Query 001758
Match_columns 1017
No_of_seqs 602 out of 3976
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 16:09:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001758.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1056-1059//hhsearch_pdb/001758hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 1.0 1 1 742.2 50.6 598 24-713 91-751 (773)
2 2va8_A SSO2462, SKI2-type heli 1.0 1 1 460.4 34.5 465 27-534 30-555 (715)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 437.2 37.5 450 27-533 25-533 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 416.1 30.7 449 26-534 22-540 (720)
5 4f92_B U5 small nuclear ribonu 1.0 1 1 332.6 34.7 468 18-531 66-635 (1724)
6 4f92_B U5 small nuclear ribonu 1.0 1 1 331.6 29.9 453 28-529 927-1464(1724)
7 3o8b_A HCV NS3 protease/helica 1.0 1 1 327.0 14.7 301 23-404 213-517 (666)
8 3l9o_A ATP-dependent RNA helic 1.0 1 1 326.1 32.9 355 23-402 180-598 (1108)
9 4a4z_A Antiviral helicase SKI2 1.0 1 1 314.6 28.4 354 25-400 37-491 (997)
10 2z83_A Helicase/nucleoside tri 1.0 1 1 301.5 13.3 293 32-401 11-313 (459)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=742.23 Aligned_cols=598 Identities=28% Similarity=0.419 Sum_probs=505.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCC-----CCEEEECCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 899953999999999982991999908998186999999985499-----859995638999999999999431884697
Q 001758 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1017)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTtqip~~lle~~~-----~~IivtqPrrlaa~s~a~rva~e~~~~lg~ 98 (1017)
..+|++.++..+..++..+++++|+||||||||+++|+++++... ..+++++|+|.++.+++.+++.+++..++.
T Consensus 91 ~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~ 170 (773)
T 2xau_A 91 RELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGE 170 (773)
T ss_dssp TTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTT
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 61895999999999996798399988998899999999999740015899658861856999999999999984884532
Q ss_pred EEEEEECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 22674204545689973999878999999980598856750899805321233310799999999851899619997212
Q 001758 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1017)
Q Consensus 99 ~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~s~IIIDEaHER~~~~D~ll~~Lk~ll~~r~dlkiIlmSAT 178 (1017)
.+||.+++++.....++|+++|+|++++.+..+. .+.++++|||||+|+|+++.|.++++++.+...+++.++|+||||
T Consensus 171 ~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT 249 (773)
T 2xau_A 171 EVGYSIRFENKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSAT 249 (773)
T ss_dssp TEEEEETTEEECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EECCEECCCCCCCCCCCEEEECHHHHHHHHHHCC-CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 5662224454558898779989999999974284-435778899547010364558999999999874878629999433
Q ss_pred CCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 69478999986429984148997168884303343741277788873157788521111234699999753224655589
Q 001758 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (1017)
Q Consensus 179 ld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~i~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 258 (1017)
++.+.+.+||+. .+++.+++ +.++++++|... +. ....
T Consensus 250 ~~~~~l~~~~~~------~~vi~v~g----r~~pv~~~~~~~-----------------------~~---------~~~~ 287 (773)
T 2xau_A 250 LDAEKFQRYFND------APLLAVPG----RTYPVELYYTPE-----------------------FQ---------RDYL 287 (773)
T ss_dssp SCCHHHHHHTTS------CCEEECCC----CCCCEEEECCSS-----------------------CC---------SCHH
T ss_pred CCHHHHHHHHCC------CCCCCCCC----CCCCEEEEEECC-----------------------CC---------HHHH
T ss_conf 568999998468------98545368----655538898068-----------------------82---------4599
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCC---------CCCCCEEEEECCCCCHHHHHHHHHHCC----
Q ss_conf 9999999999840888798789990889999999998248---------799958999639999999999987205----
Q 001758 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP---------LSSFFKVHILHSSVDTEQALMAMKICK---- 325 (1017)
Q Consensus 259 ~li~~lv~~i~~~~~~~~g~ILVFlps~~~ie~l~~~L~~---------~~~~~~v~~lHs~l~~~~r~~v~~~f~---- 325 (1017)
+.....+..++.... +|++|||++++.+++.+++.|.. ...++.+.++||+++.++|..+++.|+
T Consensus 288 ~~~l~~l~~~~~~~~--~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 288 DSAIRTVLQIHATEE--AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp HHHHHHHHHHHHHSC--SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred HHHHHHHHHHHHHCC--CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 999999999997268--999899899899999999999998876313456797599980789999999999852643457
Q ss_pred -CCC-EEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCEEECCHHHHHHHCCCCCCCCCCCEEEEECHHHH
Q ss_conf -996-899984743125457991199938863115624788865442243188329985499897899819997331013
Q 001758 326 -SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1017)
Q Consensus 326 -~~r-kIIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QRaGRAGR~~~G~cyrLys~~~~ 403 (1017)
.|. +||||||++|+|||||+|++|||+|+.|.+.||+..+++.+.++|+|++++.||+|||||..+|+||+||+++++
T Consensus 366 ~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 366 GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445 (773)
T ss_dssp SSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHH
T ss_pred CCCCEEEEEECCHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHH
T ss_conf 88834999967679847676873799947972212225666832033001799999865344478999879999637884
Q ss_pred -CCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf -0112368833462359999999971002467894786210169999740788999999741001379999654450120
Q 001758 404 -GTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGR 482 (1017)
Q Consensus 404 -~~l~~~~~PEI~r~~L~~~iL~l~~~~~~~l~~~~~~l~~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~ 482 (1017)
+.+.++..|||+|.+|..++|+++.++ ++++.. |+|++||+.+++..|++.|.++||||++ | ++|++|+
T Consensus 446 ~~~l~~~~~pEi~r~~L~~~~L~l~~~g---i~~~~~--f~~~~~p~~~~i~~a~~~L~~lgald~~---~--~lT~lG~ 515 (773)
T 2xau_A 446 QKELIEQSYPEILRSNLSSTVLELKKLG---IDDLVH--FDFMDPPAPETMMRALEELNYLACLDDE---G--NLTPLGR 515 (773)
T ss_dssp HHTSCSSCCCGGGGSCCHHHHHHHHHTT---CCCGGG--CCCSSCCCHHHHHHHHHHHHHTTSBCTT---S--CBCHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCCHHH--CCCCCCCCHHHHHHHHHHHHHCCCCCCC---C--CCCHHHH
T ss_conf 0123016897533475899999999849---997232--4355798599999999999976876557---8--8683056
Q ss_pred HHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 21026778688999997002373146899998731599864589873488997607654788960001331034687779
Q 001758 483 LLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNL 562 (1017)
Q Consensus 483 ~la~lPldp~la~~Ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~l~~l 562 (1017)
.|+.||+||++++||+.+..++|+.++++|+|||++++ +|++|.+++++++..+..|.+++|| |++++
T Consensus 516 ~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~-~f~~~~~~~~~~~~~~~~f~~~~~D-----------~~~~l 583 (773)
T 2xau_A 516 LASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKRADDAKNIFAHPDGD-----------HITLL 583 (773)
T ss_dssp HHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCC-CBCCCTTCHHHHHHHHHTTCCTTBH-----------HHHHH
T ss_pred HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCC-----------HHHHH
T ss_conf 42433688899999986212474168999999603688-5518747899999999850688985-----------99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999999999974333334321000000014581325-9999960399888999999999999999870987445789998
Q 001758 563 CAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIE-EEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLP 641 (1017)
Q Consensus 563 ~af~~w~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~wC~~~fLs~~~l~~~~~ir~qL~~~l~~~~~~~~~~~~~~~ 641 (1017)
|+|+.|..... .+.. ++||++|||++++|++|.++|.||.+++.++++...+.....+
T Consensus 584 ~~~~~~~~~~~---------------------~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~ 642 (773)
T 2xau_A 584 NVYHAFKSDEA---------------------YEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESP 642 (773)
T ss_dssp HHHHHHTSHHH---------------------HHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTST
T ss_pred HHHHHHHHHCC---------------------CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 99999987022---------------------210689999983889999999999999999998742887577777732
Q ss_pred C------------CC------C---C-CC--------HHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC------
Q ss_conf 7------------67------8---8-30--------122-210137999777532113467799633531023------
Q 001758 642 T------------YY------D---P-YE--------FEH-TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA------ 684 (1017)
Q Consensus 642 ~------------~~------~---~-~~--------~~h-~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~------ 684 (1017)
. |+ . . |. +.| ...+...++|++|++++.|+ ++|+|.|+.
T Consensus 643 ~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~~e~~~t~----~~~~~~~~~i~~~~l 718 (773)
T 2xau_A 643 KYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTS----KNYIRTVTSVRPEWL 718 (773)
T ss_dssp THHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEEEEEEESS----SEEEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHCHHHHEEECCCCCCCEEEECCCEEEECCCCCCCCCCCEEEEEEEECCC----HHHEEECCCCCHHHH
T ss_conf 0699999999986737551434678741573379779988986467998989999862024----424244160799999
Q ss_pred ----CCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf ----68547674565157889998999864213
Q 001758 685 ----VPFVAPNQFQSNNVAEKLASIIKEIRVQY 713 (1017)
Q Consensus 685 ----~py~~~~~f~~~e~k~~L~kiiKe~r~~~ 713 (1017)
|+|+...+|+.++.++.++++.+++....
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (773)
T 2xau_A 719 IEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLN 751 (773)
T ss_dssp HHHCTTTSCGGGCCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 998787622041783558999999999753111
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=460.37 Aligned_cols=465 Identities=15% Similarity=0.082 Sum_probs=325.7
Q ss_pred CCHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCEEEECCHHHHHHHHHHHHHH--HCCCCCCCEE
Q ss_conf 953999999999-9829919999089981869999999854---998599956389999999999994--3188469722
Q 001758 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAK--GRNCELGGEV 100 (1017)
Q Consensus 27 Pi~~~Q~eil~~-i~~~~~vII~apTGSGKTtqip~~lle~---~~~~IivtqPrrlaa~s~a~rva~--e~~~~lg~~V 100 (1017)
.++++|.++++. +.++++++|+||||||||+++++++++. ...++++++|++.++.+++.++.. ..+..++..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 79999999999986489948998489875999999999999997798499990859999999999987652798899984
Q ss_pred EEEECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECC-
Q ss_conf 6742045456899739998789999999805988567508998053212333107999999998518996199972126-
Q 001758 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA- 179 (1017)
Q Consensus 101 Gy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~s~IIIDEaHER~~~~D~ll~~Lk~ll~~r~dlkiIlmSATl- 179 (1017)
|+..+.++.. ..++|+|+|||+|++.+..+...+.++++|||||+|+.. + +.....++.++.+.+++++|+||||+
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~-~~~~~~l~~i~~~~~~~~ii~lSATl~ 186 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-D-PERGPVVESVTIRAKRRNLLALSATIS 186 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-C-TTTHHHHHHHHHHHHTSEEEEEESCCT
T ss_pred CCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECHHHCC-C-CCCCHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 8977762013-799999985899999996785576436989995355527-8-662229999998653672899717879
Q ss_pred CHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 94789999864299841489971688843033437412777888731577885211112346999997532246555899
Q 001758 180 DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHK 259 (1017)
Q Consensus 180 d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~i~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 259 (1017)
+.+.+++|++. +++..+.+ .++....+.... .........|........ .......
T Consensus 187 n~~~~~~~l~~-------~~~~~~~r----~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~---~~~~~~~- 242 (715)
T 2va8_A 187 NYKQIAKWLGA-------EPVATNWR----PVPLIEGVIYPE---------RKKKEYNVIFKDNTTKKV---HGDDAII- 242 (715)
T ss_dssp THHHHHHHHTC-------EEEECCCC----SSCEEEEEEEEC---------SSTTEEEEEETTSCEEEE---ESSSHHH-
T ss_pred CHHHHHHHHCC-------CCCCCCCC----CCCCEEEEEECC---------CCCCCEEEECCCCHHHHC---CCCHHHH-
T ss_conf 99999998499-------74579999----887468888358---------766540465276044321---3443899-
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCC----------------------------------CEE
Q ss_conf 9999999998408887987899908899999999982487999----------------------------------589
Q 001758 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF----------------------------------FKV 305 (1017)
Q Consensus 260 li~~lv~~i~~~~~~~~g~ILVFlps~~~ie~l~~~L~~~~~~----------------------------------~~v 305 (1017)
..+..... . ++++|||++++++++.++..|...... ..+
T Consensus 243 ---~~~~~~~~--~--~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 243 ---AYTLDSLS--K--NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp ---HHHHHHHT--T--TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred ---HHHHHHHH--C--CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCE
T ss_conf ---99999986--6--9977999798899999999999987654288677899999999866345532299999996687
Q ss_pred EEECCCCCHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCEEECCHHHHHHHCC
Q ss_conf 99639999999999987205996-89998474312545799119993886311562478886544224318832998549
Q 001758 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (1017)
Q Consensus 306 ~~lHs~l~~~~r~~v~~~f~~~r-kIIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QRaG 384 (1017)
.++||+++.++|..+++.|+.|. +|||||+++|+|||+|++++||++ ..+||+..+.. ..|+|.+++.||+|
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSG 388 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHT
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCEEEEEEC----CEECCCCCCCC---CCCCCHHHHHHHHH
T ss_conf 887899999999999999986998599978087661688854999918----75644667778---77599999999842
Q ss_pred CCCCCC---CCCEEEEECHHH-HCCCC---CCCCCHHHHCCHHH------HHHHHHHHCC-CCCCCHHHHHH-HCCC-CC
Q ss_conf 989789---981999733101-30112---36883346235999------9999971002-46789478621-0169-99
Q 001758 385 RTGRTC---DGQVYRLVTKSF-FGTLE---DHECPAILRLSLRL------QVLLICCAES-KAISDPKVLLQ-KALD-PP 448 (1017)
Q Consensus 385 RAGR~~---~G~cyrLys~~~-~~~l~---~~~~PEI~r~~L~~------~iL~l~~~~~-~~l~~~~~~l~-~~l~-pP 448 (1017)
||||.+ +|.||+++++.+ +..+. ....||+.+++|.. .+|.+..++. ....+...++. .|+. +|
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~ 468 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQL 468 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHH
T ss_pred HCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 42799888875699996780679999999970899873533786667999999998515668899999999850787642
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9740788999999741001379999654450120210267786889999970023---7314689999873159986458
Q 001758 449 YPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI---GMLREGILLGILMDTQPLPILH 525 (1017)
Q Consensus 449 ~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~la~lPldp~la~~Ll~~~~~---gc~~e~l~Iaa~ls~~~~~~~~ 525 (1017)
+...+..+++.|.++|+|+.++ +...+|++|+.|+.+|++|+.+++++.+... .|..+++.|+++.+..+.++.+
T Consensus 469 ~~~~~~~al~~L~~~g~i~~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r 546 (715)
T 2va8_A 469 VDVYFDRAIRWLLEHSFIKEEG--NTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVG 546 (715)
T ss_dssp HHHHHHHHHHHHHHTTSEEECS--SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCC
T ss_pred CHHHHHHHHHHHHHCCCEEECC--CEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 6388999999998884976669--86866768999999748986799999986542578789999995268433457648
Q ss_pred CCCCHHHHH
Q ss_conf 987348899
Q 001758 526 PFGDDALFA 534 (1017)
Q Consensus 526 P~~~~~~a~ 534 (1017)
|.+.+...+
T Consensus 547 ~~e~~~l~~ 555 (715)
T 2va8_A 547 RNEEEELIE 555 (715)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 678999999
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=437.20 Aligned_cols=450 Identities=16% Similarity=0.158 Sum_probs=324.5
Q ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCC--CCCEEEECCHHHHHHHHHHHHHH--HCCCCCCCEEEE
Q ss_conf 95399999999998299199990899818699999998549--98599956389999999999994--318846972267
Q 001758 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAK--GRNCELGGEVGY 102 (1017)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTtqip~~lle~~--~~~IivtqPrrlaa~s~a~rva~--e~~~~lg~~VGy 102 (1017)
.++++|.++++.+.++++++++||||||||+++++++++.. ..++++++|++.++.+.++++.. ..+..++..+|+
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~ 104 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGD 104 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 89999999999983899689986896179999999999999868959999370999999999999777049889998388
Q ss_pred EECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCC-----CCCCCCHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 4204545689973999878999999980598856750899805321-----23331079999999985189961999721
Q 001758 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE-----RSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1017)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~s~IIIDEaHE-----R~~~~D~ll~~Lk~ll~~r~dlkiIlmSA 177 (1017)
..+.++. ...++|+|+|||++.+.+..+...+.++++|||||+|+ |+...+.++..++ ..++++++|+|||
T Consensus 105 ~~~~~~~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~~~~ii~lSA 180 (702)
T 2p6r_A 105 YESRDEH-LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR---RMNKALRVIGLSA 180 (702)
T ss_dssp CBCCSSC-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH---HHCTTCEEEEEEC
T ss_pred CCCCHHH-CCCCCEEEECHHHHHHHHHCCHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHH---HCCCCCEEEEECC
T ss_conf 7766435-26999999898999999975755776259898850255478776527999999998---4386765999788
Q ss_pred CCC-HHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 269-4789999864299841489971688843033437412777888731577885211112346999997532246555
Q 001758 178 TAD-ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (1017)
Q Consensus 178 Tld-~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~i~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (1017)
|++ .+.+++|++. +++..+.+ .++....+... .. ..+...... ......
T Consensus 181 Tl~n~~~~~~~l~~-------~~~~~~~r----~~~l~~~~~~~------------~~---~~~~~~~~~--~~~~~~-- 230 (702)
T 2p6r_A 181 TAPNVTEIAEWLDA-------DYYVSDWR----PVPLVEGVLCE------------GT---LELFDGAFS--TSRRVK-- 230 (702)
T ss_dssp CCTTHHHHHHHTTC-------EEEECCCC----SSCEEEEEECS------------SE---EEEEETTEE--EEEECC--
T ss_pred CCCCHHHHHHHHCC-------CCCCCCCC----CCCCEEEEEEC------------CE---EECCCCCHH--HHHHHH--
T ss_conf 76899999998489-------72368887----76646888617------------82---310576301--444546--
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCC----------------------------CCEEEEE
Q ss_conf 899999999999840888798789990889999999998248799----------------------------9589996
Q 001758 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS----------------------------FFKVHIL 308 (1017)
Q Consensus 257 ~~~li~~lv~~i~~~~~~~~g~ILVFlps~~~ie~l~~~L~~~~~----------------------------~~~v~~l 308 (1017)
.. ..+...... ++++|||++++++++.++..|..... +..+.++
T Consensus 231 ~~----~~~~~~~~~----~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~ 302 (702)
T 2p6r_A 231 FE----ELVEECVAE----NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFH 302 (702)
T ss_dssp HH----HHHHHHHHT----TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEE
T ss_pred HH----HHHHHHHHC----CCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEE
T ss_conf 99----999999966----9978998388789999999999998764695889999986245532199999984692886
Q ss_pred CCCCCHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCEEECCHHHHHHHCCCCC
Q ss_conf 39999999999987205996-89998474312545799119993886311562478886544224318832998549989
Q 001758 309 HSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG 387 (1017)
Q Consensus 309 Hs~l~~~~r~~v~~~f~~~r-kIIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QRaGRAG 387 (1017)
||+++.++|..+++.|+.|. +|||||+++|+|||+|++++||++ ..+|| +. ..|+|.+++.||+||||
T Consensus 303 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBS
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECC----CEEEC---CC----CCCCCHHHHHHHHHHCC
T ss_conf 699999999999999987998499978388665788733999847----62307---87----77589999999843327
Q ss_pred CCC---CCCEEEEECHHHHCCCCC---CCCCHHHHCCHHH------HHHHHHHHCC-CCCCCHHHHHH-HCC----CCCC
Q ss_conf 789---981999733101301123---6883346235999------9999971002-46789478621-016----9999
Q 001758 388 RTC---DGQVYRLVTKSFFGTLED---HECPAILRLSLRL------QVLLICCAES-KAISDPKVLLQ-KAL----DPPY 449 (1017)
Q Consensus 388 R~~---~G~cyrLys~~~~~~l~~---~~~PEI~r~~L~~------~iL~l~~~~~-~~l~~~~~~l~-~~l----~pP~ 449 (1017)
|.+ +|.||+++++.+++.+.+ ...||+.+++|.. .++.+...+. ....+...++. .|+ ++|.
T Consensus 372 R~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~ 451 (702)
T 2p6r_A 372 RPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL 451 (702)
T ss_dssp CTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC
T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999873699995573189999999608998846516860558999999997177888999999998506777501789
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCC--CCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 740788999999741001379999654450120210267786889999970023--731468999987315998645898
Q 001758 450 PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI--GMLREGILLGILMDTQPLPILHPF 527 (1017)
Q Consensus 450 ~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~la~lPldp~la~~Ll~~~~~--gc~~e~l~Iaa~ls~~~~~~~~P~ 527 (1017)
.+.+..+++.|.++|+|+.+ +...+|++|+.|+.+|++|+.+++++.+... .|..+++.|+++.+..+..+.++.
T Consensus 452 ~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~ 528 (702)
T 2p6r_A 452 SYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKT 528 (702)
T ss_dssp HHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTT
T ss_pred HHHHHHHHHHHHHCCCEEEC---CEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999988594289---906648699999998578989999999743046878999999537744445777876
Q ss_pred CCHHHH
Q ss_conf 734889
Q 001758 528 GDDALF 533 (1017)
Q Consensus 528 ~~~~~a 533 (1017)
+ +...
T Consensus 529 e-~~~~ 533 (702)
T 2p6r_A 529 D-SWVE 533 (702)
T ss_dssp T-HHHH
T ss_pred H-HHHH
T ss_conf 5-9999
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=416.09 Aligned_cols=449 Identities=14% Similarity=0.114 Sum_probs=309.3
Q ss_pred CCCHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 9953999999999-98299199990899818699999998549---9859995638999999999999431884697226
Q 001758 26 LPVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1017)
Q Consensus 26 LPi~~~Q~eil~~-i~~~~~vII~apTGSGKTtqip~~lle~~---~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VG 101 (1017)
-.++++|.++++. +.++++++++||||||||++++.++++.. ..++++++|++.++.+++++++.. . ..|..|+
T Consensus 22 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l-~-~~g~~v~ 99 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDW-E-KIGLRVA 99 (720)
T ss_dssp CBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGG-G-GGTCCEE
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH-H-HCCCEEE
T ss_conf 8899999999999855799489986996379999999999999867998999859699999999999988-7-3597799
Q ss_pred EEEC---CCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCC-----CCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 7420---454568997399987899999998059885675089980532-----12333107999999998518996199
Q 001758 102 YHIG---HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH-----ERSVESDLVLVCVKQLLLKKNDLRVV 173 (1017)
Q Consensus 102 y~v~---~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~s~IIIDEaH-----ER~~~~D~ll~~Lk~ll~~r~dlkiI 173 (1017)
..++ .+......++|+|+|||++.+.+..+...+.++++|||||+| +|+...+.++..++ .+.++|
T Consensus 100 ~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~~~~ii 173 (720)
T 2zj8_A 100 MATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------GKAQII 173 (720)
T ss_dssp EECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------TTBEEE
T ss_pred EECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHH------CCCEEE
T ss_conf 96389776412147999999888999999975714665279899989855678764479999999864------077699
Q ss_pred EEEECC-CHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 972126-9478999986429984148997168884303343741277788873157788521111234699999753224
Q 001758 174 LMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (1017)
Q Consensus 174 lmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~i~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1017)
+||||+ +.+.+++|++. +.+..+.+ .++....+..+ .. ..+..... .
T Consensus 174 ~lSATl~n~~~~~~~l~~-------~~~~~~~r----p~~l~~~~~~~------------~~---~~~~~~~~------~ 221 (720)
T 2zj8_A 174 GLSATIGNPEELAEWLNA-------ELIVSDWR----PVKLRRGVFYQ------------GF---VTWEDGSI------D 221 (720)
T ss_dssp EEECCCSCHHHHHHHTTE-------EEEECCCC----SSEEEEEEEET------------TE---EEETTSCE------E
T ss_pred EECCCCCCHHHHHHHHCC-------CCCCCCCC----CCCCEEEEEEC------------CE---EECCCCCH------H
T ss_conf 975886899999998298-------60378988----87636889757------------81---31165320------0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCC-------------------------------
Q ss_conf 6555899999999999840888798789990889999999998248799-------------------------------
Q 001758 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS------------------------------- 301 (1017)
Q Consensus 253 ~~~~~~~li~~lv~~i~~~~~~~~g~ILVFlps~~~ie~l~~~L~~~~~------------------------------- 301 (1017)
...... ..+.+.... ++++|||++++++++.++..|.....
T Consensus 222 ~~~~~~----~~~~~~~~~----~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 293 (720)
T 2zj8_A 222 RFSSWE----ELVYDAIRK----KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAI 293 (720)
T ss_dssp ECSSTT----HHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 016999----999999867----998899965879999999999999987459066899999999875166508899998
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCEEECCHHHHH
Q ss_conf 958999639999999999987205996-8999847431254579911999388631156247888654422431883299
Q 001758 302 FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE 380 (1017)
Q Consensus 302 ~~~v~~lHs~l~~~~r~~v~~~f~~~r-kIIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~ 380 (1017)
...+.++|++++.++|..+++.|+.|. +|||||+++++|||+|++++||+.+ .+|| .. ...|+|.+++.
T Consensus 294 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~-----g~~~~s~~~~~ 363 (720)
T 2zj8_A 294 RGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DF-----GMERIPIIEVH 363 (720)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SS-----SCEECCHHHHH
T ss_pred HCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECCC----EEEC-CC-----CCCCCCHHHHH
T ss_conf 51946324899999999999999779975999881866628888528998487----2406-88-----87608999999
Q ss_pred HHCCCCCCCC---CCCEEEEECHHHHC----CCCCCCCCHHHHC-----CHHHHHHHHHHHCC-CCCCCHHHHH-HHCC-
Q ss_conf 8549989789---98199973310130----1123688334623-----59999999971002-4678947862-1016-
Q 001758 381 QRRGRTGRTC---DGQVYRLVTKSFFG----TLEDHECPAILRL-----SLRLQVLLICCAES-KAISDPKVLL-QKAL- 445 (1017)
Q Consensus 381 QRaGRAGR~~---~G~cyrLys~~~~~----~l~~~~~PEI~r~-----~L~~~iL~l~~~~~-~~l~~~~~~l-~~~l- 445 (1017)
||+|||||.+ +|.||+++++..++ .+.....+++... .|...++.+...+. ....+...++ +.|+
T Consensus 364 Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~ 443 (720)
T 2zj8_A 364 QMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYA 443 (720)
T ss_dssp HHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHH
T ss_pred HHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHH
T ss_conf 98754489988887669999667109999999961899871765686043999999999717788999999999827687
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCC----CCHHHHHHHHHH
Q ss_conf -----9999740788999999741001-379999654450120210267786889999970023----731468999987
Q 001758 446 -----DPPYPEVVGDALDLLDHKRALQ-KISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI----GMLREGILLGIL 515 (1017)
Q Consensus 446 -----~pP~~~~i~~al~~L~~lgal~-~~~~~g~~~lT~lG~~la~lPldp~la~~Ll~~~~~----gc~~e~l~Iaa~ 515 (1017)
+++..+.+..+++.|.+.|+|+ +.+ +.+.+|++|+.|+.+|++|..+++++.+... +|..+++.|+|+
T Consensus 444 ~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 521 (720)
T 2zj8_A 444 YQRKDTYSLEEKIRNILYFLLENEFIEISLE--DKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISL 521 (720)
T ss_dssp HHCSCCHHHHHHHHHHHHHHHHTTSEEECTT--SCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCEEECCC--CCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 7436457899999999999998879357789--82755769999999738999999999998764258988899997505
Q ss_pred HCCCCCCCCCCCCCHHHHH
Q ss_conf 3159986458987348899
Q 001758 516 MDTQPLPILHPFGDDALFA 534 (1017)
Q Consensus 516 ls~~~~~~~~P~~~~~~a~ 534 (1017)
++..+..+++|.+.+...+
T Consensus 522 ~~e~~~i~~r~~e~~~l~~ 540 (720)
T 2zj8_A 522 TPDITPFNYSKREFERLEE 540 (720)
T ss_dssp STTCCCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHH
T ss_conf 8532126637778999999
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=332.59 Aligned_cols=468 Identities=15% Similarity=0.154 Sum_probs=287.7
Q ss_pred CCCCCCCCCC----CHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHH----C---------CCCCEEEECCHHH
Q ss_conf 9945768999----5399999999998-2991999908998186999999985----4---------9985999563899
Q 001758 18 FTSPEFSSLP----VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLLA----E---------NMEPILCTQPRRF 79 (1017)
Q Consensus 18 ~~~~~r~~LP----i~~~Q~eil~~i~-~~~~vII~apTGSGKTtqip~~lle----~---------~~~~IivtqPrrl 79 (1017)
.|...+..+| +++.|.++++.+. .+++++|+||||||||...-..++. . ...+++++.|.+.
T Consensus 66 Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kA 145 (1724)
T 4f92_B 66 LPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRS 145 (1724)
T ss_dssp SCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHH
T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHH
T ss_conf 59988874478999999999999999758993999968814699999999999998623434444579988999899799
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCC---CCCCCCCEEEECHHHHHHHHHHCCC--CCCCCEEEEEECCC----CCC
Q ss_conf 99999999994318846972267420454---5689973999878999999980598--85675089980532----123
Q 001758 80 AVVAVAKMVAKGRNCELGGEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVH----ERS 150 (1017)
Q Consensus 80 aa~s~a~rva~e~~~~lg~~VGy~v~~~~---~~~~~t~Iiv~T~g~Ll~~l~~~~l--~l~~~s~IIIDEaH----ER~ 150 (1017)
++.+....+...++ .+|..|+...+... .....++|+|+|||.+...+..... .+.++++|||||+| +|+
T Consensus 146 La~e~~~~l~~~~~-~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG 224 (1724)
T 4f92_B 146 LVQEMVGSFGKRLA-TYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRG 224 (1724)
T ss_dssp HHHHHHHHHHHHHT-TTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTH
T ss_pred HHHHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCH
T ss_conf 99999999997775-47988999979988871435899999988799999975885304454758899955544299567
Q ss_pred CCCCHHHHHHHH-HHHCCCCCEEEEEEECC-CHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCC
Q ss_conf 331079999999-98518996199972126-9478999986429984148997168884303343741277788873157
Q 001758 151 VESDLVLVCVKQ-LLLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVD 228 (1017)
Q Consensus 151 ~~~D~ll~~Lk~-ll~~r~dlkiIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~i~yl~~~~~~l~~~ 228 (1017)
...+.++..+++ .....+++++|+||||+ |.+.+++|++.. .+..+....... +..+.+..+
T Consensus 225 ~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~---~~~~~~~~~~~~--RPvpL~~~~----------- 288 (1724)
T 4f92_B 225 PVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVD---PAKGLFYFDNSF--RPVPLEQTY----------- 288 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCC---HHHHEEECCGGG--CSSCEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCC---CCCCEEEECCCC--CCCCCEEEE-----------
T ss_conf 9999999999999973799980999954569999999986788---888869979997--667317999-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCC---------
Q ss_conf 78852111123469999975322465558999999999998408887987899908899999999982487---------
Q 001758 229 HGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--------- 299 (1017)
Q Consensus 229 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~ILVFlps~~~ie~l~~~L~~~--------- 299 (1017)
.... . .......+.+.+.+........ .++++|||++++..++.+++.|...
T Consensus 289 ------------~~~~-~-----~~~~~~~~~~~~~~~~~v~~~~-~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~ 349 (1724)
T 4f92_B 289 ------------VGIT-E-----KKAIKRFQIMNEIVYEKIMEHA-GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGL 349 (1724)
T ss_dssp ------------CEEC-C-----CCHHHHHHHHHHHHHHHHTTCC-SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTC
T ss_pred ------------ECCC-C-----CCHHHHHHHHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf ------------6568-7-----5414566778899999999975-6996899878889999999999998764552122
Q ss_pred --------------------------CCCCEEEEECCCCCHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf --------------------------99958999639999999999987205996-899984743125457991199938
Q 001758 300 --------------------------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDS 352 (1017)
Q Consensus 300 --------------------------~~~~~v~~lHs~l~~~~r~~v~~~f~~~r-kIIVATniaEtGItIP~V~~VIDs 352 (1017)
.-..+|.+|||+|+.++|..+++.|+.|. +|||||++++.|||+|++++||..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~ 429 (1724)
T 4f92_B 350 FLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG 429 (1724)
T ss_dssp CSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC
T ss_pred HCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCEEEEEC
T ss_conf 13333057888776640244488999864577887599999999999999877997499984266713888870699828
Q ss_pred CCCCEEEECCCCCCCCCCEEECCHHHHHHHCCCCCCCC---CCCEEEEECHHHH---CCCCCCCCC-H-HHHCCHHHHHH
Q ss_conf 86311562478886544224318832998549989789---9819997331013---011236883-3-46235999999
Q 001758 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSFF---GTLEDHECP-A-ILRLSLRLQVL 424 (1017)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~ISkasa~QRaGRAGR~~---~G~cyrLys~~~~---~~l~~~~~P-E-I~r~~L~~~iL 424 (1017)
..+||+..+. ..++|.+++.||+|||||.+ .|.++.+.++++. ..+.....| | .+...+...++
T Consensus 430 ----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~ 501 (1724)
T 4f92_B 430 ----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLN 501 (1724)
T ss_dssp ----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHH
T ss_pred ----CEEECCCCCC----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHCCCCHHHHHH
T ss_conf ----8770476787----56389999987640126888887647999835025999999974998510203310788999
Q ss_pred HHHHHCCCCCCCH---HHHHH-------------------------HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9971002467894---78621-------------------------0169999740788999999741001379999654
Q 001758 425 LICCAESKAISDP---KVLLQ-------------------------KALDPPYPEVVGDALDLLDHKRALQKISPRGRYE 476 (1017)
Q Consensus 425 ~l~~~~~~~l~~~---~~~l~-------------------------~~l~pP~~~~i~~al~~L~~lgal~~~~~~g~~~ 476 (1017)
.-..++ .+.+. ..++. +.++....+.+..++..|.+.|.+..+...|.+.
T Consensus 502 aeI~~g--~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~ 579 (1724)
T 4f92_B 502 AEIVLG--NVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQ 579 (1724)
T ss_dssp HHHHHT--SCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEE
T ss_pred HHHHHH--HCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 999870--247899999999643788775327465436710012363789999999999999998879901406778643
Q ss_pred CCCCHHHHCCCCCCHHHHHHHHHCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 450120210267786889999970023731-4689999873159986458987348
Q 001758 477 PTFYGRLLASFSLSFDASVLVLKFGEIGML-REGILLGILMDTQPLPILHPFGDDA 531 (1017)
Q Consensus 477 lT~lG~~la~lPldp~la~~Ll~~~~~gc~-~e~l~Iaa~ls~~~~~~~~P~~~~~ 531 (1017)
+|++|++|+++++++..++.+.....-.+. .+++.+.++.+.......+..++.+
T Consensus 580 ~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~ 635 (1724)
T 4f92_B 580 VTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLE 635 (1724)
T ss_dssp ECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHH
T ss_conf 44487999983689999999986358889999999997577521667707789999
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=331.62 Aligned_cols=453 Identities=13% Similarity=0.103 Sum_probs=285.3
Q ss_pred CHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHH----HCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 5399999999998-299199990899818699999998----54998599956389999999999994318846972267
Q 001758 28 VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 28 i~~~Q~eil~~i~-~~~~vII~apTGSGKTtqip~~ll----e~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
.++.|.+++..+. .+++++|+||||||||+.....++ +...++++++.|.|.++.+....+...++..+|..|+.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCHHCCCEEEE
T ss_conf 99799999999966899689993798874699999999999858998799986829999999999999844220978999
Q ss_pred EECCCC---CCCCCCCEEEECHHHHHHHHHHC--CCCCCCCEEEEEECCCC----CCCCCCHHHHHHHHHHH-CCCCCEE
Q ss_conf 420454---56899739998789999999805--98856750899805321----23331079999999985-1899619
Q 001758 103 HIGHSK---HLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHE----RSVESDLVLVCVKQLLL-KKNDLRV 172 (1017)
Q Consensus 103 ~v~~~~---~~~~~t~Iiv~T~g~Ll~~l~~~--~l~l~~~s~IIIDEaHE----R~~~~D~ll~~Lk~ll~-~r~dlki 172 (1017)
..+... .....++|+|+|||.+...++.. ...+.++++|||||+|. |+...+.++..++.+.. ..++.|+
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ri 1086 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRI 1086 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred EECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97997812111589999998879999998384446413523189701011047878763999999999998636888639
Q ss_pred EEEEECC-CHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9972126-947899998642998414899716888430334374127778887315778852111123469999975322
Q 001758 173 VLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1017)
Q Consensus 173 IlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~i~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1017)
|+||||+ |++.+++|++.-.. .+..+....++ .+.+.+. ..+. ...
T Consensus 1087 I~lSATl~N~~dla~WL~~~~~--~~~~~~~~~RP----vpL~~~i--------------------~~~~---~~~---- 1133 (1724)
T 4f92_B 1087 VALSSSLSNAKDVAHWLGCSAT--STFNFHPNVRP----VPLELHI--------------------QGFN---ISH---- 1133 (1724)
T ss_dssp EEEESCBTTHHHHHHHHTCCST--TEEECCGGGCS----SCEEEEE--------------------EEEC---CCS----
T ss_pred EEEECCCCCHHHHHHHHCCCCC--CEEEECCCCCC----CCEEEEE--------------------EECC---CCC----
T ss_conf 9992888999999998679987--75894888888----8708999--------------------8036---777----
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCC-------------------------C------
Q ss_conf 465558999999999998408887987899908899999999982487-------------------------9------
Q 001758 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-------------------------S------ 300 (1017)
Q Consensus 252 ~~~~~~~~li~~lv~~i~~~~~~~~g~ILVFlps~~~ie~l~~~L~~~-------------------------~------ 300 (1017)
...............+....+ ++++|||++++..++..+..|... .
T Consensus 1134 -~~~~~~~~~~~~~~~i~~~~~--~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~ 1210 (1724)
T 4f92_B 1134 -TQTRLLSMAKPVYHAITKHSP--KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKE 1210 (1724)
T ss_dssp -HHHHHHTTHHHHHHHHHHHCS--SSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHH
T ss_pred -CHHHHHHHCCHHHHHHHHHCC--CCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHH
T ss_conf -166665320149999998537--99721557888999999999998876264302220133999999986414288999
Q ss_pred -CCCEEEEECCCCCHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCEEECCHHH
Q ss_conf -9958999639999999999987205996-89998474312545799119993886311562478886544224318832
Q 001758 301 -SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQ 378 (1017)
Q Consensus 301 -~~~~v~~lHs~l~~~~r~~v~~~f~~~r-kIIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~ISkas 378 (1017)
...+|.+||++|+.++|..+++.|+.|. +|||||++++.|||+|++.+||..- .+||... ....+.|..+
T Consensus 1211 ~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~----~~~~~~s~~~ 1282 (1724)
T 4f92_B 1211 TLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT----QYYNGKI----HAYVDYPIYD 1282 (1724)
T ss_dssp HHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECS----EEEETTT----TEEEECCHHH
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCEEEEECC----CCCCCCC----CCCCCCCHHH
T ss_conf 8747889977999999999999999779984999886997578988618999567----1136755----5667799999
Q ss_pred HHHHCCCCCCCC---CCCEEEEECHHHH---CCCCCCCCCHHHHCCH----HHHHHHHHHHCCCCCCCHH---HHHH-HC
Q ss_conf 998549989789---9819997331013---0112368833462359----9999999710024678947---8621-01
Q 001758 379 AEQRRGRTGRTC---DGQVYRLVTKSFF---GTLEDHECPAILRLSL----RLQVLLICCAESKAISDPK---VLLQ-KA 444 (1017)
Q Consensus 379 a~QRaGRAGR~~---~G~cyrLys~~~~---~~l~~~~~PEI~r~~L----~~~iL~l~~~~~~~l~~~~---~~l~-~~ 444 (1017)
+.||+|||||.+ .|.|+.++..... ..+... |+..++.| ...++..... ..+.+.. .++. .|
T Consensus 1283 ~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~--~~pveS~L~~~l~~~l~~eI~~--~~i~~~~d~~~~l~~Tf 1358 (1724)
T 4f92_B 1283 VLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE--PLPVESHLDHCMHDHFNAEIVT--KTIENKQDAVDYLTWTF 1358 (1724)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS--CBCCCCCGGGSCHHHHHHHHHT--TSCCBHHHHHHHHTTSS
T ss_pred HHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCC--CCCEEEECCCCHHHHHHHHHHH--CCCCCHHHHHHHHHHHH
T ss_conf 9976151357887886289999654577899997379--9703545441117899999985--43488999999997307
Q ss_pred -------------C--------CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf -------------6--------9999740788999999741001379999654450120210267786889999970023
Q 001758 445 -------------L--------DPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI 503 (1017)
Q Consensus 445 -------------l--------~pP~~~~i~~al~~L~~lgal~~~~~~g~~~lT~lG~~la~lPldp~la~~Ll~~~~~ 503 (1017)
+ +..-.+.+..+++.|.+.|+|..+ .++.+.+|++|++++.++++|..++++..+...
T Consensus 1359 l~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~-~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~ 1437 (1724)
T 4f92_B 1359 LYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIE-DEMDVAPLNLGMIAAYYYINYTTIELFSMSLNA 1437 (1724)
T ss_dssp HHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEE-TTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCT
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCEEECHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 9998730732025665335567899999999999999988899986-998786668999999977899999999985443
Q ss_pred CCH-HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 731-46899998731599864589873
Q 001758 504 GML-REGILLGILMDTQPLPILHPFGD 529 (1017)
Q Consensus 504 gc~-~e~l~Iaa~ls~~~~~~~~P~~~ 529 (1017)
++. .+++.+.+.....+...++..+.
T Consensus 1438 ~~~~~~~L~il~~a~ef~~i~~R~~E~ 1464 (1724)
T 4f92_B 1438 KTKVRGLIEIISNAAEYENIPIRHHED 1464 (1724)
T ss_dssp TCCHHHHHHHHHTSGGGTTCCCCTTHH
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 698888998840784545664360689
No 7
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=1.00 E-value=1 Score=327.03 Aligned_cols=301 Identities=22% Similarity=0.193 Sum_probs=224.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 68999539999999999829919999089981869999999854998599956389999999999994318846972267
Q 001758 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTtqip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
+..||++.+|+++++.+.++++++++|+||||||+++++++++.+ .++++++|+|.+|.+++++++..++..++..+|+
T Consensus 213 r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g-~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~ 291 (666)
T 3o8b_A 213 TMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGV 291 (666)
T ss_dssp HHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT-CCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSS
T ss_pred HCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 025975999999999997698499991895149999999999789-9699996549999999999999859972589885
Q ss_pred EECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHH
Q ss_conf 42045456899739998789999999805988567508998053212333107999999998518996199972126947
Q 001758 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADIT 182 (1017)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~s~IIIDEaHER~~~~D~ll~~Lk~ll~~r~dlkiIlmSATld~~ 182 (1017)
.. .....+|+|+|||+|+ ....+.+.++++|||||||+++...+..+..+...+.......+++||||++..
T Consensus 292 ~~-----~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 292 RT-----ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp CE-----ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred EE-----CCCCCCEEEECCHHHH---HCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 76-----1589899998907887---488745475158998262324846799999999862412772699987889844
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 89999864299841489971688843033437412777888731577885211112346999997532246555899999
Q 001758 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIH 262 (1017)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~i~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~ 262 (1017)
+. ...+ ...++...+... . ........
T Consensus 364 -----i~---~~~p------------~i~~v~~~~~~~------------i-------------~~~~~~~~-------- 390 (666)
T 3o8b_A 364 -----VT---VPHP------------NIEEVALSNTGE------------I-------------PFYGKAIP-------- 390 (666)
T ss_dssp -----CC---CCCT------------TEEEEECBSCSS------------E-------------EETTEEEC--------
T ss_pred -----CC---CCCC------------CEEEEEECCCCH------------H-------------HHHHHHHH--------
T ss_conf -----45---6776------------147775023204------------6-------------78876434--------
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 99999984088879878999088999999999824879995899963999999999998720599689998474312545
Q 001758 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVT 342 (1017)
Q Consensus 263 ~lv~~i~~~~~~~~g~ILVFlps~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~~r~~v~~~f~~~rkIIVATniaEtGIt 342 (1017)
+ ... .++++|||++++++++.+++.|.. .++.+..+||+++.++ .++++++|||||+++|+|||
T Consensus 391 -----l-~~~--~~~~vLVFv~Tr~~ae~la~~L~~--~g~~v~~lHG~l~q~e------r~~~~~~VLVATdVaerGID 454 (666)
T 3o8b_A 391 -----I-EAI--RGGRHLIFCHSKKKCDELAAKLSG--LGINAVAYYRGLDVSV------IPTIGDVVVVATDALMTGYT 454 (666)
T ss_dssp -----G-GGS--SSSEEEEECSCHHHHHHHHHHHHT--TTCCEEEECTTSCGGG------SCSSSCEEEEECTTHHHHCC
T ss_pred -----H-HHC--CCCCEEEEECCHHHHHHHHHHHHH--CCCCEEEECCCCCHHH------HHHCCCCEEEECCHHHCCCC
T ss_conf -----5-540--699589996888999999999986--7993898608788999------97289849998974772677
Q ss_pred CCCEEEEEECCCCCEEE----ECCCCCCCCCCEEECCHHHHHHHCCCCCCCCCCCEEEEECHHHHC
Q ss_conf 79911999388631156----247888654422431883299854998978998199973310130
Q 001758 343 IPKVAYVIDSCRSLQVF----WDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1017)
Q Consensus 343 IP~V~~VIDsG~~k~~~----yd~~~~~~~l~~~~ISkasa~QRaGRAGR~~~G~cyrLys~~~~~ 404 (1017)
|| |++|||+|+.+..+ ||+..++.. ...|+|.+++.||+||+||..+|+ |.||++.+..
T Consensus 455 Id-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 455 GD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp CC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred CC-CCEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHCCCCCCCCCE-EEEEECCHHH
T ss_conf 89-758996676432211235553223223-557699999999863578899988-9998231310
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=326.05 Aligned_cols=355 Identities=15% Similarity=0.167 Sum_probs=239.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHC--CCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 68999539999999999829919999089981869999999854--9985999563899999999999943188469722
Q 001758 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1017)
Q Consensus 23 r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTtqip~~lle~--~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~V 100 (1017)
.-.++++++|.++++++.++++++++||||||||+++..+++.. ..++++++.|++.++.+.+.++....+ .|
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~V 254 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DV 254 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS-----SE
T ss_pred HCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHC-----CC
T ss_conf 4799999999999999976998899889999719999999999975597499990849999999999999828-----92
Q ss_pred EEEECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECC-
Q ss_conf 6742045456899739998789999999805988567508998053212333107999999998518996199972126-
Q 001758 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA- 179 (1017)
Q Consensus 101 Gy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~s~IIIDEaHER~~~~D~ll~~Lk~ll~~r~dlkiIlmSATl- 179 (1017)
|+. ..+....+.++|+|+|||+|++.+..+...+.++++||||||| +..+.++...+...+....++.++|+||||+
T Consensus 255 gll-tGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATip 332 (1108)
T 3l9o_A 255 GLM-TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIP 332 (1108)
T ss_dssp EEE-CSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCS
T ss_pred CEE-ECCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHH-HCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 189-6765268999989967699999997475432237899870021-20230068999999986477764999728889
Q ss_pred CHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEHH------------------H-HHHHHHCCC-CCCCCCCCCCC
Q ss_conf 947899998642998414899716888430334374127------------------7-788873157-78852111123
Q 001758 180 DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYL------------------E-QVTELLGVD-HGMTSELSSLR 239 (1017)
Q Consensus 180 d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~i~yl------------------~-~~~~~l~~~-~~~~~~~~~~~ 239 (1017)
+...+.+|+..... .++.++..+..+.. ...++. . .....+... ...........
T Consensus 333 n~~e~a~~l~~~~~-~~~~vi~~~~rp~p----l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (1108)
T 3l9o_A 333 NAMEFAEWICKIHS-QPCHIVYTNFRPTP----LQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTD 407 (1108)
T ss_dssp SCHHHHHHHHHHTC-SCEEEEEECCCSSC----EEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC------------
T ss_pred CHHHHHHHHHHHCC-CCEEEEECCCCCCC----CEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 87999999985158-98279834787554----06898624776425641442201156689999998754113321123
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCC------------------
Q ss_conf 46999997532246555899999999999840888798789990889999999998248799------------------
Q 001758 240 YCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS------------------ 301 (1017)
Q Consensus 240 y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~ILVFlps~~~ie~l~~~L~~~~~------------------ 301 (1017)
-....................+..++..+.... .+++|||++++..++.++..|.....
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~---~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 484 (1108)
T 3l9o_A 408 SRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKK---YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 484 (1108)
T ss_dssp -----------------CHHHHHHHHHHHHHTT---CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 433222234455544320568999999999628---99889995848789999999986469977789999999998875
Q ss_pred -------------------CCEEEEECCCCCHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCEEEEEECCCCCEEEEC
Q ss_conf -------------------958999639999999999987205996-899984743125457991199938863115624
Q 001758 302 -------------------FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWD 361 (1017)
Q Consensus 302 -------------------~~~v~~lHs~l~~~~r~~v~~~f~~~r-kIIVATniaEtGItIP~V~~VIDsG~~k~~~yd 361 (1017)
..+|.++||+|++.+|..+++.|+.|. +|||||+++++|||||++++||+ |+
T Consensus 485 ~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~--------~~ 556 (1108)
T 3l9o_A 485 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT--------SV 556 (1108)
T ss_dssp HHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEES--------CS
T ss_pred HCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEEE--------CC
T ss_conf 0464433005688787765157565258998999999999986799849998727765778787459996--------57
Q ss_pred CCCCCCCCCEEECCHHHHHHHCCCCCCCC---CCCEEEEECHHH
Q ss_conf 78886544224318832998549989789---981999733101
Q 001758 362 VNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSF 402 (1017)
Q Consensus 362 ~~~~~~~l~~~~ISkasa~QRaGRAGR~~---~G~cyrLys~~~ 402 (1017)
.+.+.. ...|+|.++|.||+|||||.+ .|.||.++++..
T Consensus 557 ~~~d~~--~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 557 RKWDGQ--QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp EEESSS--CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred CCCCCC--CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
T ss_conf 666864--456389999997636347789998559999955886
No 9
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=1.00 E-value=1 Score=314.61 Aligned_cols=354 Identities=16% Similarity=0.177 Sum_probs=230.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHH--HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9995399999999998299199990899818699--99999854998599956389999999999994318846972267
Q 001758 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1017)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTtq--ip~~lle~~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy 102 (1017)
.++++++|.++++.+.+++++++++|||||||+. ++.........+++++.|++.++.+++.++....+ +..++.
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~ 113 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIGL 113 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC---CCEEEE
T ss_conf 99999999999999984998999979998589999999999983598599995879999999999999769---983999
Q ss_pred EECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECC-CH
Q ss_conf 42045456899739998789999999805988567508998053212333107999999998518996199972126-94
Q 001758 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DI 181 (1017)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~s~IIIDEaHER~~~~D~ll~~Lk~ll~~r~dlkiIlmSATl-d~ 181 (1017)
..+ +......++|+|+|||+|+..+......+.++++||||||| +..+.++...+.+.+...+++.++|+||||+ +.
T Consensus 114 l~G-~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 114 ITG-DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNT 191 (997)
T ss_dssp ECS-SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTH
T ss_pred EEC-CCCCCCCCCEEEECHHHHHHHHHHCCHHHCCCCEEEEECCC-CCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCH
T ss_conf 968-98667999989988999999998181120578899998954-6666544899999998546688789976998976
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCEE---------EEEE---EEHHHH----HHHHHCCCCCCCC--CC--CCC---
Q ss_conf 78999986429984148997168884303---------3437---412777----8887315778852--11--112---
Q 001758 182 TKYRDYFRDLGRGERVEVLAIPSTNQRTI---------FQRR---VSYLEQ----VTELLGVDHGMTS--EL--SSL--- 238 (1017)
Q Consensus 182 ~~~~~~f~~~~~~~~v~v~~~p~~~~~~~---------~~v~---i~yl~~----~~~~l~~~~~~~~--~~--~~~--- 238 (1017)
..|.+|++.... ..+.++..+..+.... ++.. ..+.+. ..+.+........ .. ...
T Consensus 192 ~ef~~~l~~~~~-~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (997)
T 4a4z_A 192 YEFANWIGRTKQ-KNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGST 270 (997)
T ss_dssp HHHHHHHHHHHT-CCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHCCCC-CCEEEEECCCCCCCCEEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 899999832358-8659983688875646888548750000042035667779999998632243343210000012222
Q ss_pred -CCCC------C-------------------------CC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf -3469------9-------------------------99--975322465558999999999998408887987899908
Q 001758 239 -RYCS------G-------------------------PS--PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLP 284 (1017)
Q Consensus 239 -~y~~------~-------------------------~~--~~~~~~~~~~~~~~li~~lv~~i~~~~~~~~g~ILVFlp 284 (1017)
.... + .. ..+....... ..+..++..+... . .+++|||++
T Consensus 271 ~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~l~~~-~--~~~~IVF~~ 344 (997)
T 4a4z_A 271 ARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSK---KTWPEIVNYLRKR-E--LLPMVVFVF 344 (997)
T ss_dssp ----------------------------------------------CCCCT---THHHHHHHHHHHT-T--CCSEEEECS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHC-C--CCCEEEEEC
T ss_conf 234444321235433344444555444443344434566542212246666---6899999999847-9--997899989
Q ss_pred CHHHHHHHHHHHCCCCC-------------------------------------CCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 89999999998248799-------------------------------------95899963999999999998720599
Q 001758 285 TYYALEQQWHLMKPLSS-------------------------------------FFKVHILHSSVDTEQALMAMKICKSH 327 (1017)
Q Consensus 285 s~~~ie~l~~~L~~~~~-------------------------------------~~~v~~lHs~l~~~~r~~v~~~f~~~ 327 (1017)
++.+++.++..|..... ..++.++|++|++.+|..+++.|+.|
T Consensus 345 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G 424 (997)
T 4a4z_A 345 SKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKG 424 (997)
T ss_dssp CHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 88899999999845799977889999999999997446544211247878888636846624999999999999999779
Q ss_pred C-EEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCEEECCHHHHHHHCCCCCCCC---CCCEEEEECH
Q ss_conf 6-89998474312545799119993886311562478886544224318832998549989789---9819997331
Q 001758 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTK 400 (1017)
Q Consensus 328 r-kIIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~ISkasa~QRaGRAGR~~---~G~cyrLys~ 400 (1017)
. +|||||+++++|||+|+ +.||..+..+ ||.. ...|+|.+++.||+|||||.+ .|.||.++..
T Consensus 425 ~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~ 491 (997)
T 4a4z_A 425 FIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYN 491 (997)
T ss_dssp CCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCS
T ss_pred CCCEEEECHHHHCCCCCCC-CEEEEECCCC---CCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 9839997208667798888-6699940532---4676------6777999998277413356887763599996488
No 10
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=1.00 E-value=1 Score=301.46 Aligned_cols=293 Identities=16% Similarity=0.164 Sum_probs=209.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 99999999829919999089981869999999854---998599956389999999999994318846972267420454
Q 001758 32 REKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSK 108 (1017)
Q Consensus 32 Q~eil~~i~~~~~vII~apTGSGKTtqip~~lle~---~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~ 108 (1017)
+....+++.+++++++++|||||||+++...+++. ...++++++|+|.++.++++++. |..+++......
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHC-------CCEEEEEECCCC
T ss_conf 7888999850994999879989888999999999998679959998863999999999965-------956757832410
Q ss_pred -CCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf -5689973999878999999980598856750899805321233310799999999851899619997212694789999
Q 001758 109 -HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDY 187 (1017)
Q Consensus 109 -~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~s~IIIDEaHER~~~~D~ll~~Lk~ll~~r~dlkiIlmSATld~~~~~~~ 187 (1017)
...+...+.++|.+.+.+.+.... .+.++++|||||||+++...++.+++++.... .++.++|+||||++.+.. .
T Consensus 84 ~~~t~~~~i~~~~~~~l~~~l~~~~-~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~~-~- 159 (459)
T 2z83_A 84 REHQGNEIVDVMCHATLTHRLMSPN-RVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTTD-P- 159 (459)
T ss_dssp ----CCCSEEEEEHHHHHHHHHSCC--CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCC-S-
T ss_pred CCCCCCCEEEEECHHHHHHHHHCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHH-H-
T ss_conf 4789984799986089999762665-55677589997874677322678999998741-678628999737873202-3-
Q ss_pred HHHCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 86429984148997168884303343741277788873157788521111234699999753224655589999999999
Q 001758 188 FRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLH 267 (1017)
Q Consensus 188 f~~~~~~~~v~v~~~p~~~~~~~~~v~i~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~ 267 (1017)
+ .....++...... .+...+. ... ..+
T Consensus 160 ~--~~~~~pi~~~~~~---------------------------------------~~~~~~~------~~~----~~l-- 186 (459)
T 2z83_A 160 F--PDSNAPIHDLQDE---------------------------------------IPDRAWS------SGY----EWI-- 186 (459)
T ss_dssp S--CCCSSCEEEEECC---------------------------------------CCSSCCS------SCC----HHH--
T ss_pred H--CCCCCCEEEECCC---------------------------------------CCCCHHH------HHH----HHH--
T ss_conf 2--2589973784346---------------------------------------8962058------899----999--
Q ss_pred HHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCE
Q ss_conf 9840888798789990889999999998248799958999639999999999987205996-899984743125457991
Q 001758 268 IHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKV 346 (1017)
Q Consensus 268 i~~~~~~~~g~ILVFlps~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~~r~~v~~~f~~~r-kIIVATniaEtGItIP~V 346 (1017)
.. . .+++|||++++.+++.+++.|... ++.+..+|+. +|..+++.|++|. +|||||+++|+|||||+
T Consensus 187 -~~-~---~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~- 254 (459)
T 2z83_A 187 -TE-Y---AGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA- 254 (459)
T ss_dssp -HH-C---CSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-
T ss_pred -HH-C---CCCEEEEECCHHHHHHHHHHHHHC--CCCEEECCHH----HHHHHHHHCCCCCCEEEEECCHHHHCEECCC-
T ss_conf -84-5---899999969869999999999865--9908855999----9999985335798559998981871860489-
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCE---EECCHHHHHHHCCCCCCCC--CCCEEEEECHH
Q ss_conf 1999388631156247888654422---4318832998549989789--98199973310
Q 001758 347 AYVIDSCRSLQVFWDVNRKIDSAEL---VWVSQSQAEQRRGRTGRTC--DGQVYRLVTKS 401 (1017)
Q Consensus 347 ~~VIDsG~~k~~~yd~~~~~~~l~~---~~ISkasa~QRaGRAGR~~--~G~cyrLys~~ 401 (1017)
++||++|+.+.+.++. .+.+.+.. .|.|.+++.||+|||||.+ +|.||.+++..
T Consensus 255 ~~VI~~G~~~~~~~~~-~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 255 SRVIDCRKSVKPTILE-EGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SEEEECCEECCEEEEC-SSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCC
T ss_conf 8899788522221024-5533210156777798899873615688989997299997666
Done!