420
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.32 E-value=1.4 Score=52.66 Aligned_cols=140 Identities=20% Similarity=0.189 Sum_probs=70.7
Q ss_pred EcCCCCcHhHHHHHHHH---hcCCCcEEEec-cHHHHHHH-------H-HHHHHhhcCCccCCeeeEe-ec-cccccCCC
Q 001758 48 VGETGCGKSSQVPQFLL---AENMEPILCTQ-PRRFAVVA-------V-AKMVAKGRNCELGGEVGYH-IG-HSKHLSER 113 (1017)
Q Consensus 48 ~apTGSGKTtqip~~ll---e~~~~~Iivtq-Prrlaa~s-------~-a~rva~e~~~~lg~~VGy~-v~-~~~~~~~~ 113 (1017)
.+.||||||..++..|+ ..|.+..++.+ -.-++--. + ++++-.+.-...+..+... |. +.. -+..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse-hnd~ 81 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE-HNDA 81 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc-cCCc
Confidence 57899999976665554 56766544333 22222111 1 2222221111112211111 11 111 3456
Q ss_pred CcEEEECHHHHHHHHHhc---CCCc---cCce-EEEEeccccccccc-----c------HHHHHHHHHHhcCCCceEEEE
Q 001758 114 SKIVFKTAGVLLDEMRDR---GLNA---LKYK-VIILDEVHERSVES-----D------LVLVCVKQLLLKKNDLRVVLM 175 (1017)
Q Consensus 114 t~Iiv~T~g~Ll~~l~~~---~l~l---~~~~-~IIIDEaHER~~~~-----d------~ll~~lk~ll~~~~~lklIlm 175 (1017)
-.|+|+|.+.|...+... .+.+ .+.. +.+-||||+-...+ | -+...++..+..+++--++..
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~lef 161 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLEF 161 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeehh
Confidence 789999999987765432 1111 1334 45669999621111 1 122344455566778888899
Q ss_pred eeccC--hHHHHHHH
Q 001758 176 SATAD--ITKYRDYF 188 (1017)
Q Consensus 176 SATld--~~~~~~~f 188 (1017)
|||.+ .....+|-
T Consensus 162 ~at~~k~k~v~~ky~ 176 (812)
T COG3421 162 SATIPKEKSVEDKYE 176 (812)
T ss_pred hhcCCccccHHHHhc
Confidence 99975 23344444
No 421
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=90.31 E-value=0.75 Score=54.22 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=49.9
Q ss_pred HHHHHHHHHHH----c-CCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEee
Q 001758 30 SLREKIVEKVL----E-NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (1017)
Q Consensus 30 ~~Q~eil~ai~----~-~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v 104 (1017)
.-|.++++.+. + .+.-++-|-||||||+.+...+.+-.... +|..|.+.+|-|++..+.+.+-. ..|-|-|
T Consensus 15 GDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rPt-LV~AhNKTLAaQLy~Efk~fFP~---NaVEYFV 90 (663)
T COG0556 15 GDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQRPT-LVLAHNKTLAAQLYSEFKEFFPE---NAVEYFV 90 (663)
T ss_pred CCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhCCCe-EEEecchhHHHHHHHHHHHhCcC---cceEEEe
Confidence 33555555554 3 36788999999999998988887766544 55556666677788777776543 3466665
Q ss_pred ccc
Q 001758 105 GHS 107 (1017)
Q Consensus 105 ~~~ 107 (1017)
..-
T Consensus 91 SYY 93 (663)
T COG0556 91 SYY 93 (663)
T ss_pred eec
Confidence 543
No 422
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=90.19 E-value=0.52 Score=56.78 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=74.8
Q ss_pred HHHHHHHHHHc---------CCcEEEEcCCCCcHhHHHHHHHHh----cC--CCcEEEeccHHHHHHHHHHHHHhhcCC-
Q 001758 31 LREKIVEKVLE---------NRVTLIVGETGCGKSSQVPQFLLA----EN--MEPILCTQPRRFAVVAVAKMVAKGRNC- 94 (1017)
Q Consensus 31 ~Q~eil~ai~~---------~~~vII~apTGSGKTtqip~~lle----~~--~~~IivtqPrrlaa~s~a~rva~e~~~- 94 (1017)
.|.-++..+.. .+.++|.-+=|-|||+.+....+- .+ ...|+++.+.+-.|..+.+.+......
T Consensus 2 wQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~ 81 (477)
T PF03354_consen 2 WQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEAS 81 (477)
T ss_pred cHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 46667776652 246788889999999765544321 11 236889999888888777766654321
Q ss_pred -ccCCeeeEeeccccccCCCCcEEEECHHHHHHHHHh--cCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCce
Q 001758 95 -ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRD--RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1017)
Q Consensus 95 -~lg~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~--~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lk 171 (1017)
.+....+..+. ......|.+-..+-+++.+.. +...-.+.+++|+||+|+. ..+-+...++.-...+++..
T Consensus 82 ~~l~~~~~~~~~----~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~--~~~~~~~~l~~g~~~r~~pl 155 (477)
T PF03354_consen 82 PELRKRKKPKII----KSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAH--KDDELYDALESGMGARPNPL 155 (477)
T ss_pred hhhccchhhhhh----hhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCC--CCHHHHHHHHhhhccCCCce
Confidence 11111111100 001122222222222211111 1122237899999999953 23335555666566666655
Q ss_pred EEE-Eeecc
Q 001758 172 VVL-MSATA 179 (1017)
Q Consensus 172 lIl-mSATl 179 (1017)
++. .||..
T Consensus 156 ~~~ISTag~ 164 (477)
T PF03354_consen 156 IIIISTAGD 164 (477)
T ss_pred EEEEeCCCC
Confidence 544 44554
No 423
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.05 E-value=0.84 Score=57.73 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.1
Q ss_pred cEEEEcCCCCcHhHHHHHHH
Q 001758 44 VTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~l 63 (1017)
.++++||||+|||+.+-.+.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA 509 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLS 509 (758)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999997665443
No 424
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.98 E-value=3.2 Score=47.48 Aligned_cols=48 Identities=27% Similarity=0.439 Sum_probs=38.7
Q ss_pred CCCCchHHHHHHHHHHHcCC------cEEEEcCCCCcHhHHHHHHHHhcCCCcE
Q 001758 24 SSLPVMSLREKIVEKVLENR------VTLIVGETGCGKSSQVPQFLLAENMEPI 71 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~ai~~~~------~vII~apTGSGKTtqip~~lle~~~~~I 71 (1017)
+..|-++.|-..+..+..++ .++|-|.+|+|||..+-+++.......+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~v 59 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENV 59 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcce
Confidence 46788999999999988664 3589999999999999888876654433
No 425
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.95 E-value=2.2 Score=49.86 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCcHhHHHH
Q 001758 42 NRVTLIVGETGCGKSSQVP 60 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip 60 (1017)
...++|.|++|+|||.++-
T Consensus 113 ~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 5789999999999997553
No 426
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.83 E-value=1.1 Score=53.99 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCcHhHHHH
Q 001758 43 RVTLIVGETGCGKSSQVP 60 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip 60 (1017)
+.+++.||+|+|||+.+-
T Consensus 217 ~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred cceEEECCCCCcHHHHHH
Confidence 579999999999997543
No 427
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.82 E-value=1.2 Score=54.66 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=21.5
Q ss_pred HHHHHHHcCC---cEEEEcCCCCcHhHHHHHHHH
Q 001758 34 KIVEKVLENR---VTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 34 eil~ai~~~~---~vII~apTGSGKTtqip~~ll 64 (1017)
.+..++.+++ ..++.||.|+|||+.+-.+..
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444455553 469999999999987655543
No 428
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.82 E-value=1 Score=57.21 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle 65 (1017)
.+.+++.||+|+|||+.+-.+.-+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHH
Confidence 367999999999999876544433
No 429
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.81 E-value=1.5 Score=50.13 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHHHcC----CcEEEEcCCCCcHhHHHHHH
Q 001758 27 PVMSLREKIVEKVLEN----RVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~~~----~~vII~apTGSGKTtqip~~ 62 (1017)
+++|-|....+.+... .-.++.||.|.|||+.+-.+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 3466777777776643 25889999999999765444
No 430
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=89.77 E-value=0.37 Score=49.96 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=25.2
Q ss_pred CcEEEEcCCCCcHhHHHHHHHH--hcCCCcEEEecc
Q 001758 43 RVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQP 76 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ll--e~~~~~IivtqP 76 (1017)
+..++.||-+||||+.+.+.+. +....++++.-|
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp 37 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKP 37 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred EEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4578999999999998888764 334456777766
No 431
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=89.71 E-value=0.11 Score=55.94 Aligned_cols=31 Identities=42% Similarity=0.881 Sum_probs=27.1
Q ss_pred CCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 001758 756 SLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQ 787 (1017)
Q Consensus 756 ~~~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~ 787 (1017)
+..++..+|-|| ..|.|..|+.|.|+|++..
T Consensus 87 gvDPKSvvCafF-k~g~C~KG~kCKFsHdl~~ 117 (343)
T KOG1763|consen 87 GVDPKSVVCAFF-KQGTCTKGDKCKFSHDLAV 117 (343)
T ss_pred CCCchHHHHHHH-hccCCCCCCcccccchHHH
Confidence 346788899999 8899999999999999854
No 432
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.69 E-value=0.26 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=17.8
Q ss_pred CcEEEEcCCCCcHhHHHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~ll 64 (1017)
..++|+|||||||||.+-.++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998765543
No 433
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.65 E-value=0.2 Score=53.55 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCcHhHHHHHHH
Q 001758 43 RVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~l 63 (1017)
+.++|+||.|+||||.+-...
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999998776554
No 434
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=89.50 E-value=1.2 Score=45.81 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.7
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~l 63 (1017)
+..++.+.|.||.||||||.+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~ 49 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLIL 49 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999999776554
No 435
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.43 E-value=1.5 Score=45.39 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=21.6
Q ss_pred HHHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 38 ai~~~~~vII~apTGSGKTtqip~~l 63 (1017)
.+..+..+.|.||.||||||.+-.+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHH
Confidence 45678999999999999999876543
No 436
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=89.39 E-value=1.3 Score=46.29 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=60.5
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhc--CCCcEEEeccHHHHHHHHHHHHHhhcCCccC-CeeeEeeccccccCCCCcEEE
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG-GEVGYHIGHSKHLSERSKIVF 118 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva~e~~~~lg-~~VGy~v~~~~~~~~~t~Iiv 118 (1017)
++..+++||-.||||+-+.+.+... ...++++.-|. .+...+ +.|.-.++. ...-++|
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~--------------iD~R~~~~~V~Sr~G~-----~~~A~~i 64 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA--------------IDTRYGVGKVSSRIGL-----SSEAVVI 64 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc--------------cccccccceeeeccCC-----cccceec
Confidence 4567899999999998887776532 33455555551 111111 112211111 1223445
Q ss_pred ECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccChHH
Q 001758 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITK 183 (1017)
Q Consensus 119 ~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld~~~ 183 (1017)
-.+.-+...+...... ..+++|.||||+ -++. -+...+..+.. ++-+-++-+.++.+-
T Consensus 65 ~~~~~i~~~i~~~~~~-~~~~~v~IDEaQ--F~~~-~~v~~l~~lad---~lgi~Vi~~GL~~DF 122 (201)
T COG1435 65 PSDTDIFDEIAALHEK-PPVDCVLIDEAQ--FFDE-ELVYVLNELAD---RLGIPVICYGLDTDF 122 (201)
T ss_pred CChHHHHHHHHhcccC-CCcCEEEEehhH--hCCH-HHHHHHHHHHh---hcCCEEEEecccccc
Confidence 5565666666543211 138899999999 2222 23333444332 234555666766443
No 437
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.39 E-value=1.2 Score=48.21 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEe
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCT 74 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~~~~~Iivt 74 (1017)
++|+.-||+|+|||... ..+.......++.+
T Consensus 152 knVLFyGppGTGKTm~A-kalane~kvp~l~v 182 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA-KALANEAKVPLLLV 182 (368)
T ss_pred ceeEEECCCCccHHHHH-HHHhcccCCceEEe
Confidence 79999999999999644 44444443344444
No 438
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.37 E-value=0.35 Score=58.33 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCccCcCCCCchHHHHHHHHHHH-----cCCcEEEEcCCCCcHhHHHHHHHHhcCCC------------cEEEeccHHHH
Q 001758 18 FTSPEFSSLPVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQFLLAENME------------PILCTQPRRFA 80 (1017)
Q Consensus 18 ~~~~~r~~LPi~~~Q~eil~ai~-----~~~~vII~apTGSGKTtqip~~lle~~~~------------~IivtqPrrla 80 (1017)
.+.+.-..+++.++|...+..+. .++--|+..+-|-|||..++..++..... .-+++.|-++.
T Consensus 316 te~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli 395 (901)
T KOG4439|consen 316 TETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLI 395 (901)
T ss_pred cCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHH
Q ss_pred HHHHHHHHHhhcCCccCCeeeEeecccccc---CCCCcEEEECHHHHHH----HHHhcCCCcc----CceEEEEeccc
Q 001758 81 VVAVAKMVAKGRNCELGGEVGYHIGHSKHL---SERSKIVFKTAGVLLD----EMRDRGLNAL----KYKVIILDEVH 147 (1017)
Q Consensus 81 a~s~a~rva~e~~~~lg~~VGy~v~~~~~~---~~~t~Iiv~T~g~Ll~----~l~~~~l~l~----~~~~IIIDEaH 147 (1017)
-+--++.-...-...+...+-+...+.+.. -...+|+++|+..+.+ ++....-..- .++-||+||||
T Consensus 396 ~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH 473 (901)
T KOG4439|consen 396 HQWEAEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAH 473 (901)
T ss_pred HHHHHHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhh
No 439
>PRK11054 helD DNA helicase IV; Provisional
Probab=89.35 E-value=0.81 Score=57.37 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=66.6
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHH---HHHhcC---CCcEEEeccHHHHHHHHHHHHHhhcCCccCC
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1017)
Q Consensus 25 ~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~---~lle~~---~~~IivtqPrrlaa~s~a~rva~e~~~~lg~ 98 (1017)
+-|+++.|.+++.. ....++|.|..|||||+.+.. +++..+ ...|+++...+-||..+.+|+...+|
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg----- 266 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG----- 266 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC-----
Confidence 46899999998864 345689999999999965543 344433 23789888989999999999887543
Q ss_pred eeeEeeccccccCCCCcEEEECHHHHHHHH-HhcCCCccCceEEEEeccc
Q 001758 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEM-RDRGLNALKYKVIILDEVH 147 (1017)
Q Consensus 99 ~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l-~~~~l~l~~~~~IIIDEaH 147 (1017)
...|.+.|--.|...+ ....-....++.+..|+-.
T Consensus 267 --------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 267 --------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred --------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 1357788876655433 3211111134445566543
No 440
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.33 E-value=0.98 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.5
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~l 63 (1017)
+..++.+.|.|+.||||||.+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999776543
No 441
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.16 E-value=0.52 Score=54.22 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCcHhHH
Q 001758 41 ENRVTLIVGETGCGKSSQ 58 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtq 58 (1017)
+..|+++.||||||||.+
T Consensus 225 eKSNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLL 242 (564)
T ss_pred ecccEEEECCCCCchhHH
Confidence 346899999999999953
No 442
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.05 E-value=1.9 Score=54.84 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=19.1
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhcC
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~~ 67 (1017)
+.+++.||+|||||+.+-.+..+.+
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999987655555544
No 443
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.96 E-value=2.6 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=19.0
Q ss_pred HHHHHHHcCC---cEEEEcCCCCcHhHHH
Q 001758 34 KIVEKVLENR---VTLIVGETGCGKSSQV 59 (1017)
Q Consensus 34 eil~ai~~~~---~vII~apTGSGKTtqi 59 (1017)
.+..++..++ ..+++||.|+|||+..
T Consensus 28 ~L~~~i~~~~l~hayLf~Gp~G~GKtt~A 56 (614)
T PRK14971 28 TLKNAIATNKLAHAYLFCGPRGVGKTTCA 56 (614)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCCHHHHH
Confidence 3455555653 4799999999999844
No 444
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=88.87 E-value=0.64 Score=50.08 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.4
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~lle 65 (1017)
..+..+.|.|++|||||+...+++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999988888754
No 445
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.87 E-value=1.8 Score=53.51 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHh
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle 65 (1017)
+.+++.||+|+||||.+-.+.-+
T Consensus 111 ~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999977665433
No 446
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=88.85 E-value=0.72 Score=52.81 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhcCCCcEEE
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILC 73 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~~~~~Iiv 73 (1017)
.-++|.||.|||||.+.-....+.+...|.+
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~v 179 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVM 179 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE
Confidence 3578999999999987766666655443433
No 447
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.82 E-value=0.64 Score=49.77 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=21.9
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~lle 65 (1017)
..++.+.|.|++|+|||+.+.+++..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 34789999999999999888877654
No 448
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=88.76 E-value=0.97 Score=56.80 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHH---HHHhc-CC--CcEEEeccHHHHHHHHHHHHHhhcCCccCCeee
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLAE-NM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~---~lle~-~~--~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
+.+.|.+++.. .+..++|.|..|||||+.+.. ++++. +. .+|+++..++-||..+.+|+...++..
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~------ 74 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK------ 74 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc------
Confidence 57788888775 346778889999999955443 34443 32 478888888888999999988754321
Q ss_pred EeeccccccCCCCcEEEECHHHHHHHHHhcCCC-c-cCceEEEEeccc
Q 001758 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLN-A-LKYKVIILDEVH 147 (1017)
Q Consensus 102 y~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~-l-~~~~~IIIDEaH 147 (1017)
....+.++|--.+...+...... + ..-+.-|+|+..
T Consensus 75 ----------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 75 ----------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred ----------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 11347788876654433221100 0 022355778776
No 449
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.64 E-value=0.25 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=20.2
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~ 62 (1017)
+..+.+++|+||.||||||.+-.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999977444
No 450
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.51 E-value=0.4 Score=55.60 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=19.4
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~l 63 (1017)
..+..++|+|||||||||.+-.++
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~ 170 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIY 170 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999998875544
No 451
>PLN02165 adenylate isopentenyltransferase
Probab=88.47 E-value=0.31 Score=55.30 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=18.1
Q ss_pred HcCCcEEEEcCCCCcHhHHHHH
Q 001758 40 LENRVTLIVGETGCGKSSQVPQ 61 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~ 61 (1017)
..+.+++|.||||||||++...
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 4567899999999999986644
No 452
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.44 E-value=1.2 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle 65 (1017)
+..+++.||+|+|||+.+-.+.-.
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999766554433
No 453
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=88.40 E-value=0.38 Score=45.93 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=16.0
Q ss_pred cEEEEcCCCCcHhHHHHHHH
Q 001758 44 VTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~l 63 (1017)
+++|+|++||||||..-.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 57999999999999654443
No 454
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=88.39 E-value=1.5 Score=48.75 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=21.9
Q ss_pred cccccccccccccccCCCCCCCCCCCC
Q 001758 731 PGEAPLCVYFINGSCNRGTGCPFSHSL 757 (1017)
Q Consensus 731 ~~~~~~C~~f~~G~C~~G~~C~f~H~~ 757 (1017)
..+..-|.-|++|+|.+ ++|+|.|..
T Consensus 68 ~g~v~aC~Ds~kgrCsR-~nCkylHpp 93 (331)
T KOG2494|consen 68 NGRVIACFDSQKGRCSR-ENCKYLHPP 93 (331)
T ss_pred CCeEEEEeccccCccCc-ccceecCCC
Confidence 34666699999999999 559999987
No 455
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=88.32 E-value=0.56 Score=45.60 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC
Q 001758 33 EKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME 69 (1017)
Q Consensus 33 ~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~ 69 (1017)
+.+.+.+..+.++++.|+-|+||||.+-.++...+..
T Consensus 6 ~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 6 KKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4566677788999999999999999877666555443
No 456
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.32 E-value=2.8 Score=54.09 Aligned_cols=36 Identities=22% Similarity=0.486 Sum_probs=23.7
Q ss_pred CchHHHHHHHHHHH-----cCCcEEEEcCCCCcHhHHHHHH
Q 001758 27 PVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~-----~~~~vII~apTGSGKTtqip~~ 62 (1017)
|+.....++-..+. ..+++++.||+|+|||+.+-.+
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHH
Confidence 55444444444332 3468999999999999766443
No 457
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.26 E-value=2.1 Score=55.30 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCCcHhHHHHHHH
Q 001758 42 NRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~l 63 (1017)
..+.|+.||+|+|||+.+-.+.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 3689999999999998765443
No 458
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.26 E-value=0.88 Score=50.58 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=25.7
Q ss_pred HHHH-HHcCCcEEEEcCCCCcHhHHHHHHHHhcCC
Q 001758 35 IVEK-VLENRVTLIVGETGCGKSSQVPQFLLAENM 68 (1017)
Q Consensus 35 il~a-i~~~~~vII~apTGSGKTtqip~~lle~~~ 68 (1017)
+++. +..++.++++||||||||..+-.++.+...
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred HHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCc
Confidence 3443 457789999999999999988777754433
No 459
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.25 E-value=2.8 Score=45.51 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHHcCC-cEEEEcCCCCcHhHHHHHHHHhc---CCCcEEEeccHHHHHHHHHHHHHhh
Q 001758 34 KIVEKVLENR-VTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKG 91 (1017)
Q Consensus 34 eil~ai~~~~-~vII~apTGSGKTtqip~~lle~---~~~~IivtqPrrlaa~s~a~rva~e 91 (1017)
.+-..+..++ .+.|+|+-|||||+..- .+++. ....+++..-..+....+..++...
T Consensus 42 ~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~ 102 (269)
T COG3267 42 MLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDATLLEAIVAD 102 (269)
T ss_pred HHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHHHHHHHHHHH
Confidence 3444456677 99999999999997665 33322 2123334444445555555555553
No 460
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.19 E-value=2.1 Score=44.20 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=55.8
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHHHhcC--CCcEEEeccHHHHHH-HHHHHHHhhcCCccCCeeeEeeccccccCC---
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVV-AVAKMVAKGRNCELGGEVGYHIGHSKHLSE--- 112 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~lle~~--~~~IivtqPrrlaa~-s~a~rva~e~~~~lg~~VGy~v~~~~~~~~--- 112 (1017)
+..+..+.|.|+.||||||.+-.+.-... .+.|.+--- .+.-. ....... ..++|..........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~-~~~~~~~~~~~~~--------~~i~~~~q~~~~~~~~t~ 93 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE-DLTDLEDELPPLR--------RRIGMVFQDFALFPHLTV 93 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE-EccccchhHHHHh--------hcEEEEecCCccCCCCCH
Confidence 35788999999999999997755542211 123433110 00000 0000111 123443111110000
Q ss_pred CCcEEE-ECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHH
Q 001758 113 RSKIVF-KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL 164 (1017)
Q Consensus 113 ~t~Iiv-~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll 164 (1017)
.-.+.+ .+.|...+......+ ..+..++|+||-- ..++.+....+.+.+.
T Consensus 94 ~~~l~~~lS~G~~qr~~la~al-~~~p~llilDEP~-~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 94 LENIALGLSGGQQQRVALARAL-AMDPDVLLLDEPT-SALDPITRREVRALLK 144 (178)
T ss_pred HHheeecCCHHHHHHHHHHHHH-HCCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 111222 566666555433222 2378999999998 5666665554444443
No 461
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=88.18 E-value=1.3 Score=55.11 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=84.6
Q ss_pred HHhhCCCCCCCEEEEeCCHHHHHHHHHHhc---CCC-----------------CCcEEEEecCCCCHHHHHHHHHhccC-
Q 001758 268 IHKNESDIEKSILVFLPTYYALEQQWHLMK---PLS-----------------SFFKVHILHSSVDTEQALMAMKICKS- 326 (1017)
Q Consensus 268 i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~---~~~-----------------~~~~v~~lHs~l~~~er~~i~~~f~~- 326 (1017)
|.....+.+.+.|||..+......+-.+|. ..+ .+....-+.|.....+|.+..+.|..
T Consensus 1134 IL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp 1213 (1567)
T KOG1015|consen 1134 ILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDP 1213 (1567)
T ss_pred HHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCc
Confidence 333334456799999887766555544443 111 12346677888999999999888853
Q ss_pred --Cc--EEEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhh
Q 001758 327 --HR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSF 402 (1017)
Q Consensus 327 --gr--kVIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~ 402 (1017)
.| -.||+|-...-||++-..+-||. ||...+..-- .+.+=|+=|-|...|-..|||+-...
T Consensus 1214 ~NlRaRl~LISTRAGsLGiNLvAANRVII--------fDasWNPSyD-------tQSIFRvyRfGQtKPvyiYRfiAqGT 1278 (1567)
T KOG1015|consen 1214 TNLRARLFLISTRAGSLGINLVAANRVII--------FDASWNPSYD-------TQSIFRVYRFGQTKPVYIYRFIAQGT 1278 (1567)
T ss_pred ccceeEEEEEeeccCccccceeecceEEE--------EecccCCccc-------hHHHHHHHhhcCcCceeehhhhhccc
Confidence 33 77999999999999987777775 6665544322 23356888899999999999987654
Q ss_pred h
Q 001758 403 F 403 (1017)
Q Consensus 403 ~ 403 (1017)
.
T Consensus 1279 m 1279 (1567)
T KOG1015|consen 1279 M 1279 (1567)
T ss_pred H
Confidence 3
No 462
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=88.04 E-value=0.38 Score=61.08 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCcHhH--HHHHHHHhc-CCCcEEEeccHHHHHHHHHHHHHhhcCCccCCeeeEeecc
Q 001758 30 SLREKIVEKVLENRVTLIVGETGCGKSS--QVPQFLLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (1017)
Q Consensus 30 ~~Q~eil~ai~~~~~vII~apTGSGKTt--qip~~lle~-~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~ 106 (1017)
+|--+++-.+.-++--|..+.||=|||. .+|.++... |.+.-+||..--+|.+ =++.++... .-+|-+||.-...
T Consensus 139 ~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~R-Daewm~p~y-~flGLtVg~i~~~ 216 (1025)
T PRK12900 139 PYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQR-DKEWMNPVF-EFHGLSVGVILNT 216 (1025)
T ss_pred ccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhh-hHHHHHHHH-HHhCCeeeeeCCC
Confidence 3334466666666666899999999993 345555443 3344556655444422 233332211 1345556643221
Q ss_pred ----ccccCCCCcEEEECHHHH-----HHHHHhc--CCCccCceEEEEeccc
Q 001758 107 ----SKHLSERSKIVFKTAGVL-----LDEMRDR--GLNALKYKVIILDEVH 147 (1017)
Q Consensus 107 ----~~~~~~~t~Iiv~T~g~L-----l~~l~~~--~l~l~~~~~IIIDEaH 147 (1017)
+++..=.++|+|+|..-| ...|... .+-...+.+.|||||+
T Consensus 217 ~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 217 MRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 111223689999997433 2222211 1112378899999999
No 463
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=88.02 E-value=1.7 Score=45.07 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.2
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~l 63 (1017)
..+..+.|.|+.||||||.+-.+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999776554
No 464
>PRK13695 putative NTPase; Provisional
Probab=88.01 E-value=3.6 Score=42.19 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.8
Q ss_pred cEEEEcCCCCcHhHHHHHHH
Q 001758 44 VTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~l 63 (1017)
.++|+|+.|+||||.+-.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999877654
No 465
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.95 E-value=0.41 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHH
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~ll 64 (1017)
.+..++|+|||||||||.+-.++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998866553
No 466
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=87.93 E-value=0.59 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCcHhHHHHHH
Q 001758 41 ENRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~ 62 (1017)
.++.++|.||.|+||||.+-..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i 49 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQI 49 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999866544
No 467
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=87.92 E-value=2.2 Score=48.50 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=27.3
Q ss_pred cCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeec
Q 001758 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 136 ~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSAT 178 (1017)
..+.++||||||. ++..-.-.+||.+-.-.++..+|++|.-
T Consensus 112 g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 112 GIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred CCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 3789999999993 4555666777755443445556665543
No 468
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=87.90 E-value=1.4 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHH
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~l 63 (1017)
.++.++|+||.||||||.+-.+.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHH
Confidence 45789999999999998776554
No 469
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.89 E-value=3.5 Score=52.29 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCcHhHHHH
Q 001758 42 NRVTLIVGETGCGKSSQVP 60 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip 60 (1017)
..++++.||+|+|||+.+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 470
>PF12846 AAA_10: AAA-like domain
Probab=87.86 E-value=0.46 Score=52.75 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhcCC--CcEEEeccH
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPR 77 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~~~--~~IivtqPr 77 (1017)
|++++|.|+||||||+.+-.++.+... ..+++.-|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 578999999999999887765543221 255555554
No 471
>PRK13764 ATPase; Provisional
Probab=87.86 E-value=0.72 Score=56.53 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=22.6
Q ss_pred HHHHHHH-cCCcEEEEcCCCCcHhHHHHHHH
Q 001758 34 KIVEKVL-ENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 34 eil~ai~-~~~~vII~apTGSGKTtqip~~l 63 (1017)
++++.+. .+++++|+|+|||||||.+..++
T Consensus 248 ~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~ 278 (602)
T PRK13764 248 KLKERLEERAEGILIAGAPGAGKSTFAQALA 278 (602)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 4455543 46899999999999998775544
No 472
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=87.81 E-value=0.49 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHhHHHHHHHHhcC
Q 001758 44 VTLIVGETGCGKSSQVPQFLLAEN 67 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip~~lle~~ 67 (1017)
+++++|++||||||.+-.+....+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 489999999999998877765554
No 473
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.73 E-value=2.7 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 43 RVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip~~lle~ 66 (1017)
+.+++.||+|+|||+++-.+..+.
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHh
Confidence 469999999999998665544433
No 474
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.72 E-value=0.75 Score=52.15 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcC
Q 001758 35 IVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN 67 (1017)
Q Consensus 35 il~ai~~~~~vII~apTGSGKTtqip~~lle~~ 67 (1017)
+..++..+++++|+|+|||||||++-..+..-.
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 555677889999999999999998876665443
No 475
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=87.64 E-value=1.2 Score=56.61 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=26.1
Q ss_pred CchHHHHHHHHHHH--------cCCcEEEEcCCCCcHhHHHHHHH
Q 001758 27 PVMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~--------~~~~vII~apTGSGKTtqip~~l 63 (1017)
=.....+.|++.+. .+..+++.||+|+|||+.+-.+.
T Consensus 326 g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia 370 (784)
T PRK10787 326 GLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIA 370 (784)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHH
Confidence 34556667776544 35689999999999997654443
No 476
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=87.57 E-value=1.2 Score=46.15 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.3
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~l 63 (1017)
..++.+.|.|+.||||||.+-.+.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999776554
No 477
>PRK09354 recA recombinase A; Provisional
Probab=87.49 E-value=0.94 Score=51.89 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=22.8
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~lle~ 66 (1017)
..++.+.|.||+|||||+...+++.+.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~ 84 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA 84 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999988887654
No 478
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.40 E-value=2.7 Score=54.17 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCcHhHHHH
Q 001758 43 RVTLIVGETGCGKSSQVP 60 (1017)
Q Consensus 43 ~~vII~apTGSGKTtqip 60 (1017)
.++|++||.|+|||+.+-
T Consensus 209 ~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CceeEECCCCCCHHHHHH
Confidence 689999999999998653
No 479
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.32 E-value=2.6 Score=54.35 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.0
Q ss_pred cEEEEcCCCCcHhHHHH
Q 001758 44 VTLIVGETGCGKSSQVP 60 (1017)
Q Consensus 44 ~vII~apTGSGKTtqip 60 (1017)
.++++||||+|||+..-
T Consensus 541 ~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 541 SFLFSGPTGVGKTELTK 557 (821)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47899999999996543
No 480
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.30 E-value=3.3 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~ 66 (1017)
.+.+++.||+|+|||+.+-.+..+.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc
Confidence 3679999999999998765544443
No 481
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.25 E-value=2.2 Score=51.01 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=21.0
Q ss_pred HHHHHHHcCC---cEEEEcCCCCcHhHHHHHHH
Q 001758 34 KIVEKVLENR---VTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 34 eil~ai~~~~---~vII~apTGSGKTtqip~~l 63 (1017)
.+..++..++ ..++.||.|+|||+.+-.+.
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 3344455553 57899999999998765554
No 482
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.17 E-value=3.4 Score=50.08 Aligned_cols=139 Identities=16% Similarity=0.235 Sum_probs=79.9
Q ss_pred CCcEEEEcCCCCcHhH-HHHHH--HHhcCCC-cEEEeccHHHHHHHHHHHHHhhcCCccCCe-e-e---EeeccccccCC
Q 001758 42 NRVTLIVGETGCGKSS-QVPQF--LLAENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGE-V-G---YHIGHSKHLSE 112 (1017)
Q Consensus 42 ~~~vII~apTGSGKTt-qip~~--lle~~~~-~IivtqPrrlaa~s~a~rva~e~~~~lg~~-V-G---y~v~~~~~~~~ 112 (1017)
.+-.+.--|--.|||. .+|.+ ++..-.+ +|.++...+-++..+.+.+...+....+.. + . -.+.+... ..
T Consensus 202 QkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s~p-g~ 280 (668)
T PHA03372 202 QKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISIDHR-GA 280 (668)
T ss_pred ccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEecC-CC
Confidence 4667777899999993 33332 3332222 799999999888877666543222112211 1 0 00111111 11
Q ss_pred CCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEeeccChHHHHHHHhhc
Q 001758 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDL 191 (1017)
Q Consensus 113 ~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSATld~~~~~~~f~~~ 191 (1017)
++.++++| ....+.+.-.++++++||||| -+..|.+..++--+. ..+.|+|..|.|-..+.-..|+.++
T Consensus 281 Kst~~fas------c~n~NsiRGQ~fnll~VDEA~--FI~~~a~~tilgfm~--q~~~KiIfISS~Nsg~~sTSfL~~L 349 (668)
T PHA03372 281 KSTALFAS------CYNTNSIRGQNFHLLLVDEAH--FIKKDAFNTILGFLA--QNTTKIIFISSTNTTNDATCFLTKL 349 (668)
T ss_pred cceeeehh------hccCccccCCCCCEEEEehhh--ccCHHHHHHhhhhhc--ccCceEEEEeCCCCCCccchHHHhc
Confidence 22233332 112233334489999999999 566777776665544 4568999999996555555666554
No 483
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=87.12 E-value=0.34 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.4
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~ 62 (1017)
+..+..+.|.||+||||||++-.+
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999987554
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.10 E-value=0.49 Score=48.73 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHH
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~ll 64 (1017)
++.++|.||+||||||++-.++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999997655543
No 485
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=87.09 E-value=5.9 Score=45.01 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEee
Q 001758 123 VLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1017)
Q Consensus 123 ~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSA 177 (1017)
-+.+.+...+. ...+.++||||||. ++..-.-.++|.+ ...|+..+|+++.
T Consensus 111 ~i~~~l~~~p~-~~~~kVvII~~ae~--m~~~aaNaLLK~L-EEPp~~~fILi~~ 161 (314)
T PRK07399 111 EIKRFLSRPPL-EAPRKVVVIEDAET--MNEAAANALLKTL-EEPGNGTLILIAP 161 (314)
T ss_pred HHHHHHccCcc-cCCceEEEEEchhh--cCHHHHHHHHHHH-hCCCCCeEEEEEC
Confidence 34444444433 24899999999993 3444455566655 4455665555443
No 486
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=87.04 E-value=2.1 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.2
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHHH
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~ll 64 (1017)
..|+.+.|+|++||||||.+-.++-
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999998766654
No 487
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.93 E-value=1.4 Score=53.99 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhcC
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~~ 67 (1017)
.+.++++||.|-||||+.-.+....|
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC
Confidence 47899999999999996644443333
No 488
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=86.91 E-value=2.3 Score=52.23 Aligned_cols=107 Identities=22% Similarity=0.410 Sum_probs=63.5
Q ss_pred CCchHHHHHHHHHHH--------cCCcEEEEcCCCCcHhHHHHHHHHhcCCCcEEEeccHHHHHHHHHHHHHhhc-CCcc
Q 001758 26 LPVMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGR-NCEL 96 (1017)
Q Consensus 26 LPi~~~Q~eil~ai~--------~~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~-~~~l 96 (1017)
.-+....+.|++.+. ++..+.++||+|.|||.+ +.++|+.+..++ ...+
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSL----------------------gkSIA~al~RkfvR~sL 383 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSL----------------------GKSIAKALGRKFVRISL 383 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhH----------------------HHHHHHHhCCCEEEEec
Confidence 445677888888774 467899999999999963 344444433322 1233
Q ss_pred CCeeeEeeccccccCCCCcEEE-ECHHHHHHHHHhcCCCccCceEEEEecccc--ccccccHHHHHHHH
Q 001758 97 GGEVGYHIGHSKHLSERSKIVF-KTAGVLLDEMRDRGLNALKYKVIILDEVHE--RSVESDLVLVCVKQ 162 (1017)
Q Consensus 97 g~~VGy~v~~~~~~~~~t~Iiv-~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHE--R~~~~d~ll~~lk~ 162 (1017)
|+ ++.+....+.-+=-+ +-||.+.+-|..... .=-++++||++. .+...|.--++|.-
T Consensus 384 GG-----vrDEAEIRGHRRTYIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEV 444 (782)
T COG0466 384 GG-----VRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEV 444 (782)
T ss_pred Cc-----cccHHHhccccccccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhh
Confidence 33 233333322222222 349999998875332 234799999996 34455655555543
No 489
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.79 E-value=0.34 Score=51.61 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=26.7
Q ss_pred CceEEEEeccccccccccHHHHHHHHHHhcC-CCceEEEEe
Q 001758 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMS 176 (1017)
Q Consensus 137 ~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~-~~lklIlmS 176 (1017)
+.+++|+||-+ -+++.|-+..+-+.+-..+ ++.-+++.|
T Consensus 162 ePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liIT 201 (251)
T COG0396 162 EPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIIT 201 (251)
T ss_pred CCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 78899999999 7888888777666554443 333444444
No 490
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.60 E-value=3.9 Score=52.95 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=13.9
Q ss_pred cEEEEcCCCCcHhHHH
Q 001758 44 VTLIVGETGCGKSSQV 59 (1017)
Q Consensus 44 ~vII~apTGSGKTtqi 59 (1017)
.+++.||||+|||+..
T Consensus 597 ~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 597 SFLFLGPTGVGKTELA 612 (852)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5899999999999654
No 491
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.44 E-value=0.65 Score=53.90 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.5
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~l 63 (1017)
+-.|+.+.|+||+|+||||.+-.+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~ 189 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIA 189 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHH
Confidence 4578999999999999998765543
No 492
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.44 E-value=0.8 Score=51.95 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~lle~ 66 (1017)
+..++.+.|.||+|||||++..+++.+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456899999999999999888877654
No 493
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.38 E-value=2.6 Score=54.51 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHH-----cCCcEEEEcCCCCcHhHHHHHH
Q 001758 27 PVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQF 62 (1017)
Q Consensus 27 Pi~~~Q~eil~ai~-----~~~~vII~apTGSGKTtqip~~ 62 (1017)
|+.....++-..+. ...++|+.||+|+|||+.+-.+
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~l 219 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGL 219 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHH
Confidence 55555555444442 3358999999999999866443
No 494
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.34 E-value=2.5 Score=50.83 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=31.5
Q ss_pred CCCCCccCcCCC-CchHHHHHHHHHHHc---------------CCcEEEEcCCCCcHhHHHHHHHHhcCC
Q 001758 15 SSPFTSPEFSSL-PVMSLREKIVEKVLE---------------NRVTLIVGETGCGKSSQVPQFLLAENM 68 (1017)
Q Consensus 15 ~~~~~~~~r~~L-Pi~~~Q~eil~ai~~---------------~~~vII~apTGSGKTtqip~~lle~~~ 68 (1017)
....|...+... -+..++.++..+|.. -.-|+++||+|||||.+.-...-|.+.
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence 344455555443 244555666555542 145899999999999754443344443
No 495
>PRK08233 hypothetical protein; Provisional
Probab=86.32 E-value=0.8 Score=47.01 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCCcHhHHHHHHHHhc
Q 001758 42 NRVTLIVGETGCGKSSQVPQFLLAE 66 (1017)
Q Consensus 42 ~~~vII~apTGSGKTtqip~~lle~ 66 (1017)
...+.|.|++||||||+.-++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578899999999999886665443
No 496
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=86.31 E-value=1.9 Score=43.96 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=20.9
Q ss_pred HHcCCcEEEEcCCCCcHhHHHHHHH
Q 001758 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (1017)
Q Consensus 39 i~~~~~vII~apTGSGKTtqip~~l 63 (1017)
+..++.+.|.|+.||||||.+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999776554
No 497
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=86.01 E-value=3.6 Score=47.11 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 28 i~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle 65 (1017)
+....+++-.+...+..|+|.|++|+||++.. ..+..
T Consensus 8 m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lA-r~iH~ 44 (329)
T TIGR02974 8 FLEVLEQVSRLAPLDRPVLIIGERGTGKELIA-ARLHY 44 (329)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCChHHHHH-HHHHH
Confidence 34556666666677889999999999999744 44443
No 498
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=85.96 E-value=0.62 Score=52.35 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHh
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle 65 (1017)
.++.++|+||||||||.+...+...
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4678999999999999765555444
No 499
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=85.73 E-value=0.87 Score=48.87 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=25.4
Q ss_pred cCCcEEEEcCCCCcHhHHHHHHHHhc----CCCcEEEe
Q 001758 41 ENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCT 74 (1017)
Q Consensus 41 ~~~~vII~apTGSGKTtqip~~lle~----~~~~Iivt 74 (1017)
.+..++|.|++|+|||+...+++.+. +.+.++++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 56899999999999999988888654 44444444
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=85.70 E-value=0.64 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.5
Q ss_pred HcCCcEEEEcCCCCcHhHHHHHHHH
Q 001758 40 LENRVTLIVGETGCGKSSQVPQFLL 64 (1017)
Q Consensus 40 ~~~~~vII~apTGSGKTtqip~~ll 64 (1017)
..++.++|+||+||||||++-.++-
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3678999999999999997665554
Done!