Query 001761
Match_columns 1017
No_of_seqs 432 out of 1960
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 15:48:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001761.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1060-1064//hhsearch_pdb/001761hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3olc_X DNA topoisomerase 2-bin 1.0 1 1 344.8 29.9 263 10-287 9-288 (298)
2 3olc_X DNA topoisomerase 2-bin 1.0 1 1 243.8 26.4 254 111-479 19-285 (298)
3 1l0b_A BRCA1; TANDEM-BRCT, thr 1.0 1 1 201.5 17.9 204 185-479 3-213 (229)
4 1t15_A Breast cancer type 1 su 1.0 1 1 196.0 17.1 201 188-478 3-210 (214)
5 2nte_A BARD-1, BRCA1-associate 1.0 1 1 194.1 15.4 86 189-284 2-87 (210)
6 3u3z_A Microcephalin; DNA repa 1.0 1 1 189.7 16.3 85 189-285 11-96 (199)
7 3ii6_X DNA ligase 4; XRCC4, NH 1.0 1 1 188.6 18.6 241 184-478 8-263 (263)
8 1l0b_A BRCA1; TANDEM-BRCT, thr 1.0 1 1 186.0 16.4 179 98-286 3-215 (229)
9 3ii6_X DNA ligase 4; XRCC4, NH 1.0 1 1 185.4 20.2 241 2-283 6-263 (263)
10 1kzy_C Tumor suppressor P53-bi 1.0 1 1 181.1 17.3 153 115-279 60-247 (259)
No 1
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=1.00 E-value=1 Score=344.79 Aligned_cols=263 Identities=28% Similarity=0.555 Sum_probs=229.4
Q ss_pred CEE-EEECCCCCHHHHHHHHHHHHHCCCEEE---EC---CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCEECHHHHHHH
Q ss_conf 239-995799997889999999997899899---90---38999999967997499705369988419973084899999
Q 001761 10 AKV-YMSRNLVAPEIFDALLDALKLNGAEVE---LC---CDPSRTGPNDFHVISSSDHEKFEDLRAKGCNLLGPQCVLSC 82 (1017)
Q Consensus 10 ~~v-~is~~~l~~~~~~~l~~~i~~~GG~v~---~~---~~~s~~~~~d~~Iia~~~~~~f~~l~~~~~~IvgP~wi~~c 82 (1017)
+-| ||-... ..+++.+.-+.++.|+++-+ +. +........++||+.+|.++.|++|++.+++|+||+||.+|
T Consensus 9 ~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~~F~g~~f~~l~~~~~~iv~p~~v~~c 87 (298)
T 3olc_X 9 FFVKFLKSSD-NSKCFFKALESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVVFDHLKKLGCRIVGPQVVIFC 87 (298)
T ss_dssp CCEEEEECSS-CCHHHHHHHHHHHHHSCGGGEEEEEHHHHTTCCSCCSCEEECSSSCSHHHHHHHHHTCEEECHHHHHHH
T ss_pred EEEEEHHHCC-CCHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCEECHHHHHHH
T ss_conf 5898713045-649999999999985587663773389995078999819994697987899998779988777999999
Q ss_pred HHHCCCCCCCCCC-CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCE
Q ss_conf 9929999999875-337899839999079934499999999981999931279960499993567256999984099869
Q 001761 83 AKENRALPKQGFT-CCLAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILKKPI 161 (1017)
Q Consensus 83 ~~~~~~lp~~~~~-~~~~l~g~~i~~tgl~~~ek~~I~~lI~~mGG~~~~~lt~~vThLIa~~~~s~KY~~A~~~~~ipI 161 (1017)
++++++||..++| |+.+|.|++||+||+.++++..|.++|..|||.+..+++.++||||+.+..+.||+.|.+ .++||
T Consensus 88 ~~~~~~lp~~~~P~y~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~-~gi~I 166 (298)
T 3olc_X 88 MHHQRCVPRAEHPVYNMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAAN-LKKPI 166 (298)
T ss_dssp HHTTCCCCCCSSCBCCCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHH-TTCCE
T ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEECCCCHHHHHHHH-CCCEE
T ss_conf 98497379988855001148809996798277699999999988999906768971699982799848999987-79809
Q ss_pred EEHHHHHHHHHHCCCCC--------CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEECCCCC-CCCCEEEECCC
Q ss_conf 62347899987147557--------6666645777815999437911599999999981992258878-98635983366
Q 001761 162 VTVNWLYQCWNEHRVVP--------QESYKVLPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELT-KKCTHLICDIS 232 (1017)
Q Consensus 162 Vtp~WI~~c~~~~~~lp--------~~~y~~~~F~Gl~I~~tG~~~~er~~l~~lI~~~GG~~~~~l~-~~~THLIv~~~ 232 (1017)
|+++||.+||..++.++ .++|+.++|.|++||++|+...+|..|+.+|..+||+|+..++ ++|||||+.
T Consensus 167 V~~~Wl~~c~~~~~~~~~~~~~~~~~~~~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~-- 244 (298)
T 3olc_X 167 LLPSWIKTLWEKSQEKKITRYTDINMEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQ-- 244 (298)
T ss_dssp ECHHHHHHHHHHHHTTCCSSGGGSCGGGGBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECS--
T ss_pred EEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECEECCCCCEEEEEE--
T ss_conf 619999999974886773223545633246653488179993887832999999999859999450058885599980--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 4310135889998346799996099169753369999971337899765467898
Q 001761 233 FTIYFLNFPYTPEGDKFKVAKRWGHIHIINRKWFDQSMARRACLNEESYTVQDSS 287 (1017)
Q Consensus 233 ~~~~~~~~~~~~~g~K~~~A~~wg~I~IV~~~Wl~dSi~~g~~lde~~Y~~~~~~ 287 (1017)
.+.+.||..|++|| |+||+++||+||+++|.++||+.|.+....
T Consensus 245 ----------~~~g~K~~~A~~~g-i~IV~~~Wl~dsi~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 245 ----------EPKGQKYECAKRWN-VHCVTTQWFFDSIEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp ----------SSCSHHHHHHHHTT-CEEECHHHHHHHHHHTSCCCGGGSBSCC--
T ss_pred ----------CCCCHHHHHHHHCC-CEEEEHHHHHHHHHCCCCCCCHHCCCCCCC
T ss_conf ----------79866999999789-919829999999977998891316789983
No 2
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=1.00 E-value=1 Score=243.75 Aligned_cols=254 Identities=18% Similarity=0.218 Sum_probs=206.3
Q ss_pred CHHHHHHHHHHHHHCCCE-EEEC--------CC-CCEEEEEECCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCC
Q ss_conf 934499999999981999-9312--------79-9604999935672569999840998696234789998714755766
Q 001761 111 DVDEKFKIEKLVTAMGGV-LQTK--------AT-LDVSFVIVKNVLAAKYKWALNILKKPIVTVNWLYQCWNEHRVVPQE 180 (1017)
Q Consensus 111 ~~~ek~~I~~lI~~mGG~-~~~~--------lt-~~vThLIa~~~~s~KY~~A~~~~~ipIVtp~WI~~c~~~~~~lp~~ 180 (1017)
..++.-.-.+.+..|++. |..- +. +.-++.|.....++.|..+.+ .+++|+.|.||.+|.+.++.+|..
T Consensus 19 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~~F~g~~f~~l~~-~~~~iv~p~~v~~c~~~~~~lp~~ 97 (298)
T 3olc_X 19 NSKCFFKALESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVVFDHLKK-LGCRIVGPQVVIFCMHHQRCVPRA 97 (298)
T ss_dssp CCHHHHHHHHHHHHHSCGGGEEEEEHHHHTTCCSCCSCEEECSSSCSHHHHHHHH-HTCEEECHHHHHHHHHTTCCCCCC
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCCEEEEECCCCCHHHHHHHH-CCCCEECHHHHHHHHHHCCCCCCC
T ss_conf 6499999999999855876637733899950789998199946979878999987-799887779999999849737998
Q ss_pred CCCC--CCCCCCEEEEECCCHHHHHHHHHHHHHHCCEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCE
Q ss_conf 6664--57778159994379115999999999819922588789863598336643101358899983467999960991
Q 001761 181 SYKV--LPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHI 258 (1017)
Q Consensus 181 ~y~~--~~F~Gl~I~~tG~~~~er~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~wg~I 258 (1017)
++.+ .+|.|++||++|+...+|..+..+|..+||.+...++.++||||++ ...+.||..|.+.| +
T Consensus 98 ~~P~y~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~------------~~~t~Ky~~A~~~g-i 164 (298)
T 3olc_X 98 EHPVYNMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAG------------EVGSKKYLVAANLK-K 164 (298)
T ss_dssp SSCBCCCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEES------------SSCSHHHHHHHHTT-C
T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEE------------CCCCHHHHHHHHCC-C
T ss_conf 8855001148809996798277699999999988999906768971699982------------79984899998779-8
Q ss_pred EEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 69753369999971337899765467898543223357421124200111678889996311132233467776773012
Q 001761 259 HIINRKWFDQSMARRACLNEESYTVQDSSVSSKKTVMGSLTKQHSQVKVIGNALSAPSSMATESNLLSVSCTGFADQDLE 338 (1017)
Q Consensus 259 ~IV~~~Wl~dSi~~g~~lde~~Y~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~s~~s~~~~ds~~~~i~~~~~~~~D~~ 338 (1017)
+||+++||.+|+..+..++...|.-.
T Consensus 165 ~IV~~~Wl~~c~~~~~~~~~~~~~~~------------------------------------------------------ 190 (298)
T 3olc_X 165 PILLPSWIKTLWEKSQEKKITRYTDI------------------------------------------------------ 190 (298)
T ss_dssp CEECHHHHHHHHHHHHTTCCSSGGGS------------------------------------------------------
T ss_pred EEEEHHHHHHHHHCCCCCCCCCCCCC------------------------------------------------------
T ss_conf 09619999999974886773223545------------------------------------------------------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 20036889767897654457777789633457878763434788877786767985999926794899999999992898
Q 001761 339 ATFSQSMPSMYMDAPVVSKDGAIEAPTAQTRNESNSDVCVANDSQSEDNDLYLSDCRIVLVGFEASEMRKLVNMVRRGGG 418 (1017)
Q Consensus 339 ~t~s~~~~s~~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~gc~iyl~GF~~~e~~~l~~lI~~~GG 418 (1017)
+ .. .....+|.||.|++.||...++..+.++|..+||
T Consensus 191 -------------------------~-~~-----------------~~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG 227 (298)
T 3olc_X 191 -------------------------N-ME-----------------DFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGG 227 (298)
T ss_dssp -------------------------C-GG-----------------GGBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTC
T ss_pred -------------------------C-CC-----------------CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf -------------------------6-33-----------------2466534881799938878329999999998599
Q ss_pred EEEEECC-CCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCCCCHHH
Q ss_conf 8873049-980299986787354999998550598279743278999862344562100000
Q 001761 419 SRYVSYN-NGLTHIVVGTLSEADKREVRSLASLGIIQVVKSTWLEDCDRERREISILQRHVA 479 (1017)
Q Consensus 419 tv~~~~s-~~vTHIIv~~~~~~~~~~vr~~~~~~~i~vV~~~WL~~Ci~~~~~l~e~~~~i~ 479 (1017)
++...++ .++||+|++..........+ ...+++|++.||++|++.++++||++|.+.
T Consensus 228 ~~~~~ls~~~~THLI~~~~~g~K~~~A~----~~gi~IV~~~Wl~dsi~~g~~lde~~Y~l~ 285 (298)
T 3olc_X 228 QYMGQLKMNECTHLIVQEPKGQKYECAK----RWNVHCVTTQWFFDSIEKGFCQDESIYKTE 285 (298)
T ss_dssp EECSSCCTTTCCEEECSSSCSHHHHHHH----HTTCEEECHHHHHHHHHHTSCCCGGGSBSC
T ss_pred EEECEECCCCCEEEEEECCCCHHHHHHH----HCCCEEEEHHHHHHHHHCCCCCCCHHCCCC
T ss_conf 9945005888559998079866999999----789919829999999977998891316789
No 3
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=1.00 E-value=1 Score=201.51 Aligned_cols=204 Identities=16% Similarity=0.189 Sum_probs=131.8
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHCCEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCC
Q ss_conf 57778159994379115999999999819922588789863598336643101358899983467999960991697533
Q 001761 185 LPFSGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRK 264 (1017)
Q Consensus 185 ~~F~Gl~I~~tG~~~~er~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~wg~I~IV~~~ 264 (1017)
..+.+++||+||+...++..+..++..+||.+..+++..|||||+...... ....+.||..|..+| ++||+++
T Consensus 3 ~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~------~~~rt~K~~~a~~~g-~~IV~~~ 75 (229)
T 1l0b_A 3 RAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEF------VCERTLKYFLGIAGG-KWIVSYS 75 (229)
T ss_dssp CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTS------EECCCHHHHHHHHTT-CEEEETH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCC------CCCCCHHHHHHHHCC-CCEECHH
T ss_conf 777875999858998999999999998099995876999878997378654------435659999999889-9096699
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 69999971337899765467898543223357421124200111678889996311132233467776773012200368
Q 001761 265 WFDQSMARRACLNEESYTVQDSSVSSKKTVMGSLTKQHSQVKVIGNALSAPSSMATESNLLSVSCTGFADQDLEATFSQS 344 (1017)
Q Consensus 265 Wl~dSi~~g~~lde~~Y~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~s~~s~~~~ds~~~~i~~~~~~~~D~~~t~s~~ 344 (1017)
||.+|++.|.+++|+.|.+........ . . +
T Consensus 76 Wl~~~~~~~~~~~e~~y~~~~~~~~~~----------~------------------~--------------~-------- 105 (229)
T 1l0b_A 76 WVIKSIQERKLLSVHEFEVKGDVVTGS----------N------------------H--------------Q-------- 105 (229)
T ss_dssp HHHHHHTTTSCCCSGGGBCCEETTTCS----------S------------------S--------------C--------
T ss_pred HHHHHHHCCCCCCHHHEEECCCCCCCC----------C------------------C--------------C--------
T ss_conf 999999878827817757525414553----------3------------------4--------------6--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 89767897654457777789633457878763434788877786767985999926-79489999999999289888730
Q 001761 345 MPSMYMDAPVVSKDGAIEAPTAQTRNESNSDVCVANDSQSEDNDLYLSDCRIVLVG-FEASEMRKLVNMVRRGGGSRYVS 423 (1017)
Q Consensus 345 ~~s~~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~gc~iyl~G-F~~~e~~~l~~lI~~~GGtv~~~ 423 (1017)
. |..... ....+|.||.||+.| |....+..|.++|+.+||++...
T Consensus 106 -------~-----------~~~~r~----------------~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~ 151 (229)
T 1l0b_A 106 -------G-----------PRRSRE----------------SQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKE 151 (229)
T ss_dssp -------H-----------HHHHHH----------------HC--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECS
T ss_pred -------C-----------CHHHHH----------------HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECC
T ss_conf -------5-----------066554----------------246664696699972578989999999999789989688
Q ss_pred CCC-----CCEEEEECCCCH-HHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCCCCHHH
Q ss_conf 499-----802999867873-54999998550598279743278999862344562100000
Q 001761 424 YNN-----GLTHIVVGTLSE-ADKREVRSLASLGIIQVVKSTWLEDCDRERREISILQRHVA 479 (1017)
Q Consensus 424 ~s~-----~vTHIIv~~~~~-~~~~~vr~~~~~~~i~vV~~~WL~~Ci~~~~~l~e~~~~i~ 479 (1017)
+.. ..+|+|+..... .+...++.++....+.+|+++||++|+..++++++++|.+.
T Consensus 152 ~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 152 LPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp SSCGGGCCSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCCGGGGBCC
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCCEECC
T ss_conf 13466557985399980884100225999998759908602389998863886896364734
No 4
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=1.00 E-value=1 Score=195.98 Aligned_cols=201 Identities=16% Similarity=0.196 Sum_probs=115.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCHHH
Q ss_conf 78159994379115999999999819922588789863598336643101358899983467999960991697533699
Q 001761 188 SGLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRKWFD 267 (1017)
Q Consensus 188 ~Gl~I~~tG~~~~er~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~wg~I~IV~~~Wl~ 267 (1017)
.+++|+++|+...++..+.+++..+||.+..+++..|||||+...... ....+.||..|...| ++||+++||.
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~------~~~rt~k~~~a~~~g-~~IV~~~Wl~ 75 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEF------VCERTLKYFLGIAGG-KWVVSYFWVT 75 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTS------EECCBHHHHHHHHTT-CEEEETHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEECCCCC------CHHHHHHHHHHHHCC-CEEECHHHHH
T ss_conf 768999789998999999999999499992765999738998688543------223249999998669-9796789999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 99971337899765467898543223357421124200111678889996311132233467776773012200368897
Q 001761 268 QSMARRACLNEESYTVQDSSVSSKKTVMGSLTKQHSQVKVIGNALSAPSSMATESNLLSVSCTGFADQDLEATFSQSMPS 347 (1017)
Q Consensus 268 dSi~~g~~lde~~Y~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~s~~s~~~~ds~~~~i~~~~~~~~D~~~t~s~~~~s 347 (1017)
+|++.+.++||+.|.+........ . . +
T Consensus 76 ~~~~~~~~~~e~~y~~~~~~~~~~----------~------------------~--------------~----------- 102 (214)
T 1t15_A 76 QSIKERKMLNEHDFEVRGDVVNGR----------N------------------H--------------Q----------- 102 (214)
T ss_dssp HHHHTTSCCCGGGGBCCEETTTBT----------T------------------C--------------C-----------
T ss_pred HHHHCCCCCCHHHEEEECCCCCCC----------C------------------C--------------C-----------
T ss_conf 999779918857768602206664----------6------------------5--------------2-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 67897654457777789633457878763434788877786767985999926-79489999999999289888730499
Q 001761 348 MYMDAPVVSKDGAIEAPTAQTRNESNSDVCVANDSQSEDNDLYLSDCRIVLVG-FEASEMRKLVNMVRRGGGSRYVSYNN 426 (1017)
Q Consensus 348 ~~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~gc~iyl~G-F~~~e~~~l~~lI~~~GGtv~~~~s~ 426 (1017)
. |..... .....+|.|+.||+.| |....+..|.++|+.+||++...+..
T Consensus 103 ----~-----------~~~~r~---------------~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~ 152 (214)
T 1t15_A 103 ----G-----------PKRARE---------------SQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSS 152 (214)
T ss_dssp ----H-----------HHHHHT---------------CTTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGG
T ss_pred ----C-----------HHHHHH---------------CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCC
T ss_conf ----1-----------456764---------------1787665897899970688989999999999779989368554
Q ss_pred C----C-EEEEECCCCHHH-HHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCCCCHH
Q ss_conf 8----0-299986787354-99999855059827974327899986234456210000
Q 001761 427 G----L-THIVVGTLSEAD-KREVRSLASLGIIQVVKSTWLEDCDRERREISILQRHV 478 (1017)
Q Consensus 427 ~----v-THIIv~~~~~~~-~~~vr~~~~~~~i~vV~~~WL~~Ci~~~~~l~e~~~~i 478 (1017)
. . .++|+..+.... ....+.++....+.+|+++||++|+..++++|+++|.+
T Consensus 153 ~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y~l 210 (214)
T 1t15_A 153 FTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLI 210 (214)
T ss_dssp CCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSGGGBC
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCEEE
T ss_conf 4458897408998888663244689999963992870168997686567689746452
No 5
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=1.00 E-value=1 Score=194.13 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=49.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCHHHH
Q ss_conf 81599943791159999999998199225887898635983366431013588999834679999609916975336999
Q 001761 189 GLMICVTRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRKWFDQ 268 (1017)
Q Consensus 189 Gl~I~~tG~~~~er~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~wg~I~IV~~~Wl~d 268 (1017)
+++|+++|+...++..+.+++..+||.+..+++..|||||+... ....+.||..|...| ++||+++||.+
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~---------~~~rt~K~l~a~~~g-~~IV~~~Wl~~ 71 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGD---------AVQSTLKCMLGILNG-CWILKFEWVKA 71 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSS---------SCCCSHHHHHHHHTT-CEEEETHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCC---------CCCHHHHHHHHHHCC-CEEECHHHHHH
T ss_conf 88999789998999999999998399993777999728997189---------753579999998569-97965899999
Q ss_pred HHHHCCCCCCCCCCCC
Q ss_conf 9971337899765467
Q 001761 269 SMARRACLNEESYTVQ 284 (1017)
Q Consensus 269 Si~~g~~lde~~Y~~~ 284 (1017)
|++.|.++||+.|.+.
T Consensus 72 c~~~~~~~~e~~y~~~ 87 (210)
T 2nte_A 72 CLRRKVCEQEEKYEIP 87 (210)
T ss_dssp HHHHTSCCCGGGTBCT
T ss_pred HHHCCCCCCHHHCCCC
T ss_conf 9986983786664577
No 6
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=1.00 E-value=1 Score=189.68 Aligned_cols=85 Identities=13% Similarity=0.296 Sum_probs=46.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHCC-EECCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCHHH
Q ss_conf 81599943791159999999998199-22588789863598336643101358899983467999960991697533699
Q 001761 189 GLMICVTRIPADERKEMEKLIVQNGG-KYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIINRKWFD 267 (1017)
Q Consensus 189 Gl~I~~tG~~~~er~~l~~lI~~~GG-~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~wg~I~IV~~~Wl~ 267 (1017)
.-+|++||++.+++..+..++..+|| .+..++++.|||||++. ...+.||..|...| ++||+++||.
T Consensus 11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~-----------~~rT~K~l~ai~~g-~~Iv~~~Wv~ 78 (199)
T 3u3z_A 11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGK-----------PLRTLNVLLGIARG-CWVLSYDWVL 78 (199)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESS-----------CCCBHHHHHHHHTT-CEEEETHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECC-----------CCCCHHHHHHHHCC-CCEEEHHHHH
T ss_conf 72999818899999999999998399488067799975999899-----------89989999998779-9698079999
Q ss_pred HHHHHCCCCCCCCCCCCC
Q ss_conf 999713378997654678
Q 001761 268 QSMARRACLNEESYTVQD 285 (1017)
Q Consensus 268 dSi~~g~~lde~~Y~~~~ 285 (1017)
+|++.|.++||+.|.+..
T Consensus 79 ~~~~~g~~l~e~~y~~~~ 96 (199)
T 3u3z_A 79 WSLELGHWISEEPFELSH 96 (199)
T ss_dssp HHHHHTSCCCSGGGBCTT
T ss_pred HHHHCCCCCCHHHCCCCC
T ss_conf 985678978754335667
No 7
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=1.00 E-value=1 Score=188.64 Aligned_cols=241 Identities=12% Similarity=0.162 Sum_probs=151.3
Q ss_pred CCCCCCCEEEE-ECCCHHHHHHHHHHHHHHCCEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEC
Q ss_conf 45777815999-43791159999999998199225887898635983366431013588999834679999609916975
Q 001761 184 VLPFSGLMICV-TRIPADERKEMEKLIVQNGGKYSPELTKKCTHLICDISFTIYFLNFPYTPEGDKFKVAKRWGHIHIIN 262 (1017)
Q Consensus 184 ~~~F~Gl~I~~-tG~~~~er~~l~~lI~~~GG~~~~~l~~~~THLIv~~~~~~~~~~~~~~~~g~K~~~A~~wg~I~IV~ 262 (1017)
..+|+|+.||+ +|.....+..|+++|..+||.+..+++..+||+|++ . .+.|+..+.++|+++||+
T Consensus 8 s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~------------~-~~~k~~~~~~~g~~~IV~ 74 (263)
T 3ii6_X 8 SNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAG------------S-ENIRVKNIILSNKHDVVK 74 (263)
T ss_dssp CCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECS------------S-CCHHHHHHHHSCSCCEEC
T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEEC------------C-CCHHHHHHHHCCCCCEEE
T ss_conf 666799499997489877899999999982998985399997999808------------9-988799998649988862
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 33699999713378997654678985432233574211242001116788899963111322334677767730122003
Q 001761 263 RKWFDQSMARRACLNEESYTVQDSSVSSKKTVMGSLTKQHSQVKVIGNALSAPSSMATESNLLSVSCTGFADQDLEATFS 342 (1017)
Q Consensus 263 ~~Wl~dSi~~g~~lde~~Y~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~s~~s~~~~ds~~~~i~~~~~~~~D~~~t~s 342 (1017)
++||.||++++.+||.++|.+-..++........ .... .-||+..++.- .++.. .-
T Consensus 75 p~Wv~Dci~~~~llp~~p~~~~~~~~~~~~~~~~-----~~D~-------------~GDsy~~~~~~-----~~l~~-ll 130 (263)
T 3ii6_X 75 PAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAR-----EYDC-------------YGDSYFIDTDL-----NQLKE-VF 130 (263)
T ss_dssp HHHHHHHHHHTSCCCCCGGGEEECCHHHHHHTTT-----TBCT-------------TSCBSSSCCCH-----HHHHH-HH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHH-----HCCC-------------CCCCCCCCCCH-----HHHHH-HH
T ss_conf 2999999766985899889975088889999998-----2666-------------57846785999-----99999-99
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC----------HHHHHHHH
Q ss_conf 688976789765445777778963--345787876343478887778676798599992679----------48999999
Q 001761 343 QSMPSMYMDAPVVSKDGAIEAPTA--QTRNESNSDVCVANDSQSEDNDLYLSDCRIVLVGFE----------ASEMRKLV 410 (1017)
Q Consensus 343 ~~~~s~~s~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~L~gc~iyl~GF~----------~~e~~~l~ 410 (1017)
..|....... |.. +... .++.... .+ .....+|+||+||+.++. ......+.
T Consensus 131 ~~~~~~~~~~-----------~~~~~~~~~--~l~~~~~--~~-~~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~ 194 (263)
T 3ii6_X 131 SGIKNSNEQT-----------PEEMASLIA--DLEYRYS--WD-CSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKA 194 (263)
T ss_dssp HSCCCCCSCC-----------HHHHHHHHH--HHHHHHT--CT-TCGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHH
T ss_pred HHCCCCCCCC-----------CHHHHHHHH--HHHHHHC--CC-CCCCHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 8476445678-----------313678999--9998635--46-884044388599993333457742222030799999
Q ss_pred HHHHHCCCEEEEECCCCCEEEEECCCCH--HHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCCCCHH
Q ss_conf 9999289888730499802999867873--5499999855059827974327899986234456210000
Q 001761 411 NMVRRGGGSRYVSYNNGLTHIVVGTLSE--ADKREVRSLASLGIIQVVKSTWLEDCDRERREISILQRHV 478 (1017)
Q Consensus 411 ~lI~~~GGtv~~~~s~~vTHIIv~~~~~--~~~~~vr~~~~~~~i~vV~~~WL~~Ci~~~~~l~e~~~~i 478 (1017)
.+++.+||++.+.+++.+||||+..... ...+.++.. ....+++|++.|+.+|+++++++||++|.|
T Consensus 195 ~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~-~~~~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 195 LELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRT-FKRKFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp HHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHT-CSSCCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred HHHHCCCCEEECCCCCCCEEEEECCCCCCHHHHHHHHHH-CCCCCEEECHHHHHHHHHCCCCCCHHHCCC
T ss_conf 999705989956779995599988998627999999860-589988968599999998588487763779
No 8
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=1.00 E-value=1 Score=185.97 Aligned_cols=179 Identities=19% Similarity=0.280 Sum_probs=150.9
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCC------CHHHHHHHHHCCCCCEEEHHHHHHHH
Q ss_conf 789983999907993449999999998199993127996049999356------72569999840998696234789998
Q 001761 98 LAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNV------LAAKYKWALNILKKPIVTVNWLYQCW 171 (1017)
Q Consensus 98 ~~l~g~~i~~tgl~~~ek~~I~~lI~~mGG~~~~~lt~~vThLIa~~~------~s~KY~~A~~~~~ipIVtp~WI~~c~ 171 (1017)
..|++++||+||+++.++..|.+++..+||.+..+++..+||||+... ++.||..|+. .++|||+++||.+|+
T Consensus 3 ~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~-~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 3 RAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIA-GGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHH-TTCEEEETHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHH-CCCCEECHHHHHHHH
T ss_conf 7778759998589989999999999980999958769998789973786544356599999998-899096699999999
Q ss_pred HHCCCCCCCCCCC---------------------CCCCCCEEEEEC-CCHHHHHHHHHHHHHHCCEECCCCCC-----CC
Q ss_conf 7147557666664---------------------577781599943-79115999999999819922588789-----86
Q 001761 172 NEHRVVPQESYKV---------------------LPFSGLMICVTR-IPADERKEMEKLIVQNGGKYSPELTK-----KC 224 (1017)
Q Consensus 172 ~~~~~lp~~~y~~---------------------~~F~Gl~I~~tG-~~~~er~~l~~lI~~~GG~~~~~l~~-----~~ 224 (1017)
+.++.++.++|.+ ++|.|+.||+.| +....+..|.++|+.+||++...+.. .+
T Consensus 82 ~~~~~~~e~~y~~~~~~~~~~~~~~~~~~r~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~ 161 (229)
T 1l0b_A 82 QERKLLSVHEFEVKGDVVTGSNHQGPRRSRESQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGA 161 (229)
T ss_dssp TTTSCCCSGGGBCCEETTTCSSSCHHHHHHHHC--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSS
T ss_pred HCCCCCCHHHEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCC
T ss_conf 87882781775752541455334650665542466646966999725789899999999997899896881346655798
Q ss_pred CEEEECCCCCCCCCCCCCCCCCHHHHH-HHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 359833664310135889998346799-99609916975336999997133789976546789
Q 001761 225 THLICDISFTIYFLNFPYTPEGDKFKV-AKRWGHIHIINRKWFDQSMARRACLNEESYTVQDS 286 (1017)
Q Consensus 225 THLIv~~~~~~~~~~~~~~~~g~K~~~-A~~wg~I~IV~~~Wl~dSi~~g~~lde~~Y~~~~~ 286 (1017)
+|+|+-... ......++.. |..+ +++||+++||+||+..+.+++++.|.+...
T Consensus 162 ~~~vvv~~~--------~~~~~~~~~~l~~~~-~i~iVs~~WlldsI~~~~~~~~~~Y~l~~~ 215 (229)
T 1l0b_A 162 HPIVLVQPS--------AWTEDNDCPDIGQLC-KGRLVMWDWVLDSISVYRCRDLDAYLVQNI 215 (229)
T ss_dssp CCEEEEC----------------------------CEEETHHHHHHHHTTSCCCGGGGBCC--
T ss_pred CEEEEECCC--------CCCHHHHHHHHHHHC-CCEEEEHHHHHHHHHCCCCCCCCCEECCCC
T ss_conf 539998088--------410022599999875-990860238999886388689636473466
No 9
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=1.00 E-value=1 Score=185.40 Aligned_cols=241 Identities=15% Similarity=0.206 Sum_probs=135.3
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHCC-CCEECHHHHH
Q ss_conf 999999882399957999978899999999978998999038999999967997499705369988419-9730848999
Q 001761 2 MKPKPFKEAKVYMSRNLVAPEIFDALLDALKLNGAEVELCCDPSRTGPNDFHVISSSDHEKFEDLRAKG-CNLLGPQCVL 80 (1017)
Q Consensus 2 ~~~~~f~g~~v~is~~~l~~~~~~~l~~~i~~~GG~v~~~~~~s~~~~~d~~Iia~~~~~~f~~l~~~~-~~IvgP~wi~ 80 (1017)
+.+.+|+|+.|||++. .....+++|+++|..+||.+... + ++..+|||++....++..+.+.+ ++||.|+||.
T Consensus 6 ~~s~lF~G~~f~V~sg-~~~~~k~~L~~lI~~~GG~v~~n--~---~~~t~~iIa~~~~~k~~~~~~~g~~~IV~p~Wv~ 79 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSG-TDSQPKPDLENRIAEFGGYIVQN--P---GPDTYCVIAGSENIRVKNIILSNKHDVVKPAWLL 79 (263)
T ss_dssp CCCCTTTTCEEEECCC-C--CCHHHHHHHHHHTTCEECSS--C---CTTEEEEECSSCCHHHHHHHHSCSCCEECHHHHH
T ss_pred CCCCCCCCEEEEEECC-CCCCCHHHHHHHHHHCCCEEEEC--C---CCCEEEEEECCCCHHHHHHHHCCCCCEEEHHHHH
T ss_conf 6766679949999748-98778999999999829989853--9---9997999808998879999864998886229999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCHHHHHHHHHCCC-C
Q ss_conf 999929999999875337899839999079934499999999981999931279960499993567256999984099-8
Q 001761 81 SCAKENRALPKQGFTCCLAMDGVKVIASGFDVDEKFKIEKLVTAMGGVLQTKATLDVSFVIVKNVLAAKYKWALNILK-K 159 (1017)
Q Consensus 81 ~c~~~~~~lp~~~~~~~~~l~g~~i~~tgl~~~ek~~I~~lI~~mGG~~~~~lt~~vThLIa~~~~s~KY~~A~~~~~-i 159 (1017)
+|+++++.||-.+|- +.. ...+.++.+.+.+..+|..|..+++. ...+....... .
T Consensus 80 Dci~~~~llp~~p~~---------~~~--~~~~~~~~~~~~~D~~GDsy~~~~~~------------~~l~~ll~~~~~~ 136 (263)
T 3ii6_X 80 ECFKTKSFVPWQPRF---------MIH--MCPSTKEHFAREYDCYGDSYFIDTDL------------NQLKEVFSGIKNS 136 (263)
T ss_dssp HHHHHTSCCCCCGGG---------EEE--CCHHHHHHTTTTBCTTSCBSSSCCCH------------HHHHHHHHSCCCC
T ss_pred HHHHCCCCCCCCHHH---------HHH--CCHHHHHHHHHHCCCCCCCCCCCCCH------------HHHHHHHHHCCCC
T ss_conf 997669858998899---------750--88889999998266657846785999------------9999999847644
Q ss_pred CEEEHHHHHH---HHHHCCCCCCCCCCCCCCCCCEEEEECCC----------HHHHHHHHHHHHHHCCEECCCCCCCCCE
Q ss_conf 6962347899---98714755766666457778159994379----------1159999999998199225887898635
Q 001761 160 PIVTVNWLYQ---CWNEHRVVPQESYKVLPFSGLMICVTRIP----------ADERKEMEKLIVQNGGKYSPELTKKCTH 226 (1017)
Q Consensus 160 pIVtp~WI~~---c~~~~~~lp~~~y~~~~F~Gl~I~~tG~~----------~~er~~l~~lI~~~GG~~~~~l~~~~TH 226 (1017)
....+....+ .++++. ..+..+..+|.||+|++.++. ......++.++..+||++...++..+||
T Consensus 137 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTH 214 (263)
T 3ii6_X 137 NEQTPEEMASLIADLEYRY--SWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSH 214 (263)
T ss_dssp CSCCHHHHHHHHHHHHHHH--TCTTCGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCE
T ss_pred CCCCCHHHHHHHHHHHHHH--CCCCCCCHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCEE
T ss_conf 5678313678999999863--54688404438859999333345774222203079999999970598995677999559
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHH-C-CCEEEECCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 9833664310135889998346799996-0-9916975336999997133789976546
Q 001761 227 LICDISFTIYFLNFPYTPEGDKFKVAKR-W-GHIHIINRKWFDQSMARRACLNEESYTV 283 (1017)
Q Consensus 227 LIv~~~~~~~~~~~~~~~~g~K~~~A~~-w-g~I~IV~~~Wl~dSi~~g~~lde~~Y~~ 283 (1017)
+|++.. .+....++..++ + ..++||+++||++|++.|.++||+.|.+
T Consensus 215 VVv~~~----------~~r~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 215 VIIGED----------HSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp EEECSC----------CTTHHHHHHHHHTCSSCCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred EEECCC----------CCCHHHHHHHHHHCCCCCEEECHHHHHHHHHCCCCCCHHHCCC
T ss_conf 998899----------8627999999860589988968599999998588487763779
No 10
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=1.00 E-value=1 Score=181.05 Aligned_cols=153 Identities=13% Similarity=0.184 Sum_probs=64.1
Q ss_pred HHHHHHHHHHCCCEEEECCCCC------EEEEEECC-CCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCC---
Q ss_conf 9999999998199993127996------04999935-6725699998409986962347899987147557666664---
Q 001761 115 KFKIEKLVTAMGGVLQTKATLD------VSFVIVKN-VLAAKYKWALNILKKPIVTVNWLYQCWNEHRVVPQESYKV--- 184 (1017)
Q Consensus 115 k~~I~~lI~~mGG~~~~~lt~~------vThLIa~~-~~s~KY~~A~~~~~ipIVtp~WI~~c~~~~~~lp~~~y~~--- 184 (1017)
|.+|.++|+++||.+..+++.. +||||+.. ..+.||..|+. .++|||+++||.+|++.++++++++|.+
T Consensus 60 k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LIa~~~~rt~K~l~ala-~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g 138 (259)
T 1kzy_C 60 KQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLA-SGIPCVSHVWVHDSCHANQLQNYRNYLLPAG 138 (259)
T ss_dssp HHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEEESSCCCSHHHHHHHH-HTCCEEETHHHHHHHHHTSCCCGGGSBCCCE
T ss_pred HHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHH-CCCCCCCHHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf 999999999779799557441233567776997499877599999986-5998856999999987687688787407788
Q ss_pred ---------------CCCCCCEEEEECCC-HHHHHHHHHHHHHHCCEECCCCC---------CCCCEEEECCCCCCCCCC
Q ss_conf ---------------57778159994379-11599999999981992258878---------986359833664310135
Q 001761 185 ---------------LPFSGLMICVTRIP-ADERKEMEKLIVQNGGKYSPELT---------KKCTHLICDISFTIYFLN 239 (1017)
Q Consensus 185 ---------------~~F~Gl~I~~tG~~-~~er~~l~~lI~~~GG~~~~~l~---------~~~THLIv~~~~~~~~~~ 239 (1017)
++|.|+.|++++.. ...+..+..++..+||.+...+. ...+|+|+.+
T Consensus 139 ~s~~~~~~~~~~~~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d-------- 210 (259)
T 1kzy_C 139 YSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTD-------- 210 (259)
T ss_dssp EETTTTEEECCCCCCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEEC--------
T ss_pred CCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCEEEEEC--------
T ss_conf 531000233025668887980899953888788999999999669889723554012331157887599979--------
Q ss_pred CCCCCCCHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCC
Q ss_conf 8899983467999960991697533699999713378997
Q 001761 240 FPYTPEGDKFKVAKRWGHIHIINRKWFDQSMARRACLNEE 279 (1017)
Q Consensus 240 ~~~~~~g~K~~~A~~wg~I~IV~~~Wl~dSi~~g~~lde~ 279 (1017)
......+++.|.+|+ ++||+.+||.+|+..+.+++++
T Consensus 211 --~~~~~~~~~~a~~~~-i~iVs~EWv~~sI~~~~ll~~~ 247 (259)
T 1kzy_C 211 --PSCPASVLKCAEALQ-LPVVSQEWVIQCLIVGERIGFK 247 (259)
T ss_dssp --TTCCHHHHHHHHHHT-CCEECHHHHHHHHHHTSCCCTT
T ss_pred --CCCHHHHHHHHHHCC-CCEECHHHHHHHHHHCCCCCCC
T ss_conf --998599999998449-9886399999999939868987
Done!