Query 001759
Match_columns 1017
No_of_seqs 822 out of 4255
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0520 Uncharacterized conser 100.0 9E-135 2E-139 1206.5 44.8 891 6-989 16-947 (975)
2 PF03859 CG-1: CG-1 domain; I 100.0 4E-62 8.8E-67 454.9 9.7 117 19-136 2-118 (118)
3 KOG4412 26S proteasome regulat 99.9 9.6E-22 2.1E-26 196.1 9.8 127 638-776 30-163 (226)
4 KOG4412 26S proteasome regulat 99.8 4E-21 8.6E-26 191.7 11.1 154 610-776 37-196 (226)
5 PHA02791 ankyrin-like protein; 99.8 2.8E-18 6.1E-23 190.2 16.6 151 612-776 62-218 (284)
6 KOG0509 Ankyrin repeat and DHH 99.8 3.1E-18 6.7E-23 198.8 14.4 168 615-800 48-221 (600)
7 PHA02859 ankyrin repeat protei 99.7 1.4E-17 3.1E-22 177.0 15.5 145 610-766 50-202 (209)
8 PHA02946 ankyin-like protein; 99.7 3.8E-17 8.2E-22 192.6 17.7 153 612-776 38-199 (446)
9 PHA02878 ankyrin repeat protei 99.7 4.3E-17 9.4E-22 193.8 17.2 140 626-776 148-291 (477)
10 PHA02878 ankyrin repeat protei 99.7 5.8E-17 1.2E-21 192.7 17.9 152 612-776 38-259 (477)
11 PHA02791 ankyrin-like protein; 99.7 5.8E-17 1.2E-21 179.8 16.5 151 610-776 29-184 (284)
12 KOG0509 Ankyrin repeat and DHH 99.7 1.2E-17 2.7E-22 193.8 10.4 141 613-765 80-221 (600)
13 PHA02798 ankyrin-like protein; 99.7 8.3E-17 1.8E-21 192.0 17.4 161 610-776 70-282 (489)
14 PHA02716 CPXV016; CPX019; EVM0 99.7 7.2E-17 1.6E-21 197.5 16.6 155 610-776 176-390 (764)
15 PHA02743 Viral ankyrin protein 99.7 7.5E-17 1.6E-21 165.3 13.9 124 614-743 23-154 (166)
16 PHA02859 ankyrin repeat protei 99.7 2.1E-16 4.5E-21 168.1 17.4 149 612-776 22-183 (209)
17 PHA02874 ankyrin repeat protei 99.7 1.9E-16 4E-21 186.1 18.0 150 612-776 125-279 (434)
18 PHA03100 ankyrin repeat protei 99.7 1.8E-16 4E-21 187.9 16.6 155 610-776 140-307 (480)
19 PLN03192 Voltage-dependent pot 99.7 5.5E-17 1.2E-21 204.7 12.1 150 612-776 526-679 (823)
20 PHA02875 ankyrin repeat protei 99.7 2.5E-16 5.4E-21 183.5 16.7 153 611-776 68-226 (413)
21 PHA02874 ankyrin repeat protei 99.7 4E-16 8.6E-21 183.3 17.7 152 612-776 36-214 (434)
22 PHA02875 ankyrin repeat protei 99.7 5E-16 1.1E-20 181.0 18.2 154 610-776 34-192 (413)
23 PHA03095 ankyrin-like protein; 99.7 4.2E-16 9.2E-21 184.2 16.6 156 609-776 45-213 (471)
24 PHA03095 ankyrin-like protein; 99.7 6.8E-16 1.5E-20 182.5 17.5 155 610-776 82-248 (471)
25 KOG0508 Ankyrin repeat protein 99.7 1.2E-16 2.5E-21 178.7 9.9 139 624-775 96-234 (615)
26 PHA02716 CPXV016; CPX019; EVM0 99.7 4.9E-16 1.1E-20 190.3 15.7 142 623-776 153-343 (764)
27 PHA02798 ankyrin-like protein; 99.7 6.6E-16 1.4E-20 184.3 16.3 144 622-776 48-210 (489)
28 PHA02989 ankyrin repeat protei 99.7 8.9E-16 1.9E-20 183.4 17.5 159 612-776 70-280 (494)
29 PHA03100 ankyrin repeat protei 99.7 1E-15 2.3E-20 181.5 17.6 107 628-740 89-199 (480)
30 PHA02989 ankyrin repeat protei 99.7 6.7E-16 1.4E-20 184.5 15.5 159 611-775 108-312 (494)
31 PHA02876 ankyrin repeat protei 99.6 2.2E-15 4.8E-20 186.8 18.8 154 611-776 273-433 (682)
32 KOG0512 Fetal globin-inducing 99.6 1.3E-15 2.8E-20 151.5 13.2 141 614-767 67-209 (228)
33 PHA02741 hypothetical protein; 99.6 1.1E-15 2.3E-20 157.2 12.9 126 639-775 15-155 (169)
34 KOG0195 Integrin-linked kinase 99.6 2.7E-16 5.9E-21 166.3 8.6 129 635-775 24-152 (448)
35 PHA02876 ankyrin repeat protei 99.6 2.4E-15 5.2E-20 186.5 18.5 155 610-776 340-498 (682)
36 PHA02743 Viral ankyrin protein 99.6 1.2E-15 2.7E-20 156.4 12.8 132 634-776 9-152 (166)
37 PHA02946 ankyin-like protein; 99.6 1.7E-15 3.7E-20 178.6 15.7 153 609-776 70-233 (446)
38 PHA02795 ankyrin-like protein; 99.6 3.8E-15 8.2E-20 172.2 16.3 154 609-776 114-286 (437)
39 PHA02741 hypothetical protein; 99.6 2.6E-15 5.7E-20 154.2 12.8 126 610-742 20-157 (169)
40 PHA02884 ankyrin repeat protei 99.6 5.3E-15 1.2E-19 164.7 14.2 124 608-738 30-158 (300)
41 PHA02730 ankyrin-like protein; 99.6 8.2E-15 1.8E-19 176.7 16.7 157 608-776 340-522 (672)
42 KOG0502 Integral membrane anky 99.6 1.8E-15 3.9E-20 155.3 9.3 129 634-774 149-280 (296)
43 KOG0514 Ankyrin repeat protein 99.6 9.1E-16 2E-20 167.3 7.2 115 638-763 261-414 (452)
44 PHA02736 Viral ankyrin protein 99.6 2.5E-15 5.5E-20 151.6 8.9 127 610-743 16-152 (154)
45 KOG4177 Ankyrin [Cell wall/mem 99.6 5.3E-15 1.1E-19 184.4 12.8 149 609-765 505-653 (1143)
46 PHA02917 ankyrin-like protein; 99.6 2.2E-14 4.7E-19 176.2 16.9 122 648-776 106-254 (661)
47 PHA02884 ankyrin repeat protei 99.6 1.7E-14 3.7E-19 160.7 13.6 115 640-765 27-146 (300)
48 PF12796 Ank_2: Ankyrin repeat 99.6 1.8E-14 3.8E-19 131.5 11.1 84 649-742 1-84 (89)
49 PHA02917 ankyrin-like protein; 99.6 2.5E-14 5.4E-19 175.6 15.8 157 610-776 31-220 (661)
50 KOG0508 Ankyrin repeat protein 99.6 1.2E-14 2.6E-19 162.7 11.0 138 627-776 57-207 (615)
51 PHA02736 Viral ankyrin protein 99.5 1.5E-14 3.3E-19 145.9 10.3 126 638-776 10-150 (154)
52 KOG0510 Ankyrin repeat protein 99.5 1E-14 2.2E-19 172.3 10.2 144 608-761 270-415 (929)
53 KOG0510 Ankyrin repeat protein 99.5 2.6E-14 5.7E-19 168.9 12.8 131 638-776 266-401 (929)
54 PHA02795 ankyrin-like protein; 99.5 5.8E-14 1.3E-18 162.4 15.4 148 621-776 86-245 (437)
55 cd01175 IPT_COE IPT domain of 99.5 2.3E-14 5.1E-19 126.1 9.0 80 440-526 2-83 (85)
56 KOG0505 Myosin phosphatase, re 99.5 4.6E-14 9.9E-19 161.4 12.0 155 615-776 44-255 (527)
57 KOG0505 Myosin phosphatase, re 99.5 2.7E-14 5.8E-19 163.2 8.9 145 611-768 73-276 (527)
58 PHA02730 ankyrin-like protein; 99.5 2E-13 4.4E-18 164.8 15.5 143 626-776 21-179 (672)
59 KOG4177 Ankyrin [Cell wall/mem 99.5 2E-13 4.4E-18 170.5 13.2 151 613-776 476-630 (1143)
60 PLN03192 Voltage-dependent pot 99.5 7.7E-13 1.7E-17 167.4 17.3 126 641-776 521-646 (823)
61 PF12796 Ank_2: Ankyrin repeat 99.4 6.8E-13 1.5E-17 121.0 10.4 89 615-708 1-89 (89)
62 KOG0195 Integrin-linked kinase 99.4 5.3E-13 1.2E-17 141.6 8.9 127 609-742 32-158 (448)
63 KOG0502 Integral membrane anky 99.4 2E-13 4.3E-18 140.5 5.0 108 626-740 174-281 (296)
64 KOG0512 Fetal globin-inducing 99.4 8.6E-13 1.9E-17 131.6 9.2 106 647-764 65-171 (228)
65 KOG0514 Ankyrin repeat protein 99.4 9.9E-13 2.1E-17 143.9 9.5 106 626-738 321-428 (452)
66 PHA02792 ankyrin-like protein; 99.4 5.2E-12 1.1E-16 151.3 16.4 153 610-776 305-477 (631)
67 cd00204 ANK ankyrin repeats; 99.4 6.8E-12 1.5E-16 118.6 13.5 114 640-765 2-115 (126)
68 KOG0507 CASK-interacting adapt 99.4 1.1E-12 2.4E-17 154.4 9.0 96 612-708 50-145 (854)
69 TIGR00870 trp transient-recept 99.4 5.1E-12 1.1E-16 158.5 15.7 147 609-766 50-218 (743)
70 KOG4214 Myotrophin and similar 99.4 2.6E-12 5.5E-17 116.2 9.3 112 648-772 5-116 (117)
71 TIGR00870 trp transient-recept 99.3 2.9E-12 6.3E-17 160.7 11.8 160 608-774 79-279 (743)
72 COG0666 Arp FOG: Ankyrin repea 99.3 1.1E-11 2.5E-16 128.8 12.5 106 629-740 90-203 (235)
73 KOG0507 CASK-interacting adapt 99.3 3.4E-12 7.3E-17 150.4 8.1 126 637-774 41-170 (854)
74 PHA02792 ankyrin-like protein; 99.3 8.6E-12 1.9E-16 149.5 11.3 117 617-740 345-476 (631)
75 cd00204 ANK ankyrin repeats; 99.3 4E-11 8.6E-16 113.3 13.4 119 612-737 8-126 (126)
76 KOG1710 MYND Zn-finger and ank 99.3 1.2E-11 2.6E-16 131.6 10.3 97 636-738 36-133 (396)
77 KOG0515 p53-interacting protei 99.3 1.1E-11 2.5E-16 140.2 9.2 109 627-740 565-675 (752)
78 COG0666 Arp FOG: Ankyrin repea 99.2 1.1E-10 2.3E-15 121.5 14.3 119 638-768 66-192 (235)
79 PF13857 Ank_5: Ankyrin repeat 99.2 1E-11 2.3E-16 104.4 4.3 50 636-685 7-56 (56)
80 PTZ00322 6-phosphofructo-2-kin 99.2 5E-11 1.1E-15 147.3 11.2 86 648-739 85-170 (664)
81 PF13857 Ank_5: Ankyrin repeat 99.2 1.5E-11 3.4E-16 103.3 4.5 55 664-724 1-56 (56)
82 KOG4214 Myotrophin and similar 99.2 4E-11 8.7E-16 108.5 7.2 86 632-724 22-107 (117)
83 PF13637 Ank_4: Ankyrin repeat 99.2 3.3E-11 7.1E-16 100.3 6.1 54 645-698 1-54 (54)
84 KOG3676 Ca2+-permeable cation 99.2 1.3E-10 2.8E-15 139.1 13.2 156 609-774 141-330 (782)
85 KOG0520 Uncharacterized conser 99.2 5.3E-10 1.1E-14 137.0 18.4 268 454-771 402-695 (975)
86 PF13637 Ank_4: Ankyrin repeat 99.1 1.7E-10 3.7E-15 96.0 6.4 54 678-737 1-54 (54)
87 PF01833 TIG: IPT/TIG domain; 99.1 5.3E-10 1.1E-14 100.8 9.6 83 440-526 2-85 (85)
88 PTZ00322 6-phosphofructo-2-kin 99.1 4.2E-10 9.2E-15 139.1 11.1 104 615-725 86-196 (664)
89 KOG1710 MYND Zn-finger and ank 99.0 5.8E-10 1.3E-14 119.0 9.6 108 646-764 13-120 (396)
90 KOG0515 p53-interacting protei 99.0 4E-10 8.6E-15 127.9 8.4 106 648-764 553-658 (752)
91 KOG3676 Ca2+-permeable cation 99.0 8E-10 1.7E-14 132.4 11.1 123 610-739 183-330 (782)
92 cd01179 IPT_plexin_repeat2 Sec 98.9 8.3E-09 1.8E-13 94.3 10.5 83 440-528 2-85 (85)
93 cd00102 IPT Immunoglobulin-lik 98.9 1.1E-08 2.5E-13 93.3 10.3 83 440-527 2-88 (89)
94 KOG4369 RTK signaling protein 98.9 2.6E-09 5.6E-14 129.0 6.8 160 610-776 756-916 (2131)
95 KOG0818 GTPase-activating prot 98.7 4.9E-08 1.1E-12 110.6 9.7 95 638-738 120-221 (669)
96 cd00603 IPT_PCSR IPT domain of 98.6 2.9E-07 6.3E-12 84.7 10.3 84 440-527 2-89 (90)
97 KOG4369 RTK signaling protein 98.6 3.7E-08 7.9E-13 119.4 4.5 121 645-776 757-881 (2131)
98 KOG0783 Uncharacterized conser 98.5 2.9E-08 6.3E-13 117.8 2.8 83 638-726 45-128 (1267)
99 smart00429 IPT ig-like, plexin 98.5 3.2E-07 7E-12 84.3 8.7 84 439-527 2-90 (90)
100 cd01180 IPT_plexin_repeat1 Fir 98.5 4.7E-07 1E-11 84.5 9.6 87 440-528 2-94 (94)
101 KOG0705 GTPase-activating prot 98.5 4.7E-07 1E-11 104.6 10.1 95 609-705 623-721 (749)
102 KOG0506 Glutaminase (contains 98.4 2.3E-07 5E-12 105.0 5.5 94 641-740 502-596 (622)
103 cd01181 IPT_plexin_repeat3 Thi 98.3 1.7E-06 3.7E-11 81.5 8.6 72 440-514 2-81 (99)
104 KOG0782 Predicted diacylglycer 98.3 1.3E-06 2.8E-11 100.3 8.8 123 610-740 866-990 (1004)
105 PF13606 Ank_3: Ankyrin repeat 98.3 6E-07 1.3E-11 65.9 3.8 29 677-705 1-29 (30)
106 KOG0783 Uncharacterized conser 98.3 4.1E-07 8.9E-12 108.3 3.4 82 671-763 45-126 (1267)
107 PF00023 Ank: Ankyrin repeat H 98.2 1.4E-06 2.9E-11 65.2 4.2 32 677-708 1-32 (33)
108 cd02849 CGTase_C_term Cgtase ( 98.2 7.9E-06 1.7E-10 74.1 9.5 79 439-526 3-81 (81)
109 KOG0160 Myosin class V heavy c 98.2 4.6E-05 9.9E-10 94.5 19.0 87 799-894 673-759 (862)
110 KOG0160 Myosin class V heavy c 98.2 1.6E-05 3.5E-10 98.4 15.2 125 788-917 592-736 (862)
111 KOG0818 GTPase-activating prot 98.2 5.1E-06 1.1E-10 94.7 8.7 89 610-699 132-221 (669)
112 PF13606 Ank_3: Ankyrin repeat 98.1 2.5E-06 5.4E-11 62.6 3.7 30 644-673 1-30 (30)
113 PF00023 Ank: Ankyrin repeat H 98.1 3.1E-06 6.6E-11 63.2 4.2 33 644-676 1-33 (33)
114 KOG0705 GTPase-activating prot 98.1 6.6E-06 1.4E-10 95.4 8.0 90 649-744 628-721 (749)
115 KOG0522 Ankyrin repeat protein 98.1 7.8E-06 1.7E-10 94.6 7.6 68 633-700 43-110 (560)
116 KOG0522 Ankyrin repeat protein 98.0 9.1E-06 2E-10 94.1 6.9 88 647-740 22-111 (560)
117 KOG0164 Myosin class I heavy c 98.0 6.6E-05 1.4E-09 89.1 13.8 117 794-922 617-757 (1001)
118 COG5022 Myosin heavy chain [Cy 97.9 0.00027 5.9E-09 90.4 17.9 102 791-895 658-787 (1463)
119 cd00604 IPT_CGTD IPT domain (d 97.9 8.4E-05 1.8E-09 67.5 9.6 79 440-527 2-80 (81)
120 KOG0521 Putative GTPase activa 97.8 1.3E-05 2.8E-10 99.8 4.9 99 634-738 643-743 (785)
121 KOG2384 Major histocompatibili 97.8 5.4E-05 1.2E-09 77.7 8.0 65 669-739 3-68 (223)
122 KOG0506 Glutaminase (contains 97.8 2.1E-05 4.6E-10 89.5 4.3 85 618-703 513-598 (622)
123 KOG3609 Receptor-activated Ca2 97.7 9.9E-05 2.2E-09 90.0 9.5 126 613-745 27-159 (822)
124 PTZ00014 myosin-A; Provisional 97.7 0.00011 2.5E-09 92.4 10.1 102 789-894 689-818 (821)
125 KOG0782 Predicted diacylglycer 97.6 6.2E-05 1.3E-09 86.9 5.9 103 650-764 871-975 (1004)
126 KOG0511 Ankyrin repeat protein 97.5 0.00014 3.1E-09 81.1 6.8 84 646-738 37-120 (516)
127 PF00612 IQ: IQ calmodulin-bin 97.5 0.00011 2.4E-09 49.4 3.5 20 877-896 2-21 (21)
128 KOG2384 Major histocompatibili 97.5 0.00022 4.7E-09 73.4 6.4 70 635-704 2-72 (223)
129 PF00612 IQ: IQ calmodulin-bin 97.2 0.00036 7.9E-09 46.9 3.5 21 853-873 1-21 (21)
130 KOG0511 Ankyrin repeat protein 97.2 0.0012 2.6E-08 73.9 8.6 57 680-742 38-94 (516)
131 KOG0521 Putative GTPase activa 97.0 0.00049 1.1E-08 86.2 4.3 85 668-764 644-730 (785)
132 COG5022 Myosin heavy chain [Cy 96.8 0.075 1.6E-06 69.0 20.5 48 851-898 840-887 (1463)
133 KOG0161 Myosin class II heavy 96.4 0.12 2.6E-06 70.0 20.1 108 785-895 684-818 (1930)
134 smart00015 IQ Short calmodulin 96.1 0.0057 1.2E-07 43.3 3.2 21 876-896 3-23 (26)
135 cd00602 IPT_TF IPT domain of e 96.1 0.024 5.2E-07 53.8 8.0 82 440-527 2-100 (101)
136 smart00015 IQ Short calmodulin 96.0 0.0076 1.7E-07 42.7 3.2 22 852-873 2-23 (26)
137 KOG3610 Plexins (functional se 95.9 0.019 4.2E-07 73.1 8.5 95 433-532 137-234 (1025)
138 KOG0162 Myosin class I heavy c 95.8 0.04 8.7E-07 66.4 10.1 95 794-898 617-738 (1106)
139 smart00248 ANK ankyrin repeats 95.7 0.016 3.6E-07 39.2 3.9 27 678-704 2-28 (30)
140 KOG2505 Ankyrin repeat protein 95.5 0.025 5.5E-07 65.8 6.8 61 659-725 405-471 (591)
141 cd01176 IPT_RBP-Jkappa IPT dom 95.2 0.079 1.7E-06 48.5 7.4 66 455-527 20-96 (97)
142 KOG2505 Ankyrin repeat protein 95.0 0.033 7.1E-07 64.9 5.6 73 691-769 404-476 (591)
143 cd01178 IPT_NFAT IPT domain of 95.0 0.077 1.7E-06 50.1 7.0 81 439-527 2-100 (101)
144 smart00248 ANK ankyrin repeats 94.9 0.037 8.1E-07 37.4 3.7 29 644-672 1-29 (30)
145 KOG3609 Receptor-activated Ca2 94.5 0.083 1.8E-06 65.4 7.7 117 647-776 27-155 (822)
146 cd01177 IPT_NFkappaB IPT domai 93.8 0.25 5.4E-06 46.7 7.5 82 440-527 2-101 (102)
147 PF08549 SWI-SNF_Ssr4: Fungal 92.5 0.28 6E-06 59.8 7.4 104 27-137 30-155 (669)
148 PTZ00014 myosin-A; Provisional 91.7 0.38 8.3E-06 61.4 7.7 40 877-916 778-817 (821)
149 KOG0161 Myosin class II heavy 91.3 3.4 7.3E-05 56.9 16.0 66 828-893 771-842 (1930)
150 KOG0163 Myosin class VI heavy 90.3 8.4 0.00018 47.6 16.3 21 878-898 815-835 (1259)
151 KOG0164 Myosin class I heavy c 89.9 1.2 2.6E-05 54.3 9.1 83 799-898 696-789 (1001)
152 KOG0163 Myosin class VI heavy 88.9 6.3 0.00014 48.6 13.9 32 851-882 811-842 (1259)
153 KOG2128 Ras GTPase-activating 87.9 4.4 9.6E-05 53.3 12.6 45 854-898 566-614 (1401)
154 PF15290 Syntaphilin: Golgi-lo 87.1 1.4 3E-05 48.4 6.5 69 948-1016 70-153 (305)
155 KOG3836 HLH transcription fact 86.5 0.83 1.8E-05 55.2 4.9 144 438-681 322-465 (605)
156 KOG2128 Ras GTPase-activating 86.0 8.6 0.00019 50.8 13.7 51 848-898 587-644 (1401)
157 PF12325 TMF_TATA_bd: TATA ele 82.3 19 0.0004 35.5 11.3 73 942-1014 40-116 (120)
158 KOG1853 LIS1-interacting prote 81.1 10 0.00022 41.3 9.7 68 942-1015 48-115 (333)
159 PRK15422 septal ring assembly 78.8 11 0.00025 34.0 7.7 67 948-1014 6-73 (79)
160 PF09726 Macoilin: Transmembra 78.4 27 0.00059 44.3 13.9 31 985-1015 627-657 (697)
161 COG3074 Uncharacterized protei 78.3 12 0.00027 32.8 7.5 67 948-1014 6-73 (79)
162 KOG4427 E3 ubiquitin protein l 78.1 3 6.4E-05 51.4 5.2 27 848-874 25-51 (1096)
163 PF06005 DUF904: Protein of un 76.7 13 0.00029 33.2 7.7 61 948-1014 6-66 (72)
164 KOG1029 Endocytic adaptor prot 76.5 56 0.0012 41.0 15.0 70 943-1012 434-504 (1118)
165 KOG0942 E3 ubiquitin protein l 74.2 5.6 0.00012 50.3 6.2 23 851-873 27-49 (1001)
166 KOG1029 Endocytic adaptor prot 73.9 82 0.0018 39.6 15.5 30 985-1014 470-499 (1118)
167 PF06128 Shigella_OspC: Shigel 72.5 9.7 0.00021 41.1 6.7 121 609-742 151-279 (284)
168 PF02183 HALZ: Homeobox associ 71.3 4.5 9.8E-05 32.8 3.1 41 971-1011 3-43 (45)
169 PF08317 Spc7: Spc7 kinetochor 70.1 65 0.0014 37.1 13.4 45 969-1013 212-256 (325)
170 KOG3610 Plexins (functional se 69.0 5.3 0.00011 51.8 4.6 75 436-511 47-125 (1025)
171 smart00787 Spc7 Spc7 kinetocho 68.5 57 0.0012 37.4 12.3 10 731-740 11-20 (312)
172 KOG0933 Structural maintenance 66.8 44 0.00094 43.2 11.5 67 948-1014 789-856 (1174)
173 PF07139 DUF1387: Protein of u 65.0 37 0.00081 38.4 9.6 62 955-1016 187-258 (302)
174 KOG0995 Centromere-associated 64.4 55 0.0012 39.9 11.4 110 868-1014 264-373 (581)
175 COG4026 Uncharacterized protei 64.2 24 0.00052 37.9 7.5 46 967-1012 129-174 (290)
176 KOG0250 DNA repair protein RAD 64.1 79 0.0017 41.4 13.3 24 868-891 279-302 (1074)
177 PF10498 IFT57: Intra-flagella 63.4 2.4E+02 0.0052 33.1 16.2 68 939-1012 273-346 (359)
178 PF10168 Nup88: Nuclear pore c 63.1 96 0.0021 39.6 14.0 24 848-871 552-575 (717)
179 PF08763 Ca_chan_IQ: Voltage g 62.4 8.7 0.00019 29.4 2.8 18 854-871 10-27 (35)
180 KOG4427 E3 ubiquitin protein l 62.1 19 0.00042 44.7 7.1 40 858-898 12-52 (1096)
181 KOG0994 Extracellular matrix g 60.6 4.8E+02 0.01 34.9 18.7 38 945-982 1569-1607(1758)
182 COG4026 Uncharacterized protei 60.1 86 0.0019 33.8 10.7 18 854-871 73-90 (290)
183 PF11932 DUF3450: Protein of u 59.8 39 0.00085 37.2 8.8 35 981-1015 85-119 (251)
184 KOG4005 Transcription factor X 59.6 43 0.00092 36.3 8.4 45 967-1011 98-142 (292)
185 PF15035 Rootletin: Ciliary ro 59.3 1E+02 0.0022 32.5 11.3 22 902-923 18-39 (182)
186 PF12128 DUF3584: Protein of u 58.0 3.6E+02 0.0077 36.9 18.8 42 969-1010 493-534 (1201)
187 PRK09039 hypothetical protein; 57.8 3.1E+02 0.0068 31.9 16.0 57 950-1006 127-184 (343)
188 KOG3684 Ca2+-activated K+ chan 56.2 80 0.0017 37.6 10.6 46 850-906 361-406 (489)
189 KOG0250 DNA repair protein RAD 56.2 2.5E+02 0.0055 37.1 15.7 49 967-1015 416-464 (1074)
190 PF08317 Spc7: Spc7 kinetochor 56.0 1.8E+02 0.0039 33.5 13.6 26 894-919 164-189 (325)
191 PF06128 Shigella_OspC: Shigel 55.9 17 0.00037 39.4 4.7 48 657-704 229-280 (284)
192 PRK11637 AmiB activator; Provi 55.9 42 0.0009 40.1 8.7 48 967-1014 83-130 (428)
193 PRK09039 hypothetical protein; 55.5 1.3E+02 0.0029 34.9 12.5 64 952-1015 122-186 (343)
194 KOG0971 Microtubule-associated 55.3 3.9E+02 0.0084 34.7 16.5 72 940-1013 367-443 (1243)
195 PRK10884 SH3 domain-containing 55.0 46 0.001 35.8 8.0 35 976-1010 135-169 (206)
196 PRK10884 SH3 domain-containing 53.9 49 0.0011 35.6 8.0 34 970-1003 136-169 (206)
197 TIGR02680 conserved hypothetic 53.8 3.4E+02 0.0074 37.5 17.7 19 858-876 725-743 (1353)
198 PF09726 Macoilin: Transmembra 53.4 2.3E+02 0.0051 36.1 15.0 27 939-965 538-564 (697)
199 KOG2264 Exostosin EXT1L [Signa 52.9 55 0.0012 39.6 8.6 53 964-1016 98-150 (907)
200 PF05529 Bap31: B-cell recepto 52.5 2.1E+02 0.0045 30.2 12.4 33 976-1008 157-189 (192)
201 PF11932 DUF3450: Protein of u 52.4 1.3E+02 0.0027 33.3 11.2 10 905-914 40-49 (251)
202 PF04899 MbeD_MobD: MbeD/MobD 52.1 63 0.0014 28.8 7.0 63 951-1013 4-68 (70)
203 PF14197 Cep57_CLD_2: Centroso 52.0 48 0.001 29.4 6.2 59 949-1013 8-66 (69)
204 PRK11637 AmiB activator; Provi 52.0 54 0.0012 39.1 8.8 41 971-1011 80-120 (428)
205 PRK15422 septal ring assembly 51.7 59 0.0013 29.6 6.7 59 955-1013 6-65 (79)
206 KOG1962 B-cell receptor-associ 51.4 1.2E+02 0.0025 33.0 10.2 50 939-988 158-208 (216)
207 PF09099 Qn_am_d_aIII: Quinohe 51.2 73 0.0016 29.2 7.4 64 439-511 2-70 (81)
208 TIGR02168 SMC_prok_B chromosom 50.4 2.8E+02 0.0061 37.0 16.1 9 995-1003 923-931 (1179)
209 PF14545 DBB: Dof, BCAP, and B 49.0 66 0.0014 32.6 7.5 77 444-527 3-87 (142)
210 PF10498 IFT57: Intra-flagella 48.9 83 0.0018 36.8 9.4 46 967-1012 274-319 (359)
211 KOG0377 Protein serine/threoni 47.8 26 0.00055 41.2 4.9 22 851-872 15-36 (631)
212 PF00170 bZIP_1: bZIP transcri 47.1 39 0.00084 29.1 4.9 46 969-1014 14-60 (64)
213 PF06785 UPF0242: Uncharacteri 46.9 1.2E+02 0.0026 34.8 9.6 28 987-1014 194-221 (401)
214 PF10168 Nup88: Nuclear pore c 46.5 3.1E+02 0.0067 35.2 14.6 6 439-444 288-293 (717)
215 KOG3743 Recombination signal b 45.9 26 0.00057 42.0 4.7 71 452-529 505-586 (622)
216 PF12128 DUF3584: Protein of u 45.9 3.3E+02 0.0072 37.2 15.6 57 954-1010 360-418 (1201)
217 PF05587 Anth_Ig: Anthrax rece 45.7 6.9 0.00015 37.5 0.0 74 440-516 7-88 (105)
218 PF04156 IncA: IncA protein; 45.5 1.5E+02 0.0032 31.1 10.0 32 980-1011 158-189 (191)
219 KOG0942 E3 ubiquitin protein l 44.7 21 0.00045 45.4 3.8 39 865-903 18-56 (1001)
220 PF04012 PspA_IM30: PspA/IM30 44.6 3.8E+02 0.0082 28.8 13.2 12 870-881 37-48 (221)
221 PF14662 CCDC155: Coiled-coil 43.9 2.4E+02 0.0052 30.1 10.8 59 939-1003 81-139 (193)
222 PF07888 CALCOCO1: Calcium bin 43.8 6.7E+02 0.015 31.1 16.1 57 953-1009 262-319 (546)
223 KOG0804 Cytoplasmic Zn-finger 43.6 1.4E+02 0.0031 35.5 9.9 26 989-1014 423-448 (493)
224 PF10186 Atg14: UV radiation r 43.3 98 0.0021 34.4 8.8 19 994-1012 119-137 (302)
225 TIGR02680 conserved hypothetic 43.1 8.9E+02 0.019 33.6 19.1 21 851-871 244-264 (1353)
226 PRK13729 conjugal transfer pil 43.1 40 0.00087 40.5 5.7 47 967-1013 77-123 (475)
227 PRK04863 mukB cell division pr 42.0 1.1E+03 0.023 33.2 19.4 21 866-886 296-316 (1486)
228 PF14197 Cep57_CLD_2: Centroso 41.4 1.1E+02 0.0025 27.1 6.9 24 985-1008 45-68 (69)
229 PF04156 IncA: IncA protein; 41.0 1.5E+02 0.0034 30.9 9.3 53 959-1011 129-182 (191)
230 PF08826 DMPK_coil: DMPK coile 39.8 73 0.0016 27.7 5.3 43 971-1013 16-58 (61)
231 TIGR03437 Soli_cterm Solibacte 39.7 93 0.002 33.8 7.4 64 452-515 3-75 (215)
232 PF11559 ADIP: Afadin- and alp 39.6 2.7E+02 0.0059 28.1 10.5 9 1002-1010 141-149 (151)
233 smart00787 Spc7 Spc7 kinetocho 39.5 6.5E+02 0.014 29.0 15.1 34 968-1001 227-260 (312)
234 PF15619 Lebercilin: Ciliary p 38.7 3.9E+02 0.0085 28.6 11.8 69 937-1005 116-189 (194)
235 KOG0977 Nuclear envelope prote 38.3 2.3E+02 0.0049 35.0 11.0 36 968-1003 171-213 (546)
236 TIGR01062 parC_Gneg DNA topois 38.2 5.7E+02 0.012 33.0 15.0 42 967-1008 425-466 (735)
237 PF07889 DUF1664: Protein of u 37.5 1.1E+02 0.0024 30.4 6.9 66 941-1006 56-122 (126)
238 PF06005 DUF904: Protein of un 37.5 63 0.0014 29.0 4.7 47 967-1013 12-58 (72)
239 KOG0837 Transcriptional activa 37.4 70 0.0015 35.3 6.0 68 939-1013 200-267 (279)
240 KOG0288 WD40 repeat protein Ti 37.3 1E+02 0.0022 36.3 7.5 39 972-1010 33-71 (459)
241 PRK03918 chromosome segregatio 37.3 2.6E+02 0.0056 36.5 12.4 6 861-866 169-174 (880)
242 TIGR02894 DNA_bind_RsfA transc 37.2 1.3E+02 0.0029 31.1 7.5 47 968-1014 99-145 (161)
243 TIGR01834 PHA_synth_III_E poly 37.1 3.4E+02 0.0073 31.4 11.6 31 985-1015 287-317 (320)
244 PF10186 Atg14: UV radiation r 36.5 5.1E+02 0.011 28.6 13.2 21 989-1009 128-148 (302)
245 PF09789 DUF2353: Uncharacteri 36.5 7.3E+02 0.016 28.7 15.7 27 989-1015 135-161 (319)
246 PRK11578 macrolide transporter 35.7 1.3E+02 0.0027 35.1 8.4 36 944-979 97-133 (370)
247 PF15066 CAGE1: Cancer-associa 35.6 7E+02 0.015 30.1 13.9 20 852-871 395-414 (527)
248 KOG0994 Extracellular matrix g 35.4 1.3E+03 0.028 31.3 21.0 30 984-1013 1721-1750(1758)
249 TIGR01063 gyrA DNA gyrase, A s 34.2 6.8E+02 0.015 32.6 15.1 42 968-1009 429-470 (800)
250 COG1196 Smc Chromosome segrega 34.1 1.2E+03 0.025 31.9 18.0 41 971-1011 868-908 (1163)
251 KOG0979 Structural maintenance 33.8 1.3E+03 0.028 30.8 17.1 65 948-1012 292-357 (1072)
252 COG1196 Smc Chromosome segrega 33.7 6.4E+02 0.014 34.3 15.5 61 949-1009 256-317 (1163)
253 PF06156 DUF972: Protein of un 33.7 76 0.0017 30.6 5.0 42 972-1013 14-55 (107)
254 COG3074 Uncharacterized protei 33.4 1.7E+02 0.0037 26.0 6.5 59 955-1013 6-65 (79)
255 PF03106 WRKY: WRKY DNA -bindi 33.0 18 0.00039 31.2 0.6 8 70-77 2-9 (60)
256 PF06428 Sec2p: GDP/GTP exchan 32.8 72 0.0016 30.5 4.6 71 942-1012 11-83 (100)
257 TIGR03017 EpsF chain length de 32.8 9E+02 0.019 28.7 15.5 16 996-1011 320-335 (444)
258 PF03158 DUF249: Multigene fam 32.6 56 0.0012 34.5 4.1 112 609-738 74-191 (192)
259 PRK05560 DNA gyrase subunit A; 32.6 7.9E+02 0.017 32.1 15.4 43 967-1009 431-473 (805)
260 COG0497 RecN ATPase involved i 32.2 7.7E+02 0.017 30.7 14.2 35 858-898 158-192 (557)
261 KOG0377 Protein serine/threoni 31.8 68 0.0015 37.9 5.0 25 877-901 18-43 (631)
262 PF12728 HTH_17: Helix-turn-he 31.7 34 0.00073 27.8 2.0 43 26-68 1-47 (51)
263 PF07888 CALCOCO1: Calcium bin 31.3 6.1E+02 0.013 31.4 13.1 23 990-1012 279-301 (546)
264 PRK05561 DNA topoisomerase IV 31.2 5.5E+02 0.012 33.1 13.5 41 968-1008 439-479 (742)
265 PRK00888 ftsB cell division pr 31.0 40 0.00087 32.3 2.6 36 973-1008 27-62 (105)
266 KOG0972 Huntingtin interacting 30.9 2.6E+02 0.0055 31.6 8.9 45 967-1011 281-325 (384)
267 PF11929 DUF3447: Domain of un 30.8 60 0.0013 28.9 3.6 47 647-700 8-54 (76)
268 PF12325 TMF_TATA_bd: TATA ele 30.2 3E+02 0.0065 27.2 8.5 42 941-982 18-60 (120)
269 PF10482 CtIP_N: Tumour-suppre 30.1 1.9E+02 0.0042 28.1 6.9 45 967-1011 72-120 (120)
270 TIGR03545 conserved hypothetic 30.1 1.3E+02 0.0027 37.4 7.4 10 910-919 178-187 (555)
271 TIGR01061 parC_Gpos DNA topois 29.9 7.1E+02 0.015 32.2 14.1 41 968-1008 429-469 (738)
272 KOG0162 Myosin class I heavy c 29.8 79 0.0017 39.6 5.3 22 878-899 698-719 (1106)
273 TIGR03545 conserved hypothetic 29.7 1.3E+02 0.0029 37.2 7.4 28 899-926 160-187 (555)
274 COG5185 HEC1 Protein involved 29.4 2.9E+02 0.0064 33.1 9.6 27 868-894 300-326 (622)
275 TIGR01010 BexC_CtrB_KpsE polys 29.3 8.7E+02 0.019 28.1 13.9 23 894-916 178-200 (362)
276 PF11929 DUF3447: Domain of un 28.9 75 0.0016 28.3 3.9 47 680-739 8-54 (76)
277 KOG3584 cAMP response element 28.8 99 0.0021 34.6 5.4 7 438-444 214-220 (348)
278 smart00338 BRLZ basic region l 28.6 1.4E+02 0.0031 25.6 5.5 28 985-1012 31-58 (65)
279 PF10226 DUF2216: Uncharacteri 28.6 1.6E+02 0.0034 31.2 6.6 65 938-1002 8-77 (195)
280 PF11180 DUF2968: Protein of u 27.5 2.8E+02 0.0061 29.5 8.3 37 967-1003 148-184 (192)
281 PF10146 zf-C4H2: Zinc finger- 27.5 2.7E+02 0.0059 30.6 8.6 9 942-950 32-40 (230)
282 PF12718 Tropomyosin_1: Tropom 27.0 3.5E+02 0.0075 27.5 8.7 71 941-1011 16-90 (143)
283 PRK11546 zraP zinc resistance 26.8 1.8E+02 0.0039 29.6 6.5 45 968-1012 63-114 (143)
284 smart00774 WRKY DNA binding do 26.8 24 0.00052 30.4 0.3 8 70-77 2-9 (59)
285 PRK06835 DNA replication prote 26.7 2.6E+02 0.0056 32.3 8.7 47 967-1015 37-86 (329)
286 COG4372 Uncharacterized protei 26.5 5.3E+02 0.011 30.4 10.7 7 881-887 78-84 (499)
287 PF00038 Filament: Intermediat 25.9 9.8E+02 0.021 26.9 17.5 14 942-955 169-182 (312)
288 PF03962 Mnd1: Mnd1 family; I 25.5 1.6E+02 0.0035 31.2 6.3 20 994-1013 135-154 (188)
289 PF10146 zf-C4H2: Zinc finger- 25.3 6.5E+02 0.014 27.7 11.0 15 973-987 88-102 (230)
290 TIGR03185 DNA_S_dndD DNA sulfu 25.2 2.5E+02 0.0053 35.6 8.9 8 948-955 239-246 (650)
291 PF04111 APG6: Autophagy prote 25.2 2.8E+02 0.006 31.9 8.6 22 991-1012 110-131 (314)
292 TIGR01843 type_I_hlyD type I s 25.2 1.1E+03 0.024 27.3 14.5 137 869-1016 80-239 (423)
293 PF06248 Zw10: Centromere/kine 25.1 1.3E+03 0.028 28.8 15.2 20 994-1013 150-169 (593)
294 TIGR03007 pepcterm_ChnLen poly 25.0 7.9E+02 0.017 29.7 13.0 40 973-1012 254-293 (498)
295 PF07798 DUF1640: Protein of u 25.0 3.9E+02 0.0084 27.9 9.0 45 968-1015 115-159 (177)
296 KOG4643 Uncharacterized coiled 25.0 7E+02 0.015 33.0 12.3 60 949-1008 491-558 (1195)
297 PRK03918 chromosome segregatio 25.0 5.7E+02 0.012 33.3 12.5 6 973-978 666-671 (880)
298 PF07106 TBPIP: Tat binding pr 24.9 1.7E+02 0.0037 30.2 6.3 42 972-1013 92-135 (169)
299 KOG4196 bZIP transcription fac 24.8 3.8E+02 0.0082 26.8 8.0 25 989-1013 90-114 (135)
300 PF07851 TMPIT: TMPIT-like pro 24.8 3.6E+02 0.0078 31.3 9.2 37 972-1008 45-82 (330)
301 PRK02224 chromosome segregatio 24.6 1.2E+03 0.026 30.5 15.3 141 868-1013 535-693 (880)
302 PF09789 DUF2353: Uncharacteri 24.5 1.4E+02 0.003 34.3 5.9 23 986-1008 78-100 (319)
303 PF09728 Taxilin: Myosin-like 24.4 1.1E+03 0.024 27.0 15.6 77 939-1015 135-223 (309)
304 COG1579 Zn-ribbon protein, pos 24.2 1E+03 0.022 26.4 13.6 118 877-1013 7-129 (239)
305 PF03763 Remorin_C: Remorin, C 24.0 3.5E+02 0.0076 26.3 7.7 65 948-1012 17-84 (111)
306 PF10205 KLRAQ: Predicted coil 23.8 6.5E+02 0.014 24.2 9.2 44 941-984 28-72 (102)
307 KOG0978 E3 ubiquitin ligase in 23.7 1.6E+03 0.035 28.7 15.8 44 967-1010 490-533 (698)
308 PF12808 Mto2_bdg: Micro-tubul 23.7 66 0.0014 27.1 2.3 25 983-1007 25-49 (52)
309 PF15290 Syntaphilin: Golgi-lo 23.6 78 0.0017 35.3 3.5 33 976-1008 71-103 (305)
310 COG4942 Membrane-bound metallo 23.5 2.6E+02 0.0057 33.3 8.0 68 946-1013 38-106 (420)
311 KOG0977 Nuclear envelope prote 23.3 9.2E+02 0.02 30.0 12.6 66 945-1010 263-333 (546)
312 TIGR01005 eps_transp_fam exopo 22.9 1.7E+03 0.037 28.6 17.0 140 876-1015 167-337 (754)
313 COG5185 HEC1 Protein involved 22.8 1.3E+03 0.029 27.9 13.2 38 974-1011 369-406 (622)
314 KOG4005 Transcription factor X 22.6 2.6E+02 0.0056 30.6 7.0 43 967-1009 105-147 (292)
315 PRK04778 septation ring format 22.5 1E+03 0.023 29.5 13.5 63 951-1013 395-460 (569)
316 PF04880 NUDE_C: NUDE protein, 22.4 1.2E+02 0.0026 31.6 4.4 10 951-960 5-14 (166)
317 PF04048 Sec8_exocyst: Sec8 ex 22.2 6.7E+02 0.015 25.2 9.8 58 954-1011 66-124 (142)
318 PF12761 End3: Actin cytoskele 22.2 4.4E+02 0.0094 28.3 8.5 74 940-1013 97-193 (195)
319 KOG0995 Centromere-associated 22.2 8.5E+02 0.018 30.2 11.9 21 992-1012 337-357 (581)
320 PF05667 DUF812: Protein of un 22.1 1.6E+03 0.036 28.2 16.5 30 983-1012 501-530 (594)
321 PF00170 bZIP_1: bZIP transcri 22.1 1.3E+02 0.0029 25.8 4.1 34 978-1011 31-64 (64)
322 KOG0709 CREB/ATF family transc 22.0 1.6E+02 0.0034 35.3 5.8 23 960-982 251-273 (472)
323 PF14362 DUF4407: Domain of un 22.0 6.4E+02 0.014 28.4 10.7 51 938-988 141-204 (301)
324 PF02403 Seryl_tRNA_N: Seryl-t 21.8 3.5E+02 0.0075 25.6 7.3 29 985-1013 72-100 (108)
325 cd00187 TOP4c DNA Topoisomeras 21.8 1.2E+03 0.027 28.1 13.4 41 973-1013 405-445 (445)
326 PF00261 Tropomyosin: Tropomyo 21.6 1.1E+03 0.023 25.8 13.6 12 855-866 72-83 (237)
327 PF15188 CCDC-167: Coiled-coil 21.6 3.1E+02 0.0067 25.5 6.4 60 941-1003 7-66 (85)
328 COG1842 PspA Phage shock prote 21.6 6.2E+02 0.013 27.7 9.9 33 982-1014 108-140 (225)
329 PF02183 HALZ: Homeobox associ 21.5 1.1E+02 0.0023 25.0 3.1 35 969-1003 8-42 (45)
330 PF04977 DivIC: Septum formati 21.5 1.2E+02 0.0027 26.6 3.9 27 980-1006 24-50 (80)
331 PRK10698 phage shock protein P 21.5 1.1E+03 0.023 25.7 12.7 36 980-1015 106-141 (222)
332 KOG0976 Rho/Rac1-interacting s 21.3 1.6E+03 0.035 29.2 14.0 142 858-1013 229-370 (1265)
333 PF07106 TBPIP: Tat binding pr 21.2 1.8E+02 0.0039 30.0 5.6 18 989-1006 118-135 (169)
334 PRK11578 macrolide transporter 21.2 2E+02 0.0044 33.4 6.7 45 968-1012 139-183 (370)
335 PF06810 Phage_GP20: Phage min 21.1 1.6E+02 0.0034 30.4 5.0 17 995-1011 52-68 (155)
336 PF06160 EzrA: Septation ring 21.1 1.2E+03 0.026 29.0 13.6 21 968-988 409-429 (560)
337 PRK13979 DNA topoisomerase IV 21.0 6.2E+02 0.013 33.7 11.4 13 494-506 183-195 (957)
338 PRK10476 multidrug resistance 21.0 2.9E+02 0.0064 31.7 7.9 15 968-982 147-161 (346)
339 KOG4674 Uncharacterized conser 20.6 1.6E+03 0.035 32.0 15.2 98 899-1015 1277-1374(1822)
340 PF10212 TTKRSYEDQ: Predicted 20.3 3.7E+02 0.008 32.9 8.4 15 951-965 418-432 (518)
341 KOG0933 Structural maintenance 20.2 2.2E+03 0.047 28.8 15.5 21 481-501 100-120 (1174)
342 PF05266 DUF724: Protein of un 20.1 4.5E+02 0.0097 28.0 8.3 74 939-1012 103-177 (190)
343 PHA02562 46 endonuclease subun 20.1 1.1E+03 0.025 28.7 13.2 21 869-889 173-193 (562)
344 PF01920 Prefoldin_2: Prefoldi 20.1 3.3E+02 0.0072 25.2 6.7 36 982-1017 71-106 (106)
345 PRK09578 periplasmic multidrug 20.0 2.3E+02 0.005 33.2 6.8 29 947-981 102-130 (385)
No 1
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=100.00 E-value=9.4e-135 Score=1206.54 Aligned_cols=891 Identities=39% Similarity=0.611 Sum_probs=624.9
Q ss_pred CCCCCCcccHHHHHHHHHhhcCChHHHHHHHHcccccccCCCCCCCCCCCceeeeehhhhhhhhccCccceeccCCCchH
Q 001759 6 RYVPNQQLDLEQILQEAQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVK 85 (1017)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~w~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~dg~~w~~~~~~~~~~ 85 (1017)
-|.+.+.||+..+++|++.|||+|+||++||+||++|.|+.+||+||.|||+||||||+|||||||||+|||||||||+|
T Consensus 16 ~~~sl~~l~~~~ll~~~~~rWl~~~EI~~il~n~~~~~lt~~s~trp~sGS~flfnRk~lr~fRKDGh~WkKkkDGKtir 95 (975)
T KOG0520|consen 16 PFKSLQDLDIQTLLPEAKSRWLTPEEILAILINHEKFTLTVSSPTRPQSGSIFLFNRKVLRYFRKDGHNWKKKKDGKTIR 95 (975)
T ss_pred chhhhhhhhhhhhhHHHHhccCChHHHHHHHhcccccccccCCCCCCCCCceeeeccHHHHHHhhcchhhhhcCCCCcCh
Confidence 35556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCEeeEEEEecccccCccccceeeeeccCCCccEEEEeeeccccCCCCCCCCCCCCCccccccccCcccccc
Q 001759 86 EAHEKLKAGSIDVLHCYYAHGEDNENFQRRSYWMLDGQLEHIVLVHYREVKEGYKSGRSAADPGSQIESSQTSSARSLAQ 165 (1017)
Q Consensus 86 e~h~~l~~~~~~~~~~~y~~~~~~~~f~rr~y~~~~~~~~~~v~vhy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1017)
||||||||||+|+||||||||++|||||||||||||+.++||||||||||++-+...+......+.+-| ....|..
T Consensus 96 EaHe~LKvg~~~~l~~~Y~Hg~~~ptF~RRcYwllq~~~~hIVLVHYl~v~~~~~~~~~~~~~~~s~~s---d~~~S~~- 171 (975)
T KOG0520|consen 96 EAHEKLKVGGVEVLHCYYAHGEINPTFQRRCYWLLQQELEHIVLVHYLNVKGNEDAAKGAGEIFSSIIS---DKAWSLN- 171 (975)
T ss_pred HHHHhhccCCccceeeeeecccccchHHHHHHHhhccccCceEEEEEeecccccccccCcccccccccc---cccccHH-
Confidence 999999999999999999999999999999999999999999999999999433321122111111100 0000111
Q ss_pred cCCCCCccCCCCCCCccccccCCcccccccccccCCCCCCCCCccccccccccccchhhhhhccCCccccCCCCcccCCC
Q 001759 166 ANSSAPAAQTSHASIPNKIDWNGQAVSSEFEDVDSGHGSGTPSVAQSIYGSMSQNASLVAASIAGLPELSRHPQWFAGSK 245 (1017)
Q Consensus 166 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1017)
+..+..+|- +. + . ++..+|++++++++.+..+....|. .
T Consensus 172 --------~~~~q~~~~-~~-~-~--~s~~~~v~~i~s~~~~~~~g~~~~~---------------s------------- 210 (975)
T KOG0520|consen 172 --------QLAGQLSPI-FH-N-H--SSVNEDVAEINSNQTGNALGSVFGN---------------S------------- 210 (975)
T ss_pred --------HhhcccCcc-hh-c-c--cchHHHHHHHhhhccccccccccCc---------------c-------------
Confidence 222222220 00 0 1 2457888876655554332222110 0
Q ss_pred CCCCCCCCCCCCcCCCC-cccccccccCCCCCcccCCCCCccccc--cccccccccc---cccccccCccccccccc--c
Q 001759 246 INHGSGSSMWPQIDNSS-RNATSVLDQHGHQNFYVGQPSGADFIT--HKLTDARLAS---DSTIANIGTCGERLITD--I 317 (1017)
Q Consensus 246 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~ 317 (1017)
..|...++..+..+ |..+...+. ++++..|....+.. +.+....... ...-+|.+..+...+.+ +
T Consensus 211 ---~~h~i~~~~~~s~~~~~~~p~s~~----s~~~~~~~~~~~~~~~~~~~~rs~~~s~~te~l~n~~~~~~~~g~s~s~ 283 (975)
T KOG0520|consen 211 ---RNHRIRLHEVNSLDPLYKLPVSDD----SLNLSAPKPIDLPKGPTSVKQRSSSPSYFTEILGNAPSGLVSQGNSLSS 283 (975)
T ss_pred ---hhhhhcccccCCccccccccccCC----ccccccCCCcccccCCcchhhcCCCCcchhhhcccCCCccccccccccc
Confidence 11111111111111 222222211 00000010000000 0000000000 00000000000000000 0
Q ss_pred ---ccccccccccccchhhhccccccccccccCCCCCccc--cc----cccc----CCCCCcc--ccccccccCcchhhh
Q 001759 318 ---DVHAVTTSSQGASQVLLEHNFNLINNQCQNCPVPEVT--VA----SVSQ----AGIKPKE--ELGELKKLDSFGRWM 382 (1017)
Q Consensus 318 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~----~~~~~~~--~~~~~~~~dsf~~w~ 382 (1017)
...+|+.........+...+|..+++........... .. ..+. .....+. .++|||+.|+|++||
T Consensus 284 ~l~~i~~~~~~~~~~~~~p~~~nf~~~ss~~s~~~~~~~g~g~~~~~~sa~~~~~P~~~~~~~~~~~~~l~sgdsf~~~~ 363 (975)
T KOG0520|consen 284 SLQRISSFTGLDNAAYEQPNSQNFEPNSSLNSHVTGQSYGQGLQARSPSATSESRPITSAADAALSELGLKSGDSFSRWA 363 (975)
T ss_pred chhhcccccccccccccCCccccccccccCCCCccccccCccccCCCcccccccCCcchhhccccccccccccccccchh
Confidence 0001111000000000000111111100000000000 00 0000 0111221 278999999999999
Q ss_pred HhhhcCCcCCCCccCCCCCcccccccccccccccccccccccccccCCCCcCcCCceEEEEeecCccccCCceEEEEEcc
Q 001759 383 DQEIGGDCDDSLMASDSGNYWNTLDAENDDKEVSSLSHHMQLEMDSLGPSLSQEQLFSIRDFSPDWAYSGAETKVLIIGM 462 (1017)
Q Consensus 383 ~~~l~~~~~~~~~~ss~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~q~f~I~d~sP~w~~~~ggtkVlV~G~ 462 (1017)
+ .+++ ..|..-.++.+..|..+. ....+++++ +++|. .+|+|+|+||||+|+|+.||+||+|+|+
T Consensus 364 ~-t~~e-~~d~~q~~s~~~~~~p~~--~~~~~~~s~----------~~~S~-p~qlf~I~DfSP~Wsy~~ggvKVlV~G~ 428 (975)
T KOG0520|consen 364 S-TFGE-ISDLGQDPSGEAVWTPEN--DPMGPPGSF----------LSPSS-PEQLFTITDFSPEWSYLDGGVKVLVTGF 428 (975)
T ss_pred h-hhcc-cccCCCCCccccccccCC--CcCCCcccc----------cCCCC-CcceeeeeccCcccccCCCCcEEEEecC
Confidence 7 6766 444442233355676662 222233322 55663 3999999999999999999999999998
Q ss_pred CCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCCCCceeeEEEecC-CCcccCcceeeeeecCCCCCCCCccccC
Q 001759 463 FLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGS-NRLACSEVREFEYREKPSKAGYPVASKI 541 (1017)
Q Consensus 463 ~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph~pG~Vp~~Vt~~-n~~~cSEv~~FEyr~~~~~~~~~~~~~~ 541 (1017)
+ .+.+...|+||||+++|||++|++|||||+||||.||+|+|||+|+ ++.+|||+++|+|...+....+..+ ..
T Consensus 429 ~----~~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~h~~G~V~l~V~c~~~~~~~se~ref~~~~~~~~~~d~~s-~~ 503 (975)
T KOG0520|consen 429 P----QDETRSNYSCMFGEQRVPAELIQEGVLRCYAPPHEPGVVNLQVTCRISGLACSEVREFAYLVQPSQQIDKLS-WE 503 (975)
T ss_pred c----cccCCCceEEEeCCccccHHHhhcceeeeecCccCCCeEEEEEEecccceeeeeehheeecccCcccccccc-cc
Confidence 3 3456899999999999999999999999999999999999999999 8999999999999999888776544 11
Q ss_pred CCchHHHHHHHHHHhhccCCCc-ccccccccchhhhh--hHHHHhhcccCCCCcccc-ccccccccccC---CCchHHHH
Q 001759 542 APEDEVRLQTRLAKFLYLDPER-KWFDCTIEDCNKCK--LKNTIYSMRGDSEKDWGR-VDESPMAIEGD---CPNSRDKL 614 (1017)
Q Consensus 542 ~~~~e~~Lq~Rl~~LL~~~~~~-~~~~~~~~~~ek~~--l~~~i~~l~~~~~~~w~~-l~e~l~~~~~~---~~~~~~~l 614 (1017)
....++.|+.||..|+...... .+....++..+... +..++..+ .+.|.. + +.....+ ..+.++.+
T Consensus 504 d~~~~~sl~~rl~~~~~r~~~~~~s~~~~~n~~~~~~~~l~skv~~l----~~~~~~r~---~~~~~~~~~~~~~~r~~l 576 (975)
T KOG0520|consen 504 DFLFQMSLLHRLETMLNRKQSILSSKPSTENTSDAESGNLASKVVHL----LNEWAYRL---LKSISENLSSSVNFRDML 576 (975)
T ss_pred cchhhhHHHHHHHHHHHHhHhHhhccCCccccccccchhHHHHHHHH----HHHHHHHH---HhhHhhhccccCCCcchH
Confidence 3445566677777776622222 22333344444444 66777766 556666 4 3333222 27788999
Q ss_pred HHHHHHhhHHHHHHHHHHhC-CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHH
Q 001759 615 IQNLLRNRLCEWLVWKIHEG-GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREET 693 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~-Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ei 693 (1017)
|..++++.++.||++++++. |...+..|.+|+..+|++|..|+.+.+.+.+..|..++++|..||||||||+.+|++.+
T Consensus 577 llhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l 656 (975)
T KOG0520|consen 577 LLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKL 656 (975)
T ss_pred HHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHH
Confidence 99999999999999999997 88889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCcc-chhHHHHHhHHHHHHHH
Q 001759 694 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGM-DNVAAALAAEKANETAA 772 (1017)
Q Consensus 694 V~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~-G~Ta~~ia~~~~v~~L~ 772 (1017)
+..|++.|++.++.++|++.++.|.|+..+|..+||.++..+|.++.+..++.++...+... +.++..- ..+...
T Consensus 657 ~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~L~~~~~~~~~~~~~~s~~~~~~~----~~~t~~ 732 (975)
T KOG0520|consen 657 VASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKALSAHLSNLELADPNLSADSEEDK----AEKTSS 732 (975)
T ss_pred HHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhHHHHHHhhccccccccCCCchhhh----hhhccC
Confidence 99999999999999999999999999999999999999999999999888888887776321 2222222 122221
Q ss_pred HcCCCCCCCchhhhhhhhchHHHHHhHHHHHHHHHHHHHHhhhhhhhcccCCch-----hHHHHHHHHhccccccccchh
Q 001759 773 QIGVQSDGPAAEQLSLRGSLAAVRKSAHAAALIQQAFRVRSFRHRQSIQSSDDV-----SEVSVDLVALGSLNKVSKMIH 847 (1017)
Q Consensus 773 e~~a~~~~~~~~~lslkdsL~AVR~A~~AA~rIQ~afR~~s~Rkr~L~~~~~~~-----~e~~~sila~q~~~r~~~~~~ 847 (1017)
+. +.+.+.+..+|+|+|+|+|+|+++|++||++||+++++++.+.....+. .+.+.++.+. .+-.
T Consensus 733 e~---s~~~~~~~~sl~Dtl~avrdAa~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~-------~a~~ 802 (975)
T KOG0520|consen 733 EG---SPNPDEDSDSLKDTLAAVRDAAQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKAS-------SAFS 802 (975)
T ss_pred CC---CCCCCccccccccccccccchHHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcc-------cchh
Confidence 22 2233344556999999999999999999999999999988876654322 3333333332 2111
Q ss_pred -h-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 001759 848 -F-EDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVG 925 (1017)
Q Consensus 848 -~-~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwrrkr~~Lr~~~~e 925 (1017)
+ ++....||..||+.||||+.|++|+.+|+.+|+||+++||++.||+|+++.|||+.+||+++|||++++++|+|+.+
T Consensus 803 ~~~~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~ 882 (975)
T KOG0520|consen 803 MCDDRSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGR 882 (975)
T ss_pred cCccccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccc
Confidence 1 33567899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhh
Q 001759 926 NSTANVA-SENEKTDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCD 989 (1017)
Q Consensus 926 ~~~~~~~-~~~~~~~~~d~L~~~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~ 989 (1017)
...+... +....++.++|+|+.++++++++++|+++||+|+|+++||+|||||+.-+++.|...
T Consensus 883 ~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~~~~~~~~~~ 947 (975)
T KOG0520|consen 883 ALFEEQETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLLVYEQYQESY 947 (975)
T ss_pred cchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhh
Confidence 7554322 234558999999999999999999999999999999999999999998887777654
No 2
>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=4e-62 Score=454.94 Aligned_cols=117 Identities=67% Similarity=1.236 Sum_probs=114.6
Q ss_pred HHHHHhhcCChHHHHHHHHcccccccCCCCCCCCCCCceeeeehhhhhhhhccCccceeccCCCchHHHhhhcccCCEee
Q 001759 19 LQEAQYRWLRPTEICEILRNYQKFHLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSIDV 98 (1017)
Q Consensus 19 ~~~~~~~w~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~dg~~w~~~~~~~~~~e~h~~l~~~~~~~ 98 (1017)
++| +.|||+|+||++||+||++|+|..+||++|+|||+|||||+++||||||||+|||||||||||||||||||||+|+
T Consensus 2 ~~~-~~rWl~~~Ei~~IL~n~~~~~~~~~~~~rP~sGslfLf~Rk~~r~fRkDG~~WrKkkdgktvRE~HekLKv~~~e~ 80 (118)
T PF03859_consen 2 LKE-KTRWLKPEEIAFILLNYEKFQIWLEPPNRPPSGSLFLFNRKVVRFFRKDGHNWRKKKDGKTVREDHEKLKVGGVEV 80 (118)
T ss_pred chH-hcccCCHHHHHHHHHhHHhCCcccCCCCCCCCceEEEEEchHhhhhhcccceeEEcCCCCchhhhhhhhccCceee
Confidence 445 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccCccccceeeeeccCCCccEEEEeeeccc
Q 001759 99 LHCYYAHGEDNENFQRRSYWMLDGQLEHIVLVHYREVK 136 (1017)
Q Consensus 99 ~~~~y~~~~~~~~f~rr~y~~~~~~~~~~v~vhy~~~~ 136 (1017)
||||||||++|||||||||||||++|+||||||||||+
T Consensus 81 l~~~Yah~~~~~~F~RR~Ywll~~~~~~iVLVHY~~v~ 118 (118)
T PF03859_consen 81 LNCYYAHSEDNPTFHRRCYWLLDPPYEHIVLVHYLDVK 118 (118)
T ss_pred eEEEEEeeccCCCeeeEEEEccCCCCceEEEEEeeecC
Confidence 99999999999999999999999999999999999985
No 3
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.6e-22 Score=196.12 Aligned_cols=127 Identities=28% Similarity=0.342 Sum_probs=66.6
Q ss_pred CCccCC-CCCcHHHHHHHcCChhhHHHHH-hCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCC
Q 001759 638 PNVIDD-GGQGVVHLAAALGYEWAMRPII-ATGVSPNFRDARGRTALHWASYFGREETVIMLVKL-GAAPGAVEDPTPAF 714 (1017)
Q Consensus 638 ~n~~D~-~G~TpLH~Aa~~G~~~iV~~LL-~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~-GAdvn~~dd~~~~d 714 (1017)
+|.++. +|+|||||||..|+.++|.+|+ ..++.+|.+|..||||||+||..|+.++|+.|+.+ |+++|+.+
T Consensus 30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~t------ 103 (226)
T KOG4412|consen 30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATT------ 103 (226)
T ss_pred hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceec------
Confidence 344433 5555555555555555555555 34455555555555555555555555555555544 55555555
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHH----HhHHHHHHHHHcCC
Q 001759 715 PGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL----AAEKANETAAQIGV 776 (1017)
Q Consensus 715 ~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~i----a~~~~v~~L~e~~a 776 (1017)
..|.||||||+..|..+|+++|++.| +.++++|+. |.||++. |..++++.|+..++
T Consensus 104 n~G~T~LHyAagK~r~eIaqlLle~g-----a~i~~kD~~-~qtplHRAAavGklkvie~Li~~~a 163 (226)
T KOG4412|consen 104 NGGQTCLHYAAGKGRLEIAQLLLEKG-----ALIRIKDKQ-GQTPLHRAAAVGKLKVIEYLISQGA 163 (226)
T ss_pred CCCcceehhhhcCChhhHHHHHHhcC-----CCCcccccc-cCchhHHHHhccchhhHHHHHhcCC
Confidence 35555555555555555555555555 455555554 5553332 23444555555554
No 4
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4e-21 Score=191.72 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH-hCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhC-CCCCCccCCCCCchhhHHHh
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIH-EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIAT-GVSPNFRDARGRTALHWASY 687 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Ll-e~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~-Gadvn~~D~~G~TPLH~Aa~ 687 (1017)
...++||-++.-+-.+ ++..|+ ..+..+|.+|..||||||.||..|+.++|+.|+.. |+|+|..+..|.|+|||||.
T Consensus 37 D~Rt~LHwa~S~g~~e-iv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAag 115 (226)
T KOG4412|consen 37 DGRTPLHWACSFGHVE-IVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAG 115 (226)
T ss_pred cCCceeeeeeecCchh-HHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhc
Confidence 4456677777666444 334444 77899999999999999999999999999999988 99999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----
Q 001759 688 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA---- 763 (1017)
Q Consensus 688 ~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia---- 763 (1017)
.|+.+|+.+|+++|+.+++.| ..|.||||-|+..|...++++|+..| +.++..|+. |.||++.+
T Consensus 116 K~r~eIaqlLle~ga~i~~kD------~~~qtplHRAAavGklkvie~Li~~~-----a~~n~qDk~-G~TpL~~al~e~ 183 (226)
T KOG4412|consen 116 KGRLEIAQLLLEKGALIRIKD------KQGQTPLHRAAAVGKLKVIEYLISQG-----APLNTQDKY-GFTPLHHALAEG 183 (226)
T ss_pred CChhhHHHHHHhcCCCCcccc------cccCchhHHHHhccchhhHHHHHhcC-----CCCCccccc-CccHHHHHHhcc
Confidence 999999999999999999988 79999999999999999999999999 889999999 99998887
Q ss_pred hHHHHHHHHHcCC
Q 001759 764 AEKANETAAQIGV 776 (1017)
Q Consensus 764 ~~~~v~~L~e~~a 776 (1017)
+..+...|+..+|
T Consensus 184 ~~d~a~lLV~~gA 196 (226)
T KOG4412|consen 184 HPDVAVLLVRAGA 196 (226)
T ss_pred CchHHHHHHHhcc
Confidence 4455667777776
No 5
>PHA02791 ankyrin-like protein; Provisional
Probab=99.78 E-value=2.8e-18 Score=190.25 Aligned_cols=151 Identities=12% Similarity=0.035 Sum_probs=130.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCC-chhhHHHhcCC
Q 001759 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGR-TALHWASYFGR 690 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~-TPLH~Aa~~G~ 690 (1017)
.++|+.++..+.. .+++.|+..|++++.+|..|+||||+||..|+.+++++|+.+|++++.++..|+ ||||+|+..|+
T Consensus 62 ~TpLh~Aa~~g~~-eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~ 140 (284)
T PHA02791 62 EFPLHQAATLEDT-KIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 140 (284)
T ss_pred CCHHHHHHHCCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCC
Confidence 5788888887744 456788899999999999999999999999999999999999999999999986 89999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchh-----HHHHHhH
Q 001759 691 EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNV-----AAALAAE 765 (1017)
Q Consensus 691 ~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~T-----a~~ia~~ 765 (1017)
.++|++|+++|++. .+. ..|.||||+|+..|+.+++++|+++| ++++.++.. |.+ |+..+..
T Consensus 141 ~eivk~LL~~~~~~--~d~-----~~g~TpLh~Aa~~g~~eiv~lLL~~g-----Ad~n~~d~~-g~t~~L~~Aa~~~~~ 207 (284)
T PHA02791 141 VSIVSYFLSEIPST--FDL-----AILLSCIHITIKNGHVDMMILLLDYM-----TSTNTNNSL-LFIPDIKLAIDNKDL 207 (284)
T ss_pred HHHHHHHHhcCCcc--ccc-----ccCccHHHHHHHcCCHHHHHHHHHCC-----CCCCcccCC-CCChHHHHHHHcCCH
Confidence 99999999987643 221 25899999999999999999999999 556666665 665 4566678
Q ss_pred HHHHHHHHcCC
Q 001759 766 KANETAAQIGV 776 (1017)
Q Consensus 766 ~~v~~L~e~~a 776 (1017)
++++.|++.++
T Consensus 208 e~v~lLl~~Ga 218 (284)
T PHA02791 208 EMLQALFKYDI 218 (284)
T ss_pred HHHHHHHHCCC
Confidence 99999999998
No 6
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.76 E-value=3.1e-18 Score=198.78 Aligned_cols=168 Identities=23% Similarity=0.245 Sum_probs=132.8
Q ss_pred HHHHHHhhHHHHHHHHHHhC-CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccC-CCCCchhhHHHhcCCHH
Q 001759 615 IQNLLRNRLCEWLVWKIHEG-GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRD-ARGRTALHWASYFGREE 692 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~-Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D-~~G~TPLH~Aa~~G~~e 692 (1017)
+..+++.+..+.+.. +++. |.++|..|.+|-|+|||||.+++.+++++||++|++||..+ .-|-|||||||++|+..
T Consensus 48 ~v~A~q~G~l~~v~~-lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~ 126 (600)
T KOG0509|consen 48 IVKATQYGELETVKE-LVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHIS 126 (600)
T ss_pred hhhHhhcchHHHHHH-HHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHH
Confidence 345566665555544 5555 88999999999999999999999999999999999999988 55889999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHH----H
Q 001759 693 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKA----N 768 (1017)
Q Consensus 693 iV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~----v 768 (1017)
+|.+|+++||+|+++| ..|.||||+|+..||.-++.||+.+| ++++++|.. |+||+..++-++ +
T Consensus 127 vv~lLlqhGAdpt~~D------~~G~~~lHla~~~~~~~~vayll~~~-----~d~d~~D~~-grTpLmwAaykg~~~~v 194 (600)
T KOG0509|consen 127 VVDLLLQHGADPTLKD------KQGLTPLHLAAQFGHTALVAYLLSKG-----ADIDLRDNN-GRTPLMWAAYKGFALFV 194 (600)
T ss_pred HHHHHHHcCCCCceec------CCCCcHHHHHHHhCchHHHHHHHHhc-----ccCCCcCCC-CCCHHHHHHHhcccHHH
Confidence 9999999999998888 69999999999999999999999988 788888888 999888876544 5
Q ss_pred HHHHHcCCCCCCCchhhhhhhhchHHHHHhHH
Q 001759 769 ETAAQIGVQSDGPAAEQLSLRGSLAAVRKSAH 800 (1017)
Q Consensus 769 ~~L~e~~a~~~~~~~~~lslkdsL~AVR~A~~ 800 (1017)
..|+..++... ..-.++..++++.|..
T Consensus 195 ~~LL~f~a~~~-----~~d~~~g~TpLHwa~~ 221 (600)
T KOG0509|consen 195 RRLLKFGASLL-----LTDDNHGNTPLHWAVV 221 (600)
T ss_pred HHHHHhccccc-----ccccccCCchHHHHHh
Confidence 55666665111 1113456667766543
No 7
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.75 E-value=1.4e-17 Score=176.98 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHhh-HHHHHHHHHHhCCCCCCccC-CCCCcHHHHHHHc---CChhhHHHHHhCCCCCCccCCCCCchhhH
Q 001759 610 SRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVID-DGGQGVVHLAAAL---GYEWAMRPIIATGVSPNFRDARGRTALHW 684 (1017)
Q Consensus 610 ~~~~ll~~al~~~-l~e~Lv~~Lle~Gad~n~~D-~~G~TpLH~Aa~~---G~~~iV~~LL~~Gadvn~~D~~G~TPLH~ 684 (1017)
...++||.++..+ ....+++.|++.|+++|.++ ..|.||||+|+.. ++.+++++|+++|+++|.+|..|.||||+
T Consensus 50 ~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~ 129 (209)
T PHA02859 50 LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHM 129 (209)
T ss_pred cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 3456788777643 23567788999999999997 4899999998764 47899999999999999999999999999
Q ss_pred HHh--cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHH-HHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHH
Q 001759 685 ASY--FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADL-ASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 761 (1017)
Q Consensus 685 Aa~--~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhl-Aa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ 761 (1017)
|+. .++.+++++|+++|++++.++ ..|.||||. |+..|+.+++++|++.| ++++.++.. |.||++
T Consensus 130 a~~~~~~~~~iv~~Li~~gadin~~d------~~g~t~Lh~~a~~~~~~~iv~~Ll~~G-----adi~~~d~~-g~tpl~ 197 (209)
T PHA02859 130 YMCNFNVRINVIKLLIDSGVSFLNKD------FDNNNILYSYILFHSDKKIFDFLTSLG-----IDINETNKS-GYNCYD 197 (209)
T ss_pred HHHhccCCHHHHHHHHHcCCCccccc------CCCCcHHHHHHHhcCCHHHHHHHHHcC-----CCCCCCCCC-CCCHHH
Confidence 876 478999999999999999887 799999995 56788999999999999 778888888 999999
Q ss_pred HHhHH
Q 001759 762 LAAEK 766 (1017)
Q Consensus 762 ia~~~ 766 (1017)
++...
T Consensus 198 la~~~ 202 (209)
T PHA02859 198 LIKFR 202 (209)
T ss_pred HHhhh
Confidence 98543
No 8
>PHA02946 ankyin-like protein; Provisional
Probab=99.73 E-value=3.8e-17 Score=192.59 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=125.5
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC-
Q 001759 612 DKLIQNLLR-NRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG- 689 (1017)
Q Consensus 612 ~~ll~~al~-~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G- 689 (1017)
..++|.++. .+....+++.|++.|+++|.+|..|.||||+||..|+.++|++||++|+++|.+|..|+||||+|+..+
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~ 117 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence 456665553 333456788889999999999999999999999999999999999999999999999999999998866
Q ss_pred -CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh----
Q 001759 690 -REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA---- 764 (1017)
Q Consensus 690 -~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~---- 764 (1017)
..+++++|+++|++++...+ ..|.|||| |+..|+.+++++|++.| ++++.++.. |.||++.+.
T Consensus 118 ~~~e~v~lLl~~Gadin~~~d-----~~g~tpL~-aa~~~~~~vv~~Ll~~g-----ad~~~~d~~-G~t~Lh~A~~~~~ 185 (446)
T PHA02946 118 EVIERINLLVQYGAKINNSVD-----EEGCGPLL-ACTDPSERVFKKIMSIG-----FEARIVDKF-GKNHIHRHLMSDN 185 (446)
T ss_pred chHHHHHHHHHcCCCcccccC-----CCCCcHHH-HHHCCChHHHHHHHhcc-----ccccccCCC-CCCHHHHHHHhcC
Confidence 47899999999999986432 68889986 66678888899998888 666777777 888876653
Q ss_pred --HHHHHHHHHcCC
Q 001759 765 --EKANETAAQIGV 776 (1017)
Q Consensus 765 --~~~v~~L~e~~a 776 (1017)
...++.|++.++
T Consensus 186 ~~~~~v~~Ll~~Ga 199 (446)
T PHA02946 186 PKASTISWMMKLGI 199 (446)
T ss_pred CCHHHHHHHHHcCC
Confidence 356778888886
No 9
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.73 E-value=4.3e-17 Score=193.75 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=123.7
Q ss_pred HHHHHHHhCCCCCCccCCC-CCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCC
Q 001759 626 WLVWKIHEGGKGPNVIDDG-GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 704 (1017)
Q Consensus 626 ~Lv~~Lle~Gad~n~~D~~-G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdv 704 (1017)
.+++.|++.|+++|..|.. |.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|++.|+++
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i 227 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST 227 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 4677888999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHhc-CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH--hHHHHHHHHHcCC
Q 001759 705 GAVEDPTPAFPGGQTAADLASSR-GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA--AEKANETAAQIGV 776 (1017)
Q Consensus 705 n~~dd~~~~d~~G~TPLhlAa~~-G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia--~~~~v~~L~e~~a 776 (1017)
+.++ ..|.||||+|+.. ++.+++++|+++| ++++.++...|.||++.+ ..+.++.|++.++
T Consensus 228 n~~d------~~g~TpLh~A~~~~~~~~iv~~Ll~~g-----advn~~~~~~g~TpLh~A~~~~~~v~~Ll~~ga 291 (477)
T PHA02878 228 DARD------KCGNTPLHISVGYCKDYDILKLLLEHG-----VDVNAKSYILGLTALHSSIKSERKLKLLLEYGA 291 (477)
T ss_pred CCCC------CCCCCHHHHHHHhcCCHHHHHHHHHcC-----CCCCccCCCCCCCHHHHHccCHHHHHHHHHCCC
Confidence 9887 6999999999975 7899999999999 566666652388988776 3567888999998
No 10
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.72 E-value=5.8e-17 Score=192.71 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=134.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCh---------------------------------
Q 001759 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYE--------------------------------- 658 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~--------------------------------- 658 (1017)
-++||.|+..+..+ +++.|++.|+++|..|..|+||||+||..|+.
T Consensus 38 ~tPLh~A~~~g~~e-~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei 116 (477)
T PHA02878 38 FIPLHQAVEARNLD-VVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI 116 (477)
T ss_pred cchHHHHHHcCCHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence 35789999887554 56778999999999999999999999987543
Q ss_pred -------------------------------hhHHHHHhCCCCCCccCCC-CCchhhHHHhcCCHHHHHHHHHcCCCCCC
Q 001759 659 -------------------------------WAMRPIIATGVSPNFRDAR-GRTALHWASYFGREETVIMLVKLGAAPGA 706 (1017)
Q Consensus 659 -------------------------------~iV~~LL~~Gadvn~~D~~-G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~ 706 (1017)
+++++|+++|+++|.+|.. |+||||+||..|+.+++++|+++|++++.
T Consensus 117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~ 196 (477)
T PHA02878 117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI 196 (477)
T ss_pred HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC
Confidence 2677788889999999999 99999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh-----HHHHHHHHHcCC
Q 001759 707 VEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA-----EKANETAAQIGV 776 (1017)
Q Consensus 707 ~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~-----~~~v~~L~e~~a 776 (1017)
.+ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++.+. .++++.|++.++
T Consensus 197 ~d------~~g~tpLh~A~~~~~~~iv~~Ll~~g-----a~in~~d~~-g~TpLh~A~~~~~~~~iv~~Ll~~ga 259 (477)
T PHA02878 197 PD------KTNNSPLHHAVKHYNKPIVHILLENG-----ASTDARDKC-GNTPLHISVGYCKDYDILKLLLEHGV 259 (477)
T ss_pred cC------CCCCCHHHHHHHhCCHHHHHHHHHcC-----CCCCCCCCC-CCCHHHHHHHhcCCHHHHHHHHHcCC
Confidence 87 69999999999999999999999999 677788887 999987664 478889999997
No 11
>PHA02791 ankyrin-like protein; Provisional
Probab=99.72 E-value=5.8e-17 Score=179.83 Aligned_cols=151 Identities=17% Similarity=0.091 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 689 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G 689 (1017)
...+.|+.++..+. ..+++.|++.|++++..+ |.||||+|+..|+.++|++|+..|++++.+|..|+||||+||..|
T Consensus 29 ~G~TpLh~Aa~~g~-~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g 105 (284)
T PHA02791 29 HGHSALYYAIADNN-VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSG 105 (284)
T ss_pred CCCcHHHHHHHcCC-HHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 45678898988774 456678999999998765 689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCC-CCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----h
Q 001759 690 REETVIMLVKLGAAPGAVEDPTPAFPGG-QTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----A 764 (1017)
Q Consensus 690 ~~eiV~~LL~~GAdvn~~dd~~~~d~~G-~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~ 764 (1017)
+.+++++|+++|++++..+ ..| .||||+|+..|+.+++++|++.|... .+ . .. |.||++++ +
T Consensus 106 ~~eivk~Ll~~gadin~~~------~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d--~--~~-g~TpLh~Aa~~g~ 172 (284)
T PHA02791 106 NMQTVKLFVKKNWRLMFYG------KTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FD--L--AI-LLSCIHITIKNGH 172 (284)
T ss_pred CHHHHHHHHHCCCCcCccC------CCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cc--c--cc-CccHHHHHHHcCC
Confidence 9999999999999998877 466 58999999999999999999987321 11 1 22 66766665 5
Q ss_pred HHHHHHHHHcCC
Q 001759 765 EKANETAAQIGV 776 (1017)
Q Consensus 765 ~~~v~~L~e~~a 776 (1017)
.++++.|++.++
T Consensus 173 ~eiv~lLL~~gA 184 (284)
T PHA02791 173 VDMMILLLDYMT 184 (284)
T ss_pred HHHHHHHHHCCC
Confidence 688999999997
No 12
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.72 E-value=1.2e-17 Score=193.81 Aligned_cols=141 Identities=23% Similarity=0.255 Sum_probs=91.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCCCCCccC-CCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001759 613 KLIQNLLRNRLCEWLVWKIHEGGKGPNVID-DGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 613 ~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D-~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ 691 (1017)
.+||-+..++-. .+++.|+++|+++|..+ ..|.|||||||++|+..+|.+|+++|||++.+|..|.||||.||..|+.
T Consensus 80 tlLHWAAiNNrl-~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~ 158 (600)
T KOG0509|consen 80 TLLHWAAINNRL-DVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHT 158 (600)
T ss_pred cceeHHHHcCcH-HHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCch
Confidence 445544443322 24456666777777666 4566777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH
Q 001759 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 692 eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~ 765 (1017)
-+|.+||.+|+++|.+| .+|+||||+|+.+|+...+..|+..| +++...|+.-|.||++++..
T Consensus 159 ~~vayll~~~~d~d~~D------~~grTpLmwAaykg~~~~v~~LL~f~-----a~~~~~d~~~g~TpLHwa~~ 221 (600)
T KOG0509|consen 159 ALVAYLLSKGADIDLRD------NNGRTPLMWAAYKGFALFVRRLLKFG-----ASLLLTDDNHGNTPLHWAVV 221 (600)
T ss_pred HHHHHHHHhcccCCCcC------CCCCCHHHHHHHhcccHHHHHHHHhc-----ccccccccccCCchHHHHHh
Confidence 77777777776666666 46777777777777766666777666 55555552226666666543
No 13
>PHA02798 ankyrin-like protein; Provisional
Probab=99.71 E-value=8.3e-17 Score=192.02 Aligned_cols=161 Identities=14% Similarity=0.050 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHh----hHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC---ChhhHHHHHhCCCCCCccCCCCCchh
Q 001759 610 SRDKLIQNLLRN----RLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG---YEWAMRPIIATGVSPNFRDARGRTAL 682 (1017)
Q Consensus 610 ~~~~ll~~al~~----~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G---~~~iV~~LL~~Gadvn~~D~~G~TPL 682 (1017)
...++|+.++.. .-...+++.|+++|+++|.+|..|+||||+|+..| +.+++++|+++|++++.+|..|.|||
T Consensus 70 ~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL 149 (489)
T PHA02798 70 EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTML 149 (489)
T ss_pred CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHH
Confidence 334556655532 12356778888999999999999999999999876 67899999999999999999999999
Q ss_pred hHHHhcCC---HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhc----CcHHHHHHHHHccCCCCC----------
Q 001759 683 HWASYFGR---EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR----GHKGIAGYLAEADLSSHL---------- 745 (1017)
Q Consensus 683 H~Aa~~G~---~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~----G~~~iv~~LLe~Ga~~~~---------- 745 (1017)
|+|+..|+ .+++++|++.|++++..++ ..|.||||.++.. ++.+++++|+++|++.+.
T Consensus 150 ~~a~~~~~~~~~~vv~~Ll~~gadin~~~~-----~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~ 224 (489)
T PHA02798 150 QVYLQSNHHIDIEIIKLLLEKGVDINTHNN-----KEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFM 224 (489)
T ss_pred HHHHHcCCcchHHHHHHHHHhCCCcccccC-----cCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHH
Confidence 99999887 8999999999999887753 4678888877653 467888888888765432
Q ss_pred ------------------------cCCccccCccchhHHHHH----hHHHHHHHHHcCC
Q 001759 746 ------------------------SSLTVNENGMDNVAAALA----AEKANETAAQIGV 776 (1017)
Q Consensus 746 ------------------------a~l~l~d~~~G~Ta~~ia----~~~~v~~L~e~~a 776 (1017)
++++.++.. |.||++.| ..++++.|++.||
T Consensus 225 ~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~-G~TPL~~A~~~~~~~~v~~LL~~GA 282 (489)
T PHA02798 225 EYLNSLLYDNKRFKKNILDFIFSYIDINQVDEL-GFNPLYYSVSHNNRKIFEYLLQLGG 282 (489)
T ss_pred HHHHHHHhhcccchHHHHHHHHhcCCCCCcCcC-CccHHHHHHHcCcHHHHHHHHHcCC
Confidence 356777777 88877765 4567888888887
No 14
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.71 E-value=7.2e-17 Score=197.48 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHhh-HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCh--hhHHHHHhCCCCCCccCCCCCchhhHH-
Q 001759 610 SRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYE--WAMRPIIATGVSPNFRDARGRTALHWA- 685 (1017)
Q Consensus 610 ~~~~ll~~al~~~-l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~--~iV~~LL~~Gadvn~~D~~G~TPLH~A- 685 (1017)
...++||.++... ....+++.|++.|+++|.+|..|.||||+|+..|+. ++|++||++||++|.+|..|+||||+|
T Consensus 176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai 255 (764)
T PHA02716 176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI 255 (764)
T ss_pred CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3456777665431 123577889999999999999999999999999964 899999999999999999999999975
Q ss_pred ------------------------------------HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHh--c
Q 001759 686 ------------------------------------SYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASS--R 727 (1017)
Q Consensus 686 ------------------------------------a~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~--~ 727 (1017)
+..|+.+++++|+++|++++..+ ..|+||||+|+. .
T Consensus 256 ~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD------~~G~TPLH~Aaa~~~ 329 (764)
T PHA02716 256 INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKD------SAGRTCLHQYILRHN 329 (764)
T ss_pred HhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccC------CCCCCHHHHHHHHhC
Confidence 34578899999999999998887 699999999864 4
Q ss_pred CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH------------------hHHHHHHHHHcCC
Q 001759 728 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA------------------AEKANETAAQIGV 776 (1017)
Q Consensus 728 G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia------------------~~~~v~~L~e~~a 776 (1017)
|+.+++++|++.| ++++.++.. |.||++.+ ..++++.|++.|+
T Consensus 330 ~~~eIVklLLe~G-----ADIN~kD~~-G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA 390 (764)
T PHA02716 330 ISTDIIKLLHEYG-----NDLNEPDNI-GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA 390 (764)
T ss_pred CCchHHHHHHHcC-----CCCccCCCC-CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC
Confidence 6889999999999 677888888 99999864 4588999999998
No 15
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.71 E-value=7.5e-17 Score=165.35 Aligned_cols=124 Identities=21% Similarity=0.179 Sum_probs=108.3
Q ss_pred HHHHHHHhhHHH---HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhh---HHHHHhCCCCCCccC-CCCCchhhHHH
Q 001759 614 LIQNLLRNRLCE---WLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWA---MRPIIATGVSPNFRD-ARGRTALHWAS 686 (1017)
Q Consensus 614 ll~~al~~~l~e---~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~i---V~~LL~~Gadvn~~D-~~G~TPLH~Aa 686 (1017)
.++.+++.+..+ .+++.|.+.|+.++.+|..|+||||+||..|+.++ +++|+..|+++|.+| ..|.||||+|+
T Consensus 23 ~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~ 102 (166)
T PHA02743 23 TFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAA 102 (166)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHH
Confidence 456666655543 34556778999999999999999999999998765 799999999999998 58999999999
Q ss_pred hcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCC
Q 001759 687 YFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSS 743 (1017)
Q Consensus 687 ~~G~~eiV~~LL~-~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~ 743 (1017)
..|+.+++++|+. .|++++..+ ..|.||||+|+..|+.+++++|+++|++.
T Consensus 103 ~~g~~~iv~~Ll~~~gad~~~~d------~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~ 154 (166)
T PHA02743 103 STKNYELAEWLCRQLGVNLGAIN------YQHETAYHIAYKMRDRRMMEILRANGAVC 154 (166)
T ss_pred HhCCHHHHHHHHhccCCCccCcC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999995 899998877 79999999999999999999999999443
No 16
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.71 E-value=2.1e-16 Score=168.14 Aligned_cols=149 Identities=15% Similarity=0.097 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC--ChhhHHHHHhCCCCCCccC-CCCCchhhHHHhc
Q 001759 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG--YEWAMRPIIATGVSPNFRD-ARGRTALHWASYF 688 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G--~~~iV~~LL~~Gadvn~~D-~~G~TPLH~Aa~~ 688 (1017)
.+.|+.++..+..+ +++.|++. +|..|..|.||||+|+..+ +.+++++|+++|+++|.++ ..|+||||+|+..
T Consensus 22 ~~pL~~A~~~~~~~-~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~ 97 (209)
T PHA02859 22 CNPLFYYVEKDDIE-GVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSF 97 (209)
T ss_pred CcHHHHHHHhCcHH-HHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh
Confidence 35577777776555 34455553 5778899999999999865 8999999999999999997 4899999998864
Q ss_pred ---CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHh--cCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH
Q 001759 689 ---GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASS--RGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 763 (1017)
Q Consensus 689 ---G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~--~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia 763 (1017)
++.+++++|+++|++++.++ ..|.||||+|+. .++.+++++|++.| ++++.++.. |.||++.+
T Consensus 98 ~~~~~~eiv~~Ll~~gadin~~d------~~G~TpLh~a~~~~~~~~~iv~~Li~~g-----adin~~d~~-g~t~Lh~~ 165 (209)
T PHA02859 98 NKNVEPEILKILIDSGSSITEED------EDGKNLLHMYMCNFNVRINVIKLLIDSG-----VSFLNKDFD-NNNILYSY 165 (209)
T ss_pred CccccHHHHHHHHHCCCCCCCcC------CCCCCHHHHHHHhccCCHHHHHHHHHcC-----CCcccccCC-CCcHHHHH
Confidence 57999999999999999987 799999999876 47899999999999 777788887 99988742
Q ss_pred -----hHHHHHHHHHcCC
Q 001759 764 -----AEKANETAAQIGV 776 (1017)
Q Consensus 764 -----~~~~v~~L~e~~a 776 (1017)
..++++.|++.++
T Consensus 166 a~~~~~~~iv~~Ll~~Ga 183 (209)
T PHA02859 166 ILFHSDKKIFDFLTSLGI 183 (209)
T ss_pred HHhcCCHHHHHHHHHcCC
Confidence 4678899999997
No 17
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.70 E-value=1.9e-16 Score=186.11 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001759 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ 691 (1017)
.++||.++..+..+ +++.|++.|+++|.+|..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.
T Consensus 125 ~T~Lh~A~~~~~~~-~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~ 203 (434)
T PHA02874 125 KTFLHYAIKKGDLE-SIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDY 203 (434)
T ss_pred ccHHHHHHHCCCHH-HHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 44555555554433 33445555666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh-----HH
Q 001759 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA-----EK 766 (1017)
Q Consensus 692 eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~-----~~ 766 (1017)
+++++|++.|++++..+ ..|.||||+|+..++ .++.+|+ .| ++++..+.. |.||++.+. .+
T Consensus 204 ~iv~~Ll~~g~~i~~~~------~~g~TpL~~A~~~~~-~~i~~Ll-~~-----~~in~~d~~-G~TpLh~A~~~~~~~~ 269 (434)
T PHA02874 204 ACIKLLIDHGNHIMNKC------KNGFTPLHNAIIHNR-SAIELLI-NN-----ASINDQDID-GSTPLHHAINPPCDID 269 (434)
T ss_pred HHHHHHHhCCCCCcCCC------CCCCCHHHHHHHCCh-HHHHHHH-cC-----CCCCCcCCC-CCCHHHHHHhcCCcHH
Confidence 66666666665555544 355555555555443 2333333 23 344555555 667666653 35
Q ss_pred HHHHHHHcCC
Q 001759 767 ANETAAQIGV 776 (1017)
Q Consensus 767 ~v~~L~e~~a 776 (1017)
+++.|++.++
T Consensus 270 iv~~Ll~~ga 279 (434)
T PHA02874 270 IIDILLYHKA 279 (434)
T ss_pred HHHHHHHCcC
Confidence 5666666665
No 18
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.69 E-value=1.8e-16 Score=187.87 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHhhH-HHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCC------Cchh
Q 001759 610 SRDKLIQNLLRNRL-CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARG------RTAL 682 (1017)
Q Consensus 610 ~~~~ll~~al~~~l-~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G------~TPL 682 (1017)
...++||.++..+. ...+++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..| .|||
T Consensus 140 ~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l 219 (480)
T PHA03100 140 DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPL 219 (480)
T ss_pred CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHH
Confidence 34567787777662 3445677888888888888888888888888888888888888888888888888 8888
Q ss_pred hHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHH
Q 001759 683 HWASYFGR--EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAA 760 (1017)
Q Consensus 683 H~Aa~~G~--~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~ 760 (1017)
|+|+..|+ .+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.||+
T Consensus 220 ~~a~~~~~~~~~iv~~Ll~~g~din~~d------~~g~TpL~~A~~~~~~~iv~~Ll~~g-----ad~n~~d~~-g~tpl 287 (480)
T PHA03100 220 HIAACYNEITLEVVNYLLSYGVPINIKD------VYGFTPLHYAVYNNNPEFVKYLLDLG-----ANPNLVNKY-GDTPL 287 (480)
T ss_pred HHHHHhCcCcHHHHHHHHHcCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCC-CCcHH
Confidence 88888888 888888888888888777 68899999999999999999999988 567777777 88877
Q ss_pred HHH----hHHHHHHHHHcCC
Q 001759 761 ALA----AEKANETAAQIGV 776 (1017)
Q Consensus 761 ~ia----~~~~v~~L~e~~a 776 (1017)
+.+ ..+.++.|++.++
T Consensus 288 ~~A~~~~~~~iv~~Ll~~g~ 307 (480)
T PHA03100 288 HIAILNNNKEIFKLLLNNGP 307 (480)
T ss_pred HHHHHhCCHHHHHHHHhcCC
Confidence 666 4577778887775
No 19
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.69 E-value=5.5e-17 Score=204.75 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=111.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001759 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ 691 (1017)
...++.++..+.. .+++.|++.|+++|..|..|+||||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.
T Consensus 526 ~~~L~~Aa~~g~~-~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~ 604 (823)
T PLN03192 526 ASNLLTVASTGNA-ALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH 604 (823)
T ss_pred hhHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 3456666666654 456778899999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHH
Q 001759 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKA 767 (1017)
Q Consensus 692 eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~ 767 (1017)
+++++|+..++..+. ..|.+|||+|+..|+.+++++|+++| ++++.+|.. |.||++.+ +.++
T Consensus 605 ~iv~~L~~~~~~~~~--------~~~~~~L~~Aa~~g~~~~v~~Ll~~G-----adin~~d~~-G~TpLh~A~~~g~~~i 670 (823)
T PLN03192 605 KIFRILYHFASISDP--------HAAGDLLCTAAKRNDLTAMKELLKQG-----LNVDSEDHQ-GATALQVAMAEDHVDM 670 (823)
T ss_pred HHHHHHHhcCcccCc--------ccCchHHHHHHHhCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHCCcHHH
Confidence 887777766554432 23456666666666666666666666 445555555 66655543 3455
Q ss_pred HHHHHHcCC
Q 001759 768 NETAAQIGV 776 (1017)
Q Consensus 768 v~~L~e~~a 776 (1017)
++.|++.+|
T Consensus 671 v~~Ll~~GA 679 (823)
T PLN03192 671 VRLLIMNGA 679 (823)
T ss_pred HHHHHHcCC
Confidence 666666665
No 20
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.69 E-value=2.5e-16 Score=183.52 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhCCCCCC-ccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC
Q 001759 611 RDKLIQNLLRNRLCEWLVWKIHEGGKGPN-VIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 689 (1017)
Q Consensus 611 ~~~ll~~al~~~l~e~Lv~~Lle~Gad~n-~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G 689 (1017)
..+.|+.++..+..+. ++.|++.|..++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus 68 ~~t~L~~A~~~g~~~~-v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 68 IESELHDAVEEGDVKA-VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred cccHHHHHHHCCCHHH-HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 3567888888876554 577888887764 46778999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccch-h----HHHHHh
Q 001759 690 REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDN-V----AAALAA 764 (1017)
Q Consensus 690 ~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~-T----a~~ia~ 764 (1017)
+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..+.. |. + |...+.
T Consensus 147 ~~~~v~~Ll~~g~~~~~~d------~~g~TpL~~A~~~g~~eiv~~Ll~~g-----a~~n~~~~~-~~~t~l~~A~~~~~ 214 (413)
T PHA02875 147 DIKGIELLIDHKACLDIED------CCGCTPLIIAMAKGDIAICKMLLDSG-----ANIDYFGKN-GCVAALCYAIENNK 214 (413)
T ss_pred CHHHHHHHHhcCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHhCC-----CCCCcCCCC-CCchHHHHHHHcCC
Confidence 9999999999999998887 69999999999999999999999999 555555555 43 4 444556
Q ss_pred HHHHHHHHHcCC
Q 001759 765 EKANETAAQIGV 776 (1017)
Q Consensus 765 ~~~v~~L~e~~a 776 (1017)
.+.++.|++.++
T Consensus 215 ~~iv~~Ll~~ga 226 (413)
T PHA02875 215 IDIVRLFIKRGA 226 (413)
T ss_pred HHHHHHHHHCCc
Confidence 789999999997
No 21
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.69 E-value=4e-16 Score=183.31 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCC-----------------------
Q 001759 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATG----------------------- 668 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~G----------------------- 668 (1017)
.++|+.++..+..+ +++.|++.|+++|..+..|.||||+|+..|+.+++++|+++|
T Consensus 36 ~tpL~~A~~~g~~~-iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g 114 (434)
T PHA02874 36 TTPLIDAIRSGDAK-IVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCG 114 (434)
T ss_pred CCHHHHHHHcCCHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCc
Confidence 45666666665443 445667777777777777777777777777777777766554
Q ss_pred CCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCC
Q 001759 669 VSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSL 748 (1017)
Q Consensus 669 advn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l 748 (1017)
++++.+|..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| +++
T Consensus 115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d------~~g~tpLh~A~~~~~~~iv~~Ll~~g-----~~~ 183 (434)
T PHA02874 115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED------DNGCYPIHIAIKHNFFDIIKLLLEKG-----AYA 183 (434)
T ss_pred CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcC------CCCCCHHHHHHHCCcHHHHHHHHHCC-----CCC
Confidence 3455667777777777777777777777777777777665 57777777777777777777777777 455
Q ss_pred ccccCccchhHHHHH----hHHHHHHHHHcCC
Q 001759 749 TVNENGMDNVAAALA----AEKANETAAQIGV 776 (1017)
Q Consensus 749 ~l~d~~~G~Ta~~ia----~~~~v~~L~e~~a 776 (1017)
+..+.. |.||++.+ ..++++.|++.++
T Consensus 184 n~~~~~-g~tpL~~A~~~g~~~iv~~Ll~~g~ 214 (434)
T PHA02874 184 NVKDNN-GESPLHNAAEYGDYACIKLLIDHGN 214 (434)
T ss_pred CCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 555555 66655554 3466777777765
No 22
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.68 E-value=5e-16 Score=181.01 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCC-ccCCCCCchhhHHHhc
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPN-FRDARGRTALHWASYF 688 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn-~~D~~G~TPLH~Aa~~ 688 (1017)
...++||.++..+..+ +++.|++.|++++..+..|.||||+|+..|+.++|+.|++.|++++ ..+..|+||||+|+..
T Consensus 34 ~g~tpL~~A~~~~~~~-~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 112 (413)
T PHA02875 34 DGISPIKLAMKFRDSE-AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATIL 112 (413)
T ss_pred CCCCHHHHHHHcCCHH-HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHh
Confidence 3566778777766544 5677888888888887888888888888888888888888887664 4566788999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----h
Q 001759 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----A 764 (1017)
Q Consensus 689 G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~ 764 (1017)
|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++.+ .
T Consensus 113 ~~~~iv~~Ll~~gad~~~~~------~~g~tpLh~A~~~~~~~~v~~Ll~~g-----~~~~~~d~~-g~TpL~~A~~~g~ 180 (413)
T PHA02875 113 KKLDIMKLLIARGADPDIPN------TDKFSPLHLAVMMGDIKGIELLIDHK-----ACLDIEDCC-GCTPLIIAMAKGD 180 (413)
T ss_pred CCHHHHHHHHhCCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHhcC-----CCCCCCCCC-CCCHHHHHHHcCC
Confidence 99999999999998888776 68889999999999999999999888 566777777 88877665 4
Q ss_pred HHHHHHHHHcCC
Q 001759 765 EKANETAAQIGV 776 (1017)
Q Consensus 765 ~~~v~~L~e~~a 776 (1017)
.+.++.|++.|+
T Consensus 181 ~eiv~~Ll~~ga 192 (413)
T PHA02875 181 IAICKMLLDSGA 192 (413)
T ss_pred HHHHHHHHhCCC
Confidence 677888888887
No 23
>PHA03095 ankyrin-like protein; Provisional
Probab=99.68 E-value=4.2e-16 Score=184.21 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=127.6
Q ss_pred chHHHHHHHHHHhh--HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC-ChhhHHHHHhCCCCCCccCCCCCchhhHH
Q 001759 609 NSRDKLIQNLLRNR--LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG-YEWAMRPIIATGVSPNFRDARGRTALHWA 685 (1017)
Q Consensus 609 ~~~~~ll~~al~~~--l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G-~~~iV~~LL~~Gadvn~~D~~G~TPLH~A 685 (1017)
....++||.++..+ ....+++.|++.|+++|.+|..|.||||+|+..| +.+++++|+++|+++|.+|..|+||||+|
T Consensus 45 ~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a 124 (471)
T PHA03095 45 EYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY 124 (471)
T ss_pred CCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 34567888888765 3455778888999999999999999999999999 58999999999999999999999999999
Q ss_pred H--hcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC--cHHHHHHHHHccCCCCCcCCccccCccchhHHH
Q 001759 686 S--YFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG--HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 761 (1017)
Q Consensus 686 a--~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G--~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ 761 (1017)
+ ..++.+++++|+++|++++..+ ..|.||||+|+..+ +.+++++|++.| ++++..+.. |.||++
T Consensus 125 ~~~~~~~~~iv~~Ll~~gad~~~~d------~~g~tpL~~a~~~~~~~~~iv~~Ll~~g-----~~~~~~d~~-g~t~Lh 192 (471)
T PHA03095 125 LSGFNINPKVIRLLLRKGADVNALD------LYGMTPLAVLLKSRNANVELLRLLIDAG-----ADVYAVDDR-FRSLLH 192 (471)
T ss_pred hhCCcCCHHHHHHHHHcCCCCCccC------CCCCCHHHHHHHcCCCCHHHHHHHHHcC-----CCCcccCCC-CCCHHH
Confidence 8 5678899999999999988877 68899999888765 578899999998 455555666 888887
Q ss_pred HHh------HHHHHHHHHcCC
Q 001759 762 LAA------EKANETAAQIGV 776 (1017)
Q Consensus 762 ia~------~~~v~~L~e~~a 776 (1017)
.+. ...++.|++.++
T Consensus 193 ~~~~~~~~~~~i~~~Ll~~g~ 213 (471)
T PHA03095 193 HHLQSFKPRARIVRELIRAGC 213 (471)
T ss_pred HHHHHCCCcHHHHHHHHHcCC
Confidence 764 356778888887
No 24
>PHA03095 ankyrin-like protein; Provisional
Probab=99.67 E-value=6.8e-16 Score=182.49 Aligned_cols=155 Identities=17% Similarity=0.047 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHH--HcCChhhHHHHHhCCCCCCccCCCCCchhhHHHh
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAA--ALGYEWAMRPIIATGVSPNFRDARGRTALHWASY 687 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa--~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~ 687 (1017)
...++||.++..+....+++.|++.|+++|..|..|.||||+|+ ..++.+++++|++.|++++.+|..|.||||+|+.
T Consensus 82 ~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~ 161 (471)
T PHA03095 82 CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLK 161 (471)
T ss_pred CCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 45677888877765455677788888888888888888888888 4457788888888888888888888888888877
Q ss_pred cC--CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhc--CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH
Q 001759 688 FG--REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR--GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 763 (1017)
Q Consensus 688 ~G--~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~--G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia 763 (1017)
.+ +.+++++|+++|++++..+ ..|.||||+|+.. ++.+++++|++.| ++++..+.. |.||++.+
T Consensus 162 ~~~~~~~iv~~Ll~~g~~~~~~d------~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-----~~~~~~d~~-g~tpLh~A 229 (471)
T PHA03095 162 SRNANVELLRLLIDAGADVYAVD------DRFRSLLHHHLQSFKPRARIVRELIRAG-----CDPAATDML-GNTPLHSM 229 (471)
T ss_pred cCCCCHHHHHHHHHcCCCCcccC------CCCCCHHHHHHHHCCCcHHHHHHHHHcC-----CCCcccCCC-CCCHHHHH
Confidence 65 5788888888888887765 6888888887764 6778888888888 566677777 88888877
Q ss_pred hH------HHHHHHHHcCC
Q 001759 764 AE------KANETAAQIGV 776 (1017)
Q Consensus 764 ~~------~~v~~L~e~~a 776 (1017)
.. ..+..+++.++
T Consensus 230 a~~~~~~~~~v~~ll~~g~ 248 (471)
T PHA03095 230 ATGSSCKRSLVLPLLIAGI 248 (471)
T ss_pred HhcCCchHHHHHHHHHcCC
Confidence 54 35566677775
No 25
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.67 E-value=1.2e-16 Score=178.68 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=120.8
Q ss_pred HHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCC
Q 001759 624 CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA 703 (1017)
Q Consensus 624 ~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAd 703 (1017)
+-.+++.|+++|+++|.......|||--||.-|+.++|++|+++|+|++..|..|.|.||+||++||.+|+++|++.|||
T Consensus 96 Hl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD 175 (615)
T KOG0508|consen 96 HLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD 175 (615)
T ss_pred cHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC
Confidence 34467889999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHHHHHHcC
Q 001759 704 PGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIG 775 (1017)
Q Consensus 704 vn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v~~L~e~~ 775 (1017)
+|.++ ..|.|+||.|+..||.+|+++|+..| +.+.... . |.||+-.+...++..++++.
T Consensus 176 vn~ks------~kGNTALH~caEsG~vdivq~Ll~~g-----a~i~~d~-~-GmtPL~~Aa~tG~~~iVe~L 234 (615)
T KOG0508|consen 176 VNAKS------YKGNTALHDCAESGSVDIVQLLLKHG-----AKIDVDG-H-GMTPLLLAAVTGHTDIVERL 234 (615)
T ss_pred cchhc------ccCchHHHhhhhcccHHHHHHHHhCC-----ceeeecC-C-CCchHHHHhhhcchHHHHHH
Confidence 99988 79999999999999999999999999 5554443 4 88877666554444444433
No 26
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.67 E-value=4.9e-16 Score=190.28 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhCC-CCCCcc-CCCCCcHHHHHHHc--CChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCC--HHHHHH
Q 001759 623 LCEWLVWKIHEGG-KGPNVI-DDGGQGVVHLAAAL--GYEWAMRPIIATGVSPNFRDARGRTALHWASYFGR--EETVIM 696 (1017)
Q Consensus 623 l~e~Lv~~Lle~G-ad~n~~-D~~G~TpLH~Aa~~--G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~--~eiV~~ 696 (1017)
....+++.|++.| +++|.+ |..|.||||+|+.. ++.+++++|++.|+++|.+|..|+||||+|+..|+ .++|++
T Consensus 153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl 232 (764)
T PHA02716 153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK 232 (764)
T ss_pred CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence 3456778889999 999998 89999999998754 57899999999999999999999999999999995 589999
Q ss_pred HHHcCCCCCCCCCCCCCCCCCCCHHHHH-------------------------------------HhcCcHHHHHHHHHc
Q 001759 697 LVKLGAAPGAVEDPTPAFPGGQTAADLA-------------------------------------SSRGHKGIAGYLAEA 739 (1017)
Q Consensus 697 LL~~GAdvn~~dd~~~~d~~G~TPLhlA-------------------------------------a~~G~~~iv~~LLe~ 739 (1017)
|+++||+++.++ ..|.||||+| +..|+.+++++|++.
T Consensus 233 LLe~GADVN~kD------~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~ 306 (764)
T PHA02716 233 IIELGGDMDMKC------VNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP 306 (764)
T ss_pred HHHcCCCCCCCC------CCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence 999999999987 6999999975 345778899999999
Q ss_pred cCCCCCcCCccccCccchhHHHHH------hHHHHHHHHHcCC
Q 001759 740 DLSSHLSSLTVNENGMDNVAAALA------AEKANETAAQIGV 776 (1017)
Q Consensus 740 Ga~~~~a~l~l~d~~~G~Ta~~ia------~~~~v~~L~e~~a 776 (1017)
| ++++.++.. |.||++.+ ..++++.|++.++
T Consensus 307 G-----AdIN~kD~~-G~TPLH~Aaa~~~~~~eIVklLLe~GA 343 (764)
T PHA02716 307 G-----VKLHYKDSA-GRTCLHQYILRHNISTDIIKLLHEYGN 343 (764)
T ss_pred C-----CceeccCCC-CCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence 9 678888888 99999864 3478999999998
No 27
>PHA02798 ankyrin-like protein; Provisional
Probab=99.66 E-value=6.6e-16 Score=184.31 Aligned_cols=144 Identities=15% Similarity=0.097 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHc-----CChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC---CHHH
Q 001759 622 RLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAAL-----GYEWAMRPIIATGVSPNFRDARGRTALHWASYFG---REET 693 (1017)
Q Consensus 622 ~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~-----G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G---~~ei 693 (1017)
.....+++.|+++|+++|.+|..|.||||+|+.. ++.+++++|+++|+|+|.+|..|+||||+|+..| +.++
T Consensus 48 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i 127 (489)
T PHA02798 48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEI 127 (489)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH
Confidence 3345678889999999999999999999998864 6789999999999999999999999999999875 7899
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCc---HHHHHHHHHccCCCCCcCCccccCccchhHHHHH-------
Q 001759 694 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH---KGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA------- 763 (1017)
Q Consensus 694 V~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~---~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia------- 763 (1017)
+++|+++||+++..+ ..|.||||+|+..|+ .+++++|+++| ++++..+...|.||++..
T Consensus 128 v~~Ll~~Gadvn~~d------~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g-----adin~~~~~~~~t~Lh~~~~~~~~~ 196 (489)
T PHA02798 128 LLFMIENGADTTLLD------KDGFTMLQVYLQSNHHIDIEIIKLLLEKG-----VDINTHNNKEKYDTLHCYFKYNIDR 196 (489)
T ss_pred HHHHHHcCCCccccC------CCCCcHHHHHHHcCCcchHHHHHHHHHhC-----CCcccccCcCCCcHHHHHHHhcccc
Confidence 999999999999988 799999999999998 99999999999 556665433277776543
Q ss_pred -hHHHHHHHHHcCC
Q 001759 764 -AEKANETAAQIGV 776 (1017)
Q Consensus 764 -~~~~v~~L~e~~a 776 (1017)
..++++.|++.|+
T Consensus 197 ~~~~ivk~Li~~Ga 210 (489)
T PHA02798 197 IDADILKLFVDNGF 210 (489)
T ss_pred CCHHHHHHHHHCCC
Confidence 4678999999998
No 28
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.66 E-value=8.9e-16 Score=183.42 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=120.9
Q ss_pred HHHHHHHHHhh-----HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHc---CChhhHHHHHhCCCCC-CccCCCCCchh
Q 001759 612 DKLIQNLLRNR-----LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAAL---GYEWAMRPIIATGVSP-NFRDARGRTAL 682 (1017)
Q Consensus 612 ~~ll~~al~~~-----l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~---G~~~iV~~LL~~Gadv-n~~D~~G~TPL 682 (1017)
.++|+.++... -...+++.|+++|+++|.+|..|.||||.|+.. |+.+++++|+++|+|+ +.+|..|+|||
T Consensus 70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpL 149 (494)
T PHA02989 70 ETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLL 149 (494)
T ss_pred CCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHH
Confidence 45566555432 134567888889999999999999999887655 5788999999999999 78888899999
Q ss_pred hHHHhc--CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC----cHHHHHHHHHccCCCCCc----------
Q 001759 683 HWASYF--GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG----HKGIAGYLAEADLSSHLS---------- 746 (1017)
Q Consensus 683 H~Aa~~--G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G----~~~iv~~LLe~Ga~~~~a---------- 746 (1017)
|+|+.. ++.++|++|+++|++++...+ ..|.||||+|+..+ +.+++++|+++|++.+..
T Consensus 150 h~a~~~~~~~~~iv~~Ll~~Gadi~~~~~-----~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~ 224 (494)
T PHA02989 150 HMYLESFSVKKDVIKILLSFGVNLFEKTS-----LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLES 224 (494)
T ss_pred HHHHHhccCCHHHHHHHHHcCCCcccccc-----ccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHH
Confidence 988653 688899999999998877422 68889999887654 788999999988765532
Q ss_pred -----------------------CCccccCccchhHHHHH----hHHHHHHHHHcCC
Q 001759 747 -----------------------SLTVNENGMDNVAAALA----AEKANETAAQIGV 776 (1017)
Q Consensus 747 -----------------------~l~l~d~~~G~Ta~~ia----~~~~v~~L~e~~a 776 (1017)
+++.++.. |.||++.+ ..++++.|++.|+
T Consensus 225 ~~~~~~~~~~~~~~il~~l~~~advn~~d~~-G~TpL~~Aa~~~~~~~v~~LL~~Ga 280 (494)
T PHA02989 225 FLDNNKILSKKEFKVLNFILKYIKINKKDKK-GFNPLLISAKVDNYEAFNYLLKLGD 280 (494)
T ss_pred HHHhchhhcccchHHHHHHHhCCCCCCCCCC-CCCHHHHHHHhcCHHHHHHHHHcCC
Confidence 34566666 88877666 4577888888887
No 29
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.66 E-value=1e-15 Score=181.47 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=55.2
Q ss_pred HHHHHhCCCCCCccCCCCCcHHHHHH--HcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC--CHHHHHHHHHcCCC
Q 001759 628 VWKIHEGGKGPNVIDDGGQGVVHLAA--ALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG--REETVIMLVKLGAA 703 (1017)
Q Consensus 628 v~~Lle~Gad~n~~D~~G~TpLH~Aa--~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G--~~eiV~~LL~~GAd 703 (1017)
++.|++.|++++..|..|.||||+|+ ..|+.+++++|++.|++++..|..|.||||+|+..| +.+++++|+++|++
T Consensus 89 v~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d 168 (480)
T PHA03100 89 VKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD 168 (480)
T ss_pred HHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC
Confidence 34444555555555555555555555 555555555555555555555555555555555555 55555555555555
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcc
Q 001759 704 PGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 704 vn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~G 740 (1017)
++..+ ..|.||||+|+..|+.+++++|++.|
T Consensus 169 in~~d------~~g~tpL~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 169 INAKN------RYGYTPLHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred ccccc------CCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 54444 34555555555555555555555555
No 30
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.66 E-value=6.7e-16 Score=184.49 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhh--HHHHHHHHHHhCCCCC-CccCCCCCcHHHHHHHc--CChhhHHHHHhCCCCCCc-cCCCCCchhhH
Q 001759 611 RDKLIQNLLRNR--LCEWLVWKIHEGGKGP-NVIDDGGQGVVHLAAAL--GYEWAMRPIIATGVSPNF-RDARGRTALHW 684 (1017)
Q Consensus 611 ~~~ll~~al~~~--l~e~Lv~~Lle~Gad~-n~~D~~G~TpLH~Aa~~--G~~~iV~~LL~~Gadvn~-~D~~G~TPLH~ 684 (1017)
..++|+.++... ....+++.|+++|+++ +..|..|.||||+|+.. ++.++|++|+++|++++. .+..|.||||+
T Consensus 108 g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~ 187 (494)
T PHA02989 108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI 187 (494)
T ss_pred CCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHH
Confidence 346676665432 1346788899999999 89999999999998764 688999999999999998 68889999999
Q ss_pred HHhc----CCHHHHHHHHHcCCCCCCCCC--------------------------------CCCCCCCCCCHHHHHHhcC
Q 001759 685 ASYF----GREETVIMLVKLGAAPGAVED--------------------------------PTPAFPGGQTAADLASSRG 728 (1017)
Q Consensus 685 Aa~~----G~~eiV~~LL~~GAdvn~~dd--------------------------------~~~~d~~G~TPLhlAa~~G 728 (1017)
|+.. ++.+++++|+++|++++..+. .+.+|..|.||||+|+..|
T Consensus 188 a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~ 267 (494)
T PHA02989 188 YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVD 267 (494)
T ss_pred HHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhc
Confidence 9775 489999999999999887652 3456788999999999999
Q ss_pred cHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh----HHHHHHHHHcC
Q 001759 729 HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA----EKANETAAQIG 775 (1017)
Q Consensus 729 ~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~----~~~v~~L~e~~ 775 (1017)
+.+++++|++.| ++++..+.. |.||++.+. ..+++.|++..
T Consensus 268 ~~~~v~~LL~~G-----adin~~d~~-G~TpL~~A~~~~~~~iv~~LL~~~ 312 (494)
T PHA02989 268 NYEAFNYLLKLG-----DDIYNVSKD-GDTVLTYAIKHGNIDMLNRILQLK 312 (494)
T ss_pred CHHHHHHHHHcC-----CCccccCCC-CCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999999 778888888 999888774 46667777665
No 31
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.65 E-value=2.2e-15 Score=186.84 Aligned_cols=154 Identities=23% Similarity=0.195 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC-ChhhHHHHHhCCCCCCccCCCCCchhhHHHhc-
Q 001759 611 RDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG-YEWAMRPIIATGVSPNFRDARGRTALHWASYF- 688 (1017)
Q Consensus 611 ~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G-~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~- 688 (1017)
..+.||.++..+....++..|++.|++++..|..|.||||+|+..| ..+++++|+..|++++..|..|+||||+|+..
T Consensus 273 g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~ 352 (682)
T PHA02876 273 KNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLD 352 (682)
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhC
Confidence 4567777777665566777788888888888888888888888888 47788888888888888888888888888775
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh----
Q 001759 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA---- 764 (1017)
Q Consensus 689 G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~---- 764 (1017)
++.+++.+|++.|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.||++.+.
T Consensus 353 ~~~~iv~lLl~~gadin~~d------~~G~TpLh~Aa~~~~~~iv~~Ll~~g-----ad~~~~~~~-g~T~Lh~A~~~~~ 420 (682)
T PHA02876 353 RNKDIVITLLELGANVNARD------YCDKTPIHYAAVRNNVVIINTLLDYG-----ADIEALSQK-IGTALHFALCGTN 420 (682)
T ss_pred CcHHHHHHHHHcCCCCccCC------CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCccccCCC-CCchHHHHHHcCC
Confidence 46778888888888887776 57888888888888888888888888 555556665 777777663
Q ss_pred -HHHHHHHHHcCC
Q 001759 765 -EKANETAAQIGV 776 (1017)
Q Consensus 765 -~~~v~~L~e~~a 776 (1017)
...++.|++.++
T Consensus 421 ~~~~vk~Ll~~ga 433 (682)
T PHA02876 421 PYMSVKTLIDRGA 433 (682)
T ss_pred HHHHHHHHHhCCC
Confidence 244667777776
No 32
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.65 E-value=1.3e-15 Score=151.51 Aligned_cols=141 Identities=21% Similarity=0.166 Sum_probs=113.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHH
Q 001759 614 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREET 693 (1017)
Q Consensus 614 ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ei 693 (1017)
++..+-+.. ...+-.+|-+..-.+|.+|.+|.||||.|+.+||.+||..|+..||+++++...||||||-||...+.+|
T Consensus 67 ~lwaae~nr-l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v 145 (228)
T KOG0512|consen 67 LLWAAEKNR-LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV 145 (228)
T ss_pred HHHHHhhcc-HHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence 333334444 3334444445555689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCc-HHHHHHHHHc-cCCCCCcCCccccCccchhHHHHHhHHH
Q 001759 694 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGH-KGIAGYLAEA-DLSSHLSSLTVNENGMDNVAAALAAEKA 767 (1017)
Q Consensus 694 V~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~-~~iv~~LLe~-Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~ 767 (1017)
+..||++|+++|+.+ ....||||+|+...+ ...+.+|+.. + -....+++. +.||..++....
T Consensus 146 a~~LLqhgaDVnA~t------~g~ltpLhlaa~~rn~r~t~~~Ll~dry-----i~pg~~nn~-eeta~~iARRT~ 209 (228)
T KOG0512|consen 146 AGRLLQHGADVNAQT------KGLLTPLHLAAGNRNSRDTLELLLHDRY-----IHPGLKNNL-EETAFDIARRTS 209 (228)
T ss_pred HHHHHhccCcccccc------cccchhhHHhhcccchHHHHHHHhhccc-----cChhhhcCc-cchHHHHHHHhh
Confidence 999999999999998 578999999998765 4556666542 3 344456666 888998887653
No 33
>PHA02741 hypothetical protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=157.15 Aligned_cols=126 Identities=23% Similarity=0.230 Sum_probs=78.2
Q ss_pred CccCCCCCcHHHHHHHcCChhhHHHHHh------CCCCCCccCCCCCchhhHHHhcCC----HHHHHHHHHcCCCCCCCC
Q 001759 639 NVIDDGGQGVVHLAAALGYEWAMRPIIA------TGVSPNFRDARGRTALHWASYFGR----EETVIMLVKLGAAPGAVE 708 (1017)
Q Consensus 639 n~~D~~G~TpLH~Aa~~G~~~iV~~LL~------~Gadvn~~D~~G~TPLH~Aa~~G~----~eiV~~LL~~GAdvn~~d 708 (1017)
+.+|..|.||||+||..|+.++++.|+. .|++++.+|..|+||||+|+..|+ .+++++|+.+|++++.++
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 3456667777777777777777766542 256666677777777777777666 366667777777666654
Q ss_pred CCCCCCCCCCCHHHHHHhcCcHHHHHHHHH-ccCCCCCcCCccccCccchhHHHHHhH----HHHHHHHHcC
Q 001759 709 DPTPAFPGGQTAADLASSRGHKGIAGYLAE-ADLSSHLSSLTVNENGMDNVAAALAAE----KANETAAQIG 775 (1017)
Q Consensus 709 d~~~~d~~G~TPLhlAa~~G~~~iv~~LLe-~Ga~~~~a~l~l~d~~~G~Ta~~ia~~----~~v~~L~e~~ 775 (1017)
. ..|.||||+|+..|+.+++++|+. .| .+++.++.. |.||++.+.. ++++.|.+..
T Consensus 95 ~-----~~g~TpLh~A~~~~~~~iv~~Ll~~~g-----~~~~~~n~~-g~tpL~~A~~~~~~~iv~~L~~~~ 155 (169)
T PHA02741 95 M-----LEGDTALHLAAHRRDHDLAEWLCCQPG-----IDLHFCNAD-NKSPFELAIDNEDVAMMQILREIV 155 (169)
T ss_pred c-----CCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCCcCCCC-CCCHHHHHHHCCCHHHHHHHHHHH
Confidence 1 256777777777777777777765 35 455555555 6666655432 4444444433
No 34
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.64 E-value=2.7e-16 Score=166.27 Aligned_cols=129 Identities=24% Similarity=0.226 Sum_probs=119.6
Q ss_pred CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 001759 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAF 714 (1017)
Q Consensus 635 Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d 714 (1017)
.-|.|.-|..|.+||||||..|+..+|+.||..|+.+|..+....||||+||.+||-++|..||+..+++|+++
T Consensus 24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavn------ 97 (448)
T KOG0195|consen 24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVN------ 97 (448)
T ss_pred ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhh------
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHHHHHHcC
Q 001759 715 PGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIG 775 (1017)
Q Consensus 715 ~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v~~L~e~~ 775 (1017)
..|.|||||||.-|+..|++-|+..| +.+++.+++ |.||++.+.....+.|.+..
T Consensus 98 ehgntplhyacfwgydqiaedli~~g-----a~v~icnk~-g~tpldkakp~l~~~l~e~a 152 (448)
T KOG0195|consen 98 EHGNTPLHYACFWGYDQIAEDLISCG-----AAVNICNKK-GMTPLDKAKPMLKNTLLEIA 152 (448)
T ss_pred ccCCCchhhhhhhcHHHHHHHHHhcc-----ceeeecccC-CCCchhhhchHHHHHHHHHH
Confidence 69999999999999999999999999 778888898 99999999877666666544
No 35
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.64 E-value=2.4e-15 Score=186.51 Aligned_cols=155 Identities=15% Similarity=0.083 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 689 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G 689 (1017)
...+.||.++..+-...++..|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 340 ~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~ 419 (682)
T PHA02876 340 LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGT 419 (682)
T ss_pred CCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcC
Confidence 34567777776554556777888999999999999999999999999999999999999999999999999999998766
Q ss_pred C-HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC-cHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH--
Q 001759 690 R-EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG-HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE-- 765 (1017)
Q Consensus 690 ~-~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G-~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~-- 765 (1017)
+ ..++++|+++|++++.++ ..|.||||+|+..| +.+++++|++.| ++++..+.. |.||+..+..
T Consensus 420 ~~~~~vk~Ll~~gadin~~d------~~G~TpLh~Aa~~~~~~~iv~lLl~~G-----ad~n~~d~~-g~tpl~~a~~~~ 487 (682)
T PHA02876 420 NPYMSVKTLIDRGANVNSKN------KDLSTPLHYACKKNCKLDVIEMLLDNG-----ADVNAINIQ-NQYPLLIALEYH 487 (682)
T ss_pred CHHHHHHHHHhCCCCCCcCC------CCCChHHHHHHHhCCcHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHhC
Confidence 5 567899999999998887 69999999999876 689999999999 777888887 9998876543
Q ss_pred HHHHHHHHcCC
Q 001759 766 KANETAAQIGV 776 (1017)
Q Consensus 766 ~~v~~L~e~~a 776 (1017)
..++.|+..++
T Consensus 488 ~~v~~Ll~~~a 498 (682)
T PHA02876 488 GIVNILLHYGA 498 (682)
T ss_pred CHHHHHHHCCC
Confidence 56777777776
No 36
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=156.38 Aligned_cols=132 Identities=22% Similarity=0.226 Sum_probs=116.3
Q ss_pred CCCCCCccCCCCCcHHHHHHHcCCh----hhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHH---HHHHHHcCCCCCC
Q 001759 634 GGKGPNVIDDGGQGVVHLAAALGYE----WAMRPIIATGVSPNFRDARGRTALHWASYFGREET---VIMLVKLGAAPGA 706 (1017)
Q Consensus 634 ~Gad~n~~D~~G~TpLH~Aa~~G~~----~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ei---V~~LL~~GAdvn~ 706 (1017)
+|++++..+.++.++||.||..|+. +++++|+..|++++.+|..|+||||+||..|+.++ +++|+.+|++++.
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~ 88 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA 88 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence 5678888999999999999999998 66778889999999999999999999999998654 8999999999998
Q ss_pred CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH-ccCCCCCcCCccccCccchhHHHHHh----HHHHHHHHHcCC
Q 001759 707 VEDPTPAFPGGQTAADLASSRGHKGIAGYLAE-ADLSSHLSSLTVNENGMDNVAAALAA----EKANETAAQIGV 776 (1017)
Q Consensus 707 ~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe-~Ga~~~~a~l~l~d~~~G~Ta~~ia~----~~~v~~L~e~~a 776 (1017)
++. ..|.||||+|+..|+.+++++|++ .| ++++..+.. |.||++++. .++++.|++.++
T Consensus 89 ~d~-----~~g~TpLh~A~~~g~~~iv~~Ll~~~g-----ad~~~~d~~-g~tpL~~A~~~~~~~iv~~Ll~~ga 152 (166)
T PHA02743 89 REL-----GTGNTLLHIAASTKNYELAEWLCRQLG-----VNLGAINYQ-HETAYHIAYKMRDRRMMEILRANGA 152 (166)
T ss_pred CCC-----CCCCcHHHHHHHhCCHHHHHHHHhccC-----CCccCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 762 379999999999999999999995 78 677778887 999887765 578899999987
No 37
>PHA02946 ankyin-like protein; Provisional
Probab=99.64 E-value=1.7e-15 Score=178.59 Aligned_cols=153 Identities=11% Similarity=0.066 Sum_probs=125.4
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCC--hhhHHHHHhCCCCCCc-cCCCCCchhhHH
Q 001759 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGY--EWAMRPIIATGVSPNF-RDARGRTALHWA 685 (1017)
Q Consensus 609 ~~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~--~~iV~~LL~~Gadvn~-~D~~G~TPLH~A 685 (1017)
....++||.++..+.. .+++.|+++|+++|.+|..|+||||+|+..+. .+++++|+.+|+++|. .|..|.|||| |
T Consensus 70 ~~G~TpLh~Aa~~g~~-eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-a 147 (446)
T PHA02946 70 DDGNYPLHIASKINNN-RIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-A 147 (446)
T ss_pred CCCCCHHHHHHHcCCH-HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-H
Confidence 3456789988887744 46788999999999999999999999988764 7889999999999995 6888999997 6
Q ss_pred HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC--cHHHHHHHHHccCCCCCcCCccccCccchhHHHHH
Q 001759 686 SYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG--HKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 763 (1017)
Q Consensus 686 a~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G--~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia 763 (1017)
|..|+.+++++|++.|++++..+ ..|+||||+|+..+ +.+++++|++.| ++++.++.. |.||++++
T Consensus 148 a~~~~~~vv~~Ll~~gad~~~~d------~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-----adin~~d~~-G~TpLH~A 215 (446)
T PHA02946 148 CTDPSERVFKKIMSIGFEARIVD------KFGKNHIHRHLMSDNPKASTISWMMKLG-----ISPSKPDHD-GNTPLHIV 215 (446)
T ss_pred HHCCChHHHHHHHhccccccccC------CCCCCHHHHHHHhcCCCHHHHHHHHHcC-----CCCcccCCC-CCCHHHHH
Confidence 67789999999999999998887 68999999887754 468899999999 677788877 99998887
Q ss_pred hH------HHHHHHHHcCC
Q 001759 764 AE------KANETAAQIGV 776 (1017)
Q Consensus 764 ~~------~~v~~L~e~~a 776 (1017)
.. +.++.|+. ++
T Consensus 216 a~~~~~~~~iv~lLl~-ga 233 (446)
T PHA02946 216 CSKTVKNVDIINLLLP-ST 233 (446)
T ss_pred HHcCCCcHHHHHHHHc-CC
Confidence 54 35555553 44
No 38
>PHA02795 ankyrin-like protein; Provisional
Probab=99.63 E-value=3.8e-15 Score=172.17 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHhh-HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCcc------CCCCCch
Q 001759 609 NSRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFR------DARGRTA 681 (1017)
Q Consensus 609 ~~~~~ll~~al~~~-l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~------D~~G~TP 681 (1017)
+...++||.++..+ ....+++.|+++|++++.. ++.||||+|+..|+.+++++|+.+|++.+.. +..|.||
T Consensus 114 ~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~ 191 (437)
T PHA02795 114 NSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR 191 (437)
T ss_pred ccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccch
Confidence 44678888888722 3456788999999999985 4589999999999999999999999854322 2348899
Q ss_pred hhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHH
Q 001759 682 LHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 761 (1017)
Q Consensus 682 LH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ 761 (1017)
+|.|+..++.+++++|+++||++|..+ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++
T Consensus 192 l~~a~~~~~~eIve~LIs~GADIN~kD------~~G~TpLh~Aa~~g~~eiVelLL~~G-----AdIN~~d~~-G~TpLh 259 (437)
T PHA02795 192 GFLVDEPTVLEIYKLCIPYIEDINQLD------AGGRTLLYRAIYAGYIDLVSWLLENG-----ANVNAVMSN-GYTCLD 259 (437)
T ss_pred hHHHHhcCHHHHHHHHHhCcCCcCcCC------CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCC-CCCHHH
Confidence 999999999999999999999999988 79999999999999999999999999 788888888 999998
Q ss_pred HHhH------------HHHHHHHHcCC
Q 001759 762 LAAE------------KANETAAQIGV 776 (1017)
Q Consensus 762 ia~~------------~~v~~L~e~~a 776 (1017)
.+.. ++++.|++.++
T Consensus 260 ~Aa~~g~~~~~~~~~~eIvelLL~~ga 286 (437)
T PHA02795 260 VAVDRGSVIARRETHLKILEILLREPL 286 (437)
T ss_pred HHHHcCCcccccccHHHHHHHHHhCCC
Confidence 8753 67888888776
No 39
>PHA02741 hypothetical protein; Provisional
Probab=99.62 E-value=2.6e-15 Score=154.21 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH------hCCCCCCccCCCCCcHHHHHHHcCC----hhhHHHHHhCCCCCCccCC-CC
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIH------EGGKGPNVIDDGGQGVVHLAAALGY----EWAMRPIIATGVSPNFRDA-RG 678 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Ll------e~Gad~n~~D~~G~TpLH~Aa~~G~----~~iV~~LL~~Gadvn~~D~-~G 678 (1017)
...+.||.++..+..+.+ +.|+ ..|++++.+|..|+||||+|+..|+ .+++++|+..|+++|.++. .|
T Consensus 20 ~g~t~Lh~Aa~~g~~~~v-~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g 98 (169)
T PHA02741 20 EGENFFHEAARCGCFDII-ARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG 98 (169)
T ss_pred CCCCHHHHHHHcCCHHHH-HHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence 345678888877655433 3332 3468899999999999999999998 5889999999999999985 89
Q ss_pred CchhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCC
Q 001759 679 RTALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLS 742 (1017)
Q Consensus 679 ~TPLH~Aa~~G~~eiV~~LL~-~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~ 742 (1017)
+||||+|+..++.+++++|+. .|++++..+ ..|.||||+|+..|+.+++++|++.++.
T Consensus 99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n------~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 99 DTALHLAAHRRDHDLAEWLCCQPGIDLHFCN------ADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC------CCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 599998877 7999999999999999999999998744
No 40
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.60 E-value=5.3e-15 Score=164.67 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=108.1
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccC----CCCCcHHHHHHHcCChhhHHHHHhCCCCCCcc-CCCCCchh
Q 001759 608 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVID----DGGQGVVHLAAALGYEWAMRPIIATGVSPNFR-DARGRTAL 682 (1017)
Q Consensus 608 ~~~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D----~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~-D~~G~TPL 682 (1017)
......+++.+++.+. ..+++.|+++|+++|.++ ..|.||||+|+..|+.+++++|+++||++|.+ +..|.|||
T Consensus 30 ~~~~~~lL~~A~~~~~-~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL 108 (300)
T PHA02884 30 KICIANILYSSIKFHY-TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL 108 (300)
T ss_pred cCCCCHHHHHHHHcCC-HHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence 3455677888887664 446788999999999874 58999999999999999999999999999986 45799999
Q ss_pred hHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001759 683 HWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 683 H~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe 738 (1017)
|+|+..|+.+++++|+.+|++++..+ ..|.||||+|+..++..++.++..
T Consensus 109 h~Aa~~~~~eivklLL~~GAdin~kd------~~G~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 109 YISVLHGCLKCLEILLSYGADINIQT------NDMVTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHhCChhHHHHhcC
Confidence 99999999999999999999999987 689999999999999988866653
No 41
>PHA02730 ankyrin-like protein; Provisional
Probab=99.60 E-value=8.2e-15 Score=176.67 Aligned_cols=157 Identities=13% Similarity=0.043 Sum_probs=131.1
Q ss_pred CchHHHHHHHHHHhh--HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCC----hhhHHHHHhCCC--CCCccCCCCC
Q 001759 608 PNSRDKLIQNLLRNR--LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGY----EWAMRPIIATGV--SPNFRDARGR 679 (1017)
Q Consensus 608 ~~~~~~ll~~al~~~--l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~----~~iV~~LL~~Ga--dvn~~D~~G~ 679 (1017)
.+....+|+.-+..+ ....+++.|+++|+++|.. ..|.||||+|+..++ .+++++||.+|+ ++|.+|..|.
T Consensus 340 ~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~ 418 (672)
T PHA02730 340 ESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGR 418 (672)
T ss_pred hhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCC
Confidence 455666777666655 4567889999999999985 799999999998885 799999999998 6999999999
Q ss_pred chhhH---HHhcC---------CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcC
Q 001759 680 TALHW---ASYFG---------REETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSS 747 (1017)
Q Consensus 680 TPLH~---Aa~~G---------~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~ 747 (1017)
||||. |...+ ..+++++|+.+||+++.++ ..|.||||+|+..++.+++++|++.| ++
T Consensus 419 T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD------~~G~TPLh~Aa~~~~~eive~LI~~G-----Ad 487 (672)
T PHA02730 419 LCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMID------NENKTLLYYAVDVNNIQFARRLLEYG-----AS 487 (672)
T ss_pred chHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccC------CCCCCHHHHHHHhCCHHHHHHHHHCC-----CC
Confidence 99994 33332 2356999999999999988 69999999999999999999999999 67
Q ss_pred CccccCccchhHHHHHh------HHHHHHHHHcCC
Q 001759 748 LTVNENGMDNVAAALAA------EKANETAAQIGV 776 (1017)
Q Consensus 748 l~l~d~~~G~Ta~~ia~------~~~v~~L~e~~a 776 (1017)
++..+...|.||++.+. .+.++.|++.++
T Consensus 488 IN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga 522 (672)
T PHA02730 488 VNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP 522 (672)
T ss_pred CCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence 77777523889998874 458999998885
No 42
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.60 E-value=1.8e-15 Score=155.29 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=114.7
Q ss_pred CCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 001759 634 GGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPA 713 (1017)
Q Consensus 634 ~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~ 713 (1017)
....+|..|+.|.|||.||+.+|++++|++||..|++++...+...|+|++|+..|..++|++||.++.++|..|
T Consensus 149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyD----- 223 (296)
T KOG0502|consen 149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYD----- 223 (296)
T ss_pred hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceec-----
Confidence 445789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHH---HHHHHHHc
Q 001759 714 FPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEK---ANETAAQI 774 (1017)
Q Consensus 714 d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~---~v~~L~e~ 774 (1017)
.+|.|||-+|+..||.+|++.|++.| ++++..+.. |.++.+.+-.. .|+.+++.
T Consensus 224 -wNGgTpLlyAvrgnhvkcve~Ll~sG-----Ad~t~e~ds-Gy~~mdlAValGyr~Vqqvie~ 280 (296)
T KOG0502|consen 224 -WNGGTPLLYAVRGNHVKCVESLLNSG-----ADVTQEDDS-GYWIMDLAVALGYRIVQQVIEK 280 (296)
T ss_pred -cCCCceeeeeecCChHHHHHHHHhcC-----CCccccccc-CCcHHHHHHHhhhHHHHHHHHH
Confidence 59999999999999999999999999 788888777 88876665332 44444443
No 43
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.60 E-value=9.1e-16 Score=167.27 Aligned_cols=115 Identities=25% Similarity=0.335 Sum_probs=73.7
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCC-CCCCccCCCC--------------------------------------
Q 001759 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATG-VSPNFRDARG-------------------------------------- 678 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~G-advn~~D~~G-------------------------------------- 678 (1017)
+|..|.+|.|+||||+.+++.++|+.||+.| +++|.+++.|
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g 340 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG 340 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence 4557888888888888888888888888776 5666666555
Q ss_pred CchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchh
Q 001759 679 RTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNV 758 (1017)
Q Consensus 679 ~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~T 758 (1017)
.|+||+|+.+|+.++|+.||.+|||+|++|+ +|.|+|++|+.+||.+|+++||..- ..|..+.|.+ |.|
T Consensus 341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDd------DGSTALMCA~EHGhkEivklLLA~p----~cd~sLtD~D-gST 409 (452)
T KOG0514|consen 341 QTALMLAVSHGRVDMVKALLACGADVNIQDD------DGSTALMCAAEHGHKEIVKLLLAVP----SCDISLTDVD-GST 409 (452)
T ss_pred chhhhhhhhcCcHHHHHHHHHccCCCccccC------CccHHHhhhhhhChHHHHHHHhccC----cccceeecCC-Cch
Confidence 4555556666666666666666666666653 6666666666666666666665432 2455555555 556
Q ss_pred HHHHH
Q 001759 759 AAALA 763 (1017)
Q Consensus 759 a~~ia 763 (1017)
|+.++
T Consensus 410 Al~IA 414 (452)
T KOG0514|consen 410 ALSIA 414 (452)
T ss_pred hhhhH
Confidence 55444
No 44
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.59 E-value=2.5e-15 Score=151.58 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhC-----CCCCCccCCCCCcHHHHHHHcCChh---hHHHHHhCCCCCCccC-CCCCc
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIHEG-----GKGPNVIDDGGQGVVHLAAALGYEW---AMRPIIATGVSPNFRD-ARGRT 680 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Lle~-----Gad~n~~D~~G~TpLH~Aa~~G~~~---iV~~LL~~Gadvn~~D-~~G~T 680 (1017)
...++||.++..+-.+.++.. ... +..++.+|..|+||||+|+..|+.+ ++++|+..|+++|.+| ..|+|
T Consensus 16 ~g~tpLh~A~~~g~~~~l~~~-~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T 94 (154)
T PHA02736 16 EGENILHYLCRNGGVTDLLAF-KNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNT 94 (154)
T ss_pred CCCCHHHHHHHhCCHHHHHHH-HHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCc
Confidence 345778888877643222111 111 1123456889999999999999874 6889999999999998 48999
Q ss_pred hhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCC
Q 001759 681 ALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSS 743 (1017)
Q Consensus 681 PLH~Aa~~G~~eiV~~LL~-~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~ 743 (1017)
|||+|+..|+.+++++|+. .|++++..+ ..|.||||+|+..|+.+++++|+..|++.
T Consensus 95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~------~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~ 152 (154)
T PHA02736 95 PLHIAVYTQNYELATWLCNQPGVNMEILN------YAFKTPYYVACERHDAKMMNILRAKGAQC 152 (154)
T ss_pred HHHHHHHhCCHHHHHHHHhCCCCCCcccc------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999997 599998887 79999999999999999999999999554
No 45
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.58 E-value=5.3e-15 Score=184.39 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=129.7
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhc
Q 001759 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 609 ~~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~ 688 (1017)
+.....+|.+.... ..-..+.++++|++++.++..|.||||.||..|+..+|++||++|++++.+|+.|+||||.||..
T Consensus 505 ~~~l~~lhla~~~~-~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~ 583 (1143)
T KOG4177|consen 505 KKGLTPLHLAADED-TVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQ 583 (1143)
T ss_pred hhccchhhhhhhhh-hHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHc
Confidence 34455566655554 34456778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH
Q 001759 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 689 G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~ 765 (1017)
|+.+|+.+|+++||++|..+ .+|.|||++|+..|+.+++++|+..|.++...+...++.. |.+|.+....
T Consensus 584 G~~~i~~LLlk~GA~vna~d------~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~-g~~p~~v~e~ 653 (1143)
T KOG4177|consen 584 GHNDIAELLLKHGASVNAAD------LDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRK-GAVPEDVAEE 653 (1143)
T ss_pred ChHHHHHHHHHcCCCCCccc------ccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhc-ccChhhHHHH
Confidence 99999999999999999988 7999999999999999999999999977644446666666 8888777654
No 46
>PHA02917 ankyrin-like protein; Provisional
Probab=99.57 E-value=2.2e-14 Score=176.16 Aligned_cols=122 Identities=7% Similarity=-0.037 Sum_probs=96.0
Q ss_pred HHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHH--hcCCHHHHHHHHHcCCCCCCCCCCC--------CCCCCC
Q 001759 648 VVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWAS--YFGREETVIMLVKLGAAPGAVEDPT--------PAFPGG 717 (1017)
Q Consensus 648 pLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa--~~G~~eiV~~LL~~GAdvn~~dd~~--------~~d~~G 717 (1017)
++|+|+..|+.++|++|+++|+++|.+|..|+||||+|+ ..|+.++|++|+++||+++..+... .....+
T Consensus 106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~ 185 (661)
T PHA02917 106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNC 185 (661)
T ss_pred HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccc
Confidence 334444455678889999999999999999999999653 5789999999999999998754200 011234
Q ss_pred CCHHHHHHh-----------cCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH------HHHHHHHHcCC
Q 001759 718 QTAADLASS-----------RGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE------KANETAAQIGV 776 (1017)
Q Consensus 718 ~TPLhlAa~-----------~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~------~~v~~L~e~~a 776 (1017)
.||||+|+. .|+.+++++|++.| ++++.++.. |.||++.+.. ++++.|++ ++
T Consensus 186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-----advn~~d~~-G~TpLh~A~~~g~~~~eivk~Li~-g~ 254 (661)
T PHA02917 186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-----IKPSSIDKN-YCTALQYYIKSSHIDIDIVKLLMK-GI 254 (661)
T ss_pred ccHHHHHHhhcccccccccccCcHHHHHHHHHCC-----CCcccCCCC-CCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence 699999986 46899999999999 788888888 9999888753 68888875 54
No 47
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.57 E-value=1.7e-14 Score=160.67 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=102.2
Q ss_pred ccCCCCCcH-HHHHHHcCChhhHHHHHhCCCCCCccC----CCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 001759 640 VIDDGGQGV-VHLAAALGYEWAMRPIIATGVSPNFRD----ARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAF 714 (1017)
Q Consensus 640 ~~D~~G~Tp-LH~Aa~~G~~~iV~~LL~~Gadvn~~D----~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d 714 (1017)
.+|..|.|+ ||.|+..|+.+++++|+++|+++|.++ ..|.||||+|+..|+.+++++|+++||+++..++
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~----- 101 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE----- 101 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC-----
Confidence 467777775 566677789999999999999999984 5899999999999999999999999999998653
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH
Q 001759 715 PGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 715 ~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~ 765 (1017)
..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++.+..
T Consensus 102 ~~g~TpLh~Aa~~~~~eivklLL~~G-----Adin~kd~~-G~TpL~~A~~ 146 (300)
T PHA02884 102 EAKITPLYISVLHGCLKCLEILLSYG-----ADINIQTND-MVTPIELALM 146 (300)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHH
Confidence 57999999999999999999999999 788888888 9999988754
No 48
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.56 E-value=1.8e-14 Score=131.54 Aligned_cols=84 Identities=31% Similarity=0.410 Sum_probs=78.5
Q ss_pred HHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC
Q 001759 649 VHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG 728 (1017)
Q Consensus 649 LH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G 728 (1017)
||+||..|+.+++++|++.+.+++. |.||||+||..|+.+++++|++.|++++..+ ..|+||||+|+..|
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQD------KNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS------TTSSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccC------CCCCCHHHHHHHcC
Confidence 7999999999999999999999887 8999999999999999999999999999887 69999999999999
Q ss_pred cHHHHHHHHHccCC
Q 001759 729 HKGIAGYLAEADLS 742 (1017)
Q Consensus 729 ~~~iv~~LLe~Ga~ 742 (1017)
+.+++++|+++|++
T Consensus 71 ~~~~~~~Ll~~g~~ 84 (89)
T PF12796_consen 71 NLEIVKLLLEHGAD 84 (89)
T ss_dssp HHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999943
No 49
>PHA02917 ankyrin-like protein; Provisional
Probab=99.56 E-value=2.5e-14 Score=175.62 Aligned_cols=157 Identities=10% Similarity=-0.030 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHhhH--HHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCCh----hhHHHHHhCCCCCCccCCCCCchhh
Q 001759 610 SRDKLIQNLLRNRL--CEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYE----WAMRPIIATGVSPNFRDARGRTALH 683 (1017)
Q Consensus 610 ~~~~ll~~al~~~l--~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~----~iV~~LL~~Gadvn~~D~~G~TPLH 683 (1017)
...+.||.++.... ...+++.|++.|++++.+|..|+||||+|+..|+. ++++.|++.+..+|..|. .+++|
T Consensus 31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~ 108 (661)
T PHA02917 31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIFSY 108 (661)
T ss_pred CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chHHH
Confidence 34577887655422 24567778888999988888899999999988884 455777776544555442 36778
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH--HhcCcHHHHHHHHHccCCCCCcCCccccCc-------
Q 001759 684 WASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA--SSRGHKGIAGYLAEADLSSHLSSLTVNENG------- 754 (1017)
Q Consensus 684 ~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlA--a~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~------- 754 (1017)
+|+..|+.++|++|+++|++++..+ ..|.||||+| +..|+.+++++|+++|++.+..+ .++..
T Consensus 109 ~a~~~~~~e~vk~Ll~~Gadin~~d------~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d--~~~~~g~~~~~~ 180 (661)
T PHA02917 109 MKSKNVDVDLIKVLVEHGFDLSVKC------ENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED--EDDEYGYAYDDY 180 (661)
T ss_pred HHhhcCCHHHHHHHHHcCCCCCccC------CCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc--cccccccccccc
Confidence 8888899999999999999999987 6999999964 45789999999999995554321 11111
Q ss_pred ---cchhHHHHH---------------hHHHHHHHHHcCC
Q 001759 755 ---MDNVAAALA---------------AEKANETAAQIGV 776 (1017)
Q Consensus 755 ---~G~Ta~~ia---------------~~~~v~~L~e~~a 776 (1017)
.+.||++.+ +.++++.|++.|+
T Consensus 181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga 220 (661)
T PHA02917 181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI 220 (661)
T ss_pred cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC
Confidence 135888766 3589999999998
No 50
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.55 E-value=1.2e-14 Score=162.69 Aligned_cols=138 Identities=25% Similarity=0.243 Sum_probs=121.7
Q ss_pred HHHHHHh-CCCCCCc--------cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHH
Q 001759 627 LVWKIHE-GGKGPNV--------IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIML 697 (1017)
Q Consensus 627 Lv~~Lle-~Gad~n~--------~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~L 697 (1017)
+++.|++ .++++.. -...|-+||..|+..||.++|+.|+.+|++||......-|||--||.-|+.++|++|
T Consensus 57 vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyL 136 (615)
T KOG0508|consen 57 VVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYL 136 (615)
T ss_pred HHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHH
Confidence 3445555 5666543 234688999999999999999999999999999988889999999999999999999
Q ss_pred HHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHHHHHHHH
Q 001759 698 VKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQ 773 (1017)
Q Consensus 698 L~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~v~~L~e 773 (1017)
+++|+|+++.+ ..|.|.||+||.+||.+|+++|++.| ++++.++.. |.||++.+ +.++++.|+.
T Consensus 137 vE~gad~~Ian------rhGhTcLmIa~ykGh~~I~qyLle~g-----ADvn~ks~k-GNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 137 VEHGADPEIAN------RHGHTCLMIACYKGHVDIAQYLLEQG-----ADVNAKSYK-GNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred HHcCCCCcccc------cCCCeeEEeeeccCchHHHHHHHHhC-----CCcchhccc-CchHHHhhhhcccHHHHHHHHh
Confidence 99999999988 79999999999999999999999999 888888888 99987665 5788999999
Q ss_pred cCC
Q 001759 774 IGV 776 (1017)
Q Consensus 774 ~~a 776 (1017)
.++
T Consensus 205 ~ga 207 (615)
T KOG0508|consen 205 HGA 207 (615)
T ss_pred CCc
Confidence 887
No 51
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.55 E-value=1.5e-14 Score=145.90 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=101.8
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCCC--C-----CCccCCCCCchhhHHHhcCCHH---HHHHHHHcCCCCCCC
Q 001759 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGV--S-----PNFRDARGRTALHWASYFGREE---TVIMLVKLGAAPGAV 707 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Ga--d-----vn~~D~~G~TPLH~Aa~~G~~e---iV~~LL~~GAdvn~~ 707 (1017)
++..|..|.||||+||..|+ ++.+++..++ + ++.+|..|+||||+|+..|+.+ ++++|+++|++++..
T Consensus 10 ~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 10 ASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK 87 (154)
T ss_pred HHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence 45678899999999999998 3344433322 2 3456889999999999999874 688999999999987
Q ss_pred CCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc-cCCCCCcCCccccCccchhHHHHHh----HHHHHHHHHcCC
Q 001759 708 EDPTPAFPGGQTAADLASSRGHKGIAGYLAEA-DLSSHLSSLTVNENGMDNVAAALAA----EKANETAAQIGV 776 (1017)
Q Consensus 708 dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~-Ga~~~~a~l~l~d~~~G~Ta~~ia~----~~~v~~L~e~~a 776 (1017)
++ ..|.||||+|+..|+.+++++|+.. | .+++.++.. |.||++++. .++++.|++.++
T Consensus 88 ~~-----~~g~T~Lh~A~~~~~~~i~~~Ll~~~g-----~d~n~~~~~-g~tpL~~A~~~~~~~i~~~Ll~~ga 150 (154)
T PHA02736 88 ER-----VFGNTPLHIAVYTQNYELATWLCNQPG-----VNMEILNYA-FKTPYYVACERHDAKMMNILRAKGA 150 (154)
T ss_pred CC-----CCCCcHHHHHHHhCCHHHHHHHHhCCC-----CCCccccCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 62 4899999999999999999999974 7 677788887 999887775 467777877775
No 52
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.55 E-value=1e-14 Score=172.28 Aligned_cols=144 Identities=22% Similarity=0.189 Sum_probs=123.1
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHh-CC-CCCCccCCCCCchhhHH
Q 001759 608 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIA-TG-VSPNFRDARGRTALHWA 685 (1017)
Q Consensus 608 ~~~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~-~G-advn~~D~~G~TPLH~A 685 (1017)
++...++||.+++++..+ .+..|+..|++++.+++++.||||.||..|...+|+.||+ .| ...|..|-.|.||||+|
T Consensus 270 d~dg~tpLH~a~r~G~~~-svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla 348 (929)
T KOG0510|consen 270 DNDGCTPLHYAARQGGPE-SVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA 348 (929)
T ss_pred cccCCchHHHHHHcCChh-HHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence 455678999999998665 4577999999999999999999999999999999999998 44 55788999999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHH
Q 001759 686 SYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAA 761 (1017)
Q Consensus 686 a~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ 761 (1017)
+..||..++++||++||...... -.|.+|.||||+|+..|+..+|++|+.+| +++..+++. |.+|.+
T Consensus 349 a~~gH~~v~qlLl~~GA~~~~~~---e~D~dg~TaLH~Aa~~g~~~av~~Li~~G-----a~I~~~n~~-g~SA~~ 415 (929)
T KOG0510|consen 349 AKSGHDRVVQLLLNKGALFLNMS---EADSDGNTALHLAAKYGNTSAVQKLISHG-----ADIGVKNKK-GKSAFD 415 (929)
T ss_pred hhcCHHHHHHHHHhcChhhhccc---ccccCCchhhhHHHHhccHHHHHHHHHcC-----Cceeecccc-cccccc
Confidence 99999999999999999887311 12489999999999999999999999999 566566655 655554
No 53
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.54 E-value=2.6e-14 Score=168.88 Aligned_cols=131 Identities=24% Similarity=0.256 Sum_probs=110.3
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCCCC
Q 001759 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVK-LGAAPGAVEDPTPAFPG 716 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~-~GAdvn~~dd~~~~d~~ 716 (1017)
+|..|.+|.||||+||..|+.+++..|+..|++++.++.++.||||.||.+|+.++|+-||+ .|... .+..|-.
T Consensus 266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rl-----lne~D~~ 340 (929)
T KOG0510|consen 266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRL-----LNESDLH 340 (929)
T ss_pred hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccc-----ccccccc
Confidence 45578999999999999999999999999999999999999999999999999999999998 44322 1234489
Q ss_pred CCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHHHHHHHHcCC
Q 001759 717 GQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQIGV 776 (1017)
Q Consensus 717 G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~v~~L~e~~a 776 (1017)
|.||||+|+..||..++++|+..|+..+. ..-.|.+ |.||++.+ ...+++.|+..||
T Consensus 341 g~tpLHlaa~~gH~~v~qlLl~~GA~~~~--~~e~D~d-g~TaLH~Aa~~g~~~av~~Li~~Ga 401 (929)
T KOG0510|consen 341 GMTPLHLAAKSGHDRVVQLLLNKGALFLN--MSEADSD-GNTALHLAAKYGNTSAVQKLISHGA 401 (929)
T ss_pred CCCchhhhhhcCHHHHHHHHHhcChhhhc--ccccccC-CchhhhHHHHhccHHHHHHHHHcCC
Confidence 99999999999999999999999965442 1123666 88876665 5678899998887
No 54
>PHA02795 ankyrin-like protein; Provisional
Probab=99.54 E-value=5.8e-14 Score=162.40 Aligned_cols=148 Identities=7% Similarity=-0.156 Sum_probs=125.6
Q ss_pred hhHHHHHHHHHHhCCCCCC------ccCCCCCcHHHHHHH--cCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHH
Q 001759 621 NRLCEWLVWKIHEGGKGPN------VIDDGGQGVVHLAAA--LGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 692 (1017)
Q Consensus 621 ~~l~e~Lv~~Lle~Gad~n------~~D~~G~TpLH~Aa~--~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~e 692 (1017)
...+..+++.|+.+|+++| .++..++|+||+|+. .|+.++|++|+++||+++.. .+.||||+|+..|+.+
T Consensus 86 ~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~e 163 (437)
T PHA02795 86 YITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESS 163 (437)
T ss_pred hcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHH
Confidence 3445678889999999999 788999999999999 89999999999999999985 4589999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHHH
Q 001759 693 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKAN 768 (1017)
Q Consensus 693 iV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~v 768 (1017)
++++|+++|++.....+....+..|.||+|.|+..|+.+++++|+++| ++++.++.. |.||+..+ +.+.+
T Consensus 164 IVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-----ADIN~kD~~-G~TpLh~Aa~~g~~eiV 237 (437)
T PHA02795 164 VVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-----EDINQLDAG-GRTLLYRAIYAGYIDLV 237 (437)
T ss_pred HHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-----CCcCcCCCC-CCCHHHHHHHcCCHHHH
Confidence 999999999854322210111245889999999999999999999999 788888888 99987765 47889
Q ss_pred HHHHHcCC
Q 001759 769 ETAAQIGV 776 (1017)
Q Consensus 769 ~~L~e~~a 776 (1017)
+.|++.|+
T Consensus 238 elLL~~GA 245 (437)
T PHA02795 238 SWLLENGA 245 (437)
T ss_pred HHHHHCCC
Confidence 99999998
No 55
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=99.54 E-value=2.3e-14 Score=126.07 Aligned_cols=80 Identities=28% Similarity=0.445 Sum_probs=70.5
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCC-CCCceeeEEEecCCCccc
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-HAAGRVPFYITGSNRLAC 518 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-h~pG~Vp~~Vt~~n~~~c 518 (1017)
.|+.|+|+||+++|||+|+|+|.+| ..++.|+||+..+-.+.|++.+|+|.+|| |.||.|+|.++.....-|
T Consensus 2 ~I~ai~P~eG~~tGGt~VtI~GenF-------~~gl~V~FG~~~~w~e~isp~~i~~~tPP~~~pG~V~Vtl~~~~~~~~ 74 (85)
T cd01175 2 CIKAISPSEGWTTGGATVIIIGDNF-------FDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFC 74 (85)
T ss_pred cccEecCCCCcccCCeEEEEECCCC-------CCCcEEEECCEeEEEEEeccceEEEecCCCCCCceEEEEEEECceeec
Confidence 5999999999999999999999998 44799999999999999999999999999 999999999998776666
Q ss_pred Cc-ceeeee
Q 001759 519 SE-VREFEY 526 (1017)
Q Consensus 519 SE-v~~FEy 526 (1017)
.. .-.|-|
T Consensus 75 ~~~p~~f~y 83 (85)
T cd01175 75 KGTPGRFVY 83 (85)
T ss_pred cCCCceEEe
Confidence 42 344555
No 56
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.52 E-value=4.6e-14 Score=161.37 Aligned_cols=155 Identities=25% Similarity=0.256 Sum_probs=132.6
Q ss_pred HHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHH
Q 001759 615 IQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 694 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV 694 (1017)
+..++..++.+.+ ..|+..|+++|..+.+|.|+||-||.-.+.+||++|+++|++||..|..||||||-|+.+||..++
T Consensus 44 ~l~A~~~~d~~ev-~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~ 122 (527)
T KOG0505|consen 44 FLEACSRGDLEEV-RKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV 122 (527)
T ss_pred HHhccccccHHHH-HHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence 3344555544443 457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCC-----------------------------------------------------CCCCCCCCCHH
Q 001759 695 IMLVKLGAAPGAVEDP-----------------------------------------------------TPAFPGGQTAA 721 (1017)
Q Consensus 695 ~~LL~~GAdvn~~dd~-----------------------------------------------------~~~d~~G~TPL 721 (1017)
.+|+.+||++.+++.- ...+..|.|+|
T Consensus 123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~l 202 (527)
T KOG0505|consen 123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATAL 202 (527)
T ss_pred HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHH
Confidence 9999999987665411 14556699999
Q ss_pred HHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchh----HHHHHhHHHHHHHHHcCC
Q 001759 722 DLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNV----AAALAAEKANETAAQIGV 776 (1017)
Q Consensus 722 hlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~T----a~~ia~~~~v~~L~e~~a 776 (1017)
|+|+.+|+.++.++|+++| .+++++|.+ |.| ++++++..+.+.|++.++
T Consensus 203 HvAaa~Gy~e~~~lLl~ag-----~~~~~~D~d-gWtPlHAAA~Wg~~~~~elL~~~ga 255 (527)
T KOG0505|consen 203 HVAAANGYTEVAALLLQAG-----YSVNIKDYD-GWTPLHAAAHWGQEDACELLVEHGA 255 (527)
T ss_pred HHHHhhhHHHHHHHHHHhc-----cCccccccc-CCCcccHHHHhhhHhHHHHHHHhhc
Confidence 9999999999999999999 788888888 888 467777888888888887
No 57
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.51 E-value=2.7e-14 Score=163.22 Aligned_cols=145 Identities=23% Similarity=0.253 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCC-------------------
Q 001759 611 RDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSP------------------- 671 (1017)
Q Consensus 611 ~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadv------------------- 671 (1017)
..+.+|.+|... ...++..|++.|++||..|..|+||||.|+..||..++++||.+|+++
T Consensus 73 glTalhq~~id~-~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~ 151 (527)
T KOG0505|consen 73 GLTALHQACIDD-NLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEAT 151 (527)
T ss_pred cchhHHHHHhcc-cHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcch
Confidence 446677777766 456788999999999999999999999999999999999999886542
Q ss_pred ----------------------------------------CccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 001759 672 ----------------------------------------NFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 711 (1017)
Q Consensus 672 ----------------------------------------n~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~ 711 (1017)
+.++..|-|+||.|+..|..++.++|+.+|.++++.|
T Consensus 152 ~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D--- 228 (527)
T KOG0505|consen 152 LDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKD--- 228 (527)
T ss_pred hHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccc---
Confidence 2333458999999999999999999999999999988
Q ss_pred CCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHH
Q 001759 712 PAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKAN 768 (1017)
Q Consensus 712 ~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v 768 (1017)
.+|+||||.|+..|+.+++++|+++| ++++..... |.+|++++..+.+
T Consensus 229 ---~dgWtPlHAAA~Wg~~~~~elL~~~g-----a~~d~~t~~-g~~p~dv~dee~~ 276 (527)
T KOG0505|consen 229 ---YDGWTPLHAAAHWGQEDACELLVEHG-----ADMDAKTKM-GETPLDVADEEEL 276 (527)
T ss_pred ---ccCCCcccHHHHhhhHhHHHHHHHhh-----cccchhhhc-CCCCccchhhhhH
Confidence 79999999999999999999999999 888888888 9999999877666
No 58
>PHA02730 ankyrin-like protein; Provisional
Probab=99.49 E-value=2e-13 Score=164.76 Aligned_cols=143 Identities=13% Similarity=-0.018 Sum_probs=114.1
Q ss_pred HHHHHHHhCCCCCC-ccCCCCCcHHHHHHHcC---ChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC--CHHHHHHHHH
Q 001759 626 WLVWKIHEGGKGPN-VIDDGGQGVVHLAAALG---YEWAMRPIIATGVSPNFRDARGRTALHWASYFG--REETVIMLVK 699 (1017)
Q Consensus 626 ~Lv~~Lle~Gad~n-~~D~~G~TpLH~Aa~~G---~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G--~~eiV~~LL~ 699 (1017)
..+++.++..+++| .+|..|+||||+|+..| +.++|++||++||+++.+|..|+||||+|+..| +.++|++|++
T Consensus 21 ~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~ 100 (672)
T PHA02730 21 KKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS 100 (672)
T ss_pred HHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh
Confidence 34555666667888 88999999999999997 589999999999999999999999999999976 7999999999
Q ss_pred cCCCC--CCCCCCCCCCCCCCCHHHHHHh--cCcHHHHHHHHH-ccCCCCCcCCccccC-ccchhHHHHH----hHHHHH
Q 001759 700 LGAAP--GAVEDPTPAFPGGQTAADLASS--RGHKGIAGYLAE-ADLSSHLSSLTVNEN-GMDNVAAALA----AEKANE 769 (1017)
Q Consensus 700 ~GAdv--n~~dd~~~~d~~G~TPLhlAa~--~G~~~iv~~LLe-~Ga~~~~a~l~l~d~-~~G~Ta~~ia----~~~~v~ 769 (1017)
+|+++ +..+ ..+.+||+.++. +++.+++++|+. .|+++.. ..+.+++ . |.++..++ ..++++
T Consensus 101 ~~~~~~~~~~~------~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~-~~~~~~~~~-~~~~~yl~~~~~~~eIvk 172 (672)
T PHA02730 101 SYSNASNELTS------NINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSK-NTNYYIHCL-GLVDIYVTTPNPRPEVLL 172 (672)
T ss_pred cCCCCCccccc------ccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhh-hhhhhcccc-chhhhhHhcCCCchHHHH
Confidence 97765 5444 578999998888 999999999997 5533331 1112212 3 66655444 679999
Q ss_pred HHHHcCC
Q 001759 770 TAAQIGV 776 (1017)
Q Consensus 770 ~L~e~~a 776 (1017)
.|++.|+
T Consensus 173 lLi~~g~ 179 (672)
T PHA02730 173 WLLKSEC 179 (672)
T ss_pred HHHHcCC
Confidence 9999998
No 59
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.47 E-value=2e-13 Score=170.48 Aligned_cols=151 Identities=23% Similarity=0.251 Sum_probs=128.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHH
Q 001759 613 KLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 692 (1017)
Q Consensus 613 ~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~e 692 (1017)
+.|+.+...+. ..++..+++.++..+...+.|.|+||+|+..++..+++.++++|++++.++..|.||||.||.+|+.+
T Consensus 476 T~Lhlaaq~Gh-~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~ 554 (1143)
T KOG4177|consen 476 TPLHLAAQEGH-TEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVD 554 (1143)
T ss_pred cchhhhhccCC-chHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCch
Confidence 44555555543 34456678888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH----hHHHH
Q 001759 693 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKAN 768 (1017)
Q Consensus 693 iV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~v 768 (1017)
+|++||++||++++.+ ..|+||||.|+..|+.+|+.+|+++| +++|..+.. |.||+.++ ....+
T Consensus 555 ~VkfLLe~gAdv~ak~------~~G~TPLH~Aa~~G~~~i~~LLlk~G-----A~vna~d~~-g~TpL~iA~~lg~~~~~ 622 (1143)
T KOG4177|consen 555 LVKFLLEHGADVNAKD------KLGYTPLHQAAQQGHNDIAELLLKHG-----ASVNAADLD-GFTPLHIAVRLGYLSVV 622 (1143)
T ss_pred HHHHhhhCCccccccC------CCCCChhhHHHHcChHHHHHHHHHcC-----CCCCccccc-CcchhHHHHHhcccchh
Confidence 9999999999999988 79999999999999999999999999 566666666 66765554 55677
Q ss_pred HHHHHcCC
Q 001759 769 ETAAQIGV 776 (1017)
Q Consensus 769 ~~L~e~~a 776 (1017)
+.+...++
T Consensus 623 k~l~~~~~ 630 (1143)
T KOG4177|consen 623 KLLKVVTA 630 (1143)
T ss_pred hHHHhccC
Confidence 77777776
No 60
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.45 E-value=7.7e-13 Score=167.36 Aligned_cols=126 Identities=23% Similarity=0.188 Sum_probs=108.2
Q ss_pred cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCH
Q 001759 641 IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTA 720 (1017)
Q Consensus 641 ~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TP 720 (1017)
.+..+.++||.||..|+.++++.|++.|+++|..|..|+||||+||..|+.+++++|+++|++++..| ..|.||
T Consensus 521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d------~~G~Tp 594 (823)
T PLN03192 521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD------ANGNTA 594 (823)
T ss_pred CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcC------CCCCCH
Confidence 34467899999999999999999999999999999999999999999999999999999999999887 799999
Q ss_pred HHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHHHHHHcCC
Q 001759 721 ADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAAQIGV 776 (1017)
Q Consensus 721 LhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v~~L~e~~a 776 (1017)
||+|+..||.+++++|++.++..+ ....... ...|+..++.+.++.|++.++
T Consensus 595 L~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~-L~~Aa~~g~~~~v~~Ll~~Ga 646 (823)
T PLN03192 595 LWNAISAKHHKIFRILYHFASISD---PHAAGDL-LCTAAKRNDLTAMKELLKQGL 646 (823)
T ss_pred HHHHHHhCCHHHHHHHHhcCcccC---cccCchH-HHHHHHhCCHHHHHHHHHCCC
Confidence 999999999999999998874321 1111111 334667777899999999998
No 61
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.43 E-value=6.8e-13 Score=121.04 Aligned_cols=89 Identities=28% Similarity=0.342 Sum_probs=76.5
Q ss_pred HHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHH
Q 001759 615 IQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 694 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV 694 (1017)
|+.++..+..+ +++.|++.+.+++. |.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++
T Consensus 1 L~~A~~~~~~~-~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 75 (89)
T PF12796_consen 1 LHIAAQNGNLE-ILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV 75 (89)
T ss_dssp HHHHHHTTTHH-HHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred CHHHHHcCCHH-HHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence 45566666544 45667788888886 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCC
Q 001759 695 IMLVKLGAAPGAVE 708 (1017)
Q Consensus 695 ~~LL~~GAdvn~~d 708 (1017)
++|+++|++++.+|
T Consensus 76 ~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 76 KLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHTTT-TTSS-
T ss_pred HHHHHcCCCCCCcC
Confidence 99999999998764
No 62
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.40 E-value=5.3e-13 Score=141.61 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhc
Q 001759 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 609 ~~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~ 688 (1017)
+..-.+||-+++++ +..+++.|+..|+.+|..+....||||+||.+||.++|+.||...+|+|+.+..|.|||||||..
T Consensus 32 dhgfsplhwaakeg-h~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfw 110 (448)
T KOG0195|consen 32 DHGFSPLHWAAKEG-HVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFW 110 (448)
T ss_pred ccCcchhhhhhhcc-cHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhh
Confidence 33446788889888 55678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCC
Q 001759 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLS 742 (1017)
Q Consensus 689 G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~ 742 (1017)
|...+++-|+..||.+++.+ +.|.|||+.|.-.-..-+.++--+.|-.
T Consensus 111 gydqiaedli~~ga~v~icn------k~g~tpldkakp~l~~~l~e~aek~gq~ 158 (448)
T KOG0195|consen 111 GYDQIAEDLISCGAAVNICN------KKGMTPLDKAKPMLKNTLLEIAEKHGQS 158 (448)
T ss_pred cHHHHHHHHHhccceeeecc------cCCCCchhhhchHHHHHHHHHHHHhCCC
Confidence 99999999999999999987 7999999988654333344444445633
No 63
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.39 E-value=2e-13 Score=140.50 Aligned_cols=108 Identities=23% Similarity=0.237 Sum_probs=102.6
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCC
Q 001759 626 WLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPG 705 (1017)
Q Consensus 626 ~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn 705 (1017)
-+++.|++.|++|+...+...|+|.+|+..|+.++|++||.++.|+|..|-+|-|||-+|++.||.+||+.||..||+++
T Consensus 174 ~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t 253 (296)
T KOG0502|consen 174 PVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT 253 (296)
T ss_pred HHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcc
Q 001759 706 AVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 706 ~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~G 740 (1017)
..+ ..|++++++|+..|+. +|+..+++-
T Consensus 254 ~e~------dsGy~~mdlAValGyr-~Vqqvie~h 281 (296)
T KOG0502|consen 254 QED------DSGYWIMDLAVALGYR-IVQQVIEKH 281 (296)
T ss_pred ccc------ccCCcHHHHHHHhhhH-HHHHHHHHH
Confidence 888 4999999999999998 888888876
No 64
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.39 E-value=8.6e-13 Score=131.60 Aligned_cols=106 Identities=25% Similarity=0.226 Sum_probs=96.8
Q ss_pred cHHHHHHHcCChhhHHHHHhCCCC-CCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001759 647 GVVHLAAALGYEWAMRPIIATGVS-PNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 647 TpLH~Aa~~G~~~iV~~LL~~Gad-vn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa 725 (1017)
..+.+|+..+....|+.||+..++ +|.+|.+|+||||-|+++||.+||..|+..||++++++ ..|+||||-||
T Consensus 65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T------~~GWTPLhSAc 138 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKT------NEGWTPLHSAC 138 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccccc------ccCccchhhhh
Confidence 456789999999999999987765 79999999999999999999999999999999999999 69999999999
Q ss_pred hcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh
Q 001759 726 SRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 726 ~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~ 764 (1017)
..++.+|+.+||.+| +++++..+. ..||++++.
T Consensus 139 kWnN~~va~~LLqhg-----aDVnA~t~g-~ltpLhlaa 171 (228)
T KOG0512|consen 139 KWNNFEVAGRLLQHG-----ADVNAQTKG-LLTPLHLAA 171 (228)
T ss_pred cccchhHHHHHHhcc-----Ccccccccc-cchhhHHhh
Confidence 999999999999999 777887776 778888874
No 65
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.38 E-value=9.9e-13 Score=143.88 Aligned_cols=106 Identities=28% Similarity=0.356 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc-CCC
Q 001759 626 WLVWKIHEGGKGPNVIDD-GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL-GAA 703 (1017)
Q Consensus 626 ~Lv~~Lle~Gad~n~~D~-~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~-GAd 703 (1017)
.++..|...| |+|.+-. .|+|+|++|+.+|..++|+.||.+|||||.+|.+|-|+||.||.+||.+||++||.. ++|
T Consensus 321 ~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd 399 (452)
T KOG0514|consen 321 TVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD 399 (452)
T ss_pred HHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc
Confidence 3444455444 7888755 699999999999999999999999999999999999999999999999999999965 677
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001759 704 PGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 704 vn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe 738 (1017)
+.+.| .+|.|+|.+|...||.+|.-+|-.
T Consensus 400 ~sLtD------~DgSTAl~IAleagh~eIa~mlYa 428 (452)
T KOG0514|consen 400 ISLTD------VDGSTALSIALEAGHREIAVMLYA 428 (452)
T ss_pred ceeec------CCCchhhhhHHhcCchHHHHHHHH
Confidence 77766 799999999999999999988864
No 66
>PHA02792 ankyrin-like protein; Provisional
Probab=99.38 E-value=5.2e-12 Score=151.27 Aligned_cols=153 Identities=7% Similarity=-0.039 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHhh-HHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCC--CchhhHHH
Q 001759 610 SRDKLIQNLLRNR-LCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARG--RTALHWAS 686 (1017)
Q Consensus 610 ~~~~ll~~al~~~-l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G--~TPLH~Aa 686 (1017)
....+|+.-+... ..-.+++.|++.|++++ + ..+..++|.||..|+.++|++|+++||++|.+|..| .||||+|+
T Consensus 305 ~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-r-~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~ 382 (631)
T PHA02792 305 SIQDLLSEYVSYHTVYINVIKCMIDEGATLY-R-FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTL 382 (631)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHCCCccc-c-CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHH
Confidence 3444455444443 23457888999999875 2 235677999999999999999999999999999875 69999988
Q ss_pred hcCCHH---HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHH
Q 001759 687 YFGREE---TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA 763 (1017)
Q Consensus 687 ~~G~~e---iV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia 763 (1017)
..+..+ ++++|+++||++|.++ ..|.||||+|+..|+.+++++|+++| ++++.++.. |.||++.+
T Consensus 383 ~n~~~~v~~IlklLIs~GADIN~kD------~~G~TPLh~Aa~~~n~eivelLLs~G-----ADIN~kD~~-G~TpL~~A 450 (631)
T PHA02792 383 SIHESDVLSILKLCKPYIDDINKID------KHGRSILYYCIESHSVSLVEWLIDNG-----ADINITTKY-GSTCIGIC 450 (631)
T ss_pred HhccHhHHHHHHHHHhcCCcccccc------ccCcchHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCC-CCCHHHHH
Confidence 766554 5888999999999887 79999999999999999999999999 788888888 99998887
Q ss_pred hH--------------HHHHHHHHcCC
Q 001759 764 AE--------------KANETAAQIGV 776 (1017)
Q Consensus 764 ~~--------------~~v~~L~e~~a 776 (1017)
.. +.++.|+.++.
T Consensus 451 ~~~~~~~~~~i~~~~~~il~lLLs~~p 477 (631)
T PHA02792 451 VILAHACIPEIAELYIKILEIILSKLP 477 (631)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence 53 44666666663
No 67
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.37 E-value=6.8e-12 Score=118.57 Aligned_cols=114 Identities=28% Similarity=0.402 Sum_probs=93.0
Q ss_pred ccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 001759 640 VIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQT 719 (1017)
Q Consensus 640 ~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~T 719 (1017)
.+|..|.||||+|+..|+.++++.|+..|.+++..+..|.||||+|+..++.+++++|+..|++++..+ ..|.|
T Consensus 2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~~ 75 (126)
T cd00204 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD------KDGNT 75 (126)
T ss_pred CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccC------CCCCC
Confidence 356778899999998888888899988888888888888899999998888888999988888776655 57889
Q ss_pred HHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhH
Q 001759 720 AADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 720 PLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~ 765 (1017)
|+|+|+..++.+++++|+..| .+.+..+.. +.++.+.+..
T Consensus 76 ~l~~a~~~~~~~~~~~L~~~~-----~~~~~~~~~-~~~~l~~~~~ 115 (126)
T cd00204 76 PLHLAARNGNLDVVKLLLKHG-----ADVNARDKD-GRTPLHLAAK 115 (126)
T ss_pred HHHHHHHcCcHHHHHHHHHcC-----CCCcccCCC-CCCHHHHHHh
Confidence 999999888889999998887 555566665 7777776643
No 68
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.36 E-value=1.1e-12 Score=154.43 Aligned_cols=96 Identities=22% Similarity=0.135 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001759 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ 691 (1017)
-+.+|.++.++ ..-++++|++..+-++.+|..|.+|||+||+.|+.+++++|+.++..+|..+..|.||||.||..||.
T Consensus 50 fTalhha~Lng-~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~ 128 (854)
T KOG0507|consen 50 FTLLHHAVLNG-QNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHL 128 (854)
T ss_pred hhHHHHHHhcC-chHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcch
Confidence 35566666655 33466777788777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCCCCCCC
Q 001759 692 ETVIMLVKLGAAPGAVE 708 (1017)
Q Consensus 692 eiV~~LL~~GAdvn~~d 708 (1017)
+++.+||.+|+++-+++
T Consensus 129 dvv~~Ll~~~adp~i~n 145 (854)
T KOG0507|consen 129 EVVFYLLKKNADPFIRN 145 (854)
T ss_pred HHHHHHHhcCCCccccC
Confidence 88888888888877766
No 69
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.36 E-value=5.1e-12 Score=158.47 Aligned_cols=147 Identities=19% Similarity=0.110 Sum_probs=105.9
Q ss_pred chHHHHHH-HHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcC---ChhhHHHHHhCCCC------CC----cc
Q 001759 609 NSRDKLIQ-NLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALG---YEWAMRPIIATGVS------PN----FR 674 (1017)
Q Consensus 609 ~~~~~ll~-~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G---~~~iV~~LL~~Gad------vn----~~ 674 (1017)
....+.|| .++..+ ...++++|++.|+ .+..|.||||.|+..+ ...++..++..+.+ ++ ..
T Consensus 50 ~~G~t~Lh~~A~~~~-~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~ 124 (743)
T TIGR00870 50 RLGRSALFVAAIENE-NLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE 124 (743)
T ss_pred ccchhHHHHHHHhcC-hHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccc
Confidence 34456677 444444 5556677777776 5667888888887622 22333344433321 11 12
Q ss_pred CCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCC--------CCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCc
Q 001759 675 DARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT--------PAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLS 746 (1017)
Q Consensus 675 D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~--------~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a 746 (1017)
+..|.||||+||..|+.++|++|+++||+++..+.-. .....|.||||+|+..|+.+++++|++.| +
T Consensus 125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-----a 199 (743)
T TIGR00870 125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP-----A 199 (743)
T ss_pred cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-----c
Confidence 3469999999999999999999999999999764210 11246999999999999999999999999 6
Q ss_pred CCccccCccchhHHHHHhHH
Q 001759 747 SLTVNENGMDNVAAALAAEK 766 (1017)
Q Consensus 747 ~l~l~d~~~G~Ta~~ia~~~ 766 (1017)
+++..+.. |.|+++++...
T Consensus 200 din~~d~~-g~T~Lh~A~~~ 218 (743)
T TIGR00870 200 DILTADSL-GNTLLHLLVME 218 (743)
T ss_pred chhhHhhh-hhHHHHHHHhh
Confidence 78888888 99999887665
No 70
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.36 E-value=2.6e-12 Score=116.16 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=91.0
Q ss_pred HHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhc
Q 001759 648 VVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR 727 (1017)
Q Consensus 648 pLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~ 727 (1017)
-+.|+..+|..+-|+..+..|.|||..- .|+||||+||-+|..+++++|+..||+++..| +.|-|||--|+..
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kD------KygITPLLsAvwE 77 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKD------KYGITPLLSAVWE 77 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCcc------ccCCcHHHHHHHH
Confidence 3568888888888888888888887654 78899999999999999999999999888877 7889999999999
Q ss_pred CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHHHHH
Q 001759 728 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANETAA 772 (1017)
Q Consensus 728 G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v~~L~ 772 (1017)
||.+||++|+..| ++.+++..+ |.+.++....+.++.|+
T Consensus 78 GH~~cVklLL~~G-----Adrt~~~Pd-G~~~~eate~edIr~LL 116 (117)
T KOG4214|consen 78 GHRDCVKLLLQNG-----ADRTIHAPD-GTALIEATEEEDIRELL 116 (117)
T ss_pred hhHHHHHHHHHcC-----cccceeCCC-chhHHhhccHHHHHHHh
Confidence 9999999999888 666666666 77777777666666554
No 71
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.34 E-value=2.9e-12 Score=160.68 Aligned_cols=160 Identities=16% Similarity=0.055 Sum_probs=123.2
Q ss_pred CchHHHHHHHHHH--hhHHHHHHHHHHhCCCC------CCc----cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccC
Q 001759 608 PNSRDKLIQNLLR--NRLCEWLVWKIHEGGKG------PNV----IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRD 675 (1017)
Q Consensus 608 ~~~~~~ll~~al~--~~l~e~Lv~~Lle~Gad------~n~----~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D 675 (1017)
....+++||.+++ ....+.++..+...+.+ ++. .+..|.||||+||..|+.++|++||++|++++.++
T Consensus 79 ~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~ 158 (743)
T TIGR00870 79 GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARA 158 (743)
T ss_pred CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence 4567889999887 45566677766665532 111 23469999999999999999999999999999763
Q ss_pred --------------CCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcC---------cHHH
Q 001759 676 --------------ARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRG---------HKGI 732 (1017)
Q Consensus 676 --------------~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G---------~~~i 732 (1017)
..|.||||+|+..|+.+++++|+++|++++..| ..|+||||+|+..+ ...+
T Consensus 159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d------~~g~T~Lh~A~~~~~~~~~~~~l~~~~ 232 (743)
T TIGR00870 159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD------SLGNTLLHLLVMENEFKAEYEELSCQM 232 (743)
T ss_pred CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh------hhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence 259999999999999999999999999998887 69999999999987 3456
Q ss_pred HHHHHHccCCCCCc--CCccccCccchhHHHHH----hHHHHHHHHHc
Q 001759 733 AGYLAEADLSSHLS--SLTVNENGMDNVAAALA----AEKANETAAQI 774 (1017)
Q Consensus 733 v~~LLe~Ga~~~~a--~l~l~d~~~G~Ta~~ia----~~~~v~~L~e~ 774 (1017)
.+++++.+...... ..++.|+. |.||++++ +.+.++.+++.
T Consensus 233 ~~~l~~ll~~~~~~~el~~i~N~~-g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 233 YNFALSLLDKLRDSKELEVILNHQ-GLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred HHHHHHHHhccCChHhhhhhcCCC-CCCchhhhhhcCCccHHHHHHHH
Confidence 77777776332211 11566777 88877665 45677777774
No 72
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=128.81 Aligned_cols=106 Identities=30% Similarity=0.438 Sum_probs=99.5
Q ss_pred HHHHhCCCCCCccCCCCCcHHHHHHHcCC-----hhhHHHHHhCCC---CCCccCCCCCchhhHHHhcCCHHHHHHHHHc
Q 001759 629 WKIHEGGKGPNVIDDGGQGVVHLAAALGY-----EWAMRPIIATGV---SPNFRDARGRTALHWASYFGREETVIMLVKL 700 (1017)
Q Consensus 629 ~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~-----~~iV~~LL~~Ga---dvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~ 700 (1017)
..++..|++++.+|..|.||||+|+..|+ .++++.||+.|+ +.+.+|..|+||||+|+..|+.+++.+|++.
T Consensus 90 ~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 169 (235)
T COG0666 90 KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169 (235)
T ss_pred HHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc
Confidence 66888999999999999999999999999 999999999999 6666799999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcc
Q 001759 701 GAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 701 GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~G 740 (1017)
|++++..+ ..|.||+++|+..|+..++..|+..+
T Consensus 170 ~~~~~~~~------~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 170 GADPNSRN------SYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCCCcccc------cCCCcchhhhcccchHHHHHHHHhcC
Confidence 99998886 69999999999999999999999976
No 73
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.30 E-value=3.4e-12 Score=150.38 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=112.4
Q ss_pred CCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 001759 637 GPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPG 716 (1017)
Q Consensus 637 d~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~ 716 (1017)
.+|..|.+|.|+||.||.+|+..++++|+++.+-++..|..|.+|||+||+.|+.++|++|+.++..+|+.+ ..
T Consensus 41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~------~e 114 (854)
T KOG0507|consen 41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVN------IE 114 (854)
T ss_pred cccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccc------cc
Confidence 467788999999999999999999999999999999999999999999999999999999999998888877 69
Q ss_pred CCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHH----HHHhHHHHHHHHHc
Q 001759 717 GQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAA----ALAAEKANETAAQI 774 (1017)
Q Consensus 717 G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~----~ia~~~~v~~L~e~ 774 (1017)
|.||||+|+.+||.+++.+|+.+| ++.-+.++. +.|++ .++...+++.|+..
T Consensus 115 ~~tplhlaaqhgh~dvv~~Ll~~~-----adp~i~nns-~~t~ldlA~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 115 NETPLHLAAQHGHLEVVFYLLKKN-----ADPFIRNNS-KETVLDLASRFGRAEVVQMLLQK 170 (854)
T ss_pred CcCccchhhhhcchHHHHHHHhcC-----CCccccCcc-cccHHHHHHHhhhhHHHHHHhhh
Confidence 999999999999999999999999 666777776 77754 55566777777765
No 74
>PHA02792 ankyrin-like protein; Provisional
Probab=99.29 E-value=8.6e-12 Score=149.45 Aligned_cols=117 Identities=16% Similarity=-0.017 Sum_probs=98.6
Q ss_pred HHHHhhHHHHHHHHHHhCCCCCCccCCCC--CcHHHHHHHcCCh---hhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001759 617 NLLRNRLCEWLVWKIHEGGKGPNVIDDGG--QGVVHLAAALGYE---WAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 617 ~al~~~l~e~Lv~~Lle~Gad~n~~D~~G--~TpLH~Aa~~G~~---~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ 691 (1017)
.++..+. ..+++.|+++|+++|.+|..| .||||+|+..+.. .++++|+.+|+++|.+|..|+||||+|+..++.
T Consensus 345 ~Aa~~gn-~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~ 423 (631)
T PHA02792 345 QKFDNRD-PKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSV 423 (631)
T ss_pred HHHHcCC-HHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCH
Confidence 3444332 346788999999999999875 6999998776654 357889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHh----------cCcHHHHHHHHHcc
Q 001759 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASS----------RGHKGIAGYLAEAD 740 (1017)
Q Consensus 692 eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~----------~G~~~iv~~LLe~G 740 (1017)
+++++|+++|++++..+ ..|.||||+|+. ..+.+++++|+.+|
T Consensus 424 eivelLLs~GADIN~kD------~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~ 476 (631)
T PHA02792 424 SLVEWLIDNGADINITT------KYGSTCIGICVILAHACIPEIAELYIKILEIILSKL 476 (631)
T ss_pred HHHHHHHHCCCCCCCcC------CCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988 699999999976 23356788888888
No 75
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.29 E-value=4e-11 Score=113.31 Aligned_cols=119 Identities=29% Similarity=0.352 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCH
Q 001759 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGRE 691 (1017)
Q Consensus 612 ~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ 691 (1017)
.+.++.+++.+.. .+++.|++.|.+.+..+..|.||||+|+..+..+++++|+..|++++..+..|.||+|+|+..++.
T Consensus 8 ~t~l~~a~~~~~~-~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~ 86 (126)
T cd00204 8 RTPLHLAASNGHL-EVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNL 86 (126)
T ss_pred CCHHHHHHHcCcH-HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcH
Confidence 4677888877755 456778889999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHH
Q 001759 692 ETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLA 737 (1017)
Q Consensus 692 eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LL 737 (1017)
+++++|+..|.+++..+ ..|.||+++|...++.+++++|+
T Consensus 87 ~~~~~L~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 87 DVVKLLLKHGADVNARD------KDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHHHHcCCCCcccC------CCCCCHHHHHHhcCCHHHHHHhC
Confidence 99999999998877766 68999999999999999999874
No 76
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=131.63 Aligned_cols=97 Identities=25% Similarity=0.266 Sum_probs=90.8
Q ss_pred CCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCc-cCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 001759 636 KGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNF-RDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAF 714 (1017)
Q Consensus 636 ad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~-~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d 714 (1017)
-++|.+|..|+|+|..|+..|+.++|++||+.|+|||. ++..++||||+||..|+.++.++|++.|+.++.++
T Consensus 36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vN------ 109 (396)
T KOG1710|consen 36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVN------ 109 (396)
T ss_pred hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCcccccc------
Confidence 35899999999999999999999999999999999996 56679999999999999999999999999999998
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHH
Q 001759 715 PGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 715 ~~G~TPLhlAa~~G~~~iv~~LLe 738 (1017)
.-|+|+..+|+..||.+||..+-.
T Consensus 110 svgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 110 SVGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred chhhhHHHHHHHhcchHHHHHHhc
Confidence 799999999999999999987753
No 77
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.1e-11 Score=140.19 Aligned_cols=109 Identities=28% Similarity=0.238 Sum_probs=95.7
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCC
Q 001759 627 LVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGA 706 (1017)
Q Consensus 627 Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~ 706 (1017)
|++.++..-.|+...++.|.|+||-|+..||.+||++||+.|+|||+.|.+||||||+||.+++..+++.|++.|+.+-+
T Consensus 565 lVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfA 644 (752)
T KOG0515|consen 565 LVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFA 644 (752)
T ss_pred HHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEe
Confidence 34444445568888899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCHHHHHH--hcCcHHHHHHHHHcc
Q 001759 707 VEDPTPAFPGGQTAADLAS--SRGHKGIAGYLAEAD 740 (1017)
Q Consensus 707 ~dd~~~~d~~G~TPLhlAa--~~G~~~iv~~LLe~G 740 (1017)
.+- .++.||..-+- ..|+.+|.+||....
T Consensus 645 sTl-----SDmeTa~eKCee~eeGY~~CsqyL~~vq 675 (752)
T KOG0515|consen 645 STL-----SDMETAAEKCEEMEEGYDQCSQYLYGVQ 675 (752)
T ss_pred eec-----ccccchhhhcchhhhhHHHHHHHHHHHH
Confidence 764 68899988764 468999999998644
No 78
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.23 E-value=1.1e-10 Score=121.47 Aligned_cols=119 Identities=27% Similarity=0.302 Sum_probs=103.9
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCC-----HHHHHHHHHcCC--CC-CCCCC
Q 001759 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGR-----EETVIMLVKLGA--AP-GAVED 709 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~-----~eiV~~LL~~GA--dv-n~~dd 709 (1017)
....+..+.+++|.++..+...++.+|+..|++++.+|..|.||||+|+..|+ .+++++|++.|+ ++ +..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~- 144 (235)
T COG0666 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD- 144 (235)
T ss_pred cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC-
Confidence 34567778999999999999999999999999999999999999999999999 999999999999 33 3334
Q ss_pred CCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHH
Q 001759 710 PTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKAN 768 (1017)
Q Consensus 710 ~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v 768 (1017)
..|.||||+|+..|+.+++.+|++.| ++++..+.. |.|++..+.....
T Consensus 145 -----~~g~tpl~~A~~~~~~~~~~~ll~~~-----~~~~~~~~~-g~t~l~~a~~~~~ 192 (235)
T COG0666 145 -----EDGNTPLHWAALNGDADIVELLLEAG-----ADPNSRNSY-GVTALDPAAKNGR 192 (235)
T ss_pred -----CCCCchhHHHHHcCchHHHHHHHhcC-----CCCcccccC-CCcchhhhcccch
Confidence 79999999999999999999999999 666666776 8887777654433
No 79
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.21 E-value=1e-11 Score=104.36 Aligned_cols=50 Identities=34% Similarity=0.518 Sum_probs=19.5
Q ss_pred CCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHH
Q 001759 636 KGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWA 685 (1017)
Q Consensus 636 ad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~A 685 (1017)
+++|..|..|.||||+||..|+.++|++||..|++++.+|..|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 55555555555555555555555555555555555555555555555554
No 80
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.19 E-value=5e-11 Score=147.29 Aligned_cols=86 Identities=31% Similarity=0.475 Sum_probs=55.5
Q ss_pred HHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhc
Q 001759 648 VVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR 727 (1017)
Q Consensus 648 pLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~ 727 (1017)
.||.||..|+.++++.|+..|+++|.+|..|+||||+||..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d------~~G~TpLh~A~~~ 158 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD------KDGKTPLELAEEN 158 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHC
Confidence 3566666666666666666666666666666666666666666666666666666666555 4666666666666
Q ss_pred CcHHHHHHHHHc
Q 001759 728 GHKGIAGYLAEA 739 (1017)
Q Consensus 728 G~~~iv~~LLe~ 739 (1017)
|+.+++++|+++
T Consensus 159 g~~~iv~~Ll~~ 170 (664)
T PTZ00322 159 GFREVVQLLSRH 170 (664)
T ss_pred CcHHHHHHHHhC
Confidence 666666666665
No 81
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.19 E-value=1.5e-11 Score=103.32 Aligned_cols=55 Identities=38% Similarity=0.663 Sum_probs=33.3
Q ss_pred HHhCC-CCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001759 664 IIATG-VSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 724 (1017)
Q Consensus 664 LL~~G-advn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlA 724 (1017)
||++| +++|.+|..|.||||+||..|+.++|++|++.|++++.++ ..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d------~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKD------KDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---------TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCc------CCCCCHHHhC
Confidence 67888 9999999999999999999999999999999999999988 7999999997
No 82
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.19 E-value=4e-11 Score=108.52 Aligned_cols=86 Identities=27% Similarity=0.327 Sum_probs=76.6
Q ss_pred HhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 001759 632 HEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 711 (1017)
Q Consensus 632 le~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~ 711 (1017)
+..|.++|..- .|++|||+||-.|...++++|+.-|++++.+|+.|-|||.-|++.||.+||++||..||+-....
T Consensus 22 v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~--- 97 (117)
T KOG4214|consen 22 VNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHA--- 97 (117)
T ss_pred HHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeC---
Confidence 34467777544 89999999999999999999999999999999999999999999999999999999999987776
Q ss_pred CCCCCCCCHHHHH
Q 001759 712 PAFPGGQTAADLA 724 (1017)
Q Consensus 712 ~~d~~G~TPLhlA 724 (1017)
++|.+.+..+
T Consensus 98 ---PdG~~~~eat 107 (117)
T KOG4214|consen 98 ---PDGTALIEAT 107 (117)
T ss_pred ---CCchhHHhhc
Confidence 7888877654
No 83
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.18 E-value=3.3e-11 Score=100.31 Aligned_cols=54 Identities=31% Similarity=0.449 Sum_probs=33.2
Q ss_pred CCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHH
Q 001759 645 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLV 698 (1017)
Q Consensus 645 G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL 698 (1017)
|+||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 566777777777777777777667777766666777777777777777766664
No 84
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.18 E-value=1.3e-10 Score=139.06 Aligned_cols=156 Identities=20% Similarity=0.165 Sum_probs=122.6
Q ss_pred chHHHHHHHHHH--hhHHHHHHHHHHhCC-C---CCCccC-CCCCcHHHHHHHcCChhhHHHHHhCCCCCCcc-------
Q 001759 609 NSRDKLIQNLLR--NRLCEWLVWKIHEGG-K---GPNVID-DGGQGVVHLAAALGYEWAMRPIIATGVSPNFR------- 674 (1017)
Q Consensus 609 ~~~~~ll~~al~--~~l~e~Lv~~Lle~G-a---d~n~~D-~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~------- 674 (1017)
...+++||.++- ...+..++..|++.- . ++-.-+ ..|+||||+|+.+.+.++|++||+.||||+++
T Consensus 141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~ 220 (782)
T KOG3676|consen 141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFC 220 (782)
T ss_pred chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccC
Confidence 356777777765 444545555555432 1 222222 36999999999999999999999999999874
Q ss_pred --CC--------------CCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001759 675 --DA--------------RGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 675 --D~--------------~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe 738 (1017)
|. .|..||-+||..+.++|+++|+++|||++++| ..|+|.||..+..-..++-.++++
T Consensus 221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqD------S~GNTVLH~lVi~~~~~My~~~L~ 294 (782)
T KOG3676|consen 221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQD------SNGNTVLHMLVIHFVTEMYDLALE 294 (782)
T ss_pred cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccc------cCCChHHHHHHHHHHHHHHHHHHh
Confidence 11 37889999999999999999999999999988 799999999999988899999999
Q ss_pred ccCCCCCcCCccccCccchhHHHHH----hHHHHHHHHHc
Q 001759 739 ADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQI 774 (1017)
Q Consensus 739 ~Ga~~~~a~l~l~d~~~G~Ta~~ia----~~~~v~~L~e~ 774 (1017)
.|++ +...+.|++ |.||+.+| ..++.+.++++
T Consensus 295 ~ga~---~l~~v~N~q-gLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 295 LGAN---ALEHVRNNQ-GLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred cCCC---ccccccccC-CCChHHHHHHhhhHHHHHHHHHh
Confidence 9955 447788888 88976555 45666777777
No 85
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=99.17 E-value=5.3e-10 Score=136.97 Aligned_cols=268 Identities=18% Similarity=0.187 Sum_probs=165.4
Q ss_pred ceEEEEEccCCCCCCCCCCCceEEEeCCeecceee----eeCCeEEeecCC-------CCCceeeEE--------EecCC
Q 001759 454 ETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEV----LTDNVIRCQAPS-------HAAGRVPFY--------ITGSN 514 (1017)
Q Consensus 454 gtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~----~~~gvLrC~~Pp-------h~pG~Vp~~--------Vt~~n 514 (1017)
.-+|+|+-.. +.|.-.=|++.|-..- ...+.+.|.+-. -.+|+.-=| |..
T Consensus 402 ~qlf~I~DfS---------P~Wsy~~ggvKVlV~G~~~~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~h~~G~V~l-- 470 (975)
T KOG0520|consen 402 EQLFTITDFS---------PEWSYLDGGVKVLVTGFPQDETRSNYSCMFGEQRVPAELIQEGVLRCYAPPHEPGVVNL-- 470 (975)
T ss_pred cceeeeeccC---------cccccCCCCcEEEEecCccccCCCceEEEeCCccccHHHhhcceeeeecCccCCCeEEE--
Confidence 6677777653 3677777777654332 234579998762 334543221 221
Q ss_pred CcccC--cceeeeeecCCCCCCCCccccCCCchHHHHHHHHHHhhccCCCcccccccccchhhhhhHHHHhhcccCCCCc
Q 001759 515 RLACS--EVREFEYREKPSKAGYPVASKIAPEDEVRLQTRLAKFLYLDPERKWFDCTIEDCNKCKLKNTIYSMRGDSEKD 592 (1017)
Q Consensus 515 ~~~cS--Ev~~FEyr~~~~~~~~~~~~~~~~~~e~~Lq~Rl~~LL~~~~~~~~~~~~~~~~ek~~l~~~i~~l~~~~~~~ 592 (1017)
++.|+ ....||||.-..........+..++++..++|.+...|..-... ......+...
T Consensus 471 ~V~c~~~~~~~se~ref~~~~~~~~~~d~~s~~d~~~~~sl~~rl~~~~~r--------------~~~~~~s~~~----- 531 (975)
T KOG0520|consen 471 QVTCRISGLACSEVREFAYLVQPSQQIDKLSWEDFLFQMSLLHRLETMLNR--------------KQSILSSKPS----- 531 (975)
T ss_pred EEEecccceeeeeehheeecccCcccccccccccchhhhHHHHHHHHHHHH--------------hHhHhhccCC-----
Confidence 44666 77889999876555544445556689999999999887521110 1111111100
Q ss_pred cccccccccccccCCCchHHHHHHHHHHhhHHHHHHHHHHhCC--CCCCccCCCCCcHHHHHHHcCChhhHHHHHhC-CC
Q 001759 593 WGRVDESPMAIEGDCPNSRDKLIQNLLRNRLCEWLVWKIHEGG--KGPNVIDDGGQGVVHLAAALGYEWAMRPIIAT-GV 669 (1017)
Q Consensus 593 w~~l~e~l~~~~~~~~~~~~~ll~~al~~~l~e~Lv~~Lle~G--ad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~-Ga 669 (1017)
-+.. .+. .... |..-+..-+.+|.- .++... .......-.|+|.||+++..++.|+++.+++- |-
T Consensus 532 ~~n~-------~~~-~~~~---l~skv~~l~~~~~~-r~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~ 599 (975)
T KOG0520|consen 532 TENT-------SDA-ESGN---LASKVVHLLNEWAY-RLLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGS 599 (975)
T ss_pred cccc-------ccc-cchh---HHHHHHHHHHHHHH-HHHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhccccc
Confidence 0000 000 0000 11111111112221 111111 12333455789999999999999999999986 77
Q ss_pred CCCccCCCCCchhhHHHhcCCHHHHHHHH-HcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCC-cC
Q 001759 670 SPNFRDARGRTALHWASYFGREETVIMLV-KLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL-SS 747 (1017)
Q Consensus 670 dvn~~D~~G~TPLH~Aa~~G~~eiV~~LL-~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~-a~ 747 (1017)
..+..|..|.--+|+ |..++.+++-+|+ -.|..++++| ..|+||||+|+..||..++..|++.|++..+ .+
T Consensus 600 ~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D------~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~td 672 (975)
T KOG0520|consen 600 GDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRD------RNGWTPLHWAAFRGREKLVASLIELGADPGAVTD 672 (975)
T ss_pred CchhhcccCCChhhH-hhhcCCceeEEEEeeccccccccc------CCCCcccchHhhcCHHHHHHHHHHhccccccccC
Confidence 777778888888888 5556666666555 4588888888 6999999999999999999999999977664 34
Q ss_pred CccccCccchhHHHHHhHHHHHHH
Q 001759 748 LTVNENGMDNVAAALAAEKANETA 771 (1017)
Q Consensus 748 l~l~d~~~G~Ta~~ia~~~~v~~L 771 (1017)
++-..-. |.|+++++...+...+
T Consensus 673 ps~~~p~-g~ta~~la~s~g~~gi 695 (975)
T KOG0520|consen 673 PSPETPG-GKTAADLARANGHKGI 695 (975)
T ss_pred CCCCCCC-CCchhhhhhcccccch
Confidence 4444444 8888888765544443
No 86
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.09 E-value=1.7e-10 Score=95.96 Aligned_cols=54 Identities=37% Similarity=0.580 Sum_probs=46.3
Q ss_pred CCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHH
Q 001759 678 GRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLA 737 (1017)
Q Consensus 678 G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LL 737 (1017)
|+||||+||..|+.+++++|++.|++++.+| ..|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d------~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQD------EDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-------TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHccCHHHHHHHC
Confidence 7899999999999999999999999999987 69999999999999999999996
No 87
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=99.08 E-value=5.3e-10 Score=100.82 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=74.6
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeeccee-eeeCCeEEeecCCCCCceeeEEEecCCCccc
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAE-VLTDNVIRCQAPSHAAGRVPFYITGSNRLAC 518 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae-~~~~gvLrC~~Pph~pG~Vp~~Vt~~n~~~c 518 (1017)
.|++|+|.|++..||++|+|.|.+|.. ....+.|.||+...++. ++.++.|.|..|++.+|.+++.|..++...+
T Consensus 2 ~I~si~P~~~~~~gg~~ItI~G~~f~~----~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~~~~~~v~v~~~~~~~~ 77 (85)
T PF01833_consen 2 VITSISPNSGSISGGTNITITGSNFGS----NSSNISVKIGGSQCTVITVVSSTQITCTSPALPSGNVNVSVTVNGQQIY 77 (85)
T ss_dssp EEEEEESSEEETTCTSEEEEEEESSES----SSTTEEEEETTEEEEEEGEEETTEEEEE--SCSSEEEEEEEEETTSEEE
T ss_pred EEEEEECCeEecCCCEEEEEEEEeecc----cCCceEEEECCEeeeEEEEECCcEEEEEECCCCCccEEEEEEECCcCeE
Confidence 699999999999999999999999922 25689999999988888 9999999999999999999999999887888
Q ss_pred Ccceeeee
Q 001759 519 SEVREFEY 526 (1017)
Q Consensus 519 SEv~~FEy 526 (1017)
++...|+|
T Consensus 78 ~~~~~F~Y 85 (85)
T PF01833_consen 78 SNNTSFTY 85 (85)
T ss_dssp EEEEEEEE
T ss_pred ECCeeeEC
Confidence 99999998
No 88
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.06 E-value=4.2e-10 Score=139.14 Aligned_cols=104 Identities=26% Similarity=0.299 Sum_probs=88.7
Q ss_pred HHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHH
Q 001759 615 IQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETV 694 (1017)
Q Consensus 615 l~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV 694 (1017)
|..++..+..+ .++.|++.|+++|.+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++
T Consensus 86 L~~aa~~G~~~-~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv 164 (664)
T PTZ00322 86 LCQLAASGDAV-GARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV 164 (664)
T ss_pred HHHHHHcCCHH-HHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence 34444444443 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-------CCCCCCCCCCCCCCCCCCCHHHHHH
Q 001759 695 IMLVKL-------GAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 695 ~~LL~~-------GAdvn~~dd~~~~d~~G~TPLhlAa 725 (1017)
++|+.+ |++++..+ ..|.+|+..+.
T Consensus 165 ~~Ll~~~~~~~~~ga~~~~~~------~~g~~~~~~~~ 196 (664)
T PTZ00322 165 QLLSRHSQCHFELGANAKPDS------FTGKPPSLEDS 196 (664)
T ss_pred HHHHhCCCcccccCCCCCccc------cCCCCccchhh
Confidence 999998 66665544 67777766544
No 89
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.04 E-value=5.8e-10 Score=119.04 Aligned_cols=108 Identities=23% Similarity=0.216 Sum_probs=97.3
Q ss_pred CcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001759 646 QGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 646 ~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa 725 (1017)
..+|.-+...|..+....||..--++|.+|..|.|+|..|+..|+.++|++||+.|||+|...+ ..+.||||+|+
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh-----g~~YTpLmFAA 87 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH-----GTLYTPLMFAA 87 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc-----cccccHHHHHH
Confidence 5788889999999999999988777999999999999999999999999999999999998764 78999999999
Q ss_pred hcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh
Q 001759 726 SRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 726 ~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~ 764 (1017)
..|+.++.++|++.| +.+.+.|.- |+||+..+.
T Consensus 88 LSGn~dvcrllldaG-----a~~~~vNsv-grTAaqmAA 120 (396)
T KOG1710|consen 88 LSGNQDVCRLLLDAG-----ARMYLVNSV-GRTAAQMAA 120 (396)
T ss_pred HcCCchHHHHHHhcc-----Cccccccch-hhhHHHHHH
Confidence 999999999999999 666777777 999776654
No 90
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=4e-10 Score=127.94 Aligned_cols=106 Identities=26% Similarity=0.230 Sum_probs=91.0
Q ss_pred HHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhc
Q 001759 648 VVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSR 727 (1017)
Q Consensus 648 pLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~ 727 (1017)
+|.-|+..|-.++|+.++..--|+...+..|-||||-|+..||.+||++||+.|+++|+.| .+||||||+|+.+
T Consensus 553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~D------SdGWTPLHCAASC 626 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAAD------SDGWTPLHCAASC 626 (752)
T ss_pred HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCcc------CCCCchhhhhhhc
Confidence 3455888999999999999889999999999999999999999999999999999999988 7999999999999
Q ss_pred CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh
Q 001759 728 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 728 G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~ 764 (1017)
++..+++.|++.|+.... .++.| +.||++-|.
T Consensus 627 Nnv~~ckqLVe~GaavfA--sTlSD---meTa~eKCe 658 (752)
T KOG0515|consen 627 NNVPMCKQLVESGAAVFA--STLSD---METAAEKCE 658 (752)
T ss_pred CchHHHHHHHhccceEEe--eeccc---ccchhhhcc
Confidence 999999999999953322 22322 557776663
No 91
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.03 E-value=8e-10 Score=132.38 Aligned_cols=123 Identities=26% Similarity=0.272 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCcc--------CC---------------CCCcHHHHHHHcCChhhHHHHHh
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVI--------DD---------------GGQGVVHLAAALGYEWAMRPIIA 666 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~--------D~---------------~G~TpLH~Aa~~G~~~iV~~LL~ 666 (1017)
...+.||.++.+...+ ++.+|++.|+|++.+ +. .|..||-+||..+..+++++|++
T Consensus 183 ~GqSaLHiAIv~~~~~-~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~ 261 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAE-LVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA 261 (782)
T ss_pred cCcchHHHHHHhccHH-HHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence 4467899999988665 568899999999862 11 26789999999999999999999
Q ss_pred CCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc
Q 001759 667 TGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA--PGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 739 (1017)
Q Consensus 667 ~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAd--vn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~ 739 (1017)
+|||+|++|.+|+|.||..+..-..++-.+++++|++ ..+++ ..|.|||-+|+..|..++.+.+++.
T Consensus 262 ~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N------~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 262 HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRN------NQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccc------cCCCChHHHHHHhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 55555 7999999999999999999999998
No 92
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.91 E-value=8.3e-09 Score=94.35 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=69.1
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCC-CCceeeEEEecCCCccc
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSH-AAGRVPFYITGSNRLAC 518 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph-~pG~Vp~~Vt~~n~~~c 518 (1017)
.|+.|+|..||..|||+|+|.|.+|.. .....|+||+.+.....+.+..|.|.+|++ .+|.++|.|..++...
T Consensus 2 ~I~~i~P~~Gp~~GGT~vtI~G~~~~~-----~~~~~V~ig~~~C~~~~~~~~~i~C~tp~~~~~~~~~v~V~~d~~~~- 75 (85)
T cd01179 2 SITSLSPSYGPQSGGTRLTITGKHLNA-----GSSVRVTVGGQPCKILSVSSSQIVCLTPPSASPGEAPVKVLIDGARR- 75 (85)
T ss_pred eeeEEcCCCCCCCCCEEEEEEEECCCC-----CCeEEEEECCeEeeEEEecCCEEEEECCCCCCCceEEEEEEECCccc-
Confidence 699999999999999999999999954 345899999997666667888999999995 4688999998877633
Q ss_pred Ccceeeeeec
Q 001759 519 SEVREFEYRE 528 (1017)
Q Consensus 519 SEv~~FEyr~ 528 (1017)
+....|+|.+
T Consensus 76 ~~~~~F~Y~~ 85 (85)
T cd01179 76 LAPLVFTYTE 85 (85)
T ss_pred CCCccEEEeC
Confidence 4456899864
No 93
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=98.88 E-value=1.1e-08 Score=93.25 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=68.7
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEe-CCeecceeeeeCCeEEeecCCCCC---ceeeEEEecCCC
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMF-GEIEVPAEVLTDNVIRCQAPSHAA---GRVPFYITGSNR 515 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~F-Gd~~vpae~~~~gvLrC~~Pph~p---G~Vp~~Vt~~n~ 515 (1017)
.|+.|+|.+++.+|||+|+|.|.+|.. ...+.|+| |+.......+.+..|.|.+|++.. |.|.|.|...+.
T Consensus 2 ~I~~i~P~~g~~~GGt~itI~G~~f~~-----~~~~~v~~~g~~~c~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~ 76 (89)
T cd00102 2 VITSISPSSGPVSGGTEVTITGSNFGS-----GSNLRVTFGGGVPCSVLSVSSTAIVCTTPPYANPGPGPVEVTVDRGNG 76 (89)
T ss_pred EEeEEECCcCCCCCCeEEEEEEECCCC-----CCcEEEEEeCCCeEEEEEecCCEEEEECCCCCCCCcEEEEEEEeCCCC
Confidence 699999999999999999999999954 22699999 898777667789999999999544 888888876543
Q ss_pred cccCcceeeeee
Q 001759 516 LACSEVREFEYR 527 (1017)
Q Consensus 516 ~~cSEv~~FEyr 527 (1017)
..++....|+|.
T Consensus 77 ~~~~~~~~F~Y~ 88 (89)
T cd00102 77 GITSSPLTFTYV 88 (89)
T ss_pred cccCCCccEEee
Confidence 456777889986
No 94
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.86 E-value=2.6e-09 Score=128.95 Aligned_cols=160 Identities=18% Similarity=0.052 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCcc-CCCCCchhhHHHhc
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFR-DARGRTALHWASYF 688 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~-D~~G~TPLH~Aa~~ 688 (1017)
..++.|-.+|..+ ++.++.+|+.+|+++..+|+.|.+||.+|+-.||..+|+.|+.+.++++.+ |+.+.|+|-+||..
T Consensus 756 n~~t~LT~acagg-h~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg 834 (2131)
T KOG4369|consen 756 NIKTNLTSACAGG-HREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG 834 (2131)
T ss_pred cccccccccccCc-cHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence 3445555666655 667788999999999999999999999999999999999999999999874 77899999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHH
Q 001759 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKAN 768 (1017)
Q Consensus 689 G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v 768 (1017)
|+.++|.+||.+|++-..++ -...|||.+|+..|+.+|+.+|+..|...+-..-.-.+-.+...|...++..++
T Consensus 835 gr~~vvelLl~~gankehrn------vsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at 908 (2131)
T KOG4369|consen 835 GRTRVVELLLNAGANKEHRN------VSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAAT 908 (2131)
T ss_pred CcchHHHHHHHhhccccccc------hhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHH
Confidence 99999999999999877666 577999999999999999999999994333211111111112235566778888
Q ss_pred HHHHHcCC
Q 001759 769 ETAAQIGV 776 (1017)
Q Consensus 769 ~~L~e~~a 776 (1017)
..|++.+.
T Consensus 909 ~~ll~~gs 916 (2131)
T KOG4369|consen 909 LSLLQPGS 916 (2131)
T ss_pred HHHhcccc
Confidence 88888775
No 95
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.69 E-value=4.9e-08 Score=110.65 Aligned_cols=95 Identities=29% Similarity=0.383 Sum_probs=86.7
Q ss_pred CCccCCCCCcH------HHHHHHcCChhhHHHHHhCCCCCCccCCC-CCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCC
Q 001759 638 PNVIDDGGQGV------VHLAAALGYEWAMRPIIATGVSPNFRDAR-GRTALHWASYFGREETVIMLVKLGAAPGAVEDP 710 (1017)
Q Consensus 638 ~n~~D~~G~Tp------LH~Aa~~G~~~iV~~LL~~Gadvn~~D~~-G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~ 710 (1017)
+-.+|++|.|. ||-.++.|+.+.+--||..||++|+.+.. |.||||.||..|...-+++|+-+|||+++.|
T Consensus 120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d-- 197 (669)
T KOG0818|consen 120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQD-- 197 (669)
T ss_pred CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCC--
Confidence 34567777665 89999999999999999999999998875 9999999999999999999999999999988
Q ss_pred CCCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001759 711 TPAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 711 ~~~d~~G~TPLhlAa~~G~~~iv~~LLe 738 (1017)
..|.||+.+|...||.++++.|++
T Consensus 198 ----~~GmtP~~~AR~~gH~~laeRl~e 221 (669)
T KOG0818|consen 198 ----SSGMTPVDYARQGGHHELAERLVE 221 (669)
T ss_pred ----CCCCcHHHHHHhcCchHHHHHHHH
Confidence 799999999999999999998887
No 96
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.60 E-value=2.9e-07 Score=84.68 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=63.6
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCC-CCCceeeEEEecCCCc--
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-HAAGRVPFYITGSNRL-- 516 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-h~pG~Vp~~Vt~~n~~-- 516 (1017)
.|+.|+|..|+..|||.|+|.|.+|... .....|.||+.+.....+.+..|.|.+|+ ..+|..++.|..++..
T Consensus 2 ~I~~i~P~~g~~~Ggt~vtI~G~~f~~~----~~~~~V~ig~~~C~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~~ 77 (90)
T cd00603 2 VITSISPSSGPLSGGTRLTITGSNLGSG----SPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGEGPVEVTVDGANVS 77 (90)
T ss_pred eEEEEcCCCCCCCCCeEEEEEEECCCCC----CceEEEEECCEECcEEecCCCEEEEECCCCCCCCcEeEEEEECCcccc
Confidence 6999999999999999999999999652 24799999998666666778899999999 4442344444444443
Q ss_pred -ccCcceeeeee
Q 001759 517 -ACSEVREFEYR 527 (1017)
Q Consensus 517 -~cSEv~~FEyr 527 (1017)
..+....|+|.
T Consensus 78 ~~~~~~~~F~Y~ 89 (90)
T cd00603 78 ARVLSNTTFTYV 89 (90)
T ss_pred ccccCCcceEEe
Confidence 24555668875
No 97
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.57 E-value=3.7e-08 Score=119.37 Aligned_cols=121 Identities=22% Similarity=0.174 Sum_probs=103.8
Q ss_pred CCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001759 645 GQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 724 (1017)
Q Consensus 645 G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlA 724 (1017)
-.|+|..||..||.++|++|+..|+++..+|+.|.+||.+|+-.||..+|..|+.+.+++.+..| ..+.|+|.+|
T Consensus 757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsd-----rtkdt~lSla 831 (2131)
T KOG4369|consen 757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSD-----RTKDTMLSLA 831 (2131)
T ss_pred ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcc-----cccCceEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999875 8999999999
Q ss_pred HhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHH----HhHHHHHHHHHcCC
Q 001759 725 SSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAAL----AAEKANETAAQIGV 776 (1017)
Q Consensus 725 a~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~i----a~~~~v~~L~e~~a 776 (1017)
|..|..++|++||.+|+.. ..++-. ..||+.+ |..+++..|+..|+
T Consensus 832 csggr~~vvelLl~~gank-----ehrnvs-DytPlsla~Sggy~~iI~~llS~Gs 881 (2131)
T KOG4369|consen 832 CSGGRTRVVELLLNAGANK-----EHRNVS-DYTPLSLARSGGYTKIIHALLSSGS 881 (2131)
T ss_pred cCCCcchHHHHHHHhhccc-----cccchh-hcCchhhhcCcchHHHHHHHhhccc
Confidence 9999999999999999443 333322 3344444 45677777777775
No 98
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.55 E-value=2.9e-08 Score=117.80 Aligned_cols=83 Identities=24% Similarity=0.371 Sum_probs=78.7
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCC-CCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 001759 638 PNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDAR-GRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPG 716 (1017)
Q Consensus 638 ~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~-G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~ 716 (1017)
.|.+|..|+|+||+|+..|...++++||.+|++++.+|.. |+||||-|..+|+.+|+-+||.+|+...+.| .+
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~D------ke 118 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKD------KE 118 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEec------cc
Confidence 5779999999999999999999999999999999999986 9999999999999999999999999998888 79
Q ss_pred CCCHHHHHHh
Q 001759 717 GQTAADLASS 726 (1017)
Q Consensus 717 G~TPLhlAa~ 726 (1017)
|..||++-++
T Consensus 119 glsplq~~~r 128 (1267)
T KOG0783|consen 119 GLSPLQFLSR 128 (1267)
T ss_pred CCCHHHHHhh
Confidence 9999998766
No 99
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=98.53 E-value=3.2e-07 Score=84.28 Aligned_cols=84 Identities=25% Similarity=0.293 Sum_probs=66.4
Q ss_pred eEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeee--eCCeEEeecCC-C-CCceeeE-EEecC
Q 001759 439 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVL--TDNVIRCQAPS-H-AAGRVPF-YITGS 513 (1017)
Q Consensus 439 f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~--~~gvLrC~~Pp-h-~pG~Vp~-~Vt~~ 513 (1017)
..|+.|+|.+|+..|||+|+|+|.+|.. .....|.|+...+++.+. .+..|.|.+|+ + .++.+++ .|...
T Consensus 2 P~I~~i~P~~g~~~GGt~iti~G~nf~~-----~~~~~~~~~~~~~~c~~~~~~~~~i~C~tp~~~~~~~~~~v~~v~~~ 76 (90)
T smart00429 2 PVITRISPTSGPVSGGTEITLCGKNLDS-----ISVVFVEVGVGEAPCTFLPSSSTAIVCKTPPYHTIPGSVPVREVGLR 76 (90)
T ss_pred CEEEEEccCcCcCCCCeEEEEeeecCCc-----ceEEEEEEEeCCEEeEEeCCcceEEEEECCCCCCCCCCcCeEEEEEe
Confidence 4799999999999999999999999955 557788888766777776 46789999999 4 6788888 77766
Q ss_pred CCcccCcceeeeee
Q 001759 514 NRLACSEVREFEYR 527 (1017)
Q Consensus 514 n~~~cSEv~~FEyr 527 (1017)
+...-++...|+|.
T Consensus 77 ~~~~~~~~~~f~y~ 90 (90)
T smart00429 77 NGGVPSSPQPFTYV 90 (90)
T ss_pred CCCccCcccCeEEC
Confidence 65544444567763
No 100
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.52 E-value=4.7e-07 Score=84.49 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=67.0
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe-ecce--eeeeCCeEEeecCCCCC--ceeeEEEecCC
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPA--EVLTDNVIRCQAPSHAA--GRVPFYITGSN 514 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~-~vpa--e~~~~gvLrC~~Pph~p--G~Vp~~Vt~~n 514 (1017)
.|+.|+|..||..|||+|+|.|.+|.... +.....|++|+. +.+. .......|.|.+||+.+ +.++|.|..++
T Consensus 2 ~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~--~~~~~~V~ig~~~C~i~~~~~~~~~~I~C~t~~~~~~~~~~~V~V~v~~ 79 (94)
T cd01180 2 VITEFFPLSGPLEGGTRLTICGSNLGLRK--NDVRHGVRVGGVPCNPEPPEYSSSEKIVCTTGPAGNPVFNGPVEVTVGH 79 (94)
T ss_pred eeEEEeCCCCCCCCCEEEEEEEEcCCCCc--ccceeEEEECCEECcccCCCcCcCCEEEEECCCCCCCCcceEEEEEECC
Confidence 69999999999999999999999996532 124678999998 3332 25567789999999654 78888888766
Q ss_pred Cc-ccCcceeeeeec
Q 001759 515 RL-ACSEVREFEYRE 528 (1017)
Q Consensus 515 ~~-~cSEv~~FEyr~ 528 (1017)
.. .++.-..|+|.+
T Consensus 80 ~~~~~~~~~~F~Y~~ 94 (94)
T cd01180 80 GSFRTESSEGFSFVD 94 (94)
T ss_pred ceecccccCceEEeC
Confidence 53 456667888864
No 101
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.48 E-value=4.7e-07 Score=104.57 Aligned_cols=95 Identities=27% Similarity=0.331 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCC--CCc--cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhH
Q 001759 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKG--PNV--IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHW 684 (1017)
Q Consensus 609 ~~~~~ll~~al~~~l~e~Lv~~Lle~Gad--~n~--~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~ 684 (1017)
....+++.....+.+...+ +|+.+|.. +|. -+.+|+|+||+||..|+..+.++||.+|+|+..+|.+|+|||.|
T Consensus 623 ~lgqqLl~A~~~~Dl~t~~--lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~y 700 (749)
T KOG0705|consen 623 PLGQQLLRAVAAEDLQTAI--LLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFY 700 (749)
T ss_pred chHHHHHHHHHHHHHHHHH--HHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhh
Confidence 4455666655555543322 46677753 332 45678999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCC
Q 001759 685 ASYFGREETVIMLVKLGAAPG 705 (1017)
Q Consensus 685 Aa~~G~~eiV~~LL~~GAdvn 705 (1017)
|-..|..+|+.+|+.+|+...
T Consensus 701 ar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 701 ARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred HhhcccHHHHHHHHHcCCCcc
Confidence 999999999999999998643
No 102
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.42 E-value=2.3e-07 Score=105.03 Aligned_cols=94 Identities=30% Similarity=0.274 Sum_probs=85.2
Q ss_pred cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCCCCCCC
Q 001759 641 IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL-GAAPGAVEDPTPAFPGGQT 719 (1017)
Q Consensus 641 ~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~-GAdvn~~dd~~~~d~~G~T 719 (1017)
++.++...+.+||..|....++-+.-.|.|++.+|.+.+|+||.||..|+.+++++|++. +.+++..| .+|+|
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD------Rw~rt 575 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD------RWGRT 575 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh------ccCCC
Confidence 345667789999999999999999999999999999999999999999999999999964 66766665 89999
Q ss_pred HHHHHHhcCcHHHHHHHHHcc
Q 001759 720 AADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 720 PLhlAa~~G~~~iv~~LLe~G 740 (1017)
||+-|..-+|.+++++|-+.-
T Consensus 576 PlDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 576 PLDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred cchHhHhcCcHHHHHHHHHHh
Confidence 999999999999999999865
No 103
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=98.34 E-value=1.7e-06 Score=81.49 Aligned_cols=72 Identities=22% Similarity=0.482 Sum_probs=57.5
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe-ecceeeeeCCeEEeecCCCCC-------ceeeEEEe
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPAEVLTDNVIRCQAPSHAA-------GRVPFYIT 511 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~-~vpae~~~~gvLrC~~Pph~p-------G~Vp~~Vt 511 (1017)
+|++|+|.|+|.+|||.|+|+|.+|..- ....+.+.||+. .+++.+..+..+.|..|+... +..|+.+.
T Consensus 2 ~I~~i~P~~g~~SGGt~itV~G~~Lds~---q~p~~~V~~~~~~~~~C~v~s~~~i~C~tP~~~~~~~~~~~~~~~~~~~ 78 (99)
T cd01181 2 TITRIEPEWSFLSGGTPITVTGTNLNTV---QEPRIRVKYGGVEKTSCKVRNSTLMTCPAPSLALLNRSPEPGERPVEFG 78 (99)
T ss_pred EEEEeccCCCccCCCEEEEEEeeccCcc---cccEEEEEECCceeccceeCCCCEEEeCCCCCcccccccCCCCcCeEEE
Confidence 6999999999999999999999999552 355899999995 457888888899999998332 55555555
Q ss_pred cCC
Q 001759 512 GSN 514 (1017)
Q Consensus 512 ~~n 514 (1017)
.+.
T Consensus 79 fd~ 81 (99)
T cd01181 79 LDG 81 (99)
T ss_pred Eec
Confidence 433
No 104
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.33 E-value=1.3e-06 Score=100.27 Aligned_cols=123 Identities=24% Similarity=0.332 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCC--CCccCCCCCchhhHHHh
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVS--PNFRDARGRTALHWASY 687 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gad--vn~~D~~G~TPLH~Aa~ 687 (1017)
..+.+|+.++...++.. ..+...|.++-.++.+..|.||+|+..|+-++|++||++|-. +++.|..|.|+||-||.
T Consensus 866 iseeil~av~~~D~~kl--qE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~ 943 (1004)
T KOG0782|consen 866 ISEEILRAVLSSDLMKL--QETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC 943 (1004)
T ss_pred ccHHHHHHHHhccHHHH--HHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence 44566777766665542 224457778888999999999999999999999999999864 57788999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHcc
Q 001759 688 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 688 ~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~G 740 (1017)
.++-.++.+|++.||..-..| ..|.||-.-|-..|..+++.||-.+.
T Consensus 944 ~~~r~vc~~lvdagasl~ktd------~kg~tp~eraqqa~d~dlaayle~rq 990 (1004)
T KOG0782|consen 944 QRNRAVCQLLVDAGASLRKTD------SKGKTPQERAQQAGDPDLAAYLESRQ 990 (1004)
T ss_pred hcchHHHHHHHhcchhheecc------cCCCChHHHHHhcCCchHHHHHhhhh
Confidence 999999999999999987666 79999999999999999999997643
No 105
>PF13606 Ank_3: Ankyrin repeat
Probab=98.31 E-value=6e-07 Score=65.87 Aligned_cols=29 Identities=38% Similarity=0.444 Sum_probs=20.2
Q ss_pred CCCchhhHHHhcCCHHHHHHHHHcCCCCC
Q 001759 677 RGRTALHWASYFGREETVIMLVKLGAAPG 705 (1017)
Q Consensus 677 ~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn 705 (1017)
+|+||||+||..|+.++|++||++|+++|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 36677777777777777777777777665
No 106
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.27 E-value=4.1e-07 Score=108.34 Aligned_cols=82 Identities=24% Similarity=0.247 Sum_probs=77.1
Q ss_pred CCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCcc
Q 001759 671 PNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTV 750 (1017)
Q Consensus 671 vn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l 750 (1017)
.|.+|..|+|+||+|+..|...++++||++|++++.+|. ..|+||||-|...||.+|+-+||.+| ..+.+
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~-----ESG~taLHRaiyyG~idca~lLL~~g-----~SL~i 114 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDE-----ESGYTALHRAIYYGNIDCASLLLSKG-----RSLRI 114 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccc-----cccchHhhHhhhhchHHHHHHHHhcC-----CceEE
Confidence 678999999999999999999999999999999999985 78999999999999999999999999 89999
Q ss_pred ccCccchhHHHHH
Q 001759 751 NENGMDNVAAALA 763 (1017)
Q Consensus 751 ~d~~~G~Ta~~ia 763 (1017)
+|++ |..|+..-
T Consensus 115 ~Dke-glsplq~~ 126 (1267)
T KOG0783|consen 115 KDKE-GLSPLQFL 126 (1267)
T ss_pred eccc-CCCHHHHH
Confidence 9999 99988764
No 107
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.23 E-value=1.4e-06 Score=65.16 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCCchhhHHHhcCCHHHHHHHHHcCCCCCCCC
Q 001759 677 RGRTALHWASYFGREETVIMLVKLGAAPGAVE 708 (1017)
Q Consensus 677 ~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~d 708 (1017)
+|+||||+||..|+.+++++|+++|++++.++
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 36677777777777777777777777766654
No 108
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=98.21 E-value=7.9e-06 Score=74.14 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=67.1
Q ss_pred eEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCCCCceeeEEEecCCCccc
Q 001759 439 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLAC 518 (1017)
Q Consensus 439 f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph~pG~Vp~~Vt~~n~~~c 518 (1017)
..|..|+|.-|.. |++|+|.|.+|.+ ..-.++||+.+.+...|+|..|.|.+|.+.+|..++.|.-.++..
T Consensus 3 P~I~~i~P~~g~~--G~~VtI~G~gFg~------~~~~V~~g~~~a~v~s~sdt~I~~~vP~~~aG~~~V~V~~~~G~~- 73 (81)
T cd02849 3 PLIGHVGPMMGKA--GNTVTISGEGFGS------APGTVYFGTTAATVISWSDTRIVVTVPNVPAGNYDVTVKTADGAT- 73 (81)
T ss_pred CEEeeEcCCCCCC--CCEEEEEEECCCC------CCcEEEECCEEeEEEEECCCEEEEEeCCCCCceEEEEEEeCCCcc-
Confidence 4799999999986 8899999999954 246799999998999999999999999999999999999765554
Q ss_pred Ccceeeee
Q 001759 519 SEVREFEY 526 (1017)
Q Consensus 519 SEv~~FEy 526 (1017)
|....|+|
T Consensus 74 Sn~~~f~~ 81 (81)
T cd02849 74 SNGYNFEV 81 (81)
T ss_pred cCcEeeEC
Confidence 55555664
No 109
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.20 E-value=4.6e-05 Score=94.50 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCchhHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001759 799 AHAAALIQQAFRVRSFRHRQSIQSSDDVSEVSVDLVALGSLNKVSKMIHFEDYLHFAAIKIQQKYRGWKGRKDFLKIRNH 878 (1017)
Q Consensus 799 ~~AA~rIQ~afR~~s~Rkr~L~~~~~~~~e~~~sila~q~~~r~~~~~~~~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~ 878 (1017)
..++..||..+|++..|+++ .....+++.+|+.++|..+++ ...+..||+.||+.+|+|..||+|+.++.+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f--------~~~r~~~~~~Q~~~rG~~~r~-~~~~~~aai~~q~~~r~~~~r~~y~~~~~~ 743 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKF--------LQLRSAVIIIQAYSRGVLARR-ETEREAAAIGIQKECRSYLNRRRYRALIPA 743 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45677799999999999998 445556666677778888776 334889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001759 879 IVKLQAHVRGHQVRKQ 894 (1017)
Q Consensus 879 aV~IQa~~Rg~qaRK~ 894 (1017)
++.||+.+||+.+|++
T Consensus 744 ~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 744 SITIQSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999999984
No 110
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.20 E-value=1.6e-05 Score=98.39 Aligned_cols=125 Identities=22% Similarity=0.249 Sum_probs=89.0
Q ss_pred hhhchHHHHH--hHHHHHHHHHHHHHHhhhhhhhcc--cCCchhHHHHHHHHhccccccccchh------------hH--
Q 001759 788 LRGSLAAVRK--SAHAAALIQQAFRVRSFRHRQSIQ--SSDDVSEVSVDLVALGSLNKVSKMIH------------FE-- 849 (1017)
Q Consensus 788 lkdsL~AVR~--A~~AA~rIQ~afR~~s~Rkr~L~~--~~~~~~e~~~sila~q~~~r~~~~~~------------~~-- 849 (1017)
.-.-|..+|. ++.+.+..+..|. .|++.|.. ...+....|..++.. ....+++.+. ++
T Consensus 592 ~~GvLetiRiS~~g~P~r~~~~Ef~---~r~~~L~~~~~~~~~~~~~~~il~~-~~~~~yq~g~tkif~r~gq~~~le~~ 667 (862)
T KOG0160|consen 592 CCGVLETIRISCAGFPTRWTFIEFV---NRYGILMPNDSASDDLSLCKVILEK-LGLELYQIGKTKIFLRAGQIAVLEAR 667 (862)
T ss_pred ccceehhheeccccCCccccHHHHH---HHHhhcCcchhcccchHHHHHHHHH-hchhceeeeeeeeeeccchhHHHHHH
Confidence 3445666654 5667777777777 78888766 122336777777763 2211111111 11
Q ss_pred --HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001759 850 --DYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGS 917 (1017)
Q Consensus 850 --~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwrrkr~ 917 (1017)
.....+++.||+.+|||..||.|+.+|+.++.||+.+||+.+|+... ..+++..+++.++.|..++.
T Consensus 668 R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~ 736 (862)
T KOG0160|consen 668 RSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRR 736 (862)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHH
Confidence 14678888899999999999999999999999999999999999555 67778889998888765543
No 111
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.15 E-value=5.1e-06 Score=94.68 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhc
Q 001759 610 SRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDD-GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 610 ~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~-~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~ 688 (1017)
.-..-||..+..+..+..+. |+..|+++|..+. .|.||||.||..|..--+++|+-+|||+++.|.+|.||+.+|-..
T Consensus 132 ~LsrQLhasvRt~nlet~LR-ll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~ 210 (669)
T KOG0818|consen 132 DLSKQLHSSVRTGNLETCLR-LLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQG 210 (669)
T ss_pred HHHHHHHHHhhcccHHHHHH-HHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhc
Confidence 33455777788777777776 6788999999776 699999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHH
Q 001759 689 GREETVIMLVK 699 (1017)
Q Consensus 689 G~~eiV~~LL~ 699 (1017)
||.++..-|++
T Consensus 211 gH~~laeRl~e 221 (669)
T KOG0818|consen 211 GHHELAERLVE 221 (669)
T ss_pred CchHHHHHHHH
Confidence 99998877765
No 112
>PF13606 Ank_3: Ankyrin repeat
Probab=98.13 E-value=2.5e-06 Score=62.60 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHcCChhhHHHHHhCCCCCCc
Q 001759 644 GGQGVVHLAAALGYEWAMRPIIATGVSPNF 673 (1017)
Q Consensus 644 ~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~ 673 (1017)
+|+||||+||..|+.++|++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999984
No 113
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.12 E-value=3.1e-06 Score=63.25 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHcCChhhHHHHHhCCCCCCccCC
Q 001759 644 GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDA 676 (1017)
Q Consensus 644 ~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~ 676 (1017)
+|.||||+||..|+.+++++||.+|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999874
No 114
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.09 E-value=6.6e-06 Score=95.35 Aligned_cols=90 Identities=23% Similarity=0.189 Sum_probs=76.8
Q ss_pred HHHHHHcCChhhHHHHHhCCCCC----CccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001759 649 VHLAAALGYEWAMRPIIATGVSP----NFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 724 (1017)
Q Consensus 649 LH~Aa~~G~~~iV~~LL~~Gadv----n~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlA 724 (1017)
|.-|........+-+||.+|... ..-+.+|+||||+||..|++.+..+|+=+|+|+-++| ..|+|||.||
T Consensus 628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rd------a~g~t~l~ya 701 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARD------AHGRTALFYA 701 (749)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecc------cCCchhhhhH
Confidence 44566666777788899988543 2456678999999999999999999999999999888 7999999999
Q ss_pred HhcCcHHHHHHHHHccCCCC
Q 001759 725 SSRGHKGIAGYLAEADLSSH 744 (1017)
Q Consensus 725 a~~G~~~iv~~LLe~Ga~~~ 744 (1017)
...|..+|+.+|+.+|+...
T Consensus 702 r~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 702 RQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hhcccHHHHHHHHHcCCCcc
Confidence 99999999999999996543
No 115
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.05 E-value=7.8e-06 Score=94.62 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=55.0
Q ss_pred hCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc
Q 001759 633 EGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL 700 (1017)
Q Consensus 633 e~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~ 700 (1017)
+.+..++..|..|.||||+|+..|+...++.|+.+|+++..+|..||+|||-|+..|+..++..+|.+
T Consensus 43 ~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 43 KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 34556777888888888888888888888888888888888888888888888888888877777654
No 116
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.00 E-value=9.1e-06 Score=94.06 Aligned_cols=88 Identities=23% Similarity=0.213 Sum_probs=75.3
Q ss_pred cHHHHHHHcCChhhHHHH--HhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001759 647 GVVHLAAALGYEWAMRPI--IATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 724 (1017)
Q Consensus 647 TpLH~Aa~~G~~~iV~~L--L~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlA 724 (1017)
-|||+++.....+-+..+ .+.+..++.+|..|.||||+|+..|+...++.|+.+||++.+.+ ..|++|||-|
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN------~~gWs~L~EA 95 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKN------NEGWSPLHEA 95 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccc------cccccHHHHH
Confidence 459999988766655443 34567889999999999999999999999999999999998888 7999999999
Q ss_pred HhcCcHHHHHHHHHcc
Q 001759 725 SSRGHKGIAGYLAEAD 740 (1017)
Q Consensus 725 a~~G~~~iv~~LLe~G 740 (1017)
+..|+..++..++.+-
T Consensus 96 v~~g~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 96 VSTGNEQIITEVLRHL 111 (560)
T ss_pred HHcCCHHHHHHHHHHh
Confidence 9999998877776644
No 117
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=97.99 E-value=6.6e-05 Score=89.06 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=81.4
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhcccC------CchhHHHHHHHHhcccccccc-----------chh-h------H
Q 001759 794 AVRKSAHAAALIQQAFRVRSFRHRQSIQSS------DDVSEVSVDLVALGSLNKVSK-----------MIH-F------E 849 (1017)
Q Consensus 794 AVR~A~~AA~rIQ~afR~~s~Rkr~L~~~~------~~~~e~~~sila~q~~~r~~~-----------~~~-~------~ 849 (1017)
.||.|+.|-+..+..|. .||+.+.++. .+.++.+..++.. +...+.- ++. | +
T Consensus 617 rVrrAgfahRq~Y~~FL---~RYKmi~~~TWPn~~~g~dkd~v~vL~e~-~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~ 692 (1001)
T KOG0164|consen 617 RVRRAGFAHRQPYERFL---LRYKMICESTWPNWRGGSDKDGVKVLLEH-LGLAGDVAFGRTKIFIRSPRTLFALEEQRA 692 (1001)
T ss_pred hhhhcccccccchHHHH---HHHHhhCcccCCCCCCCCchhHHHHHHHH-hccchhhhcCceeEEEecchhHhhHHHHHH
Confidence 35889999999999998 9999987743 2225556666653 1111110 000 1 2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001759 850 DYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGF 922 (1017)
Q Consensus 850 ~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwrrkr~~Lr~~ 922 (1017)
.++-.-++.||+.||||.+|.+|+++|++++.|+ +||.+ ++.|.+..|+..++.|++.|.--+.+
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~-------K~ks~v~el~~~~rg~k~~r~ygk~~ 757 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRY-------KLKSYVQELQRRFRGAKQMRDYGKSI 757 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-------HHHHHHHHHHHHHHhhhhccccCCCC
Confidence 2466789999999999999999999999999999 88844 45566777778888887765444333
No 118
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=97.90 E-value=0.00027 Score=90.38 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=67.8
Q ss_pred chHHH--HHhHHHHHHHHHHHHHHhhhhhhhcccC---------CchhHHHHHHHHh-ccccccccchh---h-------
Q 001759 791 SLAAV--RKSAHAAALIQQAFRVRSFRHRQSIQSS---------DDVSEVSVDLVAL-GSLNKVSKMIH---F------- 848 (1017)
Q Consensus 791 sL~AV--R~A~~AA~rIQ~afR~~s~Rkr~L~~~~---------~~~~e~~~sila~-q~~~r~~~~~~---~------- 848 (1017)
-|..| +.|+.|.+..+..|+ .||+.|.... .+...++..|+.- ..-...++.+. |
T Consensus 658 VlE~IRIsraGFP~R~~f~EFv---~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~ 734 (1463)
T COG5022 658 VLETIRISRAGFPSRWTFDEFV---QRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLA 734 (1463)
T ss_pred hhhheeeccccCchhhhHHHHH---HHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHH
Confidence 34444 578999999999999 9999987622 1225666666642 01001112221 1
Q ss_pred ------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 849 ------EDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQY 895 (1017)
Q Consensus 849 ------~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~y 895 (1017)
+...+..|+.||++|||+..||+|+...+.+..||...+|++.|+.+
T Consensus 735 ~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~ 787 (1463)
T COG5022 735 ALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV 787 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Confidence 22578899999999999999999998877766666666666665443
No 119
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=97.88 E-value=8.4e-05 Score=67.48 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=67.0
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCCCCceeeEEEecCCCcccC
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLACS 519 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph~pG~Vp~~Vt~~n~~~cS 519 (1017)
.|..|.|.-|. -|+.|+|.|..|.+. .-.++||+.+.+...|++..|.|.+|.+.+|..++.|...++.. |
T Consensus 2 ~I~~i~P~~g~--pG~~VtI~G~gFg~~------~~~V~~g~~~a~v~s~sdt~I~~~VP~~~~g~~~i~V~~~~G~~-S 72 (81)
T cd00604 2 LIGSVGPVMGK--PGNTVTISGEGFGST------GGTVYFGGTAAEVLSWSDTSIVVEVPRVAPGNYNISVTTVDGVT-S 72 (81)
T ss_pred eEeeEcCCCCC--CCCEEEEEEECCCCC------ccEEEECCEEEEEEEECCCEEEEEeCCCCCCceEEEEEECCCcc-c
Confidence 68999999985 789999999999552 35799999999998999999999999999999999998755554 6
Q ss_pred cceeeeee
Q 001759 520 EVREFEYR 527 (1017)
Q Consensus 520 Ev~~FEyr 527 (1017)
....|+|.
T Consensus 73 n~~~f~~l 80 (81)
T cd00604 73 NGYNFEVL 80 (81)
T ss_pred CcEeEEEc
Confidence 66668874
No 120
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.84 E-value=1.3e-05 Score=99.84 Aligned_cols=99 Identities=29% Similarity=0.386 Sum_probs=86.8
Q ss_pred CCCCCCc--cCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 001759 634 GGKGPNV--IDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPT 711 (1017)
Q Consensus 634 ~Gad~n~--~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~ 711 (1017)
.++++|. .-..|.|+||.|+..|..-++++|++.|+++|.+|..|.||||.+...|+...+..|++.||++++.+
T Consensus 643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~--- 719 (785)
T KOG0521|consen 643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD--- 719 (785)
T ss_pred chhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC---
Confidence 3444443 23467999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001759 712 PAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 712 ~~d~~G~TPLhlAa~~G~~~iv~~LLe 738 (1017)
.+|.+||++|....+.+++-+|.-
T Consensus 720 ---~~~~~~l~~a~~~~~~d~~~l~~l 743 (785)
T KOG0521|consen 720 ---PDGKLPLDIAMEAANADIVLLLRL 743 (785)
T ss_pred ---ccCcchhhHHhhhccccHHHHHhh
Confidence 799999999988777777666653
No 121
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.81 E-value=5.4e-05 Score=77.66 Aligned_cols=65 Identities=35% Similarity=0.342 Sum_probs=34.8
Q ss_pred CCCCccCCCCCchhhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc
Q 001759 669 VSPNFRDARGRTALHWASYFGREETVIMLVKLG-AAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 739 (1017)
Q Consensus 669 advn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~G-Advn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~ 739 (1017)
.++|.+|..||||||.||..|..+.|.+|+.+| +.|...+ ..|.+++.+|-..|+.+++..|-+.
T Consensus 3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d------~ssldaaqlaek~g~~~fvh~lfe~ 68 (223)
T KOG2384|consen 3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD------ESSLDAAQLAEKGGAQAFVHSLFEN 68 (223)
T ss_pred CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc------cccchHHHHHHhcChHHHHHHHHHH
Confidence 345555555555555555555555555555555 4444444 4555555555555555555555544
No 122
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.75 E-value=2.1e-05 Score=89.53 Aligned_cols=85 Identities=25% Similarity=0.235 Sum_probs=72.4
Q ss_pred HHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHh-CCCCCCccCCCCCchhhHHHhcCCHHHHHH
Q 001759 618 LLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIA-TGVSPNFRDARGRTALHWASYFGREETVIM 696 (1017)
Q Consensus 618 al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~-~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~ 696 (1017)
+.+.+....+- .+.-.|.|++.+|.+.+|+||.||..|+.++|++||. .+++++.+|.+|+|||.-|..++|.+++++
T Consensus 513 aa~~GD~~alr-Rf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~ 591 (622)
T KOG0506|consen 513 AAKNGDLSALR-RFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKL 591 (622)
T ss_pred hhhcCCHHHHH-HHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHH
Confidence 44444444443 3445689999999999999999999999999999996 589999999999999999999999999999
Q ss_pred HHHcCCC
Q 001759 697 LVKLGAA 703 (1017)
Q Consensus 697 LL~~GAd 703 (1017)
|-+.-..
T Consensus 592 L~~~~~~ 598 (622)
T KOG0506|consen 592 LEEAQYP 598 (622)
T ss_pred HHHHhcc
Confidence 9876443
No 123
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.72 E-value=9.9e-05 Score=90.02 Aligned_cols=126 Identities=17% Similarity=0.024 Sum_probs=97.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCC---CCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcC
Q 001759 613 KLIQNLLRNRLCEWLVWKIHEGG---KGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFG 689 (1017)
Q Consensus 613 ~ll~~al~~~l~e~Lv~~Lle~G---ad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G 689 (1017)
..+..+++.+....+-+.|-+.+ .++|+.|.-|+++||+|..+-+.+++++|++++..+ .-+|.+|...|
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~ 99 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVG 99 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHH
Confidence 33444555554443333333332 478999999999999999999999999999998776 24899999999
Q ss_pred CHHHHHHHHHcCCCCC----CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCC
Q 001759 690 REETVIMLVKLGAAPG----AVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL 745 (1017)
Q Consensus 690 ~~eiV~~LL~~GAdvn----~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~ 745 (1017)
..++|++|+.+-.... ..+.+.+...-+.|||.+||..++.+|+++|+.+|+..+.
T Consensus 100 ~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 100 SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence 9999999998744321 2344456667889999999999999999999999976554
No 124
>PTZ00014 myosin-A; Provisional
Probab=97.70 E-value=0.00011 Score=92.38 Aligned_cols=102 Identities=19% Similarity=0.102 Sum_probs=73.0
Q ss_pred hhchHHH--HHhHHHHHHHHHHHHHHhhhhhhhccc-----CCchhHHHHHHHHhccc--------------cccccchh
Q 001759 789 RGSLAAV--RKSAHAAALIQQAFRVRSFRHRQSIQS-----SDDVSEVSVDLVALGSL--------------NKVSKMIH 847 (1017)
Q Consensus 789 kdsL~AV--R~A~~AA~rIQ~afR~~s~Rkr~L~~~-----~~~~~e~~~sila~q~~--------------~r~~~~~~ 847 (1017)
-+-|.++ +.+++|.++.+..|+ .||+.|... ..+..+.|..|+.. .. +|......
T Consensus 689 ~GvLE~iri~r~Gyp~R~~f~~F~---~rY~~L~~~~~~~~~~d~k~~~~~il~~-~~l~~~~~~iGkTKVFlr~~~~~~ 764 (821)
T PTZ00014 689 LSILEALQLRQLGFSYRRTFAEFL---SQFKYLDLAVSNDSSLDPKEKAEKLLER-SGLPKDSYAIGKTMVFLKKDAAKE 764 (821)
T ss_pred hhHHHHHHHHhcCCcccccHHHHH---HHHHhcCcccccCCCCCHHHHHHHHHHH-cCCCcccEEecCCeEEEcCcHHHH
Confidence 3445555 788999999999999 889888532 12446777777752 11 01000000
Q ss_pred h----HHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 848 F----EDY---LHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQ 894 (1017)
Q Consensus 848 ~----~~~---~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~ 894 (1017)
. +.+ ...++..||+.||||++||+|+++++++++||+++||+.+||+
T Consensus 765 Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 765 LTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 112 2357899999999999999999999999999999999999875
No 125
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.64 E-value=6.2e-05 Score=86.89 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=83.7
Q ss_pred HHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCCCCCCCHHHHHHhc
Q 001759 650 HLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAA--PGAVEDPTPAFPGGQTAADLASSR 727 (1017)
Q Consensus 650 H~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAd--vn~~dd~~~~d~~G~TPLhlAa~~ 727 (1017)
..|+..+..--+.-+-..|.++-.++.+.+|-||+|+..|+.++|++||++|.. .+..+ ..|.|+||-|+..
T Consensus 871 l~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~d------e~get~lhkaa~~ 944 (1004)
T KOG0782|consen 871 LRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD------ETGETALHKAACQ 944 (1004)
T ss_pred HHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh------hhhhHHHHHHHHh
Confidence 344444443333444556888889999999999999999999999999999864 23333 6999999999999
Q ss_pred CcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHh
Q 001759 728 GHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 728 G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~ 764 (1017)
++..++.+|+++| +.+.-.|.+ |.||.+.+.
T Consensus 945 ~~r~vc~~lvdag-----asl~ktd~k-g~tp~eraq 975 (1004)
T KOG0782|consen 945 RNRAVCQLLVDAG-----ASLRKTDSK-GKTPQERAQ 975 (1004)
T ss_pred cchHHHHHHHhcc-----hhheecccC-CCChHHHHH
Confidence 9999999999999 788888888 999987764
No 126
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.54 E-value=0.00014 Score=81.08 Aligned_cols=84 Identities=25% Similarity=0.224 Sum_probs=66.6
Q ss_pred CcHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001759 646 QGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 646 ~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa 725 (1017)
..-|..||+.|..+.|+.|++.|++||.+|.....||.+|+.+||+++|++||++||-...-+ ..|.-.+ +++
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdt------f~G~RC~-Yga 109 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDT------FDGDRCH-YGA 109 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccc------cCcchhh-hhh
Confidence 356889999999999999999999999999999999999999999999999999999665433 4565543 333
Q ss_pred hcCcHHHHHHHHH
Q 001759 726 SRGHKGIAGYLAE 738 (1017)
Q Consensus 726 ~~G~~~iv~~LLe 738 (1017)
.+ ..|=++|+.
T Consensus 110 Ln--d~IR~mlls 120 (516)
T KOG0511|consen 110 LN--DRIRRMLLS 120 (516)
T ss_pred hh--HHHHHHHHH
Confidence 32 234444444
No 127
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.51 E-value=0.00011 Score=49.38 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001759 877 NHIVKLQAHVRGHQVRKQYK 896 (1017)
Q Consensus 877 ~~aV~IQa~~Rg~qaRK~yk 896 (1017)
+++|+||++|||+++||+|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45555555555555555553
No 128
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.46 E-value=0.00022 Score=73.38 Aligned_cols=70 Identities=20% Similarity=0.083 Sum_probs=65.6
Q ss_pred CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCC-CCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCC
Q 001759 635 GKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATG-VSPNFRDARGRTALHWASYFGREETVIMLVKLGAAP 704 (1017)
Q Consensus 635 Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~G-advn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdv 704 (1017)
+.++|.+|..|||+|+.||..|..++|.+|+.+| +.|...|..|.+++.+|-..|+.++|..|.+.-.+.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et 72 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET 72 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence 4689999999999999999999999999999999 999999999999999999999999999999875443
No 129
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.25 E-value=0.00036 Score=46.92 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 001759 853 HFAAIKIQQKYRGWKGRKDFL 873 (1017)
Q Consensus 853 ~~AAv~IQk~~Rg~~~Rk~fl 873 (1017)
+.||+.||+.||||++|++|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 469999999999999999985
No 130
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.17 E-value=0.0012 Score=73.89 Aligned_cols=57 Identities=28% Similarity=0.234 Sum_probs=53.5
Q ss_pred chhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCC
Q 001759 680 TALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLS 742 (1017)
Q Consensus 680 TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~ 742 (1017)
--|..||+.|..+.|+.|++.|.++|.+| .....||.+|+..||.++|++|+++|+-
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnVN~vD------~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNVNAVD------RFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCcchhh------cccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 45899999999999999999999999998 6889999999999999999999999954
No 131
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.02 E-value=0.00049 Score=86.16 Aligned_cols=85 Identities=25% Similarity=0.317 Sum_probs=72.7
Q ss_pred CCCCCcc--CCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCC
Q 001759 668 GVSPNFR--DARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHL 745 (1017)
Q Consensus 668 Gadvn~~--D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~ 745 (1017)
|+++|.. -..|.|+||.|+..|...++.+|++.|+++|..+ ..|+||||.+...|+...+..|+++|
T Consensus 644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d------~~g~~plh~~~~~g~~~~~~~ll~~~----- 712 (785)
T KOG0521|consen 644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALD------SKGRTPLHHATASGHTSIACLLLKRG----- 712 (785)
T ss_pred hhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhh------ccCCCcchhhhhhcccchhhhhcccc-----
Confidence 4555542 2358999999999999999999999999999988 79999999999999999999999999
Q ss_pred cCCccccCccchhHHHHHh
Q 001759 746 SSLTVNENGMDNVAAALAA 764 (1017)
Q Consensus 746 a~l~l~d~~~G~Ta~~ia~ 764 (1017)
++.++.+.. |.++++++.
T Consensus 713 a~~~a~~~~-~~~~l~~a~ 730 (785)
T KOG0521|consen 713 ADPNAFDPD-GKLPLDIAM 730 (785)
T ss_pred ccccccCcc-CcchhhHHh
Confidence 666676777 778777763
No 132
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=96.76 E-value=0.075 Score=69.03 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 851 YLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
....|++.||+.+|.++.+++|..+.+.+|.+|..+|-..|||++..+
T Consensus 840 ~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~ 887 (1463)
T COG5022 840 FSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQEL 887 (1463)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888888888888888877666
No 133
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.43 E-value=0.12 Score=70.05 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=69.4
Q ss_pred hhhhhhchHHHH--HhHHHHHHHHHHHHHHhhhhhhhcccC-----CchhHHHHHHHH-hccccccccchh---h-----
Q 001759 785 QLSLRGSLAAVR--KSAHAAALIQQAFRVRSFRHRQSIQSS-----DDVSEVSVDLVA-LGSLNKVSKMIH---F----- 848 (1017)
Q Consensus 785 ~lslkdsL~AVR--~A~~AA~rIQ~afR~~s~Rkr~L~~~~-----~~~~e~~~sila-~q~~~r~~~~~~---~----- 848 (1017)
+|-..+-|.++| ..++|.++.+.-|| .||..+.... .+....|..++. +......+..+. |
T Consensus 684 QLrcngVLEgIRicR~GfPnr~~~~eFr---qRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGv 760 (1930)
T KOG0161|consen 684 QLRCNGVLEGIRICRQGFPNRMPFQEFR---QRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGV 760 (1930)
T ss_pred HhhccCcHHHHHHHHhhCccccchHHHH---HhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHH
Confidence 344456677775 46889999999999 8888332211 222444444443 211000111111 1
Q ss_pred --------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 001759 849 --------EDYLHFAAIKIQQKYRGWKGRKDFLKIRN---HIVKLQAHVRGHQVRKQY 895 (1017)
Q Consensus 849 --------~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~---~aV~IQa~~Rg~qaRK~y 895 (1017)
+.....--+.+|..+|||.+|+.|.+.+. ++.+||..+|.+...|.+
T Consensus 761 la~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 761 LAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 22466677889999999999999987654 588999999999887754
No 134
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.14 E-value=0.0057 Score=43.33 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001759 876 RNHIVKLQAHVRGHQVRKQYK 896 (1017)
Q Consensus 876 R~~aV~IQa~~Rg~qaRK~yk 896 (1017)
.+++++||+.|||+.+|++|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 456777777777777777763
No 135
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=96.10 E-value=0.024 Score=53.76 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=66.4
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCC-------eecceeee----eCCeEEeecCC-CC-----
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGE-------IEVPAEVL----TDNVIRCQAPS-HA----- 502 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd-------~~vpae~~----~~gvLrC~~Pp-h~----- 502 (1017)
.|..++-.-++..||-+|.++|.++. ....-|.|++ .+.-+.+- ....|+|.+|| |.
T Consensus 2 ~I~r~s~~s~~~~GG~ev~Ll~~k~~------k~dikV~F~e~~~g~~~WE~~~~f~~~dv~q~aiv~~tP~y~~~~i~~ 75 (101)
T cd00602 2 PICRVSSLSGSVNGGDEVFLLCDKVN------KPDIKVWFGEKGPGETVWEAEAMFRQEDVRQVAIVFKTPPYHNKWITR 75 (101)
T ss_pred ceEEEeCCeeEcCCCcEEEEEecCCC------CCCCEEEEEecCCCCCeEEEEEEECHHHceEeEEEecCCCcCCCCccc
Confidence 58899999999999999999999882 3478999999 56666654 44569999998 44
Q ss_pred CceeeEEEecCCCcccCcceeeeee
Q 001759 503 AGRVPFYITGSNRLACSEVREFEYR 527 (1017)
Q Consensus 503 pG~Vp~~Vt~~n~~~cSEv~~FEyr 527 (1017)
|=.|+|++.-.+...+|+...|+|.
T Consensus 76 pV~V~i~L~r~~~~~~S~~~~FtY~ 100 (101)
T cd00602 76 PVQVPIQLVRPDDRKRSEPLTFTYT 100 (101)
T ss_pred cEEEEEEEEeCCCCeecCCcCeEEc
Confidence 5577888877767788999999995
No 136
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.99 E-value=0.0076 Score=42.69 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 001759 852 LHFAAIKIQQKYRGWKGRKDFL 873 (1017)
Q Consensus 852 ~~~AAv~IQk~~Rg~~~Rk~fl 873 (1017)
...||+.||+.||||++|++|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4579999999999999999984
No 137
>KOG3610 consensus Plexins (functional semaphorin receptors) [Signal transduction mechanisms]
Probab=95.91 E-value=0.019 Score=73.09 Aligned_cols=95 Identities=21% Similarity=0.185 Sum_probs=77.0
Q ss_pred cCcCCceEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe-ecceeeeeCCe-EEeecCC-CCCceeeEE
Q 001759 433 LSQEQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-EVPAEVLTDNV-IRCQAPS-HAAGRVPFY 509 (1017)
Q Consensus 433 ~~~~q~f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~-~vpae~~~~gv-LrC~~Pp-h~pG~Vp~~ 509 (1017)
...-|-+.|.++.|.|||+.|||+|+++|+.+.. .+...|++|+. +-+....+++. |+|..|+ -.++..|+.
T Consensus 137 ~~s~~~~~~~~~~P~~Gp~~ggt~v~~~Gs~l~~-----gs~~~~vv~~~~~c~~~~~~~~~~~~c~t~~~~~~~~~~~~ 211 (1025)
T KOG3610|consen 137 GSSLQGPCFLSAEPVNGPASGGTQVHCTGSPLDT-----GSCPDCVVSGLGPCVISVVQDSAVIFCVTSSQGAGSEAPVL 211 (1025)
T ss_pred ceeecceeEEeeccCcCCCCCCcceEEecccccc-----CCCceEEecCCccceeEeecCceEEEEecCCCCCCCccceE
Confidence 4456778999999999999999999999999854 47899999999 88888889986 9999999 446889999
Q ss_pred EecCCCcccCcceeeeeecCCCC
Q 001759 510 ITGSNRLACSEVREFEYREKPSK 532 (1017)
Q Consensus 510 Vt~~n~~~cSEv~~FEyr~~~~~ 532 (1017)
|..+....-....-|+|...+.-
T Consensus 212 v~f~~~~~~~~~~~f~y~~dps~ 234 (1025)
T KOG3610|consen 212 VSFDRTPQKLTPLAFNYTADPSY 234 (1025)
T ss_pred EEecccccccCCCCcccccCCcc
Confidence 98876554333567888765443
No 138
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=95.83 E-value=0.04 Score=66.38 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=68.9
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhcc-----cCCchhHHHHHHHHhccccccccchhh--------------------
Q 001759 794 AVRKSAHAAALIQQAFRVRSFRHRQSIQ-----SSDDVSEVSVDLVALGSLNKVSKMIHF-------------------- 848 (1017)
Q Consensus 794 AVR~A~~AA~rIQ~afR~~s~Rkr~L~~-----~~~~~~e~~~sila~q~~~r~~~~~~~-------------------- 848 (1017)
.||.|+.|-++.+..|. .|+..|.. +..|..+.|..|+.- .. ....+|
T Consensus 617 RvRRAGfAYRr~F~kF~---qRyailsp~t~~twqGD~~~av~~il~~-~~---m~~~qyQmG~tkVFiKnPEsLF~LEe 689 (1106)
T KOG0162|consen 617 RVRRAGFAYRRAFDKFA---QRYAILSPQTWPTWQGDEKQAVEHILRD-VN---MPSDQYQMGVTKVFIKNPESLFLLEE 689 (1106)
T ss_pred eehhhhhHHHHHHHHHH---HHheecCcccccccccchHHHHHHHHHh-cC---CChhHhhccceeEEecChHHHHHHHH
Confidence 35899999999999888 77776643 446667778777742 11 111111
Q ss_pred --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 849 --EDYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 849 --~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
+++-+--|.+||++||.|.+||+|.++|..+.++ .-|...||+|--.
T Consensus 690 mRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l---l~gKKeRRr~Si~ 738 (1106)
T KOG0162|consen 690 MRERKWDGMARRIQKAWRRFVARRKYEKMREEATKL---LLGKKERRRYSIN 738 (1106)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHH
Confidence 3345678999999999999999999999988764 4578888887443
No 139
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.66 E-value=0.016 Score=39.23 Aligned_cols=27 Identities=44% Similarity=0.534 Sum_probs=16.1
Q ss_pred CCchhhHHHhcCCHHHHHHHHHcCCCC
Q 001759 678 GRTALHWASYFGREETVIMLVKLGAAP 704 (1017)
Q Consensus 678 G~TPLH~Aa~~G~~eiV~~LL~~GAdv 704 (1017)
|.||||+|+..|+.++++.|+..|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 456666666666666666666655544
No 140
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.53 E-value=0.025 Score=65.79 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=40.4
Q ss_pred hhHHHHHhCCCCCCc------cCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001759 659 WAMRPIIATGVSPNF------RDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLAS 725 (1017)
Q Consensus 659 ~iV~~LL~~Gadvn~------~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa 725 (1017)
..|++|.+++++.|+ .+..--|+||+|+..|..++|.+||+.|+|+.+.| ..|.||.+++.
T Consensus 405 ~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd------~~Grtpy~ls~ 471 (591)
T KOG2505|consen 405 DSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKD------GAGRTPYSLSA 471 (591)
T ss_pred hHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcc------cCCCCcccccc
Confidence 345555555555543 23335577777777777777777777777766665 67777777777
No 141
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=95.18 E-value=0.079 Score=48.51 Aligned_cols=66 Identities=15% Similarity=0.319 Sum_probs=54.8
Q ss_pred eEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCC-----------CCCceeeEEEecCCCcccCccee
Q 001759 455 TKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-----------HAAGRVPFYITGSNRLACSEVRE 523 (1017)
Q Consensus 455 tkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-----------h~pG~Vp~~Vt~~n~~~cSEv~~ 523 (1017)
.-+-++|.+| .+++.+-||++++-|-+-.+-.|.|.+|+ ..|..||+.+.-.++.+=+--..
T Consensus 20 amlEl~GenF-------~pnLkVWFG~veaeTmyR~~e~l~CvvPdis~f~~~w~~~~~p~~VPisLVR~DGvIY~T~lt 92 (97)
T cd01176 20 AMLELHGENF-------TPNLKVWFGDVEAETMYRCEESLLCVVPDISAFREEWRWVRQPVQVPISLVRNDGIIYPTGLT 92 (97)
T ss_pred EEEEEecCcC-------CCCceEEECCcceEEEEEccceeEEecCCHHHhccCceEecCceEeeEEEEecCCeEecCCce
Confidence 6678999999 66899999999999989999999999995 35788898887767776666667
Q ss_pred eeee
Q 001759 524 FEYR 527 (1017)
Q Consensus 524 FEyr 527 (1017)
|+|.
T Consensus 93 FtYt 96 (97)
T cd01176 93 FTYT 96 (97)
T ss_pred EEec
Confidence 7774
No 142
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.99 E-value=0.033 Score=64.89 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCCCCCcCCccccCccchhHHHHHhHHHHH
Q 001759 691 EETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAEKANE 769 (1017)
Q Consensus 691 ~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~~~~a~l~l~d~~~G~Ta~~ia~~~~v~ 769 (1017)
...+.+|.+++++.|..-.|...+..--|+||+|+..|...+|.+||+.| +|+.++|.. |+||.+++..+.|+
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-----~Dp~~kd~~-Grtpy~ls~nkdVk 476 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-----CDPSTKDGA-GRTPYSLSANKDVK 476 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-----CCchhcccC-CCCcccccccHHHH
Confidence 56789999999988877666666677889999999999999999999999 888899998 99999887655443
No 143
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=94.95 E-value=0.077 Score=50.06 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=59.7
Q ss_pred eEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe--------eccee----eeeCCeEEeecCC-CC---
Q 001759 439 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI--------EVPAE----VLTDNVIRCQAPS-HA--- 502 (1017)
Q Consensus 439 f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~--------~vpae----~~~~gvLrC~~Pp-h~--- 502 (1017)
..|.+.|-.-++.+||-+|.++|.++.- ...|.|-+. +.-++ .+....|+|.+|| |.
T Consensus 2 p~I~r~s~~s~sv~GG~Ev~Ll~~k~~k-------DikV~F~E~~~dG~~~WE~~a~f~~~~~hQ~aIvf~tPpY~~~~I 74 (101)
T cd01178 2 PEIEKKSLNSCSVNGGEELFLTGKNFLK-------DSKVVFQEKGQDGEAQWEAEATIDKEKSHQNHLVVEVPPYHNKHV 74 (101)
T ss_pred CeeEEeccCceeecCCCEEEEEehhcCC-------CCEEEEEEeCCCCccceEEEEEeChHhceeeeEEEecCCCCCCCc
Confidence 5799999999999999999999998822 356666531 33333 3455679999998 43
Q ss_pred --CceeeEEEecCCCcccCcceeeeee
Q 001759 503 --AGRVPFYITGSNRLACSEVREFEYR 527 (1017)
Q Consensus 503 --pG~Vp~~Vt~~n~~~cSEv~~FEyr 527 (1017)
|=.|-|++..+ ...+|+...|+|.
T Consensus 75 ~~pV~V~~~l~~~-~~~~S~~~~FtY~ 100 (101)
T cd01178 75 AAPVQVQFYVVNG-KRKRSQPQTFTYT 100 (101)
T ss_pred CCceEEEEEEEcC-CCCcCCCCCcEec
Confidence 56677777644 3467999999995
No 144
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=94.91 E-value=0.037 Score=37.38 Aligned_cols=29 Identities=28% Similarity=0.380 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHcCChhhHHHHHhCCCCCC
Q 001759 644 GGQGVVHLAAALGYEWAMRPIIATGVSPN 672 (1017)
Q Consensus 644 ~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn 672 (1017)
.|.||||+|+..|+.++++.|+..|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 47899999999999999999999998775
No 145
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.52 E-value=0.083 Score=65.42 Aligned_cols=117 Identities=21% Similarity=0.048 Sum_probs=89.1
Q ss_pred cHHHHHHHcCChhhHHHHHhC----CCCCCccCCCCCchhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHH
Q 001759 647 GVVHLAAALGYEWAMRPIIAT----GVSPNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAAD 722 (1017)
Q Consensus 647 TpLH~Aa~~G~~~iV~~LL~~----Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLh 722 (1017)
--...|+..|+...|+..++. ..++|++|.-|+++|++|..+.+.+++++|++++..+ ..+|-
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------------gdALL 93 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------------GDALL 93 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------------chHHH
Confidence 345678999999999988864 2678999999999999999999999999999886554 34899
Q ss_pred HHHhcCcHHHHHHHHHccCCCCCcCC----ccccCccchh----HHHHHhHHHHHHHHHcCC
Q 001759 723 LASSRGHKGIAGYLAEADLSSHLSSL----TVNENGMDNV----AAALAAEKANETAAQIGV 776 (1017)
Q Consensus 723 lAa~~G~~~iv~~LLe~Ga~~~~a~l----~l~d~~~G~T----a~~ia~~~~v~~L~e~~a 776 (1017)
+|+..|..++|++|+.+-........ +...-.++-| |++..+-++++.|+.+++
T Consensus 94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~ 155 (822)
T KOG3609|consen 94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH 155 (822)
T ss_pred HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence 99999999999999986432211111 1111111445 556667799999999998
No 146
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=93.76 E-value=0.25 Score=46.67 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=57.9
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCe-------ecceee-----eeCCeEEeecCC-CC----
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEI-------EVPAEV-----LTDNVIRCQAPS-HA---- 502 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~-------~vpae~-----~~~gvLrC~~Pp-h~---- 502 (1017)
.|.+++=.-|++.||.+|.+++..+. +....|.|-+. +.-++| -..-.++|.+|| |.
T Consensus 2 ~I~r~s~~sgsv~GG~Ev~LLcdKV~------K~dI~VrF~e~~~~~~~We~~g~f~~~dVH~Q~AIvfkTPpY~~~~I~ 75 (102)
T cd01177 2 KICRLDKTSGSVKGGDEVYLLCDKVQ------KEDIQVRFFEEDEEETVWEAFGDFSQTDVHRQYAIVFRTPPYHDPDIT 75 (102)
T ss_pred EEEEecCcccccCCCcEEEEEecccC------CCCCEEEEEEcCCCCCceEEEeeECHHHcccceEEEEeCCCCCCCcCC
Confidence 69999999999999999999999873 34566666542 222323 233449999998 55
Q ss_pred -CceeeEEEecCCCcccCcceeeeee
Q 001759 503 -AGRVPFYITGSNRLACSEVREFEYR 527 (1017)
Q Consensus 503 -pG~Vp~~Vt~~n~~~cSEv~~FEyr 527 (1017)
|=.|-+++.-.....+|+...|+|.
T Consensus 76 ~pV~V~iqL~Rpsd~~~Sep~~F~Y~ 101 (102)
T cd01177 76 EPVKVKIQLKRPSDGERSESVPFTYV 101 (102)
T ss_pred CceEEEEEEEeCCCCCccCCcceEEc
Confidence 3445555554444558999999995
No 147
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=92.51 E-value=0.28 Score=59.77 Aligned_cols=104 Identities=22% Similarity=0.411 Sum_probs=65.3
Q ss_pred CChHHHHHHHHcccccc-----cCCCCCCCCCCCceee-ee--hhhhhhhhccCccceeccCCCchHHHhhhcccCCEe-
Q 001759 27 LRPTEICEILRNYQKFH-----LTPDPPVRPPAGSLFL-FD--RKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSID- 97 (1017)
Q Consensus 27 ~~~~e~~~~l~~~~~~~-----~~~~~~~~p~~g~~~~-~~--~~~~~~~~~dg~~w~~~~~~~~~~e~h~~l~~~~~~- 97 (1017)
|..+++.++|.+-.+.- +.-.=-.+|+-|+||| |- -++.-.|-.|||.|-- -|.--+..|+|..
T Consensus 30 l~~~~~~~~Ll~ap~i~r~~~P~~WtylD~P~DGtv~L~wqp~~~lg~~fasDGy~wad-------~E~~y~~~~~G~~l 102 (669)
T PF08549_consen 30 LPPETVVEYLLKAPQIARDTAPFFWTYLDKPPDGTVLLTWQPLNRLGTNFASDGYVWAD-------PEQAYTHEVNGYTL 102 (669)
T ss_pred CCHHHHHHHHHhchhhhccCCCeEeecccCCCCCcEEEEecCchhcCCcCCCCcceecC-------hhheeeecCCCeEE
Confidence 34456666665443211 1111236789999999 73 3456789999999974 1444444554443
Q ss_pred -eE---EEEecccccCccccceeeeeccCCC---------ccEEEEeeecccc
Q 001759 98 -VL---HCYYAHGEDNENFQRRSYWMLDGQL---------EHIVLVHYREVKE 137 (1017)
Q Consensus 98 -~~---~~~y~~~~~~~~f~rr~y~~~~~~~---------~~~v~vhy~~~~~ 137 (1017)
+. ++|+-=+|..-..-||.|-|+-... +..+||||..-..
T Consensus 103 Ei~~~k~G~~p~~e~~a~h~RrRyRL~~~~~p~pn~P~~DpsLwiVHY~~a~~ 155 (669)
T PF08549_consen 103 EIYEHKSGYHPPGEQYASHSRRRYRLVPGKVPNPNAPPPDPSLWIVHYGPAPP 155 (669)
T ss_pred EEEEeecCcCCCCCchhheeeeeeEecCCCCCCCCCCCCCCcEEEEEecCCCc
Confidence 21 2244436777789999999995433 5689999987553
No 148
>PTZ00014 myosin-A; Provisional
Probab=91.70 E-value=0.38 Score=61.38 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001759 877 NHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRG 916 (1017)
Q Consensus 877 ~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwrrkr 916 (1017)
..+++||++|||+++||+|+++..++..+|+.+++|...+
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999887553
No 149
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.28 E-value=3.4 Score=56.86 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=43.0
Q ss_pred HHHHHHHHhccccccccchh-h--HHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 001759 828 EVSVDLVALGSLNKVSKMIH-F--EDYLHFAAIKIQQKYRGWKGRKDFLKIRN---HIVKLQAHVRGHQVRK 893 (1017)
Q Consensus 828 e~~~sila~q~~~r~~~~~~-~--~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~---~aV~IQa~~Rg~qaRK 893 (1017)
.....|+.+|+.+||+.+++ | +..+..|...||+.+|-|...|.|.-.|- ---.||+.-+-.+.++
T Consensus 771 ~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~ 842 (1930)
T KOG0161|consen 771 KLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRA 842 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34555556678888988887 4 33577899999999999988877554432 2233444444444444
No 150
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=90.34 E-value=8.4 Score=47.61 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001759 878 HIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 878 ~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
+++++|+..|||++||+++..
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchH
Confidence 467788888888888887666
No 151
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=89.90 E-value=1.2 Score=54.31 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCchhHHHHHHHHhccccccccchhhHH-HHHHHHHHHHHHHHhHHHHHHHHH---
Q 001759 799 AHAAALIQQAFRVRSFRHRQSIQSSDDVSEVSVDLVALGSLNKVSKMIHFED-YLHFAAIKIQQKYRGWKGRKDFLK--- 874 (1017)
Q Consensus 799 ~~AA~rIQ~afR~~s~Rkr~L~~~~~~~~e~~~sila~q~~~r~~~~~~~~~-~~~~AAv~IQk~~Rg~~~Rk~fl~--- 874 (1017)
..-+..+|+++|++..|.++... ..+.+-++ . |+. +...++..||+.||||+.|+.|.+
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rm--------ka~~~ii~-w--------yR~~K~ks~v~el~~~~rg~k~~r~ygk~~~ 758 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRM--------KASATIIR-W--------YRRYKLKSYVQELQRRFRGAKQMRDYGKSIR 758 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-H--------HHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Confidence 34567899999999999888332 22222221 1 333 455667778888888888887753
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 875 -------IRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 875 -------~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
+|+..-.+|..+-.|.+++-.+.+
T Consensus 759 WP~pP~~Lr~~~~~L~~lf~rwra~~~~~~i 789 (1001)
T KOG0164|consen 759 WPAPPLVLREFEELLRELFIRWRAWQILKSI 789 (1001)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555556655555555444444
No 152
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.93 E-value=6.3 Score=48.62 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001759 851 YLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKL 882 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~I 882 (1017)
.+..+.+.+|+..|||.+||+|...-.-+.+|
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 46678899999999999999987655444443
No 153
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=87.87 E-value=4.4 Score=53.27 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 854 FAAIKIQQKYRGWK----GRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 854 ~AAv~IQk~~Rg~~----~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
-.-..||..+||++ ....+......+|++|+..||+++||.|...
T Consensus 566 P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~ 614 (1401)
T KOG2128|consen 566 PFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRK 614 (1401)
T ss_pred chHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 34556666666665 2233344445566666666666666666444
No 154
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.08 E-value=1.4 Score=48.43 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHH--------------HHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 948 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKF--------------ENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~--------------~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
.+++..+++++..|++... .+.++|-|+-||+++. ++|+.++..++..++.+|+.|...-.-||.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 4456667777788888777 7888899999998653 567777888888888888888887777777
Q ss_pred hhhc
Q 001759 1013 YVAD 1016 (1017)
Q Consensus 1013 ~~~~ 1016 (1017)
|..|
T Consensus 150 YFvD 153 (305)
T PF15290_consen 150 YFVD 153 (305)
T ss_pred HHhh
Confidence 7655
No 155
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=86.53 E-value=0.83 Score=55.17 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=91.4
Q ss_pred ceEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCCCCCceeeEEEecCCCcc
Q 001759 438 LFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNRLA 517 (1017)
Q Consensus 438 ~f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pph~pG~Vp~~Vt~~n~~~ 517 (1017)
..-|..|+|.-+..-+|+.|.|+|-++ ..++.|.||++ |+.-.+.+|...-..+...
T Consensus 322 ~~~i~~yvp~t~~q~~~~al~ivg~n~-------~~~l~~a~~~~----------------~~s~~~~~~~~~~n~~~~s 378 (605)
T KOG3836|consen 322 TKAIFTYVPSTDRQLIEYALQIVGLNM-------NGKLEDARNIA----------------NSSLSPTSPMMNNNSEQLS 378 (605)
T ss_pred cccceeeecCCCceeeeeEEEEecccc-------cCchhhhcCCc----------------cccCCCCCcceeccccccC
Confidence 357999999999999999999999998 55899999998 3322455565554433332
Q ss_pred cCcceeeeeecCCCCCCCCccccCCCchHHHHHHHHHHhhccCCCcccccccccchhhhhhHHHHhhcccCCCCcccccc
Q 001759 518 CSEVREFEYREKPSKAGYPVASKIAPEDEVRLQTRLAKFLYLDPERKWFDCTIEDCNKCKLKNTIYSMRGDSEKDWGRVD 597 (1017)
Q Consensus 518 cSEv~~FEyr~~~~~~~~~~~~~~~~~~e~~Lq~Rl~~LL~~~~~~~~~~~~~~~~ek~~l~~~i~~l~~~~~~~w~~l~ 597 (1017)
+....+.+...... ... +.+ +.+. ..+ ..|..+
T Consensus 379 -~~aI~~~~~~~~~s-~~~----------lSl-----------------------~~~~------~~~-----~~~ss~- 411 (605)
T KOG3836|consen 379 -PYAIMSQKPTNNLS-TVN----------LSL-----------------------CDVR------AAL-----NNSSSL- 411 (605)
T ss_pred -ccceeeecCCCCCC-ccc----------eee-----------------------ehhh------hhh-----cCCccc-
Confidence 44445555443222 100 000 0000 000 111111
Q ss_pred ccccccccCCCchHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhCCCCCCccCCC
Q 001759 598 ESPMAIEGDCPNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDAR 677 (1017)
Q Consensus 598 e~l~~~~~~~~~~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~ 677 (1017)
+..+++.|+.++..|..|.+|+|+++..|...+++.++....+++..-..
T Consensus 412 ------------------------------v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~~~~~~ 461 (605)
T KOG3836|consen 412 ------------------------------VFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAISLKSVN 461 (605)
T ss_pred ------------------------------eeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhhccccc
Confidence 11234456778888999999999999999999999988877666665555
Q ss_pred CCch
Q 001759 678 GRTA 681 (1017)
Q Consensus 678 G~TP 681 (1017)
|.++
T Consensus 462 ~~~~ 465 (605)
T KOG3836|consen 462 GMIA 465 (605)
T ss_pred cccc
Confidence 5544
No 156
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=86.04 E-value=8.6 Score=50.78 Aligned_cols=51 Identities=29% Similarity=0.430 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 001759 848 FEDYLHFAAIKIQQKYRGWKGRKDFLKIR-------NHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 848 ~~~~~~~AAv~IQk~~Rg~~~Rk~fl~~R-------~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
|..-...-++.+|+..||+.+|+.|.... .++|+||+.+|+.++|+.|+.+
T Consensus 587 ~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 587 YLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHH
Confidence 33445567899999999999999987654 4589999999999999999998
No 157
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.25 E-value=19 Score=35.50 Aligned_cols=73 Identities=8% Similarity=0.033 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---Hhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 942 EFLRIGRKQKFAGVEKALERV---KSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 942 d~L~~~rkq~e~~~~~A~~rV---qs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
..|...|..+...+-+..... ++.. +...+++++..+...+..+-..+..-..++++|+.-|..+|+-.+.-|
T Consensus 40 ~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 40 ARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666655554544444 3333 667778888888888777888888888899999999998888766544
No 158
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.09 E-value=10 Score=41.27 Aligned_cols=68 Identities=15% Similarity=0.023 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 942 EFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 942 d~L~~~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
..|.....|++.+...+..++|.| +-+..++++.++...++.++-.+.+++--++..+.|++|+.|+.
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl------~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRL------TTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777766 56667777777777777788888888888888999999998874
No 159
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.77 E-value=11 Score=33.98 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 948 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
..++|.+++.|+..|.-+- ...+++.+-..+..+.+.++..-+.+..++..|+.+-..=++-|.+++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888774 555555555555555555555555566666666666666666665554
No 160
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.39 E-value=27 Score=44.26 Aligned_cols=31 Identities=13% Similarity=-0.095 Sum_probs=22.4
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 985 ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
||-+++-.+..+..-..||.+||.+|..++|
T Consensus 627 akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 627 AKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666677778888887777765
No 161
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.25 E-value=12 Score=32.79 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 948 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
..+++.+++.|+..|+-+. ...++++.-..+..+...++...+.++.+++.||++-..-++.|.++.
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888775 555565555555555566666677777788888887777777777664
No 162
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.10 E-value=3 Score=51.36 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001759 848 FEDYLHFAAIKIQQKYRGWKGRKDFLK 874 (1017)
Q Consensus 848 ~~~~~~~AAv~IQk~~Rg~~~Rk~fl~ 874 (1017)
|.+++++||+.||+.+|||.+||+|..
T Consensus 25 ~qrrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 25 YQRRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999998754
No 163
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.71 E-value=13 Score=33.16 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 948 RKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
..+++.+++.|+.+|..+ +.+..+++++-.+.+.....+..++..|+.+-..-++.|.+++
T Consensus 6 l~~LE~ki~~aveti~~L------q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALL------QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777776665 5566666655555554455555555555555555555555544
No 164
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.55 E-value=56 Score=41.01 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 943 FLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 943 ~L~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
++++.++|++.+++..--++|.+. |....|-.+-..+++++......+...+++.+|+.+|+++++.|..
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666655555555554 3333343444444444443333344444444444444444444443
No 165
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.25 E-value=5.6 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 001759 851 YLHFAAIKIQQKYRGWKGRKDFL 873 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~fl 873 (1017)
++.++|+.||+.||||.+|++++
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443
No 166
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.85 E-value=82 Score=39.64 Aligned_cols=30 Identities=7% Similarity=-0.228 Sum_probs=21.2
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 985 ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
+|.+++......+-+.+++..|+.+|+.+-
T Consensus 470 ~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 470 QKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 555566666777777777888888887653
No 167
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=72.49 E-value=9.7 Score=41.15 Aligned_cols=121 Identities=11% Similarity=0.070 Sum_probs=79.7
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhHHHHHhCCCCCCccCC----CCCchhh
Q 001759 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDD-GGQGVVHLAAALGYEWAMRPIIATGVSPNFRDA----RGRTALH 683 (1017)
Q Consensus 609 ~~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~-~G~TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~----~G~TPLH 683 (1017)
..++..|+.+++....+.+-.++ +|+ .-.++|-+|..++..+++-+|+.. .+....|. .+.--+-
T Consensus 151 ~lr~isledAV~AsN~~~i~~~V---------tdKkdA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydie 220 (284)
T PF06128_consen 151 KLRDISLEDAVKASNYEEISNLV---------TDKKDAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIE 220 (284)
T ss_pred ccccccHHHHHhhcCHHHHHHHh---------cchHHHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHH
Confidence 44566677777777666654432 222 235788888888888898888864 22222221 1222344
Q ss_pred HHHh--cCCHHHHHHHHHcCC-CCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHccCC
Q 001759 684 WASY--FGREETVIMLVKLGA-APGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLS 742 (1017)
Q Consensus 684 ~Aa~--~G~~eiV~~LL~~GA-dvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~Ga~ 742 (1017)
++.. .....+++..|..|- ++|..- .+-..|.|-|+-|...++.+++.+|+++|+.
T Consensus 221 Y~LS~h~a~~kvL~~Fi~~Glv~vN~~F---~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 221 YLLSEHSASYKVLEYFINRGLVDVNKKF---QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HHHhhcCCcHHHHHHHHhccccccchhh---hccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 4433 346778888888883 555432 1225899999999999999999999999963
No 168
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.32 E-value=4.5 Score=32.79 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 971 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 971 AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
..++|..++..+...++..+.+..+++.|+.++..|+..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566677777777777777778888888888888888765
No 169
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.12 E-value=65 Score=37.06 Aligned_cols=45 Identities=7% Similarity=-0.109 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 969 PEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
..+|.++..+..+++.-|..+..++.++..++..++.++++++.+
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555555555555444444
No 170
>KOG3610 consensus Plexins (functional semaphorin receptors) [Signal transduction mechanisms]
Probab=69.01 E-value=5.3 Score=51.82 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCceEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCC--eecceeeeeCCeEEeecCCCC--CceeeEEEe
Q 001759 436 EQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGE--IEVPAEVLTDNVIRCQAPSHA--AGRVPFYIT 511 (1017)
Q Consensus 436 ~q~f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd--~~vpae~~~~gvLrC~~Pph~--pG~Vp~~Vt 511 (1017)
-+.++|++|+|.-++..|||.++|.|.++...-+.-..+. ++=|- ..++.+..--..+.|..-++. ||.|.+.|-
T Consensus 47 c~~P~i~~~~P~~g~~eggt~iti~g~nlg~~~~dv~~~v-~Va~v~c~~~~~~y~~~~~i~C~~~~~~~~~g~v~~~v~ 125 (1025)
T KOG3610|consen 47 CPLPSITALSPLNGPIEGGTNISIVGTNLGNSLNDVSDGV-KVAGVRCSPVAEEYDCSPCIACSPGANGSWPGPINVAVG 125 (1025)
T ss_pred cCCCcccceeeccccccCCceeeeeeeehhhhhhhccCCc-eEeeeecCCCccccccccceeeccCCCCCCCCceeEEec
Confidence 4466799999999999999999999999965322111121 22222 144556666667899888876 688888876
No 171
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.48 E-value=57 Score=37.39 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=5.0
Q ss_pred HHHHHHHHcc
Q 001759 731 GIAGYLAEAD 740 (1017)
Q Consensus 731 ~iv~~LLe~G 740 (1017)
.+-.||-.-|
T Consensus 11 sL~dFL~~t~ 20 (312)
T smart00787 11 SLQDFLNMTG 20 (312)
T ss_pred cHHHHHHHcC
Confidence 3445555544
No 172
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.77 E-value=44 Score=43.18 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 948 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
.+.++..++.+..+++.-- +....+.+|.++..+.++.+.++..++.+...+..++..++.++-++-
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777766 678888889999888877666666666666666666666666655443
No 173
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=65.05 E-value=37 Score=38.38 Aligned_cols=62 Identities=8% Similarity=0.088 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhh--hcHHHHHHHHHHHHHH------HHhhhh-hhccCcchHHH-HhhhHhHHHHHHHhhhc
Q 001759 955 VEKALERVKSMV--RNPEARDQYMRMVAKF------ENFKMC-DDGSGLLSQGE-DSLNGPTKDNLHAYVAD 1016 (1017)
Q Consensus 955 ~~~A~~rVqs~~--r~~~AR~qyrrl~~e~------~~ak~~-~~~~~~~~~~L-k~el~~lk~~l~~~~~~ 1016 (1017)
+..+...+++.. |--.+..|+.+.++|. ++.|++ |..+...-..| ..||.+|+++|+-||.+
T Consensus 187 ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~ 258 (302)
T PF07139_consen 187 IKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSE 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Confidence 333444444433 6666666767666443 334443 44443333333 35789999999999986
No 174
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.43 E-value=55 Score=39.91 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccHHHHHHHH
Q 001759 868 GRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASENEKTDEYEFLRIG 947 (1017)
Q Consensus 868 ~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwrrkr~~Lr~~~~e~~~~~~~~~~~~~~~~d~L~~~ 947 (1017)
-|+.+..++..+.+.|+++-++..+++-..- .+..+..-|. +.+.+.+.|+..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~--~l~~l~~Eie-------------------------~kEeE~e~lq~~ 316 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEK--KLEMLKSEIE-------------------------EKEEEIEKLQKE 316 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHH-------------------------HHHHHHHHHHHH
Confidence 4666777788889999999888877754211 1111111111 112233334333
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 948 RKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
...+. ..++.| ..--.++++|..|.++.+..+.+.+.+++.|.+++..++.+++++.
T Consensus 317 ~d~Lk-----~~Ie~Q-----~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f 373 (581)
T KOG0995|consen 317 NDELK-----KQIELQ-----GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFF 373 (581)
T ss_pred HHHHH-----HHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33322 222222 1233456777777677777777777777777777777776666653
No 175
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.23 E-value=24 Score=37.85 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=27.9
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
.+...++.|..+++++++.+++.+.+..++++|..++..+++.|+.
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555555555666655555555554
No 176
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=64.09 E-value=79 Score=41.41 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 868 GRKDFLKIRNHIVKLQAHVRGHQV 891 (1017)
Q Consensus 868 ~Rk~fl~~R~~aV~IQa~~Rg~qa 891 (1017)
..+++.+....+.++|-.+--.+.
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ 302 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQE 302 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777665554443
No 177
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.36 E-value=2.4e+02 Score=33.07 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhc------cCcchHHHHhhhHhHHHHHHH
Q 001759 939 DEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDG------SGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~~~------~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
.+|...++...+.+.+++.+-..|..+. +++.++.+++++.|.+.+. +.+-+...|+-|..||.+|+.
T Consensus 273 ~eYr~~~~~ls~~~~~y~~~s~~V~~~t------~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 273 QEYRSAQDELSEVQEKYKQASEGVSERT------RELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777777777777774 4444444444444433222 334555666666666666653
No 178
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.14 E-value=96 Score=39.64 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHH
Q 001759 848 FEDYLHFAAIKIQQKYRGWKGRKD 871 (1017)
Q Consensus 848 ~~~~~~~AAv~IQk~~Rg~~~Rk~ 871 (1017)
|-.+.+.|...||++.+--+.-++
T Consensus 552 Yi~~~~~ar~ei~~rv~~Lk~~~e 575 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVKLLKQQKE 575 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577788888887776655444
No 179
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=62.39 E-value=8.7 Score=29.44 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 001759 854 FAAIKIQQKYRGWKGRKD 871 (1017)
Q Consensus 854 ~AAv~IQk~~Rg~~~Rk~ 871 (1017)
-||..||-.||.|+.||.
T Consensus 10 YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 489999999999999886
No 180
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.13 E-value=19 Score=44.74 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001759 858 KIQQKYRGWKGRKDFLKIR-NHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 858 ~IQk~~Rg~~~Rk~fl~~R-~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
-||+.-+..-. |.|.+.| ++++.||++||||.+||+|..-
T Consensus 12 fl~k~~qeREe-r~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~ 52 (1096)
T KOG4427|consen 12 FLAKVSQEREE-RSYQRRREAAALFIQRVLRSYLVRKKAQIE 52 (1096)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555443322 3444444 4789999999999999999654
No 181
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=60.56 E-value=4.8e+02 Score=34.94 Aligned_cols=38 Identities=5% Similarity=-0.059 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHH
Q 001759 945 RIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKF 982 (1017)
Q Consensus 945 ~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~ 982 (1017)
++...++++...+|...||... ....+++.+.+..++.
T Consensus 1569 ~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t 1607 (1758)
T KOG0994|consen 1569 VEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEET 1607 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3334444444444544555444 3344444444444433
No 182
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.14 E-value=86 Score=33.83 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 001759 854 FAAIKIQQKYRGWKGRKD 871 (1017)
Q Consensus 854 ~AAv~IQk~~Rg~~~Rk~ 871 (1017)
.-|-+.|...||...+-+
T Consensus 73 eLA~kf~eeLrg~VGhiE 90 (290)
T COG4026 73 ELAEKFFEELRGMVGHIE 90 (290)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 457788888888887755
No 183
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.83 E-value=39 Score=37.25 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=15.9
Q ss_pred HHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 981 KFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 981 e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
++.+.+.+++..+....++.-.+..+-+.|+.||+
T Consensus 85 el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 85 ELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444444445555555554
No 184
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.63 E-value=43 Score=36.35 Aligned_cols=45 Identities=7% Similarity=0.009 Sum_probs=26.2
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
....+.++-++++.+-+..++..+.+-.++.+|.++|+.++++|-
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444555555555555555555555566666666666666665553
No 185
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=59.33 E-value=1e+02 Score=32.55 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhc
Q 001759 902 VSIVEKAILRWRRRGSGLRGFR 923 (1017)
Q Consensus 902 v~~lek~i~rwrrkr~~Lr~~~ 923 (1017)
|..|+.-+..|+++...|...-
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888877776544
No 186
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=58.02 E-value=3.6e+02 Score=36.86 Aligned_cols=42 Identities=5% Similarity=-0.124 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHH
Q 001759 969 PEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l 1010 (1017)
..++.++..++.+.+++...+......+.+++.++.++..+|
T Consensus 493 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 493 EELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444455555555555554444
No 187
>PRK09039 hypothetical protein; Validated
Probab=57.79 E-value=3.1e+02 Score=31.86 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhH
Q 001759 950 QKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPT 1006 (1017)
Q Consensus 950 q~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~l 1006 (1017)
..+..+.++--.|+..- +...+|+|+.++..++..++......+..+++|+.+|..+
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444433333333 3444455555554444444444444444444444443333
No 188
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=56.22 E-value=80 Score=37.65 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 850 DYLHFAAIKIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVE 906 (1017)
Q Consensus 850 ~~~~~AAv~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~le 906 (1017)
+..++||-.+|-.|.-||..|-+.+.- ....||.+++++.|+..+.
T Consensus 361 ~~KnAAA~VLqeTW~i~K~trl~~k~~-----------~~rlR~hQRkfL~AI~~fR 406 (489)
T KOG3684|consen 361 EHKNAAANVLQETWLIYKHTKLVSKGD-----------QARLRKHQRKFLQAIHQFR 406 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc-----------hHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999887763322 2455677777877766543
No 189
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=56.20 E-value=2.5e+02 Score=37.05 Aligned_cols=49 Identities=6% Similarity=-0.115 Sum_probs=35.1
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
....++.++...+.++..-+.+.++.+..+.+++..+..-.++|+++-+
T Consensus 416 ~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 416 QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777666666777777778888877777777776543
No 190
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.99 E-value=1.8e+02 Score=33.46 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001759 894 QYKKVVWSVSIVEKAILRWRRRGSGL 919 (1017)
Q Consensus 894 ~yk~l~~Sv~~lek~i~rwrrkr~~L 919 (1017)
.+..+......+..++-.-+.++..|
T Consensus 164 D~~~L~~~~~~l~~~~~~l~~~~~~L 189 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELLPKLRERKAEL 189 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555544444444443
No 191
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=55.92 E-value=17 Score=39.38 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=40.4
Q ss_pred ChhhHHHHHhCC-CCCCc---cCCCCCchhhHHHhcCCHHHHHHHHHcCCCC
Q 001759 657 YEWAMRPIIATG-VSPNF---RDARGRTALHWASYFGREETVIMLVKLGAAP 704 (1017)
Q Consensus 657 ~~~iV~~LL~~G-advn~---~D~~G~TPLH~Aa~~G~~eiV~~LL~~GAdv 704 (1017)
...+++++|..| ++||. +-..|.|-|.-|..++..+++.+||++||-.
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 567888888888 67775 3456999999999999999999999999853
No 192
>PRK11637 AmiB activator; Provisional
Probab=55.87 E-value=42 Score=40.06 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=30.0
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
+...+.+++..+..++.+.+.+++.++.++.+++.+|..+++.+...+
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666666666677777777776666666544
No 193
>PRK09039 hypothetical protein; Validated
Probab=55.55 E-value=1.3e+02 Score=34.88 Aligned_cols=64 Identities=8% Similarity=0.018 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 952 FAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 952 e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
..++..........- +...+++|+..++..+....+.+...+....+.+.++..++..|++-+|
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433333333332 3444445555554444555555566666666666667777777776654
No 194
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.27 E-value=3.9e+02 Score=34.74 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 940 EYEFLRIGRKQKFAGVEKALERVKSMV-----RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 940 ~~d~L~~~rkq~e~~~~~A~~rVqs~~-----r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
-+.|.+ ..+...+++++++|+...- .+.++.+++.+.+.|+.+.+..-+.+..+++.+...|..||||+.|-
T Consensus 367 s~qfkq--lEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 367 SYQFKQ--LEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred hHHHHH--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555 5566689999999986553 46777888888888877777777777777777777777777777664
No 195
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.97 E-value=46 Score=35.83 Aligned_cols=35 Identities=3% Similarity=-0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHH
Q 001759 976 MRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 976 rrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l 1010 (1017)
..++.+.++.+.++..++++++.|+.++..+++.+
T Consensus 135 ~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 135 NGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555443
No 196
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.93 E-value=49 Score=35.62 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001759 970 EARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 970 ~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el 1003 (1017)
+++++++++++++..++.+.+.++.++++++..+
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666543
No 197
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.76 E-value=3.4e+02 Score=37.53 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=9.7
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 001759 858 KIQQKYRGWKGRKDFLKIR 876 (1017)
Q Consensus 858 ~IQk~~Rg~~~Rk~fl~~R 876 (1017)
.-...|=|..+|++++..|
T Consensus 725 k~~a~~IG~~aR~~~R~~r 743 (1353)
T TIGR02680 725 KPAAEYIGAAARERARLRR 743 (1353)
T ss_pred CcchhHhhHHHHHHHHHHH
Confidence 3344555555555555443
No 198
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.37 E-value=2.3e+02 Score=36.12 Aligned_cols=27 Identities=22% Similarity=0.130 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001759 939 DEYEFLRIGRKQKFAGVEKALERVKSM 965 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqs~ 965 (1017)
+--+.++..++++|.++.+....++..
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~k 564 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQK 564 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777776666655544444
No 199
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=52.92 E-value=55 Score=39.63 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=39.1
Q ss_pred hhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhhc
Q 001759 964 SMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVAD 1016 (1017)
Q Consensus 964 s~~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~~ 1016 (1017)
..++..++.-+..++..+.++.|..+..-+.++..||.++++++.+++.+++.
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 33355556666666666677777777778888888888888888888887764
No 200
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.54 E-value=2.1e+02 Score=30.19 Aligned_cols=33 Identities=6% Similarity=-0.015 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001759 976 MRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 976 rrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
....+|+++.|.++++.+.+.+.||.|.+.+.+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555554443
No 201
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.39 E-value=1.3e+02 Score=33.26 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 001759 905 VEKAILRWRR 914 (1017)
Q Consensus 905 lek~i~rwrr 914 (1017)
.++.+..|..
T Consensus 40 sQ~~id~~~~ 49 (251)
T PF11932_consen 40 SQKRIDQWDD 49 (251)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 202
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=52.08 E-value=63 Score=28.83 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhh--hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 951 KFAGVEKALERVKSMV--RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 951 ~e~~~~~A~~rVqs~~--r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
+|.++..|+.-+|.-+ +...-...|..++..+..++.....+...+..|-.+|..|-++++.+
T Consensus 4 LE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666655 55556667777777777777777788888888888888888888765
No 203
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=51.97 E-value=48 Score=29.42 Aligned_cols=59 Identities=5% Similarity=-0.098 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 949 KQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 949 kq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
..+..++..+..++.... ..++.+..+-..+-..+...-.++.+|+.+++.|+.+|+.+
T Consensus 8 ~~Lr~rLd~~~rk~~~~~------~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHE------IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555443 33334433333333334444456666777777777666654
No 204
>PRK11637 AmiB activator; Provisional
Probab=51.96 E-value=54 Score=39.11 Aligned_cols=41 Identities=2% Similarity=-0.098 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 971 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 971 AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
+.+++..+..++...+.++...+.++..++.+|..++++|.
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444443
No 205
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.73 E-value=59 Score=29.56 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 955 VEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 955 ~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
+++.-.+||..+ -+..++-++..++++-.....+.....+..++|..+...||++.++|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455667788777 67777777776666655555555666666777889999999988876
No 206
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.39 E-value=1.2e+02 Score=33.00 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhh
Q 001759 939 DEYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMC 988 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~ 988 (1017)
++-+-|++..+.....++++...+.++. +.....+||.|+.++....+.+
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3344445445555555666666666665 5666666666666665554443
No 207
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=51.22 E-value=73 Score=29.24 Aligned_cols=64 Identities=27% Similarity=0.287 Sum_probs=41.6
Q ss_pred eEEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCC-eeccee-eeeCCe--EEeecCC-CCCceeeEEEe
Q 001759 439 FSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGE-IEVPAE-VLTDNV--IRCQAPS-HAAGRVPFYIT 511 (1017)
Q Consensus 439 f~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd-~~vpae-~~~~gv--LrC~~Pp-h~pG~Vp~~Vt 511 (1017)
.+|.-++|.---..++++|+|.|.+|.. .++||. ++|..- -..++- ++-.++. -.||.+++.|.
T Consensus 2 p~i~aV~P~~lkaG~~t~vti~Gt~L~~---------~v~l~~Gv~v~~v~~~s~~~v~v~V~~aa~a~~G~~~v~vg 70 (81)
T PF09099_consen 2 PTILAVSPAGLKAGEETTVTIVGTGLAG---------TVDLGPGVEVLKVVSASPDEVVVRVKAAADAAPGIRTVRVG 70 (81)
T ss_dssp SEEEEEESSEEETTCEEEEEEEEES-TT----------EE--TTEEEEEEEEE-STCEEEEEEEECTSSSEEEEEEET
T ss_pred CeEEEECchhccCCCeEEEEEEecCccc---------ceecCCCeEEEEEEEeCCCEEEEEEEEcCCCCCccEEEEec
Confidence 3799999999999999999999999943 366776 444432 234443 3335554 66688877764
No 208
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=50.36 E-value=2.8e+02 Score=37.04 Aligned_cols=9 Identities=0% Similarity=-0.470 Sum_probs=3.2
Q ss_pred chHHHHhhh
Q 001759 995 LSQGEDSLN 1003 (1017)
Q Consensus 995 ~~~~Lk~el 1003 (1017)
.+..++.++
T Consensus 923 ~~~~~~~~~ 931 (1179)
T TIGR02168 923 KLAQLELRL 931 (1179)
T ss_pred HHHHHHHHH
Confidence 333333333
No 209
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=48.95 E-value=66 Score=32.61 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=57.9
Q ss_pred eecCccccCCceEEEEEccCCCCCCCCCCCceEEEeCC----e-ecceeeeeCCeEEeecCCC---CCceeeEEEecCCC
Q 001759 444 FSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGE----I-EVPAEVLTDNVIRCQAPSH---AAGRVPFYITGSNR 515 (1017)
Q Consensus 444 ~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd----~-~vpae~~~~gvLrC~~Pph---~pG~Vp~~Vt~~n~ 515 (1017)
|-|.--.++.. ||.|+=.--. .......|.|-. + .+++.+|-+-|+++.+|.+ -+|.|.+.|.|+|-
T Consensus 3 V~P~rI~cg~~-~vfIiL~~~l----~~~~~~eVef~~~n~~~~~~~~~~~N~yt~~~~aPd~~~~pag~V~v~v~~~g~ 77 (142)
T PF14545_consen 3 VQPSRIRCGQP-EVFIILRDPL----DEEDTVEVEFESNNKPIRRVPAKWENPYTLQFKAPDFCLEPAGSVNVRVYCDGV 77 (142)
T ss_pred ecCceeecCCC-EEEEEEeCCC----CCCCeEEEEEEeCCCeeEeccceEECCEEEEEECchhcCCCCceEEEEEEECCE
Confidence 56888888888 8888765321 123567888865 2 5889999999999999999 99999999999886
Q ss_pred cccCcceeeeee
Q 001759 516 LACSEVREFEYR 527 (1017)
Q Consensus 516 ~~cSEv~~FEyr 527 (1017)
..| .+...|.
T Consensus 78 ~~~--~~~ikyy 87 (142)
T PF14545_consen 78 SLG--TRQIKYY 87 (142)
T ss_pred EEE--EEeEEEE
Confidence 664 3344444
No 210
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.91 E-value=83 Score=36.79 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=31.2
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
.+..+++++...+++++++.........++.++..+|+..|.+++.
T Consensus 274 eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 274 EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666677777777777777777777653
No 211
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=47.77 E-value=26 Score=41.23 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 001759 851 YLHFAAIKIQQKYRGWKGRKDF 872 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~f 872 (1017)
+-.+||+.||+.||+|.+|.+-
T Consensus 15 raikaAilIQkWYRr~~ARle~ 36 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEA 36 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999874
No 212
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.06 E-value=39 Score=29.14 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=24.6
Q ss_pred HHHHHHHHHHH-HHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 969 PEARDQYMRMV-AKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 969 ~~AR~qyrrl~-~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
..|-+.++.-+ ..+.+....+..++.++..|+.++..|+.++.++.
T Consensus 14 R~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 14 REAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333 33344555555666666666666666666665543
No 213
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.88 E-value=1.2e+02 Score=34.76 Aligned_cols=28 Identities=7% Similarity=-0.147 Sum_probs=16.7
Q ss_pred hhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 987 MCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 987 ~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
..+.+.+.-+..|.+.+..|--++.++.
T Consensus 194 ~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 194 SMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666666666666666553
No 214
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.49 E-value=3.1e+02 Score=35.23 Aligned_cols=6 Identities=33% Similarity=0.113 Sum_probs=2.7
Q ss_pred eEEEEe
Q 001759 439 FSIRDF 444 (1017)
Q Consensus 439 f~I~d~ 444 (1017)
|.|.++
T Consensus 288 c~i~~l 293 (717)
T PF10168_consen 288 CSILCL 293 (717)
T ss_pred eeEEEe
Confidence 344444
No 215
>KOG3743 consensus Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5) [Transcription]
Probab=45.92 E-value=26 Score=42.02 Aligned_cols=71 Identities=15% Similarity=0.307 Sum_probs=50.2
Q ss_pred CCceEEEEEccCCCCCCCCCCCceEEEeCCeecceeeeeCCeEEeecCC-----------CCCceeeEEEecCCCcccCc
Q 001759 452 GAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-----------HAAGRVPFYITGSNRLACSE 520 (1017)
Q Consensus 452 ~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-----------h~pG~Vp~~Vt~~n~~~cSE 520 (1017)
..-+-+.+.|.+| ..++.+-||++|++|.+-..-+|.|.+|+ |.|-.||+-.+-..+..-+-
T Consensus 505 gd~amlel~g~nf-------~p~l~vwfg~~e~et~~r~~~sl~c~Vp~vs~f~~~w~~~~~P~~~~islvr~dg~vy~~ 577 (622)
T KOG3743|consen 505 GDVAMLELHGQNF-------VPNLQVWFGDVEAETYYRSGESLQCVVPDVSAFRQEWLWTRGPTFVPISLVRTDGTVYAS 577 (622)
T ss_pred cceeEEEecCCCC-------CCCceeeccccCchhhhcccceEEEEeCChhhcccchhcccCceeeeeeheeccceEEec
Confidence 3456788999999 45799999999999999888899999995 33444555444333333344
Q ss_pred ceeeeeecC
Q 001759 521 VREFEYREK 529 (1017)
Q Consensus 521 v~~FEyr~~ 529 (1017)
.-.|.|...
T Consensus 578 ~~~fty~pe 586 (622)
T KOG3743|consen 578 GLTFTYTPE 586 (622)
T ss_pred cceEEeccc
Confidence 456777544
No 216
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.88 E-value=3.3e+02 Score=37.15 Aligned_cols=57 Identities=9% Similarity=0.169 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhh-hhccCcchHHHHhhhHhHHHHH
Q 001759 954 GVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMC-DDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 954 ~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~-~~~~~~~~~~Lk~el~~lk~~l 1010 (1017)
+++.....+..+. .+.....+|..++.+++.+... .+..+.+..+++.+....+++.
T Consensus 360 ~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 418 (1201)
T PF12128_consen 360 ELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQI 418 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444 4555555566665555432222 3334444444455544444443
No 217
>PF05587 Anth_Ig: Anthrax receptor extracellular domain; InterPro: IPR008400 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to IPR002909 from INTERPRO.; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3N2N_E 1SHT_X 1TZN_o 1SHU_X.
Probab=45.72 E-value=6.9 Score=37.47 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred EEEEeecCccccCCceEEEEEccCCCCCCCCCCCceEEEe--CC--e--ecceeeeeCCeEEeecCC-CCCcee-eEEEe
Q 001759 440 SIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMF--GE--I--EVPAEVLTDNVIRCQAPS-HAAGRV-PFYIT 511 (1017)
Q Consensus 440 ~I~d~sP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~F--Gd--~--~vpae~~~~gvLrC~~Pp-h~pG~V-p~~Vt 511 (1017)
.|..+-|.-.-..+.-.|.|.|..|..... .....|-| .+ + +-|+ .++++.|.|-+|- ++||.+ .+.|+
T Consensus 7 Eil~~ePSsvC~ge~f~Vvv~G~GF~~~~~--~d~ViC~F~~n~t~~~~~KP~-~v~dt~llCPaP~l~~~G~~~~v~VS 83 (105)
T PF05587_consen 7 EILSVEPSSVCVGESFQVVVRGNGFNNARN--VDQVICRFKFNDTKTVDEKPV-SVEDTYLLCPAPVLEEPGQTIFVEVS 83 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEcCCceECCCceEEEEECccccccCC--CCeEEEEEEECCeeEEEeCCc-EEcCCEEECCCccccCCCCEEEEEEE
Confidence 588889999999999999999997755432 34566776 33 2 4444 7899999999998 999965 55666
Q ss_pred cCCCc
Q 001759 512 GSNRL 516 (1017)
Q Consensus 512 ~~n~~ 516 (1017)
..|+.
T Consensus 84 lNnG~ 88 (105)
T PF05587_consen 84 LNNGK 88 (105)
T ss_dssp -----
T ss_pred EcCCE
Confidence 65444
No 218
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=45.46 E-value=1.5e+02 Score=31.09 Aligned_cols=32 Identities=6% Similarity=-0.089 Sum_probs=14.1
Q ss_pred HHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 980 AKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 980 ~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
.+.++.+.....+......+..++.++++-++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444444444444433
No 219
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=21 Score=45.45 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 865 GWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVS 903 (1017)
Q Consensus 865 g~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~ 903 (1017)
.-+.|.+-++.-+.+|+||+.|||+.+|++.+.+.+++-
T Consensus 18 er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~f 56 (1001)
T KOG0942|consen 18 ERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREEF 56 (1001)
T ss_pred HHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666789999999999999999988866543
No 220
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.58 E-value=3.8e+02 Score=28.76 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 001759 870 KDFLKIRNHIVK 881 (1017)
Q Consensus 870 k~fl~~R~~aV~ 881 (1017)
..+...++.+..
T Consensus 37 ~~l~~a~~~~a~ 48 (221)
T PF04012_consen 37 EQLRKARQALAR 48 (221)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 221
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=43.91 E-value=2.4e+02 Score=30.07 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001759 939 DEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el 1003 (1017)
+++.-|-+..++++..-+..++.|+.. +.+-.++..+....+.....+.++...|+.+|
T Consensus 81 E~~~~L~aq~rqlEkE~q~L~~~i~~L------qeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 81 EENRSLLAQARQLEKEQQSLVAEIETL------QEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 344555555666666555555555544 44444444444444444444444444444443
No 222
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=43.77 E-value=6.7e+02 Score=31.07 Aligned_cols=57 Identities=4% Similarity=-0.050 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001759 953 AGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 953 ~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~ 1009 (1017)
.+++..+..++... +......+...++++++.++..+...+.+..-|+.+|.++...
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~ 319 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNV 319 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444222 3334455555666666666666666666666666666555443
No 223
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.64 E-value=1.4e+02 Score=35.54 Aligned_cols=26 Identities=8% Similarity=0.076 Sum_probs=14.4
Q ss_pred hhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 989 DDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 989 ~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
.+..+..+..+..++..|+|||..+|
T Consensus 423 ~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 423 EEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 33344455555556666666666554
No 224
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=43.30 E-value=98 Score=34.45 Aligned_cols=19 Identities=11% Similarity=-0.101 Sum_probs=8.8
Q ss_pred cchHHHHhhhHhHHHHHHH
Q 001759 994 LLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 994 ~~~~~Lk~el~~lk~~l~~ 1012 (1017)
..+.+++.++...++++..
T Consensus 119 ~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 119 EQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544443
No 225
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.11 E-value=8.9e+02 Score=33.63 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 001759 851 YLHFAAIKIQQKYRGWKGRKD 871 (1017)
Q Consensus 851 ~~~~AAv~IQk~~Rg~~~Rk~ 871 (1017)
....++..|...|+.|.....
T Consensus 244 ~~~~~l~~i~~~y~~y~~~~~ 264 (1353)
T TIGR02680 244 ALERALRNFLQRYRRYARTML 264 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888865333
No 226
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.06 E-value=40 Score=40.47 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=31.8
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
+-.++.++|..++.+++.......+++..+++|..++..|+++++|.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666777766666555666667777777777777777777653
No 227
>PRK04863 mukB cell division protein MukB; Provisional
Probab=42.01 E-value=1.1e+03 Score=33.19 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001759 866 WKGRKDFLKIRNHIVKLQAHV 886 (1017)
Q Consensus 866 ~~~Rk~fl~~R~~aV~IQa~~ 886 (1017)
..+++.+.........|...+
T Consensus 296 ~eA~kkLe~tE~nL~rI~diL 316 (1486)
T PRK04863 296 YTSRRQLAAEQYRLVEMAREL 316 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444
No 228
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.44 E-value=1.1e+02 Score=27.11 Aligned_cols=24 Identities=0% Similarity=-0.285 Sum_probs=12.9
Q ss_pred hhhhhhccCcchHHHHhhhHhHHH
Q 001759 985 FKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 985 ak~~~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
+-....+++.+++.|+.+|+.+++
T Consensus 45 a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 45 AYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445555566666666555543
No 229
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.98 E-value=1.5e+02 Score=30.90 Aligned_cols=53 Identities=8% Similarity=0.001 Sum_probs=23.8
Q ss_pred HHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 959 LERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 959 ~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
..++++.. ......++++.+..+.++.+.........+.+++.....+.+.++
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 333444444544444444444444444555555444444444443
No 230
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=39.80 E-value=73 Score=27.67 Aligned_cols=43 Identities=5% Similarity=-0.008 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 971 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 971 AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
..+++++.+.....+...+...+..+.+|..+|..|+.+++.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666667777777777777777777654
No 231
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=39.65 E-value=93 Score=33.78 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=50.0
Q ss_pred CCceEEEEEccCCCCCCC--------CCCCceEEEeCCeecceeeeeCCeEEeecCC-CCCceeeEEEecCCC
Q 001759 452 GAETKVLIIGMFLGTKKL--------SSDTKWGCMFGEIEVPAEVLTDNVIRCQAPS-HAAGRVPFYITGSNR 515 (1017)
Q Consensus 452 ~ggtkVlV~G~~~~~~~~--------~~~~~~~c~FGd~~vpae~~~~gvLrC~~Pp-h~pG~Vp~~Vt~~n~ 515 (1017)
.-|.=|+|-|.+|..... ..-.+.++.|+++..|--+++++-+.|.+|. -.+|.+.+.|...+.
T Consensus 3 APG~~vsIfG~~L~~~t~~~~~~plpt~l~Gv~V~vnG~~APl~yvSp~QIN~qvP~~~~~g~~~v~V~~~g~ 75 (215)
T TIGR03437 3 APGSIVSIFGTNLAPATLTAAGGPLPTSLGGVSVTVNGVAAPLLYVSPGQINAQVPYEVAPGAATVTVTYNGG 75 (215)
T ss_pred CCCcEEEEEeccCCCccccccCCCCccccCCeEEEECCEEEEEEEeCcceEEEEeCCCcCCCcEEEEEEeCCc
Confidence 346678899998864211 1225678999999999999999999999997 668999999986543
No 232
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=39.57 E-value=2.7e+02 Score=28.06 Aligned_cols=9 Identities=22% Similarity=0.073 Sum_probs=3.9
Q ss_pred hhHhHHHHH
Q 001759 1002 LNGPTKDNL 1010 (1017)
Q Consensus 1002 el~~lk~~l 1010 (1017)
|+..||+.|
T Consensus 141 E~~kLk~rL 149 (151)
T PF11559_consen 141 EIEKLKERL 149 (151)
T ss_pred HHHHHHHHh
Confidence 344444443
No 233
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.50 E-value=6.5e+02 Score=28.97 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHh
Q 001759 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDS 1001 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~ 1001 (1017)
..+.++++..+...+++.+.+......++.++..
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444444444444443
No 234
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.67 E-value=3.9e+02 Score=28.56 Aligned_cols=69 Identities=10% Similarity=-0.030 Sum_probs=45.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHH----HHHHHhhhhhhccCcchHHHHhhhHh
Q 001759 937 KTDEYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMV----AKFENFKMCDDGSGLLSQGEDSLNGP 1005 (1017)
Q Consensus 937 ~~~~~d~L~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~----~e~~~ak~~~~~~~~~~~~Lk~el~~ 1005 (1017)
+..+++.|......++.+++.+-.+|+.+- +...+...|+|.. ....+++.....+..++..|++.|..
T Consensus 116 nL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 116 NLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688888888888889999999999887 4444555555554 22344555555555555555555544
No 235
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=38.32 E-value=2.3e+02 Score=34.99 Aligned_cols=36 Identities=8% Similarity=-0.152 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhc-------cCcchHHHHhhh
Q 001759 968 NPEARDQYMRMVAKFENFKMCDDG-------SGLLSQGEDSLN 1003 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~-------~~~~~~~Lk~el 1003 (1017)
-..+++|.-|+..++..+|..+++ .++.+++|..+|
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel 213 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL 213 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344455555555555555544433 444444444444
No 236
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=38.15 E-value=5.7e+02 Score=33.00 Aligned_cols=42 Identities=7% Similarity=-0.111 Sum_probs=21.8
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
...+.++|+..+..+..+.+..+........-++.||.+.++
T Consensus 425 e~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~ 466 (735)
T TIGR01062 425 EEHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADAT 466 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344555556655555555555555444444445555554444
No 237
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.54 E-value=1.1e+02 Score=30.44 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhH
Q 001759 941 YEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPT 1006 (1017)
Q Consensus 941 ~d~L~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~l 1006 (1017)
.+.|...|+++..|++..-.++..+. -...-+++.-.++.++.+.+..++.....+..|...|.++
T Consensus 56 s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778887777777766666664 2333333343444444444444444444444444444433
No 238
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=37.51 E-value=63 Score=28.98 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=36.9
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
++..|-+.+..++.+.++.|.+...+..++..|+.+...|+++-.++
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888888888888888888888888877765
No 239
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=37.40 E-value=70 Score=35.35 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 939 DEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
++.+-++..|+.+..+......|+..+.|+.++. ......|....++.+++..|+.++.++|.++..-
T Consensus 200 e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLE-------dkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 200 EDQEKIKLERKRLRNREAASKCRKRKLDRISRLE-------DKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566567666666555555555554444433 3444455555566777777777777777766543
No 240
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.33 E-value=1e+02 Score=36.32 Aligned_cols=39 Identities=13% Similarity=-0.024 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHH
Q 001759 972 RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l 1010 (1017)
+.|.-.++.+.+..++.+.+.+.++.+||.|+..+.++.
T Consensus 33 ~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 33 SAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444443
No 241
>PRK03918 chromosome segregation protein; Provisional
Probab=37.30 E-value=2.6e+02 Score=36.48 Aligned_cols=6 Identities=0% Similarity=-0.031 Sum_probs=2.2
Q ss_pred HHHHhH
Q 001759 861 QKYRGW 866 (1017)
Q Consensus 861 k~~Rg~ 866 (1017)
...|.+
T Consensus 169 ~~~~~~ 174 (880)
T PRK03918 169 EVIKEI 174 (880)
T ss_pred HHHHHH
Confidence 333333
No 242
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.24 E-value=1.3e+02 Score=31.08 Aligned_cols=47 Identities=4% Similarity=0.052 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
...++.+.++++.++.+.+.+++.++.++..|..++...+++-++++
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778778888888888888888888888888888877775
No 243
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=37.09 E-value=3.4e+02 Score=31.35 Aligned_cols=31 Identities=16% Similarity=-0.123 Sum_probs=23.8
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 985 ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
++.+++..-..+.+|+.++.+|+.+|+.+-+
T Consensus 287 TRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 287 TRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6677777778888888888888888876643
No 244
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.55 E-value=5.1e+02 Score=28.65 Aligned_cols=21 Identities=5% Similarity=-0.186 Sum_probs=8.5
Q ss_pred hhccCcchHHHHhhhHhHHHH
Q 001759 989 DDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 989 ~~~~~~~~~~Lk~el~~lk~~ 1009 (1017)
+...+..+..+..++...+.+
T Consensus 128 ~~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 128 LEERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333
No 245
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=36.50 E-value=7.3e+02 Score=28.70 Aligned_cols=27 Identities=7% Similarity=-0.175 Sum_probs=14.9
Q ss_pred hhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 989 DDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 989 ~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
++++...+..|...+.++-++.+.++.
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVT 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555443
No 246
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=35.70 E-value=1.3e+02 Score=35.10 Aligned_cols=36 Identities=14% Similarity=-0.101 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHH
Q 001759 944 LRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMV 979 (1017)
Q Consensus 944 L~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~ 979 (1017)
++....+++.++.++...++..- +...|+++|.|.+
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~ 133 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQ 133 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333 5566677776654
No 247
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=35.55 E-value=7e+02 Score=30.13 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 001759 852 LHFAAIKIQQKYRGWKGRKD 871 (1017)
Q Consensus 852 ~~~AAv~IQk~~Rg~~~Rk~ 871 (1017)
++.|-..+|+...--+.-|+
T Consensus 395 Lqe~la~tqk~LqEsr~eKe 414 (527)
T PF15066_consen 395 LQEALANTQKHLQESRNEKE 414 (527)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 45566778887766554444
No 248
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=35.44 E-value=1.3e+03 Score=31.29 Aligned_cols=30 Identities=7% Similarity=-0.011 Sum_probs=19.2
Q ss_pred HhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 984 NFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 984 ~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
.....++....++..|..+|+++-..|+.-
T Consensus 1721 ~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1721 RNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 344446666677777777777776666543
No 249
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=34.20 E-value=6.8e+02 Score=32.64 Aligned_cols=42 Identities=5% Similarity=0.031 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001759 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~ 1009 (1017)
..++++|+..+.+++++.+.-++..+....-+++||.++|++
T Consensus 429 ~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkk 470 (800)
T TIGR01063 429 REKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQ 470 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 555566666666666665555555555555555555555543
No 250
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.09 E-value=1.2e+03 Score=31.89 Aligned_cols=41 Identities=5% Similarity=-0.009 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 971 ARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 971 AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
++.+...+..++...+...+.++.++.++...+..++++++
T Consensus 868 ~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 908 (1163)
T COG1196 868 LEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444334433444444444444444444444444333
No 251
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.83 E-value=1.3e+03 Score=30.76 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 948 RKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
-+++...+.++..+++..+ .-.+++++..+.+.+++.+|..-++.++.+...+..|..++++|+.
T Consensus 292 ~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 292 ISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444455666666666666 3466666666666666666666666666666666666666666653
No 252
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.70 E-value=6.4e+02 Score=34.31 Aligned_cols=61 Identities=8% Similarity=-0.019 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001759 949 KQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 949 kq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~ 1009 (1017)
..+..+++++..+|+..- +..+++.++..+..++...+..+..++.++..++.++..+..+
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 317 (1163)
T COG1196 256 EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333332 2333333333333333333333444444444444444444444
No 253
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.65 E-value=76 Score=30.63 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 972 RDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
.+++..|..++.+.|..+..+..++..|+-|...|++.|...
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666666666543
No 254
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.41 E-value=1.7e+02 Score=25.98 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 955 VEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 955 ~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
+++.-++||..+ -+..++-+...++++-.....+....+-..+.|..+..+||++-+++
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555 44455555544444433333333334445555666666666665544
No 255
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=33.03 E-value=18 Score=31.20 Aligned_cols=8 Identities=75% Similarity=1.514 Sum_probs=5.5
Q ss_pred ccCcccee
Q 001759 70 KDGHRWRK 77 (1017)
Q Consensus 70 ~dg~~w~~ 77 (1017)
.|||.|||
T Consensus 2 ~Dgy~WRK 9 (60)
T PF03106_consen 2 DDGYRWRK 9 (60)
T ss_dssp -SSS-EEE
T ss_pred CCCCchhh
Confidence 49999987
No 256
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=32.76 E-value=72 Score=30.46 Aligned_cols=71 Identities=13% Similarity=0.020 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 942 EFLRIGRKQKFAGVEKALERVKSMVR--NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 942 d~L~~~rkq~e~~~~~A~~rVqs~~r--~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
..+...+.+++..++.....+-.... -..||++-..+..+..+++..+......++.|+.+|..||..++.
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666667666665533322 244454444444444556666666666666666666666655443
No 257
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=32.76 E-value=9e+02 Score=28.66 Aligned_cols=16 Identities=6% Similarity=-0.122 Sum_probs=6.5
Q ss_pred hHHHHhhhHhHHHHHH
Q 001759 996 SQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 996 ~~~Lk~el~~lk~~l~ 1011 (1017)
..+|+.++..++.++.
T Consensus 320 ~~~l~~~l~~~~~~~~ 335 (444)
T TIGR03017 320 EAELREALENQKAKVL 335 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 258
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=32.60 E-value=56 Score=34.55 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHH----HHHhCCCCCCccCCC--CCchh
Q 001759 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMR----PIIATGVSPNFRDAR--GRTAL 682 (1017)
Q Consensus 609 ~~~~~ll~~al~~~l~e~Lv~~Lle~Gad~n~~D~~G~TpLH~Aa~~G~~~iV~----~LL~~Gadvn~~D~~--G~TPL 682 (1017)
.....+++.||++...+.+.- + |-+.... +-.+..-.|.......+.. +++....+-...|.. =.--|
T Consensus 74 ~~~q~LFElAC~~qkydiV~W-I---~qnL~i~--~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl 147 (192)
T PF03158_consen 74 YLNQELFELACEEQKYDIVKW-I---GQNLHIY--NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHL 147 (192)
T ss_pred hHHHHHHHHHHHHccccHHHH-H---hhccCCC--CchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHH
Confidence 355677888887655432211 1 2222221 1234556666666655532 333442222111111 01347
Q ss_pred hHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHH
Q 001759 683 HWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAE 738 (1017)
Q Consensus 683 H~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe 738 (1017)
.+|+..|-...+--.+++|.+++. ++|..|+..+|..|+.+++.
T Consensus 148 ~~a~~kgll~F~letlkygg~~~~------------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 148 EKAAAKGLLPFVLETLKYGGNVDI------------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHCCCHHHHHHHHHcCCcccH------------HHHHHHHHhhHHHHHHHhhc
Confidence 789999999999888999988875 36888999999999888764
No 259
>PRK05560 DNA gyrase subunit A; Validated
Probab=32.58 E-value=7.9e+02 Score=32.08 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=25.9
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~ 1009 (1017)
...++++|+..+++++++.+..++..+....-+++||.++|++
T Consensus 431 e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkk 473 (805)
T PRK05560 431 ERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEK 473 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666655555555566666665554
No 260
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.22 E-value=7.7e+02 Score=30.68 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 858 KIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKV 898 (1017)
Q Consensus 858 ~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l 898 (1017)
..|..|+.|+. .++....+|...|-...|+.|.+.
T Consensus 158 ~~~~~y~~w~~------~~~~l~~~~~~~~e~~~~~d~L~f 192 (557)
T COG0497 158 AYQEAYQAWKQ------ARRELEDLQEKERERAQRADLLQF 192 (557)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677766654 444555667777777777776544
No 261
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=31.77 E-value=68 Score=37.89 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001759 877 NHIVKLQAHVRGHQVRKQYKKV-VWS 901 (1017)
Q Consensus 877 ~~aV~IQa~~Rg~qaRK~yk~l-~~S 901 (1017)
++|+.||..+||++||.+.+.. .|.
T Consensus 18 kaAilIQkWYRr~~ARle~rrr~twq 43 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEARRRCTWQ 43 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4889999999999999988776 444
No 262
>PF12728 HTH_17: Helix-turn-helix domain
Probab=31.74 E-value=34 Score=27.76 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=26.3
Q ss_pred cCChHHHHHHHHccc-cc--ccCCCCCCCCCCCceeeeehhhh-hhh
Q 001759 26 WLRPTEICEILRNYQ-KF--HLTPDPPVRPPAGSLFLFDRKAL-RYF 68 (1017)
Q Consensus 26 w~~~~e~~~~l~~~~-~~--~~~~~~~~~p~~g~~~~~~~~~~-~~~ 68 (1017)
||++.|+|++|.--. .+ .+.....+....|.-++|++..| +|+
T Consensus 1 ~lt~~e~a~~l~is~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~ 47 (51)
T PF12728_consen 1 YLTVKEAAELLGISRSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWL 47 (51)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHH
Confidence 789999999994332 22 13222211223677799999887 443
No 263
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.35 E-value=6.1e+02 Score=31.44 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=15.0
Q ss_pred hccCcchHHHHhhhHhHHHHHHH
Q 001759 990 DGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 990 ~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
...+.+++.|+.+|..++++++|
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqa 301 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQA 301 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777665
No 264
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=31.16 E-value=5.5e+02 Score=33.14 Aligned_cols=41 Identities=7% Similarity=-0.045 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001759 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
..++++|++.+..++++.+..++..+....-++.||.++|+
T Consensus 439 ~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~ 479 (742)
T PRK05561 439 EIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAK 479 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444444444444444444443
No 265
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.97 E-value=40 Score=32.35 Aligned_cols=36 Identities=8% Similarity=-0.082 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001759 973 DQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 973 ~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
..|.+++.++.+++.++.+++.+++.|+.++..|+.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345566666666666666677777777777777665
No 266
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=30.92 E-value=2.6e+02 Score=31.61 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=23.4
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
+.++|..++..++++++++....++...++.+.-.+++.+|++++
T Consensus 281 ~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 281 KFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554455555555555555555555544
No 267
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=30.77 E-value=60 Score=28.93 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=31.9
Q ss_pred cHHHHHHHcCChhhHHHHHhCCCCCCccCCCCCchhhHHHhcCCHHHHHHHHHc
Q 001759 647 GVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREETVIMLVKL 700 (1017)
Q Consensus 647 TpLH~Aa~~G~~~iV~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~ 700 (1017)
..|..|...|+.++++.+++.+ .++ ...|..|...-+-+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4567777777888877777654 222 2357777777777777777764
No 268
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.16 E-value=3e+02 Score=27.21 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHH
Q 001759 941 YEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKF 982 (1017)
Q Consensus 941 ~d~L~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~ 982 (1017)
.+.|....++++..+......+.... ....|++++-++..+.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554 4555555555555433
No 269
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=30.10 E-value=1.9e+02 Score=28.15 Aligned_cols=45 Identities=13% Similarity=-0.008 Sum_probs=30.9
Q ss_pred hcHHHHHHHHHHHHHHHHhhhh----hhccCcchHHHHhhhHhHHHHHH
Q 001759 967 RNPEARDQYMRMVAKFENFKMC----DDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~----~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
|...-.+-.++-..+++.+... +..+.++...|+.|.+.|+++++
T Consensus 72 RC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eElk 120 (120)
T PF10482_consen 72 RCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEELK 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 5555555556555666554433 55677888889999999998875
No 270
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.07 E-value=1.3e+02 Score=37.40 Aligned_cols=10 Identities=30% Similarity=0.949 Sum_probs=4.4
Q ss_pred HHHHHHhhhh
Q 001759 910 LRWRRRGSGL 919 (1017)
Q Consensus 910 ~rwrrkr~~L 919 (1017)
.+|..+...|
T Consensus 178 ~~w~~~~~~L 187 (555)
T TIGR03545 178 QKWKKRKKDL 187 (555)
T ss_pred HHHHHHHHhc
Confidence 3444444444
No 271
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=29.89 E-value=7.1e+02 Score=32.16 Aligned_cols=41 Identities=7% Similarity=-0.102 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001759 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
..++++|+..++.++++.+.-+...+....-++.||.++|+
T Consensus 429 ~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~ 469 (738)
T TIGR01061 429 IFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKK 469 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444444444444444443
No 272
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=29.84 E-value=79 Score=39.59 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001759 878 HIVKLQAHVRGHQVRKQYKKVV 899 (1017)
Q Consensus 878 ~aV~IQa~~Rg~qaRK~yk~l~ 899 (1017)
-|-+||.+||.+.+||+|.++.
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999998883
No 273
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.69 E-value=1.3e+02 Score=37.24 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 001759 899 VWSVSIVEKAILRWRRRGSGLRGFRVGN 926 (1017)
Q Consensus 899 ~~Sv~~lek~i~rwrrkr~~Lr~~~~e~ 926 (1017)
+.++...|+.-..|..++........++
T Consensus 160 L~T~~~~~~~~~~~k~~~~~w~~~~~~L 187 (555)
T TIGR03545 160 LKTVETAEEIEKSLKAMQQKWKKRKKDL 187 (555)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555656665444444
No 274
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=29.44 E-value=2.9e+02 Score=33.14 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001759 868 GRKDFLKIRNHIVKLQAHVRGHQVRKQ 894 (1017)
Q Consensus 868 ~Rk~fl~~R~~aV~IQa~~Rg~qaRK~ 894 (1017)
-|++|+.+...-++.|+++-|+...++
T Consensus 300 l~ek~r~l~~D~nk~~~~~~~mk~K~~ 326 (622)
T COG5185 300 LREKWRALKSDSNKYENYVNAMKQKSQ 326 (622)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 356677777788888888888876553
No 275
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=29.29 E-value=8.7e+02 Score=28.06 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001759 894 QYKKVVWSVSIVEKAILRWRRRG 916 (1017)
Q Consensus 894 ~yk~l~~Sv~~lek~i~rwrrkr 916 (1017)
+.......+...|..+..|+.+.
T Consensus 178 ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 178 EVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333344444555555555443
No 276
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=28.91 E-value=75 Score=28.30 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=39.4
Q ss_pred chhhHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHHc
Q 001759 680 TALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEA 739 (1017)
Q Consensus 680 TPLH~Aa~~G~~eiV~~LL~~GAdvn~~dd~~~~d~~G~TPLhlAa~~G~~~iv~~LLe~ 739 (1017)
.-|..|...|+.++++.+++.+ .++ ...+..|+...+.+++.+|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4578999999999999999765 221 3579999999999999999985
No 277
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=28.80 E-value=99 Score=34.65 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=2.8
Q ss_pred ceEEEEe
Q 001759 438 LFSIRDF 444 (1017)
Q Consensus 438 ~f~I~d~ 444 (1017)
--+|..+
T Consensus 214 ~~t~Lq~ 220 (348)
T KOG3584|consen 214 GTTILQY 220 (348)
T ss_pred ceeeEee
Confidence 3344443
No 278
>smart00338 BRLZ basic region leucin zipper.
Probab=28.62 E-value=1.4e+02 Score=25.63 Aligned_cols=28 Identities=4% Similarity=-0.131 Sum_probs=13.5
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 985 ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
.......++.++.+|+.++..|..++..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555444
No 279
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=28.55 E-value=1.6e+02 Score=31.24 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH-HHHHhhh-hcHHHHHHHHHHH---HHHHHhhhhhhccCcchHHHHhh
Q 001759 938 TDEYEFLRIGRKQKFAGVEKAL-ERVKSMV-RNPEARDQYMRMV---AKFENFKMCDDGSGLLSQGEDSL 1002 (1017)
Q Consensus 938 ~~~~d~L~~~rkq~e~~~~~A~-~rVqs~~-r~~~AR~qyrrl~---~e~~~ak~~~~~~~~~~~~Lk~e 1002 (1017)
..|.+.++..+..+..++.++- .++..|+ ++...++.-+++. .|++..|....+++.++++|+..
T Consensus 8 ~sDeell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 8 VSDEELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677766776666665543 3566666 5666666655655 44566666666666666666543
No 280
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=27.49 E-value=2.8e+02 Score=29.54 Aligned_cols=37 Identities=11% Similarity=-0.055 Sum_probs=21.8
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el 1003 (1017)
+...+|+|...|..+-+.+++.|.+++..+..|..+.
T Consensus 148 ~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 148 RQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666665666666655555555555443
No 281
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.45 E-value=2.7e+02 Score=30.59 Aligned_cols=9 Identities=33% Similarity=0.287 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 001759 942 EFLRIGRKQ 950 (1017)
Q Consensus 942 d~L~~~rkq 950 (1017)
.+|.+.++.
T Consensus 32 ~~L~e~~kE 40 (230)
T PF10146_consen 32 KCLEEYRKE 40 (230)
T ss_pred HHHHHHHHH
Confidence 344444443
No 282
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.97 E-value=3.5e+02 Score=27.45 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhcc---CcchHHHHhhhHhHHHHHH
Q 001759 941 YEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGS---GLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 941 ~d~L~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~---~~~~~~Lk~el~~lk~~l~ 1011 (1017)
.+.+.+..++++.+..+.-..|.++. +...+-.++.++...+..++..++.. .+.++.|...|..|-++|.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH
Confidence 44555556666666666666666666 56666666666666665555443332 2334445555555555443
No 283
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.79 E-value=1.8e+02 Score=29.62 Aligned_cols=45 Identities=4% Similarity=-0.049 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhh-------hhccCcchHHHHhhhHhHHHHHHH
Q 001759 968 NPEARDQYMRMVAKFENFKMC-------DDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~-------~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
...+|+++...+.|++..-+. +.++..|+.+|+.+|.+++.+...
T Consensus 63 t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 63 TSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666543322 444555555555555555554443
No 284
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=26.77 E-value=24 Score=30.37 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.9
Q ss_pred ccCcccee
Q 001759 70 KDGHRWRK 77 (1017)
Q Consensus 70 ~dg~~w~~ 77 (1017)
.|||.|||
T Consensus 2 ~DGy~WRK 9 (59)
T smart00774 2 DDGYQWRK 9 (59)
T ss_pred CCcccccc
Confidence 59999987
No 285
>PRK06835 DNA replication protein DnaC; Validated
Probab=26.67 E-value=2.6e+02 Score=32.35 Aligned_cols=47 Identities=4% Similarity=-0.085 Sum_probs=33.4
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhcc---CcchHHHHhhhHhHHHHHHHhhh
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGS---GLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~---~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
+..+..++..++ -++.+++.+... +..+++|+.++..|+++.+++++
T Consensus 37 ~~~~id~~i~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~ 86 (329)
T PRK06835 37 EIAEIDDEIAKL--GIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLV 86 (329)
T ss_pred cHHHHHHHHHHH--HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 445677777554 78899999999999999888765
No 286
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=26.46 E-value=5.3e+02 Score=30.40 Aligned_cols=7 Identities=14% Similarity=0.610 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 001759 881 KLQAHVR 887 (1017)
Q Consensus 881 ~IQa~~R 887 (1017)
.|+..+|
T Consensus 78 di~~qlr 84 (499)
T COG4372 78 DIRPQLR 84 (499)
T ss_pred HHHHHHH
Confidence 3455554
No 287
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.94 E-value=9.8e+02 Score=26.89 Aligned_cols=14 Identities=29% Similarity=-0.097 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 001759 942 EFLRIGRKQKFAGV 955 (1017)
Q Consensus 942 d~L~~~rkq~e~~~ 955 (1017)
..|++-|.+.+...
T Consensus 169 ~~L~eiR~~ye~~~ 182 (312)
T PF00038_consen 169 AALREIRAQYEEIA 182 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 34444444444333
No 288
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.53 E-value=1.6e+02 Score=31.23 Aligned_cols=20 Identities=5% Similarity=-0.127 Sum_probs=10.6
Q ss_pred cchHHHHhhhHhHHHHHHHh
Q 001759 994 LLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 994 ~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
..++.++.++..+++.+..|
T Consensus 135 ~~i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 289
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.32 E-value=6.5e+02 Score=27.70 Aligned_cols=15 Identities=7% Similarity=0.401 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhh
Q 001759 973 DQYMRMVAKFENFKM 987 (1017)
Q Consensus 973 ~qyrrl~~e~~~ak~ 987 (1017)
++|.+++.+..+.+.
T Consensus 88 eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 88 EEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555544333
No 290
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.19 E-value=2.5e+02 Score=35.56 Aligned_cols=8 Identities=0% Similarity=-0.026 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001759 948 RKQKFAGV 955 (1017)
Q Consensus 948 rkq~e~~~ 955 (1017)
+++++.++
T Consensus 239 le~a~~~l 246 (650)
T TIGR03185 239 LEEAQRSL 246 (650)
T ss_pred HHHHHHHH
Confidence 33333333
No 291
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.16 E-value=2.8e+02 Score=31.89 Aligned_cols=22 Identities=5% Similarity=-0.148 Sum_probs=10.8
Q ss_pred ccCcchHHHHhhhHhHHHHHHH
Q 001759 991 GSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 991 ~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
..+.+.+.++.++..+.++|..
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555443
No 292
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=25.15 E-value=1.1e+03 Score=27.30 Aligned_cols=137 Identities=9% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccc
Q 001759 869 RKDFLKIRNHIVKLQAHVRGHQVRKQ-------------------YKKVVWSVSIVEKAILRWRRRGSGLRGFRVGNSTA 929 (1017)
Q Consensus 869 Rk~fl~~R~~aV~IQa~~Rg~qaRK~-------------------yk~l~~Sv~~lek~i~rwrrkr~~Lr~~~~e~~~~ 929 (1017)
..++..+...+..+++..-..++-.. -..+......++.....+..+...++......
T Consensus 80 ~~~l~~l~~~~~~l~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--- 156 (423)
T TIGR01843 80 EADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQL--- 156 (423)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHh
Q 001759 930 NVASENEKTDEYEFLRIGRKQKFAGVEKALERVKSM----VRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGP 1005 (1017)
Q Consensus 930 ~~~~~~~~~~~~d~L~~~rkq~e~~~~~A~~rVqs~----~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~ 1005 (1017)
..+...++...+.++.++..+...+... -++-..+.+|...+.++.+++..+...+.++..++.++..
T Consensus 157 --------~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 157 --------EAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhc
Q 001759 1006 TKDNLHAYVAD 1016 (1017)
Q Consensus 1006 lk~~l~~~~~~ 1016 (1017)
++.++....++
T Consensus 229 ~~~~~~~~~~~ 239 (423)
T TIGR01843 229 LQLERQQIEQT 239 (423)
T ss_pred HHHHHHHHHHH
No 293
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=25.11 E-value=1.3e+03 Score=28.75 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=14.2
Q ss_pred cchHHHHhhhHhHHHHHHHh
Q 001759 994 LLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 994 ~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
.....|+.++..+++.|+.-
T Consensus 150 ~i~~~Lk~e~~~lr~~L~~~ 169 (593)
T PF06248_consen 150 KILKLLKDEYSELRENLQYQ 169 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667788888777777653
No 294
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=25.04 E-value=7.9e+02 Score=29.72 Aligned_cols=40 Identities=0% Similarity=-0.049 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 973 DQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 973 ~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
.++..+..++.+........--.+.+++.++..++.++++
T Consensus 254 ~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 254 GRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 3344444343333333333334444555555555555443
No 295
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.02 E-value=3.9e+02 Score=27.92 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
..+.|++...+..++++ ...+...++.+|+.+++++|-++=.|+.
T Consensus 115 K~~~r~e~~~~~~ki~e---~~~ki~~ei~~lr~~iE~~K~~~lr~~~ 159 (177)
T PF07798_consen 115 KGRIREEQAKQELKIQE---LNNKIDTEIANLRTEIESLKWDTLRWLV 159 (177)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555444333 3455677788999999999988877753
No 296
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=25.00 E-value=7e+02 Score=32.99 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHH-------hhhhhhccCcchHHHHhhhHhHHH
Q 001759 949 KQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFEN-------FKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 949 kq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~-------ak~~~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
+.....++.+...+-... +..+..+||+.+...++. ....+..++.++..|-.+|..||.
T Consensus 491 knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333344444444443333 556667777776655543 334455566666777777766666
No 297
>PRK03918 chromosome segregation protein; Provisional
Probab=24.96 E-value=5.7e+02 Score=33.33 Aligned_cols=6 Identities=17% Similarity=1.010 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001759 973 DQYMRM 978 (1017)
Q Consensus 973 ~qyrrl 978 (1017)
++|..+
T Consensus 666 ~~~~~l 671 (880)
T PRK03918 666 EEYLEL 671 (880)
T ss_pred HHHHHH
Confidence 333333
No 298
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.92 E-value=1.7e+02 Score=30.16 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhh--hhccCcchHHHHhhhHhHHHHHHHh
Q 001759 972 RDQYMRMVAKFENFKMC--DDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~--~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
+.+++.+..++...... .+.+...+..|+.++..+.+.|+.|
T Consensus 92 ~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 92 KKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555443333 3445555555555555555555554
No 299
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=24.76 E-value=3.8e+02 Score=26.85 Aligned_cols=25 Identities=8% Similarity=-0.174 Sum_probs=13.2
Q ss_pred hhccCcchHHHHhhhHhHHHHHHHh
Q 001759 989 DDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 989 ~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
++++..++..++.|+..+|...+++
T Consensus 90 v~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 90 VEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 300
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.76 E-value=3.6e+02 Score=31.27 Aligned_cols=37 Identities=5% Similarity=-0.009 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhhh-hhccCcchHHHHhhhHhHHH
Q 001759 972 RDQYMRMVAKFENFKMC-DDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 972 R~qyrrl~~e~~~ak~~-~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
+++++.++..+++.+.. ..+..+.+++|+.+++..+.
T Consensus 45 kkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 45 KKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh
Confidence 33444444555544332 22334555556655555443
No 301
>PRK02224 chromosome segregation protein; Provisional
Probab=24.57 E-value=1.2e+03 Score=30.49 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccc
Q 001759 868 GRKDFLKIRNHIVKLQAHVRGHQV------------RKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASEN 935 (1017)
Q Consensus 868 ~Rk~fl~~R~~aV~IQa~~Rg~qa------------RK~yk~l~~Sv~~lek~i~rwrrkr~~Lr~~~~e~~~~~~~~~~ 935 (1017)
...++..++..+-.+++..-.+.. ..++..+...+.-++..+.+-...+.-...++.-.....
T Consensus 535 ~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~i~~~~~~~~----- 609 (880)
T PRK02224 535 KRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIE----- 609 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhh-----h-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001759 936 EKTDEYEFLRIGRKQKFAGVEKALERVKSM-----V-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 936 ~~~~~~d~L~~~rkq~e~~~~~A~~rVqs~-----~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~ 1009 (1017)
+...+.+.++..+.+...++++.-.+|... . +...++++|.++...+...+..++..+.....+..+++.++..
T Consensus 610 ~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~ 689 (880)
T PRK02224 610 RLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE 689 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 001759 1010 LHAY 1013 (1017)
Q Consensus 1010 l~~~ 1013 (1017)
++.+
T Consensus 690 ~e~~ 693 (880)
T PRK02224 690 LEEL 693 (880)
T ss_pred HHHH
No 302
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.51 E-value=1.4e+02 Score=34.34 Aligned_cols=23 Identities=0% Similarity=-0.213 Sum_probs=9.2
Q ss_pred hhhhhccCcchHHHHhhhHhHHH
Q 001759 986 KMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 986 k~~~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
+.....++.++.+|+..|.+++.
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344444444444433333
No 303
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=24.43 E-value=1.1e+03 Score=27.00 Aligned_cols=77 Identities=18% Similarity=0.098 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH-----HHHHHhhhhhhccCc-------chHHHHhhhHhH
Q 001759 939 DEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMV-----AKFENFKMCDDGSGL-------LSQGEDSLNGPT 1006 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~-----~e~~~ak~~~~~~~~-------~~~~Lk~el~~l 1006 (1017)
.+...|.+..+.+..+++.--.-+..+.+...+..+|-..+ ..+.+.......... .+..+..+-..|
T Consensus 135 ~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~L 214 (309)
T PF09728_consen 135 EENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKEL 214 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444433333444444444444443333 222222333333333 788888888999
Q ss_pred HHHHHHhhh
Q 001759 1007 KDNLHAYVA 1015 (1017)
Q Consensus 1007 k~~l~~~~~ 1015 (1017)
+.||..|+.
T Consensus 215 r~QL~~Y~~ 223 (309)
T PF09728_consen 215 REQLNLYSE 223 (309)
T ss_pred HHHHHHHHH
Confidence 999998875
No 304
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.16 E-value=1e+03 Score=26.43 Aligned_cols=118 Identities=9% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccHHHHHHHHHHHHHHH
Q 001759 877 NHIVKLQAHVRGHQVRKQYKKV--VWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASENEKTDEYEFLRIGRKQKFAG 954 (1017)
Q Consensus 877 ~~aV~IQa~~Rg~qaRK~yk~l--~~Sv~~lek~i~rwrrkr~~Lr~~~~e~~~~~~~~~~~~~~~~d~L~~~rkq~e~~ 954 (1017)
+..+.|| .+.--..|..-+.- ...+-.++..+-+-+..-..+ +.+.+-++....+.+..
T Consensus 7 ~~L~~iq-~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~------------------~~e~e~le~qv~~~e~e 67 (239)
T COG1579 7 KSLLAIQ-KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEAL------------------EIELEDLENQVSQLESE 67 (239)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhh---hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 955 VEKALERVKSMV---RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 955 ~~~A~~rVqs~~---r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
+++.-.|+...- -.-.-.++|+.+..++..+|.....++.++.++..+++.+..++...
T Consensus 68 i~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 68 IQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 305
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=24.05 E-value=3.5e+02 Score=26.30 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhh--hcHHHHHHHHHHHHHHHHhhhh-hhccCcchHHHHhhhHhHHHHHHH
Q 001759 948 RKQKFAGVEKALERVKSMV--RNPEARDQYMRMVAKFENFKMC-DDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 948 rkq~e~~~~~A~~rVqs~~--r~~~AR~qyrrl~~e~~~ak~~-~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
+.....++++-...|++.. +...|..+++++..+++.-++. ++++.+.+...+..-+..+...++
T Consensus 17 ~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea 84 (111)
T PF03763_consen 17 KAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEA 84 (111)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666777777776 6777788888888888776666 777777777776666666655543
No 306
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=23.81 E-value=6.5e+02 Score=24.24 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHH
Q 001759 941 YEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFEN 984 (1017)
Q Consensus 941 ~d~L~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ 984 (1017)
...|++..+..+..+.++...+.++. |...+-+....+..++..
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777888888888888887 888888888888888764
No 307
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=1.6e+03 Score=28.71 Aligned_cols=44 Identities=5% Similarity=-0.149 Sum_probs=19.7
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHH
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l 1010 (1017)
....+.+.|+.++.+........-.+.+.+.-+...++.+.+++
T Consensus 490 e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~ 533 (698)
T KOG0978|consen 490 ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQE 533 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666655543333333333333333333344444433
No 308
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=23.65 E-value=66 Score=27.07 Aligned_cols=25 Identities=0% Similarity=-0.371 Sum_probs=16.3
Q ss_pred HHhhhhhhccCcchHHHHhhhHhHH
Q 001759 983 ENFKMCDDGSGLLSQGEDSLNGPTK 1007 (1017)
Q Consensus 983 ~~ak~~~~~~~~~~~~Lk~el~~lk 1007 (1017)
..|+..+.+++.++..|+.+|.-++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466667777777777777766544
No 309
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.64 E-value=78 Score=35.34 Aligned_cols=33 Identities=9% Similarity=-0.067 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhhhccCcchHHHHhhhHhHHH
Q 001759 976 MRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKD 1008 (1017)
Q Consensus 976 rrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~ 1008 (1017)
|-|+..+++....+.+.++++++||.||..++|
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555544443
No 310
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.54 E-value=2.6e+02 Score=33.31 Aligned_cols=68 Identities=7% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 946 IGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 946 ~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
..+++....+++-..+|.... +...+.++++.+..++.....++......+..++..|..+...|+++
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
No 311
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.25 E-value=9.2e+02 Score=29.96 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-----hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHH
Q 001759 945 RIGRKQKFAGVEKALERVKSMV-----RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNL 1010 (1017)
Q Consensus 945 ~~~rkq~e~~~~~A~~rVqs~~-----r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l 1010 (1017)
+..|+.+|..++.-+.+|+... -...||+++++++..+...++.+..+++.+..|-.+|..|+-+|
T Consensus 263 ~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql 333 (546)
T KOG0977|consen 263 RQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQL 333 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhh
Confidence 3345555555555555555311 35668899999987766666665555555555555555554443
No 312
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.89 E-value=1.7e+03 Score=28.58 Aligned_cols=140 Identities=9% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccHHHHHHHHH
Q 001759 876 RNHIVKLQAHVRGHQVRKQYKKV-------VWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASENEKTDEYEFLRIGR 948 (1017)
Q Consensus 876 R~~aV~IQa~~Rg~qaRK~yk~l-------~~Sv~~lek~i~rwrrkr~~Lr~~~~e~~~~~~~~~~~~~~~~d~L~~~r 948 (1017)
..++-...+...-|.....-.+. .|--..++..-.+.......+..|+.+..........-.+.+..-+...+
T Consensus 167 ~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql 246 (754)
T TIGR01005 167 KLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTEL 246 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh------------------------hhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhH
Q 001759 949 KQKFAGVEKALERVKSM------------------------VRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNG 1004 (1017)
Q Consensus 949 kq~e~~~~~A~~rVqs~------------------------~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~ 1004 (1017)
..++.+...+..+.+.+ -....+|.++.++..++.+........--.+..++.++.
T Consensus 247 ~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~ 326 (754)
T TIGR01005 247 SRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLA 326 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q ss_pred hHHHHHHHhhh
Q 001759 1005 PTKDNLHAYVA 1015 (1017)
Q Consensus 1005 ~lk~~l~~~~~ 1015 (1017)
.++.+|+.-+.
T Consensus 327 ~l~~~i~~e~~ 337 (754)
T TIGR01005 327 DLDAQIRSELQ 337 (754)
T ss_pred HHHHHHHHHHH
No 313
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=22.77 E-value=1.3e+03 Score=27.92 Aligned_cols=38 Identities=16% Similarity=-0.007 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 974 QYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 974 qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
+++.|..|-++.-.++++...+.++|..++++.+-+.|
T Consensus 369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 369 QFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 33444444344444444444455555555444444433
No 314
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=22.58 E-value=2.6e+02 Score=30.63 Aligned_cols=43 Identities=9% Similarity=-0.118 Sum_probs=22.4
Q ss_pred hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHH
Q 001759 967 RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDN 1009 (1017)
Q Consensus 967 r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~ 1009 (1017)
+...++.+-.++++.-+..-++..++...++.++++|..+|++
T Consensus 105 en~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 105 ENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 4444444555554444444444444555566666666666654
No 315
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.46 E-value=1e+03 Score=29.51 Aligned_cols=63 Identities=19% Similarity=0.095 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhc--cCcchHHHHhhhHhHHHHHHHh
Q 001759 951 KFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDG--SGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 951 ~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~--~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
.+....+....|+.+- .-..||..+.+++..+...+..+.+ +...-+.....+..+.++++.+
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l 460 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEAL 460 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3333333333333333 3344455555555444444433222 3334444444445555555444
No 316
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.42 E-value=1.2e+02 Score=31.63 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 001759 951 KFAGVEKALE 960 (1017)
Q Consensus 951 ~e~~~~~A~~ 960 (1017)
.|.++..|+.
T Consensus 5 ~EsklN~AIE 14 (166)
T PF04880_consen 5 FESKLNQAIE 14 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 317
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=22.23 E-value=6.7e+02 Score=25.17 Aligned_cols=58 Identities=7% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 954 GVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 954 ~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
.+..++.....+. ....++.....++..+.++|..+.-...++.+|..+-...++-|+
T Consensus 66 ~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~ 124 (142)
T PF04048_consen 66 GFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIE 124 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4445555555555 677888888888888888888887777777777766555554443
No 318
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.21 E-value=4.4e+02 Score=28.30 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcHHHHHHHHHHHH----HHHH--------------hhhhhhccCcch
Q 001759 940 EYEFLRIGRKQKFAGVEKALERVKSM-----VRNPEARDQYMRMVA----KFEN--------------FKMCDDGSGLLS 996 (1017)
Q Consensus 940 ~~d~L~~~rkq~e~~~~~A~~rVqs~-----~r~~~AR~qyrrl~~----e~~~--------------ak~~~~~~~~~~ 996 (1017)
|.-.|+.....++.++.++-...... ......|+||..|+. ++++ .+..++-.+.++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 34457766777777776665555541 123566778777762 2322 233355556666
Q ss_pred HHHHhhhHhHHHHHHHh
Q 001759 997 QGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 997 ~~Lk~el~~lk~~l~~~ 1013 (1017)
+.|..-|..-+++|+.+
T Consensus 177 ~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666666666654
No 319
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.17 E-value=8.5e+02 Score=30.23 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=9.0
Q ss_pred cCcchHHHHhhhHhHHHHHHH
Q 001759 992 SGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 992 ~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
+..+.+.|+..|..++-++.+
T Consensus 337 mn~Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 320
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.15 E-value=1.6e+03 Score=28.17 Aligned_cols=30 Identities=7% Similarity=-0.203 Sum_probs=23.4
Q ss_pred HHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 983 ENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 983 ~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
++.|+++.|.......|+.++..+..+|++
T Consensus 501 ~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 501 RKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777778777888888888888888775
No 321
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.10 E-value=1.3e+02 Score=25.79 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHH
Q 001759 978 MVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 978 l~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~ 1011 (1017)
|...+.....+...+..++..|+.++.+|+.++|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444555555566777777777777777764
No 322
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=22.04 E-value=1.6e+02 Score=35.34 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=9.7
Q ss_pred HHHHhhhhcHHHHHHHHHHHHHH
Q 001759 960 ERVKSMVRNPEARDQYMRMVAKF 982 (1017)
Q Consensus 960 ~rVqs~~r~~~AR~qyrrl~~e~ 982 (1017)
.||....|.++-.+|-||-+.++
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeY 273 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEY 273 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhH
Confidence 33333344444444444444443
No 323
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.96 E-value=6.4e+02 Score=28.41 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------cHHHHHHHHHHHHHHHHhhhh
Q 001759 938 TDEYEFLRIGRKQKFAGVEKALERVKSMVR-------------NPEARDQYMRMVAKFENFKMC 988 (1017)
Q Consensus 938 ~~~~d~L~~~rkq~e~~~~~A~~rVqs~~r-------------~~~AR~qyrrl~~e~~~ak~~ 988 (1017)
..+.+.++....+++.++.++...+++... +..+++++.+...++..+++.
T Consensus 141 ~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~ 204 (301)
T PF14362_consen 141 DAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQ 204 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777777777777777766653 344444555554444444444
No 324
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.80 E-value=3.5e+02 Score=25.57 Aligned_cols=29 Identities=7% Similarity=-0.100 Sum_probs=13.6
Q ss_pred hhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 985 FKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 985 ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
.+++...+..++.++..++..+.++++.+
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555444
No 325
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=21.79 E-value=1.2e+03 Score=28.10 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 973 DQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 973 ~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
.+..+++.|+.+.+++++.+++...+.+...+-.+++|++|
T Consensus 405 ~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~~eL~~~ 445 (445)
T cd00187 405 LEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF 445 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 33444444444445455555555555555555556666553
No 326
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.62 E-value=1.1e+03 Score=25.80 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhH
Q 001759 855 AAIKIQQKYRGW 866 (1017)
Q Consensus 855 AAv~IQk~~Rg~ 866 (1017)
+|--+++.++..
T Consensus 72 ~~de~er~~k~l 83 (237)
T PF00261_consen 72 RADESERARKVL 83 (237)
T ss_dssp HHHHHCHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334433333
No 327
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.56 E-value=3.1e+02 Score=25.51 Aligned_cols=60 Identities=17% Similarity=0.030 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001759 941 YEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 941 ~d~L~~~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el 1003 (1017)
.|-+.+...+...+++..-.++....=.+++|+.+. .++...+..+...+.++..|+.+.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE---~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLE---KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH---HHHHHHHHHhhccHHHHHHHHHhh
Confidence 345555666666666666666666666777777766 455666666777777777777653
No 328
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.56 E-value=6.2e+02 Score=27.73 Aligned_cols=33 Identities=3% Similarity=-0.148 Sum_probs=15.4
Q ss_pred HHHhhhhhhccCcchHHHHhhhHhHHHHHHHhh
Q 001759 982 FENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYV 1014 (1017)
Q Consensus 982 ~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~ 1014 (1017)
+.++....++++..+..|...+..++.++..+.
T Consensus 108 ~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 108 LQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555554444443
No 329
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.51 E-value=1.1e+02 Score=24.96 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhh
Q 001759 969 PEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLN 1003 (1017)
Q Consensus 969 ~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el 1003 (1017)
..++..|..++.++...+.+...+..++..|+..+
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666666666666666666554
No 330
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.51 E-value=1.2e+02 Score=26.63 Aligned_cols=27 Identities=0% Similarity=-0.205 Sum_probs=12.4
Q ss_pred HHHHHhhhhhhccCcchHHHHhhhHhH
Q 001759 980 AKFENFKMCDDGSGLLSQGEDSLNGPT 1006 (1017)
Q Consensus 980 ~e~~~ak~~~~~~~~~~~~Lk~el~~l 1006 (1017)
.++.+.+.++++++.++++|+.+++.+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444555555555444
No 331
>PRK10698 phage shock protein PspA; Provisional
Probab=21.46 E-value=1.1e+03 Score=25.73 Aligned_cols=36 Identities=6% Similarity=-0.160 Sum_probs=16.2
Q ss_pred HHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 980 AKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 980 ~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
.++...+...++++..+..|+..|..+|.+...++|
T Consensus 106 ~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 106 HEVTLVDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444443
No 332
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=21.29 E-value=1.6e+03 Score=29.16 Aligned_cols=142 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc
Q 001759 858 KIQQKYRGWKGRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVVWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASENEK 937 (1017)
Q Consensus 858 ~IQk~~Rg~~~Rk~fl~~R~~aV~IQa~~Rg~qaRK~yk~l~~Sv~~lek~i~rwrrkr~~Lr~~~~e~~~~~~~~~~~~ 937 (1017)
.|=+..+.-..+++|+.-.+..+ -..+.+-..+.-+.-.|+...+.|..++..|-.-..+.+..+ .+.
T Consensus 229 ~vl~ev~QLss~~q~ltp~rk~~--------s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelV----k~~ 296 (1265)
T KOG0976|consen 229 KVLKEVMQLSSQKQTLTPLRKTC--------SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELV----KEL 296 (1265)
T ss_pred HHHHHHHHHHHhHhhhhhHhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHH
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHh
Q 001759 938 TDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAY 1013 (1017)
Q Consensus 938 ~~~~d~L~~~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~ 1013 (1017)
..+.+.+++.+.++-.+.++|..-|... .++..+|.--++.++.++|-..+......++|..+-..+-......
T Consensus 297 qeeLd~lkqt~t~a~gdseqatkylh~e--nmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i 370 (1265)
T KOG0976|consen 297 QEELDTLKQTRTRADGDSEQATKYLHLE--NMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSI 370 (1265)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHH
No 333
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.20 E-value=1.8e+02 Score=30.02 Aligned_cols=18 Identities=0% Similarity=-0.348 Sum_probs=6.9
Q ss_pred hhccCcchHHHHhhhHhH
Q 001759 989 DDGSGLLSQGEDSLNGPT 1006 (1017)
Q Consensus 989 ~~~~~~~~~~Lk~el~~l 1006 (1017)
+..++.++..|...|..|
T Consensus 118 i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 118 IEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444443333
No 334
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=21.20 E-value=2e+02 Score=33.39 Aligned_cols=45 Identities=7% Similarity=-0.045 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 968 NPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
+...+.+|...+.++..++++++..+..+..++..++.++.++..
T Consensus 139 g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 183 (370)
T PRK11578 139 QAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDY 183 (370)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666666666666666666666666666666666543
No 335
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=21.11 E-value=1.6e+02 Score=30.38 Aligned_cols=17 Identities=0% Similarity=-0.228 Sum_probs=8.6
Q ss_pred chHHHHhhhHhHHHHHH
Q 001759 995 LSQGEDSLNGPTKDNLH 1011 (1017)
Q Consensus 995 ~~~~Lk~el~~lk~~l~ 1011 (1017)
-+++|+.+++.|+++.+
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45555555555554444
No 336
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.08 E-value=1.2e+03 Score=29.02 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=8.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhh
Q 001759 968 NPEARDQYMRMVAKFENFKMC 988 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~~~ak~~ 988 (1017)
-..||+++.+++.++...|-.
T Consensus 409 E~~Ar~~l~~~~~~l~~ikR~ 429 (560)
T PF06160_consen 409 EKEAREKLQKLKQKLREIKRR 429 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 337
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=21.03 E-value=6.2e+02 Score=33.70 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=9.3
Q ss_pred EEeecCCCCCcee
Q 001759 494 IRCQAPSHAAGRV 506 (1017)
Q Consensus 494 LrC~~Pph~pG~V 506 (1017)
+-|..|||.|+-|
T Consensus 183 ~aT~Ipphnl~ev 195 (957)
T PRK13979 183 LATNIPPHNLKEV 195 (957)
T ss_pred eecCCCCCCHHHH
Confidence 5677788877655
No 338
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=20.97 E-value=2.9e+02 Score=31.71 Aligned_cols=15 Identities=7% Similarity=-0.179 Sum_probs=5.8
Q ss_pred cHHHHHHHHHHHHHH
Q 001759 968 NPEARDQYMRMVAKF 982 (1017)
Q Consensus 968 ~~~AR~qyrrl~~e~ 982 (1017)
+...+.+|.+.+.++
T Consensus 147 g~vS~~~~~~a~~~~ 161 (346)
T PRK10476 147 GYVSAQQVDQARTAQ 161 (346)
T ss_pred CCcCHHHHHHHHHHH
Confidence 333334444433333
No 339
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=20.63 E-value=1.6e+03 Score=31.97 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHH
Q 001759 899 VWSVSIVEKAILRWRRRGSGLRGFRVGNSTANVASENEKTDEYEFLRIGRKQKFAGVEKALERVKSMVRNPEARDQYMRM 978 (1017)
Q Consensus 899 ~~Sv~~lek~i~rwrrkr~~Lr~~~~e~~~~~~~~~~~~~~~~d~L~~~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl 978 (1017)
...+..++--.-+|+.+...|..-.... ...+|.-|+..-.+++..++..-. ...++...+.++
T Consensus 1277 ~ael~~l~~e~~~wK~R~q~L~~k~k~~----------d~~~~~kL~~ei~~Lk~el~~ke~------~~~el~~~~~~~ 1340 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQRNQDLLEKYKDS----------DKNDYEKLKSEISRLKEELEEKEN------LIAELKKELNRL 1340 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC----------CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 4455668888889999988886443332 234455555544444444432222 223334445555
Q ss_pred HHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhh
Q 001759 979 VAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVA 1015 (1017)
Q Consensus 979 ~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~ 1015 (1017)
+ +++|..++.+..+...+..++.++++...+|.+
T Consensus 1341 q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~ 1374 (1822)
T KOG4674|consen 1341 Q---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAA 1374 (1822)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 445555666666666666666666665555544
No 340
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.34 E-value=3.7e+02 Score=32.94 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhh
Q 001759 951 KFAGVEKALERVKSM 965 (1017)
Q Consensus 951 ~e~~~~~A~~rVqs~ 965 (1017)
...|+.+.+..+|-+
T Consensus 418 Y~~RI~eLt~qlQ~a 432 (518)
T PF10212_consen 418 YMSRIEELTSQLQHA 432 (518)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 341
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.22 E-value=2.2e+03 Score=28.84 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=13.0
Q ss_pred CeecceeeeeCCeEEeecCCC
Q 001759 481 EIEVPAEVLTDNVIRCQAPSH 501 (1017)
Q Consensus 481 d~~vpae~~~~gvLrC~~Pph 501 (1017)
++.|+=+++..|+=.|+.-.|
T Consensus 100 EIsVtRqIv~gG~~KylINGh 120 (1174)
T KOG0933|consen 100 EISVTRQIVVGGTNKYLINGH 120 (1174)
T ss_pred eeEEEEEEEecCceeEEEcCe
Confidence 356666677677666665544
No 342
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.13 E-value=4.5e+02 Score=28.03 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHHHHhhhhhhccCcchHHHHhhhHhHHHHHHH
Q 001759 939 DEYEFLRIGRKQKFAGVEKALERVKSMV-RNPEARDQYMRMVAKFENFKMCDDGSGLLSQGEDSLNGPTKDNLHA 1012 (1017)
Q Consensus 939 ~~~d~L~~~rkq~e~~~~~A~~rVqs~~-r~~~AR~qyrrl~~e~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~ 1012 (1017)
++...+...++.++.++.+.-......- ...++.+.+.+++.+....+...+....++..|+.....+++++..
T Consensus 103 ~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 103 DDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 343
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.12 E-value=1.1e+03 Score=28.70 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001759 869 RKDFLKIRNHIVKLQAHVRGH 889 (1017)
Q Consensus 869 Rk~fl~~R~~aV~IQa~~Rg~ 889 (1017)
+..|...++.+-.+++.+...
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l 193 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHI 193 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 344
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.09 E-value=3.3e+02 Score=25.23 Aligned_cols=36 Identities=11% Similarity=-0.080 Sum_probs=26.9
Q ss_pred HHHhhhhhhccCcchHHHHhhhHhHHHHHHHhhhcC
Q 001759 982 FENFKMCDDGSGLLSQGEDSLNGPTKDNLHAYVADQ 1017 (1017)
Q Consensus 982 ~~~ak~~~~~~~~~~~~Lk~el~~lk~~l~~~~~~~ 1017 (1017)
.+..+..+++++.....+..++..++.+|.+.+.+|
T Consensus 71 ~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~q 106 (106)
T PF01920_consen 71 IEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQQ 106 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344666677788888888888888888888877765
No 345
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=20.05 E-value=2.3e+02 Score=33.17 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHH
Q 001759 947 GRKQKFAGVEKALERVKSMVRNPEARDQYMRMVAK 981 (1017)
Q Consensus 947 ~rkq~e~~~~~A~~rVqs~~r~~~AR~qyrrl~~e 981 (1017)
...+++..+.+|.. +...|+++|+|++.-
T Consensus 102 ~~~~a~a~l~~a~a------~l~~a~~~~~R~~~L 130 (385)
T PRK09578 102 ARDAAAGALAKAEA------AHLAALDKRRRYDDL 130 (385)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 34444444444432 445667777777643
Done!