Query 001761
Match_columns 1017
No_of_seqs 488 out of 1960
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1929 Nucleotide excision re 100.0 3.1E-46 6.6E-51 447.9 35.0 771 98-1004 8-808 (811)
2 KOG1929 Nucleotide excision re 99.9 9.2E-21 2E-25 229.0 26.6 509 1-673 1-573 (811)
3 KOG3524 Predicted guanine nucl 99.7 3.1E-18 6.6E-23 197.3 8.6 174 96-286 115-296 (850)
4 PF12738 PTCB-BRCT: twin BRCT 99.5 4.2E-15 9E-20 127.5 5.3 63 693-755 1-63 (63)
5 PF12738 PTCB-BRCT: twin BRCT 99.4 2.8E-13 6.2E-18 116.2 5.0 63 103-166 1-63 (63)
6 PF00533 BRCT: BRCA1 C Terminu 99.3 9.3E-12 2E-16 110.4 8.7 77 183-270 2-78 (78)
7 PF00533 BRCT: BRCA1 C Terminu 99.3 1.7E-11 3.7E-16 108.7 9.0 73 688-760 4-78 (78)
8 KOG3226 DNA repair protein [Re 99.2 1.7E-11 3.7E-16 133.2 5.1 89 688-776 316-404 (508)
9 smart00292 BRCT breast cancer 99.0 4.9E-10 1.1E-14 98.5 7.6 78 185-273 1-80 (80)
10 cd00027 BRCT Breast Cancer Sup 99.0 5.4E-10 1.2E-14 96.0 7.7 70 692-761 1-72 (72)
11 smart00292 BRCT breast cancer 99.0 1E-09 2.2E-14 96.4 8.2 75 689-763 2-80 (80)
12 cd00027 BRCT Breast Cancer Sup 99.0 2.1E-09 4.5E-14 92.3 8.0 70 102-172 1-72 (72)
13 KOG3524 Predicted guanine nucl 98.9 7.2E-10 1.6E-14 129.2 5.3 182 181-479 113-294 (850)
14 KOG3226 DNA repair protein [Re 98.9 9E-10 2E-14 120.0 5.3 89 185-286 316-404 (508)
15 KOG0966 ATP-dependent DNA liga 98.6 3.2E-07 6.9E-12 109.5 12.8 241 4-282 631-881 (881)
16 KOG4362 Transcriptional regula 98.5 4.5E-07 9.7E-12 108.4 11.1 164 102-276 478-681 (684)
17 KOG0966 ATP-dependent DNA liga 98.5 9.1E-07 2E-11 105.7 12.0 184 588-772 628-881 (881)
18 PLN03122 Poly [ADP-ribose] pol 98.4 6.7E-07 1.4E-11 110.7 8.6 89 687-776 187-280 (815)
19 KOG3548 DNA damage checkpoint 98.3 1.7E-06 3.6E-11 104.3 10.4 165 97-277 923-1159(1176)
20 PLN03122 Poly [ADP-ribose] pol 98.3 1E-06 2.3E-11 109.0 8.1 92 185-285 188-279 (815)
21 PLN03123 poly [ADP-ribose] pol 98.3 1.6E-06 3.5E-11 109.6 8.2 88 687-774 391-481 (981)
22 PLN03123 poly [ADP-ribose] pol 98.2 2E-06 4.4E-11 108.7 6.4 91 185-285 392-482 (981)
23 KOG4362 Transcriptional regula 98.1 1.2E-05 2.6E-10 96.5 11.4 192 189-472 478-682 (684)
24 KOG3548 DNA damage checkpoint 98.0 2.3E-05 4.9E-10 94.9 10.1 100 185-286 924-1038(1176)
25 KOG2043 Signaling protein SWIF 97.6 0.00012 2.5E-09 92.1 8.2 115 104-222 661-799 (896)
26 PRK14350 ligA NAD-dependent DN 97.6 0.00014 3.1E-09 89.4 8.0 72 689-760 593-665 (669)
27 PRK06195 DNA polymerase III su 97.6 0.00025 5.4E-09 80.4 9.3 75 687-761 218-307 (309)
28 PRK06063 DNA polymerase III su 97.5 0.00024 5.3E-09 80.5 7.9 73 688-760 231-305 (313)
29 COG0272 Lig NAD-dependent DNA 97.4 0.00029 6.4E-09 84.8 8.1 72 688-759 593-665 (667)
30 PRK07956 ligA NAD-dependent DN 97.4 0.00031 6.7E-09 86.9 8.5 74 689-762 590-664 (665)
31 PRK14351 ligA NAD-dependent DN 97.3 0.00046 1E-08 85.4 8.6 74 689-762 609-684 (689)
32 PRK14350 ligA NAD-dependent DN 97.3 0.00057 1.2E-08 84.3 8.0 73 99-172 593-666 (669)
33 TIGR00575 dnlj DNA ligase, NAD 97.2 0.0005 1.1E-08 85.0 7.1 67 689-755 584-651 (652)
34 PRK06063 DNA polymerase III su 97.2 0.00091 2E-08 75.9 7.8 75 185-270 231-305 (313)
35 PRK06195 DNA polymerase III su 97.2 0.00096 2.1E-08 75.6 8.0 73 98-171 219-306 (309)
36 PRK14351 ligA NAD-dependent DN 97.1 0.0013 2.8E-08 81.6 8.8 75 98-173 608-684 (689)
37 PRK07956 ligA NAD-dependent DN 97.1 0.0012 2.7E-08 81.6 8.6 73 100-173 591-664 (665)
38 COG0272 Lig NAD-dependent DNA 97.0 0.0016 3.5E-08 78.7 7.9 72 98-170 593-665 (667)
39 KOG2481 Protein required for n 96.9 0.0012 2.5E-08 76.4 5.6 82 588-675 322-413 (570)
40 TIGR00575 dnlj DNA ligase, NAD 96.9 0.0017 3.6E-08 80.4 7.3 68 98-166 583-651 (652)
41 KOG2481 Protein required for n 96.5 0.0023 4.9E-08 74.1 4.2 91 388-489 325-425 (570)
42 COG5163 NOP7 Protein required 96.2 0.0044 9.5E-08 69.4 4.2 89 588-682 345-444 (591)
43 COG5275 BRCT domain type II [G 95.9 0.023 5.1E-07 59.1 7.3 74 688-761 155-230 (276)
44 KOG0323 TFIIF-interacting CTD 95.7 0.0048 1E-07 74.8 1.9 89 687-775 439-532 (635)
45 COG5163 NOP7 Protein required 95.6 0.011 2.4E-07 66.3 3.9 80 689-775 350-441 (591)
46 KOG0323 TFIIF-interacting CTD 95.4 0.0085 1.8E-07 72.7 2.8 93 184-288 439-535 (635)
47 KOG2043 Signaling protein SWIF 95.4 0.02 4.3E-07 72.6 6.0 81 693-776 660-741 (896)
48 COG5275 BRCT domain type II [G 95.2 0.056 1.2E-06 56.4 7.3 75 97-172 154-230 (276)
49 KOG2093 Translesion DNA polyme 93.1 0.057 1.2E-06 66.4 2.7 165 97-282 45-243 (1016)
50 PRK05601 DNA polymerase III su 86.4 2.2 4.7E-05 49.3 8.0 74 688-761 293-368 (377)
51 PRK05601 DNA polymerase III su 79.8 3.7 8E-05 47.5 6.4 77 185-272 293-369 (377)
52 KOG2093 Translesion DNA polyme 63.2 10 0.00022 47.7 5.3 88 686-776 44-133 (1016)
53 COG5067 DBF4 Protein kinase es 45.9 17 0.00036 41.9 3.0 51 95-145 118-168 (468)
54 COG5067 DBF4 Protein kinase es 40.1 20 0.00043 41.3 2.5 51 388-438 120-170 (468)
55 PF14605 Nup35_RRM_2: Nup53/35 25.5 1.7E+02 0.0038 24.1 5.2 36 104-139 3-38 (53)
56 PRK01438 murD UDP-N-acetylmura 24.8 8.9E+02 0.019 29.0 13.4 107 8-128 38-150 (480)
No 1
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-46 Score=447.86 Aligned_cols=771 Identities=19% Similarity=0.223 Sum_probs=476.4
Q ss_pred CCCCCcEEEEcCCChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccChhhHHHHHhcCCCcEeehhHHHHHHHhcCc-
Q 001761 98 LAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNWLYQCWNEHRV- 176 (1017)
Q Consensus 98 ~~~~G~~i~~tgl~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s~KY~~A~~~~~i~IV~p~Wv~~c~~~~~~- 176 (1017)
..|.|++||+||+++..+++|..++..|||.+..+++..+||||+++..+.||..|.+ .++++|..+|+...|.....
T Consensus 8 ~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~s~~~~~a~~-~~~~~~~~~wi~~~~d~~~~~ 86 (811)
T KOG1929|consen 8 KPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVTSSKYAAAHR-FDIKVLDSSWIDYIYDLWLLN 86 (811)
T ss_pred cccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCceeecccccccchhhhhc-CCCceecchHHHHHHHHhhhh
Confidence 5699999999999999999999999999999999999999999999999999977776 99999999999876655432
Q ss_pred ---cC----cccccccCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhH
Q 001761 177 ---VP----QESYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKF 249 (1017)
Q Consensus 177 ---lp----~~~y~~~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~ 249 (1017)
++ .+.++++.|.||.||++||...+|.++..+|..+||++...|...+.|++... ...++||
T Consensus 87 ~e~~~~~~l~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~-----------~~~~~kY 155 (811)
T KOG1929|consen 87 KEIRLLDPLRDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILP-----------EVKTEKY 155 (811)
T ss_pred ccCccCccchhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeecc-----------ccchHHH
Confidence 22 45688999999999999999999999999999999999999999988888832 2334999
Q ss_pred HHHHhcCCeeEEccchHHHHHHhccCCCCCccccCCCCccccccccCcccccccchhhccCCCCCCCccccccccccccC
Q 001761 250 KVAKRWGHIHIINRKWFDQSMARRACLNEESYTVQDSSVSSKKTVMGSLTKQHSQVKVIGNALSAPSSMATESNLLSVSC 329 (1017)
Q Consensus 250 ~~A~~~g~I~IVs~~WL~dSi~~g~~lde~~Y~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~s~~s~~~~ds~~~~i~~ 329 (1017)
+.|.+| +++||+.+|+++|+.++.++++..|++.... .+...+..+....+ .+ .+
T Consensus 156 e~al~w-n~~v~~~~w~~~s~~~~~~~~~~~~e~~~~~-~~is~~~~~~~~~~-----------~~------------~~ 210 (811)
T KOG1929|consen 156 EQALKW-NIPVVSDDWLFDSIEKTAVLETKPYEGAPVA-EAISGPIGSTLPKE-----------IL------------DG 210 (811)
T ss_pred HHHHhh-CCccccHHHHhhhhccccccccccccccccc-ceeccCCccccccc-----------cc------------cc
Confidence 999999 5999999999999999999999999997642 11111111110000 00 00
Q ss_pred CCcCCcchhhhcccCCCCcCCCCcccccCCCCCCCcccccCCCCCcccccCCCCCCCCcCcCCCcEEEEecCChHHHHHH
Q 001761 330 TGFADQDLEATFSQSMPSMYMDAPVVSKDGAIEAPTAQTRNESNSDVCVANDSQSEDNDLYLSDCRIVLVGFEASEMRKL 409 (1017)
Q Consensus 330 ~~~~~~D~~~t~s~~~~s~~s~~~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~gc~~yl~GF~~~e~~~L 409 (1017)
..+.-.|.|.+ +.+. + + ..+.. -++..+ ++++|.+|++||+..++..|
T Consensus 211 ~s~t~~~~~~~------------~~~~-------~-----n-~~~~p-----~~a~~~--~~~~c~v~~s~~~~~~~s~l 258 (811)
T KOG1929|consen 211 DSRTANDTWST------------SKVV-------T-----N-IKVLP-----FQAKIG--NLDDCLVETSGTTSRNRSAL 258 (811)
T ss_pred cchhhhccccc------------hhcc-------c-----c-cccch-----hhhhcc--ccccceeeecCCcccchhHh
Confidence 00000111000 0000 0 0 00000 011222 68999999999999999999
Q ss_pred HHHHHhCCCEEEeecCCCceEEEEcCCChhhHHHHHHhhhcCCcEEEcccHHHHHHhhccccccccchhh---ccccCCc
Q 001761 410 VNMVRRGGGSRYVSYNNGLTHIVVGTLSEADKREVRSLASLGIIQVVKSTWLEDCDRERREISILQRHVA---YDLLLPK 486 (1017)
Q Consensus 410 ~~lI~~~GG~v~~~ls~~vTHIIv~~~~~~~~~~vr~~~~~~~i~vV~~~WL~~Ci~~~~~l~e~~~~i~---~e~l~p~ 486 (1017)
.+.++.+||..+..-++.++|++++.......+.+...+.......+.+.=+.-.++..-.-+...+... .+..+|.
T Consensus 259 ~r~~~~g~~~~~~e~~e~~st~l~~~~~~~~~q~~d~~g~~~~~~n~~~~~~~~~s~~~~~~~~~~~k~~sF~~d~~~~~ 338 (811)
T KOG1929|consen 259 SRLSNNGGSLRFLERLEETSTSLLGDFDPNLEQLWDDNGLKQSFQNLGPSVLGPNSKRRSKNSVLIFKNCSFIIDFEKPG 338 (811)
T ss_pred HHhhhcccceeecccCccccchhhcccchHHHhhhhhccCcccccccCcccccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999876654433333211111011111000000000000000000000 0000000
Q ss_pred ccccccCCCCccccCCCCCCcccccccCCchhhhccCCCCCCCCCchhhhhHHHHHHhhccccccccccccccccccccc
Q 001761 487 ESAWSTKGAPLCTNNLNQGKESSVRHSLSSDEMLRSTNSGIGMPLSLEENREERAEIHMKRESSLEATAVPSQQNLLSAL 566 (1017)
Q Consensus 487 ~~~~~~k~~v~~~~~~~~~k~s~~~~~~p~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~a~~~qq~~~~~~ 566 (1017)
+ + ..+...+.+.+--+ .-++. .........+....-+....+
T Consensus 339 ~------------------~------~~~~~~ll~q~~~~--a~L~~------------~~~~~~~~~~~a~~~D~~~~i 380 (811)
T KOG1929|consen 339 D------------------H------ESPDKDLLRQYHGK--AYLFP------------SSARSYQKIRSAVPLDSLPDI 380 (811)
T ss_pred C------------------c------cccchhHHhhcCCc--eeecC------------cccccccccccccccCCCccc
Confidence 0 0 00000011110000 00000 000000000000000000000
Q ss_pred cccccccccccch--hhhhhhccccccCCCCCcEEEEcCCCChhhHHHHHHHHHcC-CCEEEecCCCCceEEEEeeCCCc
Q 001761 567 SDENKTQLRTKED--FRVQSLQNMKLSTVFRGKIFRFSNSFPEDRRAEIVQWVNQG-RGEVVNDDAKQNVHFTIECHGVI 643 (1017)
Q Consensus 567 ~~~~~~~~~~~~~--s~~~~~~~~~~~~iF~G~~F~i~~~f~~~~~~~l~~~I~~~-GG~Vv~~~~~~~td~iI~~~~~~ 643 (1017)
...++.+...... +............+|-...+-+ |+.+ .+...+..+ +-...-. .....++++..+...
T Consensus 381 s~i~e~~~~~~tp~~~~~~~~~~~~~~~~~v~s~~~~---~~~e---~i~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~ 453 (811)
T KOG1929|consen 381 SSINENQDSLGTPSFSESRELGAKLLKPVDVPSVKPF---FNTE---KIESSSFENELLHHLLL-PSTFLDVTLTEFAGV 453 (811)
T ss_pred ccccCCCCccccccccchhhhhhhhcccccccccccc---cchh---hhccccccccchhcccc-ccccccceeeccccc
Confidence 0000000000000 0000000011111222111100 1111 111111110 0000000 112234444322110
Q ss_pred cccccCCCCcEEeHHHHHHHHhhCcccCCCCCccCCCCCCCCCCCCCCCeEEEEeccChhhHHHHHHHHHHcCcEEeccc
Q 001761 644 PKSADASETTYVSSHWIRSCLEDGCLLDVGSHILYSPLHCQTPLPGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKL 723 (1017)
Q Consensus 644 ~~~~~~~~~~vVt~~Wl~~Cl~~~~ll~~~~~~l~~Pl~~~~pi~~f~g~~i~~Sg~~~~er~~l~~li~~lGg~~~~~l 723 (1017)
.....+.+|+..|...|+......+ ..+++|+|+..+..+|+++.|++++..+.++..+..++..+||.....|
T Consensus 454 ---e~~~~~k~v~~~~~v~~~~~~~~~~---~~~~~~vp~~~l~~~~e~~~~~~s~~~~~~~e~ln~~~~~~gas~~~~f 527 (811)
T KOG1929|consen 454 ---EVKHLLKNVTNPFSVNCILDLSSST---EDNLRPVPAAALSQPFENLTISNSQSAEAEREKLNNLANDLGASNVKTF 527 (811)
T ss_pred ---eeehhcccccchhHHHHHHHhhcCc---hhhcCcchhhcccccccCceEEeeechHHHHHHHhHhhhhcccccccee
Confidence 0112334899999999999887777 2367899999999999999999999999999999999999999999999
Q ss_pred cCcceEEEEccCChHHHHHHHcCCCceeChhHHHHHHHhCccCCCCCcCCCCCCccccccCcccccCCCCccccccCCCC
Q 001761 724 TKKVTHLLCKFAGGLKYEAACKWGIPSITSEWIYECVRQNEVVSLDHFSPKEVTTHDREAGLCTVSQFPMQSVQMSSADE 803 (1017)
Q Consensus 724 ~~~~THLI~~~~~g~Ky~~A~~w~I~IV~~~WL~dc~~~g~~l~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1017)
.++.|||||....|.||+.|.+|+||||+++||++|.++++..+.+.|+..+.+.+++..+. +-..+...+....-
T Consensus 528 ~r~~~~l~~~~~k~s~~~~~~kw~ip~vT~~wL~e~~rq~~~~~~e~~l~~~st~~e~~~~~----~~~~~~~P~~k~~t 603 (811)
T KOG1929|consen 528 TRKSTTLLTTSAKGSKYEIAGKWSIPIVTPDWLYECVRQNKGERNEGFLNGNSTAKERPISP----SIRFAVVPGKKPDT 603 (811)
T ss_pred eecccEEeccccccchhhhccccCCCccChhHHHhhccccCcccceeeccccccccccCccc----ccccccCCCCCcce
Confidence 99999999999999999999999999999999999999999999999999998888877652 11111111111111
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccc---cccchhhhccccccccccccccccCCCCCCccccCCC--CCCCCCCCCC
Q 001761 804 PSQFINPLGGLQSSSPQTMVHKIDDITR---SDNLRDEANQTSAHNKRARISEDEDHDTLPGVHLKDP--HRSTNYNGDS 878 (1017)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 878 (1017)
.+-...+..+.. .++.+++.++ +.. -.-+..-..+..+.+|.+.+....+.-....+-+... +-.++.++..
T Consensus 604 ~s~sv~~~~~~~--~~~s~~~v~~-~g~~~~~e~h~~~d~~~~~~sk~~~~~~~~d~~~~~~~le~~~~~~ps~~~~~v~ 680 (811)
T KOG1929|consen 604 VSKSVVHKEDTN--KPKSVATVSG-KGSGSVYEEHLLLDTEVKFDSKIAKTPPGGDLRDVSDYLELPLFDRPSHDLSRVV 680 (811)
T ss_pred eecceecccccC--CCcccccccc-cCCCccccccccccchhhhhhhhhcCCCcccccccccceecccccCcCCChhhcc
Confidence 222222111111 1222333222 211 0112333445566778888877766655555444443 2233434444
Q ss_pred CcccCCCCCCCCchHHHHHHHHHhhhccccC--CCCcccc-cccccccCCCCcccCcCCCCCcccccc---ccccccc--
Q 001761 879 MSKDNGEVPHIGSDVAAVIEDLVEQTSKVQD--LKSPERS-ECDKSLFPSDCSVLGQNHTDFNSVIGL---SRQWSNR-- 950 (1017)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-- 950 (1017)
.--++...+...+++++. .+.+|.+|+|+ ...|.|. .|+...|.- .|+..+.+.+-|. ++||++.
T Consensus 681 ~~~~~~a~~~~~r~~~~~--~~s~~~~k~q~t~~~~~~r~~~~e~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~ 753 (811)
T KOG1929|consen 681 LQQYDLASSQRKRTALDG--CVSEQVPKKQPTAISNPERIQRTEKVSHLN-----DRYAPGIDDKRGASLEEPHWRLTRN 753 (811)
T ss_pred ceeeeeccccccchhhhh--hhhhhcCCcCcccccCccccccccccchhh-----cccCCCcccccchhhhchhhhcccc
Confidence 445777788888888888 89999999998 7777763 233222222 4666666666666 9999999
Q ss_pred ---ccccCCCCCCCCCCCCCCcccCCCCcccccceeeeecccccchhHHHHhhhhhH
Q 001761 951 ---TLKKNDIQNPFNSKGVRSGIYEPFSETQTESQVVSYEEDLSGRQKIIDRAKSEA 1004 (1017)
Q Consensus 951 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1017)
.+|.+|++.| .+.+..-.|.+|++++++|||+||+++.+|+++.+++.|+..
T Consensus 754 ~~~~~~~~d~se~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~r~~~ 808 (811)
T KOG1929|consen 754 QTKDHKPDDISEP--DGKKGEERVETNRLQTPPSNVAKKSKKEDGAKANLTVKRDIW 808 (811)
T ss_pred ccccCCccccccC--cchhhhhhccCcccccCCccccCCCcccchHHHHhhhhcccc
Confidence 8899999999 777766669999999999999999999999999999999754
No 2
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=99.87 E-value=9.2e-21 Score=228.97 Aligned_cols=509 Identities=17% Similarity=0.135 Sum_probs=318.6
Q ss_pred CCCC-CCCCCceEEEeCCCCCHHHHHHHHHHHHHCCCEEEEccCCCCCCCCcEEEEcC-CChhhhHHHHhcCCCeeChHH
Q 001761 1 MMKP-KPFKEAKVYMSRNLVAPEIFDALLDALKLNGAEVELCCDPSRTGPNDFHVISS-SDHEKFEDLRAKGCNLLGPQC 78 (1017)
Q Consensus 1 ~~~~-~~f~~~~v~is~~~l~~~~~~~l~~~i~~~GG~v~~~~~~s~~~~~d~~Iia~-~~~~~f~~l~~~~~~Iv~P~w 78 (1017)
|..+ ..+....|.+++++++|+.+++|+.++..|||.++.+++++++ |+|++ +...+|..+...+++|+.++|
T Consensus 1 ~q~~~~~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~t-----hli~~~~~s~~~~~a~~~~~~~~~~~w 75 (811)
T KOG1929|consen 1 MQSTLYSKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVT-----HLIVGSVTSSKYAAAHRFDIKVLDSSW 75 (811)
T ss_pred CCCcccCcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCc-----eeecccccccchhhhhcCCCceecchH
Confidence 4444 4566777889999999999999999999999999999998776 67765 567789888888999999999
Q ss_pred HHHHHHhCCC----CCCCC-C--cccCCCCCcEEEEcCCChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcc-cChhhH
Q 001761 79 VLSCAKENRA----LPKQG-F--TCCLAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKN-VLAAKY 150 (1017)
Q Consensus 79 v~~c~~~~~~----lp~~~-~--p~~~~~~G~~i~~tgl~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~-~~s~KY 150 (1017)
|...+..... ++..+ + ..|.+|.|+.||+|||..++|.+|..+|-.|||++.+.|...+++++... ..+.||
T Consensus 76 i~~~~d~~~~~~e~~~~~~l~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kY 155 (811)
T KOG1929|consen 76 IDYIYDLWLLNKEIRLLDPLRDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKY 155 (811)
T ss_pred HHHHHHHhhhhccCccCccchhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHH
Confidence 9888876543 11111 1 13889999999999999999999999999999999999999988877765 455999
Q ss_pred HHHHhcCCCcEeehhHHHHHHHhcCccCccccc-----------------------------------------------
Q 001761 151 KWALNILKKPIVTVNWLYQCWNEHRVVPQESYK----------------------------------------------- 183 (1017)
Q Consensus 151 ~~A~~~~~i~IV~p~Wv~~c~~~~~~lp~~~y~----------------------------------------------- 183 (1017)
++|++ |+++||+.+|+++||.++..++...|+
T Consensus 156 e~al~-wn~~v~~~~w~~~s~~~~~~~~~~~~e~~~~~~~is~~~~~~~~~~~~~~~s~t~~~~~~~~~~~~n~~~~p~~ 234 (811)
T KOG1929|consen 156 EQALK-WNIPVVSDDWLFDSIEKTAVLETKPYEGAPVAEAISGPIGSTLPKEILDGDSRTANDTWSTSKVVTNIKVLPFQ 234 (811)
T ss_pred HHHHh-hCCccccHHHHhhhhcccccccccccccccccceeccCCccccccccccccchhhhccccchhcccccccchhh
Confidence 99998 999999999999999998765422111
Q ss_pred --ccCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEE
Q 001761 184 --VLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHII 261 (1017)
Q Consensus 184 --~~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IV 261 (1017)
.....+|.+..+|++...|..+.++++..||.-.......++|++.+. ..+ +. ++.|.
T Consensus 235 a~~~~~~~c~v~~s~~~~~~~s~l~r~~~~g~~~~~~e~~e~~st~l~~~----------~~~---~~--~q~~d----- 294 (811)
T KOG1929|consen 235 AKIGNLDDCLVETSGTTSRNRSALSRLSNNGGSLRFLERLEETSTSLLGD----------FDP---NL--EQLWD----- 294 (811)
T ss_pred hhccccccceeeecCCcccchhHhHHhhhcccceeecccCccccchhhcc----------cch---HH--Hhhhh-----
Confidence 122568999999999999999999999999999988889999999853 122 11 12231
Q ss_pred ccchHHHHHHhccCCCCCccccCCCCccccccccCcccccccchhhccCCCCCCCccccccccccccCCCcCCcchhhhc
Q 001761 262 NRKWFDQSMARRACLNEESYTVQDSSVSSKKTVMGSLTKQHSQVKVIGNALSAPSSMATESNLLSVSCTGFADQDLEATF 341 (1017)
Q Consensus 262 s~~WL~dSi~~g~~lde~~Y~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~s~~s~~~~ds~~~~i~~~~~~~~D~~~t~ 341 (1017)
..|-......|...... ++... ++.-. .--+++
T Consensus 295 ---------~~g~~~~~~n~~~~~~~---------------------------~~s~~-~~~~~---~~~~k~------- 327 (811)
T KOG1929|consen 295 ---------DNGLKQSFQNLGPSVLG---------------------------PNSKR-RSKNS---VLIFKN------- 327 (811)
T ss_pred ---------hccCcccccccCccccc---------------------------ccccc-ccccc---cccccc-------
Confidence 00000000111100000 00000 00000 000000
Q ss_pred ccCCCCcCCCCcccccCCCCCCCcccccCCCCCcccccCCCCCCCCcCcCCCcE-EEEecCChHHHHHHHHHHHhCCCEE
Q 001761 342 SQSMPSMYMDAPVVSKDGAIEAPTAQTRNESNSDVCVANDSQSEDNDLYLSDCR-IVLVGFEASEMRKLVNMVRRGGGSR 420 (1017)
Q Consensus 342 s~~~~s~~s~~~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~gc~-~yl~GF~~~e~~~L~~lI~~~GG~v 420 (1017)
..|. . +...+.+....+.++|-+.+. +|+.++....+..+.......++..
T Consensus 328 -----~sF~--~---------------------d~~~~~~~~~~~~~ll~q~~~~a~L~~~~~~~~~~~~~a~~~D~~~~ 379 (811)
T KOG1929|consen 328 -----CSFI--I---------------------DFEKPGDHESPDKDLLRQYHGKAYLFPSSARSYQKIRSAVPLDSLPD 379 (811)
T ss_pred -----cccc--c---------------------cccccCCccccchhHHhhcCCceeecCcccccccccccccccCCCcc
Confidence 0011 0 000011112223345556666 8888888888888888887777777
Q ss_pred EeecCCCceEEEEcCCChhhHHHHHHhhhcCCcEEEcccHHHHHHhhccccccccchhhccccCCcccccccCCCCcccc
Q 001761 421 YVSYNNGLTHIVVGTLSEADKREVRSLASLGIIQVVKSTWLEDCDRERREISILQRHVAYDLLLPKESAWSTKGAPLCTN 500 (1017)
Q Consensus 421 ~~~ls~~vTHIIv~~~~~~~~~~vr~~~~~~~i~vV~~~WL~~Ci~~~~~l~e~~~~i~~e~l~p~~~~~~~k~~v~~~~ 500 (1017)
+..+++.-+-+.+.... ..+.+.+.....++-+.|+.-|-+..-..+...-.+...+|.|...........+++.
T Consensus 380 is~i~e~~~~~~tp~~~-----~~~~~~~~~~~~~~v~s~~~~~~~e~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e 454 (811)
T KOG1929|consen 380 ISSINENQDSLGTPSFS-----ESRELGAKLLKPVDVPSVKPFFNTEKIESSSFENELLHHLLLPSTFLDVTLTEFAGVE 454 (811)
T ss_pred cccccCCCCcccccccc-----chhhhhhhhcccccccccccccchhhhccccccccchhccccccccccceeeccccce
Confidence 77776555522222211 1222233345677888887777776666665444444445555432221111111110
Q ss_pred CCCCCCcccccccCCchhhhccCCCCCCCCCchhhhhHHHHHHhhccccccccccccccccccc-cccccccccccccch
Q 001761 501 NLNQGKESSVRHSLSSDEMLRSTNSGIGMPLSLEENREERAEIHMKRESSLEATAVPSQQNLLS-ALSDENKTQLRTKED 579 (1017)
Q Consensus 501 ~~~~~k~s~~~~~~p~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~a~~~qq~~~~-~~~~~~~~~~~~~~~ 579 (1017)
. .+..+....+... ....-... . .+... .++
T Consensus 455 ---------------~-----~~~~k~v~~~~~v------~~~~~~~~---------~-~~~~~~~vp------------ 486 (811)
T KOG1929|consen 455 ---------------V-----KHLLKNVTNPFSV------NCILDLSS---------S-TEDNLRPVP------------ 486 (811)
T ss_pred ---------------e-----ehhcccccchhHH------HHHHHhhc---------C-chhhcCcch------------
Confidence 0 0000000000000 00000000 0 00000 011
Q ss_pred hhhhhhccccccCCCCCcEEEEcCCCChhhHHHHHHHHHcCCCEEEecCCCCceEEEEeeCC---CccccccCCCCcEEe
Q 001761 580 FRVQSLQNMKLSTVFRGKIFRFSNSFPEDRRAEIVQWVNQGRGEVVNDDAKQNVHFTIECHG---VIPKSADASETTYVS 656 (1017)
Q Consensus 580 s~~~~~~~~~~~~iF~G~~F~i~~~f~~~~~~~l~~~I~~~GG~Vv~~~~~~~td~iI~~~~---~~~~~~~~~~~~vVt 656 (1017)
......+|+|++|++ ..-+...+..+.......|...+..+..+.++++ +.. ........-.+++||
T Consensus 487 -------~~~l~~~~e~~~~~~-s~~~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~--~~~~k~s~~~~~~kw~ip~vT 556 (811)
T KOG1929|consen 487 -------AAALSQPFENLTISN-SQSAEAEREKLNNLANDLGASNVKTFTRKSTTLL--TTSAKGSKYEIAGKWSIPIVT 556 (811)
T ss_pred -------hhcccccccCceEEe-eechHHHHHHHhHhhhhccccccceeeecccEEe--ccccccchhhhccccCCCccC
Confidence 133567899999998 3445778889999999999999998876665554 332 112233445789999
Q ss_pred HHHHHHHHhhCcccCCC
Q 001761 657 SHWIRSCLEDGCLLDVG 673 (1017)
Q Consensus 657 ~~Wl~~Cl~~~~ll~~~ 673 (1017)
+.||..|...++..+.+
T Consensus 557 ~~wL~e~~rq~~~~~~e 573 (811)
T KOG1929|consen 557 PDWLYECVRQNKGERNE 573 (811)
T ss_pred hhHHHhhccccCcccce
Confidence 99999999988777655
No 3
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=99.73 E-value=3.1e-18 Score=197.32 Aligned_cols=174 Identities=21% Similarity=0.384 Sum_probs=151.8
Q ss_pred ccCCCCCcEEEEcCCChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccChhhHHHHHhcCCCcEeehhHHHHHHHhcC
Q 001761 96 CCLAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNWLYQCWNEHR 175 (1017)
Q Consensus 96 ~~~~~~G~~i~~tgl~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s~KY~~A~~~~~i~IV~p~Wv~~c~~~~~ 175 (1017)
||++|+|++.||||+-+.+. ++..+|+.|||.+..|++..+||+|++...++||..|+- +.|+|.|.||..||+.+.
T Consensus 115 y~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t--~~~~~rp~wv~~aw~~rn 191 (850)
T KOG3524|consen 115 YCELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALV--GVPTMRPDWVTEAWKHRN 191 (850)
T ss_pred cchhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEee--ccceechHhhhhhhcCcc
Confidence 47899999999999976544 899999999999999999999999999999999999986 499999999999999987
Q ss_pred ccC--------cccccccCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCch
Q 001761 176 VVP--------QESYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGD 247 (1017)
Q Consensus 176 ~lp--------~~~y~~~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~ 247 (1017)
.+. .+.|++++|+|+.|+|.||..++...|.+..+..||.+.. -...|||||+++....+
T Consensus 192 ~~yfda~~~~f~d~hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~----------- 259 (850)
T KOG3524|consen 192 DSYFDAMEPCFVDKHRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEV----------- 259 (850)
T ss_pred hhhhhhhccchhhhhccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCcccc-----------
Confidence 653 3679999999999999999999999999999999999999 55789999997643221
Q ss_pred hHHHHHhcCCeeEEccchHHHHHHhccCCCCCccccCCC
Q 001761 248 KFKVAKRWGHIHIINRKWFDQSMARRACLNEESYTVQDS 286 (1017)
Q Consensus 248 K~~~A~~~g~I~IVs~~WL~dSi~~g~~lde~~Y~~~~~ 286 (1017)
.-.+... +-.+|..+|+|-+|.+|.+..|..|.+..+
T Consensus 260 -~p~~~s~-~~~~vk~ewfw~siq~g~~a~e~~yl~~~~ 296 (850)
T KOG3524|consen 260 -EPLAVSS-NQVHVKKEWFWVSIQRGCCAIEDNYLLPTG 296 (850)
T ss_pred -ccccccc-cceeecccceEEEEecchhccccceecccc
Confidence 1112222 468999999999999999999999998765
No 4
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.55 E-value=4.2e-15 Score=127.55 Aligned_cols=63 Identities=43% Similarity=0.840 Sum_probs=56.3
Q ss_pred eEEEEeccChhhHHHHHHHHHHcCcEEeccccCcceEEEEccCChHHHHHHHcCCCceeChhH
Q 001761 693 FRFCVSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLKYEAACKWGIPSITSEW 755 (1017)
Q Consensus 693 ~~i~~Sg~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g~Ky~~A~~w~I~IV~~~W 755 (1017)
++||+|||.+.+|..|+++++.+||+|...|++++|||||..+.|+||+.|++||||||+++|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999
No 5
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.39 E-value=2.8e-13 Score=116.17 Aligned_cols=63 Identities=29% Similarity=0.487 Sum_probs=55.8
Q ss_pred cEEEEcCCChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccChhhHHHHHhcCCCcEeehhH
Q 001761 103 VKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNW 166 (1017)
Q Consensus 103 ~~i~~tgl~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s~KY~~A~~~~~i~IV~p~W 166 (1017)
++||+||++++++..|.+++++|||.|..+|+.++||||+....++||+.|.+ ++||||+|+|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~-~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKE-WGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHH-CTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHH-CCCcEECCCC
Confidence 58999999999999999999999999999999999999999999999999999 9999999999
No 6
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.29 E-value=9.3e-12 Score=110.44 Aligned_cols=77 Identities=34% Similarity=0.598 Sum_probs=69.5
Q ss_pred cccCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEc
Q 001761 183 KVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIIN 262 (1017)
Q Consensus 183 ~~~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs 262 (1017)
+.++|+||.||++++...+|+.++++|+.+||.+...+++.+||||++. ......|+..|..++ ++||+
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~----------~~~~~~k~~~~~~~~-i~iV~ 70 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGN----------PNKRTKKYKAAIANG-IPIVS 70 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESS----------SHCCCHHHHHHHHTT-SEEEE
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCC----------CCCccHHHHHHHHCC-CeEec
Confidence 5679999999999999999999999999999999999999999999954 113578899999886 99999
Q ss_pred cchHHHHH
Q 001761 263 RKWFDQSM 270 (1017)
Q Consensus 263 ~~WL~dSi 270 (1017)
++||+||+
T Consensus 71 ~~Wi~~ci 78 (78)
T PF00533_consen 71 PDWIEDCI 78 (78)
T ss_dssp THHHHHHH
T ss_pred HHHHHHhC
Confidence 99999996
No 7
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.26 E-value=1.7e-11 Score=108.74 Aligned_cols=73 Identities=32% Similarity=0.591 Sum_probs=69.8
Q ss_pred CCCCCeEEEEeccChhhHHHHHHHHHHcCcEEeccccCcceEEEEccC--ChHHHHHHHcCCCceeChhHHHHHH
Q 001761 688 PGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFA--GGLKYEAACKWGIPSITSEWIYECV 760 (1017)
Q Consensus 688 ~~f~g~~i~~Sg~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~--~g~Ky~~A~~w~I~IV~~~WL~dc~ 760 (1017)
+.|+|+.|+++++...+|..|+++++.+||++...+++++||||+... ...|+..|..++++||+++||++|+
T Consensus 4 ~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 4 KIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 469999999999999999999999999999999999999999999987 7899999999999999999999996
No 8
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.17 E-value=1.7e-11 Score=133.16 Aligned_cols=89 Identities=27% Similarity=0.487 Sum_probs=85.6
Q ss_pred CCCCCeEEEEeccChhhHHHHHHHHHHcCcEEeccccCcceEEEEccCChHHHHHHHcCCCceeChhHHHHHHHhCccCC
Q 001761 688 PGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLKYEAACKWGIPSITSEWIYECVRQNEVVS 767 (1017)
Q Consensus 688 ~~f~g~~i~~Sg~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g~Ky~~A~~w~I~IV~~~WL~dc~~~g~~l~ 767 (1017)
..++|+++.+|||...+|..|+..+-.|||+|..+.++.+|||||.+++.+||.+.+..|-.||+-+||++|+++.++||
T Consensus 316 klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~kk~lp 395 (508)
T KOG3226|consen 316 KLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQKKLLP 395 (508)
T ss_pred HhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHHHhhcc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCC
Q 001761 768 LDHFSPKEV 776 (1017)
Q Consensus 768 e~~y~~~~~ 776 (1017)
..+|++..+
T Consensus 396 ~rrYlm~~~ 404 (508)
T KOG3226|consen 396 IRRYLMHAG 404 (508)
T ss_pred HHHHHhcCC
Confidence 999998755
No 9
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.04 E-value=4.9e-10 Score=98.46 Aligned_cols=78 Identities=26% Similarity=0.424 Sum_probs=65.5
Q ss_pred cCCCCceEEEec-CChhhHHHHHHHHHHhCCeecCCCCC-CcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEc
Q 001761 185 LPFSGLMICVTR-IPADERKEMEKLIVQNGGKYSPELTK-KCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIIN 262 (1017)
Q Consensus 185 ~~F~Gl~I~~tG-~~~~~r~~l~~lI~~~GG~~~~~l~~-~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs 262 (1017)
++|+|+.||++| +....+..+.+++..+||.+...++. .+||+|++.. .....++..|...+ ++||+
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~----------~~~~~~~~~~~~~~-~~iV~ 69 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSP----------EGGKLELLLAIALG-IPIVT 69 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCC----------CCccHHHHHHHHcC-CCCcc
Confidence 479999999999 88899999999999999999999998 9999999542 11122356676664 99999
Q ss_pred cchHHHHHHhc
Q 001761 263 RKWFDQSMARR 273 (1017)
Q Consensus 263 ~~WL~dSi~~g 273 (1017)
++||.||++.+
T Consensus 70 ~~Wi~~~~~~~ 80 (80)
T smart00292 70 EDWLLDCLKAG 80 (80)
T ss_pred HHHHHHHHHCc
Confidence 99999999864
No 10
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.04 E-value=5.4e-10 Score=95.98 Aligned_cols=70 Identities=31% Similarity=0.557 Sum_probs=64.4
Q ss_pred CeEEEEeccC-hhhHHHHHHHHHHcCcEEeccccCcceEEEEccCChHH-HHHHHcCCCceeChhHHHHHHH
Q 001761 692 RFRFCVSQYE-EKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLK-YEAACKWGIPSITSEWIYECVR 761 (1017)
Q Consensus 692 g~~i~~Sg~~-~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g~K-y~~A~~w~I~IV~~~WL~dc~~ 761 (1017)
|+.|+++|+. +.++..|++++..+||++...++..+||||+......+ +..|..++++||+++||.+|++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 5789999998 88999999999999999999999999999999876655 8889999999999999999974
No 11
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.01 E-value=1e-09 Score=96.43 Aligned_cols=75 Identities=27% Similarity=0.522 Sum_probs=67.8
Q ss_pred CCCCeEEEEec-cChhhHHHHHHHHHHcCcEEeccccC-cceEEEEccCChHH--HHHHHcCCCceeChhHHHHHHHhC
Q 001761 689 GFERFRFCVSQ-YEEKDRVLLRNLCFVLGAKFMEKLTK-KVTHLLCKFAGGLK--YEAACKWGIPSITSEWIYECVRQN 763 (1017)
Q Consensus 689 ~f~g~~i~~Sg-~~~~er~~l~~li~~lGg~~~~~l~~-~~THLI~~~~~g~K--y~~A~~w~I~IV~~~WL~dc~~~g 763 (1017)
.|+|+.|+++| +...++..+++++..+||++...++. ++||+|+......+ +..|...+++||+++||.+|++.+
T Consensus 2 ~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~~ 80 (80)
T smart00292 2 LFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKAG 80 (80)
T ss_pred ccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHCc
Confidence 58999999999 88889999999999999999999998 89999998866544 577888999999999999999864
No 12
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.96 E-value=2.1e-09 Score=92.29 Aligned_cols=70 Identities=27% Similarity=0.501 Sum_probs=63.8
Q ss_pred CcEEEEcCCC-hhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccChhh-HHHHHhcCCCcEeehhHHHHHHH
Q 001761 102 GVKVIASGFD-VDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAK-YKWALNILKKPIVTVNWLYQCWN 172 (1017)
Q Consensus 102 G~~i~~tgl~-~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s~K-Y~~A~~~~~i~IV~p~Wv~~c~~ 172 (1017)
|+.||++|.. ...+..+.+++..+||.+..+++..+||||+.+....+ +..|.. .+++||+++||.+|++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~-~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIK-LGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHH-cCCeEecHHHHHHHhC
Confidence 6789999987 78999999999999999999999999999999877666 888887 8999999999999974
No 13
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=98.93 E-value=7.2e-10 Score=129.16 Aligned_cols=182 Identities=17% Similarity=0.220 Sum_probs=140.1
Q ss_pred cccccCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeE
Q 001761 181 SYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHI 260 (1017)
Q Consensus 181 ~y~~~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~I 260 (1017)
+..+-+|.+++.||||+....+ .+.+++..+||.+..+++.++||+|+ ....++||..|.-. .++
T Consensus 113 ply~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~------------n~s~gek~~~a~t~--~~~ 177 (850)
T KOG3524|consen 113 PLYCELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIA------------NKVEGEKQSIALVG--VPT 177 (850)
T ss_pred cccchhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEe------------ecccceEEEEEeec--cce
Confidence 3346689999999999987666 99999999999999999999999999 56678999988753 899
Q ss_pred EccchHHHHHHhccCCCCCccccCCCCccccccccCcccccccchhhccCCCCCCCccccccccccccCCCcCCcchhhh
Q 001761 261 INRKWFDQSMARRACLNEESYTVQDSSVSSKKTVMGSLTKQHSQVKVIGNALSAPSSMATESNLLSVSCTGFADQDLEAT 340 (1017)
Q Consensus 261 Vs~~WL~dSi~~g~~lde~~Y~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~s~~s~~~~ds~~~~i~~~~~~~~D~~~t 340 (1017)
+.++||..||+....+. |.+...
T Consensus 178 ~rp~wv~~aw~~rn~~y---fda~~~------------------------------------------------------ 200 (850)
T KOG3524|consen 178 MRPDWVTEAWKHRNDSY---FDAMEP------------------------------------------------------ 200 (850)
T ss_pred echHhhhhhhcCcchhh---hhhhcc------------------------------------------------------
Confidence 99999999987632211 111000
Q ss_pred cccCCCCcCCCCcccccCCCCCCCcccccCCCCCcccccCCCCCCCCcCcCCCcEEEEecCChHHHHHHHHHHHhCCCEE
Q 001761 341 FSQSMPSMYMDAPVVSKDGAIEAPTAQTRNESNSDVCVANDSQSEDNDLYLSDCRIVLVGFEASEMRKLVNMVRRGGGSR 420 (1017)
Q Consensus 341 ~s~~~~s~~s~~~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~gc~~yl~GF~~~e~~~L~~lI~~~GG~v 420 (1017)
.+.+.. . .+ -|.||.|++.||..+|...+.+.....||..
T Consensus 201 -------------~f~d~h----------------r----------l~-~feg~~~~f~gF~~ee~~~m~~sle~~gg~~ 240 (850)
T KOG3524|consen 201 -------------CFVDKH----------------R----------LG-VFEGLSLFFHGFKQEEIDDMLRSLENTGGKL 240 (850)
T ss_pred -------------chhhhh----------------c----------cc-cccCCeEeecCCcHHHHHHHHHHHHhcCCcc
Confidence 000000 0 01 2889999999999999999999999999999
Q ss_pred EeecCCCceEEEEcCCChhhHHHHHHhhhcCCcEEEcccHHHHHHhhccccccccchhh
Q 001761 421 YVSYNNGLTHIVVGTLSEADKREVRSLASLGIIQVVKSTWLEDCDRERREISILQRHVA 479 (1017)
Q Consensus 421 ~~~ls~~vTHIIv~~~~~~~~~~vr~~~~~~~i~vV~~~WL~~Ci~~~~~l~e~~~~i~ 479 (1017)
.. -...+||+|++....... -+....+..+|..+|+|-++..+++.-|..|...
T Consensus 241 a~-~d~~cthvvv~e~~~~~~----p~~~s~~~~~vk~ewfw~siq~g~~a~e~~yl~~ 294 (850)
T KOG3524|consen 241 AP-SDTLCTHVVVNEDNDEVE----PLAVSSNQVHVKKEWFWVSIQRGCCAIEDNYLLP 294 (850)
T ss_pred cC-CCCCceeEeecCCccccc----cccccccceeecccceEEEEecchhccccceecc
Confidence 98 557899999998764321 1222346789999999999999999998776543
No 14
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=98.92 E-value=9e-10 Score=119.99 Aligned_cols=89 Identities=22% Similarity=0.477 Sum_probs=83.1
Q ss_pred cCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEccc
Q 001761 185 LPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRK 264 (1017)
Q Consensus 185 ~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs~~ 264 (1017)
++++|+++.++||...+|..|+.-...+|++|..+.+..|||||| ..+.+.||......| -.||+.+
T Consensus 316 klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLIC------------AF~NTPKy~QV~g~G-g~IV~ke 382 (508)
T KOG3226|consen 316 KLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLIC------------AFPNTPKYRQVEGNG-GTIVSKE 382 (508)
T ss_pred HhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEE------------ecCCCcchhhcccCC-ceEeeHH
Confidence 578999999999999999999999999999999999999999999 567788999988776 6899999
Q ss_pred hHHHHHHhccCCCCCccccCCC
Q 001761 265 WFDQSMARRACLNEESYTVQDS 286 (1017)
Q Consensus 265 WL~dSi~~g~~lde~~Y~~~~~ 286 (1017)
||.+|++..++||.+.|.+..+
T Consensus 383 WI~~Cy~~kk~lp~rrYlm~~~ 404 (508)
T KOG3226|consen 383 WITECYAQKKLLPIRRYLMHAG 404 (508)
T ss_pred HHHHHHHHHhhccHHHHHhcCC
Confidence 9999999999999999998755
No 15
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=98.58 E-value=3.2e-07 Score=109.51 Aligned_cols=241 Identities=18% Similarity=0.171 Sum_probs=137.0
Q ss_pred CCCCCCceEEEeCCCCCHHHHHHHHHHHHHCCCEEEEccCCCCCCCCcEEEEcCCC-hhhhHHHHhcCCCeeChHHHHHH
Q 001761 4 PKPFKEAKVYMSRNLVAPEIFDALLDALKLNGAEVELCCDPSRTGPNDFHVISSSD-HEKFEDLRAKGCNLLGPQCVLSC 82 (1017)
Q Consensus 4 ~~~f~~~~v~is~~~l~~~~~~~l~~~i~~~GG~v~~~~~~s~~~~~d~~Iia~~~-~~~f~~l~~~~~~Iv~P~wv~~c 82 (1017)
+.+|+|..|+|....-....+..++++|.+|||.++....|+ .+.++.+.+... .+++. +.+.+|.||.|+||++|
T Consensus 631 s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~--~~~ci~~a~~et~~vk~~-~~~~~cdVl~p~Wlldc 707 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPS--DTLCIATAGKETTRVKAQ-AIKRSCDVLKPAWLLDC 707 (881)
T ss_pred hhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCC--CcceEEeccccchHHHHH-HHhccCceeeHHHHHHH
Confidence 458999999998777666778899999999999999865543 222322233343 34554 44559999999999999
Q ss_pred HHhCCCCCCCCCcccCCCCCcEEEEcCCChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccChhh-HHHHHh-cCCCc
Q 001761 83 AKENRALPKQGFTCCLAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAK-YKWALN-ILKKP 160 (1017)
Q Consensus 83 ~~~~~~lp~~~~p~~~~~~G~~i~~tgl~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s~K-Y~~A~~-~~~i~ 160 (1017)
..+++.+|-.++-+ |. ..+.-++.++.-+..+|.+|..|+.-+ -| .+ ...+.. .-..|
T Consensus 708 c~~~~l~p~~P~~~--------fh---~~e~~~~~~a~~~D~~gdSy~~di~l~--~l-------~~~ls~~k~S~ds~~ 767 (881)
T KOG0966|consen 708 CKKQRLLPWLPRDL--------FH---ATEKGREKLAKEVDCLGDSYENDIDLE--QL-------KKVLSGIKKSQDSLP 767 (881)
T ss_pred HhhhhccccccHHH--------Hh---hCchHHHHHHHHHhhhcchhhhhccHH--HH-------HHHHhhhhhcccccC
Confidence 99999877665431 11 123456777888888899888876400 00 00 000100 01122
Q ss_pred EeehhHHHHHHHhcCccCcccccccCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCC------CCcceEEeccccc
Q 001761 161 IVTVNWLYQCWNEHRVVPQESYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELT------KKCTHLICDISFT 234 (1017)
Q Consensus 161 IV~p~Wv~~c~~~~~~lp~~~y~~~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~------~~~THLIv~~~~~ 234 (1017)
.+...=+ +|.+.+. +..-..+..|..+...+ ..+-..+.-.+..+||.+...-. ...||+|+..
T Consensus 768 ~~~~~~~-~~~e~r~--~~~~~~~~~f~~~~~~~----~se~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~--- 837 (881)
T KOG0966|consen 768 PMGASEK-DSLERRF--SLFLSSLRMFYVLRRKL----SSEEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRC--- 837 (881)
T ss_pred chhhhhh-hcHHHhh--ccccccceeeecccccc----cHHHHHHHHHHHHhcceeeeccchhhhcccceeeeeeee---
Confidence 2211110 1111110 00001112233333222 22333344455666999886532 4679999831
Q ss_pred cccccCCCCCCchhH-HHHHhcCCeeEEccchHHHHHHhccCCCCCccc
Q 001761 235 IYFLNFPYTPEGDKF-KVAKRWGHIHIINRKWFDQSMARRACLNEESYT 282 (1017)
Q Consensus 235 ~~~~~~~~~~~g~K~-~~A~~~g~I~IVs~~WL~dSi~~g~~lde~~Y~ 282 (1017)
++ ..-...+. +++..--+-+||.+.|+.+|+..+..++|+.|.
T Consensus 838 i~-----~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 838 ID-----EDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred cc-----hHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCccccCC
Confidence 00 00111122 222211112899999999999999999999884
No 16
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=98.50 E-value=4.5e-07 Score=108.42 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=123.0
Q ss_pred CcEEEEcCCChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcc------cChhhHHHHHhcCCCcEeehhHHHHHHHhcC
Q 001761 102 GVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKN------VLAAKYKWALNILKKPIVTVNWLYQCWNEHR 175 (1017)
Q Consensus 102 G~~i~~tgl~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~------~~s~KY~~A~~~~~i~IV~p~Wv~~c~~~~~ 175 (1017)
-.+.+++|+.+.+++.|...+.. ++.+..+..+||+|+.. .++.||..++. .|+||++..|+.+|++.++
T Consensus 478 k~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil-~gkwi~~~~w~~~s~k~~~ 553 (684)
T KOG4362|consen 478 KLVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGIL-RGKWILSYDWVLASLKLRK 553 (684)
T ss_pred ceeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhh-cCceeeeHHHHHHHHHhcC
Confidence 36788899999999999888877 77777888999999984 35889999997 8999999999999999999
Q ss_pred ccCcc-----------------------cccccCCCCceEEEec-CChhhHHHHHHHHHHhCCeecCC------CCCCcc
Q 001761 176 VVPQE-----------------------SYKVLPFSGLMICVTR-IPADERKEMEKLIVQNGGKYSPE------LTKKCT 225 (1017)
Q Consensus 176 ~lp~~-----------------------~y~~~~F~Gl~I~~tG-~~~~~r~~l~~lI~~~GG~~~~~------l~~~~T 225 (1017)
+++.+ .|++.+|+|+.|||.| |...-.++|.+++...||..... +++..|
T Consensus 554 ~~~eepfEl~~d~~~~~~~~~~~~~~a~s~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~ 633 (684)
T KOG4362|consen 554 WVSEEPFELQIDVPGAREGPKEKRLRAESYKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQVPRVAYSDKKKST 633 (684)
T ss_pred CCCCCCeeEeecccCcccCcccccccccccCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeeccCcccccccccc
Confidence 98754 3567899999999988 67788999999999999987643 333333
Q ss_pred eEEeccccccccccCCCCCCchh---HHH-HHhcCCeeEEccchHHHHHHhccCC
Q 001761 226 HLICDISFTIYFLNFPYTPEGDK---FKV-AKRWGHIHIINRKWFDQSMARRACL 276 (1017)
Q Consensus 226 HLIv~~~~~~~~~~~~~~~~g~K---~~~-A~~~g~I~IVs~~WL~dSi~~g~~l 276 (1017)
-.+....-+. ..+.-.| +++ |... +.+.|+..|+.|+++-..++
T Consensus 634 ~~~~~~~~~~------~~~~~~k~~~~ea~~~s~-~a~~~~~~wvl~s~a~~~~~ 681 (684)
T KOG4362|consen 634 IVVLSEKPVL------DSILWQKVNDAEALALSQ-RARAVSSSWVLDSIAGYQIL 681 (684)
T ss_pred eeEeecccCC------CchhhhhhccHHHHHHhc-CCCccchhhhhcchhceeee
Confidence 3333221111 1111122 222 2333 47999999999999876554
No 17
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=98.46 E-value=9.1e-07 Score=105.74 Aligned_cols=184 Identities=14% Similarity=0.243 Sum_probs=120.5
Q ss_pred ccccCCCCCcEEEEcCCCChhh-HHHHHHHHHcCCCEEEecCCCCceEEEEe-eCCCccc--cccCCCCcEEeHHHHHHH
Q 001761 588 MKLSTVFRGKIFRFSNSFPEDR-RAEIVQWVNQGRGEVVNDDAKQNVHFTIE-CHGVIPK--SADASETTYVSSHWIRSC 663 (1017)
Q Consensus 588 ~~~~~iF~G~~F~i~~~f~~~~-~~~l~~~I~~~GG~Vv~~~~~~~td~iI~-~~~~~~~--~~~~~~~~vVt~~Wl~~C 663 (1017)
.+.+++|.|..||+..+.+... +..+.++|.++||.|+....+..++.+++ ....+.. .+-.....|+.+.||.+|
T Consensus 628 ~~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldc 707 (881)
T KOG0966|consen 628 AKISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDC 707 (881)
T ss_pred cchhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHH
Confidence 5578999999999988877555 79999999999999999988765555432 2222211 222346789999999999
Q ss_pred HhhCcccCCCCCccCCCCC----------------------------------------------------CCCCCCCCC
Q 001761 664 LEDGCLLDVGSHILYSPLH----------------------------------------------------CQTPLPGFE 691 (1017)
Q Consensus 664 l~~~~ll~~~~~~l~~Pl~----------------------------------------------------~~~pi~~f~ 691 (1017)
....+++|...+.+|.--+ .+.+. ++.
T Consensus 708 c~~~~l~p~~P~~~fh~~e~~~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~S~ds~~~~~~~~~~~~e~r~~~-~~~ 786 (881)
T KOG0966|consen 708 CKKQRLLPWLPRDLFHATEKGREKLAKEVDCLGDSYENDIDLEQLKKVLSGIKKSQDSLPPMGASEKDSLERRFSL-FLS 786 (881)
T ss_pred HhhhhccccccHHHHhhCchHHHHHHHHHhhhcchhhhhccHHHHHHHHhhhhhcccccCchhhhhhhcHHHhhcc-ccc
Confidence 9999988764322221110 01111 222
Q ss_pred CeEEEE--eccChhhHHHHHHHHHHcCcEEecc------ccCcceEEEEccC--C--hHHHHHHHcCC--CceeChhHHH
Q 001761 692 RFRFCV--SQYEEKDRVLLRNLCFVLGAKFMEK------LTKKVTHLLCKFA--G--GLKYEAACKWG--IPSITSEWIY 757 (1017)
Q Consensus 692 g~~i~~--Sg~~~~er~~l~~li~~lGg~~~~~------l~~~~THLI~~~~--~--g~Ky~~A~~w~--I~IV~~~WL~ 757 (1017)
.+++.. +++...+-..+.-.+..+|++++.. ...+.||+|...- . ..+-..|.+.- -+||++.|+.
T Consensus 787 ~~~~f~~~~~~~~se~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~ 866 (881)
T KOG0966|consen 787 SLRMFYVLRRKLSSEEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVD 866 (881)
T ss_pred cceeeecccccccHHHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHH
Confidence 333322 2333445556667778889998753 3346799886621 1 12222333322 2899999999
Q ss_pred HHHHhCccCCCCCcC
Q 001761 758 ECVRQNEVVSLDHFS 772 (1017)
Q Consensus 758 dc~~~g~~l~e~~y~ 772 (1017)
+|+..+-++||+.|.
T Consensus 867 ~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 867 HSINENCLLPEEDFP 881 (881)
T ss_pred HhhcccccCccccCC
Confidence 999999999999984
No 18
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.37 E-value=6.7e-07 Score=110.73 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=78.8
Q ss_pred CCCCCCeEEEEeccChhhHHHHHHHHHHcCcEEeccccCcceEEEEccCC----h-HHHHHHHcCCCceeChhHHHHHHH
Q 001761 687 LPGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAG----G-LKYEAACKWGIPSITSEWIYECVR 761 (1017)
Q Consensus 687 i~~f~g~~i~~Sg~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~----g-~Ky~~A~~w~I~IV~~~WL~dc~~ 761 (1017)
-.+|.|++|+++|-....|..++.+|+.+||++...+ .++||||+...+ | .|+++|++.|||||+.+||.+|+.
T Consensus 187 ~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~i~ 265 (815)
T PLN03122 187 GKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDSIE 265 (815)
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHHHh
Confidence 3469999999999776689999999999999999999 567788877633 4 899999999999999999999999
Q ss_pred hCccCCCCCcCCCCC
Q 001761 762 QNEVVSLDHFSPKEV 776 (1017)
Q Consensus 762 ~g~~l~e~~y~~~~~ 776 (1017)
.++.+++..|.+...
T Consensus 266 ~~k~~~~~~y~l~~~ 280 (815)
T PLN03122 266 KQEAQPLEAYDVVSD 280 (815)
T ss_pred cCCcccchhhhhccc
Confidence 999999999988643
No 19
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=98.33 E-value=1.7e-06 Score=104.28 Aligned_cols=165 Identities=20% Similarity=0.211 Sum_probs=102.8
Q ss_pred cCCCCCcEEEEcCCChhhHHHHHHHHHHcCCEEeec-------------------CCC-------ceeEEEEcc-cChhh
Q 001761 97 CLAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTK-------------------ATL-------DVSFVIVKN-VLAAK 149 (1017)
Q Consensus 97 ~~~~~G~~i~~tgl~~~ek~~l~~lI~~mGG~~~~~-------------------lt~-------~vTHLI~~~-~~s~K 149 (1017)
-++|.|++|.+|+.... ++.....+..+||.+... |.. .--+||+.. .++-|
T Consensus 923 kniFd~cvF~lTsa~~s-d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~K 1001 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANRS-DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTHK 1001 (1176)
T ss_pred cchhcceeEEEeccccc-hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHHH
Confidence 37899999999996532 233444445566655432 211 124677774 46899
Q ss_pred HHHHHhcCCCcEeehhHHHHHHHhcCccCcccccc-------------------cCCCCc--------------eEEEec
Q 001761 150 YKWALNILKKPIVTVNWLYQCWNEHRVVPQESYKV-------------------LPFSGL--------------MICVTR 196 (1017)
Q Consensus 150 Y~~A~~~~~i~IV~p~Wv~~c~~~~~~lp~~~y~~-------------------~~F~Gl--------------~I~~tG 196 (1017)
|..|+. .|||||++.||.+|.++++++++.+|-+ .+|++| .|.++|
T Consensus 1002 YLeaLA-~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS~rlds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~g 1080 (1176)
T KOG3548|consen 1002 YLEALA-RGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYSIRLDSQLMPAIEPFNPSENLKDTTLYVKSTLSAREVTQTG 1080 (1176)
T ss_pred HHHHHH-cCCCcccHHHHHHHHhccccccchhhcccCccccccccccccCccccCchhhccceeeEeeccccceeEEEec
Confidence 999998 9999999999999999999998766632 122233 333333
Q ss_pred CChhhHHHHHHHHHHhCCeecCCC------C------CCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEccc
Q 001761 197 IPADERKEMEKLIVQNGGKYSPEL------T------KKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRK 264 (1017)
Q Consensus 197 ~~~~~r~~l~~lI~~~GG~~~~~l------~------~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs~~ 264 (1017)
-. ..--+++.-|...||.-+-++ + .-.-||+++ .....-.+.|-+.+ +++|+.+
T Consensus 1081 p~-~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~------------~~~~svmk~ad~l~-~pvvs~E 1146 (1176)
T KOG3548|consen 1081 PG-GTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDG------------TFRDSVMKYADTLG-APVVSSE 1146 (1176)
T ss_pred CC-cchHHHHHHHHHhhchheecccccccccccccccceeEEEecC------------ccHHHHHHHHHHhC-CCccChh
Confidence 22 334566677777777644332 1 112222221 11122334444444 8999999
Q ss_pred hHHHHHHhccCCC
Q 001761 265 WFDQSMARRACLN 277 (1017)
Q Consensus 265 WL~dSi~~g~~ld 277 (1017)
||.+||-.|....
T Consensus 1147 WvIQtiI~~~~i~ 1159 (1176)
T KOG3548|consen 1147 WVIQTIILGKAIE 1159 (1176)
T ss_pred HhheeeeccccCC
Confidence 9999998876543
No 20
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.30 E-value=1e-06 Score=109.02 Aligned_cols=92 Identities=24% Similarity=0.367 Sum_probs=78.7
Q ss_pred cCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEccc
Q 001761 185 LPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRK 264 (1017)
Q Consensus 185 ~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs~~ 264 (1017)
++|.|++|+++|.....|.+++.+|+.+||+++..+ ..+||+|+..... ..+.+.|++.|++.| |+||+.+
T Consensus 188 kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev-------~k~gsSKlkkAk~lg-IpIVsEd 258 (815)
T PLN03122 188 KPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAER-------ERGGSSKIAEAMERG-IPVVREA 258 (815)
T ss_pred CCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccc-------cccCccHHHHHHHcC-CcCccHH
Confidence 579999999999876689999999999999999999 6788999854211 112247999999996 9999999
Q ss_pred hHHHHHHhccCCCCCccccCC
Q 001761 265 WFDQSMARRACLNEESYTVQD 285 (1017)
Q Consensus 265 WL~dSi~~g~~lde~~Y~~~~ 285 (1017)
||.+|+..+..+++..|.+..
T Consensus 259 ~L~d~i~~~k~~~~~~y~l~~ 279 (815)
T PLN03122 259 WLIDSIEKQEAQPLEAYDVVS 279 (815)
T ss_pred HHHHHHhcCCcccchhhhhcc
Confidence 999999999999999999853
No 21
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.25 E-value=1.6e-06 Score=109.58 Aligned_cols=88 Identities=10% Similarity=0.206 Sum_probs=79.8
Q ss_pred CCCCCCeEEEEeccChhhHHHHHHHHHHcCcEEeccccCcceEEEEcc---CChHHHHHHHcCCCceeChhHHHHHHHhC
Q 001761 687 LPGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKF---AGGLKYEAACKWGIPSITSEWIYECVRQN 763 (1017)
Q Consensus 687 i~~f~g~~i~~Sg~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~---~~g~Ky~~A~~w~I~IV~~~WL~dc~~~g 763 (1017)
.++|.|++|+++|-.+.....++++|+.+||+|...++..+||||+.. ..+.|+++|++.+||||+.+||.+|...+
T Consensus 391 ~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~~~ 470 (981)
T PLN03123 391 SEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFKKK 470 (981)
T ss_pred CCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHhcc
Confidence 467999999999977776789999999999999999999999999875 34788999999999999999999999999
Q ss_pred ccCCCCCcCCC
Q 001761 764 EVVSLDHFSPK 774 (1017)
Q Consensus 764 ~~l~e~~y~~~ 774 (1017)
.++|+..|...
T Consensus 471 ~~~p~~~y~~~ 481 (981)
T PLN03123 471 KKLPFDKYKLE 481 (981)
T ss_pred ccCcchhhhhc
Confidence 99999999665
No 22
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.16 E-value=2e-06 Score=108.69 Aligned_cols=91 Identities=15% Similarity=0.267 Sum_probs=80.3
Q ss_pred cCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEccc
Q 001761 185 LPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRK 264 (1017)
Q Consensus 185 ~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs~~ 264 (1017)
++|.|+.|++.|-.+..+.+++.+|+.+||+++..++..+||||+.. + ....+.|++.|++.+ |+||+.+
T Consensus 392 ~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~-e--------~~k~~~kv~qAk~~~-ipIVsed 461 (981)
T PLN03123 392 EFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCG-E--------LDDEDAEMRKARRMK-IPIVRED 461 (981)
T ss_pred CCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccH-H--------hhhcchHHHHHHhcC-CCcccHH
Confidence 78999999999987777899999999999999999999999999854 1 234468899999886 9999999
Q ss_pred hHHHHHHhccCCCCCccccCC
Q 001761 265 WFDQSMARRACLNEESYTVQD 285 (1017)
Q Consensus 265 WL~dSi~~g~~lde~~Y~~~~ 285 (1017)
||.||+..+.++++..|.+..
T Consensus 462 wL~ds~~~~~~~p~~~y~~~~ 482 (981)
T PLN03123 462 YLVDCFKKKKKLPFDKYKLEA 482 (981)
T ss_pred HHHHHHhccccCcchhhhhcc
Confidence 999999999999999997653
No 23
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=98.12 E-value=1.2e-05 Score=96.45 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=131.5
Q ss_pred CceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEccchHHH
Q 001761 189 GLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRKWFDQ 268 (1017)
Q Consensus 189 Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs~~WL~d 268 (1017)
-++.+.+|+...++..|...... +.+.....-+||+|++..... .-..+.|+..++..| .||+++.|+..
T Consensus 478 k~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g------~c~rTlk~~~gil~g-kwi~~~~w~~~ 547 (684)
T KOG4362|consen 478 KLVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEG------ACLRTLKVLMGILRG-KWILSYDWVLA 547 (684)
T ss_pred ceeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeeccccc------chhhhHHHHHHhhcC-ceeeeHHHHHH
Confidence 57788999999999999988877 777777889999999653222 223568899898886 89999999999
Q ss_pred HHHhccCCCCCccccCCCCccccccccCcccccccchhhccCCCCCCCccccccccccccCCCcCCcchhhhcccCCCCc
Q 001761 269 SMARRACLNEESYTVQDSSVSSKKTVMGSLTKQHSQVKVIGNALSAPSSMATESNLLSVSCTGFADQDLEATFSQSMPSM 348 (1017)
Q Consensus 269 Si~~g~~lde~~Y~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~s~~s~~~~ds~~~~i~~~~~~~~D~~~t~s~~~~s~ 348 (1017)
|+..+.+++|+.|++......... .. +.
T Consensus 548 s~k~~~~~~eepfEl~~d~~~~~~----------------------------~~---------~~--------------- 575 (684)
T KOG4362|consen 548 SLKLRKWVSEEPFELQIDVPGARE----------------------------GP---------KE--------------- 575 (684)
T ss_pred HHHhcCCCCCCCeeEeecccCccc----------------------------Cc---------cc---------------
Confidence 999999999999999643211100 00 00
Q ss_pred CCCCcccccCCCCCCCcccccCCCCCcccccCCCCCCCCcCcCCCcEEEEec-CChHHHHHHHHHHHhCCCEEEeecC--
Q 001761 349 YMDAPVVSKDGAIEAPTAQTRNESNSDVCVANDSQSEDNDLYLSDCRIVLVG-FEASEMRKLVNMVRRGGGSRYVSYN-- 425 (1017)
Q Consensus 349 ~s~~~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~gc~~yl~G-F~~~e~~~L~~lI~~~GG~v~~~ls-- 425 (1017)
.+ +.... ..+-+|.|.-||+.| |...-...|.++|...||++....+
T Consensus 576 ------------~~-~~a~s-----------------~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~~~~~ 625 (684)
T KOG4362|consen 576 ------------KR-LRAES-----------------YKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQVPRVA 625 (684)
T ss_pred ------------cc-ccccc-----------------cCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeeccCcc
Confidence 00 00000 112359999999998 8888999999999999999887432
Q ss_pred ----CCceEEEEcCCC--hh----hHHHHHHhhhcCCcEEEcccHHHHHHhhccccc
Q 001761 426 ----NGLTHIVVGTLS--EA----DKREVRSLASLGIIQVVKSTWLEDCDRERREIS 472 (1017)
Q Consensus 426 ----~~vTHIIv~~~~--~~----~~~~vr~~~~~~~i~vV~~~WL~~Ci~~~~~l~ 472 (1017)
...|-+++.... +. .......++.......|+..|+.+++...+.++
T Consensus 626 ~~~~k~s~~~~~~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a~~~~~~ 682 (684)
T KOG4362|consen 626 YSDKKKSTIVVLSEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIAGYQILV 682 (684)
T ss_pred cccccccceeEeecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchhceeeee
Confidence 223333332211 11 111233344455678899999999987665543
No 24
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.98 E-value=2.3e-05 Score=94.86 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=65.3
Q ss_pred cCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCC-CCCcceEEeccc--------------cccccccCCCCCCchhH
Q 001761 185 LPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPEL-TKKCTHLICDIS--------------FTIYFLNFPYTPEGDKF 249 (1017)
Q Consensus 185 ~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l-~~~~THLIv~~~--------------~~~~~~~~~~~~~g~K~ 249 (1017)
-+|.||+|.||+.. ..+.+...-++.+||.+.... ..--+|-..+.. +.-..|++-....+-||
T Consensus 924 niFd~cvF~lTsa~-~sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~KY 1002 (1176)
T KOG3548|consen 924 NIFDGCVFMLTSAN-RSDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTHKY 1002 (1176)
T ss_pred chhcceeEEEeccc-cchhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHHHH
Confidence 57999999999975 344556666666777755331 100111111000 00000111123456899
Q ss_pred HHHHhcCCeeEEccchHHHHHHhccCCCCCccccCCC
Q 001761 250 KVAKRWGHIHIINRKWFDQSMARRACLNEESYTVQDS 286 (1017)
Q Consensus 250 ~~A~~~g~I~IVs~~WL~dSi~~g~~lde~~Y~~~~~ 286 (1017)
..|++.| |++|++.||.+|+.+++++|..+|+++.+
T Consensus 1003 LeaLA~g-iPcVh~~fI~aC~e~nr~Vdy~~YLLpsG 1038 (1176)
T KOG3548|consen 1003 LEALARG-IPCVHNTFIQACGEQNRCVDYTDYLLPSG 1038 (1176)
T ss_pred HHHHHcC-CCcccHHHHHHHHhccccccchhhcccCc
Confidence 9999997 99999999999999999999999999765
No 25
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.61 E-value=0.00012 Score=92.10 Aligned_cols=115 Identities=19% Similarity=0.294 Sum_probs=95.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHcCCEEeecCCCceeEEEEccc-ChhhHHHHHhcCCCcEeehhHHHHHHHhcCccCcccc
Q 001761 104 KVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNV-LAAKYKWALNILKKPIVTVNWLYQCWNEHRVVPQESY 182 (1017)
Q Consensus 104 ~i~~tgl~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~-~s~KY~~A~~~~~i~IV~p~Wv~~c~~~~~~lp~~~y 182 (1017)
.+.++++. +...+...+..+||.+... ..+.||+|+... ++.|+..|+. .|+|||++.||.+|.+.|.+++.++|
T Consensus 661 ~~lfs~~~--~~~~~k~~~k~lg~s~~ss-~~e~Th~i~~rirRT~k~Leai~-~G~~ivT~~wL~s~~k~g~~~dek~y 736 (896)
T KOG2043|consen 661 EVLFSDKN--DGKNYKLAKKFLGGSVASS-DSEATHFIADRIRRTLKFLEAIS-SGKPLVTPQWLVSSLKSGEKLDEKPY 736 (896)
T ss_pred eeeeeecc--CchhhhhHHhhccceeecc-cccceeeeehhhhccHHHHhhhc-cCCcccchHHHHHHhhccccccCccc
Confidence 35555543 3445778899999998877 467899999854 6899999998 99999999999999999999887665
Q ss_pred c-----------------------ccCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCC
Q 001761 183 K-----------------------VLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTK 222 (1017)
Q Consensus 183 ~-----------------------~~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~ 222 (1017)
. -+.|.|..||++-........|-++|+..||.+.....+
T Consensus 737 il~D~ekEk~~gf~l~ssl~RAr~~plL~g~~v~vtp~v~p~~~~v~eiie~~ggnvv~~~p~ 799 (896)
T KOG2043|consen 737 ILHDEEKEKEFGFRLKSSLLRARADPLLEGINVHVTPSVTPSPKTVVEIIEISGGNVVSDSPK 799 (896)
T ss_pred cccCHHHHhccCcchhhHHHHhhcchhhcCceEEeccccccCcchhHHHHhhcCcceecccCc
Confidence 3 167899999999988888999999999999998877654
No 26
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.56 E-value=0.00014 Score=89.42 Aligned_cols=72 Identities=26% Similarity=0.265 Sum_probs=67.2
Q ss_pred CCCCeEEEEec-cChhhHHHHHHHHHHcCcEEeccccCcceEEEEccCChHHHHHHHcCCCceeChhHHHHHH
Q 001761 689 GFERFRFCVSQ-YEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLKYEAACKWGIPSITSEWIYECV 760 (1017)
Q Consensus 689 ~f~g~~i~~Sg-~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g~Ky~~A~~w~I~IV~~~WL~dc~ 760 (1017)
+|.|..|+||| +....|..++++++.+||++...+++++++||+....|.|+++|.+.||+|++.+.+.+-+
T Consensus 593 ~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 593 FLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSYV 665 (669)
T ss_pred ccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHHh
Confidence 49999999999 6677899999999999999999999999999999888999999999999999999988754
No 27
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.55 E-value=0.00025 Score=80.35 Aligned_cols=75 Identities=19% Similarity=0.084 Sum_probs=64.4
Q ss_pred CCCCCCeEEEEeccC-hhhHHHHHHHHHHcCcEEeccccCcceEEEEcc---------CChHHHHHHHcC-----CCcee
Q 001761 687 LPGFERFRFCVSQYE-EKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKF---------AGGLKYEAACKW-----GIPSI 751 (1017)
Q Consensus 687 i~~f~g~~i~~Sg~~-~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~---------~~g~Ky~~A~~w-----~I~IV 751 (1017)
..+|.|.+|+|||-. ...|..++.+++.+||++...+++++++||+.. ..|.|+++|++. +|+|+
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii 297 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFL 297 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEe
Confidence 456999999999944 679999999999999999999999999999984 347899999886 89999
Q ss_pred ChhHHHHHHH
Q 001761 752 TSEWIYECVR 761 (1017)
Q Consensus 752 ~~~WL~dc~~ 761 (1017)
+.+=+++-+.
T Consensus 298 ~E~~f~~l~~ 307 (309)
T PRK06195 298 NEEEFLQKCK 307 (309)
T ss_pred cHHHHHHHHh
Confidence 9776655443
No 28
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.48 E-value=0.00024 Score=80.46 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=66.0
Q ss_pred CCCCCeEEEEeccChhhHHHHHHHHHHcCcEEeccccCcceEEEEccCCh--HHHHHHHcCCCceeChhHHHHHH
Q 001761 688 PGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGG--LKYEAACKWGIPSITSEWIYECV 760 (1017)
Q Consensus 688 ~~f~g~~i~~Sg~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g--~Ky~~A~~w~I~IV~~~WL~dc~ 760 (1017)
+.+.|..|+|||=....|..++++++.+||++...+++++++|||....| .|.++|++.||+|++.+=+.+-+
T Consensus 231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 45789999999955579999999999999999999999999999998777 79999999999999988777655
No 29
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.00029 Score=84.83 Aligned_cols=72 Identities=22% Similarity=0.212 Sum_probs=67.6
Q ss_pred CCCCCeEEEEec-cChhhHHHHHHHHHHcCcEEeccccCcceEEEEccCChHHHHHHHcCCCceeChhHHHHH
Q 001761 688 PGFERFRFCVSQ-YEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLKYEAACKWGIPSITSEWIYEC 759 (1017)
Q Consensus 688 ~~f~g~~i~~Sg-~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g~Ky~~A~~w~I~IV~~~WL~dc 759 (1017)
.+|.|..|++|| +.+.-|..++.+++.+||+++...+++++.||+....|.|+++|++.||+|.+.+++.+-
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHHh
Confidence 569999999999 666899999999999999999999999999999999999999999999999999988764
No 30
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.42 E-value=0.00031 Score=86.88 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=68.6
Q ss_pred CCCCeEEEEeccCh-hhHHHHHHHHHHcCcEEeccccCcceEEEEccCChHHHHHHHcCCCceeChhHHHHHHHh
Q 001761 689 GFERFRFCVSQYEE-KDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLKYEAACKWGIPSITSEWIYECVRQ 762 (1017)
Q Consensus 689 ~f~g~~i~~Sg~~~-~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g~Ky~~A~~w~I~IV~~~WL~dc~~~ 762 (1017)
.|.|..|+|||... ..|..++.+++.+||+++..++++++.|||....|.|+++|++.||+|++.+-+++.+.+
T Consensus 590 ~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 590 DLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 49999999999764 599999999999999999999999999999988899999999999999999999887764
No 31
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.34 E-value=0.00046 Score=85.41 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=68.1
Q ss_pred CCCCeEEEEeccC-hhhHHHHHHHHHHcCcEEeccccCcceEEEEccCCh-HHHHHHHcCCCceeChhHHHHHHHh
Q 001761 689 GFERFRFCVSQYE-EKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGG-LKYEAACKWGIPSITSEWIYECVRQ 762 (1017)
Q Consensus 689 ~f~g~~i~~Sg~~-~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g-~Ky~~A~~w~I~IV~~~WL~dc~~~ 762 (1017)
+|.|..|||||.. ...|..++.+++.+||+++..+++++++||+....| .|+++|++.||+|++.+-+.+-+..
T Consensus 609 ~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 609 ALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 5999999999966 459999999999999999999999999999998778 8999999999999999999887765
No 32
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.25 E-value=0.00057 Score=84.25 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=66.2
Q ss_pred CCCCcEEEEcC-CChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccChhhHHHHHhcCCCcEeehhHHHHHHH
Q 001761 99 AMDGVKVIASG-FDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNWLYQCWN 172 (1017)
Q Consensus 99 ~~~G~~i~~tg-l~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s~KY~~A~~~~~i~IV~p~Wv~~c~~ 172 (1017)
+|.|.+||+|| |+.-.|.++.++|+++||++...++.+|++||++...+.|+..|.+ +||||++.+.+.+.+.
T Consensus 593 ~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~-LGI~Ii~e~~f~~~l~ 666 (669)
T PRK14350 593 FLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANN-LGIKIMSLFDIKSYVD 666 (669)
T ss_pred ccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHH-cCCEEecHHHHHHHhc
Confidence 48899999999 6666799999999999999999999999999999877899999998 9999999888877553
No 33
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.22 E-value=0.0005 Score=85.00 Aligned_cols=67 Identities=24% Similarity=0.246 Sum_probs=61.8
Q ss_pred CCCCeEEEEeccC-hhhHHHHHHHHHHcCcEEeccccCcceEEEEccCChHHHHHHHcCCCceeChhH
Q 001761 689 GFERFRFCVSQYE-EKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLKYEAACKWGIPSITSEW 755 (1017)
Q Consensus 689 ~f~g~~i~~Sg~~-~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g~Ky~~A~~w~I~IV~~~W 755 (1017)
+|.|..|||||.. ...|..++.+++.+||+++..+++++++||+....|.|+++|++.||+|++.+.
T Consensus 584 ~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 584 PLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 4999999999965 568999999999999999999999999999999889999999999999998653
No 34
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.16 E-value=0.00091 Score=75.85 Aligned_cols=75 Identities=17% Similarity=0.331 Sum_probs=63.2
Q ss_pred cCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEccc
Q 001761 185 LPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRK 264 (1017)
Q Consensus 185 ~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs~~ 264 (1017)
++|.|.+|+|||-....|.+++++|..+||++.+.++++++.||++. ....+.|.++|++.| |+|++.+
T Consensus 231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~----------~~~~ssK~~kA~~~g-i~ii~e~ 299 (313)
T PRK06063 231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCND----------PAPEQGKGYHARQLG-VPVLDEA 299 (313)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECC----------CCCcccHHHHHHHcC-CccccHH
Confidence 35789999999965579999999999999999999999999999964 122237999999996 9999987
Q ss_pred hHHHHH
Q 001761 265 WFDQSM 270 (1017)
Q Consensus 265 WL~dSi 270 (1017)
=|.+=+
T Consensus 300 ~f~~ll 305 (313)
T PRK06063 300 AFLELL 305 (313)
T ss_pred HHHHHH
Confidence 766544
No 35
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.15 E-value=0.00096 Score=75.61 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=61.4
Q ss_pred CCCCCcEEEEcC-CChhhHHHHHHHHHHcCCEEeecCCCceeEEEEccc---------ChhhHHHHHhcC-----CCcEe
Q 001761 98 LAMDGVKVIASG-FDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNV---------LAAKYKWALNIL-----KKPIV 162 (1017)
Q Consensus 98 ~~~~G~~i~~tg-l~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~---------~s~KY~~A~~~~-----~i~IV 162 (1017)
..|.|.+||+|| |..-.|.++.++|+.+||.+...++.+|++||++.. .+.|++.|.+ + +|+|+
T Consensus 219 ~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~-l~~~g~~i~ii 297 (309)
T PRK06195 219 TAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAID-LKKKGQNIKFL 297 (309)
T ss_pred ccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHH-HHhCCCCcEEe
Confidence 359999999999 556689999999999999999999999999999953 3679999987 5 99999
Q ss_pred ehhHHHHHH
Q 001761 163 TVNWLYQCW 171 (1017)
Q Consensus 163 ~p~Wv~~c~ 171 (1017)
+.+=+.+.+
T Consensus 298 ~E~~f~~l~ 306 (309)
T PRK06195 298 NEEEFLQKC 306 (309)
T ss_pred cHHHHHHHH
Confidence 865544443
No 36
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.09 E-value=0.0013 Score=81.61 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCCCCcEEEEcCC-ChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccCh-hhHHHHHhcCCCcEeehhHHHHHHHh
Q 001761 98 LAMDGVKVIASGF-DVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLA-AKYKWALNILKKPIVTVNWLYQCWNE 173 (1017)
Q Consensus 98 ~~~~G~~i~~tgl-~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s-~KY~~A~~~~~i~IV~p~Wv~~c~~~ 173 (1017)
..|.|.+||+||. ..-.|.++.++|+++||.+...++.+|++||++...+ .|...|.+ +||+|++.+-+.+.+++
T Consensus 608 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~-lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 608 DALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEA-NDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHH-CCCeEecHHHHHHHHHh
Confidence 3489999999994 4558999999999999999999999999999997666 79999998 99999999888887765
No 37
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.08 E-value=0.0012 Score=81.62 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=65.8
Q ss_pred CCCcEEEEcCC-ChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccChhhHHHHHhcCCCcEeehhHHHHHHHh
Q 001761 100 MDGVKVIASGF-DVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNWLYQCWNE 173 (1017)
Q Consensus 100 ~~G~~i~~tgl-~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s~KY~~A~~~~~i~IV~p~Wv~~c~~~ 173 (1017)
|.|.+||+||. +.-.|+++.++|+.+||.+...++.+|++||++...+.|...|.+ +||+|++..-+.+++..
T Consensus 591 ~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~-lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 591 LAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQE-LGIEVLDEEEFLRLLGE 664 (665)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHH-cCCeEEcHHHHHHHHhc
Confidence 88999999995 445899999999999999999999999999999877899999998 99999998888776653
No 38
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0016 Score=78.69 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=65.9
Q ss_pred CCCCCcEEEEcC-CChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccChhhHHHHHhcCCCcEeehhHHHHH
Q 001761 98 LAMDGVKVIASG-FDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNWLYQC 170 (1017)
Q Consensus 98 ~~~~G~~i~~tg-l~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s~KY~~A~~~~~i~IV~p~Wv~~c 170 (1017)
.+|.|.+|++|| |+.-.|.++..+++++||+++..++.++++||++..-+.|+..|.. +||+|++-+++...
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~e-Lgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQE-LGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHH-cCCeEecHHHHHHh
Confidence 569999999999 5667899999999999999999999999999999988889999999 99999998887654
No 39
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.89 E-value=0.0012 Score=76.42 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=60.5
Q ss_pred ccccCCCCCcEEEEcCCCChhhHHHHHHHHHcCCCEEEecCC----------CCceEEEEeeCCCccccccCCCCcEEeH
Q 001761 588 MKLSTVFRGKIFRFSNSFPEDRRAEIVQWVNQGRGEVVNDDA----------KQNVHFTIECHGVIPKSADASETTYVSS 657 (1017)
Q Consensus 588 ~~~~~iF~G~~F~i~~~f~~~~~~~l~~~I~~~GG~Vv~~~~----------~~~td~iI~~~~~~~~~~~~~~~~vVt~ 657 (1017)
..-..+|+|++|||+.+.. +..|.-+|..+||.|+-+.. ...||=||...+... ...+..+|-+
T Consensus 322 s~~kslF~glkFfl~reVP---resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~---~v~gR~YvQP 395 (570)
T KOG2481|consen 322 SSHKSLFSGLKFFLNREVP---RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQT---SVIGRTYVQP 395 (570)
T ss_pred hhHHHHhhcceeeeeccCc---hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccc---eeeeeeeecc
Confidence 3457899999999976554 56788889999999998841 123666665433321 1235678999
Q ss_pred HHHHHHHhhCcccCCCCC
Q 001761 658 HWIRSCLEDGCLLDVGSH 675 (1017)
Q Consensus 658 ~Wl~~Cl~~~~ll~~~~~ 675 (1017)
+||++|+..+.++|.+.+
T Consensus 396 QWvfDsvNar~llpt~~Y 413 (570)
T KOG2481|consen 396 QWVFDSVNARLLLPTEKY 413 (570)
T ss_pred hhhhhhccchhhccHhhh
Confidence 999999999999998864
No 40
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=96.89 E-value=0.0017 Score=80.42 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=61.0
Q ss_pred CCCCCcEEEEcC-CChhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccChhhHHHHHhcCCCcEeehhH
Q 001761 98 LAMDGVKVIASG-FDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPIVTVNW 166 (1017)
Q Consensus 98 ~~~~G~~i~~tg-l~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s~KY~~A~~~~~i~IV~p~W 166 (1017)
..|.|.+||+|| |..-.|.++.++|+++||.+...++.++++||++...+.|+..|.+ +||+|++.+.
T Consensus 583 ~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~-lgi~ii~E~~ 651 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQE-LGIPIINEEE 651 (652)
T ss_pred CCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHH-cCCcEechhh
Confidence 348999999999 4556899999999999999999999999999999877789999998 9999998653
No 41
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.49 E-value=0.0023 Score=74.11 Aligned_cols=91 Identities=19% Similarity=0.170 Sum_probs=65.0
Q ss_pred cCcCCCcEEEEecCChHHHHHHHHHHHhCCCEEEeec----------CCCceEEEEcCCChhhHHHHHHhhhcCCcEEEc
Q 001761 388 DLYLSDCRIVLVGFEASEMRKLVNMVRRGGGSRYVSY----------NNGLTHIVVGTLSEADKREVRSLASLGIIQVVK 457 (1017)
Q Consensus 388 ~~~L~gc~~yl~GF~~~e~~~L~~lI~~~GG~v~~~l----------s~~vTHIIv~~~~~~~~~~vr~~~~~~~i~vV~ 457 (1017)
.-+|+||.|||.- +-.+.-|.=+|+.+||.|..+. +..|||=||..+..... + -.-..|.
T Consensus 325 kslF~glkFfl~r--eVPresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~--v------~gR~YvQ 394 (570)
T KOG2481|consen 325 KSLFSGLKFFLNR--EVPRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTS--V------IGRTYVQ 394 (570)
T ss_pred HHHhhcceeeeec--cCchHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccce--e------eeeeeec
Confidence 3469999999973 1234567778999999998662 35789999888764321 0 1235789
Q ss_pred ccHHHHHHhhccccccccchhhccccCCcccc
Q 001761 458 STWLEDCDRERREISILQRHVAYDLLLPKESA 489 (1017)
Q Consensus 458 ~~WL~~Ci~~~~~l~e~~~~i~~e~l~p~~~~ 489 (1017)
|.|+.+|+.++.++|.+.|... .-|+|..++
T Consensus 395 PQWvfDsvNar~llpt~~Y~~G-~~LPpHlSP 425 (570)
T KOG2481|consen 395 PQWVFDSVNARLLLPTEKYFPG-KALPPHLSP 425 (570)
T ss_pred chhhhhhccchhhccHhhhCCC-ccCCcccCc
Confidence 9999999999999999887643 334444433
No 42
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.0044 Score=69.39 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=60.0
Q ss_pred ccccCCCCCcEEEEcCCCChhhHHHHHHHHHcCCCEEEecCCCC-----------ceEEEEeeCCCccccccCCCCcEEe
Q 001761 588 MKLSTVFRGKIFRFSNSFPEDRRAEIVQWVNQGRGEVVNDDAKQ-----------NVHFTIECHGVIPKSADASETTYVS 656 (1017)
Q Consensus 588 ~~~~~iF~G~~F~i~~~f~~~~~~~l~~~I~~~GG~Vv~~~~~~-----------~td~iI~~~~~~~~~~~~~~~~vVt 656 (1017)
....++|.|.+|||+..... ..|.-+|..|||.|+.++..+ .||-|+.. +.+.....+..+|.
T Consensus 345 Ss~~slFS~f~FyisreVp~---dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~dr---p~~~~kvegrtYiQ 418 (591)
T COG5163 345 SSLKSLFSGFKFYISREVPG---DSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDR---PVMKNKVEGRTYIQ 418 (591)
T ss_pred cchhhhhhceEEEEeccccc---hHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccc---hhhhhhhcceeeec
Confidence 44678999999999866553 346677899999999886432 23333210 00111234678999
Q ss_pred HHHHHHHHhhCcccCCCCCccCCCCC
Q 001761 657 SHWIRSCLEDGCLLDVGSHILYSPLH 682 (1017)
Q Consensus 657 ~~Wl~~Cl~~~~ll~~~~~~l~~Pl~ 682 (1017)
++||++||..|.+.+.+.+.-..-||
T Consensus 419 PQw~fDsiNkG~l~~~~~Y~~G~~LP 444 (591)
T COG5163 419 PQWLFDSINKGKLACVENYCVGKRLP 444 (591)
T ss_pred hHHHHhhhccccchhhhhccccccCC
Confidence 99999999999998887543333343
No 43
>COG5275 BRCT domain type II [General function prediction only]
Probab=95.85 E-value=0.023 Score=59.11 Aligned_cols=74 Identities=19% Similarity=0.133 Sum_probs=63.5
Q ss_pred CCCCCeEEEEeccCh-hhHHHHHHHHHHcCcEEeccccCcceEEEEccCCh-HHHHHHHcCCCceeChhHHHHHHH
Q 001761 688 PGFERFRFCVSQYEE-KDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGG-LKYEAACKWGIPSITSEWIYECVR 761 (1017)
Q Consensus 688 ~~f~g~~i~~Sg~~~-~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g-~Ky~~A~~w~I~IV~~~WL~dc~~ 761 (1017)
..|.|++|.|+|... ..|..-..|+..+||+++...+.++|.||.....| .|.+++++.+|++++.+=+..-|.
T Consensus 155 ~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~LI~ 230 (276)
T COG5275 155 ECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDSLIK 230 (276)
T ss_pred ccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHHHHh
Confidence 358999999999776 78999999999999999999999999999887554 689999999999988776654443
No 44
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=95.69 E-value=0.0048 Score=74.84 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=75.4
Q ss_pred CCCCCCeEEEEeccCh----hhHHHHHHHHHHcCcEEeccccCcceEEEEccCChHHHHHHHcCC-CceeChhHHHHHHH
Q 001761 687 LPGFERFRFCVSQYEE----KDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAGGLKYEAACKWG-IPSITSEWIYECVR 761 (1017)
Q Consensus 687 i~~f~g~~i~~Sg~~~----~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~g~Ky~~A~~w~-I~IV~~~WL~dc~~ 761 (1017)
...+.|+.+.|||..+ .++..+-.....+|+...+.++.++||+|...+...|..+|..-+ +.||++.|||.|+.
T Consensus 439 ~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e 518 (635)
T KOG0323|consen 439 TKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLE 518 (635)
T ss_pred hHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEechhHHHHHHH
Confidence 4457888888888543 344566677788999999999999999999999999988887755 99999999999999
Q ss_pred hCccCCCCCcCCCC
Q 001761 762 QNEVVSLDHFSPKE 775 (1017)
Q Consensus 762 ~g~~l~e~~y~~~~ 775 (1017)
+|..+.+..|....
T Consensus 519 ~w~~v~ek~~~l~~ 532 (635)
T KOG0323|consen 519 KWGKVEEKLEPLDD 532 (635)
T ss_pred Hhcchhcccccccc
Confidence 99999999987754
No 45
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.011 Score=66.27 Aligned_cols=80 Identities=20% Similarity=0.392 Sum_probs=63.6
Q ss_pred CCCCeEEEEeccChhhHHHHHHHHHHcCcEEec-----------cccCcceEEEEccCC-hHHHHHHHcCCCceeChhHH
Q 001761 689 GFERFRFCVSQYEEKDRVLLRNLCFVLGAKFME-----------KLTKKVTHLLCKFAG-GLKYEAACKWGIPSITSEWI 756 (1017)
Q Consensus 689 ~f~g~~i~~Sg~~~~er~~l~~li~~lGg~~~~-----------~l~~~~THLI~~~~~-g~Ky~~A~~w~I~IV~~~WL 756 (1017)
.|+|+++.++.=.+ +..|..+|..+||.+.. ..+.++||-||..|. ..||+ |..-|.+.||
T Consensus 350 lFS~f~FyisreVp--~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kve-----grtYiQPQw~ 422 (591)
T COG5163 350 LFSGFKFYISREVP--GDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKVE-----GRTYIQPQWL 422 (591)
T ss_pred hhhceEEEEecccc--chHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhhc-----ceeeechHHH
Confidence 58999999987433 34678889999999752 345578999998764 45554 4578899999
Q ss_pred HHHHHhCccCCCCCcCCCC
Q 001761 757 YECVRQNEVVSLDHFSPKE 775 (1017)
Q Consensus 757 ~dc~~~g~~l~e~~y~~~~ 775 (1017)
+||+-+|.+.+.+.|.+..
T Consensus 423 fDsiNkG~l~~~~~Y~~G~ 441 (591)
T COG5163 423 FDSINKGKLACVENYCVGK 441 (591)
T ss_pred Hhhhccccchhhhhccccc
Confidence 9999999999999998864
No 46
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=95.43 E-value=0.0085 Score=72.72 Aligned_cols=93 Identities=22% Similarity=0.315 Sum_probs=78.4
Q ss_pred ccCCCCceEEEecCCh----hhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCee
Q 001761 184 VLPFSGLMICVTRIPA----DERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIH 259 (1017)
Q Consensus 184 ~~~F~Gl~I~~tG~~~----~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~ 259 (1017)
...+.||.+.|+|+.+ .++..+-.....+|.....++...+||+|. ..+...|...|...+.++
T Consensus 439 ~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~------------~~~gt~k~~~a~~~~~~~ 506 (635)
T KOG0323|consen 439 TKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIA------------ANAGTKKVYKAVVSGSAK 506 (635)
T ss_pred hHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHh------------hccCcceeecccccccee
Confidence 3568899999999743 455677778888999999999999999999 567778888887766799
Q ss_pred EEccchHHHHHHhccCCCCCccccCCCCc
Q 001761 260 IINRKWFDQSMARRACLNEESYTVQDSSV 288 (1017)
Q Consensus 260 IVs~~WL~dSi~~g~~lde~~Y~~~~~~~ 288 (1017)
||+..|+|.|+.++..++|..|.+.....
T Consensus 507 Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~ 535 (635)
T KOG0323|consen 507 VVNAAWLWRSLEKWGKVEEKLEPLDDDQR 535 (635)
T ss_pred EechhHHHHHHHHhcchhccccccccccc
Confidence 99999999999999999999998875543
No 47
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.42 E-value=0.02 Score=72.58 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=66.9
Q ss_pred eEEEEeccChhhHHHHHHHHHHcCcEEeccccCcceEEEEcc-CChHHHHHHHcCCCceeChhHHHHHHHhCccCCCCCc
Q 001761 693 FRFCVSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKF-AGGLKYEAACKWGIPSITSEWIYECVRQNEVVSLDHF 771 (1017)
Q Consensus 693 ~~i~~Sg~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~-~~g~Ky~~A~~w~I~IV~~~WL~dc~~~g~~l~e~~y 771 (1017)
..+-|+++. +...++..++.+|+.+..... ..||+|+.. ....|+--|...|++||+.+||.+|++.|..++++.|
T Consensus 660 ~~~lfs~~~--~~~~~k~~~k~lg~s~~ss~~-e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~y 736 (896)
T KOG2043|consen 660 IEVLFSDKN--DGKNYKLAKKFLGGSVASSDS-EATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPY 736 (896)
T ss_pred eeeeeeecc--CchhhhhHHhhccceeecccc-cceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCccc
Confidence 445666664 445688999999988887754 689999875 4577888899999999999999999999999999999
Q ss_pred CCCCC
Q 001761 772 SPKEV 776 (1017)
Q Consensus 772 ~~~~~ 776 (1017)
.+...
T Consensus 737 il~D~ 741 (896)
T KOG2043|consen 737 ILHDE 741 (896)
T ss_pred cccCH
Confidence 88754
No 48
>COG5275 BRCT domain type II [General function prediction only]
Probab=95.16 E-value=0.056 Score=56.39 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=62.3
Q ss_pred cCCCCCcEEEEcCCC-hhhHHHHHHHHHHcCCEEeecCCCceeEEEEcccCh-hhHHHHHhcCCCcEeehhHHHHHHH
Q 001761 97 CLAMDGVKVIASGFD-VDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLA-AKYKWALNILKKPIVTVNWLYQCWN 172 (1017)
Q Consensus 97 ~~~~~G~~i~~tgl~-~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~~s-~KY~~A~~~~~i~IV~p~Wv~~c~~ 172 (1017)
..+|.|++|.|||.- .-.|..-..+|..+||++.......+|+|+.++.-+ .|.+.+.+ ++|+.+..+-++..+.
T Consensus 154 ~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKq-lkIkaidEegf~~LI~ 230 (276)
T COG5275 154 RECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQ-LKIKAIDEEGFDSLIK 230 (276)
T ss_pred cccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHH-hCCccccHHHHHHHHh
Confidence 456889999999964 467888899999999999999999999999997655 56667776 9999998777776554
No 49
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=93.08 E-value=0.057 Score=66.43 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=107.7
Q ss_pred cCCCCCcEEEEcCCChhhHHHHHHHHHHcCCEEe-ecCCCceeEEEEcccChhhHHHHHhcCCCcE-eehhHHHHHHHhc
Q 001761 97 CLAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQ-TKATLDVSFVIVKNVLAAKYKWALNILKKPI-VTVNWLYQCWNEH 174 (1017)
Q Consensus 97 ~~~~~G~~i~~tgl~~~ek~~l~~lI~~mGG~~~-~~lt~~vTHLI~~~~~s~KY~~A~~~~~i~I-V~p~Wv~~c~~~~ 174 (1017)
...|.|+-+|..|-..+...++...-..+||.+. ...-+.++|+|+......+.+ ...+|. ..+.|+-+|.+.+
T Consensus 45 ~s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk----~~~~~~~~~~e~iie~~~~~ 120 (1016)
T KOG2093|consen 45 SSSFSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVK----GFTIPKHISIEWIIECCENG 120 (1016)
T ss_pred cceeeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccchHHHhc----cccchhhhcHHHHHHHHhcc
Confidence 4568999999988666667778888888899988 667788999999876444432 245554 4899999999999
Q ss_pred CccCcccc-----------------------------cccCCCCceEEEecCChhhHHHHH-HHHHHhCCeecCC--CCC
Q 001761 175 RVVPQESY-----------------------------KVLPFSGLMICVTRIPADERKEME-KLIVQNGGKYSPE--LTK 222 (1017)
Q Consensus 175 ~~lp~~~y-----------------------------~~~~F~Gl~I~~tG~~~~~r~~l~-~lI~~~GG~~~~~--l~~ 222 (1017)
..+.+.+| ..++|.+++|.+.|+...++-.++ .....+++..... +..
T Consensus 121 ~~~~~~~~~~~t~~~h~q~~~~~~~~~~~~D~q~~~~~~ki~~~n~ikinG~~E~~~~dlepp~gv~~d~~~~~~~~~rd 200 (1016)
T KOG2093|consen 121 MDVGYYPYQLYTGQSHEQAQLAFPVTSFPKDQQISSQSSKIFKNNVIKINGYNEPESLDLEPPSGVLHDKAEDDSTSARD 200 (1016)
T ss_pred CccccccceeeccchhcccccCCCcccCCccccccccchhccccceeeecCCCCccccccCCCcccccchhhhhhhhHHH
Confidence 87643221 135799999999999866553333 1111122222211 223
Q ss_pred CcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEccchHHHHHHhccCCCCCccc
Q 001761 223 KCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRKWFDQSMARRACLNEESYT 282 (1017)
Q Consensus 223 ~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs~~WL~dSi~~g~~lde~~Y~ 282 (1017)
.++|-+.+. .. -+|. +-++..++|+|+.+.+..-.......|.
T Consensus 201 ~v~~~l~~~-----------~l-~n~~-----f~n~~~~sP~~~~~k~~~a~~~~~~~~S 243 (1016)
T KOG2093|consen 201 HVDHELAGN-----------LL-LNKR-----FVNIENTSPDWIVDKELTAHTGTGQNYS 243 (1016)
T ss_pred HHHHHhccc-----------cc-cccc-----cceeeecCchhhhhhhhhhccCCccccc
Confidence 455655521 00 0111 1147899999999998876666666655
No 50
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=86.41 E-value=2.2 Score=49.33 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCCCeEEEEeccChhhHHHHHHHHHHcCcEEeccccCcceEEEEccCC--hHHHHHHHcCCCceeChhHHHHHHH
Q 001761 688 PGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFMEKLTKKVTHLLCKFAG--GLKYEAACKWGIPSITSEWIYECVR 761 (1017)
Q Consensus 688 ~~f~g~~i~~Sg~~~~er~~l~~li~~lGg~~~~~l~~~~THLI~~~~~--g~Ky~~A~~w~I~IV~~~WL~dc~~ 761 (1017)
+.-+|+.|.+++=...+++.|...+...|-.|++++++.+..|||..+. .-|-..|...|||+++-.=..+++.
T Consensus 293 ~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 293 GLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred ccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999854 5677788899999999776666654
No 51
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=79.79 E-value=3.7 Score=47.51 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=65.4
Q ss_pred cCCCCceEEEecCChhhHHHHHHHHHHhCCeecCCCCCCcceEEeccccccccccCCCCCCchhHHHHHhcCCeeEEccc
Q 001761 185 LPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRK 264 (1017)
Q Consensus 185 ~~F~Gl~I~~tG~~~~~r~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~~g~I~IVs~~ 264 (1017)
++-.|+.|.|+|=...+++.|...+...|=.|+..+++.++-|||+. ..+...|...|.+.| |++++..
T Consensus 293 ~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~----------~~~~~gk~~~a~~~g-ipl~~d~ 361 (377)
T PRK05601 293 GLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQ----------TRDLDGKAMHAQRKG-IPLLSDV 361 (377)
T ss_pred ccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCC----------CCCccchhhhhhhcC-CCccCHH
Confidence 45679999999998899999999999999999999999999999964 234456777888776 9999988
Q ss_pred hHHHHHHh
Q 001761 265 WFDQSMAR 272 (1017)
Q Consensus 265 WL~dSi~~ 272 (1017)
=|.+.+..
T Consensus 362 ~fl~~~~~ 369 (377)
T PRK05601 362 AFLAAVER 369 (377)
T ss_pred HHHHHHHH
Confidence 88777665
No 52
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=63.23 E-value=10 Score=47.68 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=68.3
Q ss_pred CCCCCCCeEEEEeccChhhHHHHHHHHHHcCcEEe-ccccCcceEEEEccCChHHHHHHHcCCC-ceeChhHHHHHHHhC
Q 001761 686 PLPGFERFRFCVSQYEEKDRVLLRNLCFVLGAKFM-EKLTKKVTHLLCKFAGGLKYEAACKWGI-PSITSEWIYECVRQN 763 (1017)
Q Consensus 686 pi~~f~g~~i~~Sg~~~~er~~l~~li~~lGg~~~-~~l~~~~THLI~~~~~g~Ky~~A~~w~I-~IV~~~WL~dc~~~g 763 (1017)
....|+++-||.-|+.....+.++..-...|+.+. ......++|+||......+.+ ...+ ...+.+|+.+|++.|
T Consensus 44 ~~s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk---~~~~~~~~~~e~iie~~~~~ 120 (1016)
T KOG2093|consen 44 GSSSFSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVK---GFTIPKHISIEWIIECCENG 120 (1016)
T ss_pred CcceeeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccchHHHhc---cccchhhhcHHHHHHHHhcc
Confidence 45679999999999888888888999999999988 555557889999875433322 2334 467899999999999
Q ss_pred ccCCCCCcCCCCC
Q 001761 764 EVVSLDHFSPKEV 776 (1017)
Q Consensus 764 ~~l~e~~y~~~~~ 776 (1017)
+.+...+|.....
T Consensus 121 ~~~~~~~~~~~t~ 133 (1016)
T KOG2093|consen 121 MDVGYYPYQLYTG 133 (1016)
T ss_pred Cccccccceeecc
Confidence 9999888866544
No 53
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=45.85 E-value=17 Score=41.86 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=46.5
Q ss_pred cccCCCCCcEEEEcCCChhhHHHHHHHHHHcCCEEeecCCCceeEEEEccc
Q 001761 95 TCCLAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNV 145 (1017)
Q Consensus 95 p~~~~~~G~~i~~tgl~~~ek~~l~~lI~~mGG~~~~~lt~~vTHLI~~~~ 145 (1017)
.||.+|..+.++.-|.++..+..+.+.+..+||.+..-++..|||+|+...
T Consensus 118 ~Y~~aFp~f~fY~dn~s~~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR~ 168 (468)
T COG5067 118 TYCCAFPAFKFYKDNKSGKRKHRVKEGFCELGAVVFTFFEEHVTHFITRRF 168 (468)
T ss_pred hhhcccchhhhhhcCCCHHHHHHHHHHHHHhhhhhheeeccceEEEEEeee
Confidence 468899999999999998888999999999999999999999999999743
No 54
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=40.10 E-value=20 Score=41.28 Aligned_cols=51 Identities=6% Similarity=0.087 Sum_probs=45.5
Q ss_pred cCcCCCcEEEEecCChHHHHHHHHHHHhCCCEEEeecCCCceEEEEcCCCh
Q 001761 388 DLYLSDCRIVLVGFEASEMRKLVNMVRRGGGSRYVSYNNGLTHIVVGTLSE 438 (1017)
Q Consensus 388 ~~~L~gc~~yl~GF~~~e~~~L~~lI~~~GG~v~~~ls~~vTHIIv~~~~~ 438 (1017)
-+.|....||+.|.+...+..+++-+..+||.|+.-.+..|||+|.....+
T Consensus 120 ~~aFp~f~fY~dn~s~~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR~~~ 170 (468)
T COG5067 120 CCAFPAFKFYKDNKSGKRKHRVKEGFCELGAVVFTFFEEHVTHFITRRFAK 170 (468)
T ss_pred hcccchhhhhhcCCCHHHHHHHHHHHHHhhhhhheeeccceEEEEEeeecc
Confidence 456888899999999999999999999999999999999999999877543
No 55
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=25.48 E-value=1.7e+02 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=30.5
Q ss_pred EEEEcCCChhhHHHHHHHHHHcCCEEeecCCCceeE
Q 001761 104 KVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSF 139 (1017)
Q Consensus 104 ~i~~tgl~~~ek~~l~~lI~~mGG~~~~~lt~~vTH 139 (1017)
.|.++|++++..+.+..-....|......++.....
T Consensus 3 wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~~~~~~ 38 (53)
T PF14605_consen 3 WISVSGFPPDLAEEVLEHFASFGEIVDIYVPESTNW 38 (53)
T ss_pred EEEEEeECchHHHHHHHHHHhcCCEEEEEcCCCCcE
Confidence 588999999999999999999999999888844433
No 56
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.78 E-value=8.9e+02 Score=29.04 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=65.1
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHCCCEEEEccCCCCCCCCcEEEEcC---CChhhhHHHHhcCCCeeC-hHHHHHHH
Q 001761 8 KEAKVYMSRNLVAPEIFDALLDALKLNGAEVELCCDPSRTGPNDFHVISS---SDHEKFEDLRAKGCNLLG-PQCVLSCA 83 (1017)
Q Consensus 8 ~~~~v~is~~~l~~~~~~~l~~~i~~~GG~v~~~~~~s~~~~~d~~Iia~---~~~~~f~~l~~~~~~Iv~-P~wv~~c~ 83 (1017)
.|++|.+.... +.+....+.+.++.+|.+++....+......|..|++. ...+.+..+++.+++|++ +.++....
T Consensus 38 ~G~~V~~~d~~-~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~ 116 (480)
T PRK01438 38 LGARVTVVDDG-DDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLR 116 (480)
T ss_pred CCCEEEEEeCC-chhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhh
Confidence 46777665322 23344456677888998887543322223467777764 356777888889999997 45543333
Q ss_pred HhCCCCCCCCCcccCCCCCcEEEEcCCCh--hhHHHHHHHHHHcCCE
Q 001761 84 KENRALPKQGFTCCLAMDGVKVIASGFDV--DEKFKIEKLVTAMGGV 128 (1017)
Q Consensus 84 ~~~~~lp~~~~p~~~~~~G~~i~~tgl~~--~ek~~l~~lI~~mGG~ 128 (1017)
... .+.-+|.+||-.. .....|..+.+..|-.
T Consensus 117 ~~~-------------~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~ 150 (480)
T PRK01438 117 DPD-------------RPAPWLAVTGTNGKTTTVQMLASMLRAAGLR 150 (480)
T ss_pred hcc-------------CCCCEEEEeCCCcHHHHHHHHHHHHHHcCCC
Confidence 211 1123789999652 3556677777776654
Done!