BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001761
(1017 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OLC|X Chain X, Crystal Structure Of The N-Terminal Region Of Topbp1
Length = 298
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 24/232 (10%)
Query: 63 FEDLRAKGCNLLGPQCVLSCAKENRALPKQGFTCC-LAMDGVKVIASGFDVDEKFKIEKL 121
F+ L+ GC ++GPQ V+ C R +P+ V + + + +++ ++ K
Sbjct: 68 FDHLKKLGCRIVGPQVVIFCXHHQRCVPRAEHPVYNXVXSDVTISCTSLEKEKREEVHKY 127
Query: 122 VTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNWLYQCW---NEHRV-- 176
V GG + + V+ +I V + KY A N LKKPI+ +W+ W E ++
Sbjct: 128 VQXXGGRVYRDLNVSVTHLIAGEVGSKKYLVAAN-LKKPILLPSWIKTLWEKSQEKKITR 186
Query: 177 ---VPQESYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPEL-TKKCTHLICDIS 232
+ E +K F G +ICVT + +RKE+++L V++GG+Y +L +CTHLI
Sbjct: 187 YTDINXEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQ-- 244
Query: 233 FTIYFLNFPYTPEGDKFKVAKRWGHIHIINRKWFDQSMARRACLNEESYTVQ 284
P+G K++ AKRW ++H + +WF S+ + C +E Y +
Sbjct: 245 ----------EPKGQKYECAKRW-NVHCVTTQWFFDSIEKGFCQDESIYKTE 285
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 688 PGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKL-TKKVTHLLCKFAGGLKYEAACKW 746
P F CV+ DR ++ L G ++ +L + THL+ + G KYE A +W
Sbjct: 198 PIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKYECAKRW 257
Query: 747 GIPSITSEWIYECVRQN 763
+ +T++W ++ + +
Sbjct: 258 NVHCVTTQWFFDSIEKG 274
>pdb|2XNK|A Chain A, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
pdb|2XNK|B Chain B, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
pdb|2XNK|C Chain C, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
pdb|2XNK|D Chain D, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
Length = 292
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 24/232 (10%)
Query: 63 FEDLRAKGCNLLGPQCVLSCAKENRALPKQGFTCC-LAMDGVKVIASGFDVDEKFKIEKL 121
F+ L+ GC ++GPQ V+ C R +P+ V + + + +++ ++ K
Sbjct: 70 FDHLKKLGCRIVGPQVVIFCXHHQRCVPRAEHPVYNXVXSDVTISCTSLEKEKREEVHKY 129
Query: 122 VTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNWLYQCW---NEHRV-- 176
V GG + + V+ +I V + KY A N LKKPI+ +W+ W E ++
Sbjct: 130 VQXXGGRVYRDLNVSVTHLIAGEVGSKKYLVAAN-LKKPILLPSWIKTLWEKSQEKKITR 188
Query: 177 ---VPQESYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPEL-TKKCTHLICDIS 232
+ E +K F G +ICVT + +RKE+++L V++GG+Y +L +CTHLI
Sbjct: 189 YTDINXEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQ-- 246
Query: 233 FTIYFLNFPYTPEGDKFKVAKRWGHIHIINRKWFDQSMARRACLNEESYTVQ 284
P+G K++ AKRW ++H + +WF S+ + C +E Y +
Sbjct: 247 ----------EPKGQKYECAKRW-NVHCVTTQWFFDSIEKGFCQDESIYKTE 287
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 688 PGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKL-TKKVTHLLCKFAGGLKYEAACKW 746
P F CV+ DR ++ L G ++ +L + THL+ + G KYE A +W
Sbjct: 200 PIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKYECAKRW 259
Query: 747 GIPSITSEWIYECVRQN 763
+ +T++W ++ + +
Sbjct: 260 NVHCVTTQWFFDSIEKG 276
>pdb|2XNH|A Chain A, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
Length = 287
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 24/232 (10%)
Query: 63 FEDLRAKGCNLLGPQCVLSCAKENRALPKQGFTCC-LAMDGVKVIASGFDVDEKFKIEKL 121
F+ L+ GC ++GPQ V+ C R +P+ V + + + +++ ++ K
Sbjct: 68 FDHLKKLGCRIVGPQVVIFCXHHQRCVPRAEHPVYNXVXSDVTISCTSLEKEKREEVHKY 127
Query: 122 VTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNWLYQCW---NEHRV-- 176
V GG + + V+ +I V + KY A N LKKPI+ +W+ W E ++
Sbjct: 128 VQXXGGRVYRDLNVSVTHLIAGEVGSKKYLVAAN-LKKPILLPSWIKTLWEKSQEKKITR 186
Query: 177 ---VPQESYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPEL-TKKCTHLICDIS 232
+ E +K F G +ICVT + +RKE+++L V++GG+Y +L +CTHLI
Sbjct: 187 YTDINXEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQ-- 244
Query: 233 FTIYFLNFPYTPEGDKFKVAKRWGHIHIINRKWFDQSMARRACLNEESYTVQ 284
P+G K++ AKRW ++H + +WF S+ + C +E Y +
Sbjct: 245 ----------EPKGQKYECAKRW-NVHCVTTQWFFDSIEKGFCQDESIYKTE 285
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 688 PGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKL-TKKVTHLLCKFAGGLKYEAACKW 746
P F CV+ DR ++ L G ++ +L + THL+ + G KYE A +W
Sbjct: 198 PIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKYECAKRW 257
Query: 747 GIPSITSEWIYECVRQN 763
+ +T++W ++ + +
Sbjct: 258 NVHCVTTQWFFDSIEKG 274
>pdb|1WF6|A Chain A, The Third Brca1 C-Terminus (Brct) Domain Of Similar To
S.Pombe Rad4+CUT5+ PRODUCT
Length = 132
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 391 LSDCRIVLVGFEASEMRKLVNMVRRGGGSRYVSYNNGLTHIVVGTLSEADKREVRSLASL 450
L CRI L GF ++ KL ++ GGG R+ N +TH++VG + K+ A
Sbjct: 41 LDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHR 100
Query: 451 GIIQVVKSTWLEDC 464
VV + WL +C
Sbjct: 101 --PHVVGAKWLLEC 112
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 100 MDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNV-LAAKYKWALNILK 158
+DG ++ GF + K+ +L+ + GGV + DV+ VIV + K W + +
Sbjct: 41 LDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHR 100
Query: 159 KPIVTVNWLYQCWNEHRVVPQESY 182
+V WL +C+++ ++ +E Y
Sbjct: 101 PHVVGAKWLLECFSKGYMLSEEPY 124
>pdb|2D8M|A Chain A, Solution Structure Of The First Brct Domain Of Dna-Repair
Protein Xrcc1
Length = 129
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 697 VSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLKYEAACKWGIPSITSEWI 756
+S ++ R LR+ LGAK+ T+ THL+C FA KY G + EW+
Sbjct: 30 LSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWV 89
Query: 757 YECVR 761
+C R
Sbjct: 90 LDCHR 94
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 175 RVVPQESYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFT 234
R P+E K+L G+++ ++ R E+ ++ G KY P+ T+ THLIC + T
Sbjct: 13 RAGPEELGKIL--QGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANT 70
Query: 235 IYF 237
+
Sbjct: 71 PKY 73
>pdb|2COU|A Chain A, Solution Structure Of The Second Brct Domain Of Epithelial
Cell Transforming 2
Length = 109
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 181 SYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNF 240
+KV PF ++ +E+ ME++ GG Y P ++CTHLI + + T+ +
Sbjct: 7 GFKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEEN-TVK--DL 63
Query: 241 PYTPEGDKFKVAKR--WGHIHIINR 263
P+ P F V + WG I + R
Sbjct: 64 PFEPSKKLFVVKQEWFWGSIQMDAR 88
>pdb|3PC8|A Chain A, X-Ray Crystal Structure Of The Heterodimeric Complex Of
Xrcc1 And Dna Ligase Iii-Alpha Brct Domains.
pdb|3PC8|B Chain B, X-Ray Crystal Structure Of The Heterodimeric Complex Of
Xrcc1 And Dna Ligase Iii-Alpha Brct Domains
Length = 98
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 110 FDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKP---IVTVNW 166
F DE+ ++ + VTA G L+ + V FVI ++ AL ++ P V W
Sbjct: 19 FPGDERRRLIRYVTAFNGELEDRMNERVQFVITAQEWDPNFEEAL--MENPSLAFVRPRW 76
Query: 167 LYQCWNEHRVVPQESYKVLP 186
+Y C + +++P + Y V+P
Sbjct: 77 IYSCNEKQKLLPHQLYGVVP 96
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 589 KLSTVFRGKIFRFSNSFPEDRRAEIVQWVNQGRGEVVNDDAKQNVHFTIECHGVIPKSAD 648
+L F GK F FP D R ++++V GE + D + V F I P +
Sbjct: 3 ELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGE-LEDRMNERVQFVITAQEWDPNFEE 61
Query: 649 A----SETTYVSSHWIRSCLEDGCLLDVGSHILY 678
A +V WI SC E LL H LY
Sbjct: 62 ALMENPSLAFVRPRWIYSCNEKQKLL---PHQLY 92
>pdb|3QVG|B Chain B, Xrcc1 Bound To Dna Ligase
pdb|3QVG|D Chain D, Xrcc1 Bound To Dna Ligase
Length = 106
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 110 FDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKP---IVTVNW 166
F DE+ ++ + VTA G L+ + V FVI ++ AL ++ P V W
Sbjct: 27 FPGDERRRLIRYVTAFNGELEDRMNERVQFVITAQEWDPNFEEAL--MENPSLAFVRPRW 84
Query: 167 LYQCWNEHRVVPQESYKVLP 186
+Y C + +++P + Y V+P
Sbjct: 85 IYSCNEKQKLLPHQLYGVVP 104
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 589 KLSTVFRGKIFRFSNSFPEDRRAEIVQWVNQGRGEVVNDDAKQNVHFTIECHGVIPKSAD 648
+L F GK F FP D R ++++V GE + D + V F I P +
Sbjct: 11 ELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGE-LEDRMNERVQFVITAQEWDPNFEE 69
Query: 649 A----SETTYVSSHWIRSCLEDGCLLDVGSHILY 678
A +V WI SC E LL H LY
Sbjct: 70 ALMENPSLAFVRPRWIYSCNEKQKLL---PHQLY 100
>pdb|3L46|A Chain A, Crystal Structure Of The Second Brct Domain Of Epithelial
Cell Transforming 2 (Ect2)
pdb|3L46|B Chain B, Crystal Structure Of The Second Brct Domain Of Epithelial
Cell Transforming 2 (Ect2)
Length = 112
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 184 VLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYT 243
V PF ++ +E+ ME++ GGKY P ++CTHL+ + + + P+
Sbjct: 19 VPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIV---KDLPFE 75
Query: 244 PEGDKFKVAKRW 255
P + V + W
Sbjct: 76 PSKKLYVVKQEW 87
>pdb|1CDZ|A Chain A, Brct Domain From Dna-Repair Protein Xrcc1
Length = 96
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 110 FDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKP---IVTVNW 166
F DE+ K+ + VTA G L+ + V FVI ++ AL + P V W
Sbjct: 17 FPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEAL--MDNPSLAFVRPRW 74
Query: 167 LYQCWNEHRVVPQESYKVLP 186
+Y C + +++P + Y V+P
Sbjct: 75 IYSCNEKQKLLPHQLYGVVP 94
Score = 38.1 bits (87), Expect = 0.024, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 589 KLSTVFRGKIFRFSNSFPEDRRAEIVQWVNQGRGEVVNDDAKQNVHFTIECHGVIPKSAD 648
+L F+GK F FP D R +++++V GE + D V F I P +
Sbjct: 1 ELPDFFQGKHFFLYGEFPGDERRKLIRYVTAFNGE-LEDYMSDRVQFVITAQEWDPSFEE 59
Query: 649 A----SETTYVSSHWIRSCLEDGCLLDVGSHILY 678
A +V WI SC E LL H LY
Sbjct: 60 ALMDNPSLAFVRPRWIYSCNEKQKLL---PHQLY 90
>pdb|3PC6|A Chain A, X-Ray Crystal Structure Of The Second Xrcc1 Brct Domain.
pdb|3PC6|B Chain B, X-Ray Crystal Structure Of The Second Xrcc1 Brct Domain
Length = 104
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 110 FDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKP---IVTVNW 166
F DE+ ++ + VTA G L+ V FVI ++ AL ++ P V W
Sbjct: 19 FPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEAL--MENPSLAFVRPRW 76
Query: 167 LYQCWNEHRVVPQESYKVLP 186
+Y C + +++P + Y V+P
Sbjct: 77 IYSCNEKQKLLPHQLYGVVP 96
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 589 KLSTVFRGKIFRFSNSFPEDRRAEIVQWVNQGRGEVVNDDAKQNVHFTIECHGVIPKSAD 648
+L F GK F FP D R ++++V GE + D + V F I P +
Sbjct: 3 ELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGE-LEDYMNERVQFVITAQEWDPNFEE 61
Query: 649 A----SETTYVSSHWIRSCLEDGCLLDVGSHILY 678
A +V WI SC E LL H LY
Sbjct: 62 ALMENPSLAFVRPRWIYSCNEKQKLL---PHQLY 92
>pdb|1L7B|A Chain A, Solution Nmr Structure Of Brct Domain Of T. Thermophilus:
Northeast Structural Genomics Consortium Target Wr64tt
Length = 92
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 697 VSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLKYEAACKWGIPSITSEWI 756
+S+ E+ + LLR L GAK + +++K ++L+ G K E A G+P++T E +
Sbjct: 19 LSRPREEVKALLRRL----GAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEEL 74
Query: 757 Y 757
Y
Sbjct: 75 Y 75
>pdb|2VXB|A Chain A, Structure Of The Crb2-Brct2 Domain
pdb|2VXB|B Chain B, Structure Of The Crb2-Brct2 Domain
Length = 241
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 734 FAGGLKYEAACKWGIPSITSEWIYECVRQNEVVSLDHFSPKEVTTHDREAGLCTVSQ 790
F+ +KY A + IP + ++I +C++ N VV FSP + + CT+SQ
Sbjct: 77 FSRKVKYLEALAFNIPCVHPQFIKQCLKMNRVVD---FSPYLLASGYSHRLDCTLSQ 130
>pdb|2VXC|A Chain A, Structure Of The Crb2-Brct2 Domain Complex With
Phosphopeptide.
pdb|2VXC|B Chain B, Structure Of The Crb2-Brct2 Domain Complex With
Phosphopeptide
Length = 242
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 734 FAGGLKYEAACKWGIPSITSEWIYECVRQNEVVSLDHFSPKEVTTHDREAGLCTVSQ 790
F+ +KY A + IP + ++I +C++ N VV FSP + + CT+SQ
Sbjct: 78 FSRKVKYLEALAFNIPCVHPQFIKQCLKMNRVVD---FSPYLLASGYSHRLDCTLSQ 131
>pdb|2JW5|A Chain A, Polymerase Lambda Brct Domain
Length = 106
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 382 SQSEDNDLYLSDCR--IVLVGFEASEMRKLVNMVRRGGGSRYVSYNNGLTHIVV--GTLS 437
+ E+ + +LS R +V G + + + GG + G+THIVV G
Sbjct: 3 NSGEEAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDY 62
Query: 438 EADKREVRSLASLGIIQVVKSTWLEDCDRERREISI 473
E R +R Q+VKS WL C +ERR + +
Sbjct: 63 ERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDV 98
>pdb|3SQD|A Chain A, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex
pdb|3SQD|B Chain B, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex
Length = 219
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 198 PADERKEMEKLIVQNGGKYSPELTKKCTHLICD-ISFTIYFLNFPYTPEGDKFKVAKRWG 256
P ++ ++KL + G E +KCTHLI ++ T+ FL V K
Sbjct: 26 PVQVQQYIKKLYILGGE--VAESAQKCTHLIASKVTRTVKFLT--------AISVVK--- 72
Query: 257 HIHIINRKWFDQSMARRACLNEESYTVQDS 286
HI+ +W ++ + ++E++Y ++D+
Sbjct: 73 --HIVTPEWLEECFRCQKFIDEQNYILRDA 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,394,201
Number of Sequences: 62578
Number of extensions: 1212252
Number of successful extensions: 3375
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3318
Number of HSP's gapped (non-prelim): 47
length of query: 1017
length of database: 14,973,337
effective HSP length: 108
effective length of query: 909
effective length of database: 8,214,913
effective search space: 7467355917
effective search space used: 7467355917
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)