Query 001759
Match_columns 1017
No_of_seqs 632 out of 4255
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 16:30:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001759.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1056-1059//hhsearch_pdb/001759hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxk_A Camta1, calmodulin bind 1.0 1 1 182.1 10.0 90 436-531 4-93 (95)
2 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 177.7 13.6 112 792-911 759-876 (1080)
3 4gpm_A Engineered protein OR26 1.0 1 1 176.7 18.8 150 614-776 7-160 (169)
4 4b93_B Ankyrin repeat domain-c 1.0 1 1 168.9 14.9 156 613-780 54-214 (269)
5 4b93_B Ankyrin repeat domain-c 1.0 1 1 168.3 11.2 144 609-765 84-227 (269)
6 4gpm_A Engineered protein OR26 1.0 1 1 166.3 14.1 128 609-743 35-162 (169)
7 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 162.1 20.2 145 609-765 22-166 (351)
8 1oy3_D Transcription factor in 1.0 1 1 161.7 16.6 153 612-776 46-249 (282)
9 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 161.5 15.0 130 613-749 134-272 (497)
10 2rfm_A Putative ankyrin repeat 1.0 1 1 161.5 12.5 154 608-774 32-189 (192)
No 1
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=1.00 E-value=1 Score=182.11 Aligned_cols=90 Identities=33% Similarity=0.700 Sum_probs=82.8
Q ss_pred CCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCEECCEEEEECCEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 79618897605853369963999980278987779998459973990022066427758943589998301089961897
Q 001759 436 EQLFSIRDFSPDWAYSGAETKVLIIGMFLGTKKLSSDTKWGCMFGEIEVPAEVLTDNVIRCQAPSHAAGRVPFYITGSNR 515 (1017)
Q Consensus 436 ~q~f~I~dvsP~w~~~~ggtkVlV~G~~~~~~~~~~~~~~~c~FGd~~vpae~~~~gvL~C~~Pph~pG~Vpl~Vt~~n~ 515 (1017)
.-.+.|+||+|+|||.+|||||+|+|.||.. ..+|.||||+++||++++++|+|+|++|||.||.|+|+|+++++
T Consensus 4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~-----gs~~~~~fG~~~vpa~~~s~~vl~C~tPp~~~G~v~~~v~~d~~ 78 (95)
T 2cxk_A 4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQEA-----SNNYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQ 78 (95)
T ss_dssp -CCSCCCEEECSEECTTCCCEEEEESSCCCC-----SSCEEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEETTE
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCCC-----CCCEEEEECCEEEEEEEEECCEEEEEECCCCCCEEEEEEEECCE
T ss_conf 8847988978785447999999999378789-----96289999999776899679999999558887268699999990
Q ss_pred CCCCCCEEEEEECCCC
Q ss_conf 4467511245405988
Q 001759 516 LACSEVREFEYREKPS 531 (1017)
Q Consensus 516 ~~cSEv~~FEYr~~~~ 531 (1017)
.. |+.++|||++.+.
T Consensus 79 ~~-s~~~~FeY~~~Pt 93 (95)
T 2cxk_A 79 II-SNSVVFEYKSGPS 93 (95)
T ss_dssp EC-SCCEEEEECCC--
T ss_pred EC-CCCEEEEEECCCC
T ss_conf 34-8863889867998
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=177.67 Aligned_cols=112 Identities=24% Similarity=0.250 Sum_probs=82.5
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHH-HHH-HHHHHHHHHHHHHHHHH
Q ss_conf 48999--758899999999997866664300368825589999997000111111010-677-99999999999977699
Q 001759 792 LAAVR--KSAHAAALIQQAFRVRSFRHRQSIQSSDDVSEVSVDLVALGSLNKVSKMIH-FED-YLHFAAIKIQQKYRGWK 867 (1017)
Q Consensus 792 LsAvR--~A~~AA~~IQ~aFR~~~~R~k~l~~~~~~~~~~~~sila~q~~~k~~~~~~-~~~-~~~~AAi~IQk~~Rg~~ 867 (1017)
|...| ....++..||+.||+|..|+++ .....+++.+|+.+|+..+++ +.. +...||+.||+.||||+
T Consensus 759 LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~--------~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~ 830 (1080)
T 2dfs_A 759 LEKIRADKLRAACIRIQKTIRGWLMRKKY--------MRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYV 830 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 77778888887777888887788999985--------0127789999999999887620221220046777878875499
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf 99999999989999998787799999999999--999999999999
Q 001759 868 GRKDFLKIRNHIVKLQAHVRGHQVRKQYKKVV--WSVSIVEKAILR 911 (1017)
Q Consensus 868 ~Rk~fl~~R~~vV~IQa~~Rg~~aRK~yk~l~--~SV~~lek~i~r 911 (1017)
+||.|..+|.++|+||++|||+++|++|+.+. .++..+|+.+++
T Consensus 831 ~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg 876 (1080)
T 2dfs_A 831 VRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG 876 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999988889999999889999999999987788899999999
No 3
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=176.66 Aligned_cols=150 Identities=26% Similarity=0.346 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Q ss_conf 99999985289999999993999998558999829999999299544799884899987447899855668883199999
Q 001759 614 LIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREET 693 (1017)
Q Consensus 614 ll~~a~~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~ei 693 (1017)
.|..+++.+..+ +++.|++.|+++|.+|..|.||||+|+..++..+++.|+..|++++.+|..|+||||+|+..|+.++
T Consensus 7 ~L~~Aa~~G~~~-~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 7 RLIEAAENGNKD-RVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHHH
T ss_conf 999999958999-9999998789988849998989999998499999999983153113303579999999999397999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH----HHHHH
Q ss_conf 99999749999997899999999998999999639299999999806888876786555765034999975----99999
Q 001759 694 VIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA----EKANE 769 (1017)
Q Consensus 694 V~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~Lle~Ga~~~la~l~l~d~~~G~Taa~ia~----~~~ve 769 (1017)
+++|++.|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++++. .++++
T Consensus 86 v~~Ll~~gadvn~~d------~~G~TpLh~A~~~g~~~~v~~Ll~~g-----ad~~~~d~~-G~TpL~~A~~~g~~~iv~ 153 (169)
T 4gpm_A 86 VKLLISKGADVNAKD------SDGRTPLHHAAENGHKEVVKLLISKG-----ADVNTSDSD-GRTPLDLAREHGNEEVVK 153 (169)
T ss_dssp HHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTT-SCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHCCCHHHHH
T ss_conf 999998769999879------99998999999859899999999869-----974156999-999999999868999999
Q ss_pred HHHHCCC
Q ss_conf 9998198
Q 001759 770 TAAQIGV 776 (1017)
Q Consensus 770 ~L~e~~a 776 (1017)
.|++.||
T Consensus 154 ~Ll~~GA 160 (169)
T 4gpm_A 154 LLEKQGG 160 (169)
T ss_dssp HHHTC--
T ss_pred HHHHCCC
T ss_conf 9998799
No 4
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=168.89 Aligned_cols=156 Identities=22% Similarity=0.216 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Q ss_conf 99999998528999999999399999855899982999999929954479988489998744789985566888319999
Q 001759 613 KLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYFGREE 692 (1017)
Q Consensus 613 ~ll~~a~~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~G~~e 692 (1017)
+.++.+........++..|++.|+++|..|..|+||||+|+..|+.+++++|+..|++++.++..|.||+|+|+..++.+
T Consensus 54 t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~ 133 (269)
T 4b93_B 54 HPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133 (269)
T ss_dssp ---------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred CHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 89999998499899999999879998876999999999999849699999998659986755789998330000127299
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH----HHHHH
Q ss_conf 99999974999999789999999999899999963929999999980688887678655576503499997----59999
Q 001759 693 TVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKAN 768 (1017)
Q Consensus 693 iV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~Lle~Ga~~~la~l~l~d~~~G~Taa~ia----~~~~v 768 (1017)
++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.||++.+ ..+++
T Consensus 134 ~~~~Ll~~g~~~n~~d------~~g~TpL~~A~~~g~~~~v~~Ll~~g-----advn~~~~~-g~t~Lh~A~~~g~~~~v 201 (269)
T 4b93_B 134 VVKCLLDSNAKPNKKD------LSGNTPLIYACSGGHHELVALLLQHG-----ASINASNNK-GNTALHEAVIEKHVFVV 201 (269)
T ss_dssp HHHHHHHTTCCSCCCC------TTCCCHHHHHHHTTCGGGHHHHHHTT-----CCTTCBCTT-SCBHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHCCCHHHH
T ss_conf 9999998799988778------99999999999878999999999787-----997832147-88389999986889999
Q ss_pred HHHHHCCC-CCCC
Q ss_conf 99998198-7899
Q 001759 769 ETAAQIGV-QSDG 780 (1017)
Q Consensus 769 e~L~e~~a-~~~~ 780 (1017)
+.|++.++ ++..
T Consensus 202 ~~Ll~~Gad~~~~ 214 (269)
T 4b93_B 202 ELLLLHGASVQVL 214 (269)
T ss_dssp HHHHHTTCCSCCC
T ss_pred HHHHHCCCCCCCC
T ss_conf 9999878899886
No 5
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=168.28 Aligned_cols=144 Identities=21% Similarity=0.197 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 45789999999852899999999939999985589998299999992995447998848999874478998556688831
Q 001759 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 609 ~~~~~ll~~a~~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~ 688 (1017)
....++++.++..+.. -+++.|++.|++++..+..|.||+|+|+..++..++++|+..|+++|.+|..|+||||+||..
T Consensus 84 ~~G~TpLh~A~~~g~~-~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 84 QDGSSPLHVAALHGRA-DLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TTSCCHHHHHHHTTCT-THHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred CCCCCHHHHHHHCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 9999999999984969-999999865998675578999833000012729999999987999887789999999999987
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999997499999978999999999989999996392999999998068888767865557650349999759
Q 001759 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 689 G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~Lle~Ga~~~la~l~l~d~~~G~Taa~ia~~ 765 (1017)
|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.| +++++++.. |.||++++..
T Consensus 163 g~~~~v~~Ll~~gadvn~~~------~~g~t~Lh~A~~~g~~~~v~~Ll~~G-----ad~~~~d~~-G~TpL~~A~~ 227 (269)
T 4b93_B 163 GHHELVALLLQHGASINASN------NKGNTALHEAVIEKHVFVVELLLLHG-----ASVQVLNKR-QRTAVDCAEQ 227 (269)
T ss_dssp TCGGGHHHHHHTTCCTTCBC------TTSCBHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCTT-SCCSGGGSCT
T ss_pred CCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHH
T ss_conf 89999999997879978321------47883899999868899999999878-----899886999-9999999883
No 6
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=166.25 Aligned_cols=128 Identities=26% Similarity=0.326 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 45789999999852899999999939999985589998299999992995447998848999874478998556688831
Q 001759 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 609 ~~~~~ll~~a~~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~ 688 (1017)
....++++.++..+.. .++..+++.|++++.+|..|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..
T Consensus 35 ~~g~t~l~~a~~~~~~-~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~ 113 (169)
T 4gpm_A 35 SDGRTPLHHAAENGHK-EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 113 (169)
T ss_dssp TTSCCHHHHHHHTTCH-HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCCHHHHHHHCCCH-HHHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 9989899999984999-999999831531133035799999999993979999999987699998799999899999985
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 9999999999749999997899999999998999999639299999999806888
Q 001759 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSS 743 (1017)
Q Consensus 689 G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~Lle~Ga~~ 743 (1017)
|+.+++++|++.|++++..+ ..|.|||++|+..|+.+++++|+++|++.
T Consensus 114 g~~~~v~~Ll~~gad~~~~d------~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 114 GHKEVVKLLISKGADVNTSD------SDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred CCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 98999999998699741569------99999999999868999999999879990
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=162.11 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 45789999999852899999999939999985589998299999992995447998848999874478998556688831
Q 001759 609 NSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASYF 688 (1017)
Q Consensus 609 ~~~~~ll~~a~~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~~ 688 (1017)
......++.++..+..+.+...+...+.+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 32400599999839989999999864888655799998899999985999999999976999976179998089999977
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999997499999978999999999989999996392999999998068888767865557650349999759
Q 001759 689 GREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAAE 765 (1017)
Q Consensus 689 G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~Lle~Ga~~~la~l~l~d~~~G~Taa~ia~~ 765 (1017)
|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.| ++++..+.. |.++...+..
T Consensus 102 g~~~iv~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~-g~~~l~~a~~ 166 (351)
T 3utm_A 102 GHYEVTELLLKHGACVNAMD------LWQFTPLHEAASKNRVEVCSLLLSHG-----ADPTLVNCH-GKSAVDMAPT 166 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCC------TTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTT-SCCHHHHCSS
T ss_pred CCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCCHHHHHH
T ss_conf 88999999997799999778------88998999999749999999999769-----998633678-9862377753
No 8
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=1.00 E-value=1 Score=161.68 Aligned_cols=153 Identities=21% Similarity=0.167 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---------------------
Q ss_conf 89999999852899999999939999985589998299999992995447998848999---------------------
Q 001759 612 DKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVS--------------------- 670 (1017)
Q Consensus 612 ~~ll~~a~~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gad--------------------- 670 (1017)
.++++.++..+.. -+++.|++.|++++..|..|.||||+|+..|+.+++++|+..|++
T Consensus 46 ~t~L~~A~~~g~~-~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (282)
T 1oy3_D 46 QTALHLAAILGEA-STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124 (282)
T ss_dssp CCHHHHHHHHTCH-HHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------
T ss_pred CCHHHHHHHCCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHH
T ss_conf 8799999986999-999999986999887798999999999873884055764234777722467777523434585011
Q ss_pred --------------------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf --------------------------874478998556688831999999999974999999789999999999899999
Q 001759 671 --------------------------PNFRDARGRTALHWASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLA 724 (1017)
Q Consensus 671 --------------------------vn~~D~~G~TPLH~Aa~~G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlA 724 (1017)
++.++..|+||||+|+..|+.+++++|++.|++++..++ ..|.||||+|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~~g~tpL~~A 199 (282)
T 1oy3_D 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP-----TCGRTPLHLA 199 (282)
T ss_dssp -------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-----TTCCCHHHHH
T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-----CCCCCHHHHH
T ss_conf 00222013565300000233555405777678996899999974999999999983898788887-----7896899999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHHCCC
Q ss_conf 963929999999980688887678655576503499997----5999999998198
Q 001759 725 SSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALA----AEKANETAAQIGV 776 (1017)
Q Consensus 725 a~~Gh~~iv~~Lle~Ga~~~la~l~l~d~~~G~Taa~ia----~~~~ve~L~e~~a 776 (1017)
+..|+.+++++|++.| ++++.++.. |.||++.+ ..++++.|++.++
T Consensus 200 ~~~~~~~~v~~Ll~~g-----ad~~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~ga 249 (282)
T 1oy3_D 200 VEAQAASVLELLLKAG-----ADPTARMYG-GRTPLGSALLRPNPILARLLRAHGA 249 (282)
T ss_dssp HHTTCHHHHHHHHHTT-----CCTTCCCTT-SCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 8839899999999759-----998664469-9978999998499179999998499
No 9
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=161.51 Aligned_cols=130 Identities=25% Similarity=0.278 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCCHHHHHHH---CCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 99999998528999999999399999855------8999829999999---29954479988489998744789985566
Q 001759 613 KLIQNLLRNRLCEWLVWKIHEGGKGPNVI------DDGGQGVVHLAAA---LGYEWAMRPIIATGVSPNFRDARGRTALH 683 (1017)
Q Consensus 613 ~ll~~a~~~~l~e~Li~~Lle~Ga~in~~------D~~G~TpLHlAA~---~G~~~~V~~LL~~Gadvn~~D~~G~TPLH 683 (1017)
..++.++..+..+ .+..|++.|+++|.. |..|.||||+|+. .|+.+++++|+..|+++|.+|..|+||||
T Consensus 134 ~~L~~A~~~g~~~-~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 134 QRLWTAICNRDLL-SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHTCHH-HHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHCCCHH-HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 9999988635899-999998606653577777543455505889999860156479999999749997760899995999
Q ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 888319999999999749999997899999999998999999639299999999806888876786
Q 001759 684 WASYFGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLT 749 (1017)
Q Consensus 684 ~Aa~~G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~Lle~Ga~~~la~l~ 749 (1017)
+|+..|+.+++++|+++||++++.+ ..|.||||+|+..|+.+++++|+++|++.....+.
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d------~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h 272 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVN------EAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCC------TTCCCHHHHHHHTTCHHHHHHHHHTCC--------
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 9998098989999997699987819------89897999999819799999999818998898611
No 10
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=1.00 E-value=1 Score=161.50 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 84578999999985289999999993999998558999829999999299544799884899987447899855668883
Q 001759 608 PNSRDKLIQNLLRNRLCEWLVWKIHEGGKGPNVIDDGGQGVVHLAAALGYEWAMRPIIATGVSPNFRDARGRTALHWASY 687 (1017)
Q Consensus 608 ~~~~~~ll~~a~~~~l~e~Li~~Lle~Ga~in~~D~~G~TpLHlAA~~G~~~~V~~LL~~Gadvn~~D~~G~TPLH~Aa~ 687 (1017)
+....++++.++..+..+ +++.|++.|++++..|..|.||||+|+..|+.+++++|+..|++++.+|..|+||||+|+.
T Consensus 32 d~~g~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 110 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMEN-AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110 (192)
T ss_dssp CTTCCCHHHHHHHHTCGG-GHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 789998999999939999-9999998321246546568349999998497999999998799999878789969999998
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH---
Q ss_conf 19999999999749999997899999999998999999639299999999806888876786555765034999975---
Q 001759 688 FGREETVIMLVKLGAAPGAVEDPTPAFPGGQTAADLASSRGHKGIAGYLAEADLSSHLSSLTVNENGMDNVAAALAA--- 764 (1017)
Q Consensus 688 ~G~~eiV~~LL~~GA~~~~~dd~~~~d~~G~TPLhlAa~~Gh~~iv~~Lle~Ga~~~la~l~l~d~~~G~Taa~ia~--- 764 (1017)
.|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.| ++++.++.. |.||++.+.
T Consensus 111 ~~~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~-g~t~l~~A~~~~ 178 (192)
T 2rfm_A 111 FGYSEMSYFLLEHGANVNDRN------LEGETPLIVASKYGRSEIVKKLLELG-----ADISARDLT-GLTAEASARIFG 178 (192)
T ss_dssp HTCHHHHHHHHHTTCCSSCCC------TTCCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCBCTT-SCBHHHHHHHTT
T ss_pred CCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHCC-----CCCCCCCCC-CCCHHHHHHHHC
T ss_conf 297999999997799988879------99998999999819999999999879-----998876889-999999999939
Q ss_pred -HHHHHHHHHC
Q ss_conf -9999999981
Q 001759 765 -EKANETAAQI 774 (1017)
Q Consensus 765 -~~~ve~L~e~ 774 (1017)
.+.++.|.+.
T Consensus 179 ~~~~v~~Ll~~ 189 (192)
T 2rfm_A 179 RQEVIKIFTEV 189 (192)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHC
T ss_conf 69999999864
Done!