BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001760
(1017 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2
Length = 752
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 161/518 (31%), Positives = 248/518 (47%), Gaps = 34/518 (6%)
Query: 41 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 100
+E + GTD+ S LW+ YI +E Q + + V IY R+L P Q ++F FK+
Sbjct: 263 YEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLCIPTQLYSQHFQKFKDHV 322
Query: 101 ASRPLSELRTAEEVDAAAVAVAAAPSETG---AEVKANEEEVQPDATEQTSKPVSAGLTE 157
S + EE + V +A A +G AE +A EE+ P TE P +TE
Sbjct: 323 QSNNPKHFLSEEEFVSLRVELANANKPSGDEDAETEAPGEELPP-GTEDLPDPAKR-VTE 380
Query: 158 AEEL-EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER 216
E + K I R+EM+ + SK FE I+RPYFHVK L T+L NW YLDF
Sbjct: 381 IENMRHKVIETRQEMFNHNEHEVSKRWAFEEGIKRPYFHVKALEKTQLNNWREYLDFELE 440
Query: 217 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 276
+G +VV L+ERCLIACA Y E+WI+Y +E S S + + +A V + + P +H
Sbjct: 441 NGTPERVVVLFERCLIACALYEEFWIKYAKYLE-SYSTEAVRHIYKKACTVHLPKKPNVH 499
Query: 277 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 336
L A F+EQ G ID AR+ + V + PGL ++ ++ERR GN+E+A +L + AI
Sbjct: 500 LLWAAFEEQQGSIDEARSILKAVEV-SVPGLAMVRLRRVSLERRHGNMEEAEALLQDAIT 558
Query: 337 IEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS-KPLLEALIHFESI 395
G+ S++ + +R L V ++ +A+++L+++++ + + K L L S
Sbjct: 559 --NGRNSSES-SFYSVKLARQLVKVQKSIGRAKKVLLEAVEKDETNPKLYLNLLELEYSG 615
Query: 396 QSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDR 454
+ + + D+ L S+ S ++R+ ++FL FG D + A ++
Sbjct: 616 DVQQNEAEII-ACFDRALSSSMALESRITFSQRK------VDFLEDFGSDINTLMAAYEQ 668
Query: 455 HARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYG 514
H RL S KR AE+ SE + + S A M ++ +
Sbjct: 669 HQRLLAEQESF----KRKAEN--GSEEPDAKRQRTDDQSVASGQMMDMQANHAGYNYNNW 722
Query: 515 VQPQTWPPATQAQAQQWNQQAAYGAYSAYGSSYPTPQT 552
Q +W W Q YG Y+ Y YP P T
Sbjct: 723 YQYNSW-----GSQNSWGQYGQYGQYNQY---YPPPPT 752
>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3
Length = 669
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 146/499 (29%), Positives = 230/499 (46%), Gaps = 41/499 (8%)
Query: 41 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 100
FE + GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE
Sbjct: 192 FEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHV 251
Query: 101 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 160
+ +L T E+ +A+ +G + ++ P E + P +TE E
Sbjct: 252 QNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIEN 308
Query: 161 L-EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD 219
+ + I + +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G
Sbjct: 309 MRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGT 368
Query: 220 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 279
+VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+
Sbjct: 369 HERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHMLW 427
Query: 280 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 339
A F+EQ G+I+ AR + E GL ++ ++ERR GNLE+A L + AI K
Sbjct: 428 AAFEEQQGNINEARNILKTF-EECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAK 486
Query: 340 GKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 398
S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 487 SNNESS----FYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDL 542
Query: 399 PKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHAR 457
+ + + DK + + ++R+ +EFL FG D + A D H
Sbjct: 543 KQNEENILNCFDKAVHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQT 596
Query: 458 LFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS------------ 505
L S KR AE+ K A + S Q + G ++
Sbjct: 597 LLKEQDSL----KRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVYNYSAWYQY 652
Query: 506 --QNPWAAGYGVQPQTWPP 522
QNPW G Q +PP
Sbjct: 653 NYQNPWNYG-----QYYPP 666
>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
Length = 641
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 141/446 (31%), Positives = 216/446 (48%), Gaps = 26/446 (5%)
Query: 41 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 100
FE + G D+ S LW+ YI +E Q S V IY+R+L P Q +F FKE
Sbjct: 167 FEHAVVSAGLDFRSDKLWEMYINWETEQGNLSGVTSIYSRLLGIPTQFYSLHFQRFKEHI 226
Query: 101 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 160
E T+E+ +A+ G + P E+ P + TE E
Sbjct: 227 QGHLPREFLTSEKFIELRKELASMTLHGGTN------DDIPSGLEEIKDP-AKRTTEVEN 279
Query: 161 L-EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD 219
+ + I V +E++ + SKI FE I+RPYFHVKPL +L NW YL+F +G
Sbjct: 280 MRHRIIEVHQEIFNLNEHEVSKIWNFEEEIKRPYFHVKPLEKAQLNNWKEYLEFELENGS 339
Query: 220 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 279
++V L+ERC+IACA Y E+WI+Y ME + S++ + RA HV + + P +HL
Sbjct: 340 NERIVILFERCVIACACYEEFWIKYAKYME-NHSVEGVRHVYNRACHVHLAKKPMVHLLW 398
Query: 280 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 339
A F+EQ G+++ AR + + T GL ++ N+ERR GN+++A L E+A+ K
Sbjct: 399 AAFEEQQGNLEEARRILKNIETAIE-GLAMVRLRRVNLERRHGNVKEAEHLLEEAMNKTK 457
Query: 340 GKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 398
S YA + +R L V N KAR++L +++ + + L L+ E
Sbjct: 458 TSSESS----FYAIKLARHLFKVQANVVKARKVLSNAIQKDKENTKLYLNLLEMEYNCDI 513
Query: 399 PKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHAR 457
+ + + DK + S + A R + S +EFL FG D + + H +
Sbjct: 514 KQNEENILAAFDKAI------KSPMSIAMRVKFSQRKVEFLEDFGSDVNKLLDTYNEHQK 567
Query: 458 LFLPHRSTSELRKRHAEDFLASERAK 483
L L H+ ++ KR AE+ L AK
Sbjct: 568 L-LKHQ---DIVKRKAENGLEQPEAK 589
>sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3
Length = 665
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 148/500 (29%), Positives = 234/500 (46%), Gaps = 45/500 (9%)
Query: 41 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 100
FE + GTD+ S LW+ YI +E Q V +Y RIL P Q +F FKE
Sbjct: 190 FEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRFKEHV 249
Query: 101 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 160
+ +L T E+ +A+ +G + ++ P E S + +TE E
Sbjct: 250 QNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDISP--AKLITEIEN 305
Query: 161 L-EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDG 218
+ + I + +EM+ + SK FE I+RPYFHVKPL + +NW YL+F +G
Sbjct: 306 MRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKKNWKEYLEFEIENG 365
Query: 219 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 278
+VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P H+
Sbjct: 366 THERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPMAHML 424
Query: 279 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 338
A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 425 WAAFEEQQGNINEARIILRTF-EECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNA 483
Query: 339 KGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 397
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 484 KSNNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSCD 539
Query: 398 SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHA 456
+ + + DK + + ++R+ +EFL FG D + A D H
Sbjct: 540 LKQNEENILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQ 593
Query: 457 RLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMG-------AYPSS---- 505
L + KR AE+ SE + K+++ S AQ + G AY S
Sbjct: 594 TLL----KEQDTLKRKAEN--GSEEPEEKKAHTEDLSSAQIIDGDLQANQAAYNYSAWYQ 647
Query: 506 ---QNPWAAGYGVQPQTWPP 522
QNPW G Q +PP
Sbjct: 648 YNYQNPWNYG-----QYYPP 662
>sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp39 PE=3 SV=1
Length = 612
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 178/353 (50%), Gaps = 43/353 (12%)
Query: 40 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 99
LF +G VG D+LS P WDKY+E+E Q+ V + R++ P+ Q RYF F +
Sbjct: 129 LFMQGANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQV 188
Query: 100 AASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG----L 155
+ S+P+ +L P + A ++A D T + +K VSAG
Sbjct: 189 SQSQPIQQL---------------LPPDVLASIRA-------DVTREPAKVVSAGSKQIT 226
Query: 156 TEAEELE-------KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWH 208
E ELE + + ++++K + +K FE+ I+RPYFHVK L +L NW
Sbjct: 227 VERGELEIEREMRARIYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWR 286
Query: 209 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHV 267
YLDF E +GDF ++ LYERCLI CA Y E+W RY M A ++ RA+ +
Sbjct: 287 KYLDFEEVEGDFQRICHLYERCLITCALYDEFWFRYARWMSAQPDHLNDVSIIYERASCI 346
Query: 268 F--VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG--- 322
F + R P I + A F+E G+I A+A YQ + T+ PG LEA++ +ERR
Sbjct: 347 FASISR-PGIRVQYALFEESQGNIASAKAIYQSILTQL-PGNLEAVLGWVGLERRNAPNY 404
Query: 323 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 375
+L +A ++ I +GK ++ +L + + + + + E AR + + +
Sbjct: 405 DLTNAHAVLRS--IINEGKCNTGITEVLITEDIKLVWKIEGDIELARNMFLQN 455
>sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646
PE=1 SV=1
Length = 1066
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 134/258 (51%), Gaps = 13/258 (5%)
Query: 162 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 221
++ I+ R +++K + FE I+RPYFHVKPL +L+NW +YLDF GD
Sbjct: 663 DRAISARRKVHKLTVSAVTARWSFEEGIKRPYFHVKPLERAQLKNWKDYLDFEIEKGDRE 722
Query: 222 KVVKLYERCLIACANYPEYWIRYVLCMEA----SGSMDLAHNALARATHVFVKRLPEIHL 277
+V+ L+ERCLIACA Y E+W++ + +E+ SG +DL + RA + P +HL
Sbjct: 723 RVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVRDVYRRACRIHHPDKPSLHL 782
Query: 278 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 337
A F+E + D A Q + + P LL+ + N+ERR G L+ LY+ I
Sbjct: 783 MWAAFEECQMNFDDAAEILQRI-DQRCPNLLQLSYRRINVERRRGALDKCRELYKHYIES 841
Query: 338 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 397
K K + +L + YA RFL+ + + + L +L+ + + AL +
Sbjct: 842 TKNKGIAGSLAIKYA---RFLNKICHDLDAGLAALQQALERDPANTRV--ALQMIDLCLQ 896
Query: 398 SPKQIDFLE--QLVDKFL 413
PK +D E +++DKF+
Sbjct: 897 RPK-VDEQEVVEIMDKFM 913
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 41 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 100
+ER + G ++ S LWD YI +E + + RV IY R+L P Q + +F +F++
Sbjct: 472 YERAVKACGLEFRSDKLWDAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDLI 531
Query: 101 ASRPLSELRTAEEV 114
++ EEV
Sbjct: 532 NQHDVTITLANEEV 545
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 193/448 (43%), Gaps = 57/448 (12%)
Query: 570 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVD-GDSTESASSMLDIHSLVISLNF-- 626
++G FV +YY L ++P+ +H FY+ S++I D G+S +IH+ ++ L+F
Sbjct: 17 EIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQN 76
Query: 627 TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 686
+ I ++SL S NGG+++ V G + K R KF QTFFLA Q GYFVLNDIF FL
Sbjct: 77 CKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSR-KFAQTFFLAEQPNGYFVLNDIFRFL 135
Query: 687 DEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSV----HIED 742
E+ + +P E E+ +A+ YV +++E++ S H +D
Sbjct: 136 REDVEEEEESPDAVE-------------KEKKDVASEPYVNGVQSQEHLPSAKEEGHYQD 182
Query: 743 DAT--DNYSLPEQQQDEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEPQ 800
A +N++ +E + +P E PV +V V + +
Sbjct: 183 PAATENNFATAALISNETDSLNQATLAVPEE-----------PVIQVTEASVPSFVSQQE 231
Query: 801 RKTYASILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVS- 859
+ L + + + A+ + + +D P + SS +G +
Sbjct: 232 NQLQDEALTSNSKNADAIGASDANVATAPKSWADLIARNHPDVKSQASVSSTASTTGQTV 291
Query: 860 -------SHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG 912
+ P + + ++ L SV+V+N+P + ++ FG +K
Sbjct: 292 KGVNADQTQQPTAPYTQSNELLET------SVFVKNIPPETSDVSLKSAMSIFGPVK--A 343
Query: 913 VFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPN-TGSTSRGGRR 971
+ RK A+V+F + VQ A+ +Q+ + IEERR +G ++ G +
Sbjct: 344 IEFARRKGT-----AYVDFVNHECVQLALNKKTLQINNATLNIEERRRLFSGKFNKSGDK 398
Query: 972 GRGRGSYQTDAPRGRFGGRGLGRGSAQD 999
+ +Y R G RG G +++
Sbjct: 399 -KSNDNYNGMKRNFRKGNRGAFDGRSKE 425
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 568 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 623
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 624 LNFTA--IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 678
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 679 LNDIFHFLDE 688
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 568 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 623
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 624 LNFTA--IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 678
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 679 LNDIFHFLDE 688
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 568 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 623
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 624 LNFTA--IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 678
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 679 LNDIFHFLDE 688
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 568 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSM----IRVDGDSTESASSMLDIHSLVIS 623
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 624 LNFTA--IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 678
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 679 LNDIFHFLDE 688
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
>sp|P39682|PRP39_YEAST Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1
Length = 629
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 64/220 (29%)
Query: 41 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 100
FE +G +LS P WDK+IE+E Q+ W V IY I+E P+ Q R+F+S+K+F
Sbjct: 147 FEIAKDLIGKQFLSHPFWDKFIEFEVGQKNWHNVQRIYEYIIEVPLHQYARFFTSYKKFL 206
Query: 101 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 160
+ L+T +D +E
Sbjct: 207 NEK---NLKTTRNIDIVLRKTQTTVNEIW------------------------------- 232
Query: 161 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI-----E 215
+F+SK I++P+F++ + +LENW YL F+
Sbjct: 233 ----------------QFESK-------IKQPFFNLGQVLNDDLENWSRYLKFVTDPSKS 269
Query: 216 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 255
D +F V+ +++RCLI C + W+ Y+ + D
Sbjct: 270 LDKEF--VMSVFDRCLIPCLYHENTWMMYIKWLTKKNISD 307
>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus
GN=G3bp2 PE=1 SV=2
Length = 482
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 568 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVIS 623
P VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLS 67
Query: 624 LNFTA--IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 678
LNF+ +I+ +++ + + GV+V V G + + RKF+QTF LAP+ ++V
Sbjct: 68 LNFSECHTKIRHVDAHATLSDGVVVQVMGLL-SNSGQPERKFMQTFVLAPEGSVPNKFYV 126
Query: 679 LNDIFHFLDE 688
ND+F + DE
Sbjct: 127 HNDMFRYEDE 136
>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii
GN=G3BP2 PE=2 SV=1
Length = 482
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 568 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVIS 623
P VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLS 67
Query: 624 LNFTA--IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 678
LNF+ +I+ +++ + + GV+V V G + + RKF+QTF LAP+ ++V
Sbjct: 68 LNFSECHTKIRHVDAHATLSDGVVVQVMGLL-SNSGQPERKFMQTFVLAPEGSVPNKFYV 126
Query: 679 LNDIFHFLDE 688
ND+F + DE
Sbjct: 127 HNDMFRYEDE 136
>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens
GN=G3BP2 PE=1 SV=2
Length = 482
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 568 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVIS 623
P VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLS 67
Query: 624 LNFTA--IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 678
LNF+ +I+ +++ + + GV+V V G + + RKF+QTF LAP+ ++V
Sbjct: 68 LNFSECHTKIRHVDAHATLSDGVVVQVMGLL-SNSGQPERKFMQTFVLAPEGSVPNKFYV 126
Query: 679 LNDIFHFLDE 688
ND+F + DE
Sbjct: 127 HNDMFRYEDE 136
>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1
PE=3 SV=1
Length = 705
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Query: 207 WHNYLDFIERDGDFNKVVKLYERCL--IACANYPEYWIRYV-LCMEASGSMDLAHNALAR 263
W +YL E +G+ K ++YER + + N ++W RY+ L + + +L + R
Sbjct: 327 WFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMER 386
Query: 264 ATHVF---VKRLP-------EIHLFAARFKEQNGDIDGARAAY-QLVHTETSPGLLEAII 312
A V+ +K +P +I + A F+ + ++D AR Y Q + + + I
Sbjct: 387 ARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQAIGRNPKSKIFDQYI 446
Query: 313 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE--KARQ 370
++E LGN + +LYE+ + I +P + +F L + E +AR
Sbjct: 447 ---HLEIELGNFDRVRTLYEKYLEI---------MPDNCDAWCKFAQLETELGETVRARA 494
Query: 371 ILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 413
I ++ L +P + F + KQ DF++QL K L
Sbjct: 495 IFELAIQQPNLDRPEV-VWKDFIDSEIQLKQFDFVKQLYRKLL 536
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 207 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 266
W Y + ++ + N +++R + + W +Y + G+ A R
Sbjct: 112 WIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFER--- 168
Query: 267 VFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQ---LVHTETSPGLLEAIIKHANMERRL 321
+++ PE + + +F+++ + R ++ LVH ++ IK+ E RL
Sbjct: 169 -WMQWKPEPQAWNSYLKFEQRLKLFENTRLIFEKYILVHP-----YIKTWIKYTKFEERL 222
Query: 322 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 381
GN+E+A +++++AI + + L + +A++ + E+AR I ++DHV
Sbjct: 223 GNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEE----KYKEIERARVIYKYAIDHVPK 278
Query: 382 S--KPLLEALIHFES 394
S K L + +FE
Sbjct: 279 SRAKDLFDTFTNFEK 293
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDIS 935
+ KSV++ N+ T EIEE F+ G+I P F + +K+ +A++EF+D S
Sbjct: 53 DAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKN-----FAYIEFDDSS 107
Query: 936 GVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSY 978
++NA+ + R + + +R N G RG RG++
Sbjct: 108 SIENALVMNGSLFRSRPIVVTAKRTNIPGMGH-GVRGSSRGTF 149
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf4 PE=1 SV=1
Length = 674
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 43/255 (16%)
Query: 150 PVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN 209
P +T+ EEL+++ +K KEF E AIRR + + +W
Sbjct: 37 PPKINITDLEELQEFQG------RKRKEF-------EDAIRR--------NRLAMGHWMR 75
Query: 210 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 269
Y + +F + ++ER L + Y W++Y+ C + +++ A N RA V
Sbjct: 76 YGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRA----V 131
Query: 270 KRLPEIHLFAARF---KEQNGDIDGARAAYQ-LVHTETSPGLLEAIIKHANMERRLGNLE 325
+LP + ++ +E G+I G R ++ + E + I+ MERR E
Sbjct: 132 TQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIR---MERRYHENE 188
Query: 326 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL---VDSLDHVQLS 382
A +YE+ + + H + L +++RF NA RQ+ +D+L L+
Sbjct: 189 RARGIYERFVVV-----HPEVTNWL--RWARFEEECG-NAANVRQVYLAAIDALGQEFLN 240
Query: 383 KPLLEALIHFESIQS 397
+ A FE Q
Sbjct: 241 ERFFIAFAKFEIRQK 255
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDIS 935
+ KSV++ N+ T E+EE F+ G I P F + +K+ +A++EF+D S
Sbjct: 59 DAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKN-----FAYIEFDDSS 113
Query: 936 GVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSY 978
++NA+ + R + + +R N G RG RG++
Sbjct: 114 SIENALVMNGSLFRSRPIVVTAKRTNIPGMGH-GVRGSSRGTF 155
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 571 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI- 629
V S F YYQ + Y + SM+ + + A DI ++SL F +
Sbjct: 8 VASEFCNFYYQQFDSDRTQLGNLYRE-QSMLTFETSQLQGAK---DIVEKLVSLPFQKVA 63
Query: 630 -EIKTINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 683
I T+++ GS NG +LVMV+G + + +++ Q F L P Y+V NDIF
Sbjct: 64 HRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDGNSYYVFNDIF 119
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 616 DIHSLVISLNFTAIE--IKTINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 672
DI ++SL F ++ I T+++ S NG VLVM++G + + ++F Q F L P+
Sbjct: 49 DIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMPE 108
Query: 673 EKGYFVLNDIF 683
Y+V NDIF
Sbjct: 109 GNSYYVFNDIF 119
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 939
E + VYV NLP V E+E+ F +GRIK + K G +AFVEFED ++
Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI-----KSGRGPAFAFVEFEDHRDAED 61
Query: 940 AIQASP-IQLAGRQVYIE 956
A++A + GR++ +E
Sbjct: 62 AVRARDGYEFDGRRIRVE 79
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 882 KSVYVRNLPSTVTAFEIEEE----FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 937
+++YVR S++ EI++E F G + V V ++ G F + SG
Sbjct: 479 RTIYVRGFSSSLGEDEIKKELRSHFSKCGEV--TRVHVPTDRET-GASRGFAYIDLTSGF 535
Query: 938 QNAIQASPIQLAGRQVYIEERRPNTG----STSRGGRRG--RGR--------GSYQTDAP 983
A+Q S ++ G +++EE RP S++R RG RGR G + AP
Sbjct: 536 DEALQLSGSEIGGGNIHVEESRPRDSDEGRSSNRAPARGAPRGRHSDRAPRGGRFSDRAP 595
Query: 984 RGRFGGRGLGRG 995
RGR RG RG
Sbjct: 596 RGRHSDRGAPRG 607
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 616 DIHSLVISLNFTAI--EIKTINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 672
DI ++SL F + I T+++ S NG VLVM++G + E ++F Q F L P+
Sbjct: 49 DIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPE 108
Query: 673 EKGYFVLNDIF 683
Y+V NDIF
Sbjct: 109 GSSYYVYNDIF 119
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 616 DIHSLVISLNFTAIE--IKTINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 672
DI ++SL F ++ I T+++ S NG VLVM++G + E ++F Q F L P
Sbjct: 49 DIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPD 108
Query: 673 EKGYFVLNDIF 683
Y+V NDIF
Sbjct: 109 GNSYYVFNDIF 119
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 35/214 (16%)
Query: 122 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK 181
AAAP + AE E D E+ + + + EEL +Y +K KEF
Sbjct: 14 AAAPVQISAEQLLRE---ATDRQEEALQKPTQRFEDLEELHEYQG------RKRKEF--- 61
Query: 182 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 241
E+ +R F++K NW Y + ++ + ++ER L AN W
Sbjct: 62 ----ESYCQRSGFNLK--------NWLQYAQWELEQKEYARSRSVFERALNLHANKVTLW 109
Query: 242 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGARAAYQ- 297
IRYV S +++ A N L RA V LP + ++ +E G+I G R ++
Sbjct: 110 IRYVEAELKSRNINFARNLLDRA----VTHLPRVDKLWYKYVWVEEMLGNIPGVRQVFER 165
Query: 298 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLY 331
+ + A IK +E+R G + A ++
Sbjct: 166 WMEWQPDEAAWSAFIK---LEQRYGEYDRAREIF 196
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 207 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 244
W +Y+DF E +G+++K LYER L+ A++P+ WI Y
Sbjct: 512 WKSYIDFEEEEGEYDKTRSLYER-LLDKADHPKVWISY 548
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 19/184 (10%)
Query: 206 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA-LARA 264
NW + F E G ++V +++ER + + Y + ++ L + + H+ ARA
Sbjct: 208 NWIKWSKFEEEYGTSDRVREVFERAIEELSKYGDEFVEERLFIAYARYEAKLHDLDRARA 267
Query: 265 THVF-VKRLPE-----IHLFAARFKEQNGDIDGA--------RAAYQLVHTETSPGLLEA 310
+ F ++ LP +H F++Q GD +G R Y+ + E +P +
Sbjct: 268 IYKFGLENLPRSKAMLLHKEYTTFEKQYGDREGVEDVVLSKRRRHYEDLVRE-NPKNYDV 326
Query: 311 IIKHANMERRLGNLEDAFSLYEQAIAI---EKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 367
+A +E G+++ +YE+AIA + K H + L+ ++ + ++N E+
Sbjct: 327 WFDYARLEEASGDIDRTREVYEKAIAQVPPTQAKRHWRRYIYLWIFFALWEETEAKNPER 386
Query: 368 ARQI 371
ARQ+
Sbjct: 387 ARQV 390
>sp|Q6C186|CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CLF1 PE=3 SV=1
Length = 676
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Query: 207 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 266
W Y + +F + ++ER L + + WIRY+ C +++ A N L RA
Sbjct: 69 WMRYAQWELEQREFARARSVFERALEVNSTHVPTWIRYIQCELKEKNINHARNLLDRAV- 127
Query: 267 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 326
+ R+ ++ +E G+I G RA ++ P + A + NME+R +
Sbjct: 128 TLLPRVDKLWFTYVATEETLGNIAGCRAVFERWMHWRPP--VTAWAAYVNMEKRYREFDR 185
Query: 327 AFSLYEQAIAIEKG 340
A + + + + G
Sbjct: 186 ARGILRRYVTVHPG 199
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=clf-1 PE=3 SV=1
Length = 695
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 89/220 (40%), Gaps = 35/220 (15%)
Query: 122 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK 181
A AP + AE E + + QT A L EEL++Y +K KEF
Sbjct: 14 APAPVQISAEQLLREAVDRQEVNLQTPTQRFADL---EELKEYQG------RKRKEF--- 61
Query: 182 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 241
E +RR + L NW Y + +F + ++ER L N + W
Sbjct: 62 ----EDYVRR--------NRVRLSNWLQYAQWELEQKEFARARSVFERALDVHPNNTQLW 109
Query: 242 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGARAAY-Q 297
IRYV + +++ A N L RA V RLP + ++ E GDI G R + +
Sbjct: 110 IRYVQAEIKNRNINHARNLLDRA----VTRLPRVTSLWYQYLYVMEMLGDIPGTRQVFDR 165
Query: 298 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 337
+ + A I+ +E+R G + A ++ A+
Sbjct: 166 WMKWQPDEQAWSAYIR---LEKRYGEFDRAREIFRAFTAV 202
>sp|Q8NJ52|NTF2_DAVTA Nuclear transport factor 2 OS=Davidiella tassiana GN=NTF2 PE=1 SV=1
Length = 125
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 641 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 686
+GG+LV+VSG++ +E R + QTF L P + Y+V ND+F +
Sbjct: 76 SGGILVVVSGALLVEEERRPMSYTQTFQLLPADGAYYVFNDVFRLV 121
>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3
SV=1
Length = 676
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Query: 185 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 244
FE +RR + + NW Y + +F + ++ER L WIRY
Sbjct: 61 FEDYVRRNRLN--------MNNWMRYASWELEQKEFRRARSIFERALDVNPTSVVLWIRY 112
Query: 245 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGARAAYQ-LVH 300
+ + +++ A N L RA + LP + F ++ +E G+I G R ++ +
Sbjct: 113 IESEMRNRNINHARNLLDRAVTI----LPRVDKFWYKYVYMEETLGNIQGTRQVFERWMS 168
Query: 301 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 357
E G A IK +E+R E A +++++ + H + P + +++RF
Sbjct: 169 WEPDEGAWSAYIK---LEKRYNEFERARAIFQRFTIV-----HPE--PRNWIKWARF 215
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 29/236 (12%)
Query: 207 WHNYLDFIERDGDFNKVVKLYERCL--IACANYPEYWIRYV-LCMEASGSMDLAHNALAR 263
W ++ E GD ++V +YER + I + +W RY+ L + + ++ + R
Sbjct: 324 WFDFARLEETSGDPDRVRDIYERAIAQIPPSQEKRHWRRYIYLWIFYAIWEEMEAKDVDR 383
Query: 264 ATHVF---VKRLP-------EIHLFAARFKEQNGDIDGARAAY-QLVHTETSPGLLEAII 312
A ++ +K +P +I L A+F + D+ AR Q + L I
Sbjct: 384 ARQIYTECLKLIPHKKFTFAKIWLLKAQFDIRQMDLQAARKTLGQAIGMCPKDKLFRGYI 443
Query: 313 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL 372
++ER+L +LYE+ IE +SQ+ + YA+ R L ++E+AR I
Sbjct: 444 ---DLERQLFEFVRCRTLYEK--QIEWNPANSQSW-IKYAELERGLD----DSERARAIF 493
Query: 373 VDSLDHVQLSKPLL--EALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAA 426
+D L P L +A I FE + + D + QL ++ L N A
Sbjct: 494 ELGIDQPMLDMPELVWKAYIDFEEYEG---EYDRVRQLYERLLQKTDHVKVWINYA 546
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 185 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 244
FE I +P + L W Y+DF E +G++++V +LYER L+ ++ + WI Y
Sbjct: 493 FELGIDQPMLDMPELV------WKAYIDFEEYEGEYDRVRQLYER-LLQKTDHVKVWINY 545
>sp|Q1RMU5|RBM5_BOVIN RNA-binding protein 5 OS=Bos taurus GN=RBM5 PE=2 SV=1
Length = 815
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 936
DE E K++ +R LP T+T +I E ++F +P V + RK V +AFVEF +
Sbjct: 93 DERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFVEFYHLQD 152
Query: 937 VQNAIQASPIQL 948
+ ++A+ +L
Sbjct: 153 ATSWMEANQKKL 164
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 937
E + +SVYV N+ +A E+E F G I + ++ YA++EF S V
Sbjct: 135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILC-DKFSGHPKGYAYIEFASKSSV 193
Query: 938 QNAIQASPIQLAGRQVYIEERR---PNTGSTSRGGRRGRG-------RGSYQTDAPRGRF 987
Q A++ GR + + +R P ST RGG R +GS Q PR R
Sbjct: 194 QAAVRLDESTFRGRVIKVLPKRTNFPGISSTDRGGLRTHSSSRAAFLQGSLQRK-PRLRP 252
Query: 988 GGRGLGRGSA 997
G+ GRG A
Sbjct: 253 HGQSRGRGRA 262
>sp|Q91YE7|RBM5_MOUSE RNA-binding protein 5 OS=Mus musculus GN=Rbm5 PE=1 SV=1
Length = 815
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 936
DE E K++ +R LP T+T +I E ++F +P V + RK V +AFVEF +
Sbjct: 93 DERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFVEFYHLQD 152
Query: 937 VQNAIQASPIQL 948
+ ++A+ +L
Sbjct: 153 ATSWMEANQKKL 164
>sp|B2GV05|RBM5_RAT RNA-binding protein 5 OS=Rattus norvegicus GN=Rbm5 PE=2 SV=1
Length = 815
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 936
DE E K++ +R LP T+T +I E ++F +P V + RK V +AFVEF +
Sbjct: 93 DERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFVEFYHLQD 152
Query: 937 VQNAIQASPIQL 948
+ ++A+ +L
Sbjct: 153 ATSWMEANQKKL 164
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 OS=Homo sapiens GN=RBM5 PE=1 SV=2
Length = 815
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 877 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISG 936
DE E K++ +R LP T+T +I E ++F +P V + RK V +AFVEF +
Sbjct: 93 DERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFVEFYHLQD 152
Query: 937 VQNAIQASPIQL 948
+ ++A+ +L
Sbjct: 153 ATSWMEANQKKL 164
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis
elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 884 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 943
VYV LPS T+ E+EE F FGRI+ V+V R +AFVE++D+ ++A++A
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIR--KVWVARRPP----GFAFVEYDDVRDAEDAVRA 58
>sp|Q96VN3|NTF2_EMENI Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3
SV=1
Length = 125
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 575 FVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIE--IK 632
FV YYQ + Y D SM+ + + + + +++ + SL F ++ +
Sbjct: 11 FVTFYYQTFDGNRAGLAPLYRD-HSMLTFETSAIQGVAGIIE---KLTSLPFQKVQHQVS 66
Query: 633 TINSLGSW-NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG-YFVLNDIFHFL 686
T+++ S +GG+LV+V+G++ E + QTF L P G YFVLND+F +
Sbjct: 67 TLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLI 122
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 105/254 (41%), Gaps = 37/254 (14%)
Query: 130 AEVKANEEEVQPDATEQTSKPVSA---GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 186
A ++ + E++ +A E+ P SA + + EELE+Y R FE
Sbjct: 14 APIQISAEQLLREAQERQEAPASAPVQKIEDYEELEEYRGRRRS-------------EFE 60
Query: 187 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 246
+RR + + W Y + G+ ++ +YER L ++ W+RY
Sbjct: 61 DRLRRNGLN--------MSTWIKYASWEASQGEMDRCRSIYERALDVEPHHLPLWLRYTE 112
Query: 247 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ-LVHTETSP 305
++ A N RA + + R+ ++ +E G+I G R ++ + E
Sbjct: 113 QELKMRNVQHARNLYDRAVSI-LPRIDQLWYKYVHLEELLGNIPGTRQVFERWMKWEPEE 171
Query: 306 GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 365
A I N+E R L+ A +++E+ + +P + ++++F N
Sbjct: 172 KAWHAYI---NLEVRYDELDRASAIWERCVT-------CHPVPKQWIRWAKFEEDRG-NL 220
Query: 366 EKARQILVDSLDHV 379
EKAR + +LD++
Sbjct: 221 EKARIVFQMALDYI 234
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 116/291 (39%), Gaps = 43/291 (14%)
Query: 121 VAAAPSETGAEVKANEEEVQPDATEQTSK----PVSAGLTEAEELEKYIAVREEMYKKAK 176
VA ++ AEV+ E++ +A E+ + P +T+ EEL Y +K K
Sbjct: 15 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY------KLRKRK 68
Query: 177 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN 236
F+ I T I NW Y + E + + +YER L
Sbjct: 69 TFEDNIRKNRTVI---------------SNWIKYAQWEESLKEIQRARSIYERALDVDYR 113
Query: 237 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGAR 293
W++Y + ++ A N RA + LP ++ F ++ +E G++ GAR
Sbjct: 114 NITLWLKYAEMEMKNRQVNHARNIWDRA----ITTLPRVNQFWYKYTYMEEMLGNVAGAR 169
Query: 294 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 353
++ E P +A + N E R +E A ++YE+ + + ++ + +
Sbjct: 170 QVFER-WMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN-------WIK 220
Query: 354 YSRF--LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQI 402
Y+RF H +A K + V+ + + L A FE Q +++
Sbjct: 221 YARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV 271
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 116/291 (39%), Gaps = 43/291 (14%)
Query: 121 VAAAPSETGAEVKANEEEVQPDATEQTSK----PVSAGLTEAEELEKYIAVREEMYKKAK 176
VA ++ AEV+ E++ +A E+ + P +T+ EEL Y +K K
Sbjct: 15 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY------KLRKRK 68
Query: 177 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN 236
F+ I T I NW Y + E + + +YER L
Sbjct: 69 TFEDNIRKNRTVI---------------SNWIKYAQWEESLKEIQRARSIYERALDVDYR 113
Query: 237 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGAR 293
W++Y + ++ A N RA + LP ++ F ++ +E G++ GAR
Sbjct: 114 NITLWLKYAEMEMKNRQVNHARNIWDRA----ITTLPRVNQFWYKYTYMEEMLGNVAGAR 169
Query: 294 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 353
++ E P +A + N E R +E A ++YE+ + + ++ + +
Sbjct: 170 QVFER-WMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN-------WIK 220
Query: 354 YSRF--LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQI 402
Y+RF H +A K + V+ + + L A FE Q +++
Sbjct: 221 YARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV 271
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 878 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 937
E + +S++V N+ VT +IE+ F++ G+IK + +R Y ++EFE +
Sbjct: 60 EADSRSIFVGNITPDVTPEQIEDHFKDCGQIK-RITLLYDRNTGTPKGYGYIEFESPAYR 118
Query: 938 QNAIQASPIQLAGRQVYIEERRPN 961
+ A+Q + +L G+++ + +R N
Sbjct: 119 EKALQLNGGELKGKKIAVSRKRTN 142
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 939
+ +SVYV N+ +A E+E F G I + N+ D +A++EF V+
Sbjct: 94 DTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILC-NKADGHPKGFAYIEFGSKEFVET 152
Query: 940 AIQASPIQLAGRQVYIEERRPN------TGSTSRGGRRGRG 974
A+ + GRQ+ + +R N T +RG RGRG
Sbjct: 153 ALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRG 193
>sp|Q6FRC6|NTF2_CANGA Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3
SV=1
Length = 125
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 599 SMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSL-GSWNGGVLVMVSGSVKTK 655
SM+ + + A S+++ ++SL F + I T+++ S NG VLVM++G +
Sbjct: 35 SMLTFETSQLQGAKSIVEK---LVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLID 91
Query: 656 EFCRRRKFVQTFFLAPQEKGYFVLNDIF 683
+ ++F Q F L P Y+V NDIF
Sbjct: 92 DEQNPQRFSQVFHLIPDGNSYYVFNDIF 119
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 883 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 942
++++ +LP T EI + F FG + VFV +R C+ FV F++ + Q AIQ
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFV-DRATNQSKCFGFVSFDNPASAQAAIQ 439
Query: 943 A-SPIQLAGRQVYIEERRPN 961
A + Q+ +++ ++ +RP
Sbjct: 440 AMNGFQIGMKRLKVQLKRPK 459
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 880 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 939
+ +SVYV N+ +A E+E F G I + N+ D +A++EF V+
Sbjct: 94 DTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILC-NKADGHPKGFAYIEFGSKEFVET 152
Query: 940 AIQASPIQLAGRQVYIEERRPN------TGSTSRGGRRGRG------------RGSYQTD 981
A+ + GRQ+ + +R N T +RG RGRG RG+ +
Sbjct: 153 ALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAM 212
Query: 982 APRGR 986
RGR
Sbjct: 213 GYRGR 217
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 883 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 942
++++ +LP T EI + F FG + VFV +R C+ FV F++ + Q AIQ
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFV-DRATNQSKCFGFVSFDNPASAQAAIQ 439
Query: 943 A-SPIQLAGRQVYIEERRPN 961
A + Q+ +++ ++ +RP
Sbjct: 440 AMNGFQIGMKRLKVQLKRPK 459
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 883 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 942
++++ +LP T EI + F FG + VFV +R C+ FV F++ + Q AIQ
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFV-DRATNQSKCFGFVSFDNPASAQAAIQ 435
Query: 943 A-SPIQLAGRQVYIEERRPN 961
A + Q+ +++ ++ +RP
Sbjct: 436 AMNGFQIGMKRLKVQLKRPK 455
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4
Length = 848
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 136/337 (40%), Gaps = 53/337 (15%)
Query: 121 VAAAPSETGAEVKANEEEVQPDATEQTSK----PVSAGLTEAEELEKYIAVREEMYKKAK 176
VA ++ AEV+ E++ +A E+ + P +T+ EEL Y +K K
Sbjct: 176 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY------KLRKRK 229
Query: 177 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN 236
F+ I T I NW Y + E + + +YER L
Sbjct: 230 TFEDNIRKNRTVI---------------SNWIKYAQWEESLKEIQRARSIYERALDVDYR 274
Query: 237 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGAR 293
W++Y + ++ A N RA + LP ++ F ++ +E G++ GAR
Sbjct: 275 NITLWLKYAEMEMKNRQVNHARNIWDRA----ITTLPRVNQFWYKYTYMEEMLGNVAGAR 330
Query: 294 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 353
++ E P +A + N E R ++ A ++YE+ + + ++ + +
Sbjct: 331 QVFER-WMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKN-------WIK 381
Query: 354 YSRF--LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDK 411
Y+RF H +A K + V+ + + L A FE Q +++ +++ K
Sbjct: 382 YARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV----RVIYK 437
Query: 412 FLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLI 448
+ + D S +A +EL + F FGD + I
Sbjct: 438 YAL---DRISKQDA---QELFKNYTIFEKKFGDRRGI 468
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 131/310 (42%), Gaps = 50/310 (16%)
Query: 39 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT----RILENPIQQLDRYFS 94
+++ER + + G +++ L+ + ++E Q+E+ RV +IY RI + Q+L + ++
Sbjct: 397 KVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYT 456
Query: 95 SF-KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 153
F K+F R + + + V+ + EVKAN DA + V +
Sbjct: 457 IFEKKFGDRRGIED-----------IIVSKRRFQYEEEVKANPHNY--DAWFDYLRLVES 503
Query: 154 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 213
EAE AVR E+Y++A I R Y W NY +
Sbjct: 504 D-AEAE------AVR-EVYERAIANVPPIQEKRHWKRYIYL------------WINYALY 543
Query: 214 IERDG-DFNKVVKLYERCLIACAN----YPEYWIRYVLCMEASGSMDLAHNALARATHVF 268
E + D + ++Y+ L + + + WI Y ++ LA AL +
Sbjct: 544 EELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTS---- 599
Query: 269 VKRLPEIHLFAA--RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 326
+ + P+ LF + Q + D R Y+ E P + IK A +E LG+++
Sbjct: 600 IGKCPKNKLFKVYIELELQLREFDRCRKLYEKF-LEFGPENCTSWIKFAELETILGDIDR 658
Query: 327 AFSLYEQAIA 336
A ++YE AI+
Sbjct: 659 ARAIYELAIS 668
>sp|Q9P926|NTF2_CANAX Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1
Length = 124
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 638 GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 683
S NG +LVMV+G + E +++ Q F L P Y+V NDIF
Sbjct: 74 ASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPDNGSYYVFNDIF 119
>sp|Q9XJ54|NTF2_ORYSJ Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2
PE=2 SV=1
Length = 122
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 571 VGSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 629
V FV YY+ +P LV Y D S M+ +G A++ I + SL F
Sbjct: 6 VAKAFVEHYYRTFDTNRPALV-SLYQDGS-MLTFEGQQFLGAAA---IAGKLGSLPFAQC 60
Query: 630 --EIKTINSLGSW-NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 683
+I T++ S GG+LV VSGS++T KF Q F L P ++V ND+F
Sbjct: 61 HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMF 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,670,865
Number of Sequences: 539616
Number of extensions: 17572101
Number of successful extensions: 81354
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 787
Number of HSP's that attempted gapping in prelim test: 76716
Number of HSP's gapped (non-prelim): 4146
length of query: 1017
length of database: 191,569,459
effective HSP length: 128
effective length of query: 889
effective length of database: 122,498,611
effective search space: 108901265179
effective search space used: 108901265179
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)